Citrus Sinensis ID: 000284
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1723 | 2.2.26 [Sep-21-2011] | |||||||
| Q84M24 | 1882 | ABC transporter A family | yes | no | 0.954 | 0.874 | 0.734 | 0.0 | |
| Q99758 | 1704 | ATP-binding cassette sub- | yes | no | 0.785 | 0.794 | 0.337 | 0.0 | |
| Q8R420 | 1704 | ATP-binding cassette sub- | yes | no | 0.765 | 0.774 | 0.340 | 0.0 | |
| Q54BT5 | 1702 | ABC transporter A family | yes | no | 0.776 | 0.786 | 0.292 | 1e-151 | |
| P34358 | 1704 | ABC transporter ced-7 OS= | no | no | 0.752 | 0.761 | 0.277 | 1e-123 | |
| O95477 | 2261 | ATP-binding cassette sub- | no | no | 0.437 | 0.333 | 0.332 | 1e-120 | |
| P41233 | 2261 | ATP-binding cassette sub- | no | no | 0.445 | 0.339 | 0.325 | 1e-120 | |
| Q9BZC7 | 2435 | ATP-binding cassette sub- | no | no | 0.417 | 0.295 | 0.326 | 1e-115 | |
| Q9ESR9 | 2434 | ATP-binding cassette sub- | no | no | 0.349 | 0.247 | 0.364 | 1e-115 | |
| P78363 | 2273 | Retinal-specific ATP-bind | no | no | 0.403 | 0.305 | 0.327 | 1e-106 |
| >sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 2494 bits (6465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1238/1685 (73%), Positives = 1432/1685 (84%), Gaps = 40/1685 (2%)
Query: 23 YGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLND 82
YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IMDTNGPY+ND
Sbjct: 133 YGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIMDTNGPYIND 192
Query: 83 LELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLK 142
LE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ + SNLS + L +
Sbjct: 193 LEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQN------NDLPLSHSNLS-SALRFE 245
Query: 143 QPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQK 202
PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISRLISYSVFEKEQK
Sbjct: 246 LPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVFEKEQK 305
Query: 203 IREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGL 262
IREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDKT+VFTYFF FGL
Sbjct: 306 IREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKTLVFTYFFLFGL 365
Query: 263 SAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFAL 322
SAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV+ASLLSPTAFAL
Sbjct: 366 SAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKVVASLLSPTAFAL 425
Query: 323 GSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGV 382
GS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GLYLDKVLP+ENGV
Sbjct: 426 GSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLPRENGV 485
Query: 383 RYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECAFALDACEPVVEA 435
RY WNFIF F RKK+ +++ + A++++N+ + +PV E+
Sbjct: 486 RYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG-----------EPFDPVFES 534
Query: 436 ISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTT 495
ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLGHNGAGKSTT
Sbjct: 535 ISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTT 594
Query: 496 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG 555
ISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTVREHLEMFAVLKG
Sbjct: 595 ISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKG 654
Query: 556 VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
V+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+ILDEPTSGM
Sbjct: 655 VEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGM 714
Query: 616 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKCCGSS+FLKH YG
Sbjct: 715 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYG 774
Query: 676 VGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESC 735
VGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS FE+MFREIESC
Sbjct: 775 VGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESC 834
Query: 736 IRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDY 795
++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD + Q + V+ D
Sbjct: 835 MKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIED--KQEDIFVSPDT 892
Query: 796 VSA-------ESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIK 848
S+ + PK +++C G I+T V +A LIVAAV + F+
Sbjct: 893 KSSLVCIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIVAAVWTLIGFISI 946
Query: 849 KCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPD 908
+CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL GLLFL+LKPHPD
Sbjct: 947 QCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPD 1006
Query: 909 MLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEK 968
S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ + +SY+FPN ++
Sbjct: 1007 QKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNTSYKFPNPKE 1066
Query: 969 ALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSC 1028
ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DGSLG+TVLHN +C
Sbjct: 1067 ALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSLGYTVLHNGTC 1126
Query: 1029 QHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAF 1088
QHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLDAFS +II++IAF
Sbjct: 1127 QHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAIIVNIAF 1186
Query: 1089 SFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFG 1148
SFIPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS+ AIILFY FG
Sbjct: 1187 SFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFG 1246
Query: 1149 LDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVIS 1208
L+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+VHFF+GLILMVIS
Sbjct: 1247 LEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVIS 1306
Query: 1209 FIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASI 1268
F+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S GVF+WNVT ASI
Sbjct: 1307 FVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASI 1366
Query: 1269 CYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESD 1328
CYLG ESI YFL+TLGLEL+P K +I EWW+ + SS EPLL+ S+ +
Sbjct: 1367 CYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKDSTGAI 1426
Query: 1329 TLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGEC 1388
+ D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV SLTFSVQAGEC
Sbjct: 1427 STDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGEC 1486
Query: 1389 FGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL 1448
FGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYCPQFDAL EYL
Sbjct: 1487 FGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYL 1546
Query: 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508
TV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKRKLSVAIAMIG
Sbjct: 1547 TVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIG 1606
Query: 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1568
DPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVG
Sbjct: 1607 DPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVG 1666
Query: 1569 GQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLE 1628
G+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL DLE
Sbjct: 1667 GRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLE 1726
Query: 1629 VCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQ 1688
VCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +QLSEQ
Sbjct: 1727 VCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQ 1786
Query: 1689 LVRDG 1693
L RDG
Sbjct: 1787 LFRDG 1791
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/1555 (33%), Positives = 770/1555 (49%), Gaps = 202/1555 (12%)
Query: 95 YSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIR 154
Y GFL +Q +D I+ + A+ AT L+ +
Sbjct: 206 YIREGFLAVQHAVDRAIM----EYHADAATRQ--------------------LFQRLTVT 241
Query: 155 MVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKD 214
+ FP + D F I+ + +L LL F Y + V EKE++++E + MMGL
Sbjct: 242 IKRFPYPPFIADPFLVAIQYQLPLLLLLSFTYTALTIARAVVQEKERRLKEYMRMMGLSS 301
Query: 215 GIFHLSWFITYAAQFAVSSGIITA--CTMD----SLFKYSDKTVVFTYFFSFGLSAITLS 268
+ +WF+ + +++ +T C ++ SD ++V + F +S I+ S
Sbjct: 302 WLHWSAWFLLFFLFLLIAASFMTLLFCVKVKPNVAVLSRSDPSLVLAFLLCFAISTISFS 361
Query: 269 FFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVN 326
F +STFF++A A A G + + PY+ V M L K+ + LLS A A+G+
Sbjct: 362 FMVSTFFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCLLSNVAMAMGAQL 421
Query: 327 FADYERAHVGLRWSNMWRASSGVN------FLVCLLMMLLDTLLYGVIGLYLDKVLPKEN 380
+E +G++W ++ S VN F L M+LLD++LYG++ Y++ V P +
Sbjct: 422 IGKFEAKGMGIQWRDLL---SPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYMEAVFPGQF 478
Query: 381 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDM 440
GV W F + K + K L E EA D+
Sbjct: 479 GVPQPWYFFIMPSYWCGKPRAVAGKEEEDSDPEKALRNE------------YFEAEPEDL 526
Query: 441 KQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLV 500
V G I+I+ L KV+ + AV L L LYE QI LLGHNGAGK+TT+SML
Sbjct: 527 ----VAG--IKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLT 580
Query: 501 GLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL 560
GL PPT+G A + G I+ DM +IRK LG+CPQ+DILF LTV EHL +A LKG+ +
Sbjct: 581 GLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQK 640
Query: 561 LESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
V +M+ +GL DK N R LSGGM+RKLS+GIALI SKV+ILDEPTSGMD S
Sbjct: 641 CPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISR 700
Query: 621 RLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680
R W L+++ K R I+LTTH MDEA+ LGDRIAIMA G L+CCGSSLFLK +YG GY +
Sbjct: 701 RAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHM 760
Query: 681 TLVKSAP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKS 739
TLVK + + +V+ H+P+A S G E++F LP S+ FE +F ++E ++
Sbjct: 761 TLVKEPHCNPEDISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAKLEKKQKE- 819
Query: 740 VSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAE 799
LGI SFG S+TT+EEVFLRV L +S Q L L Y +
Sbjct: 820 --------------LGIASFGASITTMEEVFLRVG--KLVDSSMDIQAIQLPALQY---Q 860
Query: 800 SDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRS 859
+ +A + L G G I +++ T + K T +
Sbjct: 861 HERRASDWAVDSNLCGAMDPSDG-IGALIEEERTAV-------------KLNTGLALHCQ 906
Query: 860 MFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNF 919
FW A+F+K+A + R+ K + Q+L+P + + L L++ +++ F
Sbjct: 907 QFW----AMFLKKAAYSWREWKMVAAQVLVPLTCVTLAL-----------LAINYSSELF 951
Query: 920 -NPLLS---GGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVD 975
+P+L G G +PF S P +++ + + + L DA+
Sbjct: 952 DDPMLRLTLGEYGRTVVPF--SVPGTSQLGQQLS------------------EHLKDALQ 991
Query: 976 AAGPTLGPVLLSMSEYLM-------SSFNESYQSRYGAIVMDDQNDDGSLG-FTVLHNSS 1027
A G VL + E+L+ FNE +V D G L N+
Sbjct: 992 AEGQEPREVLGDLEEFLIFRASVEGGGFNER------CLVAASFRDVGERTVVNALFNNQ 1045
Query: 1028 CQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQ---RHDLDAFSVSIII 1084
H+ T + V++ + +L G + +I N P P + Q + F +++ +
Sbjct: 1046 AYHSPATALAVVDNLLFKLLCGP-HASIVVSNFPQPRSALQAAKDQFNEGRKGFDIALNL 1104
Query: 1085 SIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILF 1144
A +F+ ++F++ V ER V+AK Q +SGV V S+W S +WD ISFL PS +++F
Sbjct: 1105 LFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVASFWLSALLWDLISFLIPSLLLLVVF 1164
Query: 1145 YIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLIL 1204
F + F G + T+L+ L YG AI Y + FFF A + + + +G+
Sbjct: 1165 KAFDVRAFTRDGHMADTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIAT 1224
Query: 1205 MVISFIMGLLEAT-RSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGV----- 1258
++ IM + + L + F + P C ++S + + TS V
Sbjct: 1225 FLMVTIMRIPAVKLEELSKTLDHVFLVLPNHCLGMAVSSFYENYETRRYCTSSEVAAHYC 1284
Query: 1259 -----------FDWNVTS-----ASICYLGCES-ICYFLLTLGLELLPSHKWTLMTIKEW 1301
+ W+ AS+ GC I FL+ L L ++
Sbjct: 1285 KKYNIQYQENFYAWSAPGVGRFVASMAASGCAYLILLFLIETNL---------LQRLRGI 1335
Query: 1302 WKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAI---IYLR 1358
R R T P+L ED DV ER R+L+ S D+ + + ++
Sbjct: 1336 LCALRRRRTLTELYTRMPVLP-----------EDQDVADERTRILAPSPDSLLHTPLIIK 1384
Query: 1359 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418
L KVY ++ +AV L+ +VQ GECFG LG NGAGKTTT M++GEE T G AF
Sbjct: 1385 ELSKVY---EQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAF 1441
Query: 1419 IFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1478
+ G I SD R+ IGYCPQFDALL+++T +E L +YAR++G+ E + V L
Sbjct: 1442 VGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRG 1501
Query: 1479 FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
L HA K T SGGNKRKLS IA+IG+P ++ LDEPSTGMDP+A+R +W+ ++R
Sbjct: 1502 LLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR-- 1559
Query: 1539 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1593
R+ A+I+T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L K
Sbjct: 1560 ARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1614
|
Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol. Homo sapiens (taxid: 9606) |
| >sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/1487 (34%), Positives = 768/1487 (51%), Gaps = 168/1487 (11%)
Query: 158 FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIF 217
FP Y D F I+ + +L +L F Y +I V EKE+K++E + MMGL +
Sbjct: 245 FPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLH 304
Query: 218 HLSWFITYAAQFAVSSGIIT-----ACTMD-SLFKYSDKTVVFTYFFSFGLSAITLSFFI 271
+WF+ + F + +T D ++ SD ++V + F +S+I+ SF +
Sbjct: 305 WSAWFLMFFLFFLIVVSFMTLLFCVKVKKDIAVLSNSDPSLVLAFLLCFAISSISFSFMV 364
Query: 272 STFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFAD 329
STFF++A A AVG + + PY+ V M L K+++ LLS A A+G+
Sbjct: 365 STFFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGK 424
Query: 330 YERAHVGLRWSNMWR---ASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRW 386
+E G++W ++ F L M+LLD+ LYG++ Y++ V P + GV W
Sbjct: 425 FEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPW 484
Query: 387 NFIFQNCF--RRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE 444
+F + ++V+ ++ + K L E EA D+
Sbjct: 485 HFFLMPSYWCGNPRTVVGKEEEGSDPE--KALRNE------------YFEAEPEDL---- 526
Query: 445 VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
V G I+I+ L KV+ + + L L LYE QI LLGHNGAGK+TT+S+L GL P
Sbjct: 527 VAG--IKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSLLTGLFP 584
Query: 505 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
PT+G A + G I+ DM +IRK LG+CPQ+D+LF LTV EHL +A LKG+ +
Sbjct: 585 PTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSLQKCPEE 644
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
V +M+ + L DK ++ + LSGGMKRKLS+GIALI SKV++LDEPTSGMD S R W
Sbjct: 645 VKQMLHILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGMDAVSRRAIW 704
Query: 625 QLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVK 684
L+++ K R +LLTTH MDEA+ LGDRIAI+A G L+CCGSSLFLK +YG GY +TLVK
Sbjct: 705 DLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVK 764
Query: 685 SAP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKV 743
+ + +V+ H+P+A+ S G E++F LP S+ FES+F ++E ++
Sbjct: 765 EPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKKQKE----- 819
Query: 744 EADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQ 803
LGI SFG SVTT+EEVFLRV G +D S I Q L L Y Q
Sbjct: 820 ----------LGIASFGASVTTMEEVFLRV-GKLVDTSMDI-QAIQLPALQY-------Q 860
Query: 804 APKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQ 863
+R S+ L N V T + A++ L+K T + FW
Sbjct: 861 HERRASDWALDSNLCGVMD---------PTNGIGALIEEEEVLVK-LNTGLALHCQQFW- 909
Query: 864 HCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFN-PL 922
A+F+K+A + R+ K + Q+L+P L + +L++ +T+ F+ PL
Sbjct: 910 ---AMFLKKAAYSWREWKMVAAQVLVPLTCLTL-----------ALLAIHYTSEIFDDPL 955
Query: 923 LS---GGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGP 979
L G +PF + P + +++ + + L D + A
Sbjct: 956 LKLSLNEYGRTVVPFSV--PGTSRLAQQLS------------------ENLRDMLQAERQ 995
Query: 980 TLGPVLLSMSEYLM-------SSFNESYQSRYGAIVMDDQNDDGSLGF-TVLHNSSCQHA 1031
VL + E+L+ FNE +V D G L T L N+ H+
Sbjct: 996 EPREVLGDLEEFLVFRASVEGGGFNER------CLVATSFKDRGELTVVTALFNNQAYHS 1049
Query: 1032 GPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRH---DLDAFSVSIIISIAF 1088
T + +++ + +L G + +I N+P P Q + H F +++ + IA
Sbjct: 1050 PATALAIVDNLLFKLLCGPQ-ASIEISNYPQPRNTLQVAKDHFNEGRKGFDIALNLLIAM 1108
Query: 1089 SFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFG 1148
+F+ ++F++ V ER V+AK Q +SGV V ++W S +WD ISFL PS +++F F
Sbjct: 1109 AFLASTFSILAVSERAVQAKHVQFVSGVHVATFWFSALLWDLISFLVPSLLLLVVFQAFN 1168
Query: 1149 LDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVIS 1208
+ F G + +L+ + YG AI Y ++FFFS + A + + + +G+ ++
Sbjct: 1169 VHAFTRDGHMADLLLLLMLYGWAIIPLMYLMSFFFSAASTAYTRLTIFNILSGIATFIMV 1228
Query: 1209 FIM-----GLLEATRSANSL------------LKNFFR--LSPGFCFADGLASLALLRQG 1249
IM L E +R+ + + + NF+ + +C + LA+ +
Sbjct: 1229 TIMRIPAVKLEELSRTLDHVFLVLPNHCLGMAVSNFYENYETRRYCTSSELAAHYCKKYN 1288
Query: 1250 MKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRL 1309
++ + S + W+ + LTL + + W L T +
Sbjct: 1289 IQYQES--FYAWSTPGVGKFVTSMAASGGIYLTLLFLIETNLLWRLRTF----------I 1336
Query: 1310 CNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAI---IYLRNLRKVYPG 1366
C + LQ+ + L ED DV ER+R+L S+D+ + + + L KVY
Sbjct: 1337 CAFRRRWTLAELQNRTSV----LPEDQDVAEERSRILVPSLDSMLDTPLIINELSKVY-- 1390
Query: 1367 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS 1426
+ +AV ++ +VQ GECFG LG NGAGKTTT M++GEE T G AF+ G I S
Sbjct: 1391 -DQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1449
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
D R+ +GYCPQFDALL+++T +E L +YAR++G+ E ++ V L L HA
Sbjct: 1450 DIGKVRQRMGYCPQFDALLDHMTGREMLVMYARLRGIPERLINACVENTLRGLLLEPHAN 1509
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
K T SGGNKRKLS IA+IG+P ++ LDEPSTGMDP+A+R +W+ ++R R+ A+
Sbjct: 1510 KLVKTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVAR--ARESGKAI 1567
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1593
++T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L+ K
Sbjct: 1568 VITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAK 1614
|
Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol. Mus musculus (taxid: 10090) |
| >sp|Q54BT5|ABCA3_DICDI ABC transporter A family member 3 OS=Dictyostelium discoideum GN=abcA3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust.
Identities = 457/1563 (29%), Positives = 717/1563 (45%), Gaps = 225/1563 (14%)
Query: 69 VKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVE 128
+K + + Y ND + ++ Q + T Q IF AQ NVE
Sbjct: 152 LKYSISVDADYTNDNNIQISPRSDSQIYLRHYFTQIQTAVDQAIFMAQ---------NVE 202
Query: 129 IP----PSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGF 184
IP ++ L Q WT D I+K G+
Sbjct: 203 IPMVVTGQRFPNPYIHLWQTWT-------------------DGRNMILKETGGIFITAAI 243
Query: 185 LYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSL 244
+ I+ V EKE KI E + +MGL +++S I+ S+ I+ S
Sbjct: 244 FVGLFTTITNMVMEKESKILEAMKIMGLHSLPYYVSIAISSCYTIIPSTIIVIVVLKGSQ 303
Query: 245 FKYSDKTVVFTYFFS-FGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEA 303
++ + + T F +S I L+F +S FF R+K A V L L VN
Sbjct: 304 LIWTTQWYILTIILILFSISLILLAFILSKFFNRSKFAGLVCFLIVLIMAGIGIAVNHIN 363
Query: 304 VPMVLKVIASLLSPTAFALG--SVNFADYERAH-VGLRWSNMWRASSGVNFLVCLLMMLL 360
V +K+I LLSP A +L S++ D E V WS + + + M++L
Sbjct: 364 VSTTVKLIFCLLSPVAISLANYSMSMKDLELVKIVNPDWSIIVSENQVIG------MLIL 417
Query: 361 DTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEK 420
D +LY + Y+D ++ E G + F + KK+ ++ + I L K
Sbjct: 418 DVVLYAALVWYIDNIISGEFGQSKPFYFFLTKSYWCKKNANENDLVDLSKAIESPLYLRK 477
Query: 421 ECAFALDACEPVVEAISLDMKQQEVDGR--CIQIRKLHKVYATKRGNCCAVNSLQLTLYE 478
+ LD S D + E+ IQIRKL K + T G AV+ L + +Y+
Sbjct: 478 K---DLDYNN------SQDFELNEIHSSKATIQIRKLRKEFKTGDGKRVAVDDLSIDMYQ 528
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 538
++I LG NG+GKSTTI ML GLI T G AL+ G +I ++D IRK +GV Q DI++
Sbjct: 529 DRIHCFLGPNGSGKSTTIGMLTGLITCTRGSALINGLDINQNIDLIRKNIGVVLQQDIIW 588
Query: 539 PELTVREHLEMFAVLKG---VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 595
LTV EHL +A LKG +KE E+ +M EVGL K++ LSGG KRKL L
Sbjct: 589 DNLTVLEHLIFYAQLKGYSNLKEAKTEA--KKMGIEVGLELKLHNKAGTLSGGQKRKLCL 646
Query: 596 GIALIG-DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 654
GIA IG +S ++ LDE +SG+DP S I KKG+ I+L+TH MDEA+ LGD I+
Sbjct: 647 GIAFIGPNSNILFLDEVSSGLDPLSRSEVQDFIISKKKGKTIILSTHYMDEADLLGDTIS 706
Query: 655 IMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPD--ASAAADIVYRHIPSALCVSEVGTE 712
I+A+G LKC GS LFLK+++GVGY LT+ K + + + +I ++I A +S+ GTE
Sbjct: 707 IIAHGKLKCNGSPLFLKNRFGVGYLLTITKKSTEFNKDSVMEITNKYIKQAHILSDAGTE 766
Query: 713 ITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLR 772
++ +LP+ S F F+ +E C + L I+S+GIS++TLEEVFL+
Sbjct: 767 LSIRLPMESLPMFSQYFKHLEDC---------------KNQLLIDSYGISISTLEEVFLK 811
Query: 773 VAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRAC 832
+ E + N +D A K + K G V V Q+
Sbjct: 812 IG------QETLKSTPNF----------NDPAVKEALSTKSSG---------VKVGQQLK 846
Query: 833 TLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAI 892
L LIK+ CT ++D K+ +F +++P I
Sbjct: 847 GL-----------LIKRICT-----------------------TKKDFKSFMFSIVVPLI 872
Query: 893 FLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGW 952
L +GL+ M T FN D++ P+ + Y +
Sbjct: 873 ILALGLV---------MYKNMRTIETFN--------------DVTTPLTFSIDDYGDNIY 909
Query: 953 IQRFKQSSYRFPNAEKALADAVD-----AAGPTLGPVLLSMSEYLMSSFNESYQSRYGAI 1007
+ P + A+D + G + LL E L +Y+ GA
Sbjct: 910 V----------PWSISGQNQAIDLRIKNSIGKSNHSKLLPADE-LEDYLTLNYEGNPGAF 958
Query: 1008 VMDDQ--NDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTT 1065
D L F V +N HA P +IN ++ +L G + I+T + P
Sbjct: 959 AFGKTIIEDIEMLSFKVYYNRDYLHALPIYINFVDNLMLSNLGG---VGIQTTSRPFQHI 1015
Query: 1066 QSQ---QLQRHDLDAFSVSIIISI-AFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSY 1121
+S+ ++ + A II+++ AF+ + AS A I +ER + K+ ISG+ Y
Sbjct: 1016 KSKFELATEKINFSAIIFFIILTLAAFALVVASHAGNIAQERAARIKRLLYISGLKKYVY 1075
Query: 1122 WTSTYIWDFI-SFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLT 1180
W S IWD++ +F+ A+++ I +F + L L+ + AI +Y +
Sbjct: 1076 WLSNLIWDYVLTFIMVIFLAVVVVIIDS--KFRNQFPLFICALVL--FVTAIIPLSYLFS 1131
Query: 1181 FFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRL----SPGFCF 1236
+ +S H A + +HF GL++ V FI+ + + N +L+ + F
Sbjct: 1132 YCWSSHGKATGFIFGIHFGIGLLMTVTCFILRIW-VIKDDNDILQTITDIIDLVFFFFSP 1190
Query: 1237 ADGLASLALLRQGMKDKTSDG----VFDWNVTSA--SICYLGCESICYFLLTLGLELLPS 1290
+ + ++ T G W + +C+L ++ + + + L+ P
Sbjct: 1191 FYCFSKVMVIISNFPGTTRLGESYIANYWGIKFGLPPVCFLALHTLVWTIWIMVLDYYPE 1250
Query: 1291 HKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSV 1350
+ ++ KG + P S +ED DV ER++VLS
Sbjct: 1251 LR------GKYRKGRNEKSSPPPPS-----------------DEDSDVSHERSKVLSFET 1287
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
N I +R+ K+Y G ++ +AV++ + S+ G+ FG LG NGAGK+TTL +SGE
Sbjct: 1288 SNDPIIMRDFFKLYKGKGKAKDNLAVYNTSLSIPKGQTFGLLGLNGAGKSTTLGCLSGEV 1347
Query: 1411 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
P+ G F+ G +I++ A R +G+C Q+++L+ L+ +E + LY RIKG+ E ++ +
Sbjct: 1348 IPSGGEIFVNGFNIQTQRLDALRSVGFCHQYNSLIGLLSAREQIRLYCRIKGIEESKIQE 1407
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V + DL SGGNKRK+++++A++G+P + LDE S G+DP+ RFM
Sbjct: 1408 TVEAFIKMMDLGSIGNSNVAGYSGGNKRKVALSVAIVGNPSVCFLDEVSAGVDPVVARFM 1467
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
W VI+ L + +ILTTHSM E A+C R+ IM G++ C+GS QH+K +FG+ +
Sbjct: 1468 WNVITELKKDK---VIILTTHSMLECSAVCDRLTIMKSGKMMCLGSIQHIKDKFGSGYSI 1524
Query: 1591 EVK 1593
+VK
Sbjct: 1525 DVK 1527
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P34358|CED7_CAEEL ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 408/1471 (27%), Positives = 691/1471 (46%), Gaps = 174/1471 (11%)
Query: 192 ISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSL---FKYS 248
I+ + + ++ L MGL +F+ + + +F V I C++ L ++
Sbjct: 276 ITREIAAENHAVKPYLTAMGLSTFMFYAAHVVMAFLKFFV----IFLCSIIPLTFVMEFV 331
Query: 249 DKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL 308
+ +GL A+ F+++FF +A+ +++ Y + E +
Sbjct: 332 SPAALIVTVLMYGLGAVIFGAFVASFFNNTNSAIKAILVAWGAMIGISYKLRPELDQISS 391
Query: 309 KVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLV--CLLMMLLDTLLYG 366
+ L AFAL +DY R L +NM+ SS ++F + L+MM++D L
Sbjct: 392 CFLYGLNINGAFALAVEAISDYMRRERELNLTNMFNDSS-LHFSLGWALVMMIVDILWMS 450
Query: 367 VIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHH----VSSAEVKINKKLS---KE 419
+ L +D + R +F + F + + V++ +IN+++ +
Sbjct: 451 IGALVVDHI-------RTSADFSLRTLFDFEAPEDDENQTDGVTAQNTRINEQVRNRVRR 503
Query: 420 KECAFALDACE------PVVEAISLDMKQQEVDGRC------IQIRKLHKVYATKRGNCC 467
+ ++ P ++ SL E DG I +R L K+++T
Sbjct: 504 SDMEIQMNPMASTSLNPPNADSDSLLEGSTEADGARDTARADIIVRNLVKIWSTTGER-- 561
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
AV+ L L Q LLGHNGAGKSTT S + G+I PT G + G ++ + E R+
Sbjct: 562 AVDGLSLRAVRGQCSILLGHNGAGKSTTFSSIAGIIRPTNGRITICGYDVGNEPGETRRH 621
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
+G+CPQY+ L+ +LTV EHL++ LKG +E+ + + ++ +V L K N LSG
Sbjct: 622 IGMCPQYNPLYDQLTVSEHLKLVYGLKGAREKDFKQDMKRLLSDVKLDFKENEKAVNLSG 681
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAE 647
GMKRKL + +ALIGDS+VV+LDEPT+GMDP + + +L+++ K R ILLTTH MDEAE
Sbjct: 682 GMKRKLCVCMALIGDSEVVLLDEPTAGMDPGARQDVQKLVEREKANRTILLTTHYMDEAE 741
Query: 648 ELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLV-----KSAPDASAAADIVYRHIPS 702
LGD + IM++G L G++ +LK ++G GY LT+V A D+ ++
Sbjct: 742 RLGDWVFIMSHGKLVASGTNQYLKQKFGTGYLLTVVLDHNGDKRKMAVILTDVCTHYVKE 801
Query: 703 ALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDT-----DYLGIE 757
A G +I LP A F +F+ +E+ ++ D +T L +
Sbjct: 802 AERGEMHGQQIEIILPEARKKEFVPLFQALEAIQDRNYRSNVFDNMPNTLKSQLATLEMR 861
Query: 758 SFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRI---SNCKLF 814
SFG+S+ TLE+VF+ + G +D++ S++N+ ++ + +A P S+ K
Sbjct: 862 SFGLSLNTLEQVFITI-GDKVDKA-IASRQNSRISHNSRNASEPSLKPAGYDTQSSTKSA 919
Query: 815 GNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAV 874
+Y+ + +++ + V F++ + KK +
Sbjct: 920 DSYQKLMDSQARGPEKSG--VAKMVAQFISIMRKKF-----------------------L 954
Query: 875 SARRDRKTIVFQLLIPAIFL-LVGLLFLKLKPHPDMLSV-TFTTSNFNP-LLSGGGGGGP 931
+RR+ + Q+LIP I L LVG L + D SV + T S P + G
Sbjct: 955 YSRRNWAQLFTQVLIPIILLGLVGSLTTLKSNNTDQFSVRSLTPSGIEPSKVVWRFENGT 1014
Query: 932 IPFDLSWPIANEVSKYIQ--GGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMS 989
IP + A K ++ GG+ + PN K+L + A T+G
Sbjct: 1015 IPEE-----AANFEKILRKSGGFEVLNYNTKNPLPNITKSLIGEMPPA--TIG------- 1060
Query: 990 EYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATG 1049
+ M+ N L N H PT I+++N A L TG
Sbjct: 1061 -----------------MTMNSDN------LEALFNMRYYHVLPTLISMINRARL---TG 1094
Query: 1050 NRNMTIRTRN--HPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKA 1107
+ I + + T+ S L +D ++I I F+ + ++F + +++ER +
Sbjct: 1095 TVDAEISSGVFLYSKSTSNSNLLPSQLIDVLLAPMLILI-FAMVTSTFVMFLIEERTCQF 1153
Query: 1108 KQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLG 1167
QQ ++G+S +++++++ I+D I L+ C I LF L +L +
Sbjct: 1154 AHQQFLTGISPITFYSASLIYDGI--LYSLICLIFLFMFLAFHWMYDH--LAIVILFWFL 1209
Query: 1168 YGLAIASSTYCLTFFFSDHTMAQNVVLLVH--FFTGLILMVISFIMGLLEATRSANSLLK 1225
Y + Y ++F F + A NV+L++ +G L+ + I + S+L
Sbjct: 1210 YFFSSVPFIYAVSFLFQSPSKA-NVLLIIWQVVISGAALLAVFLIFMIFNIDEWLKSILV 1268
Query: 1226 NFFR-LSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLG 1284
N F L P + F G A + + GM S+ + +W+ + +G +C F L +
Sbjct: 1269 NIFMFLLPSYAF--GSAIITINTYGMI-LPSEELMNWDHCGKNAWLMGTFGVCSFALFVL 1325
Query: 1285 LELLPSHKWTLMTIKEWWKGTRHRLCNT-PSSYLEPLLQSSSESDTLDLNEDIDVQVERN 1343
L+ K+ + + W R N P P+ +S SE ER
Sbjct: 1326 LQF----KFVRRFLSQVWTVRRSSHNNVQPMMGDLPVCESVSE--------------ERE 1367
Query: 1344 RVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL 1403
RV + N+ + +++L K + G+ + AV+ L +V ECFG LG NGAGKTTT
Sbjct: 1368 RVHRVNSQNSALVIKDLTKTF--GRFT----AVNELCLAVDQKECFGLLGVNGAGKTTTF 1421
Query: 1404 SMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV 1463
++++G+ + + G A I G+D+ IGYCPQFDAL+ LT +E LE+ A++ G
Sbjct: 1422 NILTGQSFASSGEAMIGGRDVTELIS-----IGYCPQFDALMLDLTGRESLEILAQMHGF 1476
Query: 1464 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
Y+ ++ + V ++ HA K SGG KRK+SV +A++ ++ILDEP+ G+D
Sbjct: 1477 ENYKAKAELILECV--GMIAHADKLVRFYSGGQKRKISVGVALLAPTQMIILDEPTAGID 1534
Query: 1524 PIAKRFMWEVISRLSTRQ-GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
P A+R +WE++ L R+ +A++LT+HSM+E +ALC+RI ++ G L IGS Q LK+
Sbjct: 1535 PKARREVWELL--LWCREHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQELKS 1592
Query: 1583 RFGNFLELEVKPTEVSSVDLEDLCQIIQERV 1613
+GN + + E + D+ + Q++Q R+
Sbjct: 1593 LYGNNYTMTLSLYEPNQRDM--VVQLVQTRL 1621
|
Functions in the engulfment of cell corpses during embryonic programed cell death to translocate molecules that mediate homotypic adhesion between cell surfaces of the dying and engulfing cells. Caenorhabditis elegans (taxid: 6239) |
| >sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 307/923 (33%), Positives = 461/923 (49%), Gaps = 169/923 (18%)
Query: 54 SIRLNHTWAFSGFPDVKTIMDTN---------GPYLNDLELGVNIIPTMQYSFSGFLTLQ 104
SI L H + D+ + TN GP + E M+Y + GF LQ
Sbjct: 545 SIELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFE-------DMRYVWGGFAYLQ 597
Query: 105 QVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYT 164
V++ II TG T G ++ + +P+P Y
Sbjct: 598 DVVEQAIIRVL--TGTEKKT-----------GVYM--------------QQMPYPC--YV 628
Query: 165 DDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFIT 224
DD F ++ R M + L ++Y ++ +I V+EKE +++E + +MGL + I SWFI+
Sbjct: 629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFIS 688
Query: 225 YAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVA 283
VS+G++ + +L YSD +VVF + F + I F IST F+RA A A
Sbjct: 689 SLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVVTILQCFLISTLFSRANLAAA 748
Query: 284 VGTLSFLGAFFPYY--TVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSN 341
G + + + PY + V LK+ ASLLSP AF G FA +E +G++W N
Sbjct: 749 CGGIIYFTLYLPYVLCVAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGIGVQWDN 808
Query: 342 MWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNF-IFQNCFRRK 397
++ + G N + MML DT LYGV+ Y++ V P + G+ W F ++ + +
Sbjct: 809 LFESPVEEDGFNLTTSVSMMLFDTFLYGVMTWYIEAVFPGQYGIPRPWYFPCTKSYWFGE 868
Query: 398 KSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHK 457
+S K H S + +I++ +E+ L + I+ L K
Sbjct: 869 ESDEKSHPGSNQKRISEICMEEEPTHLKLG----------------------VSIQNLVK 906
Query: 458 VYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 517
VY + G AV+ L L YE QI + LGHNGAGK+TT+S+L GL PPT+G A + GK+I
Sbjct: 907 VY--RDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI 964
Query: 518 TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-AD 576
++M IR+ LGVCPQ+++LF LTV EH+ +A LKG+ E+ +++ + +M +VGL +
Sbjct: 965 RSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSS 1024
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 636
K+ LSGGM+RKLS+ +A +G SKVVILDEPT+G+DPYS R W+L+ K ++GR I
Sbjct: 1025 KLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTI 1084
Query: 637 LLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVK------------ 684
+L+TH MDEA+ LGDRIAI+++G L C GSSLFLK+Q G GY LTLVK
Sbjct: 1085 ILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLSSCRN 1144
Query: 685 ----------------SAPDA---------------SAAADIVYRHIPSALCVSEVGTEI 713
S+ DA SA ++++ +H+ A V ++G E+
Sbjct: 1145 SSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHEL 1204
Query: 714 TFKLPL--ASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFL 771
T+ LP A +F +F EI+ D D LGI S+GIS TTLEE+FL
Sbjct: 1205 TYVLPYEAAKEGAFVELFHEID------------DRLSD---LGISSYGISETTLEEIFL 1249
Query: 772 RVA---GCNLDESECI--SQRNNLVTLDYVSA----ESDDQAPKRISNCKLFGNYKWVFG 822
+VA G + + S+ ++RN D S DD A S+
Sbjct: 1250 KVAEESGVDAETSDGTLPARRNRRAFGDKQSCLRPFTEDDAADPNDSDID---------- 1299
Query: 823 FIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKT 882
+ T +++ + G ++ +K + Q AL KR + ARR RK
Sbjct: 1300 -----PESRETDLLSGMDGKGSYQVK--------GWKLTQQQFVALLWKRLLIARRSRKG 1346
Query: 883 IVFQLLIPAIFLLVGLLFLKLKP 905
Q+++PA+F+ + L+F + P
Sbjct: 1347 FFAQIVLPAVFVCIALVFSLIVP 1369
|
cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport. Homo sapiens (taxid: 9606) |
| >sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/941 (32%), Positives = 464/941 (49%), Gaps = 173/941 (18%)
Query: 36 KIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTN---------GPYLNDLELG 86
K +VF P+ S+ L H + D+ + TN GP + E
Sbjct: 531 KFWAGIVFTGITPD----SVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFE-- 584
Query: 87 VNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWT 146
M+Y + GF LQ V++ II TG+ T G +
Sbjct: 585 -----DMRYVWGGFAYLQDVVEQAIIRVL--TGSEKKT-----------GVY-------- 618
Query: 147 LYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREG 206
++ +P+P Y DD F ++ R M + L ++Y ++ +I V+EKE +++E
Sbjct: 619 ------VQQMPYPC--YVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKET 670
Query: 207 LYMMGLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAI 265
+ +MGL +GI SWF++ VS+G++ + +L YSD +VVF + F + I
Sbjct: 671 MRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAMVTI 730
Query: 266 TLSFFISTFFARAKTAVAVGTLSFLGAFFPYY--TVNDEAVPMVLKVIASLLSPTAFALG 323
F IST F+RA A A G + + + PY + V +K+ ASLLSP AF G
Sbjct: 731 LQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFASLLSPVAFGFG 790
Query: 324 SVNFADYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKEN 380
FA +E +G++W N++ + G N + MML DT LYGV+ Y++ V P +
Sbjct: 791 CEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMTWYIEAVFPGQY 850
Query: 381 GVRYRWNFIFQNCFRRKKSVI-KHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLD 439
G+ W F + + + K H S++ +++ +E+ L
Sbjct: 851 GIPRPWYFPCTKSYWFGEEIDEKSHPGSSQKGVSEICMEEEPTHLRLG------------ 898
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+ I+ L KVY + G AV+ L L YE QI + LGHNGAGK+TT+S+L
Sbjct: 899 ----------VSIQNLVKVY--RDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSIL 946
Query: 500 VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 559
GL PPT+G A + GK+I ++M IR+ LGVCPQ+++LF LTV EH+ +A LKG+ E+
Sbjct: 947 TGLFPPTSGTAYILGKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEK 1006
Query: 560 LLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
+++ + +M +VGL K+ LSGGM+RKLS+ +A +G SKVVILDEPT+G+DPY
Sbjct: 1007 HVKAEMEQMALDVGLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1066
Query: 619 SMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGY 678
S R W+L+ K ++GR I+L+TH MDEA+ LGDRIAI+++G L C GSSLFLK+Q G GY
Sbjct: 1067 SRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGY 1126
Query: 679 TLTLVK----------------------------SAPDA---------------SAAADI 695
LTLVK S+ DA SA +++
Sbjct: 1127 YLTLVKKDVESSLSSCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNL 1186
Query: 696 VYRHIPSALCVSEVGTEITFKLPL--ASSSSFESMFREIESCIRKSVSKVEADATEDTDY 753
+ +H+ A V ++G E+T+ LP A +F +F EI+ D D
Sbjct: 1187 IRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEID------------DRLSD--- 1231
Query: 754 LGIESFGISVTTLEEVFLRVA---GCNLDESECI--SQRNNLVTLDYVSA----ESDDQA 804
LGI S+GIS TTLEE+FL+VA G + + S+ ++RN D S DD
Sbjct: 1232 LGISSYGISETTLEEIFLKVAEESGVDAETSDGTLPARRNRRAFGDKQSCLHPFTEDDAV 1291
Query: 805 PKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQH 864
S+ + T +++ + G ++ +K + Q
Sbjct: 1292 DPNDSDID---------------PESRETDLLSGMDGKGSYQLK--------GWKLTQQQ 1328
Query: 865 CKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKP 905
AL KR + ARR RK Q+++PA+F+ + L+F + P
Sbjct: 1329 FVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVP 1369
|
cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport. Mus musculus (taxid: 10090) |
| >sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/817 (32%), Positives = 427/817 (52%), Gaps = 97/817 (11%)
Query: 151 SNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMM 210
S ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E + M
Sbjct: 684 SYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTM 741
Query: 211 GLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITLSF 269
GL + + ++WFIT Q ++S +TA + +S +++ + + ++ I F
Sbjct: 742 GLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCF 801
Query: 270 FISTFFARAKTAVAVGTLSFLGAFFPYY------TVNDEAVPMVLKVIASLLSPTAFALG 323
+S +++AK A A G + + ++ PY V + + K IASL+S TAF LG
Sbjct: 802 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLG 861
Query: 324 SVNFADYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKEN 380
S FA YE A VG++W ++ N L+ + M+++D ++YG++ Y++ V P
Sbjct: 862 SKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMY 921
Query: 381 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS---KEKECAFALDACEPVVEAIS 437
G+ W F Q + + S +LS +++ CA E E
Sbjct: 922 GLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMESRRFE---ETRG 978
Query: 438 LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS 497
++ + + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S
Sbjct: 979 MEEEPTHLP-LVVCVDKLTKVY--KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMS 1035
Query: 498 MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 557
+L GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF LTV EHL ++ LK +
Sbjct: 1036 ILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMA 1095
Query: 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+E + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DP
Sbjct: 1096 QEEIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDP 1155
Query: 618 YSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 677
Y+ R W LI K K GR ILL+TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG G
Sbjct: 1156 YARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDG 1215
Query: 678 YTLTLVK--------------SAPDASA---------AADIVYRHIPSALCVSEVGTEIT 714
Y LTLVK S+P A + + +H+ S L VS+ TE++
Sbjct: 1216 YRLTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELS 1275
Query: 715 FKLP--LASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLR 772
+ LP A +FE +F+ +E + D L + SFG+ TTLEEVFL+
Sbjct: 1276 YILPSEAAKKGAFERLFQHLERSL---------------DALHLSSFGLMDTTLEEVFLK 1320
Query: 773 VA--GCNLDESEC-ISQRNNLVTLDYVSAESDDQAPKRISNCK----------------- 812
V+ +L+ SE + + V S + ++ C
Sbjct: 1321 VSEEDQSLENSEADVKESRKDVLPGAEGPASGEGHAGNLARCSELTQSQASLQSASSVGS 1380
Query: 813 -----------LFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMF 861
++G+Y+ +F + + A L + +K + R
Sbjct: 1381 ARGDEGAGYTDVYGDYRPLFDNPQDPDNVSLQEVEAEALSRVGQGSRKLDGGWLKVRQF- 1439
Query: 862 WQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGL 898
L +KR ARR+ K + Q+L+PA F+ V +
Sbjct: 1440 ----HGLLVKRFHCARRNSKALFSQILLPAFFVCVAM 1472
|
Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development. Homo sapiens (taxid: 9606) |
| >sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/664 (36%), Positives = 380/664 (57%), Gaps = 62/664 (9%)
Query: 150 PSN-IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLY 208
P N ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E +
Sbjct: 682 PGNYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMK 739
Query: 209 MMGLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLFKYSDKTVVFTYFFSFGLSAITL 267
MGL + + ++WFIT Q ++S +TA + +S +++ + + ++ I
Sbjct: 740 TMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMF 799
Query: 268 SFFISTFFARAKTAVAVGTLSFLGAFFPYY------TVNDEAVPMVLKVIASLLSPTAFA 321
F +S +++AK A A G + + ++ PY V + + K IASL+S TAF
Sbjct: 800 CFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFG 859
Query: 322 LGSVNFADYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPK 378
LGS FA YE A VG++W ++ N L+ + M+++DT++YGV+ Y++ V P
Sbjct: 860 LGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPG 919
Query: 379 ENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS---KEKECAFALDACEPVVEA 435
G+ W F Q + + S +LS +++ CA E E
Sbjct: 920 MYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMESRHFE---ET 976
Query: 436 ISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTT 495
++ + + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT
Sbjct: 977 RGMEEEPTHLP-LVVCVDKLTKVY--KNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTT 1033
Query: 496 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG 555
+S+L GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF +LTV EHL ++ LK
Sbjct: 1034 MSILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKS 1093
Query: 556 VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
+ +E + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+
Sbjct: 1094 MAQEEIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGV 1153
Query: 616 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
DPY+ R W LI K K GR ILL+TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG
Sbjct: 1154 DPYARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYG 1213
Query: 676 VGYTLTLVK--------------SAPDASA---------AADIVYRHIPSALCVSEVGTE 712
GY LTLVK S+P + + +H+ S+L VS+ TE
Sbjct: 1214 DGYRLTLVKRPAEPGTSQEPGMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTE 1273
Query: 713 ITFKLP--LASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVF 770
+++ LP +FE +F+++E + D L + SFG+ TTLEEVF
Sbjct: 1274 LSYILPSEAVKKGAFERLFQQLEHSL---------------DALHLSSFGLMDTTLEEVF 1318
Query: 771 LRVA 774
L+V+
Sbjct: 1319 LKVS 1322
|
Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development. Rattus norvegicus (taxid: 10116) |
| >sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 265/810 (32%), Positives = 406/810 (50%), Gaps = 115/810 (14%)
Query: 153 IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGL 212
++ +P+P + DD F I+ R + +L ++Y +S + V EKE +++E L G+
Sbjct: 634 LQQMPYPC--FVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV 691
Query: 213 KDGIFHLSWFITYAAQFAVSSGIITACTMDS-LFKYSDKTVVFTYFFSFGLSAITLSFFI 271
+ + +WF+ + ++S ++T M + YSD ++F + +F + I L F +
Sbjct: 692 SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMLCFLL 751
Query: 272 STFFARAKTAVAVGTLSFLGAFFPY---YTVNDEAVPMVLKVIASLLSPTAFALGSVNFA 328
STFF++A A A + + + P+ + D + K + SLLSP AF G+
Sbjct: 752 STFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAELKKAV-SLLSPVAFGFGTEYLV 810
Query: 329 DYERAHVGLRWSNMWRASSG---VNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYR 385
+E +GL+WSN+ + + +FL+ + MMLLD +YG++ YLD+V P + G
Sbjct: 811 RFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQVFPGDYGTPLP 870
Query: 386 WNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE- 444
W F+ Q + A K + L++E E D P E I ++E
Sbjct: 871 WYFLLQESYWLGGEGCSTREERALEK-TEPLTEETE-----DPEHP--EGIHDSFFEREH 922
Query: 445 ---VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG 501
V G C+ + L K++ + AV+ L +T YENQI A LGHNGAGK+TT+S+L G
Sbjct: 923 PGWVPGVCV--KNLVKIF--EPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTG 978
Query: 502 LIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 561
L+PPT+G LV G++I +D +R+ LG+CPQ++ILF LTV EH+ +A LKG +E
Sbjct: 979 LLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEA 1038
Query: 562 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
+ + M+++ GL K N + LSGGM+RKLS+ IA +GD+KVVILDEPTSG+DPYS R
Sbjct: 1039 QLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRR 1098
Query: 622 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLT 681
W L+ K + GR I+++TH MDEA+ LGDRIAI+A G L C G+ LFLK+ +G G LT
Sbjct: 1099 SIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLT 1158
Query: 682 LVK-------------------------SAP--------------DASAAADIVYRHIPS 702
LV+ + P D + D+V H+P
Sbjct: 1159 LVRKMKNIQSQRKGSEGTCSCSSKGFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHHVPE 1218
Query: 703 ALCVSEVGTEITFKLPLAS--SSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFG 760
A V +G E+ F LP + ++ S+FRE+E + AD LG+ SFG
Sbjct: 1219 AKLVECIGQELIFLLPNKNFKHRAYASLFRELEETL--------AD-------LGLSSFG 1263
Query: 761 ISVTTLEEVFLRV----------AGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISN 810
IS T LEE+FL+V AG + E ++ R+ + E Q P+ +
Sbjct: 1264 ISDTPLEEIFLKVTEDSDSGPLFAGGAQQKRENVNPRHPCLG----PREKAGQTPQDSNV 1319
Query: 811 CKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFI 870
C G + LN + QH +AL +
Sbjct: 1320 CSP--------GAPAAHPEGQPPPEPECPGPQLN-----------TGTQLVLQHVQALLV 1360
Query: 871 KRAVSARRDRKTIVFQLLIPAIFLLVGLLF 900
KR R K + Q+++PA F+ + L+
Sbjct: 1361 KRFQHTIRSHKDFLAQIVLPATFVFLALML 1390
|
In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1723 | ||||||
| 224090097 | 1891 | ABC transporter family, cholesterol/phos | 0.970 | 0.884 | 0.805 | 0.0 | |
| 356504779 | 1892 | PREDICTED: ABC transporter A family memb | 0.968 | 0.882 | 0.769 | 0.0 | |
| 225441860 | 1881 | PREDICTED: ABC transporter A family memb | 0.972 | 0.890 | 0.786 | 0.0 | |
| 255577258 | 1722 | abc transporter, putative [Ricinus commu | 0.947 | 0.948 | 0.767 | 0.0 | |
| 79595267 | 1882 | ABC transporter A family member 1 [Arabi | 0.954 | 0.874 | 0.734 | 0.0 | |
| 33350934 | 1882 | ATP-binding cassette transporter AtABCA1 | 0.955 | 0.875 | 0.734 | 0.0 | |
| 297827817 | 1914 | ATPase, coupled to transmembrane movemen | 0.964 | 0.867 | 0.718 | 0.0 | |
| 79324883 | 1846 | ABC transporter A family member 1 [Arabi | 0.915 | 0.854 | 0.655 | 0.0 | |
| 357509697 | 2142 | ATP-binding cassette sub-family A member | 0.715 | 0.575 | 0.719 | 0.0 | |
| 302810659 | 1855 | hypothetical protein SELMODRAFT_446818 [ | 0.921 | 0.855 | 0.539 | 0.0 |
| >gi|224090097|ref|XP_002308937.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] gi|222854913|gb|EEE92460.1| ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2748 bits (7124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1351/1677 (80%), Positives = 1491/1677 (88%), Gaps = 4/1677 (0%)
Query: 18 LKVHLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNG 77
L LYGTCSQVK+C NPKIKGAVVFH+QGP+LFDYSIRLNHTWAFSGFPDV+TIMD NG
Sbjct: 128 LTSDLYGTCSQVKNCSNPKIKGAVVFHNQGPQLFDYSIRLNHTWAFSGFPDVRTIMDVNG 187
Query: 78 PYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGT 137
PYLNDLELGVNIIPTMQYS S F TLQQV+DSFIIFA+QQT +TE++E+P SN
Sbjct: 188 PYLNDLELGVNIIPTMQYSSSAFFTLQQVVDSFIIFASQQTETESSTEHIELPSSNSFNK 247
Query: 138 HLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVF 197
SLK PWT +SPS IR+ PFPTREYTDD+FQSIIKRVMGVLYLLGFLYPIS LISYSVF
Sbjct: 248 SSSLKLPWTKFSPSKIRIAPFPTREYTDDQFQSIIKRVMGVLYLLGFLYPISGLISYSVF 307
Query: 198 EKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYF 257
EKEQKIREGLYMMGLKDGIFHLSWFITYA QFA+SSGIITACT+++LFKYSDK+VVF YF
Sbjct: 308 EKEQKIREGLYMMGLKDGIFHLSWFITYALQFAISSGIITACTLNNLFKYSDKSVVFVYF 367
Query: 258 FSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSP 317
FSFGLSAI LSF ISTFF RAKTAVAVGTLSF GAFFPYYTVND AVPM+LKV+ASLLSP
Sbjct: 368 FSFGLSAIMLSFLISTFFTRAKTAVAVGTLSFFGAFFPYYTVNDPAVPMILKVLASLLSP 427
Query: 318 TAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLP 377
TAFALGS+NFADYERAHVGLRWSN+WR SSGVNFLVCLLMML DTL+Y IGLYLDKVLP
Sbjct: 428 TAFALGSINFADYERAHVGLRWSNIWRESSGVNFLVCLLMMLFDTLIYCAIGLYLDKVLP 487
Query: 378 KENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAIS 437
+ENG+RY WNF+FQ CF RK + +KHH SS E N +LS E+ + EP VEAIS
Sbjct: 488 RENGMRYPWNFLFQKCFWRKNNFVKHHGSSLESNFNDELSNERASFLGNNTQEPAVEAIS 547
Query: 438 LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS 497
LDMKQQE+D RCIQIR L KVYA+KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS
Sbjct: 548 LDMKQQELDKRCIQIRNLRKVYASKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS 607
Query: 498 MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 557
MLVGL+PPT+GDALVFGKNIT DMDEIR GLGVCPQ DILFPELTVREHLE+FA LKGVK
Sbjct: 608 MLVGLLPPTSGDALVFGKNITTDMDEIRNGLGVCPQNDILFPELTVREHLEIFAALKGVK 667
Query: 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
E++LE V +MV+EVGLADKVN VRALSGGMKRKLSLGIALIG+SKVVILDEPTSGMDP
Sbjct: 668 EDILERDVTDMVNEVGLADKVNTAVRALSGGMKRKLSLGIALIGNSKVVILDEPTSGMDP 727
Query: 618 YSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 677
YSMRLTWQLIK+IKKGRIILLTTHSMDEA+ELGDRIAIMANGSLKCCGSSLFLKHQYGVG
Sbjct: 728 YSMRLTWQLIKRIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHQYGVG 787
Query: 678 YTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIR 737
YTLTLVKS+P AS A+DIVYRH+PSA CVSEVGTEI+FKLPLASS SFESMFREIESC+R
Sbjct: 788 YTLTLVKSSPTASVASDIVYRHVPSATCVSEVGTEISFKLPLASSVSFESMFREIESCMR 847
Query: 738 KSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLD-YV 796
+S+SK E ++ED Y GIES+GISVTTLEEVFLRVAGC DE++ RNN+++ + V
Sbjct: 848 RSISKSEMSSSEDKSYPGIESYGISVTTLEEVFLRVAGCGYDETDDFVDRNNILSSNSTV 907
Query: 797 SAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCII 856
A D++ + I + K+ GNYK + GFI +V R L+ A +L F+NFL +CC+CCII
Sbjct: 908 PAAYDNRPSETIFDAKILGNYKKIIGFISAMVGRVSGLMAATILSFINFLGMQCCSCCII 967
Query: 857 SRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTT 916
SRS FWQH KALFIKRA+SARRDRKTIVFQLLIPAIFLL GLLFLKLK HPD SVT TT
Sbjct: 968 SRSTFWQHTKALFIKRAISARRDRKTIVFQLLIPAIFLLFGLLFLKLKSHPDQQSVTLTT 1027
Query: 917 SNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDA 976
S+FNPLLSGGGGGGPIPFDLS PIA EV+ YI+GGWIQ F+QS+YRFP+AE+ LADA+ A
Sbjct: 1028 SHFNPLLSGGGGGGPIPFDLSLPIAKEVAGYIKGGWIQNFRQSAYRFPDAERELADAIKA 1087
Query: 977 AGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFI 1036
AGPTLGPVLLSMSE+LMSSFNESYQSRYGA+VMD ++DDGSLG+T+LHNSSCQHA PTFI
Sbjct: 1088 AGPTLGPVLLSMSEFLMSSFNESYQSRYGAVVMDKKHDDGSLGYTILHNSSCQHAAPTFI 1147
Query: 1037 NVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFA 1096
N+MN AILRLATG++NMTI+TRNHPLP T+SQ LQ HDLDAFS +II++IAFSFIPASFA
Sbjct: 1148 NLMNAAILRLATGDQNMTIQTRNHPLPMTKSQHLQHHDLDAFSAAIIVNIAFSFIPASFA 1207
Query: 1097 VAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRG 1156
VAIVKEREVKAK QQLISGVSVLSYW STYIWDFISFL PSS A++LFYIFGLDQF+G+
Sbjct: 1208 VAIVKEREVKAKHQQLISGVSVLSYWVSTYIWDFISFLIPSSFALLLFYIFGLDQFIGKD 1267
Query: 1157 CLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEA 1216
C LPT L+FL YGLAIASSTYCLTF FS+H+MAQNVVLLVHFFTGLILMVISFIMGL++
Sbjct: 1268 CFLPTFLMFLEYGLAIASSTYCLTFCFSEHSMAQNVVLLVHFFTGLILMVISFIMGLIQT 1327
Query: 1217 TRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESI 1276
T SAN+LLKNFFRLSPGFCFADGLASLALLRQGMKDK+S+ VFDWNVT AS+CYLG ESI
Sbjct: 1328 TASANNLLKNFFRLSPGFCFADGLASLALLRQGMKDKSSNAVFDWNVTGASLCYLGFESI 1387
Query: 1277 CYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDI 1336
YFLLTLG ELLP HK T + IK++W+ + +T LEPLL+S SE+ L+ +EDI
Sbjct: 1388 GYFLLTLGWELLPFHKLTPVGIKQYWRSIMNLQHDTHD--LEPLLKSPSETVDLNFDEDI 1445
Query: 1337 DVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNG 1396
DVQ ERNRVL+GS+DNAIIYLRNLRKVYPG K KVAV SLTFSVQAGECFGFLGTNG
Sbjct: 1446 DVQTERNRVLAGSIDNAIIYLRNLRKVYPGEKHR-TKVAVRSLTFSVQAGECFGFLGTNG 1504
Query: 1397 AGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL 1456
AGKTTTLSM++GEE PTDG+AFIFGKD RSDPKAARR IGYCPQFDALLE+LTVQEHLEL
Sbjct: 1505 AGKTTTLSMLTGEESPTDGSAFIFGKDTRSDPKAARRHIGYCPQFDALLEFLTVQEHLEL 1564
Query: 1457 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1516
YARIKGVA+YR+DDVVMEKL+EFDLLKHA KPSFTLSGGNKRKLSVAIAMIGDPPIVILD
Sbjct: 1565 YARIKGVADYRIDDVVMEKLLEFDLLKHANKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1624
Query: 1517 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGS
Sbjct: 1625 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGS 1684
Query: 1577 PQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDS 1636
PQHLKTRFGN LELEVKPTEVSSVDLE+LCQ IQ R+FDIPS RSLLDD+EVCIG IDS
Sbjct: 1685 PQHLKTRFGNHLELEVKPTEVSSVDLENLCQTIQSRLFDIPSHPRSLLDDIEVCIGRIDS 1744
Query: 1637 ISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
I+SENA+ EISLSQEM++++GRWLGNEER+KTL+SS+ D +FGEQLSEQLVRDG
Sbjct: 1745 ITSENASVMEISLSQEMIILIGRWLGNEERVKTLVSSTPISDGVFGEQLSEQLVRDG 1801
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504779|ref|XP_003521172.1| PREDICTED: ABC transporter A family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2625 bits (6803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1286/1672 (76%), Positives = 1456/1672 (87%), Gaps = 3/1672 (0%)
Query: 23 YGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLND 82
YGTC+Q ++C NPKIKGAVVF++QGP+ FDYSIRLNHTWAFSGFPDV TIMDTNGP+LND
Sbjct: 133 YGTCNQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLND 192
Query: 83 LELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLK 142
LELGV+ +PTMQYSFSGFLTLQQ++DSFII AQQ+ N EN+E+P + SLK
Sbjct: 193 LELGVSAVPTMQYSFSGFLTLQQMVDSFIILIAQQSDFNFNAENLELPLPGFYDNNFSLK 252
Query: 143 QPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQK 202
PWT ++P+ IR+ PFPTREYTDD+FQSIIKRVMG+LYLLGFLYPISRLISYSV+EKEQK
Sbjct: 253 NPWTQFNPARIRIAPFPTREYTDDQFQSIIKRVMGILYLLGFLYPISRLISYSVYEKEQK 312
Query: 203 IREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGL 262
I+EGLYMMGL DGIFHLSWFITYA QFA+SSGI+TACTMD+LFKYSDKT+VF YFF FGL
Sbjct: 313 IKEGLYMMGLNDGIFHLSWFITYALQFAISSGILTACTMDNLFKYSDKTLVFAYFFVFGL 372
Query: 263 SAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFAL 322
SAI LSFFISTFF RAKTAVAVGTL+FLGAFFPYYTVN+E V ++LKVIASLLSPTAFAL
Sbjct: 373 SAIMLSFFISTFFKRAKTAVAVGTLAFLGAFFPYYTVNEEGVSIILKVIASLLSPTAFAL 432
Query: 323 GSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGV 382
GS+NFADYERAHVGLRWSN+WR SSGVNFL CLLMM+LDTLLY GLY DKVLP+E G+
Sbjct: 433 GSINFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCATGLYFDKVLPREYGL 492
Query: 383 RYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQ 442
RY W+FIFQ F RKK ++KH S +V+I+ K S+ + + +EAISL+MKQ
Sbjct: 493 RYPWSFIFQKDFWRKKKILKHCSSGFKVEISDKNSESEGNLSGEYTSKSGIEAISLEMKQ 552
Query: 443 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
QE+DGRCIQIR LHKVYATK+G+CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL
Sbjct: 553 QELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612
Query: 503 IPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 562
+PPT+GDALVFGKNI +D+DEIRK LGVCPQ+DILFPELTVREHLE+FA LKGV+E L+
Sbjct: 613 LPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFATLKGVEEHSLD 672
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ V M DEVGLADK+N +VR LSGGMKRKLSLGIALIG SKV++LDEPTSGMDPYSMRL
Sbjct: 673 NAVINMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGSSKVIVLDEPTSGMDPYSMRL 732
Query: 623 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 682
TWQLIKKIKKGRIILLTTHSMDEA+ELGDRIAIMANGSLKCCGSSLFLKH YGVGYTLTL
Sbjct: 733 TWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTL 792
Query: 683 VKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSK 742
VKSAP AS A DIVYRH+PSA CVSEVGTEI+F+LP+ASSS+FE MFREIE C++K+VS
Sbjct: 793 VKSAPTASIAGDIVYRHVPSATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKTVSN 852
Query: 743 VEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSA-ESD 801
+E D D LGIES+GISVTTLEEVFLRVAGC+ DE EC + N+ D V++ ++
Sbjct: 853 MELSGNGDKDSLGIESYGISVTTLEEVFLRVAGCDYDEVECFVENNHTHKSDSVASLPTN 912
Query: 802 DQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMF 861
D +IS K FGNYK +FGF+ T++ RAC LI A V+ F+NFL +CC+CC I+RS F
Sbjct: 913 DHPSTKISCLKFFGNYKKIFGFMTTMLGRACGLIFATVISFINFLGMQCCSCCFITRSTF 972
Query: 862 WQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNP 921
WQH KALFIKRA+SARRD KTI+FQL+IP +FL +GLLFLKLKPHPD S+T +TS+FNP
Sbjct: 973 WQHSKALFIKRAISARRDHKTIIFQLMIPTLFLFIGLLFLKLKPHPDQQSLTLSTSHFNP 1032
Query: 922 LLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTL 981
LLSGGGGGGPIPF+LS PIA +V++ + GGWIQRFK SSYRFPN+EKALADAV+AAGPTL
Sbjct: 1033 LLSGGGGGGPIPFNLSLPIAEKVAQNVIGGWIQRFKPSSYRFPNSEKALADAVEAAGPTL 1092
Query: 982 GPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNT 1041
GP LLSMSEYLMSSFNESYQSRYGAIVMDDQN+DGSLG+TVLHN SCQHA PTFIN+MN+
Sbjct: 1093 GPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNCSCQHAAPTFINLMNS 1152
Query: 1042 AILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVK 1101
AILRLAT + NMTI+TRNHPLPTTQSQ+LQRHDLDAFS ++I++IAFSFIPASFAV+IVK
Sbjct: 1153 AILRLATHDTNMTIQTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVK 1212
Query: 1102 EREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPT 1161
EREVKAKQQQLISGVSVLSYW ST+IWDF+SFLFP+S AI+LFY+FGLDQFVG LLPT
Sbjct: 1213 EREVKAKQQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYVFGLDQFVGGVSLLPT 1272
Query: 1162 VLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSAN 1221
+L+ L YGLAIASSTYCLTFFF DHTMAQNVVLL+HFF+GLILMVISFIMGL+ +T SAN
Sbjct: 1273 ILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFSGLILMVISFIMGLMPSTMSAN 1332
Query: 1222 SLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLL 1281
S LKNFFR+SPGFCFADGLASLALLRQGMKDKTSDGVFDWNVT ASICYL ES YFLL
Sbjct: 1333 SFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLL 1392
Query: 1282 TLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVE 1341
TL LE+ PS T IK+WW N P YLEPLL+SSSE+ +D +ED+DV+ E
Sbjct: 1393 TLALEMFPSLNLTSFMIKKWWGKINIFQHNNP--YLEPLLESSSETVAMDFDEDVDVKTE 1450
Query: 1342 RNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1401
RNRVLSGS+DN+IIYLRNLRKVY K KVAV SLTFSVQ GECFGFLGTNGAGKTT
Sbjct: 1451 RNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTT 1510
Query: 1402 TLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK 1461
T+SM+ GEE P+DGTAFIFGKDI S PKAARR IGYCPQFDALLE+LTV+EHLELYARIK
Sbjct: 1511 TISMLCGEECPSDGTAFIFGKDICSHPKAARRYIGYCPQFDALLEFLTVREHLELYARIK 1570
Query: 1462 GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
GV ++ +D+VVMEKL EFDLLKHA KPSF+LSGGNKRKLSVAIAMIGDPPIVILDEPSTG
Sbjct: 1571 GVPDFAIDNVVMEKLTEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1630
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581
MDPIAKRFMW+VISR+STR+GKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHLK
Sbjct: 1631 MDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLK 1690
Query: 1582 TRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN 1641
TRFGN LELEVKPTEVSS DL++LCQ IQER+ D+PS RSLL+DLE+CIGG DS++S N
Sbjct: 1691 TRFGNHLELEVKPTEVSSADLQNLCQAIQERLLDVPSHPRSLLNDLEICIGGTDSVTSGN 1750
Query: 1642 ATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
+ AEISL++EM+ ++GRWL NEER+KTLIS + D EQLSEQL RDG
Sbjct: 1751 TSIAEISLTREMIGLIGRWLDNEERVKTLISGTPVCDGASQEQLSEQLFRDG 1802
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441860|ref|XP_002284204.1| PREDICTED: ABC transporter A family member 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2600 bits (6739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1329/1689 (78%), Positives = 1474/1689 (87%), Gaps = 14/1689 (0%)
Query: 6 RHLKAMLRKNWLLKVHLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSG 65
R K L + ++ LYGTC+QVK+C NPKIKGAVVFHDQGP +FDYSIRLNH+WAFSG
Sbjct: 117 RVYKDELELDTYIRSDLYGTCNQVKNCSNPKIKGAVVFHDQGPLVFDYSIRLNHSWAFSG 176
Query: 66 FPDVKTIMDTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATE 125
FPDVKTIMDTNGPYLNDLELGV+ +PT+QYSFSGFLTLQQVLDSFIIFAAQQ AN+ E
Sbjct: 177 FPDVKTIMDTNGPYLNDLELGVDAVPTLQYSFSGFLTLQQVLDSFIIFAAQQNEANMVNE 236
Query: 126 NVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFL 185
N+E+P S T L +KQ W + PSNI++VPFPTREYTDDEFQSIIK VMG+LYLLGFL
Sbjct: 237 NIELP----SNTSL-IKQSWMQFIPSNIKIVPFPTREYTDDEFQSIIKSVMGLLYLLGFL 291
Query: 186 YPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLF 245
YPISRLISYSVFEKEQKI+E LYMMGLKD IFHLSWFITYA QFAV+SGIITACTMD+LF
Sbjct: 292 YPISRLISYSVFEKEQKIKESLYMMGLKDEIFHLSWFITYALQFAVTSGIITACTMDTLF 351
Query: 246 KYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVP 305
+YSDK++VF YFF FGLSAI LSF ISTFF RAKTAVAVGTLSFLGAFFPYYTVND+AVP
Sbjct: 352 QYSDKSLVFIYFFLFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDQAVP 411
Query: 306 MVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLY 365
M+LK IASLLSPTAFALGS+NFADYERA+VGLRWSN+WRASSGVNFL CLLMMLLD LLY
Sbjct: 412 MILKFIASLLSPTAFALGSINFADYERAYVGLRWSNVWRASSGVNFLACLLMMLLDALLY 471
Query: 366 GVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFA 425
IGLYLDKVLP+ENGVR WNF F C RK+S IKH S + K +++ K C+
Sbjct: 472 CAIGLYLDKVLPRENGVRSPWNFPFLKCSWRKRSSIKHEDCSFDFKNDRR--KVNFCSN- 528
Query: 426 LDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALL 485
D P VEAISLDMKQQE+DGRCIQIR LHKVYATK+GNCCAVNSL+LTLYENQILALL
Sbjct: 529 -DISGPAVEAISLDMKQQELDGRCIQIRNLHKVYATKKGNCCAVNSLRLTLYENQILALL 587
Query: 486 GHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVRE 545
GHNGAGKSTTISMLVGL+PPT+GDALVFGKNI +MDEIRK LGVCPQ DILFPELTV+E
Sbjct: 588 GHNGAGKSTTISMLVGLLPPTSGDALVFGKNIITEMDEIRKQLGVCPQNDILFPELTVKE 647
Query: 546 HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605
HLE+FA+LKGV E LES V EMVDEVGLADKVN VV ALSGGMKRKLSLGIALIG+SKV
Sbjct: 648 HLEIFAILKGVTENFLESAVTEMVDEVGLADKVNTVVGALSGGMKRKLSLGIALIGNSKV 707
Query: 606 VILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
++LDEPTSGMDPYSMRLTWQLIK+IKKGRIILLTTHSMDEA+ LGDRIAIMANGSLKCCG
Sbjct: 708 IVLDEPTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADVLGDRIAIMANGSLKCCG 767
Query: 666 SSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSF 725
SSLFLKHQYGVGYTLTLVKSAP AS AADIVYRH+PSA CVSEVGTEI+FKLPL+SSSSF
Sbjct: 768 SSLFLKHQYGVGYTLTLVKSAPSASIAADIVYRHVPSATCVSEVGTEISFKLPLSSSSSF 827
Query: 726 ESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECIS 785
ESMFREIESC+ SV + ED LGIES+GISVTTLEEVFLRVAGC+ DE+EC
Sbjct: 828 ESMFREIESCM-NSVHNSDRSGNEDKYNLGIESYGISVTTLEEVFLRVAGCDFDETECSK 886
Query: 786 QRNNLVTLD-YVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLN 844
Q V D VS S + APK+I + K G YK + G + T+V+RAC+LI AAVL F+N
Sbjct: 887 QEKLHVLPDSVVSQASPNHAPKQIFHSKPLGKYK-IIGVVSTIVERACSLIFAAVLSFIN 945
Query: 845 FLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLK 904
F +CC+CC IS+S+FW+H KAL IKRA+ ARRDRKTIVFQLLIPA+FLL GLL LKLK
Sbjct: 946 FFSVQCCSCCFISKSIFWEHSKALLIKRAIIARRDRKTIVFQLLIPAVFLLFGLLLLKLK 1005
Query: 905 PHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFP 964
PHPD SVTFTTS+FNPLL GGGGGGPIPFDLSWPIA EV+ Y++GGWIQRFK ++YRFP
Sbjct: 1006 PHPDQQSVTFTTSHFNPLLRGGGGGGPIPFDLSWPIAKEVAWYVEGGWIQRFKPTTYRFP 1065
Query: 965 NAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLH 1024
+ +KALADA++AAGPTLGP LLSMSE+LMSSFNESYQSRYGA+VMDDQN DGSLG+TVLH
Sbjct: 1066 DPDKALADAIEAAGPTLGPTLLSMSEFLMSSFNESYQSRYGAVVMDDQNKDGSLGYTVLH 1125
Query: 1025 NSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIII 1084
N SCQHA PTFIN+MN AILR AT N+NMTI+TRNHPLP T+SQ LQRHDLDAFS ++I+
Sbjct: 1126 NGSCQHAAPTFINLMNAAILRFATLNKNMTIQTRNHPLPMTKSQHLQRHDLDAFSAAVIV 1185
Query: 1085 SIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILF 1144
+IA SF+PASFAV+IVKEREVKAK QQLISGVSVLSYW STY+WDF+SFL PSS AI LF
Sbjct: 1186 NIALSFVPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTYLWDFVSFLLPSSFAITLF 1245
Query: 1145 YIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLIL 1204
YIFG+DQF+G+G PTVL+FL YGLAIASSTYCLTF FSDHTMAQNVVLL+HFFTGL+L
Sbjct: 1246 YIFGMDQFIGKGRFFPTVLMFLEYGLAIASSTYCLTFSFSDHTMAQNVVLLLHFFTGLVL 1305
Query: 1205 MVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVT 1264
MVISFIMGL++ T S NS+LKNFFRLSPGFCFADGLASLALLRQGMK +SDGV DWNVT
Sbjct: 1306 MVISFIMGLIQTTESTNSVLKNFFRLSPGFCFADGLASLALLRQGMKGGSSDGVLDWNVT 1365
Query: 1265 SASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSS 1324
ASICYLG ESI +FLLTLGLELLP K++L TI E W+ ++ T SSYLEPLL+S+
Sbjct: 1366 GASICYLGVESIGFFLLTLGLELLPPRKFSLFTILEPWRAIKNSWHGT-SSYLEPLLEST 1424
Query: 1325 SESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQ 1384
SE+ ++DL+EDIDVQ ERNRVLSGS DNAIIYLRNLRKVYPGGK K+AVHSLTFSV
Sbjct: 1425 SETASIDLDEDIDVQTERNRVLSGSADNAIIYLRNLRKVYPGGKHLSPKIAVHSLTFSVH 1484
Query: 1385 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDAL 1444
GECFGFLGTNGAGKTTTLSM++GEE PTDGTAFIFGKD+ S+PKAARR IGYCPQFDAL
Sbjct: 1485 EGECFGFLGTNGAGKTTTLSMLTGEECPTDGTAFIFGKDVCSNPKAARRHIGYCPQFDAL 1544
Query: 1445 LEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAI 1504
LEYLTVQEHLELYARIKGV YRM DVVMEKLVEFDLL+HA KPSF+LSGGNKRKLSVAI
Sbjct: 1545 LEYLTVQEHLELYARIKGVPGYRMQDVVMEKLVEFDLLRHANKPSFSLSGGNKRKLSVAI 1604
Query: 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIG 1564
AM+GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR+GKTAVILTTHSM EAQALCTRIG
Sbjct: 1605 AMVGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRRGKTAVILTTHSMAEAQALCTRIG 1664
Query: 1565 IMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLL 1624
IMVGG+LRCIGS QHLKTRFGN LELEVKPTEVS VDLE+LC+ IQER+F IP RS+L
Sbjct: 1665 IMVGGRLRCIGSSQHLKTRFGNHLELEVKPTEVSHVDLENLCRFIQERLFHIP-HPRSIL 1723
Query: 1625 DDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQ 1684
DLEVCIG +DSI+SENA+ AEISLS EM++++GRWLGNEERI TL+SS+ D +FGEQ
Sbjct: 1724 SDLEVCIGAVDSITSENASVAEISLSPEMIVMIGRWLGNEERISTLVSSTPVSDGVFGEQ 1783
Query: 1685 LSEQLVRDG 1693
LSEQL RDG
Sbjct: 1784 LSEQLFRDG 1792
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577258|ref|XP_002529511.1| abc transporter, putative [Ricinus communis] gi|223531027|gb|EEF32880.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2556 bits (6625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1285/1674 (76%), Positives = 1440/1674 (86%), Gaps = 41/1674 (2%)
Query: 23 YGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLND 82
YG C VK+C NPKIKGA++FHDQGP+LFDYSIRLNHTWAFSGFPDVKTIMD NGPYLND
Sbjct: 23 YGACGGVKNCSNPKIKGAIIFHDQGPQLFDYSIRLNHTWAFSGFPDVKTIMDVNGPYLND 82
Query: 83 LELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLK 142
LELGV+ IPTMQYSFSGF TLQQ++DSFIIF+AQQ+ ++E +E+P SN S + SL
Sbjct: 83 LELGVSPIPTMQYSFSGFFTLQQLVDSFIIFSAQQSETKTSSEYIELPSSNSSRSSSSLN 142
Query: 143 QPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQK 202
W +SPS IR+VPFPTREYTDDEFQSI+K VMGVLYLLGFLYPISRLISYSVFEKEQK
Sbjct: 143 FTWKNFSPSTIRIVPFPTREYTDDEFQSIVKNVMGVLYLLGFLYPISRLISYSVFEKEQK 202
Query: 203 IREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGL 262
IREGLYMMGLKDG+FHLSWFI YA QFA+SSGIITACTMD+LF YSDK+VVF YFFSFGL
Sbjct: 203 IREGLYMMGLKDGVFHLSWFIAYAFQFALSSGIITACTMDNLFYYSDKSVVFVYFFSFGL 262
Query: 263 SAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFAL 322
SAI LSFFISTFF RAKTAVAVGTLSFLGAFFPYYTVND AV +LKVIASLLSPTAFAL
Sbjct: 263 SAIMLSFFISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDPAVLTILKVIASLLSPTAFAL 322
Query: 323 GSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGV 382
GS+NFADYERAHVGLRWSNMW SSGVNFLVCLLMM LDTLLY GLYLDKVLP+ENGV
Sbjct: 323 GSINFADYERAHVGLRWSNMWLGSSGVNFLVCLLMMWLDTLLYCAAGLYLDKVLPRENGV 382
Query: 383 RYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQ 442
RY WNF+F+NCF R KS IK IN K S + + +D EP VEAISLDMKQ
Sbjct: 383 RYPWNFLFKNCFWRTKSTIK---------INDKSSAKDAYSGGIDVIEPAVEAISLDMKQ 433
Query: 443 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
E+D RCIQ+R L KVYATKRG C AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL
Sbjct: 434 HELDNRCIQVRNLCKVYATKRGKCAAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 493
Query: 503 IPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 562
+PPT+GDALVFGKNI DMDEIR GLGVCPQ+DILFPELTVREHLEMFA LKGV+E+ LE
Sbjct: 494 LPPTSGDALVFGKNILTDMDEIRNGLGVCPQHDILFPELTVREHLEMFATLKGVEEDALE 553
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ + MV+EVGLADK+N VV +LSGGMKRKLSLGIALIG+SKV+ILDEPTSGMDPYSMRL
Sbjct: 554 TAITVMVEEVGLADKMNTVVSSLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRL 613
Query: 623 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 682
TWQLIKKIKKGRIILLTTHSMDEA+ELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL
Sbjct: 614 TWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 673
Query: 683 VKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSK 742
VKSAP AS AADIVYRHIPSA+CVSEVGTE++FKLPLASSS+FE+MFREIESC+R +VS
Sbjct: 674 VKSAPTASVAADIVYRHIPSAICVSEVGTEVSFKLPLASSSAFENMFREIESCMRNAVSN 733
Query: 743 VEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDD 802
+ + E+ +Y+GIES+GISVTTLEEVFLRVAGC+ DE++ Q +N+++ D++ + +
Sbjct: 734 SQTNIMEEKNYIGIESYGISVTTLEEVFLRVAGCDCDETDGFKQSSNILSSDFMIPTAHN 793
Query: 803 QAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFL-IKKCCTCCIISRSMF 861
AP++I + K+ GNY+ + I +V RAC L+VA L +NFL ++ CC CCIISRS F
Sbjct: 794 HAPEKILDSKMLGNYRKIISVISAIVGRACGLMVATFLSLINFLGMQCCCCCCIISRSTF 853
Query: 862 WQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNP 921
WQH KALFIKRA+SARRDRKTIVFQLL+PA+FLL GLL LKLKPHPD S+T TTS+FNP
Sbjct: 854 WQHTKALFIKRAISARRDRKTIVFQLLVPAVFLLFGLLLLKLKPHPDQQSITLTTSHFNP 913
Query: 922 LLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTL 981
LLSGGGGGGPIPFDLS P+A +V++YI GGWIQ FK+++YRFP+++KALADA+ AAGPTL
Sbjct: 914 LLSGGGGGGPIPFDLSLPVAEKVAEYIDGGWIQSFKENAYRFPDSDKALADAIKAAGPTL 973
Query: 982 GPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNT 1041
GPVLLSMSE+LMSSFNESYQSRYGA+VMD QNDDGSLG+T+LHN SCQH+ PT+INVMN
Sbjct: 974 GPVLLSMSEFLMSSFNESYQSRYGAVVMDSQNDDGSLGYTILHNGSCQHSAPTYINVMNA 1033
Query: 1042 AILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVK 1101
AILRLATG +NMTIRTRNHPLP T+SQ LQRHDLDAFS +II+SIAFSFIPASFAVAIVK
Sbjct: 1034 AILRLATGEKNMTIRTRNHPLPMTKSQHLQRHDLDAFSAAIIVSIAFSFIPASFAVAIVK 1093
Query: 1102 EREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPT 1161
EREVKAK QQLISGVSVLSYW ST+IWDF+SFL PSS I+LFYIFGLDQF+GR C LPT
Sbjct: 1094 EREVKAKHQQLISGVSVLSYWASTFIWDFVSFLVPSSFGIVLFYIFGLDQFIGRDCFLPT 1153
Query: 1162 VLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSAN 1221
+ +FL YGLA+ASSTYCLTF FSDHTMAQNVVLLVHFFTGLILMVISFIMGL+E T SAN
Sbjct: 1154 IFLFLEYGLAVASSTYCLTFLFSDHTMAQNVVLLVHFFTGLILMVISFIMGLIETTTSAN 1213
Query: 1222 SLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASIC--YLGCESICYF 1279
++LKNFFR+SPGFCFADGLASLALLRQGMKDK+SD + S+C G +
Sbjct: 1214 NVLKNFFRISPGFCFADGLASLALLRQGMKDKSSDA------SRFSVCDDRFGPGPFAWH 1267
Query: 1280 LLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQ 1339
G +W+G+ S Y EPLL+ S E+ LD +EDIDVQ
Sbjct: 1268 AKREG--------------GNFWRGSS-------SGYSEPLLK-SPEAVALDFDEDIDVQ 1305
Query: 1340 VERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1399
ERNRV+SGSV NAI+YLRNL+KVYPGGK S K+AVHSLTFSVQAGECFGFLGTNGAGK
Sbjct: 1306 TERNRVVSGSVGNAILYLRNLQKVYPGGK-SGKKIAVHSLTFSVQAGECFGFLGTNGAGK 1364
Query: 1400 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR 1459
TTTLSM+SGEE PTDGTAFIFGKDI S+PK+ R+ IGYCPQFDALLE+LTV+EHLELYAR
Sbjct: 1365 TTTLSMLSGEESPTDGTAFIFGKDIGSNPKSVRQHIGYCPQFDALLEFLTVREHLELYAR 1424
Query: 1460 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1519
IKGVA+Y + DVVMEKLVEFDLLKHA KPSF LSGGNKRKLSVAIAMIGDPPIVILDEPS
Sbjct: 1425 IKGVADYSITDVVMEKLVEFDLLKHADKPSFVLSGGNKRKLSVAIAMIGDPPIVILDEPS 1484
Query: 1520 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579
TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQH
Sbjct: 1485 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQH 1544
Query: 1580 LKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISS 1639
LKTRFGN LELEVKP EVS V+LE+LCQIIQ R+ +IPS RSLL+DLE+CIG +D I+S
Sbjct: 1545 LKTRFGNHLELEVKPAEVSPVELENLCQIIQGRLLNIPSYPRSLLNDLEICIGAVDFITS 1604
Query: 1640 ENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
ENA+AAEI LS+EM+L++G+WLGNEER+ TL SSSS+ D EQL EQLVRDG
Sbjct: 1605 ENASAAEIRLSKEMILMIGQWLGNEERVNTLFSSSSTSDGGSAEQLGEQLVRDG 1658
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79595267|ref|NP_850354.2| ABC transporter A family member 1 [Arabidopsis thaliana] gi|75327922|sp|Q84M24.2|AB1A_ARATH RecName: Full=ABC transporter A family member 1; Short=ABC transporter ABCA.1; Short=AtABCA1; AltName: Full=ABC one homolog protein 1; Short=AtAOH1 gi|45504175|dbj|BAC75958.2| AtABCA1 [Arabidopsis thaliana] gi|330254923|gb|AEC10017.1| ABC transporter A family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2494 bits (6465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1238/1685 (73%), Positives = 1432/1685 (84%), Gaps = 40/1685 (2%)
Query: 23 YGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLND 82
YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IMDTNGPY+ND
Sbjct: 133 YGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIMDTNGPYIND 192
Query: 83 LELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLK 142
LE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ + SNLS + L +
Sbjct: 193 LEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQN------NDLPLSHSNLS-SALRFE 245
Query: 143 QPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQK 202
PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISRLISYSVFEKEQK
Sbjct: 246 LPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVFEKEQK 305
Query: 203 IREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGL 262
IREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDKT+VFTYFF FGL
Sbjct: 306 IREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKTLVFTYFFLFGL 365
Query: 263 SAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFAL 322
SAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV+ASLLSPTAFAL
Sbjct: 366 SAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKVVASLLSPTAFAL 425
Query: 323 GSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGV 382
GS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GLYLDKVLP+ENGV
Sbjct: 426 GSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLPRENGV 485
Query: 383 RYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECAFALDACEPVVEA 435
RY WNFIF F RKK+ +++ + A++++N+ + +PV E+
Sbjct: 486 RYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG-----------EPFDPVFES 534
Query: 436 ISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTT 495
ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLGHNGAGKSTT
Sbjct: 535 ISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTT 594
Query: 496 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG 555
ISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTVREHLEMFAVLKG
Sbjct: 595 ISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKG 654
Query: 556 VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
V+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+ILDEPTSGM
Sbjct: 655 VEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGM 714
Query: 616 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKCCGSS+FLKH YG
Sbjct: 715 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYG 774
Query: 676 VGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESC 735
VGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS FE+MFREIESC
Sbjct: 775 VGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESC 834
Query: 736 IRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDY 795
++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD + Q + V+ D
Sbjct: 835 MKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIED--KQEDIFVSPDT 892
Query: 796 VSA-------ESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIK 848
S+ + PK +++C G I+T V +A LIVAAV + F+
Sbjct: 893 KSSLVCIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIVAAVWTLIGFISI 946
Query: 849 KCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPD 908
+CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL GLLFL+LKPHPD
Sbjct: 947 QCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPD 1006
Query: 909 MLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEK 968
S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ + +SY+FPN ++
Sbjct: 1007 QKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNTSYKFPNPKE 1066
Query: 969 ALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSC 1028
ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DGSLG+TVLHN +C
Sbjct: 1067 ALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSLGYTVLHNGTC 1126
Query: 1029 QHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAF 1088
QHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLDAFS +II++IAF
Sbjct: 1127 QHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAIIVNIAF 1186
Query: 1089 SFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFG 1148
SFIPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS+ AIILFY FG
Sbjct: 1187 SFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFG 1246
Query: 1149 LDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVIS 1208
L+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+VHFF+GLILMVIS
Sbjct: 1247 LEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVIS 1306
Query: 1209 FIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASI 1268
F+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S GVF+WNVT ASI
Sbjct: 1307 FVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASI 1366
Query: 1269 CYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESD 1328
CYLG ESI YFL+TLGLEL+P K +I EWW+ + SS EPLL+ S+ +
Sbjct: 1367 CYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKDSTGAI 1426
Query: 1329 TLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGEC 1388
+ D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV SLTFSVQAGEC
Sbjct: 1427 STDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGEC 1486
Query: 1389 FGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL 1448
FGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYCPQFDAL EYL
Sbjct: 1487 FGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYL 1546
Query: 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508
TV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKRKLSVAIAMIG
Sbjct: 1547 TVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIG 1606
Query: 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1568
DPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVG
Sbjct: 1607 DPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVG 1666
Query: 1569 GQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLE 1628
G+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL DLE
Sbjct: 1667 GRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLE 1726
Query: 1629 VCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQ 1688
VCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +QLSEQ
Sbjct: 1727 VCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQ 1786
Query: 1689 LVRDG 1693
L RDG
Sbjct: 1787 LFRDG 1791
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|33350934|gb|AAK39643.3| ATP-binding cassette transporter AtABCA1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2492 bits (6459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1236/1683 (73%), Positives = 1431/1683 (85%), Gaps = 36/1683 (2%)
Query: 23 YGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLND 82
YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IMDTNGPY+ND
Sbjct: 133 YGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIMDTNGPYIND 192
Query: 83 LELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLK 142
LE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ + SNLS + L +
Sbjct: 193 LEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQN------NDLPLSHSNLS-SALRFE 245
Query: 143 QPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQK 202
PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISRLISYSVFEKEQK
Sbjct: 246 LPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVFEKEQK 305
Query: 203 IREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGL 262
IREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDKT+VFTYFF FGL
Sbjct: 306 IREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKTLVFTYFFLFGL 365
Query: 263 SAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFAL 322
SAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV+ASLLSPTAFAL
Sbjct: 366 SAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKVVASLLSPTAFAL 425
Query: 323 GSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGV 382
GS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GLYLDKVLP+ENGV
Sbjct: 426 GSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLPRENGV 485
Query: 383 RYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECAFALDACEPVVEA 435
RY WNFIF F RKK+ +++ + A++++N+ + +PV E+
Sbjct: 486 RYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG-----------EPFDPVFES 534
Query: 436 ISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTT 495
ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLGHNGAGKSTT
Sbjct: 535 ISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTT 594
Query: 496 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG 555
ISMLVGL+PPT+GDAL+ +I +MDEIRK LGVCPQ+DILFPELTVREHLEMFAVLKG
Sbjct: 595 ISMLVGLLPPTSGDALILENSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKG 654
Query: 556 VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
V+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+ILDEPTSGM
Sbjct: 655 VEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGM 714
Query: 616 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKCCGSS+FLKH YG
Sbjct: 715 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYG 774
Query: 676 VGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESC 735
VGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS FE+MFREIESC
Sbjct: 775 VGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESC 834
Query: 736 IRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLD----ESECISQRNNLV 791
++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD + + +
Sbjct: 835 MKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDKQEDIFVSPDTKS 894
Query: 792 TLDYV-SAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKC 850
+L Y+ S + PK +++C G I+T V +A LIVAAV + F+ +C
Sbjct: 895 SLVYIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIVAAVWTLIGFISIQC 948
Query: 851 CTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDML 910
C C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL GLLFL+LKPHPD
Sbjct: 949 CGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQK 1008
Query: 911 SVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKAL 970
S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ + +SY+FPN ++AL
Sbjct: 1009 SITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVTQYIEGGWIQPLRNTSYKFPNPKEAL 1068
Query: 971 ADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQH 1030
ADA+DAAGPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DGSLG+TVLHN +CQH
Sbjct: 1069 ADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSLGYTVLHNGTCQH 1128
Query: 1031 AGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSF 1090
AGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLDAFS +II++IAFSF
Sbjct: 1129 AGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAIIVNIAFSF 1188
Query: 1091 IPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLD 1150
IPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS+ AIILFY FGL+
Sbjct: 1189 IPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLE 1248
Query: 1151 QFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFI 1210
QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+VHFF+GLILMVISF+
Sbjct: 1249 QFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFV 1308
Query: 1211 MGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICY 1270
MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S GVF+WNVT ASICY
Sbjct: 1309 MGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASICY 1368
Query: 1271 LGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTL 1330
LG ESI YFL+TLGLEL+P K +I EWW+ + SS EPLL+ S+ + +
Sbjct: 1369 LGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKDSTGAIST 1428
Query: 1331 DLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1390
D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV SLTFSVQAGECFG
Sbjct: 1429 DMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFG 1488
Query: 1391 FLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTV 1450
FLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYCPQFDAL EYLTV
Sbjct: 1489 FLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTV 1548
Query: 1451 QEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510
+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKRKLSVAIAMIGDP
Sbjct: 1549 KEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDP 1608
Query: 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
PIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVGG+
Sbjct: 1609 PIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGR 1668
Query: 1571 LRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVC 1630
LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL DLEVC
Sbjct: 1669 LRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVC 1728
Query: 1631 IGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLV 1690
IG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +QLSEQL
Sbjct: 1729 IGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLF 1788
Query: 1691 RDG 1693
RDG
Sbjct: 1789 RDG 1791
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827817|ref|XP_002881791.1| ATPase, coupled to transmembrane movement of substances [Arabidopsis lyrata subsp. lyrata] gi|297327630|gb|EFH58050.1| ATPase, coupled to transmembrane movement of substances [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2475 bits (6414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1235/1718 (71%), Positives = 1431/1718 (83%), Gaps = 57/1718 (3%)
Query: 14 KNWLLKVHLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIM 73
+ ++ H YG C++V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IM
Sbjct: 125 ETYITSAH-YGLCTEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIM 183
Query: 74 DTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSN 133
DTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ N+++P S+
Sbjct: 184 DTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQ--------NIDLPLSH 235
Query: 134 LS-GTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLI 192
+ G+ LS + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISRLI
Sbjct: 236 SNLGSALSFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLI 295
Query: 193 SYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQ------------------------ 228
SYSVFEKEQKIREGLYMMGLKD IFHLSWFITYA Q
Sbjct: 296 SYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQAAFSVVNNIDFSWKKQTLYFFRYI 355
Query: 229 -FAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTL 287
FA+ SGIITACTM SLFKYSDKT+VFTYFF FGLSAI LSF ISTFF RAKTAVAVGTL
Sbjct: 356 VFALCSGIITACTMGSLFKYSDKTLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTL 415
Query: 288 SFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRWSNMWRASS 347
+FLGAFFPYYTVNDE+V MVLKV+ASLLSPTAFALGS+NFADYERAHVGLRWSN+WRASS
Sbjct: 416 TFLGAFFPYYTVNDESVSMVLKVVASLLSPTAFALGSINFADYERAHVGLRWSNIWRASS 475
Query: 348 GVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSS 407
GV+F VCLLMMLLD++LY +GLYLDKVLP+ENGVRY WNFIF CF RKK ++ +
Sbjct: 476 GVSFFVCLLMMLLDSILYCALGLYLDKVLPRENGVRYPWNFIFSKCFGRKKKNFQNRIPG 535
Query: 408 AEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCC 467
E + + + + + +PV+E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCC
Sbjct: 536 LETDMFPEDVELNQG----EPFDPVIESISLEMRQQELDGRCIQVRNLHKVYASRRGNCC 591
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
AVNSL+LTLYENQIL+LLGHNGAGKSTTISMLVGL+PPT+GDAL+ G +I +MDEIRK
Sbjct: 592 AVNSLRLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKE 651
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
LGVCPQ+DILFPELTVREHLEMFAVLKGV+E+ L+S V +M +EVGL+DK++ +VRALSG
Sbjct: 652 LGVCPQHDILFPELTVREHLEMFAVLKGVEEDSLKSTVVDMAEEVGLSDKISTLVRALSG 711
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAE 647
GMKRKLSLGIALIG+SK++ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAE
Sbjct: 712 GMKRKLSLGIALIGNSKIIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAE 771
Query: 648 ELGDRIAIMANGSLKCCGSS-LFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCV 706
ELGDRI IMANGSLKCCGSS +FLKH YGVGYTLTLVK++P S AA IV+RHIPSA CV
Sbjct: 772 ELGDRIGIMANGSLKCCGSSSIFLKHHYGVGYTLTLVKTSPAVSVAARIVHRHIPSATCV 831
Query: 707 SEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTL 766
SEVG EI+FKLPLAS FE+MFREIES ++ SV + + ED+DY GI+S+GISVTTL
Sbjct: 832 SEVGNEISFKLPLASLPCFENMFREIESYMKNSVDRSKISEIEDSDYPGIQSYGISVTTL 891
Query: 767 EEVFLRVAGCNLD----ESECISQRNNLVTLDYV-SAESDDQAPKRISNCKLFGNYKWVF 821
EEVFLRVAGCNLD + E + +L + S + PK + +C
Sbjct: 892 EEVFLRVAGCNLDIEDKQEEIFVSPDTKASLVCIGSNQKSIMQPKLLESCNEGAR----- 946
Query: 822 GFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRK 881
I+T V +AC LIV AV + F+ +CC C IISR+MFW+HCKALFIKRA SA RDRK
Sbjct: 947 -VIITSVAKACRLIVVAVWTLIGFISMQCCGCSIISRTMFWRHCKALFIKRARSASRDRK 1005
Query: 882 TIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIA 941
T+ FQ +IPA+FLL GLLFL+LKPHPD S+T TT+ FNPLLSG GGGGP+PFDLS PIA
Sbjct: 1006 TVAFQFIIPAVFLLFGLLFLQLKPHPDQKSITLTTAYFNPLLSGNGGGGPVPFDLSEPIA 1065
Query: 942 NEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQ 1001
EVS+YI+GGWIQ + +SY+FPN ++ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQ
Sbjct: 1066 KEVSQYIEGGWIQHLRNTSYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQ 1125
Query: 1002 SRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHP 1061
SRYGAI+MD Q+ DGSLG+TVLHN +CQHAGP +INVM+ AILRLATGN+NMTI+TRNHP
Sbjct: 1126 SRYGAILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHP 1185
Query: 1062 LPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSY 1121
LP T++Q+LQRHDLDAFS +II++IAFSFIPASFAV IVKEREVKAK QQLISGVSVLSY
Sbjct: 1186 LPPTKTQRLQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSY 1245
Query: 1122 WTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTF 1181
W STY+WDFISFLFPS+ AIILFY FGL+QF+G G LPTVL+ L YGLAIASSTYCLTF
Sbjct: 1246 WLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTF 1305
Query: 1182 FFSDHTMAQ------NVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFC 1235
FF++H+MAQ NV+L+VHFF+GLILMVISF+MGL+ AT SANS LKNFFRLSPGFC
Sbjct: 1306 FFTEHSMAQATSSYSNVILMVHFFSGLILMVISFVMGLIPATASANSYLKNFFRLSPGFC 1365
Query: 1236 FADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTL 1295
F+DGLASLALLRQGMKDK+S GVF+WNVT ASICYLG ESI YFL+TLGLEL+P K
Sbjct: 1366 FSDGLASLALLRQGMKDKSSHGVFEWNVTGASICYLGLESIFYFLVTLGLELMPFQKVMS 1425
Query: 1296 MTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAII 1355
+I EWW+ + SS EPLL+ S + + D+ +DIDVQ ER+RV+SG DN +
Sbjct: 1426 FSIGEWWQNFKAFKQGAGSSSTEPLLKDSPGAISADMEDDIDVQEERDRVISGLTDNTMF 1485
Query: 1356 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG 1415
YL+NLRKVYPG K KVAV SLTFSVQAGECFGFLGTNGAGKTTTLSM+SGEE PT G
Sbjct: 1486 YLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSG 1545
Query: 1416 TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1475
TAFIFGKDI + PKA R+ IGYCPQFDAL EYLTV+EHLELYARIKGV +YR+D+VV EK
Sbjct: 1546 TAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDYRIDNVVTEK 1605
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
LVEFDLLKH+ KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP+AKRFMW+VIS
Sbjct: 1606 LVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVIS 1665
Query: 1536 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPT 1595
RLSTR GKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHLKTR+GN LELEVKP
Sbjct: 1666 RLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPN 1725
Query: 1596 EVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLL 1655
EVSS +LE+ CQIIQ+ +F++P+Q RSLL DLEVCIG DSI+ + A+A+EISLS EM+
Sbjct: 1726 EVSSEELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQ 1785
Query: 1656 IVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
+ ++LGNE+R+ TL+ D F +QLSEQL RDG
Sbjct: 1786 SIAKFLGNEQRVSTLVPPVPEEDVRFEDQLSEQLFRDG 1823
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79324883|ref|NP_001031526.1| ABC transporter A family member 1 [Arabidopsis thaliana] gi|330254924|gb|AEC10018.1| ABC transporter A family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2203 bits (5708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1140/1739 (65%), Positives = 1339/1739 (76%), Gaps = 161/1739 (9%)
Query: 14 KNWLLKVHLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIM 73
+ ++ H YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IM
Sbjct: 119 ETYITSAH-YGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIM 177
Query: 74 DTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSN 133
DTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ + SN
Sbjct: 178 DTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQ------NNDLPLSHSN 231
Query: 134 LSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLIS 193
LS L + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VM
Sbjct: 232 LSSA-LRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVM----------------- 273
Query: 194 YSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVV 253
GL++ D ++F + + S +I+
Sbjct: 274 ------------GLFLFKYSDKTLVFTYFFLFGLSAIMLSFMIST--------------- 306
Query: 254 FTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIAS 313
FF+ +A+ AVGTL+FLGAFFPYYTVNDE+V MVLKV+AS
Sbjct: 307 ---FFTRAKTAV-----------------AVGTLTFLGAFFPYYTVNDESVSMVLKVVAS 346
Query: 314 LLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLD 373
LLSPTAFALGS+NFADYERAHVGLRWSN+WRASSGV+F VCLLMMLLD++LY +GLYLD
Sbjct: 347 LLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLD 406
Query: 374 KVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSS-------AEVKINKKLSKEKECAFAL 426
KVLP+ENGVRY WNFIF F RKK+ +++ + A++++N+
Sbjct: 407 KVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQG----------- 455
Query: 427 DACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLG 486
+ +PV E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLG
Sbjct: 456 EPFDPVFESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLG 515
Query: 487 HNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH 546
HNGAGKSTTISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTVREH
Sbjct: 516 HNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREH 575
Query: 547 LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606
LEMFAVLKGV+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+
Sbjct: 576 LEMFAVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVI 635
Query: 607 ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI IMANGSLKCCGS
Sbjct: 636 ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGS 695
Query: 667 SLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFE 726
S+FLKH YGVGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS FE
Sbjct: 696 SIFLKHHYGVGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFE 755
Query: 727 SMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQ 786
+MFREIESC++ S D+DY GI+S+GISVTTLEEVFLRVAGCNLD + Q
Sbjct: 756 NMFREIESCMKNS----------DSDYPGIQSYGISVTTLEEVFLRVAGCNLDIED--KQ 803
Query: 787 RNNLVTLDYVSA-------ESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAV 839
+ V+ D S+ + PK +++C G I+T V +A LIVAAV
Sbjct: 804 EDIFVSPDTKSSLVCIGSNQKSSMQPKLLASCNDGA------GVIITSVAKAFRLIVAAV 857
Query: 840 LGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLL 899
+ F+ +CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+FLL GLL
Sbjct: 858 WTLIGFISIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLL 917
Query: 900 FLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQS 959
FL+LKPHPD S+T TT+ FNPLLSG GGGGPIPFDLS PIA EV++YI+GGWIQ + +
Sbjct: 918 FLQLKPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNT 977
Query: 960 SYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQ-SRYGAIVMDDQND-DGS 1017
SY+FPN ++ALADA+DAAGPTLGP LLSMSE+LMSSF++SYQ SR G D N DGS
Sbjct: 978 SYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSSREGLSSHDSCNHPDGS 1037
Query: 1018 LGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDA 1077
LG+TVLHN +CQHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLDA
Sbjct: 1038 LGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDA 1097
Query: 1078 FSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPS 1137
FS +II++IAFSFIPASFAV IVKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS
Sbjct: 1098 FSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPS 1157
Query: 1138 SCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQ------- 1190
+ AIILFY FGL+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQ
Sbjct: 1158 TFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQATSSYSV 1217
Query: 1191 -------------NVVLLVHFFTGLILMVISFIMGLLEATRSANSLLK----------NF 1227
NV+L+VHFF+GLILMVISF+MGL+ AT SANS LK NF
Sbjct: 1218 LLPISLFVFSFSSNVILMVHFFSGLILMVISFVMGLIPATASANSYLKELILFRYALQNF 1277
Query: 1228 FRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCE---SIC-YFLLTL 1283
FRLSPGFCF+DGLASLALLRQGMKDK+S GVF+WNVT ASICYLG E C Y +L L
Sbjct: 1278 FRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASICYLGLEVRLEYCRYSMLLL 1337
Query: 1284 GLELLPSHKWTLMTIKEWWKGTR---HRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQV 1340
K +L+ + T R+ +T S EPLL+ S+ + + D+ +DIDVQ
Sbjct: 1338 SFFHGIDTKLSLIYTIGASRLTELIYDRVYSTSFS-TEPLLKDSTGAISTDMEDDIDVQE 1396
Query: 1341 ERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKT 1400
ER+RV+SG DN ++YL+NLRKVYPG K KVAV SLTFSVQAGECFGFLGTNGAGKT
Sbjct: 1397 ERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKT 1456
Query: 1401 TTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1460
TTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYCPQFDAL EYLTV+EHLELYARI
Sbjct: 1457 TTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARI 1516
Query: 1461 KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
KGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST
Sbjct: 1517 KGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1576
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
GMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIMVGG+LRCIGSPQHL
Sbjct: 1577 GMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHL 1636
Query: 1581 KTRFGNFLELE------VKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGI 1634
KTR+GN LELE VKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL DLEVCIG
Sbjct: 1637 KTRYGNHLELEVPFYNGVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVS 1696
Query: 1635 DSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +QLSEQL RDG
Sbjct: 1697 DSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDG 1755
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509697|ref|XP_003625137.1| ATP-binding cassette sub-family A member [Medicago truncatula] gi|355500152|gb|AES81355.1| ATP-binding cassette sub-family A member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1861 bits (4821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 938/1304 (71%), Positives = 1065/1304 (81%), Gaps = 72/1304 (5%)
Query: 460 ATKRGNCCAVNSLQLTLYENQILAL-------LGHNGAGKSTTISMLVGLIPPTTGDALV 512
TK + V ++ ++ +++L GHNGAGKSTTISMLVGL+PPT+GDAL+
Sbjct: 751 GTKMAHVECVKKIEKKIHYKYVVSLSETPPTNFGHNGAGKSTTISMLVGLLPPTSGDALI 810
Query: 513 FGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 572
FGKNI +D+DEIRK LGVCPQ+DILFPELTVREHLE+FA+LKGV E+ LESVV M DEV
Sbjct: 811 FGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVDEDTLESVVINMADEV 870
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
GLADK+N VVR+LSGGMKRKLSLGIALIG+SKV+ILDEPTSGMDPYSMRLTWQLIKKIKK
Sbjct: 871 GLADKINTVVRSLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKK 930
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS-------------------------- 666
GRIILLTTHSMDEA+ELGDRIAIMANGSLKCCG
Sbjct: 931 GRIILLTTHSMDEADELGDRIAIMANGSLKCCGRLIPFSYFSYILYTHLPRPKLPRWPPE 990
Query: 667 -----------------------SLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSA 703
SLFLKH YGVGYTLTLVKSAP AS A DIVYR++P+A
Sbjct: 991 EPPKVRELLLIELRRKVLIGREISLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRYVPTA 1050
Query: 704 LCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISV 763
C+SEVGTEI+F+LP+ASSS+FE MFREIESC++K VS +E + D GIES+GISV
Sbjct: 1051 TCISEVGTEISFRLPMASSSTFERMFREIESCMKKPVSSMEISGNCEKDSHGIESYGISV 1110
Query: 764 TTLEEVFLRVAGCNLDESECISQRN-NLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFG 822
TTLEEVFLRVAGC+ DE EC + N +L++ VS S+D+ +I K+ GNYK + G
Sbjct: 1111 TTLEEVFLRVAGCDYDEDECFEENNRSLISEAVVSLPSNDRPSTKICYYKVCGNYKKILG 1170
Query: 823 FIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKT 882
F+ T+V RAC LI A V+ F+NF+ +CC+CC+I+ S FWQH KAL IKRA+SARRD KT
Sbjct: 1171 FMSTMVGRACGLIFATVISFVNFISLQCCSCCLITTSTFWQHSKALIIKRAISARRDHKT 1230
Query: 883 IVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIAN 942
I+FQL+IPAIFL +GLLFL+LKPHPD +S+T +TS FNPLLSGGGGGGPIPF+LS+PIA
Sbjct: 1231 IIFQLMIPAIFLFIGLLFLELKPHPDQISLTLSTSYFNPLLSGGGGGGPIPFNLSFPIAE 1290
Query: 943 EVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQS 1002
EV++ ++GGWIQR SSY+FPN+EKAL DAV+AAGP LGP LL+MSEYLMSSFNESYQS
Sbjct: 1291 EVAQNVKGGWIQRCNSSSYKFPNSEKALVDAVEAAGPALGPALLNMSEYLMSSFNESYQS 1350
Query: 1003 RYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPL 1062
RYGAIVMDDQN DGSLG+TVLHN SCQHA PTFIN+MN+AILRLAT N N TI+TRNHPL
Sbjct: 1351 RYGAIVMDDQNTDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHNVNATIQTRNHPL 1410
Query: 1063 PTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYW 1122
P TQSQ LQRHDLDAFS +II++IAFSFIPASFAV+IVKEREVKAK QQLISGVSVLSYW
Sbjct: 1411 PMTQSQHLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYW 1470
Query: 1123 TSTYIWDFISFLFPSSCAIILFYIF-------------GLDQFVGRGCLLPTVLIFLGYG 1169
ST+IWDF+SFLFP+S AI+LFYIF GLDQFVG L+PT+++ L YG
Sbjct: 1471 ISTFIWDFVSFLFPASFAIVLFYIFVFNDNTCLLNTVIGLDQFVGGVSLIPTIIMLLEYG 1530
Query: 1170 LAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFR 1229
LAIASSTYCLTFFF DHT+AQNVVLLVHFF+GLILMVISFIMGLL +T SANS LKNFFR
Sbjct: 1531 LAIASSTYCLTFFFFDHTVAQNVVLLVHFFSGLILMVISFIMGLLPSTISANSFLKNFFR 1590
Query: 1230 LSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLP 1289
+SPGFCFADGLASLALLRQGMKDKTSDGV+DWNVT ASICYL ES YFLLTLGLE+ P
Sbjct: 1591 ISPGFCFADGLASLALLRQGMKDKTSDGVYDWNVTGASICYLAVESFIYFLLTLGLEIYP 1650
Query: 1290 SHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGS 1349
S K T IK+WW NT SYLEPLL+SS E+ DLNED+DV+ ERNRVLSGS
Sbjct: 1651 SLKLTPFKIKKWWGKINIFPHNT--SYLEPLLESSPETFVTDLNEDVDVKTERNRVLSGS 1708
Query: 1350 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1409
+DNAIIYLRNLRKVY K KVAV SLTFSVQ GECFGFLGTNGAGKTTTLSM+ GE
Sbjct: 1709 IDNAIIYLRNLRKVYSEEKNHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGE 1768
Query: 1410 EYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
E P+DGTAFIFGKDI S PKAAR+ IGYCPQFDALLE+LTV+EHLELYARIK V +Y +D
Sbjct: 1769 ESPSDGTAFIFGKDICSHPKAARKYIGYCPQFDALLEFLTVKEHLELYARIKSVPDYTID 1828
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
+VVMEKLVEFDLLKHA KPSF+LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF
Sbjct: 1829 NVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1888
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLE 1589
MW+VISR+STR+GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN LE
Sbjct: 1889 MWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNHLE 1948
Query: 1590 LEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISL 1649
LEVKPTEVSSVDL+ LCQ IQE +FD+PSQ RSLL+DLE+CIGG DS++S N + AEISL
Sbjct: 1949 LEVKPTEVSSVDLQTLCQTIQEILFDVPSQPRSLLNDLEICIGGADSVTSGNTSIAEISL 2008
Query: 1650 SQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
+ EM+ ++GRWLGNEER+KTL + D EQLSEQL+RDG
Sbjct: 2009 TSEMIGLIGRWLGNEERVKTLTCCTPVYDGASQEQLSEQLLRDG 2052
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302810659|ref|XP_002987020.1| hypothetical protein SELMODRAFT_446818 [Selaginella moellendorffii] gi|300145185|gb|EFJ11863.1| hypothetical protein SELMODRAFT_446818 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 1768 bits (4580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1692 (53%), Positives = 1177/1692 (69%), Gaps = 105/1692 (6%)
Query: 18 LKVHLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNG 77
+K YGT + L PKIK AVVF +QGP +DYSIRLNH+WAF GFPDV+TIMDT G
Sbjct: 129 IKSKTYGTGKK----LYPKIKAAVVFFEQGPCTYDYSIRLNHSWAFQGFPDVRTIMDTTG 184
Query: 78 PYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGT 137
Y++DL LGV+++ T +Y +SGFLTLQQV+DS++I +QQ E+ + N S
Sbjct: 185 AYVDDLILGVDLVSTYEYGYSGFLTLQQVIDSYLILLSQQQPELCHYESRKRVLKNES-- 242
Query: 138 HLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVF 197
H ++K P I + PFPTREYTDDEFQSI+K +G+LYLL FLYP+SRLIS SV
Sbjct: 243 HENVKLVTENVFPKYISVAPFPTREYTDDEFQSIVKNFLGILYLLAFLYPVSRLISCSVL 302
Query: 198 EKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYF 257
EKE+ I+EG+ MMGL+ F++SWFI Y QFAVSS II TM+S+F YS +VVF YF
Sbjct: 303 EKEKGIKEGMLMMGLEGTNFYVSWFIIYMLQFAVSSLIIVLVTMNSIFAYSSMSVVFVYF 362
Query: 258 FSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIASLLSP 317
F FGLSAI L F IS FF RAKTA AVGTLSFL AFFPYY V D V + +K+IASLLSP
Sbjct: 363 FLFGLSAIALCFLISVFFTRAKTATAVGTLSFLAAFFPYYVVVDTDVSLSIKLIASLLSP 422
Query: 318 TAFALGSVNFADYERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLP 377
TAFALG+VNFADYER HVG+RWSN+W+ SSGV+FL+C++ + +D LLY V+ Y ++VL
Sbjct: 423 TAFALGTVNFADYERGHVGVRWSNIWKESSGVSFLLCMVFLAVDALLYLVLAWYFNQVLK 482
Query: 378 KENG---VRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVE 434
G R WN C ++ + + + P E
Sbjct: 483 HSCGYLTCRMLWNL----CRCKRNNEEMDEENEDMI--------------------PQSE 518
Query: 435 AISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST 494
+ QQE D +C+ I+ L KV+ T C AVNSL L+L E QILALLGHNGAGKST
Sbjct: 519 IEPFEFDQQEFD-KCVHIKNLRKVFVTAGRECTAVNSLSLSLCEGQILALLGHNGAGKST 577
Query: 495 TISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK 554
TI MLVGL+ PT+GDA V GK+I DM IRK +GVCPQ D+LF ELTVREHL +F LK
Sbjct: 578 TIGMLVGLVAPTSGDAFVLGKSIKTDMMHIRKQIGVCPQNDLLFQELTVREHLLLFGSLK 637
Query: 555 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
V +L++ V M+ E+GL DK + +V LSGGMKRKLS+ +AL+G SKVVILDEPTSG
Sbjct: 638 SVDPSVLQTEVDSMISEIGLLDKSDALVGHLSGGMKRKLSVALALLGGSKVVILDEPTSG 697
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674
MDPYSMRLTW+L+K+ KK RIILLTTHSMDEA+ LGDRIAIM++G+L+CCGSSLFLKH+Y
Sbjct: 698 MDPYSMRLTWRLLKRHKKDRIILLTTHSMDEADVLGDRIAIMSSGNLRCCGSSLFLKHRY 757
Query: 675 GVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIES 734
GVGYTLTLVK + ++ + RH+PSA +S+VG+E++++LPLAS+S+F +F E+E+
Sbjct: 758 GVGYTLTLVKGQSGTESISEAILRHVPSATLLSDVGSELSYRLPLASTSTFHLLFEELEA 817
Query: 735 CIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAG--------------CNLDE 780
S + + +ES+GISVTTLEEVFLRVA CN +
Sbjct: 818 HATLSDLSGSGEEPGGINSWDVESYGISVTTLEEVFLRVASGEAPQQEVRPLQKTCNAEA 877
Query: 781 SECISQRNNLVTLDYVSAESDDQAPK-RISNCKLFGNYKWVFGFIVTVVQRACTLIVAAV 839
SE N + D + +S+D A + + Y W+ +C I+ V
Sbjct: 878 SEA----NASCSDDRIDVDSEDGAASFEVKKSR----YSWI---------SSCVGIITRV 920
Query: 840 LGFLNFLIKKCCTCCI-ISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGL 898
L L + ++ + RS+F +H +ALF KR +SA RD+KT+VFQLL+P++FL +GL
Sbjct: 921 LASLVSVFERYPIIHLGKRRSLFGRHFRALFKKRGLSAMRDKKTVVFQLLVPSLFLFLGL 980
Query: 899 LFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQ 958
L L KPHPD SVT TTS FNPL++G GGGGPIPF+L+ PIA +V++Y+ GGWIQ+ +
Sbjct: 981 LLLTTKPHPDQPSVTLTTSLFNPLVTGSGGGGPIPFNLTLPIAQKVARYVSGGWIQKEEP 1040
Query: 959 SSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSL 1018
Y+FP+++ L +A+DAAGP+LGP L+SMSEYLM+SFNE+Y+SRYGA+VMD Q+ DGSL
Sbjct: 1041 RVYKFPDSDTVLQNAIDAAGPSLGPALVSMSEYLMTSFNETYESRYGAVVMDRQHSDGSL 1100
Query: 1019 GFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAF 1078
+ VLHN++CQHA PT+INV+N AIL++AT N + +RTRNHPLP T SQ QR D++AF
Sbjct: 1101 AYAVLHNTTCQHAAPTYINVVNNAILKMATNNSKLELRTRNHPLPMTVSQMAQRRDINAF 1160
Query: 1079 SVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSS 1138
S II+++A+SFIPASFAVAIVKEREVKAK QQLISGVS+++YW STY+WD +S+L P+
Sbjct: 1161 SAGIIVNVAYSFIPASFAVAIVKEREVKAKHQQLISGVSLMAYWISTYVWDVLSYLLPAG 1220
Query: 1139 CAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHF 1198
A+ LF+IFG+++F+G+ +L T ++ + YG AIA+STYCLTFFF+DH++AQNV+LL+HF
Sbjct: 1221 LAVGLFFIFGMEEFIGKESILATSIMMVAYGPAIAASTYCLTFFFTDHSLAQNVILLIHF 1280
Query: 1199 FTGLILMVISFIMGLLEATRSANSLLK--------NFFRLSPGFCFADGLASLALLRQGM 1250
F+GLILMV+SFIMG+L AT+ N +LK N FRLSPGFC ADGLASLAL +Q +
Sbjct: 1281 FSGLILMVVSFIMGVLRATKGVNRVLKVIKKNFEQNIFRLSPGFCLADGLASLALRKQSL 1340
Query: 1251 KDKTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPS----HKWTLMTIKEWWKGTR 1306
K + F WN T ASI YL CESI YFLL L +ELLPS W +W R
Sbjct: 1341 KPSSQKEPFAWNTTGASITYLCCESILYFLLVLAMELLPSPYILTAWCKSCFGKW---RR 1397
Query: 1307 HRLCNT--PSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVY 1364
+ N+ + EP L D ED+DV ER RV SG ++++ L LRK +
Sbjct: 1398 NLFANSGRAGTLSEPFLPEEHLED-----EDLDVARERRRVQSGGSKDSVVKLVELRKTF 1452
Query: 1365 PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1424
P G R KVAV +L+F+V AGECFGFLGTNGAGKTTTLSM+ GE P++G A+I G D+
Sbjct: 1453 PCGARQPPKVAVDALSFAVDAGECFGFLGTNGAGKTTTLSMLCGEFPPSEGNAYIVGHDV 1512
Query: 1425 RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1484
S+P R+LIGYCPQFDALL+ LTV+EHLELYA IK V E +++ VV EKL EFDL
Sbjct: 1513 WSNPADTRQLIGYCPQFDALLDLLTVREHLELYANIKAVPEDKLEQVVQEKLTEFDLWGQ 1572
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
A K + +LSGGNKRKLSVAIAM+ DPPIVILDEPSTGMDP+A+RFMW+VI+R+STR+G +
Sbjct: 1573 AHKTASSLSGGNKRKLSVAIAMVADPPIVILDEPSTGMDPVARRFMWDVITRISTRRGLS 1632
Query: 1545 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLED 1604
AVILTTHSM EAQALCTRIGIM G+LRC+GSPQHLK+RFGN LELEVK + +++
Sbjct: 1633 AVILTTHSMAEAQALCTRIGIMAAGRLRCLGSPQHLKSRFGNSLELEVKAVTTTQSEVDK 1692
Query: 1605 LCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNE 1664
L + + + D ++ ++ ++ + +AT +E ++ + LGNE
Sbjct: 1693 LSHFVLQNLPDSDARETEII-----------ALDNSDATLSETEVTAAAFI-----LGNE 1736
Query: 1665 ERIKTLISSSSS 1676
+ + L+S +S
Sbjct: 1737 QWGQALLSGHAS 1748
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1723 | ||||||
| TAIR|locus:2054366 | 1882 | ABCA1 "ATP-binding cassette A1 | 0.963 | 0.882 | 0.697 | 0.0 | |
| ZFIN|ZDB-GENE-050517-1 | 2503 | abca2 "ATP-binding cassette, s | 0.356 | 0.245 | 0.356 | 8.6e-181 | |
| UNIPROTKB|Q9BZC7 | 2435 | ABCA2 "ATP-binding cassette su | 0.363 | 0.257 | 0.348 | 1.8e-175 | |
| UNIPROTKB|J3QSS3 | 2436 | ABCA2 "ATP-binding cassette su | 0.363 | 0.256 | 0.348 | 1.8e-175 | |
| RGD|620238 | 2434 | Abca2 "ATP-binding cassette, s | 0.363 | 0.257 | 0.345 | 5.9e-175 | |
| UNIPROTKB|E1BVQ5 | 1706 | ABCA3 "Uncharacterized protein | 0.327 | 0.331 | 0.374 | 1.2e-173 | |
| UNIPROTKB|F1RFA0 | 1702 | ABCA3 "Uncharacterized protein | 0.327 | 0.331 | 0.349 | 2e-172 | |
| UNIPROTKB|E1BCR1 | 1704 | ABCA3 "Uncharacterized protein | 0.323 | 0.326 | 0.376 | 1.1e-170 | |
| ZFIN|ZDB-GENE-031006-12 | 2268 | abca1a "ATP-binding cassette, | 0.148 | 0.112 | 0.480 | 2.3e-170 | |
| MGI|MGI:1351617 | 1704 | Abca3 "ATP-binding cassette, s | 0.322 | 0.326 | 0.374 | 2.4e-170 |
| TAIR|locus:2054366 ABCA1 "ATP-binding cassette A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6005 (2118.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 1177/1687 (69%), Positives = 1362/1687 (80%)
Query: 14 KNWLLKVHLYGTCSQVKDCLNPKIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIM 73
+ ++ H YG CS+V++C NPKIKGAVVFH+QGP LFDYSIRLNHTWAF+GFP+VK+IM
Sbjct: 125 ETYITSAH-YGVCSEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVKSIM 183
Query: 74 DTNGPYLNDLELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSN 133
DTNGPY+NDLE+G+N IPTMQYSFSGFLTLQQV+DSFIIFA+QQ ++ + SN
Sbjct: 184 DTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQNN------DLPLSHSN 237
Query: 134 LSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLIS 193
LS L + PWTL+SPS IRMVPFPTREYTDDEFQSI+K VMG+LYLLGFL+PISRLIS
Sbjct: 238 LSSA-LRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLIS 296
Query: 194 YSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTVV 253
YSVFEKEQKIREGLYMMGLKD IFHLSWFITYA QFA+ SGIITACTM SLFKYSDKT+V
Sbjct: 297 YSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKTLV 356
Query: 254 FTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVIAS 313
FTYFF FGLSAI LSF ISTFF RAKTAVAVGTL+FLGAFFPYYTVNDE+V MVLKV+AS
Sbjct: 357 FTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKVVAS 416
Query: 314 LLSPTAFALGSVNFADYERAHVGLRWSNMWRASSGVNFXXXXXXXXXXXXXYGVIGLYLD 373
LLSPTAFALGS+NFADYERAHVGLRWSN+WRASSGV+F Y +GLYLD
Sbjct: 417 LLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLD 476
Query: 374 KVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVV 433
KVLP+ENGVRY WNFIF F RKK+ +++ + E + + E + +PV
Sbjct: 477 KVLPRENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDM---FPADIEVNQG-EPFDPVF 532
Query: 434 EAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKS 493
E+ISL+M+QQE+DGRCIQ+R LHKVYA++RGNCCAVNSLQLTLYENQIL+LLGHNGAGKS
Sbjct: 533 ESISLEMRQQELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKS 592
Query: 494 TTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL 553
TTISMLVGL+PPT+GDAL+ G +I +MDEIRK LGVCPQ+DILFPELTVREHLEMFAVL
Sbjct: 593 TTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVL 652
Query: 554 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
KGV+E L+S V +M +EVGL+DK+N +VRALSGGMKRKLSLGIALIG+SKV+ILDEPTS
Sbjct: 653 KGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTS 712
Query: 614 GMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673
GMDPYSMRLTWQ TTHSMDEAEELGDRI IMANGSLKCCGSS+FLKH
Sbjct: 713 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHH 772
Query: 674 YGVGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 733
YGVGYTLTLVK++P S AA IV+RHIPSA CVSEVG EI+FKLPLAS FE+MFREIE
Sbjct: 773 YGVGYTLTLVKTSPTVSVAAHIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIE 832
Query: 734 SCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLD---ESECI----SQ 786
SC++ SV + + ED+DY GI+S+GISVTTLEEVFLRVAGCNLD + E I
Sbjct: 833 SCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDKQEDIFVSPDT 892
Query: 787 RNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFL 846
+++LV + S + PK +++C G G I+T V +A LIVAAV + F+
Sbjct: 893 KSSLVCIG--SNQKSSMQPKLLASCN-DGA-----GVIITSVAKAFRLIVAAVWTLIGFI 944
Query: 847 IKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIXXXXXXXXXXXXPH 906
+CC C IISRSMFW+HCKALFIKRA SA RDRKT+ FQ +IPA+ PH
Sbjct: 945 SIQCCGCSIISRSMFWRHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPH 1004
Query: 907 PDMLSVTFTTSNFNPLLSXXXXXXPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNX 966
PD S+T TT+ FNPLLS PIPFDLS PIA EV++YI+GGWIQ + +SY+FPN
Sbjct: 1005 PDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAKEVAQYIEGGWIQPLRNTSYKFPNP 1064
Query: 967 XXXXXXXXXXXGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNS 1026
GPTLGP LLSMSE+LMSSF++SYQSRYG+I+MD Q+ DGSLG+TVLHN
Sbjct: 1065 KEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSLGYTVLHNG 1124
Query: 1027 SCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDXXXXXXXXXX 1086
+CQHAGP +INVM+ AILRLATGN+NMTI+TRNHPLP T++Q++QRHDLD
Sbjct: 1125 TCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAIIVNI 1184
Query: 1087 XXXXXXXXXXXXXVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYI 1146
VKEREVKAK QQLISGVSVLSYW STY+WDFISFLFPS+ AIILFY
Sbjct: 1185 AFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYA 1244
Query: 1147 FGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMV 1206
FGL+QF+G G LPTVL+ L YGLAIASSTYCLTFFF++H+MAQNV+L+VHFF+GLILMV
Sbjct: 1245 FGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMV 1304
Query: 1207 ISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTSA 1266
ISF+MGL+ AT SANS LKNFFRLSPGFCF+DGLASLALLRQGMKDK+S GVF+WNVT A
Sbjct: 1305 ISFVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGA 1364
Query: 1267 SICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSE 1326
SICYLG ESI YFL+TLGLEL+P K +I EWW+ + SS EPLL+ S+
Sbjct: 1365 SICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKDSTG 1424
Query: 1327 SDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAG 1386
+ + D+ +DIDVQ ER+RV+SG DN ++YL+NLRKVYPG K KVAV SLTFSVQAG
Sbjct: 1425 AISTDMEDDIDVQEERDRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAG 1484
Query: 1387 ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLE 1446
ECFGFLGTNGAGKTTTLSM+SGEE PT GTAFIFGKDI + PKA R+ IGYCPQFDAL E
Sbjct: 1485 ECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFE 1544
Query: 1447 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506
YLTV+EHLELYARIKGV ++R+D+VV EKLVEFDLLKH+ KPSFTLSGGNKRKLSVAIAM
Sbjct: 1545 YLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAM 1604
Query: 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566
IGDPPIVILDEPSTGMDP+AKRFMW+VISRLSTR GKTAVILTTHSMNEAQALCTRIGIM
Sbjct: 1605 IGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIM 1664
Query: 1567 VGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDD 1626
VGG+LRCIGSPQHLKTR+GN LELEVKP EVS+V+LE+ CQIIQ+ +F++P+Q RSLL D
Sbjct: 1665 VGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGD 1724
Query: 1627 LEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLS 1686
LEVCIG DSI+ + A+A+EISLS EM+ + ++LGNE+R+ TL+ D F +QLS
Sbjct: 1725 LEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLS 1784
Query: 1687 EQLVRDG 1693
EQL RDG
Sbjct: 1785 EQLFRDG 1791
|
|
| ZFIN|ZDB-GENE-050517-1 abca2 "ATP-binding cassette, sub-family A (ABC1), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 8.6e-181, Sum P(5) = 8.6e-181
Identities = 230/645 (35%), Positives = 365/645 (56%)
Query: 150 PSN-IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLY 208
P N ++M P+P YT D+F +I+ +M + ++ ++Y ++ +I + V EKEQ+++E +
Sbjct: 735 PGNYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMMIQHIVAEKEQRLKEVMK 792
Query: 209 MMGLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITL 267
MMGL + + ++WFIT Q ++S +TA + +SD +++ + + ++ I
Sbjct: 793 MMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGKVLLHSDPFIIWLFLTIYAVATIMF 852
Query: 268 SFFISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFA 321
F +S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF
Sbjct: 853 CFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFG 912
Query: 322 LGSVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPK 378
LGS FA YE A VG++W + ++ N YGV+ Y++ V P
Sbjct: 913 LGSKYFALYEVAGVGIQWRTINQSPVEGDDFNLLLSMVMLTIDAIVYGVLTWYIEAVHPG 972
Query: 379 ENGVRYRWNFIFQNCFRRKKSVIK--HHVSSAEVKINKKLSKEKECAFALDACEPVVEAI 436
G+ W F Q + I+ +++ + +++ CA E E
Sbjct: 973 MYGLPRPWYFPLQKSYWLGSGRIETWEWPWGGGTRLSV-MEEDQACAMEHRRSE---ETR 1028
Query: 437 SLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTI 496
++ + + + I KL KVY T G+ A+N L L L+ENQ+++ LGHNGAGK+TT+
Sbjct: 1029 GIEEEPNHLP-LVVCIDKLTKVYKT--GSKLALNKLSLNLHENQVVSFLGHNGAGKTTTM 1085
Query: 497 SMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV 556
S+L GL PPT+G A ++G +I +M+ IR+ LG+CPQ+++LF +L+V EHL ++ LKG+
Sbjct: 1086 SILTGLFPPTSGSATIYGHDIRTEMERIRQNLGMCPQHNVLFDKLSVEEHLWFYSRLKGM 1145
Query: 557 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
EE + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ VILDEPT+G+D
Sbjct: 1146 AEEDIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAVILDEPTAGVD 1205
Query: 617 PYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 676
PY+ R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG
Sbjct: 1206 PYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKSTYGD 1265
Query: 677 GYTLTLVKSAPDASAAADIVYRHIPSAL--C----VSEVGTEITFKLPLASSSSFESMFR 730
GY LTLVK D S AD + S++ C V++ + L S S+ E +
Sbjct: 1266 GYKLTLVKKQSD-SHTADQSSQSPSSSISPCSENRVTQFIRQYVASCLLVSDSNTELSYV 1324
Query: 731 EIESCIRKSVSKVEADATEDT-DYLGIESFGISVTTLEEVFLRVA 774
++K + A E + D L + SFG+ TTLEEVFL+V+
Sbjct: 1325 LPSEAVKKGCFERLFQALEQSLDSLALTSFGVMDTTLEEVFLKVS 1369
|
|
| UNIPROTKB|Q9BZC7 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 1.8e-175, Sum P(6) = 1.8e-175
Identities = 228/655 (34%), Positives = 357/655 (54%)
Query: 151 SNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMM 210
S ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E + M
Sbjct: 684 SYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTM 741
Query: 211 GLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITLSF 269
GL + + ++WFIT Q ++S +TA + +S +++ + + ++ I F
Sbjct: 742 GLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCF 801
Query: 270 FISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFALG 323
+S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF LG
Sbjct: 802 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLG 861
Query: 324 SVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKEN 380
S FA YE A VG++W ++ N YG++ Y++ V P
Sbjct: 862 SKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMY 921
Query: 381 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS-KEKECAFALDACEPVVEAISLD 439
G+ W F Q + + S +LS E++ A A+++ E ++
Sbjct: 922 GLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMES-RRFEETRGME 980
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+ + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S+L
Sbjct: 981 EEPTHLP-LVVCVDKLTKVY--KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSIL 1037
Query: 500 VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 559
GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF LTV EHL ++ LK + +E
Sbjct: 1038 TGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQE 1097
Query: 560 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+ + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DPY+
Sbjct: 1098 EIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYA 1157
Query: 620 MRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYT 679
R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG GY
Sbjct: 1158 RRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYR 1217
Query: 680 LTLVK-----SAPDASAAADIVYRHIPSALC----VSEVGTEITFKLPLASSSSFE-SMF 729
LTLVK P A P + C VS+ + L S +S E S
Sbjct: 1218 LTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELSYI 1277
Query: 730 REIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA--GCNLDESE 782
E+ + + ++ D L + SFG+ TTLEEVFL+V+ +L+ SE
Sbjct: 1278 LPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSE 1332
|
|
| UNIPROTKB|J3QSS3 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 1.8e-175, Sum P(6) = 1.8e-175
Identities = 228/655 (34%), Positives = 357/655 (54%)
Query: 151 SNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMM 210
S ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E + M
Sbjct: 685 SYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMKTM 742
Query: 211 GLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITLSF 269
GL + + ++WFIT Q ++S +TA + +S +++ + + ++ I F
Sbjct: 743 GLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVVIIWLFLAVYAVATIMFCF 802
Query: 270 FISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFALG 323
+S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF LG
Sbjct: 803 LVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFGLG 862
Query: 324 SVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKEN 380
S FA YE A VG++W ++ N YG++ Y++ V P
Sbjct: 863 SKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYIEAVHPGMY 922
Query: 381 GVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS-KEKECAFALDACEPVVEAISLD 439
G+ W F Q + + S +LS E++ A A+++ E ++
Sbjct: 923 GLPRPWYFPLQKSYWLGSGRTEAWEWSWPWARTPRLSVMEEDQACAMES-RRFEETRGME 981
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+ + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S+L
Sbjct: 982 EEPTHLP-LVVCVDKLTKVY--KDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSIL 1038
Query: 500 VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 559
GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF LTV EHL ++ LK + +E
Sbjct: 1039 TGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDRLTVEEHLWFYSRLKSMAQE 1098
Query: 560 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+ + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DPY+
Sbjct: 1099 EIRREMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDPYA 1158
Query: 620 MRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYT 679
R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG GY
Sbjct: 1159 RRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYR 1218
Query: 680 LTLVK-----SAPDASAAADIVYRHIPSALC----VSEVGTEITFKLPLASSSSFE-SMF 729
LTLVK P A P + C VS+ + L S +S E S
Sbjct: 1219 LTLVKRPAEPGGPQEPGLASSPPGRAPLSSCSELQVSQFIRKHVASCLLVSDTSTELSYI 1278
Query: 730 REIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA--GCNLDESE 782
E+ + + ++ D L + SFG+ TTLEEVFL+V+ +L+ SE
Sbjct: 1279 LPSEAAKKGAFERLFQHLERSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSE 1333
|
|
| RGD|620238 Abca2 "ATP-binding cassette, subfamily A (ABC1), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 5.9e-175, Sum P(7) = 5.9e-175
Identities = 227/657 (34%), Positives = 362/657 (55%)
Query: 150 PSN-IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLY 208
P N ++M P+P YT D+F +I+ +M + ++ ++Y ++ I + V EKE +++E +
Sbjct: 682 PGNYVQMFPYPC--YTRDDFLFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKEVMK 739
Query: 209 MMGLKDGIFHLSWFITYAAQFAVSSGIITACTM-DSLFKYSDKTVVFTYFFSFGLSAITL 267
MGL + + ++WFIT Q ++S +TA + +S +++ + + ++ I
Sbjct: 740 TMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGQVLMHSHVLIIWLFLAVYAVATIMF 799
Query: 268 SFFISTFFARAKTAVAVGTLSFLGAFFPY-YT-VNDEA----VPMVLKVIASLLSPTAFA 321
F +S +++AK A A G + + ++ PY Y + +E + K IASL+S TAF
Sbjct: 800 CFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIREEVAHDKITAFEKCIASLMSTTAFG 859
Query: 322 LGSVNFADYERAHVGLRWSNMWRA---SSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPK 378
LGS FA YE A VG++W ++ N YGV+ Y++ V P
Sbjct: 860 LGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPG 919
Query: 379 ENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLS-KEKECAFALDACEPVVEAIS 437
G+ W F Q + + S +LS E++ A A+++ E
Sbjct: 920 MYGLPRPWYFPLQKSYWLGSGRTETWEWSWPWAHAPRLSVMEEDQACAMES-RHFEETRG 978
Query: 438 LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTIS 497
++ + + + + KL KVY K A+N L L LYENQ+++ LGHNGAGK+TT+S
Sbjct: 979 MEEEPTHLP-LVVCVDKLTKVY--KNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMS 1035
Query: 498 MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 557
+L GL PPT+G A ++G +I +MDEIRK LG+CPQ+++LF +LTV EHL ++ LK +
Sbjct: 1036 ILTGLFPPTSGSATIYGHDIRTEMDEIRKNLGMCPQHNVLFDQLTVEEHLWFYSRLKSMA 1095
Query: 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+E + + +M++++ L++K + +V+ LSGGMKRKLS+ IA +G S+ +ILDEPT+G+DP
Sbjct: 1096 QEEIRKEMDKMIEDLELSNKRHSLVQTLSGGMKRKLSVAIAFVGGSRAIILDEPTAGVDP 1155
Query: 618 YSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 677
Y+ R W +TH MDEA+ LGDRIAI+++G LKCCGS LFLK YG G
Sbjct: 1156 YARRAIWDLILKYKPGRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDG 1215
Query: 678 YTLTLVKSAPDASAAADIVYRHIPSAL-----C----VSE-VGTEITFKLPLASSSSFES 727
Y LTLVK + + + PS C VS+ + + L ++ +S+ S
Sbjct: 1216 YRLTLVKRPAEPGTSQEPGMASSPSGRPQLSNCSEMQVSQFIRKHVASSLLVSDTSTELS 1275
Query: 728 MFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA--GCNLDESE 782
E+ + + ++ D L + SFG+ TTLEEVFL+V+ +L+ SE
Sbjct: 1276 YILPSEAVKKGAFERLFQQLEHSLDALHLSSFGLMDTTLEEVFLKVSEEDQSLENSE 1332
|
|
| UNIPROTKB|E1BVQ5 ABCA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.2e-173, Sum P(3) = 1.2e-173
Identities = 223/596 (37%), Positives = 325/596 (54%)
Query: 152 NIRMVP--FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYM 209
NI +V FP Y +D F I+ + +L +L F Y ++ V EKE+K++E ++M
Sbjct: 235 NITVVVQRFPYPSYVNDLFVLAIQNQLPLLLMLSFTYTSLNIVRAVVHEKEKKLKEYMHM 294
Query: 210 MGLKDGIFHLSWFITYAAQFAVSSGIITA--CTMDS----LFKYSDKTVVFTYFFSFGLS 263
MGL + + +WF+ + VS +T C S + SD T+VFT+ F +S
Sbjct: 295 MGLSNWLHWSAWFLMFFLFLLVSVFFVTLLFCVKVSEQGAVLTSSDPTLVFTFLAIFSIS 354
Query: 264 AITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTVND--EAVPMVLKVIASLLSPTAFA 321
I+ +F +STFF+RA A A G + ++ PY+ ++ + + K+ + L+S A A
Sbjct: 355 TISFNFMVSTFFSRANVAAAAGGFLYFFSYIPYFFISPRYDLMSHSQKLASCLISNVAMA 414
Query: 322 LGSVNFADYERAHVGLRWSNMWR-ASSGVNFXXXXXXXXXXXXX--YGVIGLYLDKVLPK 378
+G+ +E G++W ++ + S NF YG++ Y++ V P
Sbjct: 415 MGAQLIGMFEGKGTGIQWRDLMKPVSVDDNFTLAQVLGMLLLDSVLYGLVAWYVEAVFPG 474
Query: 379 ENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISL 438
E GV W F + I K+ +E++ AL + +E
Sbjct: 475 EYGVPQPWYFFLTPSY---------WCGQPRTVIGKEKEEEEDPEKALKS--QYIEEEPA 523
Query: 439 DMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISM 498
D+ V G I+I+ L KV+ AV L + +YE QI LLGHNGAGK+TT+SM
Sbjct: 524 DL----VSG--IKIKHLSKVFKVGSKTKEAVKDLTVNMYEGQITVLLGHNGAGKTTTLSM 577
Query: 499 LVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 558
L GL PT+G A + G I+ DM IR+ LG+CPQ+D+LF +TV EHL +A LKG
Sbjct: 578 LTGLYSPTSGQAYINGYEISQDMVLIRRSLGLCPQHDVLFDNMTVEEHLHFYAGLKGYPA 637
Query: 559 ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
+ ++ + L DK + + +ALSGGMKRKLS+GIALIGDSKVV+LDEPTSGMDP
Sbjct: 638 SKCPEEINHILRILNLEDKRHSLTKALSGGMKRKLSIGIALIGDSKVVMLDEPTSGMDPA 697
Query: 619 SMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGY 678
S R TW TTH MDEA+ LGDRIAIMA G L+CCGSSLFLK +YG GY
Sbjct: 698 SRRATWDLLQQQRSNRTILLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKRKYGAGY 757
Query: 679 TLTLVKSAP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 733
+ +VK + + ++ +++P+A S G E++F LP S+ FE++F E+E
Sbjct: 758 HMVMVKEPYCNLGEISRLICQYVPNATMESNAGAELSFILPKESTHRFEALFTELE 813
|
|
| UNIPROTKB|F1RFA0 ABCA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 2.0e-172, Sum P(5) = 2.0e-172
Identities = 205/587 (34%), Positives = 304/587 (51%)
Query: 1021 TVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQ---RHDLDX 1077
T L N+ H+ T + +++ + +L G R +I N+P P + Q +
Sbjct: 1034 TALFNNQAYHSPATALAIVDNLLFQLLCGPR-ASITASNYPQPRSALQAAKDQFNEGRKG 1092
Query: 1078 XXXXXXXXXXXXXXXXXXXXXXVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPS 1137
V ER V+AK Q +SGV V ++W S +WD +SFL P+
Sbjct: 1093 FNIALNLLFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVATFWLSALLWDLLSFLIPA 1152
Query: 1138 SCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVH 1197
+++F F + F G L +L+ + YG AI Y L+FFFS A + + +
Sbjct: 1153 LLLLVVFKAFDVHAFTRDGHLADALLLLMLYGWAIIPLMYLLSFFFSAAATAYARLTVFN 1212
Query: 1198 FFTGLILMVISFIMGLLEAT-RSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSD 1256
+G+ ++ + + + L F + P C ++S + + TS
Sbjct: 1213 ILSGVATFLVVTVTRIPAVKLEELSRTLDRVFLVLPNHCLGMAVSSFYENYETRRYCTSS 1272
Query: 1257 GVF-----DWNVTSASICYL-GCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLC 1310
V NV Y I F+ +L TL+ + E R + C
Sbjct: 1273 TVAAHYCQKHNVRYQENFYAWSAPGIGRFVASLAASGFAY--LTLLFLLETDLLWRLKFC 1330
Query: 1311 NTPSSYLEPLL-QSSSESDTLDLNEDIDVQVERNRVLSGSVDN---AIIYLRNLRKVYPG 1366
L Q+ + + T L ED DV ERNRVL+ +D+ + ++ L KVY
Sbjct: 1331 LCALRRRRALNNQTEAYTQTPALPEDQDVADERNRVLAPGLDSLPDTPLVIKELSKVYE- 1389
Query: 1367 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS 1426
+R+ +AV ++ VQ GECFG LG NGAGKTTT M++GEE + G AF+ G IRS
Sbjct: 1390 -QRAPL-LAVDRVSLKVQKGECFGLLGFNGAGKTTTFKMLTGEETVSSGDAFVGGYSIRS 1447
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
D + R+ IGYCPQFDALL++LT +E L +YAR++G+ E ++ V L L +A
Sbjct: 1448 DLRKVRQQIGYCPQFDALLDHLTGRETLVMYARLRGIPERHIESCVENTLRGLLLEPYAN 1507
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
K T SGGNKRKLS IA++G+P ++ LDEPSTGMDP+A+R +W+ ++R + GK A+
Sbjct: 1508 KRVGTYSGGNKRKLSAGIALLGEPTVIFLDEPSTGMDPVARRLLWDTVAR-ARESGK-AI 1565
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1593
I+T+HSM E +ALCTR+ IMV GQ +C+GSPQHLK++FG+ L K
Sbjct: 1566 IITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAK 1612
|
|
| UNIPROTKB|E1BCR1 ABCA3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 1.1e-170, Sum P(3) = 1.1e-170
Identities = 222/589 (37%), Positives = 320/589 (54%)
Query: 158 FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIF 217
FP + D F I+ + +L +L F Y +I V EKE+K++E + MMGL +
Sbjct: 245 FPYPPFISDPFLVAIQYQLPLLLMLSFTYTSLSIIRAIVQEKEKKLKEYMRMMGLSSWLL 304
Query: 218 HLSWFITYAAQFAVSSGIITA--CTM---D-SLFKYSDKTVVFTYFFSFGLSAITLSFFI 271
+WF+ + V+ +T C D ++ +SD T+V + F +S+I+ SF +
Sbjct: 305 WTAWFLLFFLLLLVAVSFMTLLFCVKVKKDVAVLAHSDPTLVLVFLACFAVSSISFSFMV 364
Query: 272 STFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFAD 329
STFF++A A A+G + ++ PY+ V M L K+ + LLS A A+G+
Sbjct: 365 STFFSKANMAAAIGGFLYFFSYIPYFFVAPRYNWMTLSQKLFSCLLSNVAMAMGAQLIGK 424
Query: 330 YERAHVGLRWSNMW---RASSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKENGVRYRW 386
+E G++W ++ F YG++ Y++ VLP + GV W
Sbjct: 425 FEAKGTGIQWRDLLSPVNVDDDFTFGQVLGMLLLDSVLYGLVAWYVEAVLPGQFGVPQPW 484
Query: 387 NFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE-V 445
F ++ + + L KE+E D E V+ + + ++ V
Sbjct: 485 YFF----------ILPSYWCG---RPRTALGKEEED----DDPEKVLRTEYFEAEPEDLV 527
Query: 446 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 505
G I+I+ + KV+ AV L L LYE QI LLGHNGAGK+TT+SML GL PP
Sbjct: 528 AG--IKIKHVSKVFRVGNKGKAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPP 585
Query: 506 TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
T+G A + G ++ DMD+IRK LG+CPQ+D+LF +LTV EHL +A LKG+ + V
Sbjct: 586 TSGRAYISGYEVSQDMDQIRKSLGLCPQHDVLFDDLTVAEHLYFYAQLKGLPRQKCPEEV 645
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
M+ +GL +K + R LSGGM+RKLS+GIALI SKV++LDEPTSG+D S R W
Sbjct: 646 KRMLHVLGLEEKRDSRSRFLSGGMRRKLSIGIALIAGSKVLMLDEPTSGVDAISRRAIWD 705
Query: 626 XXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKS 685
TTH MDEA+ LGDRIAIMA G L+CCGSSLFLK +YG GY +TLVK
Sbjct: 706 LLQQHKSDRTILLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKEKYGAGYHMTLVKE 765
Query: 686 AP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 733
+ + +V H+P+A S G E++F LP S+ FES+F ++E
Sbjct: 766 PHCNPEGISRLVQHHVPNATLESSAGAELSFILPKESTHRFESLFAKLE 814
|
|
| ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.3e-170, Sum P(7) = 2.3e-170
Identities = 125/260 (48%), Positives = 172/260 (66%)
Query: 434 EAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKS 493
EA+ ++ + +D + I L K+Y+ + AV+ L L YE QI + LGHNGAGK+
Sbjct: 889 EAVCIEEEPAHIDPG-VYIENLMKIYSNGK---VAVDGLTLGFYEGQITSFLGHNGAGKT 944
Query: 494 TTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL 553
TT+S+L GL PPT+G A + GK+I D++ IR+ LGVCPQ+++LF LTV EH+ +A L
Sbjct: 945 TTMSILTGLFPPTSGTAYIQGKDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARL 1004
Query: 554 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
KG+ E ++S + ++V ++GL K LSGGM+RKLS+ +A +G SKVVILDEPT+
Sbjct: 1005 KGLSAEKVKSEMEQIVMDLGLPHKRTSRSNQLSGGMQRKLSVALAFVGGSKVVILDEPTA 1064
Query: 614 GMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673
G+DPY+ R W +TH MDEA+ LGDRIAI+++G L C GSSLFLK Q
Sbjct: 1065 GVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQ 1124
Query: 674 YGVGYTLTLVKSAPDASAAA 693
G GY LTLVK D SA++
Sbjct: 1125 LGTGYYLTLVKKDFDLSASS 1144
|
|
| MGI|MGI:1351617 Abca3 "ATP-binding cassette, sub-family A (ABC1), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 2.4e-170, Sum P(3) = 2.4e-170
Identities = 221/590 (37%), Positives = 320/590 (54%)
Query: 158 FPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIF 217
FP Y D F I+ + +L +L F Y +I V EKE+K++E + MMGL +
Sbjct: 245 FPFPPYISDPFLIAIQYQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLH 304
Query: 218 HLSWFITYAAQFAVSSGIITA--CTM---D-SLFKYSDKTVVFTYFFSFGLSAITLSFFI 271
+WF+ + F + +T C D ++ SD ++V + F +S+I+ SF +
Sbjct: 305 WSAWFLMFFLFFLIVVSFMTLLFCVKVKKDIAVLSNSDPSLVLAFLLCFAISSISFSFMV 364
Query: 272 STFFARAKTAVAVGTLSFLGAFFPYYTVNDEAVPMVL--KVIASLLSPTAFALGSVNFAD 329
STFF++A A AVG + + PY+ V M L K+++ LLS A A+G+
Sbjct: 365 STFFSKANIAAAVGGFLYFFTYTPYFFVAPRYNWMTLSQKLLSCLLSNVAMAMGAQLIGK 424
Query: 330 YERAHVGLRWSNMWR---ASSGVNFXXXXXXXXXXXXXYGVIGLYLDKVLPKENGVRYRW 386
+E G++W ++ F YG++ Y++ V P + GV W
Sbjct: 425 FEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGLVTWYVEAVFPGQFGVPQPW 484
Query: 387 NFIFQNCF--RRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQE 444
+F + ++V+ ++ + K L E +A EP D+
Sbjct: 485 HFFLMPSYWCGNPRTVVGKEEEGSDPE--KALRNEY-----FEA-EPE------DL---- 526
Query: 445 VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
V G I+I+ L KV+ + + L L LYE QI LLGHNGAGK+TT+S+L GL P
Sbjct: 527 VAG--IKIKHLSKVFQVGNKDKMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSLLTGLFP 584
Query: 505 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
PT+G A + G I+ DM +IRK LG+CPQ+D+LF LTV EHL +A LKG+ +
Sbjct: 585 PTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFYAQLKGLSLQKCPEE 644
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
V +M+ + L DK ++ + LSGGMKRKLS+GIALI SKV++LDEPTSGMD S R W
Sbjct: 645 VKQMLHILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGMDAVSRRAIW 704
Query: 625 QXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVK 684
TTH MDEA+ LGDRIAI+A G L+CCGSSLFLK +YG GY +TLVK
Sbjct: 705 DLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHMTLVK 764
Query: 685 SAP-DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIE 733
+ + +V+ H+P+A+ S G E++F LP S+ FES+F ++E
Sbjct: 765 EPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLE 814
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84M24 | AB1A_ARATH | No assigned EC number | 0.7347 | 0.9547 | 0.8740 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | PtrAOH1 | ABC transporter family, cholesterol/phospholipid flippase (1892 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1723 | |||
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-115 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-104 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-101 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-96 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-80 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-78 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-64 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-63 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-63 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-60 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-60 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-58 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-53 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-51 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-50 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-50 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-48 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-47 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-46 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-46 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-46 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-46 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-46 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-45 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-45 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-44 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-44 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-44 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-44 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-43 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-42 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-42 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-42 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-41 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-41 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-41 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-40 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-40 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-39 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-39 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-39 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-39 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-38 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-37 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-37 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-37 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-37 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-37 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-37 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-36 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-36 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-36 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-35 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-35 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-35 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-34 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-34 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-34 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-34 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-34 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-33 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-33 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-33 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-33 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-33 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-33 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-33 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-33 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-32 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-32 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-32 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-32 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-32 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-32 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-32 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-32 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-31 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-31 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-31 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-31 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-31 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-31 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-31 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-31 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-31 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-30 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-30 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-30 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-30 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-30 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-30 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-30 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-30 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-29 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-29 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-29 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-29 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-29 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-28 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-28 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-28 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-28 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-28 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-28 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-28 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-27 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-27 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-27 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-27 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-27 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-27 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-27 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-27 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-26 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-26 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-26 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-26 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-26 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-26 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-26 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-26 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-26 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-26 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-25 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-25 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-25 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-25 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-25 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-25 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-25 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-24 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-24 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-24 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-24 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-24 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-24 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-24 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-24 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-24 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-24 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-23 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-23 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-23 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-23 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-23 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-23 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-23 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-23 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-23 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-23 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-23 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-23 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-22 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-22 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-22 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-22 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-22 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-22 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-22 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-22 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-22 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-22 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-22 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-22 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-22 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-22 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-21 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-21 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-21 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-21 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-21 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-21 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-21 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-21 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-21 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-21 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-21 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-20 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-20 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-20 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 4e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-20 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-19 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-19 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-19 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-19 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-19 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-19 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-19 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-19 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-19 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-19 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-19 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-19 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-19 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-19 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-19 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-19 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-19 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-19 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-18 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-18 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-18 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-18 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-18 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-18 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-18 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-18 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-18 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-18 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-18 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-17 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-17 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-17 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-17 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-17 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-17 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-17 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-17 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-17 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-17 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-16 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-16 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-16 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-16 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-16 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-16 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-16 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-16 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-16 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-16 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-16 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-16 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-15 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-15 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-15 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-15 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-15 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-15 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-15 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-15 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-15 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-15 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-15 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 9e-15 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-14 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-14 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-14 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-14 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-14 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-14 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-14 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-14 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-14 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 7e-14 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-14 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-13 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-13 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-13 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-13 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-13 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-13 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-13 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-13 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-13 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-13 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-13 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-13 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-13 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-12 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-12 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-12 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-12 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-12 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-12 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-12 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 9e-12 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-11 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-11 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-11 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-11 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-11 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-10 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-10 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-10 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-10 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-10 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 8e-10 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-09 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-08 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-08 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-08 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-08 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 7e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 9e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-06 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-06 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 5e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-06 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 6e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 8e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-06 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 9e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-05 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.003 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.003 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.004 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.004 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-115
Identities = 241/681 (35%), Positives = 366/681 (53%), Gaps = 98/681 (14%)
Query: 153 IRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGL 212
++ +P+P + DD F I+ R + +L ++Y +S + V EKE +++E L G+
Sbjct: 634 LQQMPYPC--FVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGV 691
Query: 213 KDGIFHLSWFITYAAQFAVSSGIITACTMDS-LFKYSDKTVVFTYFFSFGLSAITLSFFI 271
+ + +WF+ + ++S ++T M + YSD ++F + +F + I F +
Sbjct: 692 SNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLL 751
Query: 272 STFFARAKTAVAVGTLSFLGAFFPY---YTVNDEAVPMVLKVIASLLSPTAFALGSVNFA 328
STFF++A A A + + + P+ + D + LK SLLSP AF G+
Sbjct: 752 STFFSKASLAAACSGVIYFTLYLPHILCFAWQDR-MTADLKTAVSLLSPVAFGFGTEYLV 810
Query: 329 DYERAHVGLRWSNMWRA---SSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYR 385
+E +GL+WSN+ + +FL+ + MMLLD LYG++ YLD+V P + G
Sbjct: 811 RFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLP 870
Query: 386 WNFIFQN--------CFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAIS 437
W F+ Q C R++ ++ + L++E E D P E I+
Sbjct: 871 WYFLLQESYWLGGEGCSTREERALEK---------TEPLTEEME-----DPEHP--EGIN 914
Query: 438 LDMKQQE----VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKS 493
++E V G C+ + L K++ + AV+ L +T YENQI A LGHNGAGK+
Sbjct: 915 DSFFERELPGLVPGVCV--KNLVKIF--EPSGRPAVDRLNITFYENQITAFLGHNGAGKT 970
Query: 494 TTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL 553
TT+S+L GL+PPT+G LV GK+I ++D +R+ LG+CPQ++ILF LTV EH+ +A L
Sbjct: 971 TTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030
Query: 554 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
KG E + + M+++ GL K N + LSGGM+RKLS+ IA +GD+KVV+LDEPTS
Sbjct: 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673
G+DPYS R W L+ K + GR I+++TH MDEA+ LGDRIAI++ G L C G+ LFLK+
Sbjct: 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150
Query: 674 YGVGYTLTLVKSAP---------------------------------------DASAAAD 694
+G G+ LTLV+ D + D
Sbjct: 1151 FGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMD 1210
Query: 695 IVYRHIPSALCVSEVGTEITFKLPLAS--SSSFESMFREIESCIRKSVSKVEADATEDTD 752
+VY H+P A V +G E+ F LP + ++ S+FRE+E + AD
Sbjct: 1211 LVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETL--------AD------ 1256
Query: 753 YLGIESFGISVTTLEEVFLRV 773
LG+ SFGIS T LEE+FL+V
Sbjct: 1257 -LGLSSFGISDTPLEEIFLKV 1276
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 332 bits (855), Expect = e-104
Identities = 123/227 (54%), Positives = 162/227 (71%), Gaps = 7/227 (3%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +RNL K Y G K AV L+ +V GE FG LG NGAGKTTTL M++GE PT
Sbjct: 1 LQIRNLTKTYKKGT----KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
GTA+I G IR+D KAAR+ +GYCPQFDAL + LTV+EHL YAR+KG+ + + + V
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L L A K + TLSGG KRKLS+AIA+IG P +++LDEP++G+DP ++R +W++I
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI 176
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581
+ R+G++ +ILTTHSM+EA+ALC RI IM G+LRCIGSPQ LK
Sbjct: 177 LEV--RKGRS-IILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-101
Identities = 122/222 (54%), Positives = 154/222 (69%), Gaps = 2/222 (0%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+QIR L K Y K+G AV+ L L +Y+ +I LLGHNGAGK+TT+ ML G + PT+G
Sbjct: 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
A + G +I D R+ LG CPQ+D LF ELTVREHL +A LKG+ + ++ V ++
Sbjct: 59 AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+GL DK N R LSGGMKRKLSL IALIG V++LDEPTSG+DP S R W LI +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 630 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671
++KGR I+LTTHSMDEAE L DRIAIM++G L+C GS LK
Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 347 bits (890), Expect = 2e-96
Identities = 213/583 (36%), Positives = 315/583 (54%), Gaps = 54/583 (9%)
Query: 1022 VLHNSSCQHAGPTFINVMNTAILRLAT-GNRN---MTIRTRNHPLPTTQSQQLQRHDLDA 1077
V N+ HA +F+NV + AILR + +R+ I + PL T+ +QL +
Sbjct: 1617 VWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTK-EQLSEITVLT 1675
Query: 1078 FSVSIIISI----AFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISF 1133
SV +++I A SF+PASF + +++ER KAK Q ISGVS +YW + ++WD +++
Sbjct: 1676 TSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNY 1735
Query: 1134 LFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVV 1193
+ + +F F + L V + + YG A+ Y +F F + A +
Sbjct: 1736 AVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVAL 1795
Query: 1194 LLVHFFTGLILMVISFIMGLLEATRSA---NSLLKNFFRLSPGFCFADGLASLALLRQGM 1250
+ F G+ I+F++ L E R+ N++L+ + P FC GL LAL Q +
Sbjct: 1796 SCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLAL-SQAV 1854
Query: 1251 KD-------KTSDGVFDWNVTSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWK 1303
D + S F W++ ++ + E + YFLLTL L+ H + I E
Sbjct: 1855 TDVYAQFGEEHSANPFQWDLIGKNLVAMAVEGVVYFLLTL---LIQHHFFLSRWIAE--- 1908
Query: 1304 GTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKV 1363
P+ EP+ +ED DV ER R++SG I+ L L KV
Sbjct: 1909 ---------PAK--EPIF-----------DEDDDVAEERQRIISGGNKTDILRLNELTKV 1946
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
Y G + AV L V+ GECFG LG NGAGKTTT M++G+ T G A + GK
Sbjct: 1947 YSG----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKS 2002
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
I ++ + +GYCPQFDA+ + LT +EHL LYAR++GV ++ V + L
Sbjct: 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL 2062
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+A + + T SGGNKRKLS AIA+IG PP+V+LDEP+TGMDP A+R +W I + R+G+
Sbjct: 2063 YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI-IREGR 2121
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
AV+LT+HSM E +ALCTR+ IMV G +C+G+ QHLK++FG+
Sbjct: 2122 -AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 9e-80
Identities = 99/250 (39%), Positives = 157/250 (62%), Gaps = 5/250 (2%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
I++R L K Y + A++ + + +I LLG NGAGK+T + +L GL+ PT+G
Sbjct: 4 VIEVRNLTKKYGGDK---TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 509 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ LV G ++ + ++R+ +G PQ L+PELTVRE+LE FA L G+ +E E + E+
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 628
++ GL DK N VR LSGGMK++LS+ +AL+ D +++ILDEPTSG+DP S R W+L++
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 629 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSA 686
++ K G ILL+TH ++EAEEL DR+ I+ +G + G+ LK ++G + L
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPER 240
Query: 687 PDASAAADIV 696
+ + + +
Sbjct: 241 LELAELLEGL 250
|
Length = 293 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 1e-78
Identities = 104/296 (35%), Positives = 174/296 (58%), Gaps = 11/296 (3%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
+I +RNL K Y G K A+ ++F V+ GE FG LG NGAGKTT L +++G
Sbjct: 2 IEVIEVRNLTKKYGGDKT-----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56
Query: 1412 PTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
PT G + G D+ +P RR IGY PQ +L LTV+E+LE +AR+ G+++ ++
Sbjct: 57 PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER 116
Query: 1472 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
+ E L F L A K TLSGG K++LS+A+A++ DP ++ILDEP++G+DP ++R +W
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELE 1591
E++ L+ ++G ++L+TH + EA+ LC R+ I+ G++ G+P+ LK +FG +E
Sbjct: 177 ELLRELA-KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
Query: 1592 VKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEI 1647
++P + +L + ++ + +L+ L I+SI + + ++
Sbjct: 236 LEPERLELAELLE-----GLKLVKGEEELAEILEALLEEGVKIESIEVKEPSLEDV 286
|
Length = 293 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-64
Identities = 80/213 (37%), Positives = 127/213 (59%), Gaps = 41/213 (19%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++R L K Y K A++ + LT+ + +I LLG NGAGK+T I +++GL+ P +G+
Sbjct: 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
V GK+I + +E+++ +G P+ L+ LTVRE+L+
Sbjct: 57 IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------- 95
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
LSGGMK++L+L AL+ D +++ILDEPTSG+DP S R W+L+++
Sbjct: 96 ---------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 630 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+KK G+ ILL++H ++EAE L DR+AI+ NG +
Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 3e-63
Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 44/215 (20%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+RNL K Y K A+ ++ +V+ GE +G LG NGAGKTT + +I G P G
Sbjct: 3 VRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
Query: 1417 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1476
+ GKDI+ +P+ +R IGY P+ +L E LTV+E+L+L
Sbjct: 57 IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 1477 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1536
SGG K++L++A A++ DP ++ILDEP++G+DP ++R WE++
Sbjct: 97 ----------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
L ++GKT ++L++H + EA+ LC R+ I+ G++
Sbjct: 141 LK-KEGKT-ILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 6e-63
Identities = 102/325 (31%), Positives = 165/325 (50%), Gaps = 29/325 (8%)
Query: 457 KVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN 516
KVY G+ AV+ + + E ++ LG NGAGK+TTI ML L+ PT+G A V G +
Sbjct: 1 KVY----GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD 56
Query: 517 ITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD 576
+ + ++R+ +G+ PQY + +LT RE+LEM L G+ ++ E E+++ L +
Sbjct: 57 VVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE 116
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRI 635
+ V SGGM+R+L + +LI V+ LDEPT+G+DP + R W I+ +K+ G
Sbjct: 117 AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP-----DAS 690
ILLTTH M+EA++L DRIAI+ +G + G+ LK + G TL + S
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG-KDTLESRPRDIQSLKVEVS 235
Query: 691 AAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATED 750
+ L V+ I +P + EI ++ ++ + +TE
Sbjct: 236 MLIAELGETGLGLLAVTVDSDRIKILVPDG-----DETVPEIVEAAIRNGIRIRSISTER 290
Query: 751 TDYLGIESFGISVTTLEEVFLRVAG 775
+L++VFL++ G
Sbjct: 291 -------------PSLDDVFLKLTG 302
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-60
Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 6/224 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ L K Y AV + + +I LLG NGAGK+TTI ML L+ PT+G
Sbjct: 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
A V G ++ + E+R+ +G+ Q + ELT E+L + A L GV + E++
Sbjct: 57 ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELL 116
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
D VGL + + +V+ SGGM+R+L + +L+ +V+ LDEPT G+DP + W+ I+K
Sbjct: 117 DFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
Query: 630 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671
+K+ G ILLTTH M+EAE+L DR+AI+ +G + G+ LK
Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 8e-60
Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + NL K Y AV ++F V+ GE FG LG NGAGKTTT+ M++ PT
Sbjct: 1 IEVENLVKKY------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G A + G D+ +P+ RR IG Q ++ + LT E+L ++AR+ GV + + E
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L LL+ A + T SGG +R+L +A +++ P ++ LDEP+ G+DP + +WE I
Sbjct: 115 LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581
+L G T ++LTTH M EA+ LC R+ I+ G++ G+P+ LK
Sbjct: 175 EKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 2e-58
Identities = 91/225 (40%), Positives = 136/225 (60%), Gaps = 3/225 (1%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
K AV + F V+ GE FGFLG NGAGKTTT+ M++ PT GTA + G D+ +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
P+ RR IG PQ+ ++ E LT +E+LE+ R+ G+ + ++ E L F+L + A +
Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
P T SGG +R+L +A ++I P ++ LDEP+TG+DP +R +W+ I L ++ ++
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL--KEEGVTIL 178
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG-NFLELE 1591
LTTH M EA LC RI I+ G++ G+P+ LK R G + LE
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESR 223
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 7e-53
Identities = 74/217 (34%), Positives = 133/217 (61%), Gaps = 7/217 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+Q+ L K Y G A++ + LTL + LLG NGAGK+T + +L L PP++G
Sbjct: 1 LQLENLTKRY----GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G+++ ++R+ +G PQ ++P TVRE L+ A LKG+ + +++ V E++
Sbjct: 56 IRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS-MRLTWQLIK 628
+ V L D+ + +LSGGM+R++ + AL+GD ++I+DEPT+G+DP +R L+
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR-NLLS 174
Query: 629 KIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
++ + RI++L+TH +++ E L +++A++ G L G
Sbjct: 175 ELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-51
Identities = 96/229 (41%), Positives = 138/229 (60%), Gaps = 10/229 (4%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A I RN+ K Y K+ V L+F VQ GECFG LG NGAGKTTTL M+ G +P
Sbjct: 6 APIDFRNVEKRY------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP 59
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G+ + G+ + S + AR+ +G PQFD L TV+E+L ++ R G++ +V
Sbjct: 60 DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV 119
Query: 1473 MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
L+EF L++ A LSGG KR+L++A A++ DP +++LDEP+TG+DP A+ MW
Sbjct: 120 -PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW 178
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
E + L R GKT ++LTTH M EA+ LC R+ ++ G+ G+P L
Sbjct: 179 ERLRSLLAR-GKT-ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
Length = 306 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 3e-50
Identities = 119/332 (35%), Positives = 184/332 (55%), Gaps = 27/332 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ +L KVY+ AV+ L + + + LLG NGAGK+TT ML G T+GD
Sbjct: 1938 LRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
A V GK+I ++ ++ + +G CPQ+D + LT REHL ++A L+GV E +E V +
Sbjct: 1996 ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSI 2055
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+GL+ + + SGG KRKLS IALIG +V+LDEPT+GMDP + R+ W I
Sbjct: 2056 QSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVS 2115
Query: 630 -IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL-VKSA- 686
I++GR ++LT+HSM+E E L R+AIM G+ +C G+ LK ++G GY +T+ +KS
Sbjct: 2116 IIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPK 2175
Query: 687 ----PDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSK 742
PD + + P ++ + F++ SSS +F+ + S
Sbjct: 2176 DDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVS---SSSLARIFQLLIS-------- 2224
Query: 743 VEADATEDTDYLGIESFGISVTTLEEVFLRVA 774
D L IE + ++ TTL++VF+ A
Sbjct: 2225 -------HKDSLLIEEYSVTQTTLDQVFVNFA 2249
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 9e-50
Identities = 95/236 (40%), Positives = 134/236 (56%), Gaps = 10/236 (4%)
Query: 1346 LSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM 1405
+ GS+ I L + K Y K V+ L+F+V +GECFG LG NGAGK+T M
Sbjct: 33 IPGSMSTVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARM 86
Query: 1406 ISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE 1465
I G P G + G + + + AR IG PQFD L TV+E+L ++ R G++
Sbjct: 87 ILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMST 146
Query: 1466 YRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
R + V+ L+EF L A LSGG KR+L++A A+I DP ++ILDEP+TG+DP
Sbjct: 147 -REIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
A+ +WE + L R GKT ++LTTH M EA+ LC R+ ++ G+ G P L
Sbjct: 206 HARHLIWERLRSLLAR-GKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
Length = 340 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 4e-48
Identities = 70/213 (32%), Positives = 124/213 (58%), Gaps = 10/213 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ L K Y KR ++ + L + + +I LG NGAGK+TT+ +++GLI P +G+
Sbjct: 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
GK+ E + +G + +P LT RE+L + A L G++++ ++ V +
Sbjct: 57 ITFDGKSYQ-KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----L 111
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
D VGL D V+ S GMK++L + +AL+G+ ++ILDEPT+G+DP ++ +LI
Sbjct: 112 DVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILS 171
Query: 630 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 661
++ G +L+++H + E +++ DRI I+ G L
Sbjct: 172 LRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 68/211 (32%), Positives = 123/211 (58%), Gaps = 8/211 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ + K + A++ + ++ + +I LLG NGAGK+TTI M++G+I P +G+
Sbjct: 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L GK + R +G P+ L+P++ V + L A LKG+K+E + E +
Sbjct: 57 VLFDGKPLDI---AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ + L++ N V LS G ++K+ A+I D +++ILDEP SG+DP ++ L +I++
Sbjct: 114 ERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 630 IK-KGRIILLTTHSMDEAEELGDRIAIMANG 659
+ G+ ++L+TH M+ EEL DR+ ++ G
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-46
Identities = 81/197 (41%), Positives = 119/197 (60%), Gaps = 1/197 (0%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
G+ VN L T+ + LLG NGAGKST M++G+ P G V G + A
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
R +GV PQ+D L E TVRE+L +F G+ +E+V+ +++ L K + V
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVS 171
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILLTTHS 642
LSGGMKR+L+L ALI D +++ILDEPT+G+DP++ L W+ ++ + +G+ ILLTTH
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231
Query: 643 MDEAEELGDRIAIMANG 659
M+EAE L DR+ ++ G
Sbjct: 232 MEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 5e-46
Identities = 69/216 (31%), Positives = 116/216 (53%), Gaps = 8/216 (3%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
L+NL YP G R A+ ++ +++ GE +G NG+GK+T L +++G PT G
Sbjct: 2 LKNLSFSYPDGAR----PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57
Query: 1417 AFIFGKDIRSDP-KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
+ GKD+ K RR +G Q D TV+E + G+ E +++ V E
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEE 117
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L L + FTLSGG K+++++A + DP I++LDEP+ G+DP +R + E++
Sbjct: 118 ALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+L +GKT +I+ TH ++ L R+ ++ G+
Sbjct: 178 KKLK-AEGKT-IIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 7e-46
Identities = 162/528 (30%), Positives = 251/528 (47%), Gaps = 78/528 (14%)
Query: 1098 AIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGL-----DQF 1152
+IV E+E++ K+ GVS W T+ D S + S + +F + G D F
Sbjct: 673 SIVLEKELRLKETLKNQGVSNAVIWC-TWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPF 731
Query: 1153 VGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMG 1212
+ L L + A + L+ FFS ++A +++F + + I+
Sbjct: 732 I-------LFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYF-----TLYLPHILC 779
Query: 1213 LLEATRSANSLLKNFFRLSPGFCFADGLASLALLR-QGMKDKTSDGVFDWNVTSASICYL 1271
R L LSP F G L QG+ + S N+ ++ +
Sbjct: 780 FAWQDRMTADLKTAVSLLSP-VAFGFGTEYLVRFEEQGLGLQWS------NIGNSPL--E 830
Query: 1272 GCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPL-----LQ---- 1322
G E FLL++ + LL + + L+ W+ P Y PL LQ
Sbjct: 831 GDEF--SFLLSMKMMLLDAALYGLLA---WYLDQVF-----PGDYGTPLPWYFLLQESYW 880
Query: 1323 ------SSSESDTLDLNEDIDVQVER------------NRVLSGSVDNAIIYLRNLRKVY 1364
S+ E L+ E + ++E R L G V + +NL K++
Sbjct: 881 LGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCV--KNLVKIF 938
Query: 1365 -PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
P G+ AV L + + FLG NGAGKTTTLS+++G PT GT + GKD
Sbjct: 939 EPSGRP-----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD 993
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
I ++ A R+ +G CPQ + L +LTV EH+ YA++KG + + + ME ++E L
Sbjct: 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WEEAQLEMEAMLEDTGLH 1052
Query: 1484 HAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
H + + + LSGG +RKLSVAIA +GD +V+LDEP++G+DP ++R +W+++ L R G
Sbjct: 1053 HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSG 1110
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+T +I++TH M+EA L RI I+ G+L C G+P LK FG L
Sbjct: 1111 RT-IIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYL 1157
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 7e-46
Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 10/230 (4%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
N I L + K Y KV V+ L+F++ GECFG LG NGAGK+T M+ G
Sbjct: 2 NVAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55
Query: 1412 PTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
P G + G+ + S + AR IG PQFD L TV+E+L ++ R G++ ++ V
Sbjct: 56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV 115
Query: 1472 VMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
+ L+EF L+ A LSGG KR+L++A A+I DP ++ILDEP+TG+DP A+ +
Sbjct: 116 I-PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
WE + L R GKT ++LTTH M EA+ LC R+ ++ G+ G P L
Sbjct: 175 WERLRSLLAR-GKT-ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 8e-46
Identities = 83/197 (42%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
G+ VN L T+ + LLG NGAGKST ML+G+I P G V G+ + +
Sbjct: 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
R +GV PQ+D L PE TVRE+L +F G+ +E+V+ +++ L K ++ V
Sbjct: 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA 134
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILLTTHS 642
LSGGMKR+L+L ALI D +++ILDEPT+G+DP++ L W+ ++ + +G+ ILLTTH
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194
Query: 643 MDEAEELGDRIAIMANG 659
M+EAE L DR+ ++ +G
Sbjct: 195 MEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-45
Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L K + AV ++F+V+ GE G LG NGAGKTTTL M++G P
Sbjct: 1 MITADALTKRF--RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58
Query: 1414 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G A + G D+ +P ARR +G+ L + LT +E+LE +A + G+ + +
Sbjct: 59 AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL- 117
Query: 1474 EKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
E+L + + + + S G ++K+++A A++ DPP+++LDEP+TG+D +A R + E
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
I +L R ++ +TH M E + LC R+ ++ G++ G
Sbjct: 178 FIRQL--RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 3e-45
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 1/211 (0%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I L K + + AV+ + T+ ++ LLG NGAGK+TT+ ML GL+ P G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
A V G ++ + E R+ LG L+ LT RE+LE FA L G+K + L + + E+
Sbjct: 62 ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA 121
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
D +G+ + ++ V S GM++K+++ AL+ D V++LDEPT+G+D + R + I++
Sbjct: 122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 630 IKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
++ G+ IL +TH M E E L DR+ ++ G
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 1e-44
Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 12/219 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ L NL K Y + A+ ++ ++ G +G LG NGAGKTT + +++ P+
Sbjct: 1 LQLENLTKRYGKKR------ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS 53
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
GT I G+D+ P+ RR IGY PQ + TV+E L+ A +KG+ + V E
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE 113
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK-RFMWEV 1533
L +L AKK +LSGG +R++ +A A++GDP I+I+DEP+ G+DP + RF +
Sbjct: 114 VLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR-NL 172
Query: 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
+S L + VIL+TH + + ++LC ++ ++ G+L
Sbjct: 173 LSELGE--DRI-VILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 1e-44
Identities = 80/208 (38%), Positives = 115/208 (55%), Gaps = 5/208 (2%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR A+ ++FSV+ GE FG LG NGAGKTTT+ MI G P G GK +
Sbjct: 8 KRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI- 66
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
AAR IGY P+ L + V + L A++KG+ + + E L +L ++A K
Sbjct: 67 --AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK 124
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
LS GN++K+ A+I DP ++ILDEP +G+DP+ + +VI L+ R GKT VI
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA-RAGKT-VI 182
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
L+TH M + LC R+ ++ G+ G
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 2e-44
Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I R + K Y G+ V+ L + + LLG NGAGK+TT+ ML+GL P G
Sbjct: 8 IDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G+ + + R+ +GV PQ+D L P+ TVRE+L +F G+ ++V ++
Sbjct: 64 ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL 123
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ L +K + V LSGGMKR+L+L AL+ D V++LDEPT+G+DP + L W+ ++
Sbjct: 124 EFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
Query: 630 I-KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ +G+ ILLTTH M+EAE L DR+ ++ G
Sbjct: 184 LLARGKTILLTTHFMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 70/209 (33%), Positives = 123/209 (58%), Gaps = 13/209 (6%)
Query: 459 YATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT 518
++ G A++ + LT+ + + + ++G NG+GKST + +L GL+ PT+G+ LV GK++T
Sbjct: 7 FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLT 66
Query: 519 A-DMDEIRKGLGVCPQYDILFPE-----LTVREHLEMFAVLK-GVKEELLESVVAEMVDE 571
+ E+R+ +G+ Q P+ TV E + F + G+ EE +E V E ++
Sbjct: 67 KLSLKELRRKVGLVFQ----NPDDQFFGPTVEEEV-AFGLENLGLPEEEIEERVEEALEL 121
Query: 572 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 631
VGL + LSGG K+++++ L D +++LDEPT+G+DP R +L+KK+K
Sbjct: 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 632 K-GRIILLTTHSMDEAEELGDRIAIMANG 659
G+ I++ TH +D EL DR+ ++ +G
Sbjct: 182 AEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 4e-43
Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 9/229 (3%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I N+ K Y GGK AV++L + GE +G +G+GKTTT+ MI+ PT
Sbjct: 1 IEFENVTKRYGGGK-----KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS 55
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G FI G+DIR DP RR IGY Q L ++TV+E++ L ++ + ++ +
Sbjct: 56 GEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD 115
Query: 1474 E--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
E LV D + A + LSGG ++++ VA A+ DPP++++DEP +DPI + +
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
E RL GKT ++ TH ++EA L RI IM G++ +G+P +
Sbjct: 176 EEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-42
Identities = 78/218 (35%), Positives = 117/218 (53%), Gaps = 13/218 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +L K Y G KR + ++ V+ GE +GFLG NGAGKTTT+ +I G P
Sbjct: 1 LKTNDLTKTY-GKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS 54
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G GK A R IG + LT +E+L L AR+ G+ + R + E
Sbjct: 55 GEITFDGKSY-QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR----IDE 109
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L L AKK S G K++L +A+A++G+P ++ILDEP+ G+DP + + E+I
Sbjct: 110 VLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
L QG T V++++H ++E Q + RIGI+ G+L
Sbjct: 170 LSLR-DQGIT-VLISSHLLSEIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 4e-42
Identities = 72/218 (33%), Positives = 123/218 (56%), Gaps = 4/218 (1%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L K Y +K AV + E +I LLG NGAGK+T + M+ L+ P +G
Sbjct: 2 LEVTDLTKSYGSKVQ---AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G + D +R+ +GV L+ LT RE+L+ FA L G+ + +++ +AE+
Sbjct: 59 VTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ L + ++ V S GMK+K+++ AL+ D +++LDEPTSG+D + R IK+
Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 630 IK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+K +GR ++ ++H M E E L DR+ ++ G + GS
Sbjct: 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216
|
Length = 245 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-42
Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 14/235 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I N+ K Y K AV + +++ GE +G +G+GKTTTL MI+ PT
Sbjct: 1 MIEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54
Query: 1414 DGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G I G+DI DP RR IGY Q L +LTV E++ ++ G + R+
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114
Query: 1473 MEKLVEFDL----LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
E L L + P LSGG ++++ VA A+ DPPI+++DEP +DPI ++
Sbjct: 115 DELLDLVGLDPSEYAD-RYPH-ELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+ E I L GKT ++ TH ++EA L RI +M G++ +P +
Sbjct: 173 QLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-41
Identities = 76/210 (36%), Positives = 131/210 (62%), Gaps = 4/210 (1%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ L K+Y T+ A++ + + +I+ LG NGAGKSTT+ ++ G +PP +G
Sbjct: 3 IRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
V G+++ + E+++ +G P+++ L+ ++ VRE+L+ A + G+K +LL+ V EM+
Sbjct: 59 VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI 118
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ VGL + + + LS G ++++ L ALI D KV+ILDEPT+G+DP + +IK
Sbjct: 119 ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
Query: 630 IKKGRIILLTTHSMDEAEELGDRIAIMANG 659
I K + I+L+TH M E E + DR+ I+ G
Sbjct: 179 IGKDKTIILSTHIMQEVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++R + K Y G A+ + L++ E + +AL+G +G GKST + ++ GL PT+G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
LV G+ +T G Q D L P LTV +++ + L+GV + E++
Sbjct: 61 VLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ VGL+ N LSGGM+++++L AL D V++LDEP S +D + + +
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIMAN 658
I + G+ +LL TH +DEA L DR+ +++
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-41
Identities = 72/226 (31%), Positives = 132/226 (58%), Gaps = 14/226 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++R + K G+ ++ + L + +ILA+LG +G+GKST + +++GL+ P G+
Sbjct: 9 IEVRGVTK----SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE 64
Query: 510 ALVFGKNI----TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL--KGVKEELLES 563
L+ G++I ++ EIRK +GV Q LF LTV E++ F + + E L+
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIRE 123
Query: 564 VVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+V ++ VGL ++ LSGGM+++++L A+ D +++ LDEPTSG+DP S +
Sbjct: 124 LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 623 TWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+LI+++ G +++ TH +D + DR+A++A+G + G+
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-40
Identities = 67/227 (29%), Positives = 128/227 (56%), Gaps = 8/227 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++I + K + K+ AV+++ + +I LLG NGAGK+TT M++GL+ PT G+
Sbjct: 3 LEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
G ++ EI+ +G P+ L+P++TV + L+ A LKG+ + ++ + +
Sbjct: 59 ITWNGGPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ + + K ++ LS G ++K+ A+I + +++ILDEP SG+DP ++ L I +
Sbjct: 116 ERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175
Query: 630 IK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
+K +G I+ ++H M+ EEL DR+ ++ G G+ ++ +G
Sbjct: 176 LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-40
Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 25/224 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++R L K + + + + L + +ILA++G +G+GKST + ++VGL+ P +G+
Sbjct: 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE 56
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTV--------REHLEMFAVLKGVK 557
L+ G++I+ A++ +R+ +G+ Q LF LTV REH +
Sbjct: 57 VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRL-------S 109
Query: 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
EE + +V E ++ VGL ++ LSGGMK++++L AL D ++++ DEPT+G+DP
Sbjct: 110 EEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169
Query: 618 YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+ + LI+ +KK G ++ TH +D A + DRIA++ +G
Sbjct: 170 IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 19/226 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++R L K + G A++ + ++ +I L+G NGAGK+T +++ G + PT+G
Sbjct: 1 LEVRGLTKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS 56
Query: 510 ALVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLEM-----------FAVLKGV 556
L G++IT EI R G+G Q LFPELTV E++ + A +
Sbjct: 57 VLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116
Query: 557 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+ E E E+++ VGLAD + LS G +R+L + AL D K+++LDEP +G++
Sbjct: 117 EREARERA-EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 617 PYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 661
P +LI++++ +G +LL H MD L DR+ ++ G +
Sbjct: 176 PEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-39
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 3/216 (1%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
AV ++F + GE G LG NGAGKTT L MI+ P G I G D DP RR
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1494
IG L LT +E+L+ +AR+ G++ + + E LL++ + S
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136
Query: 1495 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554
G K+K+++A A++ DP I++LDEP++G+D +R + I +L +G+ AVI ++H M
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGR-AVIFSSHIMQ 194
Query: 1555 EAQALCTRIGIMVGGQLRCIGSPQHLKTRFG-NFLE 1589
E +ALC R+ ++ G++ GS + L R LE
Sbjct: 195 EVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230
|
Length = 245 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I NL YPG K A+ ++ ++ GE +G NG+GK+T L +++G PT
Sbjct: 3 MIEAENLSFRYPGRKA-----ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57
Query: 1414 DGTAFIFGKDIRS--DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDD 1470
G + G D S R+ +G Q D L TV++ + G+ +++
Sbjct: 58 SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE 117
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V E L L + +P F LSGG K+++++A + P I++LDEP+ G+DP +R +
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
E++ +L GKT +I+ TH + R+ ++ G++ G P
Sbjct: 178 LELLKKLKEEGGKT-IIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 3e-39
Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 13/223 (5%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
K K AV +++F V GE FG LG NGAGKTTT MI G PT+G G +
Sbjct: 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS-- 67
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLK 1483
+ + IGY P+ L +TV++ L+ A +KG+ + ++ +E+ +++
Sbjct: 68 -QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA-WLER---LEIVG 122
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
K LS GN++K+ A+I +P ++ILDEP +G+DP+ + + I L G
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GA 181
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
T +I ++H M + LC R+ ++ GQ G+ + ++ FG
Sbjct: 182 T-IIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223
|
Length = 300 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 3e-39
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
L+ L K Y A+ L+ +V+ GE LG +G GKTT L +I+G E P G
Sbjct: 3 LKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
Query: 1417 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1476
I G+D+ + RR IG Q AL +LTV E++ +++GV + + V E L
Sbjct: 57 ILIDGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1477 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1536
L + LSGG ++++++A A+ +P +++LDEP + +D + + E +
Sbjct: 116 ELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
L G T I TH EA AL RI +M G++ +G
Sbjct: 176 LQRELGITT-IYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 4e-39
Identities = 58/212 (27%), Positives = 112/212 (52%), Gaps = 10/212 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++I + K + + + L++ + + +A+LG +G GKST + ++ GL PT+G+
Sbjct: 4 LEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L+ G+ +T +G Q D L P LTV +++ + L+G + E++
Sbjct: 60 VLLDGRPVT----GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ VGLA + LSGGM++++++ AL K+++LDEP +D + + +
Sbjct: 116 ELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ + + +LL TH +DEA L DR+ +++N
Sbjct: 176 LWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 5e-39
Identities = 71/215 (33%), Positives = 124/215 (57%), Gaps = 13/215 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ L K Y + R A++ L LT+ + LALLG +G GK+T + ++ GL P +G+
Sbjct: 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L+ G+++T + R+ +G+ Q LFP LTV E++ L+GV + + + V E++
Sbjct: 57 ILIDGRDVT-GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ VGL +N LSGG +++++L AL + +++LDEP S +D +L +L ++
Sbjct: 116 ELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDA---KLREELREE 172
Query: 630 IKK-----GRIILLTTHSMDEAEELGDRIAIMANG 659
+K+ G + TH +EA L DRIA+M G
Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 12/230 (5%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A + L+N+RK + + + + ++ GE LG +G GK+T L MI+G E P
Sbjct: 2 AELELKNVRKSFG------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
T G I G+D+ P R I Q AL ++TV E++ +++GV + +D V
Sbjct: 56 TSGEILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV 114
Query: 1473 ME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
E KL+ + L + +KP LSGG ++++++A A++ P + +LDEP + +D + M
Sbjct: 115 KEVAKLLGLEHLLN-RKPL-QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
I +L R G T + TH EA L RI +M G+++ +G+P L
Sbjct: 173 RSEIKKLHERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 10/228 (4%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
NL K Y GKR V+ ++ SV+ GE G LG NGAGKTTT MI G P G
Sbjct: 3 AENLSKRY--GKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 1417 AFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
+ G+DI P K AR IGY PQ ++ LTV+E++ I+G+++ ++ + E
Sbjct: 57 ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L EF + K + +LSGG +R++ +A A+ +P ++LDEP G+DPIA + + ++I
Sbjct: 117 LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
L R V++T H++ E ++ R I+ G++ G+P+ +
Sbjct: 177 KILKDR--GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 7e-38
Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 16/235 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHS-LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I LR L K + GG+ V + V+ GE +G +G+GK+T L +I G P
Sbjct: 1 IELRGLTKSF-GGRT------VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD 53
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRM 1468
G I G+DI ++ RR +G Q AL + LTV E++ R +E +
Sbjct: 54 SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEI 113
Query: 1469 DDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
++V+EKL L P+ LSGG K+++++A A+ DP +++ DEP+ G+DPIA
Sbjct: 114 REIVLEKLEAVGLRGAEDLYPA-ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
+ ++I L G T I+ TH ++ A A+ RI ++ G++ G+P+ L+
Sbjct: 173 GVIDDLIRSLKKELGLT-SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 9/222 (4%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L+NL K Y GG A+ ++ S++ GE +G +G+GK+T L+++ G + PT
Sbjct: 1 IELKNLSKTYGGGGEK--VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58
Query: 1415 GTAFIFGKDIRSDPKAARRL-----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
G + G DI + IG+ Q LL LT E++EL + GV +
Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
+ E L L LSGG ++++++A A+ DP I++ DEP+ +D +
Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ E++ L+ G T +++ TH A+ RI + G++
Sbjct: 179 VMELLRELNKEAGTT-IVVVTHDPELAE-YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 3e-37
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +RN+ K Y GG A A+ ++ SV+ GE +G +G GK+T L +I+G E PT
Sbjct: 1 LEVRNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G + G+ + GY Q DALL +LTV +++ L ++GV + + E
Sbjct: 59 GEVLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L L LSGG ++++++A A+ DP +++LDEP + +D + + + E +
Sbjct: 115 LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566
+ GKT V+L TH ++EA L R+ ++
Sbjct: 175 LDIWRETGKT-VLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 61/223 (27%), Positives = 118/223 (52%), Gaps = 11/223 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ L + T G+ A++ + ++ + + L L+G +G+GKST ++GL+ PT+G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 510 ALVFGKNITADMDEI----RKGLGVCPQ--YDILFPELTVREHLE--MFAVLKGVKEELL 561
+ GK++ + RK + + Q L P +T+ E + + K K+E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 562 ESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
+ V ++ VGL ++V N LSGG ++++++ AL + K++I DEPTS +D
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 621 RLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
L+KK+++ G +L TH + ++ DR+A+M G +
Sbjct: 182 AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-37
Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ + NL Y G K + L+FS+ GE G LG NG+GK+T L ++G P
Sbjct: 1 MMLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP 54
Query: 1413 TDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMD 1469
G + GKDI S PK + + Y PQ + LTV E + L Y + +
Sbjct: 55 KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKE 114
Query: 1470 D--VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
D +V E L L A +P LSGG ++++ +A A+ + PI++LDEP++ +D +
Sbjct: 115 DEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
+ E++ L+ +G T V++ H +N A + ++ G++ G+P+ + T
Sbjct: 175 IEVLELLRDLNREKGLT-VVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 4e-37
Identities = 72/207 (34%), Positives = 115/207 (55%), Gaps = 3/207 (1%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A+ ++F Q G GFLG NGAGK+TT+ +I+G P G+ + G+D+ +PK +R
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1494
IGY P+ + L + V+E+L+ A I G+ + V E + L K LS
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSK 136
Query: 1495 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554
G ++++ +A A+I DP ++ILDEP+TG+DP + VI + + KT +IL+TH M
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKT-IILSTHIMQ 193
Query: 1555 EAQALCTRIGIMVGGQLRCIGSPQHLK 1581
E +A+C R+ I+ G++ L
Sbjct: 194 EVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 12/232 (5%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
D + + NL K Y KR KV V+ ++ V +GE G LG NGAGKTTT MI G
Sbjct: 1 DMSTLVAENLAKSY--KKR---KV-VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV 54
Query: 1411 YPTDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYR 1467
P G + +DI P K AR IGY PQ ++ LTV++++ I+ +
Sbjct: 55 RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKA 114
Query: 1468 MDDVVMEKLV-EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
++ L+ EF + +++LSGG +R++ +A A+ +P ++LDEP G+DPIA
Sbjct: 115 ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ +I L R V++T H++ E +C R I+ G++ GSP+
Sbjct: 175 VIDIQRIIKHLKDR--GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPE 224
|
Length = 243 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 5e-37
Identities = 64/218 (29%), Positives = 121/218 (55%), Gaps = 13/218 (5%)
Query: 458 VYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 517
+ G A+ + L + + + + L+G NG+GKST + +L GL+ PT+G+ LV G +
Sbjct: 9 LSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68
Query: 518 TADMD--EIRKGLGVCPQYDILFPEL-----TVREHLEMFAVLKGVKEELLESVVAEMVD 570
+++ E+R+ +G+ Q P+ TV + + G+ E +E VAE ++
Sbjct: 69 SSEKSLLELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALE 124
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
VGL + ++ LSGG K+++++ L ++++LDEPT+G+DP R +L+KK+
Sbjct: 125 LVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184
Query: 631 KK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
K+ G+ I++ TH ++ E DR+ ++ +G + G
Sbjct: 185 KEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 7e-37
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 60/215 (27%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ NL Y G + A+ +++ +++AGE +G NG+GK+T L I+G PT G
Sbjct: 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE 55
Query: 1417 AFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1475
I GKDI + + RR IGY PQ
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ----------------------------------- 80
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
LSGG ++++++A A++ +P +++LDEP++G+DP ++ + E++
Sbjct: 81 ----------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1536 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
L+ +G+T VI+ TH A+ R+ ++ G+
Sbjct: 125 ELA-EEGRT-VIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 9e-37
Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
++ ++NL +P G S A+ ++FS++ GE G +G +G+GK+T I G PT
Sbjct: 1 LLEVKNLSVSFPTGGGS--VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT 58
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQ--FDALLEYLTVQEHLE--LYARIKGVAE 1465
G+ GKD+ R K R+ I Q +L +T+ E + L K +
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 1466 YRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
+ V+ LV L + + LSGG ++++++A A+ +P ++I DEP++ +D
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ + +++ +L G ++ TH + + R+ +M G++
Sbjct: 179 SVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 75/217 (34%), Positives = 128/217 (58%), Gaps = 9/217 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K Y K+ AV+ + LT+ E + L L+G +G+GK+TT+ M+ LI PT+G+
Sbjct: 2 IEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
Query: 510 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
L+ G++I D E+R+ +G Q LFP LTV E++ L G +E ++ E+
Sbjct: 58 ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADEL 117
Query: 569 VDEVGL--ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 626
+D VGL ++ + LSGG ++++ + AL D ++++DEP +DP + + +
Sbjct: 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177
Query: 627 IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
IK+++K G+ I+ TH +DEA +L DRIA+M G +
Sbjct: 178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214
|
Length = 309 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-36
Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 57/211 (27%)
Query: 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 510
+I L Y + A++++ LTL +I+AL+G NG+GKST + + GL+ PT+G+
Sbjct: 1 EIENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI 56
Query: 511 LVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L+ GK+I ++E+R+ +G PQ
Sbjct: 57 LIDGKDIAKLPLEELRRRIGYVPQ------------------------------------ 80
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
LSGG +++++L AL+ + +++LDEPTSG+DP S +L+++
Sbjct: 81 ---------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 630 I-KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ ++GR +++ TH + AE DR+ ++ +G
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-36
Identities = 67/215 (31%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L+ Y G + + LT+ E +I+ALLG NGAGK+T + ++GL+PP +G
Sbjct: 1 LEVENLNAGY----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS 56
Query: 510 ALVFGKNIT-ADMDEI-RKGLGVCPQYDILFPELTVREHLEM--FAVLKGVKEELLESVV 565
G++IT E R G+G P+ +FPELTV E+L + +A + ++ LE V
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY 116
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E+ L ++ + LSGG ++ L++ AL+ K+++LDEP+ G+ P + ++
Sbjct: 117 -ELFPR--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 626 LIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANG 659
I++++ + ILL + A E+ DR ++ G
Sbjct: 174 AIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 49/218 (22%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ + K Y K +N + L + +I+ALLG +G+GKST + + GL P +G
Sbjct: 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
Query: 510 ALVFGKNITADMDEI---RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA 566
L+ G+++T DE+ R+ +G+ Q LFP LTV E
Sbjct: 57 ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE--------------------- 95
Query: 567 EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLT 623
NI + LSGG +++++L AL D V++LDEPTS +DP +R
Sbjct: 96 ------------NIAL-GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-- 140
Query: 624 WQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
L+K ++ G ++L TH +DEA L DR+ ++ +G
Sbjct: 141 -ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 15/219 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ L K Y + VN + L++ + +I+ LLG NGAGK+TT M+VGL+ P +G
Sbjct: 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 510 ALVFGKNITAD-MDE-IRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLES 563
L+ G++IT M + R G+G PQ +F +LTV E+ LE+ + K +EE LE
Sbjct: 57 ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE- 115
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
E+++E + +LSGG +R++ + AL + K ++LDEP +G+DP +++
Sbjct: 116 ---ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
Query: 624 WQLIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANGSL 661
++IK +K I +L+T H++ E + DR I+ G +
Sbjct: 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKV 211
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 5e-35
Identities = 62/214 (28%), Positives = 108/214 (50%), Gaps = 11/214 (5%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A++ + + K + G + + SV+ GE LG +G GK+T L +I+G E P
Sbjct: 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
T G + G+ + IGY Q DALL +LTV +++ L ++G ++ +
Sbjct: 56 TSGEVLLDGRPV----TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERA 111
Query: 1473 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
E L L K LSGG ++++++A A+ P +++LDEP +D + + + +
Sbjct: 112 KELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQD 171
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566
+ RL KT V+L TH ++EA L R+ ++
Sbjct: 172 ELLRLWEETRKT-VLLVTHDVDEAVYLADRVVVL 204
|
Length = 248 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 6e-35
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 15/242 (6%)
Query: 1348 GSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS 1407
+ +I +R + K D + + + V GE LG +G+GK+T L +I
Sbjct: 2 SASPEPLIEVRGVTK-----SFGDRVI-LDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55
Query: 1408 GEEYPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR-IKG 1462
G P G I G+DI + R+ +G Q AL LTV E++ R
Sbjct: 56 GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 1463 VAEYRMDDVVMEKL--VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
+ E + ++V+ KL V PS LSGG ++++++A A+ DP ++ LDEP++
Sbjct: 116 LPESLIRELVLMKLELVGLRGAAADLYPS-ELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
G+DPI+ + E+I L+ G T VI+ TH ++ + R+ ++ G++ G+P+ L
Sbjct: 175 GLDPISAGVIDELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233
Query: 1581 KT 1582
Sbjct: 234 LA 235
|
Length = 263 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 9e-35
Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 14/226 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L+N+ K+Y G + A+ + ++AGE +G +G+GK+T L+++ G + PT
Sbjct: 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 1414 DGTAFIFGKDIR--SDPKAA---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
G I GKD+ S+ + A R+ IG+ Q LL LTV E++EL I G + R
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1469 DDVVMEKLVEFDL--LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG-MDPI 1525
E L L KKPS LSGG ++++++A A+I +P I++ DEP TG +D
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-ELSGGQQQRVAIARALINNPKIILADEP-TGNLDSK 176
Query: 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ + E++ L+ +GKT +I+ TH A R+ + G++
Sbjct: 177 TAKEVLELLRELNKERGKT-IIMVTHDPELA-KYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 73/218 (33%), Positives = 121/218 (55%), Gaps = 10/218 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K Y G AVN+L L + + + L L+G +G+GK+TT+ M+ LI PT+G+
Sbjct: 1 IEFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57
Query: 510 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ G++I D E+R+ +G Q LFP +TV E++ + L +E + E+
Sbjct: 58 IFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL 117
Query: 569 VDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
+ VGL D R LSGG ++++ + AL D ++++DEP +DP + +
Sbjct: 118 LALVGL-DPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
K++++ G+ I+ TH +DEA L DRIAIM NG +
Sbjct: 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-34
Identities = 67/218 (30%), Positives = 122/218 (55%), Gaps = 15/218 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ + K + G+ + + L + + + + LLG +G GKST + M+ GL PT+G+
Sbjct: 4 LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEM 568
L+ G+++T D+ ++G+ + Q L+P +TV E++ F + L+GV + ++ V E+
Sbjct: 60 ILIDGRDVT-DLPPEKRGIAMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDKRVKEV 117
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-- 626
+GL +N LSGG +++++L AL+ KV +LDEP S +D +L +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA---KLRVLMRS 174
Query: 627 -IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
IKK+ + G + TH EA L DRI +M +G +
Sbjct: 175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212
|
Length = 338 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 69/218 (31%), Positives = 124/218 (56%), Gaps = 6/218 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ + KV+ G A+ + L++ + +I ++G +GAGKST I + GL PT+G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
LV G ++T ++ + R+ +G+ Q+ L TV E++ + + GV + +E V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E+++ VGL DK + LSGG K+++ + AL + KV++ DE TS +DP + +
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
L++ I + G I+L TH M+ + + DR+A+M G +
Sbjct: 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 5e-34
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 44/219 (20%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ L+N+ K Y K ++ ++ +++AGE LG +G+GK+T L I+G E P
Sbjct: 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54
Query: 1415 GTAFIFGKDI---RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
G+ I G+D+ + RR IG Q AL +LTV E++
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI----------------- 97
Query: 1472 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
+ LSGG ++++++A A+ DP +++LDEP++ +DPI +R +
Sbjct: 98 -----------------ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
++ L + G T V+L TH ++EA L R+ ++ G+
Sbjct: 141 ALLKSLQAQLGIT-VVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-34
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 11/212 (5%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1432
+ ++ +V GE LG NGAGKTT L I G P G+ G+DI P + AR
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 1433 RLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPS 1489
IGY P+ + LTV+E+L L YAR + + R++ V F LK K+ +
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV----YELFPRLKERRKQLA 130
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1549
TLSGG ++ L++A A++ P +++LDEPS G+ P ++E I L R ++L
Sbjct: 131 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL--RDEGVTILLV 188
Query: 1550 THSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581
+ A + R ++ G++ G+ L
Sbjct: 189 EQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-34
Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 17/205 (8%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD--EIRK 526
++ L ++ + +I +LG NG+GKST + L GL+ P +G+ L+ GK+I A + E+ K
Sbjct: 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI-ASLSPKELAK 76
Query: 527 GLGVCPQYDILFPELTVRE--------HLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 578
L PQ LTV E HL +F KE+ E +V E ++ +GL
Sbjct: 77 KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS--KED--EEIVEEALELLGLEHLA 132
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRII 636
+ V LSGG ++++ + AL ++ +++LDEPTS +D +L++ + +KG +
Sbjct: 133 DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192
Query: 637 LLTTHSMDEAEELGDRIAIMANGSL 661
++ H ++ A D + ++ +G +
Sbjct: 193 VMVLHDLNLAARYADHLILLKDGKI 217
|
Length = 258 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE---I 524
A+N L L + ++ ++G NGAGK+T + ++ G P G L G ++T + E
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG-LPEHQIA 75
Query: 525 RKGLGVCPQYDILFPELTVREHLEM--------FAVL-KGVKEELLESVVAEMVDEVGLA 575
R G+G Q +F LTV E+LE+ FA L + E + + E+++ +GLA
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRI-EEVLETIGLA 134
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635
D+ + + LS G K+ L +G+ L+ D K+++LDEP +GM T +L+K +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+++ H M+ + D++ ++ GS+ GS
Sbjct: 195 VVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 22/244 (9%)
Query: 446 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 505
I++ L Y + + + L++ + +I AL+G NGAGKST + ++GL+ P
Sbjct: 1 MMPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP 56
Query: 506 TTGDALVFGKNITADMDEIRKGLGVCPQ---YDILFPELTVREHLEMFAVLKGVKEELLE 562
++G+ +FGK + +R +G PQ D FP +TV++ + + K L
Sbjct: 57 SSGEIKIFGKPVRKRRKRLR--IGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN 113
Query: 563 SVVAEMVDE----VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
E VDE VG+ D + + LSGG K+++ L AL + +++LDEP +G+D
Sbjct: 114 KKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 619 SMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG------SSLFLK 671
+ + L+K++++ G+ +L+ TH + DR+ I N L G + L+
Sbjct: 174 GQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV-ICLNRHLIASGPPEEVLTEENLE 232
Query: 672 HQYG 675
+G
Sbjct: 233 KAFG 236
|
Length = 254 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-33
Identities = 81/278 (29%), Positives = 125/278 (44%), Gaps = 21/278 (7%)
Query: 1359 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418
+L + +RS AV ++F + GE GFLG NGAGK+TTL M++G PT G
Sbjct: 25 SLNHFFHRKERSIE--AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82
Query: 1419 IFGKDIRSDPKAARRLIGYC-PQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEK 1475
+ GKD + R IG Q L L + LE+ I + E+ ++
Sbjct: 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER---LDF 139
Query: 1476 LVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK----RFM 1530
L E DL K P LS G + + +A A++ P ++ LDEP+ G+D A+ F+
Sbjct: 140 LTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
E + + V+LTTH ++ LC R+ ++ GQL G+ L+ +FG + E
Sbjct: 200 KEY-----NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254
Query: 1591 EV---KPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLD 1625
V + +S + L I + R D
Sbjct: 255 SVELKQAKSLSQLALLGDVTIEEGLNIKNDVSREESAD 292
|
Length = 325 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 4e-33
Identities = 65/219 (29%), Positives = 125/219 (57%), Gaps = 8/219 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ L K Y A+ + L++ + + +A++G +G+GKST +++L GL PT+G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 510 ALVFGKNIT----ADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
V G +I+ ++ R + +G Q L P+LT E++E+ +L GV ++
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
E+++ VGL D++N LSGG ++++++ AL D K+++ DEPT +D + +
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 625 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+L++++ K G I++ TH + A E DRI + +G +
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 7/220 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L Y +R A++ + T+ + +ALLG NGAGKST S+L L G
Sbjct: 2 LEVAGLSFRYGARR----ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
V G ++ LGV Q L +L+VR++L A L G+ + +AE++
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+GLA++ + VR L+GG +R++ + AL+ +++LDEPT G+DP S ++
Sbjct: 118 ARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
+ +G +L TH +DE E DR+ ++ G + G++
Sbjct: 178 LARDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-33
Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L N+ K Y VA+ ++ ++ GE F LG +G GKTT L +I+G E PT
Sbjct: 1 IELENVSKFY------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS 54
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G + GKDI + P +R + Q AL +LTV E++ R+K + + + + V E
Sbjct: 55 GEILLDGKDITNLP-PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE 113
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L L +A + LSGG ++++++A A++ +P +++LDEP +D ++ M +
Sbjct: 114 ALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF-GNFL 1588
RL G T + TH EA + RI +M G+++ IG+P+ + RF +F+
Sbjct: 174 KRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-33
Identities = 59/220 (26%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ + K+Y A+ + L + + +A++G +G+GKST +++L GL PT+G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 510 ALVFGKNITA----DMDEIRKG-LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
L+ GK++T ++ ++R+ +G Q L P+LTV E++E+ ++ G +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 565 VAEMVDEVGLADKVNIV-VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
E+++ +GL D++ LSGG ++++++ ALI + K+++ DEPT +D + +
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 624 WQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+L++++ ++G+ I++ TH + A + DR+ + +G +
Sbjct: 182 LELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 16/223 (7%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----- 504
I++R L+ Y G+ A+ + L + + +I AL+G +G GKST + +L L
Sbjct: 1 IELRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA 56
Query: 505 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 560
P G+ L+ GK+I D+ E+R+ +G+ Q FP ++ +++ L G+K E
Sbjct: 57 PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEE 115
Query: 561 LESVVAEMVDEVGLADKVN--IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
L+ V E + + L D+V + LSGG +++L L AL + +V++LDEPTS +DP
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 619 SMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
S +LI ++KK I++ TH+M +A + DR A + NG L
Sbjct: 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-33
Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 28/224 (12%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L Y G A+ + L + +I+ALLG NGAGK+T + ++GL+ P +G
Sbjct: 4 LEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
Query: 510 ALVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 567
+ G++IT E R G+ P+ +FP LTV E+L + A + KE
Sbjct: 60 IIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-----QER 114
Query: 568 MVDEV-----GLADKVNIVVRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
++EV L ++ N RA LSGG ++ L++ AL+ K+++LDEP+ G+ P
Sbjct: 115 DLEEVYELFPRLKERRN--QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP--- 169
Query: 621 RLTWQL---IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
++ ++ IK+++K G ILL + A E+ DR ++ NG
Sbjct: 170 KIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 9e-33
Identities = 65/262 (24%), Positives = 122/262 (46%), Gaps = 16/262 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---- 505
+++ L +AT G AV + + +IL ++G +G+GKST L+GL+P
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 506 TTGDALVFGKNIT----ADMDEIRKG-LGVCPQ--YDILFPELTVREHL-EMFAVLKGVK 557
T+G+ ++ G+++ +M ++R + + Q L P +T+ + + E +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 558 EELLESVVAEMVDEVGLADKVNIVV--RALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
E++++VGL D LSGGM++++ + +AL K++I DEPT+ +
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 616 DPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673
D + L+K + + G +L TH + EL DR+ +M G + G + +
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
Query: 674 YGVGYTLTLVKSAPDASAAADI 695
YT L+ + P I
Sbjct: 246 PQHPYTRGLLAAVPRLGDEKII 267
|
Length = 539 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 523
VN + L + E +I ++G +G+GKST + + LI PT+G L+ G++I A ++ E
Sbjct: 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRE 98
Query: 524 IR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582
+R K + + Q L P TV E++ ++GV E AE ++ VGL +
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK----------IKK 632
LSGGM++++ L AL D ++++DE S +DP LI++ +
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP--------LIRREMQDELLRLQAEL 210
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
+ I+ TH +DEA LGDRIAIM +G L G
Sbjct: 211 QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 2e-32
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 461 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 519
+KR G AVN + L + +I+ L+G NGAGK+T +++ G P++G + G++IT
Sbjct: 11 SKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITG 70
Query: 520 -DMDEI-RKGLGVCPQYDILFPELTVREHL-------EMFAVLKGVKEELLESVVA---- 566
I R G+ Q LFP LTV E++ + L G E A
Sbjct: 71 LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA 130
Query: 567 -EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E+++ VGL + + LS G +R+L + AL K+++LDEP +G++P +
Sbjct: 131 RELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
LI++++ G ILL H M L DRI ++ G
Sbjct: 191 LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 12/223 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ L N+ K + A+ L + GE LG +G GKTTTL MI+G E PT
Sbjct: 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G +I G+D+ +D R I Q AL ++TV +++ +++ V + +D+ V E
Sbjct: 55 GRIYIGGRDV-TDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE 113
Query: 1475 --KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
+L++ + L +KP LSGG ++++++ A++ +P + ++DEP + +D + M
Sbjct: 114 VAELLQIEHLLD-RKPK-QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
+ RL R G T I TH EA + RI +M GQ++ IG
Sbjct: 172 ELKRLQQRLGTT-TIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 13/207 (6%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---TTGDALVFGKNITADMDEIR 525
+N + L + Q++A+LG +G+GK+T + + G + T+G L G+ D + +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD--QFQ 80
Query: 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL---ADKV--NI 580
K + Q DIL P LTVRE L A+L+ + +++ + V++V L A
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTRIGGN 139
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLT 639
+V+ +SGG +R++S+ + L+ D KV+ILDEPTSG+D ++ + ++ ++ RI++LT
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILT 199
Query: 640 THS-MDEAEELGDRIAIMANGSLKCCG 665
H + L DRI ++++G + G
Sbjct: 200 IHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-32
Identities = 77/262 (29%), Positives = 126/262 (48%), Gaps = 24/262 (9%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+ +RN+ K + AV ++ ++ GE LG +G GKTT L MI+G E
Sbjct: 2 PKPALEIRNVSKSF------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55
Query: 1411 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHL--ELYARIKGVAEYRM 1468
P+ G + G+DI P +R IG Q AL ++TV+E++ L R K + + +
Sbjct: 56 QPSSGEILLDGEDITDVP-PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR-KKLKKAEI 113
Query: 1469 DDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
V E L L A KP LSGG ++++++A A++ +P +++LDEP + +D +
Sbjct: 114 KARVEEALELVGLEGFADRKPH-QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ----HLKTR 1583
M + + L G T + TH EA A+ RI +M G++ +G+P+ TR
Sbjct: 173 EQMRKELKELQRELGITF-VYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATR 231
Query: 1584 FG-------NFLELEVKPTEVS 1598
F N E +V +
Sbjct: 232 FVADFIGESNIFEGKVVERLGA 253
|
Length = 352 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 4e-32
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 42/220 (19%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ NL Y G + + L+ S++AGE G LG NGAGK+T L ++G P+ G
Sbjct: 2 VENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE 55
Query: 1417 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1475
+ GKD+ S PK R I Y PQ +E
Sbjct: 56 ILLDGKDLASLSPKELARKIAYVPQ-------------------------------ALEL 84
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
L L A +P LSGG ++++ +A A+ +PPI++LDEP++ +D + + E++
Sbjct: 85 L---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1536 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
RL+ +GKT V++ H +N A R+ ++ G++ G
Sbjct: 142 RLARERGKT-VVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 5e-32
Identities = 71/215 (33%), Positives = 125/215 (58%), Gaps = 14/215 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ + L K + G AVN++ LT+ +N + LLG NGAGKST + M+ G++ PT+G+
Sbjct: 1 LETKNLSKRF----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56
Query: 510 ALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ G T D+ +I G + L+ LT RE+L++ L G+ + S + E+
Sbjct: 57 IIFDGHPWTRKDLHKI----GSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEV 108
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 628
++ V L + + S GMK++L + IAL+ K++ILDEPT+G+DP ++ +LI+
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168
Query: 629 KI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLK 662
++G ++L++H + E ++L D I I++ G L
Sbjct: 169 SFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-32
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 21/241 (8%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ +R L K + GG AV+ ++ V+ GE G +G NGAGKTT ++I+G P
Sbjct: 3 PLLEVRGLSKRF-GGL-----TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP 56
Query: 1413 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV------- 1463
+ GT G+DI P + AR I Q L LTV E++ + A +
Sbjct: 57 SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGR 116
Query: 1464 -----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
E + E L L + A +P+ LS G +R+L +A A+ P +++LDEP
Sbjct: 117 PRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP 176
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ G++P + E+I L +G ++L H M L RI ++ G++ G+P+
Sbjct: 177 AAGLNPEETEELAELIRELR-DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235
Query: 1579 H 1579
Sbjct: 236 E 236
|
Length = 250 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAA 1431
VA+ ++FSV+ GE G +G NGAGKTT ++ISG PT G+ G+DI P + A
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV----------VMEKLVEFDL 1481
R IG Q L LTV E++ + A+ + + + E L L
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 1482 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
A +P+ LS G +R+L +A A+ DP +++LDEP+ G++P + E+I L R+
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL--RE 191
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579
V+L H M+ +L R+ ++ G++ G+P
Sbjct: 192 RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 13/219 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ L K Y + VN + L + +I+ LLG NGAGK+TT M+VGL+ P +G
Sbjct: 5 LVAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60
Query: 510 ALVFGKNITAD-MDE-IRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLES 563
L+ ++IT M + R G+G PQ +F +LTV ++ LE+ E E
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE- 119
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
+ +++E + + +LSGG +R++ + AL + K ++LDEP +G+DP ++
Sbjct: 120 -LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
Query: 624 WQLIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANGSL 661
++IK +K I +L+T H++ E ++ DR I+++G +
Sbjct: 179 QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217
|
Length = 243 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 13/221 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ +R L VY + A+N++ L + + L ++G +G+GKST +L GL P++G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 510 ALVFGKNITAD--MDEIRKGLGVCPQ--YDILFPELTVREHLEMFAVLKGVKEELLESVV 565
L+ GK + + + + Q Y L P TV L G+ + + +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRI 121
Query: 566 AEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
AE++D+VGL + R LSGG ++++++ ALI + K++ILDEPTS +D
Sbjct: 122 AELLDQVGLPPSF--LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ 179
Query: 623 TWQLIKKIKKGR--IILLTTHSMDEAEELGDRIAIMANGSL 661
L+ ++KK R L +H + E + DRIA+M NG +
Sbjct: 180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
|
Length = 252 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 66/219 (30%), Positives = 127/219 (57%), Gaps = 7/219 (3%)
Query: 450 IQIRKLHKVYATKRGNCC-AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
I++ + K + A++ + L + + +I ++G++GAGKST + ++ L PT+G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 509 DALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
V G+++TA ++ ++R+ +G+ Q+ L TV E++ L GV + ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
VAE+++ VGL+DK + LSGG K+++++ AL + K+++ DE TS +DP + +
Sbjct: 122 VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181
Query: 625 QLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+L+K I + G I+L TH M+ + + DR+A++ G L
Sbjct: 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
|
Length = 339 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-31
Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 13/274 (4%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
K++ K V+ ++ GE F +G +G+GK+TT+ M++ PT G FI G++I
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 1428 PKA-----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
R+ IG Q AL ++T+ ++ L + G E + +E L L
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
++ + LSGG ++++ +A A+ +P I+++DE + +DP+ + M + + +L
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH-LKTRFGNFLELEVKPTEVSSV- 1600
KT ++ TH ++EA + RI IM G++ +G+P L+ ++E + ++S V
Sbjct: 181 KT-IVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVF 239
Query: 1601 DLEDLCQIIQERVFDI-----PSQRRSLLDDLEV 1629
D E + Q + P L+ D V
Sbjct: 240 DAERIAQRMNTGPITKTADKGPRSALQLMRDERV 273
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 5e-31
Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 510
++ L+ Y G + + L + + ++ +LG NG GK+T + L+GL+P +G
Sbjct: 2 EVSNLNVYY----GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57
Query: 511 LVFGKNITAD--MDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKG----VKEELLE- 562
+ G++IT + R G+ PQ +FP LTV E+L A L + +E+ E
Sbjct: 58 RLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYEL 117
Query: 563 -SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
V+ EM+ G D LSGG +++L++ AL+ K+++LDEPT G+ P ++
Sbjct: 118 FPVLKEMLGRRG-GD--------LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168
Query: 622 LTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
++I++++ G ILL +D A EL DR +M G +
Sbjct: 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-31
Identities = 60/214 (28%), Positives = 115/214 (53%), Gaps = 2/214 (0%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431
A+ A+ ++F+V+ G LG NGAGK+T S+++ +G + G D+R P+AA
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1491
+G Q L L+V+++L +A + G++ + E L L + A
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRE 132
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
L+GG++R++ +A A++ P +++LDEP+ G+DP ++ + + L+ QG +V+ TH
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG-LSVLWATH 191
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585
++E +A R+ ++ G++ G+ L+ G
Sbjct: 192 LVDEIEA-DDRLVVLHRGRVLADGAAAELRGATG 224
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-31
Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 6/218 (2%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
K++ V V+ ++ V+ GE F +G +G+GK+T L I+ PT G I G+DI +
Sbjct: 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM 91
Query: 1428 PKAA-----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
+ R+ I Q ALL + TV E++ ++GV ++ E L L
Sbjct: 92 SRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE 151
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
K LSGG ++++ +A A+ DP I+++DE + +DP+ +R M + + RL
Sbjct: 152 GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
KT ++ TH ++EA L RI IM G+L +G+P+ +
Sbjct: 212 KT-IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 79/216 (36%), Positives = 122/216 (56%), Gaps = 17/216 (7%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
+NL K + GK++ AV++++ +V +G LG NGAGK+T L MI+G PT G
Sbjct: 4 KNLSKRF--GKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 1418 FIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1476
G R D IG + L E LT +E+L+++ + G+ + R+D+V+ +
Sbjct: 58 IFDGHPWTRKDLHK----IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVL--NI 111
Query: 1477 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1536
V DL KK + S G K++L +AIA++ P ++ILDEP+ G+DPI + + E+I R
Sbjct: 112 V--DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI-R 168
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
QG T VIL++H ++E Q L IGI+ G L
Sbjct: 169 SFPEQGIT-VILSSHILSEVQQLADHIGIISEGVLG 203
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 11/224 (4%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L+N+ KV+ A+ ++ SV GE FG +G +GAGK+T + I+G E PT
Sbjct: 1 MIELKNVSKVFGDTGGK--VTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT 58
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
G+ + G D+ + + ARR IG Q LL TV E++ L I GV + ++
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE 118
Query: 1470 DVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
+ V+E L+E L K P+ LSGG K+++ +A A+ +P +++ DE ++ +DP
Sbjct: 119 ERVLE-LLELVGLEDKADAYPA-QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ + ++ ++ G T ++L TH M + +C R+ +M G++
Sbjct: 177 QSILALLRDINRELGLT-IVLITHEMEVVKRICDRVAVMEKGEV 219
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 13/217 (5%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG-KNITADMDEI-- 524
A+N L ++ ++ L+G NGAGK+T + ++ G P G+ L G ++T + E
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK-LPEHRI 78
Query: 525 -RKGLGVCPQYDILFPELTVREHLEM--------FAVLKGVKEELLESVVAEMVDEVGLA 575
R G+G Q +F LTVRE+LE+ FA L + E++ +GL
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635
D+ + + LS G K+ L +G+ L D K+++LDEP +GM T +L+K +
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672
IL+ H M E+ D++ ++ GS+ GS +++
Sbjct: 199 ILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 9/208 (4%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 521
K G VN L + + +I ++G +G+GKSTT+ ML LI PT G + G+NI
Sbjct: 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM-KQ 60
Query: 522 DEI------RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA 575
+ RK +G+ Q LFP +T+ ++ + L G E+ + E++ VGL
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--G 633
+ + LSGGM++++ L AL + ++++DE S +DP +KK++
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 634 RIILLTTHSMDEAEELGDRIAIMANGSL 661
+ I+ TH +DEA +GDRI IM G +
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEI 208
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 19/223 (8%)
Query: 450 IQIRKLHKVY-ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
+++R + K + K A++ + LT+ ++ ALLG NGAGKST + +L G+ PP +G
Sbjct: 9 LELRGISKSFGGVK-----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG 63
Query: 509 DALVFGKNITAD--MDEIRKGLGVCPQYDILFPELTVREHL----EMFAVLKGVKEELLE 562
+ L+ GK + D + G+ Q L P L+V E++ E + + +
Sbjct: 64 EILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR 123
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
E++ +GL + +V LS ++ + + AL D++V+ILDEPT+ + +
Sbjct: 124 RRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV---KE 180
Query: 623 TWQLIKKIK----KGRIILLTTHSMDEAEELGDRIAIMANGSL 661
T +L I+ +G I+ +H +DE E+ DRI ++ +G +
Sbjct: 181 TERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 9/211 (4%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1432
A+ ++ V+ GE LG NGAGKTT L I G P G G+DI P + AR
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE-FDLLKH-AKKPSF 1490
I Y P+ + LTV+E+L L A + + +E++ E F LK + +
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGA--YARRDKEAQERDLEEVYELFPRLKERRNQRAG 135
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKTAVILT 1549
TLSGG ++ L++A A++ P +++LDEPS G+ P I + E I L G T ++L
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEGGMT-ILLV 193
Query: 1550 THSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ A + R ++ G++ G+ L
Sbjct: 194 EQNARFALEIADRGYVLENGRIVLSGTAAEL 224
|
Length = 237 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-30
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+I + NL Y + + ++ SV+ GE +G NGAGK+T L I G
Sbjct: 1 MMPMIEVENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54
Query: 1411 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQ---FDALLEYLTVQEHLEL--YARIKGVAE 1465
P+ G IFGK +R + R IGY PQ D +TV++ + L Y +
Sbjct: 55 KPSSGEIKIFGKPVR--KRRKRLRIGYVPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRR 111
Query: 1466 YRMDD--VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
D V E L + + LSGG K+++ +A A+ +P +++LDEP TG+D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
++ +++++ L ++GKT V++ TH + A R+ I + L G P+
Sbjct: 172 VAGQKEIYDLLKELR-QEGKT-VLMVTHDLGLVMAYFDRV-ICLNRHLIASGPPE 223
|
Length = 254 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 5e-30
Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 13/216 (6%)
Query: 461 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-- 518
K G VN L + E +I ++G +G+GKST + +L LI PT G+ LV GK+I
Sbjct: 36 KKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL 95
Query: 519 --ADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA 575
A++ E+R K + + Q L P TV E++ ++GV + E E ++ VGL
Sbjct: 96 SAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-----LIKKI 630
+ LSGGM++++ L AL D ++++DE S +DP +R Q L K+
Sbjct: 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL-IRTEMQDELLELQAKL 214
Query: 631 KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
KK I+ TH +DEA +GDRIAIM +G + G+
Sbjct: 215 KK--TIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 6e-30
Identities = 59/229 (25%), Positives = 120/229 (52%), Gaps = 19/229 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---- 505
++++ L + T G AV+ + L + +IL ++G +G+GKS ++GL+P
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 506 -TTGDALVFGKNITA----DMDEIR-KGLGVCPQY--DILFPELTVREHLE--MFAVLKG 555
G+ L GK++ + ++ +IR K + + Q L P +T+ + + + KG
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 556 VKEELLESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPT 612
+ ++ + E+++ VG+ D + LSGGM++++ + +AL + K++I DEPT
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPT 181
Query: 613 SGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+ +D L+K++++ G ++L TH + E+ DR+A+M G
Sbjct: 182 TALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 67/217 (30%), Positives = 127/217 (58%), Gaps = 13/217 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I+ LHK + + + LT+ + +++ ++G +G+GKST + + L P +G
Sbjct: 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT 56
Query: 510 ALVFGKNITA---DMDEIRKGLG-VCPQYDILFPELTVREHLEMFA--VLKGVKEELLES 563
++ G +T +++E+R+ +G V Q++ LFP LTV E++ A +KG+ + E
Sbjct: 57 IIIDGLKLTDDKKNINELRQKVGMVFQQFN-LFPHLTVLENI-TLAPIKVKGMSKAEAEE 114
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
E++++VGLADK + LSGG ++++++ AL + KV++ DEPTS +DP +
Sbjct: 115 RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV 174
Query: 624 WQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANG 659
++K + ++G +++ TH M A E+ DR+ M +G
Sbjct: 175 LDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 7e-30
Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 24/244 (9%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+I ++NL K YPGG + A+ + + GE +G +GAGK+T L ++G P
Sbjct: 2 MMIEVKNLSKTYPGGHQ-----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP 56
Query: 1413 TDGTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYLTVQEHLELYAR-----IKGV 1463
T G G I RR IG Q L+ L+V E++ L + +
Sbjct: 57 TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSL 116
Query: 1464 ------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
+ ++ L +L A + + TLSGG ++++++A A++ P I++ DE
Sbjct: 117 FGLFSKEDKAQ---ALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
P +DP + + + +++ ++ G T VI+ H ++ A+ RI + G++ G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGIT-VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232
Query: 1578 QHLK 1581
L
Sbjct: 233 SELT 236
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-30
Identities = 67/223 (30%), Positives = 124/223 (55%), Gaps = 10/223 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I+ L K + G+ + + L++ + +++ ++G +G+GKST + L GL P +G
Sbjct: 3 IEIKNLSKSF----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58
Query: 510 ALVFGKNITA--DMDEIRKGLGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESVV 565
V G+++ D+ ++R+ +G+ Q LFP LTV E++ A +K + +
Sbjct: 59 ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV-TLAPVKVKKLSKAEAREKA 117
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E++++VGLADK + LSGG ++++++ AL D KV++ DEPTS +DP +
Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177
Query: 626 LIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
++K + + G +++ TH M A E+ DR+ M G + G
Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220
|
Length = 240 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 60/215 (27%), Positives = 121/215 (56%), Gaps = 13/215 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ + K + GN A++ L L + + + + LLG +G GK+TT+ M+ GL PT+G
Sbjct: 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G+++T D+ + + + Q L+P +TV +++ L+ V ++ ++ V E+
Sbjct: 57 IYIGGRDVT-DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQL 626
+ + + ++ + LSGG +++++LG A++ + KV ++DEP S +D MR
Sbjct: 116 ELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE--- 172
Query: 627 IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+K++++ G + TH EA + DRIA+M +G
Sbjct: 173 LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 70/220 (31%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ + K Y G A++ + L + E + LLG +G GK+T + ++ G PT+G+
Sbjct: 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L+ GK+IT ++ ++ + Q LFP LTV E++ LK + + ++ VAE +
Sbjct: 57 ILLDGKDIT-NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-IK 628
D V L N LSGG ++++++ AL+ + KV++LDEP +D +R QL +K
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD-LKLRKDMQLELK 174
Query: 629 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+++K G + TH +EA + DRIA+M G ++ G+
Sbjct: 175 RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Query: 455 LHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG 514
+ + + + ++ L L LY +I+AL G NGAGK+T +L GLI ++G L+ G
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 515 KNITADMDEIRKGLGVCPQ--YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 572
K I A E RK +G Q LF + +VRE L + E E+V+ ++
Sbjct: 62 KPIKAK--ERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDL---- 114
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
L +LSGG K++L++ AL+ ++I DEPTSG+D +M +LI+++
Sbjct: 115 DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 633 -GRIILLTTHSMDEAEELGDRIAIMANGSLK 662
G+ +++ TH + ++ DR+ ++ANG++
Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----E 1409
I LR+L VY G K A+ ++ + GE +G +G GK+T L +++
Sbjct: 1 IELRDLN-VYYGDKH-----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIP 54
Query: 1410 EYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466
P +G + GKDI D RR +G Q ++ +++ R+ G+
Sbjct: 55 GAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLK 113
Query: 1467 R-MDDVVMEKLVEFDLLKHAKKPS--FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+D+ V E L + L K LSGG +++L +A A+ +P +++LDEP++ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
PI+ + E+I+ L +++ TH+M +A + R ++ G+L G + +
Sbjct: 174 PISTAKIEELIAELKKE---YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 29/230 (12%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+ YP A+ +++ +++AGE +G G+GK+T L +++G PT
Sbjct: 3 IEFRNVSFSYPN----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS 58
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G+ + G DIR DP RR IGY PQ D L Y T+++++ L A + DD +
Sbjct: 59 GSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGAPL-------ADDERI 110
Query: 1474 EKLVEF----DLL-KHAK-------KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
+ E D + KH + LSGG ++ +++A A++ DPPI++LDEP++
Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
MD ++ + RL G +I+ TH + L RI +M G++
Sbjct: 171 MDMNSEE---RLKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 6e-29
Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 20/232 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQ-----------------LTLYENQILALLGHNGAGK 492
I++ L K Y + SL+ T+ + +I+ +G NGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 493 STTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG-VCPQYDILFPELTVREHLEMFA 551
+TT+ +L GL+ PT+G+ V G + + +G V Q L+ +L V + + A
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120
Query: 552 VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEP 611
+ + + + E+ + + L + ++ VR LS G + + + AL+ + +++ LDEP
Sbjct: 121 AIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180
Query: 612 TSGMDPYSMRLTWQLIKKIKKGR--IILLTTHSMDEAEELGDRIAIMANGSL 661
T G+D + +K+ + R +LLT+H M + E L R+ ++ G L
Sbjct: 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 8e-29
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 521
G ++ L L++ +I+ +LG NGAGKST + L GL+ P++G+ L+ GK++ A +
Sbjct: 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-ASL 66
Query: 522 D--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 579
E+ + + PQ ++ +GLA +
Sbjct: 67 SPKELARKIAYVPQ----------------------------------ALELLGLAHLAD 92
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIIL 637
LSGG ++++ L AL + +++LDEPTS +D +L++++ + G+ ++
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 638 LTTHSMDEAEELGDRIAIMANGSLKCCG 665
+ H ++ A DR+ ++ +G + G
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 61/204 (29%), Positives = 110/204 (53%), Gaps = 21/204 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
+ + + + LA++G NGAGKST + ++GL+ PT+G VFGK + + RK
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKR 69
Query: 528 LGVCPQ---YDILFPELTVRE--------HLEMFAVLKGVKEELLESVVAEMVDEVGLAD 576
+G PQ D FP ++VR+ H +F L + V E ++ VGL++
Sbjct: 70 IGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK----VDEALERVGLSE 124
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRI 635
+ + LSGG ++++ L AL+ D +++LDEP +G+DP + ++L+++++ +G
Sbjct: 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 636 ILLTTHSMDEAEELGDRIAIMANG 659
IL+ TH + E DR+ ++
Sbjct: 185 ILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 69/222 (31%), Positives = 130/222 (58%), Gaps = 12/222 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++IR + K + G+ AV+ + L + + + + LLG +G GK+T + M+ G P++G+
Sbjct: 6 LEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESVVAE 567
L+ G++IT D+ ++ +G+ Q LFP +TV E++ F V K +K+ +++ V E
Sbjct: 62 ILLDGEDIT-DVPPEKRPIGMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEE 119
Query: 568 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL- 626
++ VGL + LSGG +++++L AL+ + KV++LDEP S +D +R +
Sbjct: 120 ALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD-AKLREQMRKE 178
Query: 627 IKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+K++ + G + TH +EA + DRIA+M +G ++ G+
Sbjct: 179 LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 23/236 (9%)
Query: 1355 IYLRNLRKVY------PGGKRS---------DAKVAVHSLTFSVQAGECFGFLGTNGAGK 1399
I + NL K Y PG S A+ ++F+++ GE GF+G NGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 1400 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC-PQFDALLEYLTVQEHLELYA 1458
TTTL ++SG PT G + G K R IG Q L L V + L A
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA 120
Query: 1459 RIKGV--AEYRMDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1515
I + A ++ +++L E DL + P LS G + + +A A++ +P I+ L
Sbjct: 121 AIYDLPPARFKKR---LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 1516 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
DEP+ G+D +A+ + + + R+ T V+LT+H M + +AL R+ ++ G+L
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYN-RERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-28
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 40/193 (20%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRK 526
+ + LT+ + +A++G +G+GKST + +L+ L PT+G+ L+ G ++ D++ +RK
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
+ PQ LF T+RE NI LS
Sbjct: 77 NIAYVPQDPFLFSG-TIRE---------------------------------NI----LS 98
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 646
GG ++++++ AL+ D ++ILDE TS +DP + L + ++ + KG+ +++ H +
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158
Query: 647 EELGDRIAIMANG 659
DRI ++ +G
Sbjct: 159 -RDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISG---EEYPTDGTAFIFGKDIRSDPKAARRLI 1435
++ V++G+ LG++G+GKTT L ISG T G G+ P ++ +
Sbjct: 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP--RKPDQFQKCV 83
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-----AKKPSF 1490
Y Q D LL LTV+E L A ++ + D + +K VE LL+
Sbjct: 84 AYVRQDDILLPGLTVRETLTYTAILRL--PRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 1491 T-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1549
+SGG +R++S+A+ ++ DP ++ILDEP++G+D + +S+L+ R VILT
Sbjct: 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILT 199
Query: 1550 TH 1551
H
Sbjct: 200 IH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 69/241 (28%), Positives = 124/241 (51%), Gaps = 13/241 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L N+ K + + A+ ++ + GE FG +G +GAGK+T L +I+ E PT
Sbjct: 1 MIELENVSKTFGQ-TGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT 59
Query: 1414 DGTAFIFGKDIRSDPKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
G+ F+ G+D+ + +A R+ IG Q LL TV E++ + GV + +
Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
V E L L A + LSGG K+++++A A+ +P I++ DE ++ +DP +
Sbjct: 120 QRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKT 1582
+ E++ ++ G T ++L TH M + +C R+ ++ G+L G+ P+H T
Sbjct: 180 ILELLKDINRELGLT-IVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAIT 238
Query: 1583 R 1583
+
Sbjct: 239 Q 239
|
Length = 339 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 36/217 (16%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--EEYPTDG 1415
RNL K + +++ + GE +G +GAGK+T L+ ++G G
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66
Query: 1416 TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1475
I G+ D ++ R++IGY PQ D L LTV+E L A+++G
Sbjct: 67 EVLINGRP--LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG------------- 111
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
LSGG ++++S+A+ ++ +P ++ LDEP++G+D + + ++
Sbjct: 112 ----------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR 155
Query: 1536 RLSTRQGKTAVILTTHSM-NEAQALCTRIGIMVGGQL 1571
RL+ G+T +I + H +E L ++ ++ G++
Sbjct: 156 RLA-DTGRT-IICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-28
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 21/229 (9%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+I L+N+ G K + L++ V GE + +G NGAGKTT LS+++GE P
Sbjct: 30 PLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83
Query: 1413 TDGTAFIFGK-----DIRSDPKAARRLIGYC-PQFDA-LLEYLTVQEH-LELYARIKGVA 1464
+ G + G+ + + R+ IG + TV++ L + G+
Sbjct: 84 SSGDVTLLGRRFGKGETIFE---LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 1465 EYRMDDVV---MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
+ + + L+E KH A +P +LS G +R++ +A A++ DP ++ILDEP+
Sbjct: 141 QEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
G+D IA+ + + L+ G A++ TH E T ++ G
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A + +NL K Y G + V ++ +V +GE G LG NGAGKTTT M+ G
Sbjct: 2 ATLTAKNLAKAYKGRR------VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR 55
Query: 1413 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMD 1469
G I +DI P ARR IGY PQ ++ L+V ++L +I ++ + +
Sbjct: 56 DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE 115
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
D E + EF + +LSGG +R++ +A A+ +P ++LDEP G+DPI+
Sbjct: 116 DRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ +I L R V++T H++ E A+C R I+ G L G+P +
Sbjct: 176 IKRIIEHL--RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 5e-28
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 18/227 (7%)
Query: 450 IQIRKLHKVYATKRGNC-------CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
+ +R L K Y +++G AV+ + L E + L L+G +G+GKST +L GL
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 503 IPPTTGDALVFGKNITADMDEIRKGLGVCPQ------YDILFPELTVREHL-EMFAVLKG 555
+PP++G + G+++ E+R+ Q Y L P +TV + L E + G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRR-RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG 399
Query: 556 VKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
+ VAE+++ VGL + + LSGG ++++++ AL + K++ILDEP S
Sbjct: 400 GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSA 459
Query: 615 MDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+D L+K +++ G L +H + + DR+A+M +G
Sbjct: 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 6e-28
Identities = 74/274 (27%), Positives = 133/274 (48%), Gaps = 14/274 (5%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RS 1426
K++ V V+ + V+ GE F +G +G+GK+T + +++ PT G + GKDI +
Sbjct: 36 KKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL 95
Query: 1427 DPKAARRL----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
R L I Q ALL + TV E++ ++GV + ++ +E L L
Sbjct: 96 SAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
+A K LSGG ++++ +A A+ DP I+++DE + +DP+ + M + + L +
Sbjct: 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN-----FLELEVKPTEV 1597
KT ++ TH ++EA + RI IM G++ +G+P+ + N F+ V + V
Sbjct: 216 KT-IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR-NVDRSRV 273
Query: 1598 SSVD--LEDLCQIIQERVFDIPSQRRSLLDDLEV 1629
+ + +I++ D P LL D
Sbjct: 274 LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGR 307
|
Length = 386 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-28
Identities = 55/218 (25%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K Y G A++ + L + + + L L G +GAGK+T + +L G + P+ G
Sbjct: 2 IEFHNVSKAYP---GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
+ G+++ + +R+ +GV Q L P+ TV E++ + ++G KE ++ V
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
+ +VGL K + LSGG ++++++ A++ +++ DEPT +DP L+ +
Sbjct: 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP---DLSER 175
Query: 626 LIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 659
++ +K+ G +++ TH + + + R+ I+ +G
Sbjct: 176 ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 3/223 (1%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
AV + + + +I+ LG NGAGKSTT+ ML GL+ PT+G V GK+ +E +
Sbjct: 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS 98
Query: 528 LG-VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
+G V Q L+ +L + LE+ ++ + ++ + + + + L + VR LS
Sbjct: 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLS 158
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMD 644
G + + L AL+ KV+ LDEPT G+D + + +K+ ++ +LLTTH D
Sbjct: 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218
Query: 645 EAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 687
+ L DR+ ++ G L G+ L+ Q+G ++
Sbjct: 219 DIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQA 261
|
Length = 325 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 63/240 (26%), Positives = 118/240 (49%), Gaps = 15/240 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +RNL VY GGK A A+++++ ++ GE G +G +G+GK+T +++G E P+
Sbjct: 4 LSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 1415 GTAFIFGKDIRSD--PKAARRLIGYCPQ--FDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
G+ + GK + KA R + Q + +L TV L R G+++ +
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
+ V + LSGG ++++++A A+I +P ++ILDEP++ +D + +
Sbjct: 122 AELLDQVGLP-PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 1583
++ L ++ + +H + + +C RI +M GQ+ IG P H TR
Sbjct: 181 LNLLLELK-KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTR 239
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 35/197 (17%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRK 526
+ ++ ++ A++G +GAGKST ++ L G +G+ L+ G+ + D RK
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL--DKRSFRK 82
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
+G PQ DIL P LTVRE L A L+G LS
Sbjct: 83 IIGYVPQDDILHPTLTVRETLMFAAKLRG-----------------------------LS 113
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTHSM-D 644
GG ++++S+ + L+ + ++ LDEPTSG+D S L++++ GR I+ + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173
Query: 645 EAEELGDRIAIMANGSL 661
E EL D++ +++ G +
Sbjct: 174 EIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 13/224 (5%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ NL K + K + ++ V+ G+ F LG G+GK+ L I+G P G
Sbjct: 3 VENLSKDWKEFKLKN-------VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK 55
Query: 1417 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME-- 1474
+ GKDI + P R I Y PQ AL ++TV +++ + + V + ++ V+E
Sbjct: 56 ILLNGKDITNLPPEKRD-ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA 114
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
+++ D L + +KP TLSGG ++++++A A++ +P I++LDEP + +D K + E +
Sbjct: 115 EMLGIDHLLN-RKPE-TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
++ ++ V+ TH EA AL ++ IM+ G+L +G P+
Sbjct: 173 KKIR-KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 12/199 (6%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430
+ ++F V+ GE +G NGAGK+T L I G PT G+ +FGK + +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE--- 66
Query: 1431 ARRLIGYCPQ-FDALLEY-LTVQE--HLELYARIKGVAEYRMDD--VVMEKLVEFDLLKH 1484
R+ IGY PQ ++ ++V++ + LY D V E L L +
Sbjct: 67 -RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL 125
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
A + LSGG ++++ +A A++ DP +++LDEP G+DP + ++E++ L R+G T
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR-REGMT 184
Query: 1545 AVILTTHSMNEAQALCTRI 1563
+++ TH + R+
Sbjct: 185 -ILVVTHDLGLVLEYFDRV 202
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 68/218 (31%), Positives = 124/218 (56%), Gaps = 6/218 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT+G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
+V G+++T +++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E++ VGL DK + LSGG K+++++ AL + KV++ DE TS +DP + + +
Sbjct: 122 TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
L+K+I + G ILL TH MD + + D +A+++NG L
Sbjct: 182 LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 50/200 (25%), Positives = 103/200 (51%), Gaps = 12/200 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+ + +Y+ + + ++GHNGAGKST + ++ G+ PT+G V GK + ++ G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-VAPLIEL---G 97
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
G PELT RE++ + ++ G+ + ++ V E+++ L D ++ V+ S
Sbjct: 98 AG-------FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS 150
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIILLTTHSMDEA 646
GM +L+ +A + +++LDE + D + + ++K + I+L +H +
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAI 210
Query: 647 EELGDRIAIMANGSLKCCGS 666
++ DR + +G ++ GS
Sbjct: 211 KQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 64/227 (28%), Positives = 122/227 (53%), Gaps = 21/227 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ L K Y A+ + L + + +++A++G +GAGKST + L GL+ PT+G+
Sbjct: 4 IEVKNLSKTYPGGHQ---ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 510 ALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVRE--------HLEMFAVLKGV- 556
L G IT ++ ++R+ +G+ Q L P L+V E + + L G+
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 557 -KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
KE+ +++ A ++ VG+ DK LSGG ++++++ AL+ K+++ DEP + +
Sbjct: 121 SKEDKAQALDA--LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 616 DPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGS 660
DP S + ++K I + G +++ H +D A++ DRI + G
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFL-GTNGAGKTTTLSMISGEEYP 1412
+I N+ K YPGG A+H ++ ++ GE F FL G +GAGKTT L ++ G P
Sbjct: 1 MIEFHNVSKAYPGGVA-----ALHDVSLHIRKGE-FLFLTGPSGAGKTTLLKLLYGALTP 54
Query: 1413 TDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
+ G I G+D+ RR IG Q LL TV E++ L ++G E +
Sbjct: 55 SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREI 114
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAK 1527
V L + L A LSGG ++++++A A++ PP+++ DEP+ +DP +++
Sbjct: 115 QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174
Query: 1528 RFMWEVISRLSTRQGKTAVILTTH 1551
R + +++ RL+ ++G T VI+ TH
Sbjct: 175 RIL-DLLKRLN-KRG-TTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-27
Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 27/235 (11%)
Query: 450 IQIRKLHKVY------ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 503
I+I L +Y K A++++ + + + + + L+GH G+GKST I L GL+
Sbjct: 3 IKIENLTHIYMEGTPFEKK-----ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL 57
Query: 504 PPTTGDALVFGKNIT---ADMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKE 558
PT+G ++ G +IT + +IRK +G+ QY LF E T+ + + + G+ E
Sbjct: 58 KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSE 116
Query: 559 ELLESVVAEMVDEVGL-----ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
E +E+ V ++ VGL DK LSGG KR++++ + + K++ILDEPT+
Sbjct: 117 EEIENRVKRAMNIVGLDYEDYKDKSPF---ELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 614 GMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
G+DP IK++ K I+L +HSM++ +L DRI +M G + G+
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-27
Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 20/221 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++R + K + A + + L++ + +I ALLG NGAGKST + +L GL P +G+
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 510 ALVFGK--NITADMDEIRKGLGVCPQYDILFPELTVREHL--------EMFAVLKGVKEE 559
V GK I + D IR G+G+ Q+ +L P LTV E++ + +
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 560 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+ E+ + GL + V LS G ++++ + AL ++++ILDEPT+ + P
Sbjct: 121 -----IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 620 MRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
+++++++ G+ I+ TH + E + DR+ ++ G
Sbjct: 176 ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 50/199 (25%), Positives = 102/199 (51%), Gaps = 12/199 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+ + + + + L+G NGAGKST + +L G+ PP +G V G+ +++ + G
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLGL---G 92
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
G PELT RE++ + L G+ + ++ + E+++ L D +++ V+ S
Sbjct: 93 GG-------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSS 145
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIILLTTHSMDEA 646
GMK +L+ IA + ++++DE + D + ++ +K+G+ ++L +H
Sbjct: 146 GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205
Query: 647 EELGDRIAIMANGSLKCCG 665
+ L DR ++ G ++ G
Sbjct: 206 KRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 59/182 (32%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 541
+LG G+GKS + + G I P +G L+ GK+IT ++ ++ + PQ LFP +
Sbjct: 28 FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNYALFPHM 86
Query: 542 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601
TV +++ + V ++ +E V E+ + +G+ +N LSGG ++++++ AL+
Sbjct: 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV 146
Query: 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+ K+++LDEP S +D + + +KKI+K G +L TH +EA L D++AIM NG
Sbjct: 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206
Query: 660 SL 661
L
Sbjct: 207 KL 208
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-26
Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 17/275 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + N++K + A A+ ++ +++GE LG +GAGK+T L +I+G E P
Sbjct: 3 IRINNVKKRFG------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA 56
Query: 1415 GTAFIFGKDIR--SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDD 1470
G + G+ + S+ R +G+ Q AL ++TV +++ +++ E +
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V E L L A + LSGG ++++++A A+ +P +++LDEP +D ++ +
Sbjct: 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 176
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ----HLKTRFG- 1585
+ +L R G + TH EA L R+ ++ G++ +G P H +RF
Sbjct: 177 RRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVA 235
Query: 1586 NFLELE-VKPTEVSSVDLEDLCQIIQERVFDIPSQ 1619
FL V P EV L+ I + +P
Sbjct: 236 RFLGEVNVLPGEVILGQLQVGAHDIGLPLQPLPDG 270
|
Length = 345 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 70/218 (32%), Positives = 127/218 (58%), Gaps = 6/218 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ + KV+ A+N++ L + +I ++G +GAGKST I + L PT+G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 510 ALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
LV G+++TA ++ + R+ +G+ Q+ L TV +++ + L G + +++ V
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E+++ VGL+DK + LSGG K+++++ AL + KV++ DE TS +DP + R +
Sbjct: 122 TELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
L+K I + G I+L TH MD + + DR+A++ G L
Sbjct: 182 LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
Length = 343 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 16/230 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I +RN+ K + VA+ ++ + +GE LG +G+GKTT L +I+G E P
Sbjct: 3 IEVRNVSKRFGDF------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS 56
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY----RMDD 1470
GT G+D +D R +G+ Q AL ++TV +++ R+K +E +
Sbjct: 57 GTILFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
Query: 1471 VVME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
V E KLV+ D L A + LSGG ++++++A A+ +P +++LDEP +D ++
Sbjct: 116 KVHELLKLVQLDWL--ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ + RL T V TH EA + R+ +M G++ +G+P
Sbjct: 174 ELRRWLRRLHDELHVTTV-FVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 22/233 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 504
+Q+ L Y K+ A+NS+ L Y N+I AL+G +G+GKST +I+ + L P
Sbjct: 6 LQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEV 61
Query: 505 PTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 560
TG + G NI D ++RK +G+ Q FP +++ E++ LKG+K+ ++
Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQV 120
Query: 561 LESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
L+ V A + DEV D+++ LSGG ++++ + L K+++LDEPTS
Sbjct: 121 LDEAVEKSLKGASIWDEV--KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
+DP S + + +K +LL T SM +A + DR +G L +
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-26
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I+YL L + G K A++ L+ V GE +G NGAGKTT + +I+G+ P
Sbjct: 2 ILYLEGLSVSFDGFK------ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55
Query: 1414 DGTAFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLE------------LYAR 1459
+G+ G D+ + + AR IG Q + E LTV E+LE L+ R
Sbjct: 56 EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115
Query: 1460 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1519
+ + R+++V L L A + + LS G K+ L + + ++ DP +++LDEP
Sbjct: 116 LSAEEKDRIEEV----LETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171
Query: 1520 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
GM E++ L+ GK +V++ H M +++ ++ ++ G + GS
Sbjct: 172 AGMTDEETEKTAELLKSLA---GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 11/195 (5%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1438
L+ + AGE G NGAGKTT +++G + G+ + GK I+ K R+ IGY
Sbjct: 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK--AKERRKSIGYV 76
Query: 1439 PQ-FDALLEYLTVQEHLELYARIKGVAEYRMD-DVVMEKLVEFDLLKHAKKPSFTLSGGN 1496
Q D L +V+E EL +K + + V++ L DL ++ +LSGG
Sbjct: 77 MQDVDYQLFTDSVRE--ELLLGLKELDAGNEQAETVLKDL---DLYALKERHPLSLSGGQ 131
Query: 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
K++L++A A++ ++I DEP++G+D + E+I L+ QGK AVI+ TH
Sbjct: 132 KQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA-AQGK-AVIVITHDYEFL 189
Query: 1557 QALCTRIGIMVGGQL 1571
+C R+ ++ G +
Sbjct: 190 AKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-26
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I +N+ YPG K + ++ +++ GE +G +G+GK+T L ++ PT
Sbjct: 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G I G D+R D ++ R+ I Y PQ D L +
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQ-DPFL----------------------FSGTIR 93
Query: 1474 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
E + LSGG ++++++A A++ DPPI+ILDE ++ +DP + + E
Sbjct: 94 ENI---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+ L +GKT VI+ H ++ + RI ++ G+
Sbjct: 139 LRAL--AKGKT-VIVIAHRLSTIR-DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-26
Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ L K Y + A+ + L++ + +AL+G +GAGKST + L GL+ PT+G
Sbjct: 1 IEVENLSKTYPNGKK---ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57
Query: 510 ALVFGKNITADMDE----IRKGLGVCPQYDILFPELTVRE--------HLEMFAVLKGV- 556
L+ G +I + +R+ +G+ Q L L+V E + L G+
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 557 -KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
KEE + ++ VGL DK LSGG ++++++ AL+ K+++ DEP + +
Sbjct: 118 PKEEKQRA--LAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 616 DPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANG 659
DP S R L+K+I ++G ++++ H +D A E DRI + +G
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-26
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 58/213 (27%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++R + K + G A++ + L++ ++ ALLG NGAGKST + +L GL P +G+
Sbjct: 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 510 ALVFGK--NITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 567
LV GK + + D R G+ + Q
Sbjct: 57 ILVDGKEVSFASPRDARRAGIAMVYQ---------------------------------- 82
Query: 568 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 627
LS G ++ + + AL +++++ILDEPT+ + P + +++I
Sbjct: 83 -----------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125
Query: 628 KKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
++++ G ++ +H +DE E+ DR+ ++ +G
Sbjct: 126 RRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 26/225 (11%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + NL K YP GK+ A+ ++ S+ GE +G +GAGK+T L ++G PT
Sbjct: 1 IEVENLSKTYPNGKK-----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55
Query: 1415 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHLELYARIK--------- 1461
G+ I G DI RR IG Q L+E L+V E++ L R+
Sbjct: 56 GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLF 114
Query: 1462 ---GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
E + + L LL A + + LSGG ++++++A A++ P +++ DEP
Sbjct: 115 GLFPKEEKQ---RALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
+DP + R + +++ R++ +G T VI++ H ++ A+ RI
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGIT-VIVSLHQVDLAREYADRI 215
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ LR + K + G K A+ ++ +V+ GE LG NGAGK+T + ++SG P
Sbjct: 7 PLLELRGISKSFGGVK------ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP 60
Query: 1413 TDGTAFIFGKDIR-SDPKAARRL-IGYCPQFDALLEYLTVQEHL----ELYARIKGVAEY 1466
G I GK + S P+ A I Q +L+ L+V E++ E R +
Sbjct: 61 DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRK 120
Query: 1467 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
M E L L LS ++ + +A A+ D ++ILDEP+ +
Sbjct: 121 AMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
++++I RL QG A+I +H ++E + RI ++ G++
Sbjct: 181 TERLFDLIRRLK-AQGV-AIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 493 STTISMLVGLIPPTTGDALVFGKNITADMDE--IRKGLGVCPQYDILFPELTVREHLEMF 550
ST + ++ GL+ PT+G L+ G++ T +RK +GV Q LFPELTVRE+L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 551 AVLKGVKEELLESVVAEMVDEVGLADKVNIV-VRALSGGMKRKLSLGIALIGDSKVVILD 609
G++++ ++ E ++ VGL D ++ V LSGG K+++++ AL+ K+++LD
Sbjct: 60 ----GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 610 EPTS 613
EPT+
Sbjct: 116 EPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
YPGG + L F+ + GE LG NGAGK+T L ++G P G I G+
Sbjct: 1 YPGGPE-----VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP 55
Query: 1424 I---RSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF 1479
+ R R+ +G Q D L V + + G++E ++ V E L
Sbjct: 56 LDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 1480 DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
++P+ LSGG K+++++A A+ P +++LDEP+ G+DP + M ++ RL
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL-- 173
Query: 1540 RQGKTAVILTTH 1551
R V+++TH
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 21/226 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML---VGLIPP- 505
I++R L+ Y K A+ + L + +N++ AL+G +G GKST + L LIP
Sbjct: 8 IEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 506 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 561
G+ L+ GKNI D+ E+R+ +G+ Q FP +++ +++ L G+K++ L
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKEL 122
Query: 562 ESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
+ +V A + DEV D+++ LSGG +++L + AL +V+++DEPTS +
Sbjct: 123 DEIVESSLKKAALWDEV--KDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 616 DPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
DP S +LI ++KK I++ TH+M +A + D A G L
Sbjct: 181 DPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 23/208 (11%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFL-GTNGAGKTTTLSMISGEEYP 1412
+I N+ K YPGG+ A+ ++F + GE F FL G +GAGK+T L +I GEE P
Sbjct: 1 MIRFENVSKAYPGGR-----EALRDVSFHIPKGE-FVFLTGPSGAGKSTLLKLIYGEERP 54
Query: 1413 TDGTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
T G + G D+ RR IG Q LL TV E++ L R+ G +
Sbjct: 55 TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREI 114
Query: 1469 DDVVMEKLVEFDL--LKHAKK--PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
V E L DL LKH + PS LSGG ++++++A A++ P +++ DEP+ +DP
Sbjct: 115 RRRVSEVL---DLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 1525 -IAKRFMWEVISRLSTRQGKTAVILTTH 1551
++ M + ++ R G T V++ TH
Sbjct: 171 DLSWEIM-RLFEEIN-RLG-TTVLMATH 195
|
Length = 223 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 59/220 (26%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ L K Y + + + + L++ + +I+A++G +G+GKST + +L GL PT+G+
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 510 ALVFGKNITA----DMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
L G++++ + ++R K LG Q+ L P+ T E++ M ++ + +
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
EM+++VGL ++N LSGG ++++++ AL+ +V+ DEPT +D + ++ +
Sbjct: 122 AYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 625 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLK 662
L+ ++ + L+ TH ++ A++L DR+ M +G L
Sbjct: 182 DLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 20/247 (8%)
Query: 1357 LRNLRKVYP-----GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
+RNL K Y + AV ++F ++ GE G +G +G+GK+T +++G
Sbjct: 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342
Query: 1412 PTDGTAFIFGKDIRSDPKAARRL-----IGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466
P+ G+ G+D+ RRL + + + +L +TV + L RI G
Sbjct: 343 PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402
Query: 1467 -RMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
V E L L + + LSGG ++++++A A+ +P ++ILDEP + +D
Sbjct: 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-------RCIGSP 1577
+ + ++ L G + +H + + + R+ +M G++ + +P
Sbjct: 463 SVQAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENP 521
Query: 1578 QHLKTRF 1584
QH TR
Sbjct: 522 QHPYTRK 528
|
Length = 539 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 11/223 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ R L Y G+ A+N++ N +A++G NGAGKST G++ PT+G
Sbjct: 4 IETRDLCYSY---SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS 60
Query: 510 ALVFGKNIT-ADMDEIRKGLGVC---PQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
L+ G+ IT ++ E+RK +G+ P I P TV + + + G+ EE + V
Sbjct: 61 VLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP--TVEQDIAFGPINLGLDEETVAHRV 118
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
+ + +GL + + V LSGG K+++++ + + +V++LDEPT+G+DP ++
Sbjct: 119 SSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ + + G ++ +TH +D E+ D I +M G + G+
Sbjct: 179 FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-25
Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 34/240 (14%)
Query: 1345 VLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLS 1404
L G ++ RN+ YPG A+ +++ +++ GE +G G+GK+T L
Sbjct: 459 RLQGEIE-----FRNVSFAYPG----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLK 509
Query: 1405 MISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL------- 1456
++ G PT+G+ + G DIR DP RR IGY PQ D L Y T+++++ L
Sbjct: 510 LLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGAPYADD 568
Query: 1457 -----YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
A + GV + V D+ + S LSGG ++ +++A A++ DPP
Sbjct: 569 EEILRAAELAGV-----TEFVRRHPDGLDMQIGERGRS--LSGGQRQAVALARALLRDPP 621
Query: 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
I++LDEP++ MD ++ + + R GKT ++L TH + L RI +M G++
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWL--AGKT-LVLVTHRTS-LLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-25
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG----EEYP 1412
+ NL + AV ++F V+ GE G +G +G+GK+T + G
Sbjct: 8 VENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1413 TDGTAFIFGKDIRSDPKAARRL-----IGYCPQ--FDALLEYLTVQEHLE--LYARIKGV 1463
T G + G+D+ + R I Q +L +T+ + + L KG
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1464 AEYRMDDVV-MEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
V + + V D + + P LSGG ++++ +A+A+ P ++I DEP+T
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581
+D + + +++ L G AV+ TH + L R+ +M G++ G + +
Sbjct: 185 LDVTTQAQILDLLKDLQRELG-MAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 1582 TRF 1584
+
Sbjct: 244 SNP 246
|
Length = 539 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-24
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 23/232 (9%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+ +R + K +PG VA ++ SV+ GE LG NGAGK+T + ++ G P
Sbjct: 4 ALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD 57
Query: 1414 DGTAFIFGKDIR-SDPKAARRL-IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
G + GK++R P+ A RL IG Q L+ LTV E++ L
Sbjct: 58 SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 1472 VMEKLVE------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
++ E + AK LS G ++++ + A+ ++ILDEP+ + P
Sbjct: 118 R-ARIKELSERYGLPVDPDAK--VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1526 -AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
A I R +GKT +I TH + E A+ R+ ++ G + +G+
Sbjct: 175 EADELF--EILRRLAAEGKT-IIFITHKLKEVMAIADRVTVLRRG--KVVGT 221
|
Length = 501 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 2e-24
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 9/201 (4%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1432
+ ++ V GE LG NG GKTT L + G G+ + G+DI P + AR
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK-PSFT 1491
I Y PQ + LTV+E+L ++ D + E F +LK
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYEL---FPVLKEMLGRRGGD 131
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKTAVILTT 1550
LSGG +++L++A A++ P +++LDEP+ G+ P I K + VI RL +G A++L
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD-IGRVIRRL-RAEGGMAILLVE 189
Query: 1551 HSMNEAQALCTRIGIMVGGQL 1571
++ A+ L R +M G++
Sbjct: 190 QYLDFARELADRYYVMERGRV 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-24
Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 18/253 (7%)
Query: 1339 QVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1398
+VE+ + V II +RN+ K Y R K AV +++ V+ GE FG +GT+GAG
Sbjct: 266 EVEKECEVE--VGEPIIKVRNVSKRYISVDRGVVK-AVDNVSLEVKEGEIFGIVGTSGAG 322
Query: 1399 KTTTLSMISGEEYPTDGTAFI-FGKD------IRSDPKA-ARRLIGYCPQFDALLEYLTV 1450
KTT +I+G PT G + G + D + A+R IG Q L + TV
Sbjct: 323 KTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382
Query: 1451 QEHLELYARIKGVAEY-RMDDVVMEKLVEFDLLKHA----KKPSFTLSGGNKRKLSVAIA 1505
++L ++ E RM V+ K+V FD K K P LS G + ++++A
Sbjct: 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD-ELSEGERHRVALAQV 441
Query: 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI 1565
+I +P IVILDEP+ MDPI K + I + +T +I+ +H M+ +C R +
Sbjct: 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV-SHDMDFVLDVCDRAAL 500
Query: 1566 MVGGQLRCIGSPQ 1578
M G++ IG P+
Sbjct: 501 MRDGKIVKIGDPE 513
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-MDEIRK 526
A+ ++ + E + +A+LGHNG+GKST +L GL+ P +G+ + G I+ + + EIRK
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83
Query: 527 GLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRAL 585
+G+ Q D F TV + + K V + ++ ++ ++ +VG+ D ++ + L
Sbjct: 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143
Query: 586 SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR--IILLTTHSM 643
SGG K+++++ L + +++I DE TS +DP R +++ ++K R ++ TH M
Sbjct: 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203
Query: 644 DEAEELGDRIAIMANGSL 661
DEA L D++ + + G L
Sbjct: 204 DEA-ILADKVIVFSEGKL 220
|
Length = 271 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 51/194 (26%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+ + LT+ +++ +LG +G GK+T ++++ G + P+ G + G+ I E
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE---- 75
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
GV Q + L P L V +++ L+G+++ + +M+ VGL + + LSG
Sbjct: 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSG 135
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDE 645
GM++++ + AL + ++++LDEP +D + +L+ + + G+ +LL TH ++E
Sbjct: 136 GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195
Query: 646 AEELGDRIAIMANG 659
A L R+ +++ G
Sbjct: 196 ALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR A A+ ++ SV+ GE LG +G GKTT L +I+G E T GT + G+DI
Sbjct: 12 KRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL 71
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLE--LYARIKGVAEYRMDDVVMEKLVEFDLLKHA 1485
P R G Q AL LTV +++ L R G AE + V E L L
Sbjct: 72 PPQKRDY-GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA--ERVAELLDLVGLPGSE 128
Query: 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK---RFMWEVISRLSTRQG 1542
+K LSGG ++++++A A+ P +++LDEP + +D A+ E I +L R G
Sbjct: 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD--ARVREHLRTE-IRQLQRRLG 185
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ----HLKTRF-------GNFLELE 1591
T I+ TH EA ++ RI +M G + +G+PQ H T F N+L
Sbjct: 186 VTT-IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEVNWLPGT 244
Query: 1592 V 1592
Sbjct: 245 R 245
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I N+ K YP G A+ + S+ AGE +G +GAGK+T L +I EE PT
Sbjct: 1 IEFINVTKTYPNGT-----AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS 55
Query: 1415 GTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
GT + G+D+ A RR IG Q LL V E++ + GV +
Sbjct: 56 GTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK 115
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V L L + LSGG ++++++A A++ P I+I DEP+ +DP
Sbjct: 116 RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP---DTT 172
Query: 1531 WEVISRL-STRQGKTAVILTTH 1551
WE+++ L + T V++ TH
Sbjct: 173 WEIMNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 24/228 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 505
I+I L+ Y K A+ ++ L + +NQ+ AL+G +G GKST +++ + L+P
Sbjct: 2 IEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 506 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPE-------LTVREH-LEMFAVL 553
G L G++I D+ E+R+ +G+ Q FP R H ++ L
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 554 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
+ EE L+ A + DEV D+++ LSGG +++L + AL + +V++LDEPTS
Sbjct: 118 DEIVEESLKK--AALWDEV--KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+DP + +LI+++KK I++ TH+M +A + DR A +G L
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 14/250 (5%)
Query: 1340 VERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1399
+ R + + ++ +RNL K + D + AV ++ ++ GE F LG +G GK
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSF------DGQHAVDDVSLTIYKGEIFALLGASGCGK 58
Query: 1400 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR 1459
+T L M++G E PT G + G D+ P +R I Q AL ++TV++++ +
Sbjct: 59 STLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMFQSYALFPHMTVEQNIAFGLK 117
Query: 1460 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1519
+ + + V E L + + AK+ LSGG ++++++A ++ P +++LDEP
Sbjct: 118 QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177
Query: 1520 TGMD-PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP- 1577
+D + R EV+ L R G T V + TH EA + RI IM G+ IG P
Sbjct: 178 GALDKKLRDRMQLEVVDILE-RVGVTCV-MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPE 235
Query: 1578 ---QHLKTRF 1584
+H TR+
Sbjct: 236 EIYEHPTTRY 245
|
Length = 377 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 26/226 (11%)
Query: 454 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVF 513
L K Y +R V + LT+ +I+ LLG NGAGK+TT M+VG++P G
Sbjct: 8 NLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG----- 58
Query: 514 GKNITADMDEI---------RKGLGVCPQYDILFPELTVREHLEMFAVL---KGVKEELL 561
NI D ++I R+G+G PQ +F L+V ++L AVL + E
Sbjct: 59 --NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQR 114
Query: 562 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
E E+++E + + + ++LSGG +R++ + AL + K ++LDEP +G+DP S+
Sbjct: 115 EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174
Query: 622 LTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
++I+ ++ G +L+T H++ E + +R I++ G L G+
Sbjct: 175 DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
Length = 241 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K Y A++ + +++ + + L+G +GAGKST + ++ PT+G
Sbjct: 1 IEFINVTKTYP---NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57
Query: 510 ALVFGKNITADMDE----IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
V G++++ +R+ +GV Q L P+ V E++ + GV + V
Sbjct: 58 IRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
++ VGL+ K + LSGG ++++++ A++ ++I DEPT +DP +
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 626 LIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
L+KKI K G +++ TH+ + + R+ + G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-24
Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 33/205 (16%)
Query: 483 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDEIRKGLGVCPQYDIL 537
A++GH G+GKST + L GL+ PT+G + + ITA + +RK +G+ Q
Sbjct: 37 AIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQ---- 92
Query: 538 FPELTVREHLEMFAVLK---------GVKEELLESVVAEMVDEVGLADKVNIVVRA---L 585
FPE + E V K GV EE + EM++ VGL +++ + R+ L
Sbjct: 93 FPEHQLFEE----TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL--LARSPFEL 146
Query: 586 SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS----MRLTWQLIKKIKKGRIILLTTH 641
SGG R++++ L + +V++LDEPT+G+DP M + ++L K +KG +L TH
Sbjct: 147 SGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK--EKGLTTVLVTH 204
Query: 642 SMDEAEELGDRIAIMANGSLKCCGS 666
SM++A D+I +M G++ G+
Sbjct: 205 SMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 7/200 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 524
A+ + + +++ALLG NGAGKST G++ PT+G+ L+ G+ I D + E+
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 525 RKGLGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582
RK +G+ Q D LF TV E + + G+ +E +E V E + VG+ N
Sbjct: 77 RKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP 135
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH 641
LSGG K+++++ L ++++LDEPTSG+DP +L+ + K+G I+++TH
Sbjct: 136 HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
Query: 642 SMDEAEELGDRIAIMANGSL 661
+D D++ +M++G +
Sbjct: 196 DVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
C+ I K + K + L ++ + G +GAGKST + + GL P G
Sbjct: 3 CVDIEKRLPDFTLK---------IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGG 52
Query: 509 -----DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES 563
++F ++ ++ +G+ Q LFP L VRE+L LK +
Sbjct: 53 TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF--GLKRKRNREDRI 110
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
V E++D +GL +N LSGG K++++L AL ++++LDEP S +D ++RL
Sbjct: 111 SVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR-ALRLQ 169
Query: 624 WQ-LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+K+IKK ++ TH + EAE L DRI +M +G L
Sbjct: 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-24
Identities = 60/210 (28%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
A++ L LT+ Q+ AL+G +GAGKST +++L+G + PT G+ V G ++ + RK
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV---- 582
+ Q LF T+RE++ + + + + + +D+ GL + V
Sbjct: 396 QISWVSQNPYLFAG-TIRENILLA------RPDASDEEIIAALDQAGLLEFVPKPDGLDT 448
Query: 583 ------RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 636
LSGG ++L+L AL+ + +++LDEPT+ +D + ++ Q ++++ K + +
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508
Query: 637 LLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
L+ TH +++A + DRI ++ NG L G+
Sbjct: 509 LVITHRLEDAADA-DRIVVLDNGRLVEQGT 537
|
Length = 559 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
++ + NL KVYP GK A+ ++ ++ GE +G +GAGK+T L I+ P+
Sbjct: 1 MLEVENLSKVYPNGK-----QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS 55
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR------IKGV 1463
G+ + G DI + RR IG Q L+E LTV E++ L+ R + +
Sbjct: 56 SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSL 114
Query: 1464 ------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
+ + L L A + + LSGG ++++++A A+ P +++ DE
Sbjct: 115 LGRFSEEDKER---ALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
P +DP + + + + R++ G T VI+ H ++ A+ RI + G++ G+P
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGIT-VIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
Query: 1578 QHL 1580
L
Sbjct: 231 SEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.8 bits (250), Expect = 6e-24
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 59/216 (27%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
LR + K + G K A+ ++ SV+ GE LG NGAGK+T + ++SG P G
Sbjct: 3 LRGITKRFGGVK------ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 1417 AFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK 1475
+ GK++ + P+ ARR G+A +V
Sbjct: 57 ILVDGKEVSFASPRDARRA---------------------------GIA------MV--- 80
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
+ LS G ++ + +A A+ + ++ILDEP+ + P +++VI
Sbjct: 81 --------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIR 126
Query: 1536 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
RL QG AVI +H ++E + R+ ++ G++
Sbjct: 127 RL-RAQGV-AVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-24
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 15/231 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I+ R+L+ YP D A+ + F + GE LG NGAGK+T +G PT
Sbjct: 1 ILETRDLKYSYP-----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT 55
Query: 1414 DGTAFIFGKDIRSDPKA---ARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD 1469
G I G+ I+ D K+ R+ +G Q D L TV+E + G+++ ++
Sbjct: 56 SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVE 115
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAK 1527
V E L + KP LSGG K+++++A +AM P I++LDEP++G+DP+
Sbjct: 116 KRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGA 173
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ +++ L+ ++G T +I++TH ++ ++ +M G++ G+P+
Sbjct: 174 SQIMKLLYDLN-KEGIT-IIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
Length = 275 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I+YL + V GG + A++ L+FSV GE +G NGAGKTT + +I+G+ P
Sbjct: 5 ILYLDGV-SVSFGGFK-----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ 58
Query: 1414 DGTAFIFG-KDIRSDPKA--ARRLIGYCPQFDALLEYLTVQEHLE------------LYA 1458
+G G D+ P+ AR IG Q + E LTV+E+LE L+A
Sbjct: 59 EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA 118
Query: 1459 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
R++ R+D++ L L + + LS G K+ L + + + DP +++LDEP
Sbjct: 119 RLRAEERRRIDEL----LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
GM E++ L+ GK ++++ H M + + ++ ++ G + GS
Sbjct: 175 VAGMTDAETEKTAELLKSLA---GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231
Query: 1579 HLK 1581
++
Sbjct: 232 EVQ 234
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-23
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 47/252 (18%)
Query: 441 KQQEVDGRCIQIRKLHKVY-ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+ EV I++R + K Y + RG AV+++ L + E +I ++G +GAGK+T ++
Sbjct: 271 CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKII 330
Query: 500 VGLIPPTTGDALVFGKNITADMDEIR--------KGLGVCPQYDILFPELTVREHL---- 547
G++ PT+G+ V + DM + + +G+ Q L+P TV ++L
Sbjct: 331 AGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390
Query: 548 -----EMFAVLK--------GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 594
+ A +K G EE E ++ + DE LS G + +++
Sbjct: 391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE-------------LSEGERHRVA 437
Query: 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI-----ILLTTHSMDEAEEL 649
L LI + ++VILDEPT MDP + + I K R ++ +H MD ++
Sbjct: 438 LAQVLIKEPRIVILDEPTGTMDPITKV---DVTHSILKAREEMEQTFIIVSHDMDFVLDV 494
Query: 650 GDRIAIMANGSL 661
DR A+M +G +
Sbjct: 495 CDRAALMRDGKI 506
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-23
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 465 NCCAVNSLQLTL--------YENQILALLGHNGAGKSTTISMLVGLIPPTT---GDALVF 513
C + L ++LA++G +GAGK+T ++ L P G L+
Sbjct: 29 GCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLN 88
Query: 514 GKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV- 572
G I A E+R Q D+ P LTVREHL A L+ + + + E VDEV
Sbjct: 89 GMPIDAK--EMRAISAYVQQDDLFIPTLTVREHLMFQAHLR-MPRRVTKKEKRERVDEVL 145
Query: 573 ---GLADKVNIV------VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
GL N V+ LSGG +++L+ L+ D ++ DEPTSG+D +
Sbjct: 146 QALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205
Query: 624 WQLIKKI-KKGRIILLTTHS-MDEAEELGDRIAIMANG 659
Q++K + +KG+ I+ T H E EL D+I +MA G
Sbjct: 206 VQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG 243
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 1e-23
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARR 1433
AV ++F V+AGE G G G G+T + G P G + GK + R P+ A R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1434 L-IGYCP---QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1489
I Y P + + L+ L+V E++ L S
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIAL--------------------------------S 102
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1549
LSGGN++K+ +A + DP ++ILDEP+ G+D AK ++ +I L+ GK AV+L
Sbjct: 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGK-AVLLI 160
Query: 1550 THSMNEAQALCTRIGIMVGGQL 1571
+ ++E LC RI +M G++
Sbjct: 161 SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 27/250 (10%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--EEYP--- 1412
+NL +P AV ++F ++ GE G +G +G+GK+ I G +
Sbjct: 5 KNLSVSFPTDAGV--VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 1413 TDGTAFIFGKDIRS-DPKAARRL----IGYCPQ--FDALLEYLTVQEHLELYARI--KGV 1463
G GKD+ S K R++ I Q +L +T+ + + R+ KG+
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL 122
Query: 1464 AEYRMDDVVME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
++ + +E +LV D + K LSGG ++++ +A+A+ +P ++I DEP+T
Sbjct: 123 SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTT 182
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS---- 1576
+D + + +++ L +G TA+IL TH + + R+ +M G++ G
Sbjct: 183 ALDVTVQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241
Query: 1577 ---PQHLKTR 1583
P+H TR
Sbjct: 242 FKNPKHPYTR 251
|
Length = 316 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 20/206 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
A++++ LT+ + +A++G G+GKST + +L GL PT+G L+ G +I D ++R+
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLADKVNI 580
+G PQ LF T+R+++ + A L E +L + V + GL ++
Sbjct: 79 NIGYVPQDVTLFYG-TLRDNITLGAPL-ADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK---GRIIL 637
R LSGG ++ ++L AL+ D +++LDEPTS MD M +L +++++ + ++
Sbjct: 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD---MNSEERLKERLRQLLGDKTLI 193
Query: 638 LTTH--SMDEAEELGDRIAIMANGSL 661
+ TH S+ +L DRI +M +G +
Sbjct: 194 IITHRPSLL---DLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 47/246 (19%)
Query: 1355 IYLRNLRKVYP----------------GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1398
I L N+ K YP A+ ++F V GE G +G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1399 KTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEY-------LTVQ 1451
K+T L +++G P GT + G+ +LL LT +
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGRVS------------------SLLGLGGGFNPELTGR 102
Query: 1452 EHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510
E++ L R+ G++ +D+ +++++EF +L P T S G K +L+ AIA +P
Sbjct: 103 ENIYLNGRLLGLSRKEIDE-KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP 161
Query: 1511 PIVILDEP-STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
I+++DE + G D + + L +QGKT VIL +H + + LC R ++ G
Sbjct: 162 DILLIDEVLAVG-DAAFQEKCQRRLRELL-KQGKT-VILVSHDPSSIKRLCDRALVLEKG 218
Query: 1570 QLRCIG 1575
++R G
Sbjct: 219 KIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 11/193 (5%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCP 532
+ I ++G +GAGKST I ++ LI PT G L+ G +I T D+ ++R+ +G+
Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83
Query: 533 QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM-VDEVGL-ADKVNIVVRALSGGMK 590
Q LF E TV++++E +LKG K +V E + VGL + V+ LSGG
Sbjct: 84 QQPHLF-EGTVKDNIEYGPMLKGEK-----NVDVEYYLSIVGLNKEYATRDVKNLSGGEA 137
Query: 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEE 648
+++S+ L + +V++LDEPTS +DP S + +LI K+K ++ TH+M++A+
Sbjct: 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197
Query: 649 LGDRIAIMANGSL 661
+GD A + G L
Sbjct: 198 IGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD 522
RG + L TL + L L G NG+GK+T + ++ GL+PP G + G +I
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD- 70
Query: 523 EIRKGLGVCPQY----DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 578
+ Y + + P LTV E+LE +A G + E +A ++ VGLA
Sbjct: 71 -----VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLA 121
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIIL 637
++ LS G KR+++L L+ + + ILDEPT+ +D ++ L +LI+ + +G I++
Sbjct: 122 HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181
Query: 638 LTTHS---MDEAEEL 649
TH + A EL
Sbjct: 182 AATHIPLGLPGAREL 196
|
Length = 207 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 67/214 (31%), Positives = 120/214 (56%), Gaps = 16/214 (7%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNI---TA 519
A+ ++ L++ EN++ A++G +G GKST T+++++ ++P TG+ G NI
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAEMVDEVGLADK 577
D+ E+RK +G+ Q FP+ ++ +++ + G K ++L E V + D V L D+
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD-VALWDE 144
Query: 578 VNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 633
V + LSGG +++L + AL + V+++DEPTS +DP S R +LI K+K+
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204
Query: 634 RIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
I++ TH+M +A + D+ A G L C +
Sbjct: 205 YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238
|
Length = 259 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 1360 LRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1419
L+ + GG++ A+ ++F + GE G +G NGAGK+T L +I+G PT G +
Sbjct: 27 LKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86
Query: 1420 FGKDIRSDPKAARRLIGYCPQFDALLEY-LTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1478
GK + LI A + LT +E++ L I G+ +D+ +++++E
Sbjct: 87 TGK-VAP-------LIE----LGAGFDPELTGRENIYLRGLILGLTRKEIDE-KVDEIIE 133
Query: 1479 F-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP-STGMDPIAKRFMWEVISR 1536
F +L +P T S G +L+ ++A +P I++LDE + G D F + + R
Sbjct: 134 FAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG-DA---AFQEKCLER 189
Query: 1537 LST--RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
L+ + KT ++L +H + + C R + GQ+R GSP+
Sbjct: 190 LNELVEKNKT-IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPE 232
|
Length = 249 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 3e-23
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 1400 TTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLELY 1457
+T L +I+G PT GT + G+D K R+ IG Q L LTV+E+L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL-FF 59
Query: 1458 ARIKGVAEYRMDDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1516
A+ R ++ L L ++P TLSGG K+++++A A++ P +++LD
Sbjct: 60 GLRDKEADARAEEA----LERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 1517 EPST 1520
EP+
Sbjct: 116 EPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-23
Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--- 518
K G V L + E +I ++G +G+GKST + +L LI PT G L+ G +I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 519 -ADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD 576
A++ E+R K + + Q L P +TV ++ L G+ E + + +VGL +
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN 156
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLIK-KIKKGR 634
+ LSGGM++++ L AL + ++++DE S +DP + +L+K + K R
Sbjct: 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216
Query: 635 IILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
I+ +H +DEA +GDRIAIM NG + G+
Sbjct: 217 TIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
Length = 400 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-23
Identities = 65/192 (33%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
+ LT+ + + ++L+GH+G GKST ++++ GL PT+G ++ GK IT + V
Sbjct: 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM----VV 59
Query: 532 PQYDILFPELTVREH--LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGM 589
Q L P LTVRE+ L + VL + + ++V E + VGL + + LSGGM
Sbjct: 60 FQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGM 119
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTWQLIKKIKKGRI-ILLTTHSMDEAE 647
K+++++ AL KV++LDEP +D + L +L++ ++ R+ +L+ TH +DEA
Sbjct: 120 KQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL 179
Query: 648 ELGDRIAIMANG 659
L DR+ ++ NG
Sbjct: 180 LLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 22/228 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGL--IP 504
I+ L Y G+ + + L + +N + AL+G +G GKST T + L+ L
Sbjct: 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA 60
Query: 505 PTTGDALVFGKNI-TADMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV---KE 558
G+ +FG+NI + D+D E+R+ +G+ QY FP LT+ +++ + L G+ K+
Sbjct: 61 RVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKK 120
Query: 559 ELLESV-----VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
EL E V A + DEV D++N LSGG +++L + AL K++++DEPT+
Sbjct: 121 ELDERVEWALKKAALWDEV--KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+DP +L+ ++KK I+L THS +A + D +A + G L
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
Length = 253 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-23
Identities = 65/245 (26%), Positives = 122/245 (49%), Gaps = 23/245 (9%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L NL YP GK A+ L +++AG+ +G +GAGK+T L+++ G PT
Sbjct: 321 ISLENLSFRYPDGKP-----ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ 375
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELY------ARIKGVAE-- 1465
G + G D+R P+A R+ I + Q + L T++E++ L I +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 1466 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
++ V ++ + + LSGG ++L++A A++ +++LDEP+ +D
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGA----GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585
++ + + + L+ + KT V++ TH + +A A RI ++ G+L G+ + L + G
Sbjct: 491 TEQIILQALQELA--KQKT-VLVITHRLEDA-ADADRIVVLDNGRLVEQGTHEELSEKQG 546
Query: 1586 NFLEL 1590
+ L
Sbjct: 547 LYANL 551
|
Length = 559 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 527
++ + L L ++LA+LG NGAGKST + L G + P +G+ + G + + +E+ +
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 528 LGVCPQYDIL-FPELTVREHLEMFAV--LKGVKEELLESVVAEMVDEVGLADKVNIVVRA 584
V PQ L FP TV+E ++M + G + E E + A+ + L+ R
Sbjct: 77 RAVLPQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 585 LSGGMKRKLSLGIAL------IGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIIL 637
LSGG ++++ L L + + + LDEPTS +D T +L +++ ++G +L
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195
Query: 638 LTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
H ++ A + DRI ++ G + GS
Sbjct: 196 AVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-23
Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 28/217 (12%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 522
A+ + LT+ + A +GH G+GKST + +L GL PT G V IT+ D+
Sbjct: 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 523 EIRKGLGVCPQYDILFPELTVREHLEMFAVLK---------GVKEELLESVVAEMVDEVG 573
+IRK +G+ Q FPE + E VLK GV +E E++ E + VG
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEE----TVLKDVAFGPQNFGVSQEEAEALAREKLALVG 133
Query: 574 LADKVNIVVRA---LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
+++ ++ + LSGG R++++ L + K+++LDEPT+G+DP + L KK+
Sbjct: 134 ISE--SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191
Query: 631 -KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ G I+L TH MD+ D + ++ G L G
Sbjct: 192 HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 8e-23
Identities = 60/205 (29%), Positives = 110/205 (53%), Gaps = 13/205 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+N L L + E + ++G NGAGKST ++ + G + PT+G L+ G ++T R
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 528 LGVCPQYDIL---FPELTVREHL-------EMFAVLKGVKEELLESVVAEMVD-EVGLAD 576
L D L PELT+ E+L + + + E S + +GL +
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRI 635
+++ + LSGG ++ LSL +A + K+++LDE T+ +DP + +L KI ++ ++
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 636 -ILLTTHSMDEAEELGDRIAIMANG 659
L+ TH+M++A + G+R+ ++ +G
Sbjct: 201 TTLMVTHNMEDALDYGNRLIMLHSG 225
|
Length = 263 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 46/218 (21%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ + N+ YPG + + +++FS++ GE +G +G+GK+T +I G PT
Sbjct: 1 LEVENVSFRYPGAEP----PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS 56
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G + G DI DP +GY PQ D L +
Sbjct: 57 GRVRLDGADISQWDPNELGDHVGYLPQDDELF-----------------------SGSIA 93
Query: 1474 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
E + LSGG +++L +A A+ G+P I++LDEP++ +D +R + +
Sbjct: 94 ENI---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
I+ L G T I+ H E A RI ++ G++
Sbjct: 139 IAALKAA-GAT-RIVIAHRP-ETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 15/219 (6%)
Query: 461 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN---- 516
+ G V++ L + E +I L+G +G+GKST + + GL P + G LV +
Sbjct: 32 DRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVD 91
Query: 517 -ITADMDEIR----KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE 571
D +R + + Q L P TV E++ ++G+ + V E ++
Sbjct: 92 VANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLEL 151
Query: 572 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLI--- 627
VGLA + LSGGM++++ L A ++ ++++DEP S +DP +L +L+
Sbjct: 152 VGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ 211
Query: 628 KKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
K+KK I+ +H +DEA ++G+RIAIM G + G+
Sbjct: 212 SKLKK--TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 62/222 (27%), Positives = 120/222 (54%), Gaps = 13/222 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I + K + G+ A++ + L + ++ALLG +G+GKST + ++ GL P +G
Sbjct: 1 IEIANISKRF----GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G++ T + + +G Q+ LF LTVR+++ ++ + +++ V E++
Sbjct: 57 IRLNGQDAT-RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY---SMRLTW-- 624
+ V L + LSGG +++++L AL + +V++LDEP +D +R +W
Sbjct: 116 ELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR-SWLR 174
Query: 625 QLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+L ++ + TH +EA E+ DRI +M+NG ++ GS
Sbjct: 175 KLHDEVHVTTV--FVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 2e-22
Identities = 56/215 (26%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
L+N+ K + KV + L +++ G+ + +G +G+GK+T L++I E G
Sbjct: 1 LKNISKKFGD------KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ 54
Query: 1417 AFIFGKDIRSDPKAA-----RRLIGYCPQFDALLEYLTVQEHLEL---YARIKGVAEYRM 1468
++ G++ R +GY Q AL+E TV+E+L+L Y ++ +
Sbjct: 55 VYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREK 114
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
+EK L K+ + LSGG ++++++A A++ PP+++ DEP+ +DP +
Sbjct: 115 KKEALEK---VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
+ +++ L+ +GKT +I+ TH E R+
Sbjct: 172 EVLDLLLELN-DEGKT-IIIVTHDP-EVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-22
Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 9/223 (4%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L N+ KV+ G ++ A+++++ V AG+ +G +G +GAGK+T + ++ E PT
Sbjct: 1 MIKLSNITKVFHQGTKTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
G+ + G+D+ S+ ARR IG Q LL TV ++ L + + +
Sbjct: 59 SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK 118
Query: 1470 DVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
V E L L KH PS LSGG K+++++A A+ +P +++ DE ++ +DP +
Sbjct: 119 RKVTELLALVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 178 SILELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVISNGEL 219
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 9/209 (4%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
Y G RS A+ ++ ++ +GE LG +G GKTT L++I+G P+ G+ + G+
Sbjct: 13 YEGKPRS----ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR 68
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
I P A R G Q +ALL +L V +++ +++G+ + + ++ + L L
Sbjct: 69 I-EGPGAER---GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG 124
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
K + LSGG ++++ +A A+ +P +++LDEP +D + + M E++ L GK
Sbjct: 125 AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK 184
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
V+L TH + EA L TR+ ++ G R
Sbjct: 185 -QVLLITHDIEEALFLATRLVVLSPGPGR 212
|
Length = 259 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 3e-22
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 1381 FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQ 1440
S GE G LG NGAGKTT L I G P GT + G P R IGY PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA----SPGKGWRHIGYVPQ 56
Query: 1441 -FDALLEYLTVQEHLELYARIKGVAEYR---MDD--VVMEKLVEFDLLKHAKKPSFTLSG 1494
+ ++ H + R + R + D V + L L + A +P LSG
Sbjct: 57 RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116
Query: 1495 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554
G ++++ VA A+ P +++LDEP TG+D + + E+ L+ TA+++TTH +
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLA 174
Query: 1555 EAQALCTRIGIMVGGQLRCIGSPQHLK 1581
+A A C R+ +++ G++ G+PQ L+
Sbjct: 175 QAMATCDRV-VLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 3e-22
Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 12/201 (5%)
Query: 479 NQILALLGHNGAGKSTTISMLVGLIP------PTTGDALVFGKNI-TADMDEIRKGLGVC 531
N I ++G +G+GKST + +L LI G L FGK+I D ++RK +G+
Sbjct: 36 NSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMV 95
Query: 532 PQYDILFPELTVREHLEMFAVLKGVKEEL-LESVVAEMVDEVGL----ADKVNIVVRALS 586
Q FP L++ +++ G+KE+ ++ +V E + +VGL D++N LS
Sbjct: 96 FQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLS 155
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 646
GG +++L++ AL KV+++DEPTS +D + + +LI ++K I++ +H+ +
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215
Query: 647 EELGDRIAIMANGSLKCCGSS 667
+ D +A + NG L GSS
Sbjct: 216 ARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 4e-22
Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 21/236 (8%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+I ++NL K + G K + ++ SV+ GE +G +G+GK+T L ++G E P
Sbjct: 1 MMIEIKNLSKSF-GDKE-----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP 54
Query: 1413 TDGTAFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYA--RIKGVAEYRM 1468
G+ + G+D+ + D RR +G Q L +LTV E++ A ++K +++
Sbjct: 55 DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV-TLAPVKVKKLSKAEA 113
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA----MIGDPPIVILDEPSTGMDP 1524
+ +E L + L A LSGG +++ VAIA M DP +++ DEP++ +DP
Sbjct: 114 REKALELLEKVGLADKADAYPAQLSGGQQQR--VAIARALAM--DPKVMLFDEPTSALDP 169
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ +V+ L+ +G T +I+ TH M A+ + R+ M G++ G P+
Sbjct: 170 ELVGEVLDVMKDLA-EEGMT-MIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 4e-22
Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 39/339 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ I + K + G A+ + L++ + + + LLG +G GK+T + ++ GL T G
Sbjct: 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
G++IT + R G+ Q LFP LTV +++ +G+ + VAE++
Sbjct: 61 IYQGGRDITRLPPQKR-DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL 119
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP-YSMRLTWQLIK 628
D VGL LSGG +++++L AL +++LDEP S +D L + I+
Sbjct: 120 DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IR 178
Query: 629 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL------------------ 668
++++ G ++ TH +EA + DRI +M +G ++ G+
Sbjct: 179 QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEV 238
Query: 669 -FLK------HQYGVG-YTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLA 720
+L + VG TL A+ + R P + VS G L
Sbjct: 239 NWLPGTRGGGSRARVGGLTLACAPGLAQPGASVRLAVR--PEDIRVSPAGNAANLLLARV 296
Query: 721 SSSSFESMFREIE-SCIRKSVSKVEAD-ATEDTDYLGIE 757
F F + + AD + + + LGI
Sbjct: 297 EDMEFLGAFYRLRLRLEGLPGQALVADVSASEVERLGIR 335
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 4e-22
Identities = 54/192 (28%), Positives = 113/192 (58%), Gaps = 5/192 (2%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ 533
L + + +I+A++G +GAGKST ++++ G I P +G V ++ T + ++ + + Q
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG-LAPYQRPVSMLFQ 77
Query: 534 YDILFPELTVREHLEMFAVLKGVKEELLE-SVVAEMVDEVGLADKVNIVVRALSGGMKRK 592
+ LF LTVR+++ + + G+K + V + +VG+AD ++ + LSGG +++
Sbjct: 78 ENNLFAHLTVRQNIGL-GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136
Query: 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELG 650
++L L+ + +++LDEP S +DP L+K++ ++ R +L+ TH + +A +
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196
Query: 651 DRIAIMANGSLK 662
+IA+++ G +K
Sbjct: 197 SQIAVVSQGKIK 208
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 4e-22
Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISM---LVGLIPPT--TGDALVFGKNIT 518
G+ A+ + + + E ++A +G +G GKST + + + LIP T G+ + G+NI
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73
Query: 519 A---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGL 574
+DE+RK +G+ Q FP+ ++ E++ + GVK + V E + L
Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 575 ADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
D+V ++ ALSGG +++L + A+ V+++DEP S +DP S +LI ++
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 631 KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
KK I++ TH+M +A + D+ A G +
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 5e-22
Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L KVY A+ ++ L + + +A++G +GAGKST + + L+ P++G
Sbjct: 2 LEVENLSKVYP---NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS 58
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-----LKGV---- 556
L+ G +IT + ++R+ +G+ Q+ L LTV E++ + + +
Sbjct: 59 ILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF 118
Query: 557 ----KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPT 612
KE L ++ + VGLADK LSGG ++++++ AL +++ DEP
Sbjct: 119 SEEDKERALSAL-----ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 613 SGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ +DP + + +K+I + G +++ H +D A++ DRI + G
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-22
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 10/208 (4%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK--NITADMDEIR 525
A+ S+ LT+Y +I ALLG NGAGKST + +L G+ PT G + N +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79
Query: 526 KGLGVCPQYDILFPELTVREHL-------EMFAVLKGVKEELLESVVAEMVDEVGLADKV 578
G+G+ Q + ELTV E+L + + + + A M+ VGL +
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIIL 637
+ V LS K+ L + L+ D+KV+I+DEPTS + + + ++ +++K G I+
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 638 LTTHSMDEAEELGDRIAIMANGSLKCCG 665
+H + E + DR +M +GS C G
Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-22
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 16/202 (7%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
A++++ LT+ + +A++G G+GKST + +L+GL PT G L+ G +I D ++R+
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLADKVNI 580
+G PQ LF T+R+++ + A EE+L + V E GL ++
Sbjct: 540 NIGYVPQDPRLFYG-TLRDNIALGAPYAD-DEEILRAAELAGVTEFVRRHPDGLDMQIGE 597
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK---GRIIL 637
R+LSGG ++ ++L AL+ D +++LDEPTS MD R + ++K+ G+ ++
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD---NRSEERFKDRLKRWLAGKTLV 654
Query: 638 LTTHSMDEAEELGDRIAIMANG 659
L TH +L DRI +M NG
Sbjct: 655 LVTHRT-SLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 8e-22
Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 1392 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQ 1451
LG +G GKTT L +++G E P G+ + G+D+ + P R I Q AL ++TV+
Sbjct: 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVE 60
Query: 1452 EHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
E++ +++ V + V+E L L + A + LSGG ++++++A A++ P
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
I++LDEP + +D + M + + + G T + TH EA + RI IM G++
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT-FVFVTHDQEEAMTMSDRIAIMRKGKI 179
Query: 1572 RCIGSPQHL 1580
IG+P+ +
Sbjct: 180 AQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 9e-22
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 29/239 (12%)
Query: 1358 RNLRKVYPGGKRS---DAKVAVHSLT---------FSVQAGECFGFLGTNGAGKTTTLSM 1405
R L ++P + + V +L+ F+V+AGE G G GAG+T
Sbjct: 245 RELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARA 304
Query: 1406 ISGEEYPTDGTAFIFGK--DIRSDPKAARRLIGYCP---QFDALLEYLTVQEHLEL---- 1456
+ G + G + GK IRS A + I Y P + + L+ +++ E++ L
Sbjct: 305 LFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLR 364
Query: 1457 -YARIKGVAEYRMDDVVMEKLVEFDL-LK--HAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512
++R + + + E+ + L +K ++P TLSGGN++K+ +A + DP +
Sbjct: 365 RFSRRGLIDRRKERALA-ERYIR-RLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ILDEP+ G+D AK ++ +I L+ +GK A+++ + + E L RI +M G++
Sbjct: 423 LILDEPTRGIDVGAKAEIYRLIRELA-AEGK-AILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-22
Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 10/226 (4%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
++ LR + K + D K + +L ++ GE LG +G GKTT L +I+G E P
Sbjct: 14 LVELRGISKSF------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD 67
Query: 1414 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G + G+DI P A R + Q AL ++TV E++ R++ + VM
Sbjct: 68 SGRIMLDGQDITHVP-AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM 126
Query: 1474 EKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
E L L + A +KP LSGG ++++++A A++ P +++LDE + +D ++ M
Sbjct: 127 EALRMVQLEEFAQRKPH-QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 185
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ L + G T + TH EA + RI +M G++ G+P+
Sbjct: 186 ELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-21
Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 23/224 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE---- 523
A++ + + + A++G G+GKST I + L+ PTTG V IT +
Sbjct: 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81
Query: 524 -IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-----ELLESVVAEMVDEVGLADK 577
+RK +G+ Q FPE + E ++ G K + +++ ++ ++G +
Sbjct: 82 PVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR- 136
Query: 578 VNIVVRA---LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KK 632
+++ ++ +SGG RK+++ L + +++LDEPT+G+DP S R +L+K + +
Sbjct: 137 -DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSL--KCCGSSLFLKHQY 674
+ I+L +H M+E D + +M GS+ + LF +
Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKK 239
|
Length = 286 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 1e-21
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGKDIRS 1426
A + L+ ++AGE +G +G GKTT L I+G G I +D+
Sbjct: 14 AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH 73
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
P R L Q AL +L V++++ R + + + + + V + L L A
Sbjct: 74 APPHKRGL-ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA 132
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
LSGG ++++++A A+ +P +++LDEP + +D + M E I+ L + +
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ TH ++A L + GIM G+L G PQ L
Sbjct: 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 1e-21
Identities = 66/225 (29%), Positives = 122/225 (54%), Gaps = 18/225 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 504
I+I Y K+ AV ++ + +++NQI A++G +G GK+T +I+ + IP
Sbjct: 4 IEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGF 59
Query: 505 PTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EEL 560
G G++I D+ E RK +G+ Q FP +++ +++ + GVK +
Sbjct: 60 RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHK 118
Query: 561 LESVVAEMVDEVGLADKV----NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
L+ +V E + + L D+V N LSGG +++L + AL + +V++LDEPTS +D
Sbjct: 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 617 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
P + + +L++++ + I++ TH++ +A + D IA M G L
Sbjct: 179 PIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 11/201 (5%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
LT+ +I+A+LG +GAGKST ++++ G P +G+ L+ G + TA + + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA-SPPAERPVSML 76
Query: 532 PQYDILFPELTVREHLEM----FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
Q + LF LTV +++ + L + E +E+ A+ VGLA + + LSG
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ----VGLAGFLKRLPGELSG 132
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDE 645
G +++++L L+ + +++LDEP S +DP L+ ++ ++ +L+ TH ++
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192
Query: 646 AEELGDRIAIMANGSLKCCGS 666
A + DR+ + NG + GS
Sbjct: 193 AARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-21
Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 20/235 (8%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + NL +Y G K A+ ++ ++ GE G +G G+GK+T + ++G PT
Sbjct: 3 IKIENLTHIYMEGT-PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1415 GTAFIFGKDIRSDPKAA----RRLIGYCPQFDALLEYL----TVQEHLELYARIKGVAEY 1466
G I G DI +D K R+ +G Q+ EY T+++ + G++E
Sbjct: 62 GKIIIDGVDI-TDKKVKLSDIRKKVGLVFQYP---EYQLFEETIEKDIAFGPINLGLSEE 117
Query: 1467 RMDDVVME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGM 1522
+++ V +V D + K F LSGG KR++++A +AM +P I+ILDEP+ G+
Sbjct: 118 EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGL 175
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
DP + + I L T +IL +HSM + L RI +M G+ G+P
Sbjct: 176 DPKGRDEILNKIKELHKEYNMT-IILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 10/233 (4%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+ +I + N+ YP + A+ +++F + GE LG NG+GK+T +++G
Sbjct: 4 KSVMIKVENVSFSYPNSE----NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 1411 YPTDGTAFIFGKDIRSDP-KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRM 1468
P G I G I + K R+ IG Q D TV++ + K V +M
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM-DPIAK 1527
D++ + + + + K LSGG K+++++A + +P I+I DE ST M DP K
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE-STSMLDPKGK 178
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
R + +++ L + K +I TH M+EA L ++ + G+L G P+ +
Sbjct: 179 REIKKIMVDLR-KTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 2e-21
Identities = 64/217 (29%), Positives = 115/217 (52%), Gaps = 10/217 (4%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR + A+ + V G LG +G+GK+T L +I+G E P G + G+D +
Sbjct: 8 KRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA-TR 66
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEH----LELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
A R IG+ Q AL ++LTV+++ LE+ K + R+++++ +LV+ + L
Sbjct: 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL--ELVQLEGLG 124
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+ P+ LSGG ++++++A A+ +P +++LDEP +D ++ + + +L
Sbjct: 125 D-RYPN-QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
T V TH EA + RI +M G++ IGSP +
Sbjct: 183 TTV-FVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-21
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ R L + G ++ + LTL +++A+LG NGAGKST + L G + P +G+
Sbjct: 3 LEARNLSV----RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE 58
Query: 510 ALVFGKNITADMD--EIRKGLGVCPQYDIL-FPELTVREHLEM-FAVLKGVKEELLESVV 565
+ G+ + AD E+ + V PQ+ L FP TV E + M A + E +++V
Sbjct: 59 VRLNGRPL-ADWSPAELARRRAVLPQHSSLSFP-FTVEEVVAMGRAPHGLSRAE-DDALV 115
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI------GDSKVVILDEPTSGMDPY- 618
A + +V LA LSGG ++++ L L G + ++LDEPTS +D
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 619 ---SMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+RL QL + I++L H ++ A DRI ++ G L G+
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVL--HDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-21
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 6/181 (3%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430
++ L+F++ AGE G NG GKTT L +++G P G G +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
Query: 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1490
R I Y L L+ E+L +A I G A + + L L P+
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGA----QRTIEDALAAVGLTGFEDLPAA 126
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1550
LS G +R+L++A + P+ ILDEP+T +D + ++ R G V+LTT
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG--IVLLTT 184
Query: 1551 H 1551
H
Sbjct: 185 H 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-21
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I + K + A++ + L + +++ALLG +GAGKST + ++ GL P G
Sbjct: 3 IRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 510 ALVFGKNITADMDEIR---KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-- 564
+ + D+ + + +G Q+ LFP +TV +++ F LK KE E+
Sbjct: 59 -IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIA-FG-LKVRKERPSEAEIR 115
Query: 565 --VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR- 621
V E++ V L + LSGG +++++L AL + KV++LDEP +D +R
Sbjct: 116 ARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA-KVRK 174
Query: 622 -LTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 661
L L K + G + TH +EA EL DR+ ++ G +
Sbjct: 175 ELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-21
Identities = 74/241 (30%), Positives = 130/241 (53%), Gaps = 16/241 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L+N+ KV+P G R A+++++ + AGE FG +G +GAGK+T + I+ E PT
Sbjct: 2 IELKNISKVFPQGGR--TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS 59
Query: 1415 GTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
G + G+D+ + + ARR IG Q LL TV +++ L + G + +
Sbjct: 60 GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA 119
Query: 1471 VVMEKLVEFDLLKHAKK-PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
V E L L A + P+ LSGG K+++++A A+ +P +++ DE ++ +DP R
Sbjct: 120 RVTELLELVGLSDKADRYPA-QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKT 1582
+ E++ ++ G T ++L TH M+ + +C R+ ++ G+L G+ P+H T
Sbjct: 179 ILELLKDINRELGLT-IVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLT 237
Query: 1583 R 1583
R
Sbjct: 238 R 238
|
Length = 343 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 8/194 (4%)
Query: 460 ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 519
A RG L TL + L + G NG GK+T + +L GL+ P +G+ G +
Sbjct: 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAE 66
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 579
DE + + L PEL+ E+L +A + G + +E + + VGL +
Sbjct: 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIE----DALAAVGLTGFED 122
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILL 638
+ LS G +R+L+L + + + ILDEPT+ +D + L L++ + +G I+LL
Sbjct: 123 LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182
Query: 639 TTH---SMDEAEEL 649
TTH + EA EL
Sbjct: 183 TTHQDLGLVEAREL 196
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD 522
RG + L TL + L + G NGAGK+T + +L GL+ P G+ G+ I +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE 71
Query: 523 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE----VGLADKV 578
+ L + ELT E+L + + S A + E VGLA
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFW-------QRFHGSGNAATIWEALAQVGLAGLE 124
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIIL 637
++ V LS G +R+++L + + + ILDEP + +D + L L+ +G I+L
Sbjct: 125 DLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 638 LTTH 641
LTTH
Sbjct: 185 LTTH 188
|
Length = 209 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 59/218 (27%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K Y R A+ + + + + + L G +GAGKST + ++ G PT G
Sbjct: 2 IRFENVSKAYPGGRE---ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
LV G +++ ++ +R+ +GV Q L P+ TV E++ + + G + V
Sbjct: 59 ILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV 118
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP-YSMRLTW 624
+E++D VGL K + LSGG ++++++ A++ V++ DEPT +DP S +
Sbjct: 119 SEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM- 177
Query: 625 QLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+L ++I + G +L+ TH ++ + R+ + +G L
Sbjct: 178 RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 5e-21
Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 22/227 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 504
I ++ L Y G+ A+ + L + ENQ+ AL+G +G GKST T++ + LIP
Sbjct: 4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 505 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 560
G+ L+ G++I D++++RK +G+ Q FP +++ +++ G+K+ +
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKK 118
Query: 561 LESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
L+ +V A + DEV D++ LSGG +++L + AL + +V+++DEPTS
Sbjct: 119 LDEIVEKSLKGAALWDEV--KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+DP S +LI+++KK I++ TH+M +A + D+ A NG +
Sbjct: 177 LDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223
|
Length = 250 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (236), Expect = 5e-21
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 32/233 (13%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITADMD 522
A+ + L + + AL+GH G+GKST + L GL+ PT GD +V + ++
Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80
Query: 523 EIRKGLGVCPQYDILFPELTVREHLEMFAVLK---------GVKEELLESVVAEMVDEVG 573
+RK +GV Q FPE + E VLK G+ +E E + AE ++ VG
Sbjct: 81 PVRKKVGVVFQ----FPESQLFEE----TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVG 132
Query: 574 LADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-K 631
LAD+ LSGG R++++ L + +V++LDEPT+G+DP + QL + I +
Sbjct: 133 LADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192
Query: 632 KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL-------FLK-HQYGV 676
G+ ++L TH MD+ + D + ++ G + CG+ FLK H+ GV
Sbjct: 193 SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245
|
Length = 288 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 6e-21
Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 18/200 (9%)
Query: 1370 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DP 1428
S K + ++ + G + +G +GAGK+T + +I+ PT+G+ I G DI++ D
Sbjct: 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV 72
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLKH 1484
RR IG Q L E TV++++E +KG EY + V + K ++
Sbjct: 73 IDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK-------EY 124
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
A + LSGG +++S+A + +P +++LDEP++ +DP + + E+I +L + T
Sbjct: 125 ATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLT 184
Query: 1545 AVILTTHSMNEAQALCTRIG 1564
VI TH+M +A+ RIG
Sbjct: 185 -VIWITHNMEQAK----RIG 199
|
Length = 241 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 6e-21
Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 25/229 (10%)
Query: 450 IQIRKLHKVYA-----TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
I+ + +Y+ K+G ++++ L E +AL+GH G+GKST + L+
Sbjct: 3 IKFENVDYIYSPGTPMEKKG----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK 58
Query: 505 PTTGDALVFGKNITAD-----MDEIRKGLGVCPQYDILFPEL-----TVREHLEMFAVLK 554
P++G + G +IT + + ++RK + + Q FPE TV + +E
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNF 114
Query: 555 GVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
G E+ + + + +VGL++ + + LSGG R++++ + + +++ LDEP +
Sbjct: 115 GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174
Query: 614 GMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 661
G+DP + QL K +K G ++L TH+MD+ E D + ++ +G L
Sbjct: 175 GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 7e-21
Identities = 47/198 (23%), Positives = 109/198 (55%), Gaps = 10/198 (5%)
Query: 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1441
+V GE +G +GAGK+T L++I+G P G+ + + +R + Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA-PYQRPVSMLFQE 78
Query: 1442 DALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1497
+ L +LTV++++ L ++ + ++ D + + D L + P LSGG +
Sbjct: 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYL--DRLPE-QLSGGQR 134
Query: 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
+++++A ++ PI++LDEP + +DP+ + M ++ +L + + +T +++ TH +++A+
Sbjct: 135 QRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT-LLMVTHHLSDAR 193
Query: 1558 ALCTRIGIMVGGQLRCIG 1575
A+ ++I ++ G+++ +
Sbjct: 194 AIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 7e-21
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 6/204 (2%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRK 526
++ L L + ++LAL+G +G GK+T + + G + TG + +++T ++
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT-HAPPHKR 79
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
GL + Q LFP L V +++ + + + + VA+ + VGL D + LS
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLS 139
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQLIKKIKKGRIILLTTHSM 643
GGM++++++ A+ + V++LDEP S +D +MR + + IL TH
Sbjct: 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199
Query: 644 DEAEELGDRIAIMANGSLKCCGSS 667
D+A L D+ IM +G L G
Sbjct: 200 DDALTLADKAGIMKDGRLAAHGEP 223
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 8e-21
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 1377 HSLTFSVQA-GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG-------KDIRSDP 1428
+L E G G +GAGK+T L I+G E P GT + G K I P
Sbjct: 13 FTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1488
+ +R IG Q AL +L V+E+L + K E R V E L L +
Sbjct: 73 Q--QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR--ISVDELLDLLGLDHLLNRY 128
Query: 1489 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
LSGG K+++++A A+ P +++LDEP + +D + + + ++ VI
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP-VIF 187
Query: 1549 TTHSMNEAQALCTRIGIMVGGQLRCIG 1575
TH ++EA+ L RI +M G+L+ IG
Sbjct: 188 VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 9e-21
Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 18/225 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP-- 504
++ + L+ Y K+ A+N + L +YEN+I AL+G +G GKST ++ + LI
Sbjct: 5 MESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 505 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-L 560
G+ L+ GKNI D+ E+RK +G+ Q FP +++ +++ + G+K++
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKE 119
Query: 561 LESVVAEMVDEVGLADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
L+ +V + + L D+V ++ LSGG +++L + + V+++DEPTS +D
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
Query: 617 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
P S L+ ++KK I++ TH+M +A + D A G L
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224
|
Length = 251 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-20
Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
Y G K A+ + ++++GE LG +G GKTT L++I+G G+ + GK
Sbjct: 11 YGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP 64
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
+ P A R G Q + LL + VQ+++ ++ GV + + ++ + L + L
Sbjct: 65 V-EGPGAER---GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG 120
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
K+ + LSGG ++++ +A A+ +P +++LDEP +D + M ++ +L GK
Sbjct: 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGK 180
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585
V+L TH + EA + T + ++ G R + + L F
Sbjct: 181 Q-VLLITHDIEEAVFMATELVLLSPGPGRVV---ERLPLNFA 218
|
Length = 255 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 9/219 (4%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
NL K Y G +H+++FS+ GE +G++G+GK+T L ++ G + PT G
Sbjct: 9 DNLCKRYQEGSVQTD--VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66
Query: 1418 FIFGKDIRSDPKAAR-----RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G+ + AA+ + +G+ QF LL T E++ + I ++
Sbjct: 67 IFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRA 126
Query: 1473 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
+E L L A LSGG ++++++A A++ +P +V+ DEP+ +D +++
Sbjct: 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
++ L+ QG TA ++ TH + A+ + +R M G+L
Sbjct: 187 LLGELNRLQG-TAFLVVTHDLQLAKRM-SRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-20
Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 22/241 (9%)
Query: 434 EAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKS 493
++ +Q G+ +++R + Y ++ A+ + LTL + + +A+LG +G+GKS
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTK--ALKNFNLTLAQGEKVAILGRSGSGKS 378
Query: 494 TTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHL----- 547
T + +L G P G + G I + D +R+ + V Q LF T+R++L
Sbjct: 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP 437
Query: 548 -----EMFAVLKGVK-EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601
E++A L+ V E+LLES GL + R LSGG +R+L+L AL+
Sbjct: 438 DASDEELWAALQQVGLEKLLES------APDGLNTWLGEGGRRLSGGERRRLALARALLH 491
Query: 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
D+ + +LDEPT G+DP + R L+ + +G+ +L+ TH + E + DRI ++ NG +
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGKI 550
Query: 662 K 662
Sbjct: 551 I 551
|
Length = 573 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 15/227 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I +RNL Y G S K + + + GE G +G+GKTT L++I G
Sbjct: 1 VISIRNLNHYY--GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ 58
Query: 1414 DGTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLT----VQEHLELYARIKGVAE 1465
+G+ + G+++ + RR IGY Q LL +LT VQ LEL + E
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNL-SYQE 117
Query: 1466 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
R M + V L H LSGG K+++++A A++ P +V+ DEP+ +D
Sbjct: 118 ARERARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK 175
Query: 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
+ R + E++ +L+ QG +++ TH N + RI M G+L
Sbjct: 176 SGRDVVELMQKLAREQG-CTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 67/222 (30%), Positives = 122/222 (54%), Gaps = 23/222 (10%)
Query: 458 VYATKR-----GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML---VGLIPP--TT 507
V+ T+ G A+ ++ L ++EN++ A++G +G GKST I L V L+P TT
Sbjct: 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTT 83
Query: 508 GDALVFGKNITAD---MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLES 563
G L +NI ++E+R +G+ Q FP+ ++ +++ + G+K++ L+
Sbjct: 84 GKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDE 142
Query: 564 VV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+V A + DE L D+++ LSGG +++L + L + V+++DEPTS +DP
Sbjct: 143 IVEKSLRGAAIWDE--LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP 200
Query: 618 YSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
S +L++++KK I++ TH+M +A + D+ A NG
Sbjct: 201 ISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242
|
Length = 271 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 11/225 (4%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
++ NL K Y GK D +V + ++ S+ GE +G++G+GK+T L ++ G + PT
Sbjct: 1 LLKCENLGKRYQEGKL-DTRV-LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58
Query: 1414 DGTAFIFGKDIR--SDPKAAR---RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
G G+ + S + A+ + +G+ QF LL T E++ + I +
Sbjct: 59 SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA 118
Query: 1469 DDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
+ E L + L +PS LSGG ++++++A A++ P +V+ DEP+ +D
Sbjct: 119 KERAYEMLEKVGLEHRINHRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
+ +++++ L+ T+ ++ TH + A+ L R+ M GQL
Sbjct: 178 KIIFDLMLELNRELN-TSFLVVTHDLELAKKL-DRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-20
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 9/213 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++R + K + K +++L LT+ + L LLG +G GK+T + ++ G P +G
Sbjct: 15 VELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
++ G++IT E R V Y LFP +TV E++ ++ + V E +
Sbjct: 71 IMLDGQDITHVPAENRHVNTVFQSY-ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-IK 628
V L + LSGG ++++++ A++ KV++LDE S +D Y +R Q +K
Sbjct: 130 RMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD-YKLRKQMQNELK 188
Query: 629 KIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+++ G + TH +EA + DRI +M +G
Sbjct: 189 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221
|
Length = 375 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 2e-20
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA-- 1430
+ + ++ +++ GE LG NGAGK+T L +SGE P G + G+ + A
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1490
ARR PQ +L TV+E + + G++ D +V L + DL A +
Sbjct: 75 ARRR-AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP 133
Query: 1491 TLSGGNKRKLSVAIAMI--------GDPPIVILDEPSTGMDP--------IAKRFMWEVI 1534
LSGG +++ V +A + G P ++LDEP++ +D +A++
Sbjct: 134 QLSGGEQQR--VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL----- 186
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ AVI+ H +N A RI ++ G+L G+P
Sbjct: 187 ----AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226
|
Length = 258 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-20
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
LT + +I A++G +G+GKST ++++ G P +G L+ G ++TA + + +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA-APPADRPVSML 75
Query: 532 PQYDILFPELTVREHLEMFAV----LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
Q + LF LTV +++ + L + +E +A + GLA + LSG
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV----GLAGLEKRLPGELSG 131
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDE 645
G +++++L L+ D V++LDEP + +DP L+ + + +L+ TH ++
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191
Query: 646 AEELGDRIAIMANG 659
A+ L R+ + NG
Sbjct: 192 AKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-20
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 12/197 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRK 526
A+ + T+ + +AL+G +GAGKST +++L+G + PT G V G + AD D R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEV--GLADKVN 579
+ PQ+ LF T+ E++ + + + + E V + GL +
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLAR--PDASDAEIREALERAGLDEFVAALPQGLDTPIG 453
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 639
LSGG ++L+L A + D+ +++LDEPT+ +D + + ++ + +GR +LL
Sbjct: 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLV 513
Query: 640 THSMDEAEELGDRIAIM 656
TH L DRI ++
Sbjct: 514 THR-LALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 29/245 (11%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPK 1429
K ++ L+ S+ G+ +G NG GK+T L + P GT F+ K I S +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 1430 AARRLIGYCPQFDALLEYLTVQE--------HLELYARIKGVAEYRMDDVVMEK--LVEF 1479
ARRL PQ E +TV+E L L+ R+ R+ + ME+ +
Sbjct: 74 LARRL-ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV-NQAMEQTRINHL 131
Query: 1480 DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
A + LSGG +++ +A+ + D P+V+LDEP+T +D + + ++ L+T
Sbjct: 132 -----ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186
Query: 1540 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH------LKTRFGNFLELEVK 1593
QGKT V+ H +N+A C + ++ G + G+P+ L+T F +E E+
Sbjct: 187 -QGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD--VEAEIH 242
Query: 1594 PTEVS 1598
P VS
Sbjct: 243 PEPVS 247
|
Length = 255 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 2e-20
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPT 506
I +H Y A+ + L +N+I AL+G +G GKST T++ + LIP
Sbjct: 6 ITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 507 T--GDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 560
T G+ + G+NI A D+ ++RK +G+ Q FP ++ E++ L GVK+ +
Sbjct: 62 TITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAV 120
Query: 561 LESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
L+ V A + DEV D ++ +LSGG ++++ + L V++LDEPTS
Sbjct: 121 LDEAVETSLKQAAIWDEV--KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+DP S ++ +++ I+L THSM +A + D+ A G+L
Sbjct: 179 LDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
|
Length = 252 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 14/223 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I IR L+ Y + + L + +I+ L G +G+GK+T ++++ GL G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESV 564
V G+ + ++ ++R+ +G Q L LT R++++M L+ + +
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARER 121
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
M++ VGL D ++ LSGG K+++++ AL+ K+V+ DEPT+ +D S R
Sbjct: 122 ARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV 181
Query: 625 QLIKKIKK--GRIILLTTHS---MDEAEELGDRIAIMANGSLK 662
+L++K+ + G IL+ TH +D A DRI M +G L
Sbjct: 182 ELMQKLAREQGCTILIVTHDNRILDVA----DRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 28/232 (12%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ L Y TKR +N L L+L +I AL+G NG GKST + L+ P +G
Sbjct: 3 LRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 510 ALVFGKNITADMD-EIRKGLGVCPQYDILFPE-LTVRE--------HLEMFAVLKGVKEE 559
+ K I+ ++ + L + PQ+ L PE +TVRE L ++ L
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQH-HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA 117
Query: 560 LLESVVAEM-VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
+ + + ++ LAD+ + LSGG +++ L + L D+ VV+LDEPT+ +D
Sbjct: 118 RVNQAMEQTRINH--LADR---RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 619 S----MRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
MRL +L +G+ ++ H +++A D + ++ANG + G+
Sbjct: 173 HQVELMRLMREL---NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 4e-20
Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 24/204 (11%)
Query: 1080 VSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSC 1139
+ +++ + A++IV+E+E + K++ L+SGVS L Y + D + L
Sbjct: 98 LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQ--- 154
Query: 1140 AIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFF 1199
+++ + + G LL +L+FL YGLA + L F + A V+ ++
Sbjct: 155 -LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILL 213
Query: 1200 TGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDKTSDGVF 1259
+ + + S L+ F + P F DGL +
Sbjct: 214 LSGFFGGLFPLPNM-------PSFLQWIFSIIPFFAPIDGLLRIIY------------GD 254
Query: 1260 DWNVTSASICYLGCESICYFLLTL 1283
+ S+ L + LL L
Sbjct: 255 LAEILL-SLIILLLFGVVLLLLAL 277
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 7e-20
Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TAD 520
+R + L + + A++G NGAGK+T +S+L G PP++GD + G+ +
Sbjct: 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE 99
Query: 521 MD-EIRKGLGVC-PQYDILFP-ELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEV 572
E+RK +G+ + F TVR+ + + + + +++ +
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-- 630
G + +LS G +R++ + AL+ D +++ILDEP G+D + ++++
Sbjct: 160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219
Query: 631 -KKGRIILLTTHSMDEA 646
+L TH +E
Sbjct: 220 SPGAPALLFVTHHAEEI 236
|
Length = 257 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 64/217 (29%), Positives = 116/217 (53%), Gaps = 17/217 (7%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++IR L K + + AV+ + LT+Y+ +I ALLG +G GKST + ML G PT G
Sbjct: 20 LEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ 75
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL-----ESV 564
++ G ++ + + ++ + + Q LFP +TV +++ G+K++ L S
Sbjct: 76 IMLDGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAF-----GLKQDKLPKAEIASR 129
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD-PYSMRLT 623
V EM+ V + + LSGG +++++L +L K+++LDEP +D R+
Sbjct: 130 VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQ 189
Query: 624 WQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
+++ +++ G ++ TH +EA + RIAIM G
Sbjct: 190 LEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
|
Length = 377 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-19
Identities = 63/199 (31%), Positives = 114/199 (57%), Gaps = 7/199 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRK 526
A+ + ++YE + +A++GHNG+GKST +L GL+ P G V G ++ + ++R+
Sbjct: 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81
Query: 527 GLGVCPQY-DILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLADKVNIVVRA 584
+G+ Q D F TV++ + GV +EE++E V + + +VG+ D +N
Sbjct: 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER-VDQALRQVGMEDFLNREPHR 140
Query: 585 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLT-THS 642
LSGG K+++++ L ++ILDE TS +DP R + ++++K + I +L+ TH
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200
Query: 643 MDEAEELGDRIAIMANGSL 661
+DEA + DR+ +M G +
Sbjct: 201 LDEAAQ-ADRVIVMNKGEI 218
|
Length = 279 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 8/214 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ LH Y K G A+ L L++ E ALLG NGAGKST + L G+ P G
Sbjct: 5 IEVEDLHFRY--KDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 510 ALVFGKNITADMD-EIRKGLGVCPQ--YDILFPELTVREHLEMFAVLKGVKEELLESVVA 566
V G+ + A+ + +R +G+ Q D +F TV + + V G+ ++ +E V
Sbjct: 62 VKVMGREVNAENEKWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVE 120
Query: 567 EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 626
E + V + D + LS G K+++++ L D V++LDEP + +DP ++
Sbjct: 121 EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180
Query: 627 IKKI-KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ ++ +G+ +++ TH +D A E D++ ++ G
Sbjct: 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214
|
Length = 274 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-MDEIRKGLGVCPQY-DILFP 539
L+++GHNG+GKSTT+ ++ GL+ +G ++ G +T + + +IR +G+ Q D F
Sbjct: 36 LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFV 95
Query: 540 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 599
TV + + KG+ E ++ V E ++ VG+ D LSGG K+++++ A+
Sbjct: 96 GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155
Query: 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMA 657
K++ILDE TS +DP + IK I+ ++ TH +DE L DR+ +M
Sbjct: 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK 214
Query: 658 NG 659
NG
Sbjct: 215 NG 216
|
Length = 279 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 1e-19
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI--- 524
A+N+ LT +N++ ++G G+GKST I + GLI TG +V I A++ +I
Sbjct: 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85
Query: 525 ---RKGLGVC---PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DK 577
RK +G+ P+Y LF E T+ + + V G ++ V E++ V L D
Sbjct: 86 KRLRKEIGLVFQFPEYQ-LFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY 143
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRI 635
V LSGG KR+++L + D ++LDEPT G+DP L +++ K +
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
I++ TH+MD+ + D + +M G + GS
Sbjct: 204 IIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 2e-19
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 17/230 (7%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L N K + G K A++ L+ + G+ +G+NGAGK+T L+ I+G+ PT
Sbjct: 1 MISLSNATKTFFKGT-PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59
Query: 1414 DGTAFIFGKDIRSDPKAAR-RLIGYCPQFDALL---EYLTVQEHLELYARIKGVAE---- 1465
G I G D+ A R L+ Q D L LT++E+L L A +G
Sbjct: 60 SGQILIDGVDVTKKSVAKRANLLARVFQ-DPLAGTAPELTIEENLAL-AESRGKKRGLSS 117
Query: 1466 ---YRMDDVVMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
R E+L L LSGG ++ LS+ +A + P I++LDE +
Sbjct: 118 ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+DP F+ E+ +++ T +++ TH+M +A R+ ++ G+
Sbjct: 178 ALDPKTAEFVMELTAKIVEEHKLTTLMV-THNMEDALDYGNRLIMLHSGK 226
|
Length = 263 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-19
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 527
+ ++ ++ + LA++G +G+GKST +++GL+ PT+G + G +I D +E+
Sbjct: 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH 77
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
+G PQ D LF ++ E NI LSG
Sbjct: 78 VGYLPQDDELFSG-SIAE---------------------------------NI----LSG 99
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEA 646
G +++L L AL G+ ++++LDEP S +D R Q I +K G ++ H E
Sbjct: 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ET 158
Query: 647 EELGDRIAIMANG 659
DRI ++ +G
Sbjct: 159 LASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 2e-19
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK--- 1429
A+H + + G+ + +G G+GK+T + I+ PT GT + I K
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 1430 --AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD-DVVMEKLVEFDLLKH- 1484
R+ IG QF ++ L TV+ + G ++M+ D V LL
Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIF-----GPKNFKMNLDEVKNY--AHRLLMDL 132
Query: 1485 ------AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
+ F +SGG RK+++ + +P I++LDEP+ G+DP +KR + ++ L
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192
Query: 1539 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
T + KT +IL +H MNE + +M G + SP+ L
Sbjct: 193 TDENKT-IILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 12/207 (5%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRLIGY 1437
+V AGE LG +GAGK+T L++I+G E P G I G D S P A R +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75
Query: 1438 CPQFDALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1493
Q + L +LTV +++ L ++ +++ + + LK + P LS
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLK--RLPG-ELS 131
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1553
GG ++++++A ++ + PI++LDEP + +DP + M ++S+L + T +++ TH
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT-LLMVTHHP 190
Query: 1554 NEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+A + R+ + G++ GS Q L
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-19
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 25/254 (9%)
Query: 1348 GSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS 1407
+ + LRN+ YPG + A+ + ++ GE LG +G+GK+T L +++
Sbjct: 330 TATTGQALELRNVSFTYPGQQTK----ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385
Query: 1408 GEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKG 1462
G P G+ + G +I S D +A R I Q F T++++L L
Sbjct: 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-----TLRDNLRLANPDAS 440
Query: 1463 VAEYR--MDDVVMEKLVEFD---LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
E + V +EKL+E L + LSGG +R+L++A A++ D P+ +LDE
Sbjct: 441 DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE 500
Query: 1518 PSTGMDPIAKRFMWEVISRLSTR-QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
P+ G+DPI +R +V++ L +GKT +++ TH + + RI ++ G++ G+
Sbjct: 501 PTEGLDPITER---QVLALLFEHAEGKT-LLMVTHRLRGLER-MDRIIVLDNGKIIEEGT 555
Query: 1577 PQHLKTRFGNFLEL 1590
L G + L
Sbjct: 556 HAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-19
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMD 522
G ++ + L L + +A+LG +G+GKST ++ L GL+ P G+ + G + + D D
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 523 EIRKGLGVCPQYDILFPELTVREHL----------EMFAVLKGVKEELLESVVAEMVDEV 572
E+R+ + VC Q LF + TVRE+L E++A L+ V L + + D
Sbjct: 406 EVRRRVSVCAQDAHLF-DTTVRENLRLARPDATDEELWAALERVG---LADWLRALPD-- 459
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
GL + LSGG +++L+L AL+ D+ +++LDEPT +D + + +
Sbjct: 460 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519
Query: 633 GRIILLTTHS 642
GR ++L TH
Sbjct: 520 GRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-19
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK--NITADMDEIR 525
A++ + Q+ AL+G NGAGKST + +L G P G L+ G+ + +
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78
Query: 526 KGLGVCPQYDILFPELTVREHLEMFAVLKG----VKEELLESVVAEMVDEVGLADKVNIV 581
G+ + Q L PE+TV E+L L V LL E ++ +G+ +
Sbjct: 79 AGVAIIYQELHLVPEMTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP 137
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK----KGRIIL 637
++ LS G ++ + + AL +++V+ DEPTS + S R QL + I+ +GR+IL
Sbjct: 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREIEQLFRVIRELRAEGRVIL 194
Query: 638 LTTHSMDEAEELGDRIAIMANG 659
+H M+E L D I + +G
Sbjct: 195 YVSHRMEEIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA- 1431
K + + FS++ GE +G GAGKTT ++++ P G I G DIR + +
Sbjct: 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75
Query: 1432 RRLIGYCPQFDALLEYLTVQEHLEL---YAR----IKGVAEYRMDDVVMEKLVEFDLLKH 1484
R +IG Q D L T+ E++ L A I+ E D +M KL
Sbjct: 76 RSMIGVVLQ-DTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIM-KLPN-GYDTV 132
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
+ LS G ++ L++A AM+ DP I+ILDE ++ +D ++ + E + +L +G+T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL--MKGRT 190
Query: 1545 AVI 1547
++I
Sbjct: 191 SII 193
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 44/189 (23%)
Query: 479 NQILALLGHNGAGKSTTISML-----VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ 533
+ AL+G +GAGK+T + +L G+I TG+ L+ G+ + ++ G Q
Sbjct: 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD---KNFQRSTGYVEQ 86
Query: 534 YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
D+ P LTVRE L A+L R LS +++L
Sbjct: 87 QDVHSPNLTVREALRFSALL-----------------------------RGLSVEQRKRL 117
Query: 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH--SMDEAEELG 650
++G+ L ++ LDEPTSG+D + + +KK+ G+ IL T H S E+
Sbjct: 118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF- 176
Query: 651 DRIAIMANG 659
DR+ ++ G
Sbjct: 177 DRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 3e-19
Identities = 61/208 (29%), Positives = 116/208 (55%), Gaps = 14/208 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNITA--- 519
A+N++ + + +N I AL+G +G GKST T++ + L+ G+ + GKNI +
Sbjct: 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL-LESVVAEMVDEVGL---- 574
D+ E+R+ +G+ Q F +++ +++ + G K++ L+ +V + + + L
Sbjct: 82 DILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV 140
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 634
DK+N +LSGG +++L + L + V+++DEPTS +DP S +LI +K+
Sbjct: 141 KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY 200
Query: 635 IILLTTHSMDEAEELGDRIAIMANGSLK 662
I++ TH+M +A + DR A NG ++
Sbjct: 201 TIIIVTHNMQQAGRISDRTAFFLNGCIE 228
|
Length = 254 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 3e-19
Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 58/256 (22%)
Query: 450 IQIRKLHKVYATKRGNC-----CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
++++ L K + +G AV+ + ++ E + L L+G +G GKST +++GL
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 505 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
PT+G+ L GK+IT + KEE E
Sbjct: 65 PTSGEILFEGKDIT-KLS----------------------------------KEERRE-R 88
Query: 565 VAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR-- 621
V E++++VGL ++ LSGG ++++ + AL + K+++ DEP S +D S++
Sbjct: 89 VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD-VSVQAQ 147
Query: 622 -LTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS--LFL--KHQY 674
L L+K +++ G L +H + + DRIA+M G + G + +F H
Sbjct: 148 ILN--LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP- 204
Query: 675 GVGYTLTLVKSAPDAS 690
YT L+ + P
Sbjct: 205 ---YTKALLSAVPVPD 217
|
Length = 268 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-19
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 5/187 (2%)
Query: 484 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 543
LLG +G GK+T + +L G P +G ++ G+++T +R + + Q LFP +TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR-HINMVFQSYALFPHMTV 59
Query: 544 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603
E++ ++ V ++ V E + V L + + LSGG +++++L AL+
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119
Query: 604 KVVILDEPTSGMDPYSMRLTWQL-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGS 660
K+++LDEP S +D +R QL +K I++ G + TH +EA + DRIAIM G
Sbjct: 120 KILLLDEPLSALD-KKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178
Query: 661 LKCCGSS 667
+ G+
Sbjct: 179 IAQIGTP 185
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
+ II + +L Y G + A+ L+ S+ G LG NGAGK+T L ++G
Sbjct: 2 DNIIEVEDLHFRYKDGTK-----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56
Query: 1412 PTDGTAFIFGKDI-RSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD 1469
P G + G+++ + K R +G Q D + TV + + G+ + ++
Sbjct: 57 PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVE 116
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAK 1527
V E L + KP + LS G K+++++A +AM DP +++LDEP +DP +
Sbjct: 117 RRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQ 174
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ E++ RL QGKT VI+ TH ++ A ++ ++ G++ G L
Sbjct: 175 ETLMEILDRLH-NQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
Length = 274 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-19
Identities = 62/208 (29%), Positives = 114/208 (54%), Gaps = 17/208 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNITADMD 522
A+ S+ L + Q+ AL+G +G GKST ++ + LI TG + G++I ++D
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 523 --EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVV------AEMVDEVG 573
++R +G+ Q FP +++ E++ +G+K++ +L+ VV A + DEV
Sbjct: 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV- 135
Query: 574 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 633
D++ LSGG +++L + + + V+++DEPTS +DP + +L++++KK
Sbjct: 136 -KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN 194
Query: 634 RIILLTTHSMDEAEELGDRIAIMANGSL 661
I++ THSM +A + DR A G L
Sbjct: 195 YTIVIVTHSMQQARRISDRTAFFLMGEL 222
|
Length = 249 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-19
Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 18/215 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPTT--GDALVFGKNITA--- 519
A++ + L +NQ+ AL+G +G GKST ++ + LIP G+ L+ G+NI
Sbjct: 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVV------AEMVDEV 572
D+ E+R+ +G+ Q FP+ ++ E++ + GVK + L V A + DEV
Sbjct: 81 DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV 139
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
D+++ LSGG +++L + AL + +V+++DEP S +DP + + +LI ++K
Sbjct: 140 --KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA 197
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
I++ TH+M +A + D A G L G +
Sbjct: 198 RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232
|
Length = 253 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 4e-19
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--- 519
RGN C +++ LT+ +I A++G +G GK+T + ++ G I P G+ L G+NI A
Sbjct: 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR 76
Query: 520 -DMDEIRKGLGVCPQYDILFPELTV--------REHLEMFAVLKGVKEELLESVVAEMVD 570
+ +RK + + Q LF ++ V REH ++ LL S V ++
Sbjct: 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL-------PAPLLHSTVMMKLE 129
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
VGL ++ LSGGM R+ +L A+ + +++ DEP G DP +M + +LI ++
Sbjct: 130 AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL 189
Query: 631 KK--GRIILLTTHSMDEAEELGDRIAIMA 657
G ++ +H + E + D I+A
Sbjct: 190 NSALGVTCVVVSHDVPEVLSIADHAYIVA 218
|
Length = 269 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 5e-19
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
++ N+ K Y GG+ + L+F + G+ +G NGAGK+T L +++GE
Sbjct: 319 KLVLEFENVSKGYDGGRLL-----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373
Query: 1412 PTDGTAFIFGKDIRSDPKAARRLIGYCPQ-FDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
P GT G+ ++ IGY Q D L TV E L E R
Sbjct: 374 PLSGT-VKVGETVK---------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR--- 420
Query: 1471 VVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
L F + +KP LSGG K +L +A ++ P +++LDEP+ +D +
Sbjct: 421 ---AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE- 476
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
+ L +G V+L +H + TRI
Sbjct: 477 --ALEEALLDFEG--TVLLVSHDRYFLDRVATRI 506
|
Length = 530 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-19
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 36/195 (18%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
+ +L L L + + +ALLG +G+GKST + +L G + P G+ + G ++ +
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
+ V Q LF + T+R +L R SG
Sbjct: 77 ISVLNQRPYLF-DTTLRNNLG----------------------------------RRFSG 101
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAE 647
G +++L+L L+ D+ +V+LDEPT G+DP + R LI ++ K + ++ TH + E
Sbjct: 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161
Query: 648 ELGDRIAIMANGSLK 662
+ D+I + NG +
Sbjct: 162 HM-DKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-19
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
L TL + L + G NG+GK+T + +L GL PP G L+ G + D I +GL
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
Query: 532 PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKR 591
+ L+V E+L + + V E + VGL + V LS G +R
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQR 132
Query: 592 KLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTWQLIKKIKKGRIILLTTH 641
+++L L+ + ILDEPT+ +D + R + +G +++LTTH
Sbjct: 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 5e-19
Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
+ ++ ++ + + ++G G+GKS+ + L L+ ++G L+ G +I+ + ++R
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 527 GLGVCPQYDILFPELTVREHL---------EMFAVLKGVKEELLESVVAEMVDEVGLADK 577
+ + PQ +LF T+R +L E++ L+ V L+ V + GL
Sbjct: 79 RISIIPQDPVLF-SGTIRSNLDPFGEYSDEELWQALERVG---LKEFVESLPG--GLDTV 132
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL 637
V LS G ++ L L AL+ SK+++LDE T+ +DP + L + I++ K +L
Sbjct: 133 VEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVL 192
Query: 638 LTTHS----MDEAEELGDRIAIMANGSLKCCGS 666
H +D DRI ++ G + S
Sbjct: 193 TIAHRLDTIIDS-----DRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 7e-19
Identities = 63/262 (24%), Positives = 122/262 (46%), Gaps = 43/262 (16%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEE 1410
I +R+L +Y G K A+ + + + +G +G GK+T L ++ +
Sbjct: 6 PAIEVRDLN-LYYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
Query: 1411 YP---TDGTAFIFGKDIRS---DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARI 1460
P +G + GK+I D RR +G Q F +++ +++ R+
Sbjct: 60 IPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-----MSIYDNVAYGLRL 114
Query: 1461 KGVAEYRMDDVVMEKLVE---FDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1516
G+ + +D++V L + +D +K K + LSGG +++L +A A+ P ++++D
Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 1517 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG- 1575
EP++ +DPI+ + E+I+ L K +++ TH+M +A + G+L G
Sbjct: 175 EPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231
Query: 1576 ------SPQHLKT------RFG 1585
+P+H +T RFG
Sbjct: 232 TDKIFTNPKHKRTEDYISGRFG 253
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 7e-19
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IP-- 504
I + +H Y GN A++ + L E ++ AL+G +G GKST + L + I
Sbjct: 5 ISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENI 60
Query: 505 PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-EL 560
TG+ G+NI D+ E+RK +G+ Q FP +V +++ + GVK+ EL
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKEL 119
Query: 561 LESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
++ V E + + + D ++ +A SGG ++++ + AL KVV+LDEPTS +D
Sbjct: 120 IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
Query: 617 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
P S + + ++K ++ TH++ +A + D+ A + NG L
Sbjct: 180 PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224
|
Length = 251 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 7e-19
Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 18/224 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KAAR 1432
AV+++ V+ E +G NGAGKTT + ++G PT GT + G+ I P + AR
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79
Query: 1433 RLIGYCPQ----FDAL--LEYLTVQEHLELYARI-----KGVAEYRMDDVVMEK----LV 1477
+ Q F + +E L V +H +L + K A R + +++ L
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
LL+HA + + L+ G +R+L +A M+ P I++LDEP+ G++P + + E+I+ L
Sbjct: 140 RVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199
Query: 1538 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581
+ V+L H M + RI ++ G G+P+ ++
Sbjct: 200 R-NEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
Length = 255 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-19
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 33/229 (14%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRLIGY 1437
L+ + GE +G +G+GK+T L ++ G P G + G D+ D + RR +GY
Sbjct: 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551
Query: 1438 CPQFDALLEYLTVQEHLELY------------ARIKGVAEY--RMDDVVMEKLVEFDLLK 1483
Q D L +++E++ L A++ G E+ + + E
Sbjct: 552 VLQ-DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG---- 606
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
LSGG +++L++A A++ P I++LDE ++ +DP + ++ L
Sbjct: 607 -----GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA---IILQNLLQILQG 658
Query: 1544 TAVILTTH--SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
VI+ H S RI ++ G++ GS + L + G + L
Sbjct: 659 RTVIIIAHRLSTI---RSADRIIVLDQGKIVEQGSHEELLAQGGLYARL 704
|
Length = 709 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 8e-19
Identities = 58/223 (26%), Positives = 117/223 (52%), Gaps = 11/223 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++R + K + G+ A++ + L + +++ALLG +G+GK+T + ++ GL P +G
Sbjct: 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLESVV 565
L G++ T D+ + +G Q+ LF +TV ++ L + + E + + V
Sbjct: 59 ILFGGEDAT-DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E++ V L + LSGG +++++L AL + KV++LDEP +D + +
Sbjct: 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177
Query: 626 LIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
++++ + + TH +EA E+ DR+ +M G ++ G+
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 8e-19
Identities = 53/218 (24%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
+++ + V + +++ GE F +G +G+GK+T + +++ PT G I G DI
Sbjct: 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI 95
Query: 1428 PKAA-----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
A R+ I Q AL+ ++TV ++ + G+ + ++ L + L
Sbjct: 96 SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
+A LSGG ++++ +A A+ +P I+++DE + +DP+ + M + + +L +
Sbjct: 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+T ++ +H ++EA + RI IM G++ +G+P +
Sbjct: 216 RT-IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 8e-19
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 11/212 (5%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR-RL 1434
+ ++ ++ GE LG NGAGK+T L +SGE P G + G + S P R
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD--VVMEKLVEFDLLKHAKKPSFTL 1492
PQ +L TVQE +++ +D + + L DL A + TL
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTL 136
Query: 1493 SGGNKRKLSVAIAM------IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
SGG ++++ +A + + + LDEP++ +D + + +L+ G
Sbjct: 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA 196
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+L H +N A RI ++ G++ GSPQ
Sbjct: 197 VL--HDLNLAAQYADRIVLLHQGRVIASGSPQ 226
|
Length = 259 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 8e-19
Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 27/209 (12%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
+ + + + Q +++GHNG+GKST +++G+ +G+ + IT + +++RK
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83
Query: 527 GLGVCPQ------------YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL 574
+G+ Q YD+ F LE AV + + V+E + +V +
Sbjct: 84 HIGIVFQNPDNQFVGSIVKYDVAF-------GLENHAV----PYDEMHRRVSEALKQVDM 132
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--K 632
++ + ALSGG K+++++ L + V+ILDE TS +DP + + L++K+K
Sbjct: 133 LERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSL 661
I+ TH + EA E D + +M G++
Sbjct: 193 NITIISITHDLSEAME-ADHVIVMNKGTV 220
|
Length = 269 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 9e-19
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 1366 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1425
G DAK+ +++++ SV+AGE G +G GK+T L +++ PT GT G+D+
Sbjct: 10 GYLAGDAKI-LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 1426 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD-DVVMEKLVEFDL-L 1482
+ P+A R+ + YC Q AL TV+++L +I+ R D ++ L F L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR---NRRPDRAAALDLLARFALPD 124
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
K LSGG K+++++ + P I++LDE ++ +D KR + E+I R R+
Sbjct: 125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY-VREQ 183
Query: 1543 KTAVILTTHSMNEA 1556
AV+ TH ++A
Sbjct: 184 NVAVLWITHDKDQA 197
|
Length = 223 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 1e-18
Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 12/215 (5%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD-----IRSDP 1428
+ VH+ + ++ GE +G +G+GK+T L ++G + G+ + D D
Sbjct: 38 LGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDA 97
Query: 1429 KAARRL----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1484
RRL + Q ALL + TV+E++ ++G+ + V E+L L +
Sbjct: 98 ATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQW 157
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGK 1543
A + LSGG ++++ +A A + PI+++DEP + +DP I + E++ L ++ K
Sbjct: 158 ADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL-ELQSKLKK 216
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
T ++ +H ++EA + RI IM GG++ G+P+
Sbjct: 217 T-IVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 2e-18
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 40/201 (19%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM--DEIR 525
AV + + +I+ + G G G++ L GL PP +G+ + GK +T D IR
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 526 KGLGVCP---QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582
G+ P + + L +L+V E NI +
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAE---------------------------------NIAL 101
Query: 583 RA-LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTT 640
+ LSGG ++K+ L L D +V+ILDEPT G+D + ++LI+++ G+ +LL +
Sbjct: 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 641 HSMDEAEELGDRIAIMANGSL 661
+DE L DRI +M G +
Sbjct: 162 SELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 13/197 (6%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1438
L+F++ AGE G NG+GKTT L +I+G P GT + G DI DP A Y
Sbjct: 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DPDVAEA-CHYL 78
Query: 1439 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498
+A+ LTV E+LE +A G E + L L A P LS G KR
Sbjct: 79 GHRNAMKPALTVAENLEFWAAFLGGEELD----IAAALEAVGLAPLAHLPFGYLSAGQKR 134
Query: 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS---MNE 1555
++++A ++ + PI ILDEP+ +D A E+I + G VI TH +
Sbjct: 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG--IVIAATHIPLGLPG 192
Query: 1556 AQALCTRIGIMVGGQLR 1572
A+ L +G
Sbjct: 193 AREL--DLGPFAAEDPA 207
|
Length = 207 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
II + ++ YP A A+ ++FSV GE +G NG+GK+T +++G
Sbjct: 3 EEIIRVEHISFRYPD----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58
Query: 1412 PTDGTAFIFGK--------DIRSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKG 1462
P GT + G D+R R +G Q D TVQ+ + G
Sbjct: 59 PEAGTITVGGMVLSEETVWDVR-------RQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI--GDPPIVILDEPST 1520
V M + V + L + + + LSGG K++ VAIA + P I+ILDE ++
Sbjct: 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR--VAIAGVLALQPDIIILDEATS 169
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+DP +R + E + +L ++G T V+ TH ++EA A R+ +M G++ G+P+ +
Sbjct: 170 MLDPRGRREVLETVRQLKEQKGIT-VLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 69/240 (28%), Positives = 115/240 (47%), Gaps = 7/240 (2%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
II ++NL Y K K ++ ++F V+ GE +G NG+GK+TT+ +I G
Sbjct: 3 NIIEVKNLTFKY---KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA 59
Query: 1413 TDGTAFIFGKDIRSDPK-AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDD 1470
G I G + + R IG Q D TV++ + KG+ M +
Sbjct: 60 ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE 119
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V E L + ++ LSGG K+++++A A+ P I+ILDE ++ +DP + +
Sbjct: 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+ I + T VI TH ++E AL R+ +M GQ+ +P+ L +R + L+L
Sbjct: 180 IKTIKGIRDDYQMT-VISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQL 237
|
Length = 279 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-18
Identities = 60/201 (29%), Positives = 108/201 (53%), Gaps = 10/201 (4%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
+ + ++ + +A++G +G+GKST I +L+ L PT+G+ L+ G +I +D +RK
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV--GLADKVNIVV-- 582
+G+ Q +LF T+RE++ EE+ E++ E L D + +V
Sbjct: 404 RIGIVSQDPLLFSG-TIRENI-ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGE 461
Query: 583 --RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTT 640
LSGG +++L++ AL+ + ++ILDE TS +D + L +KK+ KGR L+
Sbjct: 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521
Query: 641 HSMDEAEELGDRIAIMANGSL 661
H + + DRI ++ NG +
Sbjct: 522 HRLSTIKN-ADRIIVLDNGRI 541
|
Length = 567 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 15/227 (6%)
Query: 450 IQIRKLHKVYAT-----KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
+++R + Y T + + ++ L++ E + + LLG +G GKST +L+GL
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 505 PTTGDALVFGKNIT----ADMDEIRKGLGVCPQ--YDILFPELTVREHL-EMFAVLKGVK 557
P G G+++ R+ + + Q + P +TVR+ + E L +
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 558 EELLESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E ++ +AE++D VGL ++ + + R LSGG +++++ AL K+++LDE S +D
Sbjct: 123 ESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
Query: 617 PYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ +L++K+++ G L TH + + R+A+M G +
Sbjct: 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 2e-18
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPT--TGDALVFGKNI---TA 519
AV + + EN + A++G +G GKST +I+ + L+P TG L+ +I
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLADKV 578
D IR+ +G+ Q FP +++ +++ L G V + +V + V L D+V
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 579 NIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 634
+++ LSGG +++L + + +V+++DEP S +DP S +LI+++K+
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY 198
Query: 635 IILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
I++ TH+M +A + D A G L CG +
Sbjct: 199 TIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231
|
Length = 252 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 10/207 (4%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA---LVFGKNITAD-MDE 523
A+N + ++ AL+GHNG+GKST ++ GL+ P V G +TA + +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 524 IRKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582
IR+ +G+ Q D F TV + + + V + +V +++ +VG+ D ++
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP 141
Query: 583 RALSGGMKRKLSL-GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLT 639
LSGG K+++++ GI + K++ILDE TS +DP +LI+K+KK ++
Sbjct: 142 ANLSGGQKQRVAIAGILAVE-PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200
Query: 640 THSMDEAEELGDRIAIMANGSLKCCGS 666
TH +DEA + D++ ++ +G L GS
Sbjct: 201 THDIDEA-NMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 5/173 (2%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1438
L+F++ AGE G NGAGKTT L +++G P G + G+ I++ ++ + + Y
Sbjct: 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80
Query: 1439 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498
+ LT E+L + R G + E L + L P LS G +R
Sbjct: 81 GHQPGIKTELTALENLHFWQRFHG---SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQR 137
Query: 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
++++A + P+ ILDEP T +D + +++ + + G V+LTTH
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG--IVLLTTH 188
|
Length = 209 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 3e-18
Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 26/231 (11%)
Query: 440 MKQQEVDGRC-IQIRKLHKVYATKRGNCCAVNSLQ---LTLYENQILALLGHNGAGKSTT 495
M+ + + R + K Y+ V L+ TL+ ++ ALLG NGAGKST
Sbjct: 1 MQTSDTTAPPLLCARSISKQYS-------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTL 53
Query: 496 ISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGV--CPQYDILFPELTVREHLEMFAVL 553
+ ++ G++PP +G + G LG+ PQ +LFP L+V+E++ +F +
Sbjct: 54 MKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENI-LFGLP 112
Query: 554 KGVK-EELLESVVAEMVDEVGL---ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609
K + ++ ++A + ++ L A + + R + ++ L+ DS+++ILD
Sbjct: 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR-------GLMRDSRILILD 165
Query: 610 EPTSGMDPYSM-RLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
EPT+ + P RL ++ + + +G I+ +H + E +L DRI++M +G
Sbjct: 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 3e-18
Identities = 66/204 (32%), Positives = 114/204 (55%), Gaps = 16/204 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIPP--TTGDALVFGKNIT 518
G+ AV ++ L + +NQI A +G +G GKST + + L LIP G GKN+
Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 519 A-DMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---EELLESVV--AEMVD 570
A D+D E+R+ +G+ Q FP+ ++ +++ A + G K +EL+E + A + D
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWD 139
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
EV DK+ +LSGG +++L + A+ +V+++DEP S +DP S +L+ ++
Sbjct: 140 EV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197
Query: 631 KKGRIILLTTHSMDEAEELGDRIA 654
K+ I++ TH+M +A + D A
Sbjct: 198 KEQYTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 4e-18
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 46/240 (19%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSL---TFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
++ ++NL+K +P GK K V ++ +FS++ GE G +G +G GK+T +I G E
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1411 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
PT G GKDI K RR + V E ++
Sbjct: 64 EPTSGEILFEGKDITKLSKEERR---------------------------ERVLEL-LEK 95
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V L E L ++ P LSGG ++++ +A A+ +P +++ DEP + +D + +
Sbjct: 96 V---GLPEEFLYRY---PHE-LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 1583
++ L G + +H ++ + + RI +M G++ IG P H T+
Sbjct: 149 LNLLKDLQEELG-LTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207
|
Length = 268 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 12/221 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I ++NL K + + + +V+ GE +G +G+GK+T L I+ E P
Sbjct: 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS 54
Query: 1415 GTAFIFGKDIRSDPKAARRL---IGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDD 1470
GT I G + D K L +G Q L +LTV E++ L +KG+++ ++
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE 114
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
+E L + L A LSGG ++++++A A+ +P +++ DEP++ +DP +
Sbjct: 115 RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV 174
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+V+ L+ +G T V++ TH M A+ + R+ M G++
Sbjct: 175 LDVMKDLA-EEGMTMVVV-THEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 5e-18
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1441
++Q GE +G +G GK+T L++ISG PT G + GK I ++P R ++ Q
Sbjct: 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDRMVVF---QN 62
Query: 1442 DALLEYLTVQEHLELY--ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499
+LL +LTV+E++ L + +++ +V E + L + A K LSGG K++
Sbjct: 63 YSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQR 122
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1559
+++A A+ P +++LDEP +D + + + E + ++ T V++ TH ++EA L
Sbjct: 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT-VLMVTHDVDEALLL 181
Query: 1560 CTRIGIMVGGQLRCIG 1575
R+ ++ G IG
Sbjct: 182 SDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 5e-18
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 1379 LTFSVQ--AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1436
+ F + GE +G +G+GK+T L++I+G E P G I G D+ + P A R +
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVS 73
Query: 1437 YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEK-LVEFDLLKHAKKPSFTLSGG 1495
Q + L +LTV++++ L G+ D +E L L K+ LSGG
Sbjct: 74 MLFQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGG 132
Query: 1496 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE 1555
++++++A ++ D P+++LDEP +DP + M +++ L T V++ TH +
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT-VLMVTHQPED 191
Query: 1556 AQALCTRI 1563
A+ L R+
Sbjct: 192 AKRLAQRV 199
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-18
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
+ L L + + +A++G +G+GKST + +L+GL P G L+ G ++ D+ +R+
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548
Query: 528 LGVCPQYDILFPELTVREHLEMFAV---LKGVKEELLESVVAEMVDEVGLADKVNIVVR- 583
+G Q LF ++RE++ + + + E + E ++ L + V
Sbjct: 549 VGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGE 605
Query: 584 ---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTT 640
LSGG +++L+L AL+ K+++LDE TS +DP + + Q + +I +GR +++
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665
Query: 641 HSMDEAEELGDRIAIMANG 659
H DRI ++ G
Sbjct: 666 HR-LSTIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-18
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 9/201 (4%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA--AR 1432
A+H ++ + GE +G NGAGKTT L + G+ T G GKDI A R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF--DLLKHAKKPSF 1490
+ P+ + +TV+E+L + +++ ++ + E L + + +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER---IKWVYELFPRLHERRIQRAG 136
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1550
T+SGG ++ L++ A++ P +++LDEPS G+ PI + +++ I +L R+ + L
Sbjct: 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL--REQGMTIFLVE 194
Query: 1551 HSMNEAQALCTRIGIMVGGQL 1571
+ N+A L R ++ G +
Sbjct: 195 QNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-18
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD---EI 524
A++ + L + + + L +LG NG+GKST + L+ P+ G V G + T+D + +I
Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD-TSDEENLWDI 83
Query: 525 RKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
R G+ Q D V E + G+ E + V E + +VG+ +
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH 143
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTH 641
LSGG K+++++ L + +I DEPT+ +DP R IK++ K G I+L TH
Sbjct: 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
Query: 642 SMDEAEELGDRIAIMANGSLKCCGS 666
M+EA E DRI +M +G + G+
Sbjct: 204 YMEEAVE-ADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 5e-18
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRK 526
++++ L + +++ ++G +G+GKST ++ P G LV G ++ AD +R+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 527 GLGVCPQYDILF------------PELTVREHLEMFAVLKGVKEELLESVVA--EMVDEV 572
+GV Q ++LF P +++ +E A L G + + E +V E
Sbjct: 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEA-AKLAGAHDFISELPEGYDTIVGEQ 135
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
G LSGG ++++++ ALI + +++I DE TS +D S + + I
Sbjct: 136 GAG---------LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA 186
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
GR +++ H + + DRI +M G + GS
Sbjct: 187 GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGS 219
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 5e-18
Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 22/177 (12%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPT--TGDALVFGKNITADMDEIRKGLGVCPQYDIL 537
+ILA+LG +G+GKST ++ L G I TG L + T +I K G Q DIL
Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT---KQILKRTGFVTQDDIL 151
Query: 538 FPELTVREHLEMFAVL-------KGVKEELLESVVAEMVDEVGLADKVNIVV-----RAL 585
+P LTVRE L ++L K K + ESV++E+ GL N ++ R +
Sbjct: 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL----GLTKCENTIIGNSFIRGI 207
Query: 586 SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS-MRLTWQLIKKIKKGRIILLTTH 641
SGG ++++S+ ++ + ++ILDEPTSG+D + RL L +KG+ I+ + H
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 5e-18
Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTT 507
+I+ LH G + + LT+ E ++ A++G NG+GKST ++G P T
Sbjct: 5 EIKDLH---VEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTE 60
Query: 508 GDALVFGKNITA-DMDE-IRKGLGVCPQYDILFPELTVREHL--EMFAVLKGVKEEL-LE 562
G+ L G++I DE R G+ + QY + P +T + L M A
Sbjct: 61 GEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFI 120
Query: 563 SVVAEMVDEVGLADK-----VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+ E + +GL ++ VN SGG K++ + L+ + K+ ILDEP SG+D
Sbjct: 121 KELKEKAELLGLDEEFLERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177
Query: 618 YSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELG-DRIAIMANGSLKCCG 665
++++ + I ++ +GR +L+ TH + + D++ ++ +G + G
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-18
Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 9/186 (4%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 524
+ L ++LALLG NGAGKST + L GL+ P +G L+ G+ + + E
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 525 RKGLGVC---PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 581
R+ +G+ P + V + + + G+ E +E V E + VG +
Sbjct: 67 RQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP 124
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTT 640
LSGG K+++++ A+ V++LDEPT+G+DP ++++++ +G ++++T
Sbjct: 125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184
Query: 641 HSMDEA 646
H +D A
Sbjct: 185 HDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-18
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 24/219 (10%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ + YPG + A+ ++F+V GE +G +GAGK+T L+++ G PT+
Sbjct: 322 LEFSGVSVAYPG-----RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G+ + G + D + R I + PQ L T+ E++ L ++ + + +
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP--DASDAEIREALE 433
Query: 1474 EKLVEFD-LLKHAKKPSFT--------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
D + + T LSGG ++L++A A + D P+++LDEP+ +D
Sbjct: 434 --RAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
+ + E + L+ QG+T V+L TH + A AL RI
Sbjct: 492 ETEAEVLEALRALA--QGRT-VLLVTHRLALA-ALADRI 526
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 8/186 (4%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILF 538
+ +A++G GAGK+T I++L+ P G L+ G +I +R +GV Q LF
Sbjct: 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLF 89
Query: 539 PELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-----GLADKVNIVVRALSGGMKRKL 593
T+ E++ + +E + + A D + G + LS G ++ L
Sbjct: 90 SG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLL 148
Query: 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI 653
++ A++ D K++ILDE TS +D + +L + ++K+ KGR ++ H + + D+I
Sbjct: 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKI 207
Query: 654 AIMANG 659
++ +G
Sbjct: 208 LVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 6e-18
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 35/210 (16%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP- 532
TL I AL G +G+GK++ I+M+ GL P G + G+ + D KG+ + P
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV-DA---EKGIFLPPE 74
Query: 533 --------QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA 584
Q LFP TVR +L + + K ++ + ++V +G+ ++
Sbjct: 75 KRRIGYVFQDARLFPHYTVRGNLR-YGMWKSMRAQF-----DQLVALLGIEHLLDRYPGT 128
Query: 585 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMD--------PYSMRLTWQLIKKIKKGRI- 635
LSGG K+++++G AL+ +++++DEP + +D PY RL + I
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR-------DEINIP 181
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
IL +HS+DE L DR+ ++ NG +K G
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-18
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1428
+ ++ V + + G G LG NG+GK+T L +++G P GT + G D+
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 1429 KAAR-RLIGYCPQFDALLEYLTVQE--------HLELYARIKGVAEYRMDD-VVMEKLVE 1478
+ AR R + Q LTV++ H L+A + D VV L
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWA-----GDSPHDAAVVDRALAR 124
Query: 1479 FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
+L A + TLSGG ++++ VA A+ +P +++LDEP+ +D + + E ++ +
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD-VRAQL--ETLALVR 181
Query: 1539 TRQG-KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
V+ H +N A + C + ++ GG++ G P+ + T
Sbjct: 182 ELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 7e-18
Identities = 57/217 (26%), Positives = 113/217 (52%), Gaps = 11/217 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ +L+ Y+ A+ + + + + ++ A+LG NGAGKST L G++ P++G
Sbjct: 6 LKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62
Query: 510 ALVFGKNI---TADMDEIRKGLGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESV 564
L GK I + ++R+ +G+ Q + LF +V + + AV + E+ +
Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
V + G+ + LS G K+++++ L+ + KV++LDEPT+G+DP +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 625 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+L+ +++K G I++ TH +D D + +M G
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 8e-18
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 29/247 (11%)
Query: 445 VDGRCIQIRKLHKVYATKRGN-CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 503
D ++++ L+ V+ K+ N A+N++ T +N+I ++G++G+GKST ++ GLI
Sbjct: 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76
Query: 504 PPTTGDALVFGKNITADMD-----------------EIRKGLGVCPQYDILFPEL----- 541
G V I + E+R+ + + Q FPE
Sbjct: 77 KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKD 132
Query: 542 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALI 600
T+ + + V GVK+ + + ++++GL D + LSGG KR++++ L
Sbjct: 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
+++I DEPT+G+DP QLI K + + + TH+M+ E+ D + +M G
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
Query: 660 SLKCCGS 666
+ G+
Sbjct: 253 KILKTGT 259
|
Length = 320 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 8e-18
Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 21/212 (9%)
Query: 467 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIR 525
+ L L + + +ALLG G GKST + +L P G+ L+ G+ I +R
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413
Query: 526 KGLGVCPQYDILFPELTVREHL----------EMFAVLKGVK-EELLESVVAEMVDEVGL 574
+ + V Q LF T+R++L + VL+ V E+LLE D+ GL
Sbjct: 414 QAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQVGLEKLLE-------DDKGL 465
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 634
+ R LSGG +R+L + AL+ D+ +++LDEPT G+D + R +L+ + + +
Sbjct: 466 NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK 525
Query: 635 IILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+L+ TH + E+ DRI +M NG + G+
Sbjct: 526 TVLMITHRLTGLEQF-DRICVMDNGQIIEQGT 556
|
Length = 574 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 9e-18
Identities = 56/212 (26%), Positives = 109/212 (51%), Gaps = 10/212 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+QI L+ Y K A+ + LTL ++L +LG +G GK+T ++++ G +P G
Sbjct: 2 LQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ GK + E GV Q + L P V++++ L GV++ + +M+
Sbjct: 58 ITLDGKPVEGPGAE----RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+VGL + LSGG ++++ + AL + ++++LDEP +D ++ L+ K
Sbjct: 114 KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ + G+ +LL TH ++EA + + +++ G
Sbjct: 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 9e-18
Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 18/219 (8%)
Query: 461 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT- 518
TKR G ++ L ++ + +AL+G +G+GKST + +L+ L P G V G+ +
Sbjct: 7 TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH 66
Query: 519 ----------AD---MDEIRKGLGVCPQYDILFPELTVREHLEMFAVL-KGVKEELLESV 564
AD + ++R +G+ Q LFP TV +++ VL G+ E
Sbjct: 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR 126
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
E++D VGLADK + + LSGG ++++++ AL KV++ DE TS +DP +
Sbjct: 127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 625 QLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+I+++ + +LL TH M A E DR+ G +
Sbjct: 187 NVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 58/192 (30%), Positives = 106/192 (55%), Gaps = 8/192 (4%)
Query: 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDEIR-KGLGVCP 532
E +++A++G +G+GKST + +L GL PT+GD + G+ + +A E+R + LG
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIY 93
Query: 533 QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 592
Q+ L P+ T E++ M ++ K + S EM+ VGL + N LSGG +++
Sbjct: 94 QFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQR 153
Query: 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELG 650
+++ AL+ + ++V+ DEPT +D + +QL+ ++ +G L+ TH + A+ +
Sbjct: 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM- 212
Query: 651 DRIAIMANGSLK 662
R M +G L
Sbjct: 213 SRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 41/197 (20%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ + N+ YP + + +L+ ++ GE LG +G+GK+T L +++G+ P
Sbjct: 1 LSINNVSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ 56
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G + G + KA LI Q + +L D +
Sbjct: 57 GEITLDGVPVSDLEKALSSLISVLNQ----------RPYL-------------FDTTLRN 93
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L SGG +++L++A ++ D PIV+LDEP+ G+DPI +R + +I
Sbjct: 94 NLGR------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1535 SRLSTRQGKTAVILTTH 1551
+ KT + +T H
Sbjct: 142 --FEVLKDKTLIWITHH 156
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-17
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 11/209 (5%)
Query: 1381 FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCP 1439
SV+ G G +G NGAGKTT L I+G PT GT + G D+ + +AA R + P
Sbjct: 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83
Query: 1440 QFDALLEYLTVQEHLEL-----YARIKGVAEYRMDDVVMEKLVE-FDLLKHAKKPSFTLS 1493
Q +L V++ +E+ +R E D +E+ +E + + A +P +LS
Sbjct: 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE--TDRAAVERAMERTGVAQFADRPVTSLS 141
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1553
GG ++++ +A A+ P+++LDEP+ +D + E++ RL GKTAV H +
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL-VDDGKTAVA-AIHDL 199
Query: 1554 NEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
+ A C + ++ G++R G P + T
Sbjct: 200 DLAARYCDELVLLADGRVRAAGPPADVLT 228
|
Length = 402 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 1e-17
Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 24/228 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 505
++++ L Y KR AVN + + + ++ + AL+G +G GKST +I+ + LIP
Sbjct: 22 LEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77
Query: 506 -TTGDALVFGKNITAD---MDEIRKGLGVCPQYDILFPELTVRE--HLEMFA------VL 553
+ G+ L G NI + +R+ +G+ Q FP+ H +A VL
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137
Query: 554 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
+ EE L A + DEV D+++ +LSGG +++L + L V++LDEP S
Sbjct: 138 DEIVEESLTK--AALWDEV--KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+DP S +LI ++K+ I++ TH+M +A + DR A NG L
Sbjct: 194 ALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-17
Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 23/231 (9%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEY 1411
II + N Y K AV ++T + + +G +G GKTT L I+ +
Sbjct: 3 IIEIENFSAYY------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 1412 P---TDGTAFIFGKDI---RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-A 1464
P +G + G+DI + D R+ +G Q +++ +++ RI GV +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKS 115
Query: 1465 EYRMDDVVMEKLVE---FDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
++++D +V E L + +D +K KP LSGG +++L +A A+ +P +++LDEP++
Sbjct: 116 KHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+DPIA + + +++ LS +++ TH++ +A + I M G+L
Sbjct: 176 ALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 11/195 (5%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430
D + L+F++ AGE G NG+GKTT L +++G P G + G + +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1490
R + Y + L+V E+L + D+ V E L L +P
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVA 124
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA-KRFMWEVISRLSTRQGKTAVILT 1549
LS G +R++++A ++ P+ ILDEP+T +D RF + V+LT
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC---ARGGMVVLT 181
Query: 1550 TH-SMNEAQALCTRI 1563
TH + ++A +
Sbjct: 182 THQDLGLSEAGAREL 196
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 39/212 (18%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITA-DMDEI-RKGL 528
LT+ + ++ AL+G NG+GKST ++G P T G+ L G++IT +E R G+
Sbjct: 21 LTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEILFKGEDITDLPPEERARLGI 79
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 588
+ QY P + + L+ V E SGG
Sbjct: 80 FLAFQYPPEIPGVKNAD------FLRYVNE-------------------------GFSGG 108
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAE 647
K++ + L+ + + ILDEP SG+D ++RL ++I K++ +G+ +L+ TH +
Sbjct: 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168
Query: 648 EL-GDRIAIMANGSLKCCGSSLFLKHQYGVGY 678
+ DR+ ++ +G + G GY
Sbjct: 169 YIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-17
Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI-----RK 526
TL + A+ G +G+GK+T I ++ GL P G+ ++ G+ + I ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
+G Q LFP L+VR +L +K + +++ +G+ + + LS
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYG--MKRARPSERRISFERVIELLGIGHLLGRLPGRLS 133
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMD--------PYSMRLTWQLIKKIKKGRI-IL 637
GG K+++++G AL+ +++++DEP + +D PY RL + I IL
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-------GIPIL 186
Query: 638 LTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+HS+ E L DR+ ++ +G + G
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 59/213 (27%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDE 523
V L L+L ++LAL+G +G+GKS T ++GL+PP T+G+ L+ G+ +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP--LS 58
Query: 524 IRKGLGVC-----PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 578
IR G + P+ P T+ H G + +++ E ++ VGL D
Sbjct: 59 IR-GRHIATIMQNPR-TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPE 116
Query: 579 NIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--G 633
++ + LSGGM +++ + +AL+ + +I DEPT+ +D + +L++++++ G
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176
Query: 634 RIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
ILL TH + + D +A+M +G + G+
Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 3e-17
Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 1353 AIIYLRNLRKVYPGG----KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1408
+++ +R++ Y G + A V + +++ S++ GE G LG +G GK+T ++ G
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPV-LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59
Query: 1409 EEYPTDGTAFIFGKDI----RSDPKAARRLIGYCPQ--FDALLEYLTVQ----EHLELYA 1458
E P GT G+D+ R +A RR + Q A+ +TV+ E L
Sbjct: 60 LEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT 119
Query: 1459 RIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
+ E + E L L + A K LSGG +++++A A+ P +++LDE
Sbjct: 120 SLD---ESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ +D + + + E++ +L G TA + TH + Q+ C R+ +M GQ+
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFG-TAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 11/234 (4%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
N +I +N+ Y + S K+A+ + V+ GE LG NG+GK+T ++
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 1411 YPTDGTAFIFGKDIRSDPKAA---RRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEY 1466
P++G ++ G D SD + R G Q D + V+E + G+
Sbjct: 61 IPSEGKVYVDGLDT-SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE 119
Query: 1467 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDP 1524
+ + V E L + + ++ + LSGG K+++++A +AM P +I DEP+ +DP
Sbjct: 120 EIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDP 177
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+R + I L+ + G T +IL TH M EA RI +M G++ G+P+
Sbjct: 178 SGRREVVNTIKELNKKYGIT-IILITHYMEEA-VEADRIIVMDSGKVVMEGTPK 229
|
Length = 280 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 3e-17
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR + + +L +++ G LG +G GKTT L +++G E PT+G FI G+D+ +
Sbjct: 14 KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV-TH 72
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
+R I Q AL ++++ E++ ++ GV + V E L DL +
Sbjct: 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR 132
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
+SGG ++++++A A+I P +++ DEP + +D +R M E I L + T+ +
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITS-L 191
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
TH +EA A+ + +M G++ IGSPQ L
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 9/200 (4%)
Query: 1360 LRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1419
L+ V G + +++++FS++AGE G +G GK+T L +++ PT GT
Sbjct: 10 LQNV---GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66
Query: 1420 FGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1478
G+DI + P+ R+ + YC Q L TV ++L +I+ + ++ L
Sbjct: 67 EGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDP--AIFLDDLER 123
Query: 1479 FDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
F L K LSGG K+++S+ + P +++LDE ++ +D K + E+I R
Sbjct: 124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183
Query: 1538 STRQGKTAVILTTHSMNEAQ 1557
R+ AV+ TH +E
Sbjct: 184 -VREQNIAVLWVTHDKDEIN 202
|
Length = 225 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLT---FSVQAGECFGFLGTNGAGKTTTLSMISGE 1409
II + +L K G+ + L V+ GE +G +G+GK+T L++++G
Sbjct: 5 NIIEVHHLSKTVGQGEGE-----LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL 59
Query: 1410 EYPTDGTAFIFGKDIRS---DPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVA 1464
+ P+ G + G+ + D +AA R +G+ Q L+ LT E++ L ++G +
Sbjct: 60 DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES 119
Query: 1465 EYRMDDVVMEKLVEFDL---LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
L L L H LSGG ++++++A A G P ++ DEP+
Sbjct: 120 SADSRAGAKALLEAVGLGKRLTHYPA---QLSGGEQQRVALARAFAGRPDVLFADEPTGN 176
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+D + +++ L+ +G T ++L TH A A C R + G+L
Sbjct: 177 LDRATGDKIADLLFALNRERG-TTLVLVTHDPQLA-ARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-17
Identities = 69/240 (28%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIPPT- 506
++ KL+ Y G A+ ++ + ++E Q+ AL+G +G GKST + + + L P
Sbjct: 18 EVNKLNFYY----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH 73
Query: 507 -TGDALVFGKNI-----TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--- 557
G+ ++ N+ D E+R + + Q FP+ ++ E++ ++GVK
Sbjct: 74 YEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRS 132
Query: 558 --EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
EE +E+ + A + DEV D++ + LSGG +++L + AL D ++++ DEPTS
Sbjct: 133 ILEERVENALRNAALWDEV--KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTS 190
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS--LFLK 671
+DP + +LI +K IL+ TH+M +A + D A M G L G++ +F+K
Sbjct: 191 ALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250
|
Length = 265 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 4e-17
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSDPKAA 1431
AV ++F V+AGE G G G G++ + ISG P G + GKD+ R P+
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 1432 RRL-IGYCP---QFDALLEYLTVQEHLEL-------YARIKGVAEYRMDDVVMEKLVEFD 1480
RRL + Y P L+ L++ E+L L ++R + + E + EFD
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFD 391
Query: 1481 LLKHAKK-PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
+ + P+ +LSGGN++KL +A + P ++I +P+ G+D A F+ E + L
Sbjct: 392 VRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL--LEL 449
Query: 1540 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
R AV+L + ++E L RI ++ G++ I P+
Sbjct: 450 RDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488
|
Length = 501 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-17
Identities = 50/197 (25%), Positives = 101/197 (51%), Gaps = 7/197 (3%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 527
+N++ L++ + +A+ G +G GKST + ++ LI PT+G L G+++ T + R+
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALS 586
+ C Q LF + TV ++L ++ + + + +++ L D + + LS
Sbjct: 79 VSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD--RAAALDLLARFALPDSILTKNITELS 135
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMD 644
GG K++++L L K+++LDE TS +D + R ++I + ++ +L TH D
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
Query: 645 EAEELGDRIAIMANGSL 661
+A D++ + G
Sbjct: 196 QAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 20/246 (8%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L + Y A A+ +T GE LG +GAGK++ L +++ E P
Sbjct: 3 IQLNGINCFY------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56
Query: 1415 GTAFIFGK--DIRSDP--KAARRL---IGYCPQFDALLEYLTVQEHL-ELYARIKGVAEY 1466
GT I G D P KA R L +G Q L +LTVQE+L E R+ G+++
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD 116
Query: 1467 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
+ + L L +A + LSGG ++++++A A++ +P +++ DEP+ +DP
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---KT- 1582
+ +I L+ G T VI+ TH + A+ +R+ M G + G +T
Sbjct: 177 TAQIVSIIKELA-ETGITQVIV-THEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTE 234
Query: 1583 RFGNFL 1588
F N+L
Sbjct: 235 AFKNYL 240
|
Length = 242 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-17
Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I I + K Y TK ++ + L + + I +++G NGAGKST +SM+ L+ +G+
Sbjct: 2 ITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57
Query: 510 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL---KGVKEELLESVV 565
+ G +T+ E+ K L + Q + + LTVR+ L F +G + ++
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD-LVGFGRFPYSQGRLTKEDRRII 116
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS----MR 621
E ++ + L D + + LSGG +++ + + L D+ V+LDEP + +D M+
Sbjct: 117 NEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 622 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ +L ++ K +++L H ++ A D I + NG +
Sbjct: 177 ILRRLADELGKTIVVVL--HDINFASCYSDHIVALKNGKV 214
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 5e-17
Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 12/201 (5%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRKGLGVC 531
T+ +IL + G GAG++ L G P ++G+ L+ GK + D I+ G+
Sbjct: 280 FTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYV 339
Query: 532 P---QYDILFPELTVRE-----HLEMFAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVV 582
P + + L ++++ E L F+ + ++ + + + +
Sbjct: 340 PEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH 641
LSGG ++K+ L L D KV+ILDEPT G+D + ++LI+++ +G+ IL+ +
Sbjct: 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISS 459
Query: 642 SMDEAEELGDRIAIMANGSLK 662
+ E L DRI +M G +
Sbjct: 460 ELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-17
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 14/216 (6%)
Query: 460 ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 519
+ + G+ ++ + L++ E ++ L+G NGAGK+T + + G + PT G LV G ++ A
Sbjct: 10 SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69
Query: 520 -DMDEIRKGLGVCPQYDILFPELTVREHLEM--------FAVLKGVKEELLESVVAEMVD 570
+ + PQ L E VR+ +EM F E + V ++
Sbjct: 70 LSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW----TETDRAAVERAME 125
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK- 629
G+A + V +LSGG ++++ L AL + V++LDEPT+ +D T +L+++
Sbjct: 126 RTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185
Query: 630 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
+ G+ + H +D A D + ++A+G ++ G
Sbjct: 186 VDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-17
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 25/262 (9%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
LRN+ K Y D ++ + + GE F+G +G GK+T L MI+G E T G
Sbjct: 6 LRNVTKAY-----GDVVISKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 1417 AFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKL 1476
FI K + +D A R +G Q AL +L+V E++ ++ G + ++ V ++
Sbjct: 60 LFIGEKRM-NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRV-NQV 117
Query: 1477 VEFDLLKH--AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
E L H +KP LSGG ++++++ ++ +P + +LDEP + +D + M I
Sbjct: 118 AEVLQLAHLLDRKPK-ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 176
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF------ 1584
SRL R G+T +I TH EA L +I ++ G++ +G P L RF
Sbjct: 177 SRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235
Query: 1585 ---GNFLELEVKPTEVSSVDLE 1603
NFL ++V T + V +E
Sbjct: 236 SPKMNFLPVKVTATAIEQVQVE 257
|
Length = 369 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADM 521
G AVN++ L + E +I++L+G NGAGK+T + L G PT G L+ G++I
Sbjct: 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEMFA--------VLKGV---------KEELLESV 564
R G+ Q+ LF E+TV E+L + A + G+ + E L+
Sbjct: 76 QIARMGVVRTFQHVRLFREMTVIENL-LVAQHQQLKTGLFSGLLKTPAFRRAESEALDR- 133
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
A ++ VGL + N L+ G +R+L + ++ ++++LDEP +G++P +
Sbjct: 134 AATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 625 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+LI +++ +LL H M + DRI ++ G
Sbjct: 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 6e-17
Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 16/212 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI-----PPTTGDALVFGKNI- 517
G ++ + L + +N I AL+G +G+GKST + + LI +G+ + G++I
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 518 TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV---KEELLESV-----VAEMV 569
D+ E+R+ + + Q P L++ E++ + L + K+EL E V A++
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW 133
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
DEV D+++ LSGG +++L + AL +V++ DEPT+ +DP + L +
Sbjct: 134 DEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 630 IKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+KK I+L TH +A + D +A + G +
Sbjct: 192 LKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
Length = 250 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 7e-17
Identities = 60/209 (28%), Positives = 115/209 (55%), Gaps = 14/209 (6%)
Query: 461 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT- 518
+K G ++++ L + + +++ ++G +G+GKST + + L T+GD +V G +
Sbjct: 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND 67
Query: 519 --ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK--GVKEELLESVVAEMVDEVGL 574
D IR+ G+ Q LFP LT E++ MF L+ G +E E E++ +VGL
Sbjct: 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENV-MFGPLRVRGASKEEAEKQARELLAKVGL 126
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--- 631
A++ + LSGG ++++++ AL K+++ DEPTS +DP L +++K ++
Sbjct: 127 AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP---ELRHEVLKVMQDLA 183
Query: 632 -KGRIILLTTHSMDEAEELGDRIAIMANG 659
+G +++ TH + AE++ R+ + G
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKG 212
|
Length = 240 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 8e-17
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS----- 1426
+ A++ + S+ +G +G G+GK+T L ++G PT GT I + I +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 1427 DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLV--EF 1479
K R+ +G QF + L TV++ + GV A+ + +++ +LV
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMI--ELVGLPE 136
Query: 1480 DLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
+LL A+ P F LSGG R++++A +AM +P +++LDEP+ G+DP ++ M E+ +L
Sbjct: 137 ELL--ARSP-FELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191
Query: 1538 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+G T +L THSM +A +I +M G + G+P+ +
Sbjct: 192 HKEKGLT-TVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 9e-17
Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 24/224 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST------TISMLVGLI 503
I+++ L Y T + A+ + + +Y N++ A++G +G GKST IS L G +
Sbjct: 8 IKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 504 PPTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--- 557
G FG+NI +++ +R+ +G+ Q FP +++ E++ +
Sbjct: 64 K-VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQA 121
Query: 558 --EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
+E++ES + A + EV DK+N LSGG +++L + AL KV+++DEP S
Sbjct: 122 DLDEIVESALKGAALWQEV--KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA 657
+DP + +LI ++ I + TH+M +A + D A +
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223
|
Length = 259 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-16
Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 58/244 (23%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++I L NL Y + + +++ ++ GE G +G NGAGK+T L +++GE P
Sbjct: 2 SMITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP 55
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G PK R +GY Q L TV +++ +++
Sbjct: 56 DSGEVTR--------PKGLR--VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEA- 104
Query: 1473 MEKLVEFDLLKHAK------------------------------KPSFTLSGGNKRKLSV 1502
L + D A+ +P +LSGG +R++++
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVAL 164
Query: 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS---MNEAQAL 1559
A A++ +P +++LDEP+ +D + W + L G VI+ +H ++ +
Sbjct: 165 ARALLEEPDLLLLDEPTNHLD-LESI-EW-LEDYLKRYPG--TVIVVSHDRYFLDN---V 216
Query: 1560 CTRI 1563
T I
Sbjct: 217 ATHI 220
|
Length = 530 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P 1412
I +N+ YP R D + + L+ ++ G+ +G++G GK+T +S++ E + P
Sbjct: 1 IEFKNVSFRYP--SRPDVPI-LKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDP 55
Query: 1413 TDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM--- 1468
T G + G DIR + + R IG Q + +L T+ E++ Y + E
Sbjct: 56 TSGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENI-RYGKPDATDEEVEEAA 113
Query: 1469 -----DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
D +M +D L + LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 114 KKANIHDFIMSLPDGYDTLVGER--GSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGIMVGGQLRCIGSPQ 1578
+++ + E + R +G+T +++ A L T I ++ GQ+ G+
Sbjct: 172 AESEKLVQEALDRA--MKGRTTIVI-------AHRLSTIRNADLIAVLQNGQVVEQGTHD 222
Query: 1579 HLKTRFGNFLEL 1590
L + G + +L
Sbjct: 223 ELMAQKGVYAKL 234
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
L TL +++ + G NGAGK++ + +L GL P G+ L G+ I DE
Sbjct: 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-------- 71
Query: 532 PQYDILF--------PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
D+L+ ELT E+L + L G + + E + +VGLA ++ VR
Sbjct: 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPVR 128
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM-RLTWQLIKKIKKGRIILLTTH 641
LS G +R+++L + + + ILDEP + +D + RL L + ++G +++LTTH
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (200), Expect = 2e-16
Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 16/275 (5%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--E 1409
N I+ + NL V+ K SD ++ ++FS+ GE +G NG+GK+TT +I G E
Sbjct: 2 NKILEVENL--VFKYEKESDVN-QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58
Query: 1410 EYPTDGTAFIFGKDIRSDPK-AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYR 1467
E+ +G I G+ + ++ RR IG Q D TV++ + +G+
Sbjct: 59 EF--EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREE 116
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
M V E L+ ++L + LSGG K++++VA + P I+ILDE ++ +DP +
Sbjct: 117 MIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587
+ + VI + + T V+ TH ++EA A RI +M G++ +P L +
Sbjct: 177 QEIMRVIHEIKEKYQLT-VLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFATSEDM 234
Query: 1588 LELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRS 1622
+E+ + SS ++DL ++ FD+P + S
Sbjct: 235 VEIGLD-VPFSSNLMKDL----RKNGFDLPEKYLS 264
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-- 519
K G+ ++ L LT+ + ++ A++G +G+GKST ++++ L +G + G+
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLN 66
Query: 520 ---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL----KGVKEELLESVVAEMVDEV 572
R+ LG Q L TV E+L++ K K E + E +++V
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKK----EALEKV 122
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
GL K+ + LSGG +++++L A++ +++ DEPT +DP + L+ ++
Sbjct: 123 GLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND 182
Query: 633 -GRIILLTTHSMDEAEELGDRI 653
G+ I++ TH E + DR+
Sbjct: 183 EGKTIIIVTHDP-EVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
LRN+ PG + +H L+ + AG+ G +G NG+GK+T L M+ + P++G
Sbjct: 14 LRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE 67
Query: 1417 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDD--V 1471
+ + + S KA R + Y PQ E +TV+E + + Y + + D
Sbjct: 68 ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK 127
Query: 1472 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-M 1530
V E + L A + +LSGG +++ +A+ + D ++LDEP++ +D IA + +
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IAHQVDV 186
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
++ RLS +G T VI H +N A C + + GG++ G+P L
Sbjct: 187 LALVHRLSQERGLT-VIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 8/203 (3%)
Query: 460 ATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKN 516
+ + C + ++ T+ + +I+ L+G +G GKST +S ++G + TG+ + +
Sbjct: 9 SLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR 68
Query: 517 ITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD 576
+ + ++ +G+ Q +LFP L+V ++L +FA+ +K + ++ GL
Sbjct: 69 LDM-LPAAQRQIGILFQDALLFPHLSVGQNL-LFALPATLKGNARRNAANAALERSGLDG 126
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI--KKIKKGR 634
+ LSGG + +++L AL+ K ++LDEP S +D Q + + G
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 635 IILLTTHSMDEAEELGDRIAIMA 657
+ TH + + G R+ MA
Sbjct: 187 PTVQVTHDLQDV-PAGSRVIEMA 208
|
Length = 213 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 4e-16
Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L+N+ Y G + + A+ + +++ G F+G G+GK+T + +++G PT
Sbjct: 3 INLQNVSYTYQAGTPFEGR-ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 1415 GTAFIFGKDIRS-----DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRM 1468
G+ + I S D K R+ +G QF ++ L TV + + + GV++
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 1469 DDVVMEKL----VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
+ + EKL + L + K P F LSGG R++++A + +P I++LDEP+ G+DP
Sbjct: 122 EALAREKLALVGISESLFE--KNP-FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584
++ + + +L Q ++L TH M++ + ++ G+L G P K F
Sbjct: 179 KGRKELMTLFKKL--HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP---KDIF 233
Query: 1585 GNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPS 1618
+ LE K V + Q + +R S
Sbjct: 234 QDVDFLEEKQLGVPKI--TKFAQRLADRGISFSS 265
|
Length = 280 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 4e-16
Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 443 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLV-- 500
Q V I++ L+ Y K+ A+ ++ + + +N + AL+G +G GKST I L
Sbjct: 6 QNVAQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61
Query: 501 -GLIPP--TTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK 554
LI G + G++I D+ E+RK +G+ Q FP +++ +++ +
Sbjct: 62 NDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH 120
Query: 555 GVKEELLESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608
G ++ L+ VV A + DE +D++ +LSGG +++L + L K+++
Sbjct: 121 GANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILF 178
Query: 609 DEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
DEPTS +DP S LI +KK I++ TH+M +A + D G L
Sbjct: 179 DEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGEL 231
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (200), Expect = 4e-16
Identities = 62/241 (25%), Positives = 121/241 (50%), Gaps = 16/241 (6%)
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TI 496
+K+ +IR + Y + + ++ L L + N++ A +G +G GKST +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
Query: 497 SMLVGLIPPTT--GDALVFGKNITADMD---EIRKGLGVCPQYDILFPELTVREHLEMFA 551
+ L LI T+ G+ G N + E+R +G+ Q F E+++ +++
Sbjct: 129 NQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP 187
Query: 552 VLKGVKE-ELLESVVAEMVDEVGLADKV----NIVVRALSGGMKRKLSLGIALIGDSKVV 606
G+ + ++LE +V + + L D+V + ALSGG +++L + A+ + +V+
Sbjct: 188 RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVL 247
Query: 607 ILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
++DEPTS +DP + +LI ++KK I++ THSM +A+ + D G ++ G
Sbjct: 248 LMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307
Query: 667 S 667
+
Sbjct: 308 T 308
|
Length = 329 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 4e-16
Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 30/231 (12%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ LHK Y + + L +++++G +G+GKST + + L P+ G
Sbjct: 7 LEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 510 ALVFGKNITADMDE--------------IRKGLGVCPQYDILFPELTVREHLEMFA---V 552
V G+ I D+ +R LG+ Q+ L+ +TV E++ + A V
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-IEAPVHV 121
Query: 553 LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPT 612
L K E +E + +VG+A+K + LSGG ++++++ AL + +V++ DEPT
Sbjct: 122 LGVSKAEAIERAEK-YLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180
Query: 613 SGMDPYSMRLTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 659
S +DP L +++K ++ GR +++ TH M A ++ + + G
Sbjct: 181 SALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG 228
|
Length = 256 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 25/226 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ L K + + ++ + L + +++A++G +G+GK+T + + L P G
Sbjct: 4 IEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59
Query: 510 ALVFGKNITADMD-----------EIRKGLGVCPQYDILFPELTVREH-LEMFAVLKGVK 557
V +IT D ++R+ +G Q LFP TV E+ +E ++KG
Sbjct: 60 IRV--GDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEP 117
Query: 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+E + E++ +VGLA K R LSGG ++++++ AL +V++ DEPTS +DP
Sbjct: 118 KEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP 177
Query: 618 YSMRLTWQLIKKIK----KGRIILLTTHSMDEAEELGDRIAIMANG 659
L +++ I+ + R +++ TH M A ++ DR M G
Sbjct: 178 ---ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEI 524
V+ + LTL ++LAL+G +G+GKS T + +G++P T G L+ GK +
Sbjct: 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRG 78
Query: 525 RKGLGVCPQYDILF-PELTVREH-LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582
RK + F P T+ H E + + ++ + ++ VGL + ++
Sbjct: 79 RKIATIMQNPRSAFNPLHTMHTHARE---TCLALGKPADDATLTAALEAVGLENAARVLK 135
Query: 583 R---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIIL 637
+SGGM +++ + +AL+ ++ +I DEPT+ +D + L++ I K+ +L
Sbjct: 136 LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGML 195
Query: 638 LTTHSMDEAEELGDRIAIMANGSLKCCGS--SLFLKHQYGVGYTLTLVKSAPDASAAADI 695
L TH M L D +A+M++G + G +LF +AP + +
Sbjct: 196 LVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF---------------NAPKHAVTRSL 240
Query: 696 VYRHIPSALCVSE 708
V H+ AL E
Sbjct: 241 VSAHL--ALYGME 251
|
Length = 254 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-16
Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 10/211 (4%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK-----AARR 1433
F++ G +G+GKTT + +I+G P +G + G+ + K +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTL 1492
IGY Q L +L+V+ +L Y + R + E+++E + H + L
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLR-YGMKRARPSER--RISFERVIELLGIGHLLGRLPGRL 132
Query: 1493 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
SGG K+++++ A++ P ++++DEP +D K + + RL + ++ +HS
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH-AEFGIPILYVSHS 191
Query: 1553 MNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+ E L R+ ++ G++ G +
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 6e-16
Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
IQ+ ++ Y + A+ + L E + L LLG +GAGKS+ + +L L P +G
Sbjct: 3 IQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 510 ALVFGK--NITADMDE-----IRKGLGVCPQYDILFPELTVREHL-EMFAVLKGVKEELL 561
+ G + + + +R+ +G+ Q L+P LTV+E+L E + G+ ++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA 118
Query: 562 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
+ +++ + L + LSGG ++++++ AL+ + +V++ DEPT+ +DP
Sbjct: 119 LARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP---E 175
Query: 622 LTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 659
+T Q++ IK+ G ++ TH ++ A + R+ M NG
Sbjct: 176 ITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 6e-16
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 1377 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1436
L+F++ AGE G NGAGKT+ L +++G P G G+ IR + +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 1437 YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN 1496
Y + LT E+L Y R+ G + D+ + E L + L P LS G
Sbjct: 78 YLGHQPGIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVRQLSAGQ 134
Query: 1497 KRKLSVAIA--MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS--TRQGKTAVILTTH 1551
+R+ VA+A + P+ ILDEP T +D K+ + + + L+ QG VILTTH
Sbjct: 135 QRR--VALARLWLTRAPLWILDEPFTAID---KQGVARLEALLAQHAEQGGM-VILTTH 187
|
Length = 204 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 6e-16
Identities = 61/212 (28%), Positives = 114/212 (53%), Gaps = 15/212 (7%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IPPTTGDALVFGKNI-TADMDE 523
A+ + + + +N+I AL+G +G GKST + + I G + GK++ D+
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 524 IRKGLGVCPQYDILFPELTVREHL----EMFAVLKGVKEELLESVVAEMVDEVGL----A 575
+RK +G+ Q +F + ++ E++ ++ ++K EE E++V + + +VGL
Sbjct: 77 LRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVK 133
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635
DK+ ALSGG +++L + AL K+++LDEPTS +DP S + +L+K++
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
+++ TH+M + + + D A G L G S
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIEFGES 225
|
Length = 246 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 7e-16
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 11/210 (5%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARR 1433
A+ S+ +V GE LG NGAGK+T + ++SG PT GT I + + D K A +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79
Query: 1434 L-IGYCPQFDALLEYLTVQEHL----ELYARIKGV--AEYR-MDDVVMEKLVEFDLLKHA 1485
L IG Q ++++ LTV E+L L ++ GV ++R M L+ L
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545
+ LS +K+ L +A ++ D ++I+DEP++ + +++ ++++L R+ TA
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL--RKEGTA 197
Query: 1546 VILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
++ +H + E + +C R +M G C G
Sbjct: 198 IVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 9e-16
Identities = 59/208 (28%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNI---TAD 520
+ ++ L + +N + AL+G +G GKST T++ + LIP G + G +I D
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMV------DEVG 573
+ E+RK +G+ Q FP+ ++ +++ + G +E +E V E + DEV
Sbjct: 79 VVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV- 136
Query: 574 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 633
DK++ LSGG +++L + + +V+++DEP S +DP S LI K+K+
Sbjct: 137 -KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED 195
Query: 634 RIILLTTHSMDEAEELGDRIAIMANGSL 661
I++ TH+M +A + + NG +
Sbjct: 196 YTIVIVTHNMQQATRVSKYTSFFLNGEI 223
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 1e-15
Identities = 55/230 (23%), Positives = 112/230 (48%), Gaps = 15/230 (6%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM------ISGEEYPTDGTAFIFGKDI 1424
+ K + +T + FG +G +G+GK+T L + I + DG FGKDI
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 1425 -RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLL 1482
+ D R+ +G Q +L++ +++ + G+ E R + +V E L + L
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 1483 KHA----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
K P+ LSGG +++L++A A+ P ++++DEP++ +D + + + ++I+ L
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL- 199
Query: 1539 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFL 1588
+ + A+++ +H+ + + + + G+L GS + T N L
Sbjct: 200 --KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNEL 247
|
Length = 257 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (195), Expect = 1e-15
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 9/213 (4%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA-----FIFGKDIRS 1426
A A+ + V+ G +G G+GK+T L ++G PT+G + +
Sbjct: 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77
Query: 1427 DPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA 1485
+ K R+ +G QF ++ L TV + + + G+ + + + + EKL L
Sbjct: 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF 137
Query: 1486 -KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
+K F LSGG R++++A + +P +++LDEP+ G+DP A+ M ++ S Q
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFE--SIHQSGQ 195
Query: 1545 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
V+L TH M++ + ++ G + G+P
Sbjct: 196 TVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
Length = 288 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 10/231 (4%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I N+ +Y G + K + +++F ++ G +G G+GK+T + + P+
Sbjct: 3 IKFENVDYIYSPGTPMEKK-GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1415 GTAFIFGKDIRSDP-----KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRM 1468
GT I G I + K R+ + QF +A L TV + +E + G +E
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 1469 DDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
+ ++ L + L + K F LSGG R++++A M +P I+ LDEP+ G+DP +
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ M ++ + G T VIL TH+M++ + ++ G+L SP+
Sbjct: 182 KEMMQLFKDYQ-KAGHT-VILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
|
Length = 287 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-15
Identities = 62/271 (22%), Positives = 123/271 (45%), Gaps = 25/271 (9%)
Query: 1328 DTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGE 1387
+ LD +++ + + GS++ N+ YPG K + ++FS++ GE
Sbjct: 307 ELLDEEPEVEDPPDPLKDTIGSIE-----FENVSFSYPGKK-----PVLKDISFSIEPGE 356
Query: 1388 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLE 1446
+G +G+GK+T + ++ PT G I G DIR + R+ IG Q L
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416
Query: 1447 YLTVQEHLELY------ARIKGVAEY-RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499
T++E++ L I+ + + + + LSGG +++
Sbjct: 417 G-TIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQR 473
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1559
L++A A++ +PPI+ILDE ++ +D + + + + +L +G+T +I+ A
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKL--LKGRTTLIIAHRLSTIKNA- 530
Query: 1560 CTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
RI ++ G++ G+ + L + G + L
Sbjct: 531 -DRIIVLDNGRIVERGTHEELLAKGGLYARL 560
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 34/210 (16%)
Query: 470 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGL 528
L LT+ + +AL+G +G GKST +S+L PT+G+ L+ G +I ++ +R +
Sbjct: 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-----------GLADK 577
G+ Q +LF + T+ E++ G E V+E L D
Sbjct: 80 GLVSQEPVLF-DGTIAENIRY-----G-----KPDATDEEVEEAAKKANIHDFIMSLPDG 128
Query: 578 VNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKG 633
+ +V LSGG K+++++ AL+ + K+++LDE TS +D S +L + + + KG
Sbjct: 129 YDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG 188
Query: 634 RIILLTTH---SMDEAEELGDRIAIMANGS 660
R ++ H ++ A D IA++ NG
Sbjct: 189 RTTIVIAHRLSTIRNA----DLIAVLQNGQ 214
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 22/229 (9%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I ++ K Y GG++ A+ +TF ++ GE G +GAGK+T L +I G E P+
Sbjct: 1 MIRFEHVSKAYLGGRQ-----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS 55
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
G + G DI + RR IG Q LL TV +++ + I G + +
Sbjct: 56 AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIR 115
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
V L + LL AK LSGG ++++ +A A++ P +++ DEP+ +D
Sbjct: 116 RRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA---- 171
Query: 1530 MWEVISRL---STRQGKTAVILTTHSMNEAQALCTRI-----GIMVGGQ 1570
+ E I RL R G T V++ TH + R+ G + GG
Sbjct: 172 LSEGILRLFEEFNRVGVT-VLMATHDIGLISRRSYRMLTLSDGHLHGGV 219
|
Length = 222 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 48/189 (25%), Positives = 104/189 (55%), Gaps = 10/189 (5%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKGLGVCPQYDILF 538
+ +A++G +G+GKST + +L ++G L+ G++I +D +R+ +GV PQ +LF
Sbjct: 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF 87
Query: 539 PELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGMKRK 592
+ T+ ++ + EE++E+ A + + + D + +V R LSGG K++
Sbjct: 88 ND-TIGYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145
Query: 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDR 652
+++ A++ + +++LDE TS +D ++ R ++ + KGR ++ H + D+
Sbjct: 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADK 204
Query: 653 IAIMANGSL 661
I ++ +G +
Sbjct: 205 IIVLKDGRI 213
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-15
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 36/236 (15%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ N+ V PGGK K + ++FS+QAGE +G +G+GK+T +I G PT G+
Sbjct: 319 VENVTIVPPGGK----KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 1417 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV-ME 1474
+ G D++ D + + IGY PQ D L TV E++ R + E
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA-----------RFGENADPE 422
Query: 1475 KLVEFDLLK--HAKKPSF-------------TLSGGNKRKLSVAIAMIGDPPIVILDEPS 1519
K++E L H TLSGG ++++++A A+ GDP +V+LDEP+
Sbjct: 423 KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482
Query: 1520 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575
+ +D ++ + I L R VI TH + +I ++ G++ G
Sbjct: 483 SNLDEEGEQALANAIKALKARGITVVVI--THRPS-LLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 36/234 (15%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 505
IQ+R L+ Y G A+ ++ L + +NQ+ A +G +G GKST T + + L P
Sbjct: 14 IQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ 69
Query: 506 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 561
G+ L+ G+NI D+ +R +G+ Q FP +++ +++ GV+ L
Sbjct: 70 RAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAF-----GVR--LF 121
Query: 562 ESVV-AEMVDEVGLA-----------DKVNIVVRALSGGMKRKLSL--GIALIGDSKVVI 607
E + AEM + V A DK++ +LSGG +++L + GIA+ +V++
Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLL 179
Query: 608 LDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
LDEP S +DP S +LI ++K+ +++ TH+M +A D A M G L
Sbjct: 180 LDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233
|
Length = 260 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 20/212 (9%)
Query: 452 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 511
+ + K Y + +N L L + Q +A++G +G GKST + +L GL P+ G+ L
Sbjct: 15 LNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-L 69
Query: 512 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVD 570
+ G TA + E R+ + Q L P V +++ + LKG ++ L+++
Sbjct: 70 LAG---TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLG--LKGQWRDAALQAL-----A 119
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKK 629
VGLAD+ N ALSGG K++++L ALI +++LDEP +D + R+ Q LI+
Sbjct: 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT-RIEMQDLIES 178
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ + G +LL TH + EA + DR+ ++ G
Sbjct: 179 LWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIP--PTTGDALVFGKNI- 517
G+ AV ++ L + + AL+G +G GK+T I+ + L P TG L+ G++I
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 518 --TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE-------M 568
D +R+ +G+ Q FP ++V +++ L G+++ VAE +
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 628
DEV D++ LSGG +++L + AL + +++++DEPTS +DP S L+
Sbjct: 135 WDEV--KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192
Query: 629 KIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+KK I++ TH+M +A + D + G L
Sbjct: 193 DLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
|
Length = 252 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-15
Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 34/228 (14%)
Query: 1365 PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1424
PG K K + ++F++QAGE G +G +G+GK+T ++ G PT G+ + G D+
Sbjct: 345 PGQK----KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400
Query: 1425 RS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE----- 1478
R D + R IGY PQ L + T+ E++ AR ++ EK++E
Sbjct: 401 RQWDREQLGRHIGYLPQDVELFDG-TIAENI---ARFG-------EEADPEKVIEAARLA 449
Query: 1479 --FDLLKHAKK--------PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
+L+ + TLSGG ++++++A A+ GDP +V+LDEP++ +D +
Sbjct: 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
+ I L+ + V++ H + A A +I ++ G++ G
Sbjct: 510 ALAAAI--LAAKARGGTVVVIAHRPS-ALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-15
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 29/239 (12%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP---TDGTAFIFGKDI 1424
+ K + +++ + GE +G++GAGKTT ++ ++ G+ + G I
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI 92
Query: 1425 RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD---------VVMEK 1475
D K R + Y Q D + LTV+EHL A + RM V E
Sbjct: 93 --DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHL------RMPRRVTKKEKRERVDEV 144
Query: 1476 LVEFDLLKHAK------KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
L L K A LSGG +++L+ A ++ DPP++ DEP++G+D
Sbjct: 145 LQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 1530 MWEVISRLSTRQGKTAVILTTHS-MNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587
+ +V+ L+ + GKT +I T H +E L +I +M G++ +GSP F +
Sbjct: 205 VVQVLKGLAQK-GKT-IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDL 261
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-15
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
L + +A++G NGAGKST + +L G + P +G + G+ + +G
Sbjct: 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT-VKVGETVK---------IGYF 390
Query: 532 PQ-YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVVRALSGGM 589
Q D L P+ TV E L + E V + G + V LSGG
Sbjct: 391 DQHRDELDPDKTVLEELS------EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGE 444
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAE 647
K +L L L+ +++LDEPT+ +D S+ L + + +G ++ L +H +
Sbjct: 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLE---ALEEALLDFEGTVL-LVSHDRYFLD 500
Query: 648 ELGDRIAIMANG 659
+ RI ++ +
Sbjct: 501 RVATRIWLVEDK 512
|
Length = 530 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 47/246 (19%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D 1427
+ D V + +++ ++ GE G +G +G+GK+T +I P +G + G D+ D
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD 70
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLEL------------YARIKGVAEYRM------D 1469
P RR +G Q + L ++++++ L A++ G ++ D
Sbjct: 71 PAWLRRQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD 129
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
+V E+ LSGG ++++++A A+I +P I+I DE ++ +D ++
Sbjct: 130 TIVGEQGA-------------GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGIMVGGQLRCIGSPQHLKTRF 1584
+ + + G+T +I+ A L T RI +M G++ GS L
Sbjct: 177 IMRNMHDIC--AGRTVIII-------AHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
Query: 1585 GNFLEL 1590
G + L
Sbjct: 228 GLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 3e-15
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 23/193 (11%)
Query: 450 IQIRKLHKVYATK-----RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
+++R L K + + R AV + TL E Q LA++G NG+GKST ML G+I
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 505 PTTGDALVFGKNITADMDEIRKGLGVCPQYDILF--PELTVREHLEMFAVLKG------- 555
PT+G+ L+ + R + ++F P ++ L + +L
Sbjct: 65 PTSGEILINDHPLHFGDYSFR-----SKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD 119
Query: 556 VKEELLESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
++ E + E + VGL D N L+ G K++++L ALI K++I DE +
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALAS 179
Query: 615 MDPYSMRLTWQLI 627
+D SMR QLI
Sbjct: 180 LD-MSMRS--QLI 189
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 55/242 (22%)
Query: 1354 IIYLRNLRKVY----PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1409
++ + +L K + GG R + +++ +V AGEC G +GAGK+T L +
Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57
Query: 1410 EYPTDGTAFIFGKDIRSDPKAA---------RRLIGYCPQFDALLEYLTVQEHLELYARI 1460
P G + + D A R+ IGY QF L + R+
Sbjct: 58 YLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF------------LRVIPRV 105
Query: 1461 KGVAEYRMDDVVMEKLVEF------------DLLKHAKKPS-------FTLSGGNKRKLS 1501
+ +VV E L+E +LL P T SGG +++++
Sbjct: 106 SAL------EVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159
Query: 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1561
+A I D PI++LDEP+ +D ++ + E+I+ R A+I H + +
Sbjct: 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR--GAALIGIFHDEEVRELVAD 217
Query: 1562 RI 1563
R+
Sbjct: 218 RV 219
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 3e-15
Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 11/219 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ +++ Y R + A++ L LT+ + +AL+G +GAGKST +L+ P +G
Sbjct: 338 IEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396
Query: 510 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
L+ G ++ D E+R + + PQ +LF +V E++ + EE+ + A
Sbjct: 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIR-YGRPDATDEEVEAAARAAH 454
Query: 569 VDEV------GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
E G + LSGG ++++++ A++ D+ +++LDE TS +D S +L
Sbjct: 455 AHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 623 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
Q ++ + KGR L+ H + + DRI +M G +
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLK-ADRIVVMDQGRI 552
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 3e-15
Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 39/245 (15%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ KL K + + A++++ L ++ +++ALLG +G+GKST + L GLI TGD
Sbjct: 5 IRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI---TGD 57
Query: 510 AL------VFGKNI------TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV----- 552
+ G+ + D+ + R G Q L L+V E++ + A+
Sbjct: 58 KSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF 117
Query: 553 --------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604
+ K+ L+++ VG+ + V LSGG ++++++ AL+ +K
Sbjct: 118 WRTCFSWFTREQKQRALQALT-----RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172
Query: 605 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLK 662
V++ DEP + +DP S R+ ++ I + G +++T H +D A +RI + G +
Sbjct: 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232
Query: 663 CCGSS 667
GSS
Sbjct: 233 YDGSS 237
|
Length = 262 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIP--PTTGDALVFGKNIT---A 519
A+ + +++ +N++ AL+G +G GKST + + + LIP TGD L G+NI A
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVV------AEMVDEV 572
D+ +R+ +G+ Q FP+ ++ E++ + G K + L+++V A + DEV
Sbjct: 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV 139
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
D+++ +LSGG +++L + L + +V+++DEP S +DP + LI+ +KK
Sbjct: 140 --KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+++ TH+M +A + D M G L
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 34/225 (15%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD------- 520
A++++ + + + + +A++G G+GK+T I L L+ P TG K+
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 521 ------------------MDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEEL 560
+ EIR+ +GV Q+ LF E T+ + + V GV +E
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEE 140
Query: 561 LESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+ A+ ++ VGL + + R LSGG KR+++L L + ++ DEPT+G+DP
Sbjct: 141 AKKRAAKYIELVGL--DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDP 198
Query: 618 YSMRLTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
++ ++ + K+G+ I+L TH +D E R +G +
Sbjct: 199 QGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
Length = 305 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 5e-15
Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 32/217 (14%)
Query: 1388 CFGFLGTNGAGKTTTLSMIS-----GEEYPTDGTAFIFGKDIRS---DPKAARRLIGYCP 1439
F +G +G GK+T L + EE +G +FG++I S DP RR +G
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVF 91
Query: 1440 QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA----------KKPS 1489
Q+ +LT+ +++ + ++ G+ + + + +++ VE+ L K A PS
Sbjct: 92 QYPNPFPHLTIYDNVAIGVKLNGLVKSKKE---LDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1549
LSGG +++L +A A+ P I+++DEP+ +DP+ + E++ L + ++L
Sbjct: 149 -NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLV 204
Query: 1550 THSMNEAQALCTRIGIMVGGQLRCIG-------SPQH 1579
THS +A + + + G+L +G +P+H
Sbjct: 205 THSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
|
Length = 253 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ L K G + ++L + + +A++G +G+GKST +++L GL P++G+
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 510 ALVFGKNITADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES 563
+ G+ + +DE + +G Q L P LT E++ + L+G +
Sbjct: 67 VRLLGQPLH-KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRA 125
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
+++ VGL ++ LSGG +++++L A G V+ DEPT +D +
Sbjct: 126 GAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
Query: 624 WQLI--KKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
L+ ++G ++L TH A DR + +G L
Sbjct: 186 ADLLFALNRERGTTLVLVTHDPQLAARC-DRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-15
Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ +R + K Y G+ + L ++E + + +G +G GKST + M+ GL T+GD
Sbjct: 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L G+ D+ +G+G+ Q L+P L+V E++ L G K+E + V ++
Sbjct: 60 -LFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY---SMRLTWQL 626
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D MR+
Sbjct: 119 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--- 175
Query: 627 IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672
I ++ K GR ++ TH EA L D+I ++ G + G L L H
Sbjct: 176 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
|
Length = 369 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 6e-15
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 12/217 (5%)
Query: 1377 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1436
+ ++ + +G+ LG +G+GKTT L +I+G E+ T G G D+ S A R +G
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV-SRLHARDRKVG 77
Query: 1437 YCPQFDALLEYLTVQEH----LELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFT 1491
+ Q AL ++TV ++ L + R + + V +L+E L H A +
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVT-QLLEMVQLAHLADRYPAQ 136
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG K+++++A A+ +P I++LDEP +D ++ + + +L T+V + TH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV-TH 195
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF 1584
EA + R+ +M G + G+P + TRF
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 6e-15
Identities = 54/209 (25%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 1380 TFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCP 1439
+V+ GE LG +GAGK+T L++I+G P G+ + G+D + P +RR +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRRPVSMLF 77
Query: 1440 QFDALLEYLTVQEH--------LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1491
Q + L +LTV ++ L+L A + + +E L+ + P
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------RLPG-Q 129
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++++A ++ + PI++LDEP + +DP ++ M ++S++ + T +++ +H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT-LLMVSH 188
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
S+ +A + R ++ G++ G L
Sbjct: 189 SLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 8e-15
Identities = 57/205 (27%), Positives = 112/205 (54%), Gaps = 16/205 (7%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP--TTGDALVFGKNI-TADM 521
A++ + + + ENQ+ A++G +G GKST I+ + LI G+ GKN+ AD+
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 522 DEI--RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEVGL 574
D + R+ +G+ Q FP+ ++ +++ ++G ++ E V A + DEV
Sbjct: 114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-- 170
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 634
D+++ LSGG +++L + A+ D +V+++DEP S +DP + LI+++ +
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 635 IILLTTHSMDEAEELGDRIAIMANG 659
+++ TH+M +A + D+ A+ G
Sbjct: 231 TVVIVTHNMQQAARISDKTAVFLTG 255
|
Length = 285 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 43/143 (30%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE-----IR-KGLGVCPQ 533
+ +AL+G +G+GKST +++L GL ++G+ + G+ + MDE +R K +G Q
Sbjct: 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQ-MDEEARAKLRAKHVGFVFQ 95
Query: 534 YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
+L P L E++E+ A+L+G + +++++GL +++ + LSGG ++++
Sbjct: 96 SFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155
Query: 594 SLGIALIGDSKVVILDEPTSGMD 616
+L A G V+ DEPT +D
Sbjct: 156 ALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 9e-15
Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 28/214 (13%)
Query: 461 TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA 519
TKR G+ +++L LT+ + ++ LLG +G GK+T + ++ GL PT G + G+++T
Sbjct: 13 TKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH 72
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKG-----VKEELLESVVAEMVD 570
+ R V Y LFP +++ E+ L+M V K VKE L E+VD
Sbjct: 73 RSIQQRDICMVFQSY-ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL------ELVD 125
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQLI 627
G D+ V +SGG +++++L ALI KV++ DEP S +D SMR + I
Sbjct: 126 LAGFEDRY---VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMR---EKI 179
Query: 628 KKIKKGRII--LLTTHSMDEAEELGDRIAIMANG 659
+++++ I L TH EA + D + +M G
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 9e-15
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 37/229 (16%)
Query: 458 VYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 517
G + + +L + LA++G +G+GKST ++VG+ PPT+G + G ++
Sbjct: 323 TIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL 382
Query: 518 TA-DMDEIRKGLGVCPQYDI-LFPELTVREHLEMF------------AVLKGVKEELL-- 561
D + K +G PQ D+ LFP TV E++ F A L GV E +L
Sbjct: 383 KQWDRETFGKHIGYLPQ-DVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRL 440
Query: 562 ----ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
++V+ G A LSGG +++++L AL GD K+V+LDEP S +D
Sbjct: 441 PDGYDTVIGP-----GGA--------TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 618 YSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
+ IK +K G +++ TH D+I ++ +G + G
Sbjct: 488 EGEQALANAIKALKARGITVVVITHRP-SLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 9e-15
Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 46/237 (19%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I ++N+ K++ ++ K A+ +++ + GE +G G+GKTT + ++ P
Sbjct: 3 IKVKNIVKIFNKKLPTELK-ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1415 GTAFIFGKDIRSDPKAA-------------------------RRLIGYCPQFDALLEYL- 1448
GT KD ++ K RR +G QF EY
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF---AEYQL 118
Query: 1449 ---TVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLS 1501
T+++ + GV A+ R + +LV D + ++ F LSGG KR+++
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI--ELVGLD-ESYLQRSPFELSGGQKRRVA 175
Query: 1502 VA--IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
+A +AM +P ++ DEP+ G+DP + + E+ L+ +QGKT +IL TH ++
Sbjct: 176 LAGILAM--EPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKT-IILVTHDLDNV 228
|
Length = 305 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-15
Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 22/240 (9%)
Query: 437 SLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST-- 494
LD+ + +++R L+ Y K+ A+ + + + +N++ A +G +G GKST
Sbjct: 13 LLDVLNLSDEQTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLL 68
Query: 495 -TISMLVGLIP--PTTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLE 548
+ + L+ G+ + G+NI D+ E+R+ +G+ Q FP+ ++ E++
Sbjct: 69 RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVV 127
Query: 549 MFAVLKGVKEE-LLESVV------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601
L+G+ +L+ V A + DEV D+++ LSGG +++L + A+
Sbjct: 128 YGLRLQGINNRRVLDEAVERSLRGAALWDEV--KDRLHENAFGLSGGQQQRLVIARAIAI 185
Query: 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ +V++LDEPTS +DP S +LI ++K I++ TH+M +A + D A M G L
Sbjct: 186 EPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245
|
Length = 272 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I R+L Y G K A++++ F +G NGAGK+T +G PT
Sbjct: 3 LIETRDLCYSYSGSKE-----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57
Query: 1414 DGTAFIFGKDI-RSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
G+ I G+ I + + + R+ +G Q D + TV++ + G+ E +
Sbjct: 58 SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR 117
Query: 1472 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAKRF 1529
V L L + + LSGG K+++++A IAM +P +++LDEP+ G+DP +
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKE 175
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+ + ++ L G T VI +TH ++ + I +M G++ G+ + + +
Sbjct: 176 LIDFLNDLPETYGMT-VIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
|
Length = 277 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ 533
L+ + ++L LLG NGAGK+T + ++GLIPP G V G + I G PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHI----GYVPQ 56
Query: 534 -----YDILFPELTVREHLEMFAVLKGVKEEL---------LESVVAEMVDEVGLADKVN 579
+D FP ++V V+ G + + V + + VGL + +
Sbjct: 57 RHEFAWD--FP-ISVAH-----TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELAD 108
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD-PYSMRLTWQLIKKIKKGRIILL 638
V LSGG ++++ + AL V++LDEP +G+D P LT I+ G IL+
Sbjct: 109 RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 639 TTHSMDEAEELGDRIAIMANGSL 661
TTH + +A DR+ ++ NG +
Sbjct: 169 TTHDLAQAMATCDRV-VLLNGRV 190
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 55/201 (27%), Positives = 108/201 (53%), Gaps = 8/201 (3%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADM 521
G A++ + L + + +I+ L+G NGAGK+T + L G T+G + GK+IT
Sbjct: 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA 75
Query: 522 DEIRKGLGVCPQYDILFPELTVREHLEM--FAVLKGVKEELLESVVAEMVDEVGLADKVN 579
+R+ + + P+ +F +TV E+L M F + +E ++ V L ++
Sbjct: 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPR---LHERRI 132
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILL 638
+SGG ++ L++G AL+ ++++LDEP+ G+ P ++ + I++++ +G I L
Sbjct: 133 QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL 192
Query: 639 TTHSMDEAEELGDRIAIMANG 659
+ ++A +L DR ++ NG
Sbjct: 193 VEQNANQALKLADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 8/217 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K Y R A+ + + ++ L GH+GAGKST + ++ G+ P+ G
Sbjct: 2 IRFEHVSKAYLGGRQ---ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK 58
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
G +IT ++ +R+ +G+ Q L + TV +++ + ++ G + + V
Sbjct: 59 IWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV 118
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
+ +D+VGL DK LSGG ++++ + A++ V++ DEPT +D +
Sbjct: 119 SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
Query: 626 LIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 661
L ++ + G +L+ TH + R+ +++G L
Sbjct: 179 LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 14/227 (6%)
Query: 443 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
+ G ++ + + Y T R + + + TL+ ++ AL+G +G+GKST +++L
Sbjct: 6 DHLKGI-VKFQNVTFAYPT-RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63
Query: 503 IPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHL-------EMFAVLK 554
P G L+ GK I+ + + + + Q +LF ++++++ V +
Sbjct: 64 YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKE 122
Query: 555 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
++ S ++E+ G +V LSGG K+++++ ALI + +V+ILDE TS
Sbjct: 123 AAQKAHAHSFISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+D S + Q + + R +L+ H + E D+I ++ G +
Sbjct: 181 LDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-14
Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 19/231 (8%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A + L+ +RK Y G + + + V GE +G +G GK+T L M++G E
Sbjct: 2 AGLKLQAVRKSYDGKTQ-----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDV 1471
T G +I G+ + ++ + A R I Q AL +++V+E++ Y +I+G+ + +++
Sbjct: 57 TSGEIWIGGRVV-NELEPADRDIAMVFQNYALYPHMSVRENMA-YGLKIRGMPKAEIEER 114
Query: 1472 VME--KLVEFD-LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK- 1527
V E +++E + LL +KP LSGG ++++++ A++ +P + + DEP + +D AK
Sbjct: 115 VAEAARILELEPLLD--RKPR-ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD--AKL 169
Query: 1528 RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
R M I RL R T+ + TH EA L R+ +M GG IG+P
Sbjct: 170 RVQMRLEIQRLHRRLKTTS-LYVTHDQVEAMTLADRVVVMNGGVAEQIGTP 219
|
Length = 356 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L N+ YP D A+ ++ ++ GE G +G NG+GK+T ++G P
Sbjct: 1 MIRLENVSYSYP-----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ 55
Query: 1414 DGTAFIFGKDIRSDP---KAARRLIGYCPQFDALLEYL--TVQEHLELYARIKGVAEYRM 1468
G + G D D + R+L+G Q + +++ TV+E L + +
Sbjct: 56 KGKVLVSGIDT-GDFSKLQGIRKLVGIVFQ-NPETQFVGRTVEEDLAFGPENLCLPPIEI 113
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
V L E L K+ + TLSGG + +++A + +P +I DE ++ +DP +
Sbjct: 114 RKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ E I +L +GKT ++ TH++ E RI +M G++ G P+++
Sbjct: 174 AVLERIKKLH-EKGKT-IVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 61/225 (27%), Positives = 118/225 (52%), Gaps = 31/225 (13%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 505
I ++ L+ Y G+ AV + L + + A +G +G GKST T++ + +IP
Sbjct: 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGA 60
Query: 506 -TTGDALVFGKNI-TADMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---- 557
G+ L+ G+++ +D +R+ +G+ Q FP +++R++ V+ G+K
Sbjct: 61 RVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDN-----VVAGLKLNGV 115
Query: 558 ------EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609
+EL+E + A + +EV D+++ LSGG +++L + A+ + V+++D
Sbjct: 116 RNKKDLDELVEKSLRGANLWNEV--KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 610 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 654
EP S +DP S LI ++K+ I++ TH+M +A + D+ A
Sbjct: 174 EPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTA 218
|
Length = 258 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 47/248 (18%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +N+ YPG D + ++ + AGE +G +G+GK+T +++I
Sbjct: 1 VEFKNVTFRYPG----DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS 56
Query: 1415 GTAFIFGKDIRSDPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G I G D+R D A RR IG Q D L TV E++ Y R
Sbjct: 57 GRILIDGHDVR-DYTLASLRRQIGLVSQ-DVFLFNDTVAENI-AYGR---------PGAT 104
Query: 1473 MEKLVEFDLLKHA-----KKPS----------FTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
E++ E +A + P LSGG ++++++A A++ DPPI+ILDE
Sbjct: 105 REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE 164
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGIMVGGQLR 1572
++ +D ++R + + RL + +T ++ A L T RI ++ G++
Sbjct: 165 ATSALDTESERLVQAALERLM--KNRTTFVI-------AHRLSTIENADRIVVLEDGKIV 215
Query: 1573 CIGSPQHL 1580
G+ + L
Sbjct: 216 ERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-14
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 17/231 (7%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------DPKAA 1431
SLTF C +GT G+GK+T + + +G G + I + + K
Sbjct: 31 SLTFKKNKVTCV--IGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL 88
Query: 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLK----HAK 1486
R+ IG QF EY QE +E V +K+ E L++ + K
Sbjct: 89 RKEIGLVFQFP---EYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK 145
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
+ F LSGG KR++++A + D ++LDEP+ G+DP + + RL+ K +
Sbjct: 146 RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR-I 204
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEV 1597
I+ TH+M++ + + +M G++ IGSP + + ++E+ P ++
Sbjct: 205 IMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKL 255
|
Length = 289 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-14
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 33/211 (15%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
LR+L YPG + ++ + GE LG +G+GK+T L+ ++G P G
Sbjct: 337 LRDLSAGYPGAPP-----VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
Query: 1417 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHL----------ELYA--RIKGV 1463
+ G + S D RR + C Q DA L TV+E+L EL+A G+
Sbjct: 392 VTLDGVPVSSLDQDEVRRRVSVCAQ-DAHLFDTTVRENLRLARPDATDEELWAALERVGL 450
Query: 1464 AEY--RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
A++ + D + L E LSGG +++L++A A++ D PI++LDEP+
Sbjct: 451 ADWLRALPDGLDTVLGE-----GGA----RLSGGERQRLALARALLADAPILLLDEPTEH 501
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
+D + E + L+ G+T V+L TH
Sbjct: 502 LDAETADELLEDL--LAALSGRT-VVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 19/213 (8%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
N+II +N+ Y +SDA + ++F++ G+ +G NG+GK+T ++ G E
Sbjct: 5 NSIIVFKNVSFQY----QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60
Query: 1412 PTDGTAFIFGKDIRSDP---KAARRLIGYC---P--QFDALLEYLTVQEHLELYARIKGV 1463
G IF + + R+ IG P QF + V LE +A V
Sbjct: 61 VKSGE--IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA----V 114
Query: 1464 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
M V E L + D+L+ A LSGG K+++++A + +P ++ILDE ++ +D
Sbjct: 115 PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
P A++ + +++ ++ + T +I TH ++EA
Sbjct: 175 PDARQNLLDLVRKVKSEHNIT-IISITHDLSEA 206
|
Length = 269 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 7/204 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 524
A+ ++ L + + + + ++G NG+GKST L GL+ P G LV G + T D + I
Sbjct: 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID-TGDFSKLQGI 75
Query: 525 RKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583
RK +G+ Q + F TV E L + + V + E+GL + +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTHS 642
LSGG + ++L L + + +I DE TS +DP S + IKK+ +KG+ I+ TH+
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195
Query: 643 MDEAEELGDRIAIMANGSLKCCGS 666
++E + DRI +M G + G
Sbjct: 196 LEELHD-ADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-14
Identities = 59/221 (26%), Positives = 118/221 (53%), Gaps = 12/221 (5%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD--EIR 525
++ + LT+ N ++G +G+GKST +LVG +G+ L+ G ++ D+D +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-KDIDRHTLR 547
Query: 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-----GLADKVN 579
+ + PQ +F ++ E+L + A ++E+ + +AE+ D++ G +++
Sbjct: 548 QFINYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 639
++SGG K++++L AL+ DSKV+ILDE TS +D + + + ++ II +
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFV- 665
Query: 640 THSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680
H + A++ D+I ++ +G + GS L + G +L
Sbjct: 666 AHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-14
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 19/215 (8%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSDPKA--- 1430
V ++FSV GE GF G G+G+T ++ + G + G + GKDI RS A
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 1431 -------ARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDL 1481
+RR G+ P F + + + + L+ Y G+ + E E
Sbjct: 339 GMAYITESRRDNGFFPNFS-IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 1482 LK-HAKKPSFT-LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
LK H+ + T LSGGN++K+ ++ + P ++I DEP+ G+D AK +++V+ +L+
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 1540 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI 1574
GK +++ + + E +C RI + G+L I
Sbjct: 458 -DGKV-ILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 45/197 (22%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I + L Y + + ++ LTL + + L+G NGAGKST + +L G + P +G+
Sbjct: 4 ITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEEL-------- 560
K + +G Q L PE TV +++ F L+ + EL
Sbjct: 60 V-TRPKGLR---------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 561 ---------------------LESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 599
LE+ E + +G D+ V +LSGG +R+++L AL
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRP-VSSLSGGWRRRVALARAL 168
Query: 600 IGDSKVVILDEPTSGMD 616
+ + +++LDEPT+ +D
Sbjct: 169 LEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DMD 522
+ + L + + +AL+G +G+GKST LV LIP +G L+ G ++ +
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKST----LVNLIPRFYDVDSGRILIDGHDVRDYTLA 72
Query: 523 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA----EMVDEVGLADKV 578
+R+ +G+ Q LF + TV E++ + +EE+ E+ A E + E+
Sbjct: 73 SLRRQIGLVSQDVFLFND-TVAENI-AYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 579 NIVVRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 636
I R LSGG ++++++ AL+ D ++ILDE TS +D S RL ++++ K R
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTT 190
Query: 637 LLTTHSMDEAEELGDRIAIMANG 659
+ H + E DRI ++ +G
Sbjct: 191 FVIAHRLSTIEN-ADRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 62/224 (27%), Positives = 117/224 (52%), Gaps = 23/224 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 508
IQ+ ++ Y G A+ + L + + L LLG +GAGKS+ + +L L P +G
Sbjct: 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 509 -----DALVFGKNITA-DMDEIRKGLG-VCPQYDILFPELTVREHL--EMFAVLKGVKEE 559
+ F K + + E+R+ +G V QY+ L+P LTV+++L VL K++
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN-LWPHLTVQQNLIEAPCRVLGLSKDQ 117
Query: 560 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
L ++++ + L + LSGG ++++++ AL+ + +V++ DEPT+ +DP
Sbjct: 118 ALARAE-KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP-- 174
Query: 620 MRLTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 659
+T Q++ I++ G ++ TH ++ A + R+ M NG
Sbjct: 175 -EITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 4e-14
Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 1366 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1425
R V ++F + G+ +G GAGK+T ++++ P G I G DIR
Sbjct: 345 DNSRQ----GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400
Query: 1426 SDPKAA-RRLIGYCPQFDALLEYLTVQEHL----------ELYARIKGVAEYRMDDVVME 1474
+ +A+ RR I Q DA L ++++++ E+ A + + D +
Sbjct: 401 TVTRASLRRNIAVVFQ-DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAH---DFIER 456
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
K +D + LSGG +++L++A A++ DPPI+ILDE ++ +D + + +
Sbjct: 457 KPDGYD--TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514
Query: 1535 SRLSTRQGKTAVI----LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
L +G+T I L+T + A RI + G++ GS L R G F L
Sbjct: 515 DEL--MKGRTTFIIAHRLST--VRNA----DRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 523
AV+ + LTL Q L L+G +G+GKST L+ LIP G+ G++I +M
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSRKEMRP 360
Query: 524 IRKGLGVCPQ--YDILFPELTVREHL-EMFAV--LKGVKEELLESVVAEMVDEVGLADKV 578
+R+ + V Q Y L P +TV + + E V K E + V+ + EVGL
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE-EVGL--DP 417
Query: 579 NIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635
R SGG ++++++ ALI ++++LDEPTS +D L++ +++
Sbjct: 418 ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG 477
Query: 636 I--LLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDA 689
+ L +H + L R+ +M +G + G + + YT L+ +A D
Sbjct: 478 LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDI 533
|
Length = 534 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 12/232 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I+ + L Y G A+ + +++ GE LG NGAGK+T ++G P+
Sbjct: 5 ILKVEELNYNYSDGTH-----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59
Query: 1414 DGTAFIFGKDIRSDPKAA---RRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMD 1469
G GK I K R +G Q D L +V + + A + E +
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR 119
Query: 1470 DVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
V + ++ ++H K KP+ LS G K+++++A ++ +P +++LDEP+ G+DP+
Sbjct: 120 KRV-DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ +++ + G T +I TH ++ C + +M G++ G+P+ +
Sbjct: 179 EIMKLLVEMQKELGLTIII-ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
Length = 283 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 47/283 (16%)
Query: 1335 DIDVQVERN-RVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLG 1393
I + VL+ S + + +RNL ++ G K+ A+ ++ + F+G
Sbjct: 5 GITLMALPLLDVLNLSDEQTALEVRNL-NLFYGDKQ-----ALFDISMRIPKNRVTAFIG 58
Query: 1394 TNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRSDPK----AARRLIGYCPQ---- 1440
+G GK+T L + + +G + G++I D K RR +G Q
Sbjct: 59 PSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNP 117
Query: 1441 FDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLLKHAK----KPSFTLSGG 1495
F ++ E++ R++G+ R +D+ V L L K + +F LSGG
Sbjct: 118 FPK-----SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172
Query: 1496 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE 1555
+++L +A A+ +P +++LDEP++ +DPI+ + E+I+ L + K +++ TH+M +
Sbjct: 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNMQQ 229
Query: 1556 AQALCTRIGIMVGGQLRCIG-------SPQHLKT------RFG 1585
A + M G+L G SP +T R+G
Sbjct: 230 AARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYITGRYG 272
|
Length = 272 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-14
Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 30/269 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--- 506
+ IR L + + G AV + + + LAL+G +G+GKS T ++GL+P
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 507 --TGDALVFGKNI-TADMDEIRKGLGVCPQYDI----------LFPELTVREHL-EMFAV 552
+G L G+++ A ++R G I L P T+ + L E+ +
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGN----KIGMIFQEPMTSLNPLHTIGKQLAEVLRL 122
Query: 553 LKGVKEELLESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIALIGDSKVVILD 609
+G+ + E+++ VG+ + + LSGG ++++ + +AL + ++I D
Sbjct: 123 HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD 182
Query: 610 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667
EPT+ +D L+K+++ G IL TH + + DR+ +M +G + G++
Sbjct: 183 EPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242
Query: 668 --LFLKHQYGVGYTLTLVKSAPDASAAAD 694
LF Q+ YT L+ + P
Sbjct: 243 ETLFAAPQH--PYTRKLLAAEPSGDPPPL 269
|
Length = 534 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 6e-14
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 480 QILALLGHNGAGKSTTISML-----VGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 534
+ AL+G +GAGK+T +++L G+I T GD LV G+ + + +G Q
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGVI--TGGDRLVNGRPLDSSFQRS---IGYVQQQ 844
Query: 535 DILFPELTVREHLEMFAVLKGVKEELLE---SVVAEMVDEVGLADKVNIVV----RALSG 587
D+ P TVRE L A L+ K V E++ + + + VV L+
Sbjct: 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNV 904
Query: 588 GMKRKLSLGIALIGDSKVVI-LDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH--SM 643
+++L++G+ L+ K+++ LDEPTSG+D + +L++K+ G+ IL T H S
Sbjct: 905 EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964
Query: 644 DEAEELGDRIAIMANG 659
EE DR+ ++ G
Sbjct: 965 ILFEEF-DRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-14
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 1358 RNLRKVYPGG---KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
L Y G + + +++++ S+++GE LG +G GK+T ++ G E P+
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 1415 GTAFIFGKDI----RSDPKAARRLIGYCPQFDAL----------------LEYLTVQEHL 1454
G G+ + R+ KA RR I Q D++ L +L L
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQ-DSISAVNPRKTVREIIREPLRHLL---SL 122
Query: 1455 ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514
+ R+ +E M + V+ D K LSGG +++ +A A+ +P ++I
Sbjct: 123 DKAERLARASE-------MLRAVDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL--- 1571
LDE + +D + + + ++ +L + G TA + TH + + C R+ +M GQ+
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFG-TACLFITHDLRLVERFCQRVMVMDNGQIVET 233
Query: 1572 RCIGSPQHLKTRFGNFLELEVKPT 1595
+ +G + G L+ V P
Sbjct: 234 QPVGDKLTFSSPAGRVLQNAVLPA 257
|
Length = 268 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 6e-14
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 18/209 (8%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP--TTGDALVFGKNITADM- 521
AV + + + A++G +G GKST I+ + LIP TTG + G++I
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 522 DEI--RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-ELLESVV------AEMVDEV 572
DE+ RK +G+ Q FP+ ++ +++ L G+ + + LE +V A + DEV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV 172
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
+D+++ LSGG +++L + L + ++++LDEPTS +DP + LI++++
Sbjct: 173 --SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG 230
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSL 661
I++ TH+M +A + D G L
Sbjct: 231 SYTIMIVTHNMQQASRVSDYTMFFYEGVL 259
|
Length = 286 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 38/163 (23%)
Query: 1392 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGK---DIRSDPKAARRLIGYCPQFDALLEYL 1448
+G +GAGKTT L +++G + T G I G+ + R K +R GY Q D L
Sbjct: 39 MGESGAGKTTLLDVLAGRK--TAGV--ITGEILINGRPLDKNFQRSTGYVEQQDVHSPNL 94
Query: 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508
TV+E L A ++G LS +++L++ + +
Sbjct: 95 TVREALRFSALLRG-----------------------------LSVEQRKRLTIGVELAA 125
Query: 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
P I+ LDEP++G+D A + + +L+ G+ ++ T H
Sbjct: 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQA-ILCTIH 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 7e-14
Identities = 56/202 (27%), Positives = 112/202 (55%), Gaps = 11/202 (5%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIR 525
A++S+ L + + +AL+G +G+GKST ++++ P +G L+ G ++ AD + +R
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL-ADYTLASLR 405
Query: 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA----EMVDEVGLADKVNIV 581
+ + + Q +LF + T+ ++ + + E+ ++ A + VD++ L I
Sbjct: 406 RQVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 582 VRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 639
LSGG +++L++ AL+ D+ ++ILDE TS +D S RL ++++ +GR L+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524
Query: 640 THSMDEAEELGDRIAIMANGSL 661
H + E+ DRI +M +G +
Sbjct: 525 AHRLSTIEK-ADRIVVMDDGRI 545
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 7e-14
Identities = 59/218 (27%), Positives = 115/218 (52%), Gaps = 20/218 (9%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A+++++F V GE G +G NG+GK+T ++I+G P GT D K + L
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV---------DIKGSAAL 89
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLS 1493
I L LT E++EL + G+ + ++ +++ +++EF D+ K +P T S
Sbjct: 90 IAIS---SGLNGQLTGIENIELKGLMMGLTKEKIKEII-PEIIEFADIGKFIYQPVKTYS 145
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS--TRQGKTAVILTTH 1551
G K +L AI++ +P I+++DE + D + F + + +++ QGKT + +H
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKT-IFFISH 201
Query: 1552 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLE 1589
S+++ ++ CT+ + GQ++ G + + + FL+
Sbjct: 202 SLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239
|
Length = 549 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 7e-14
Identities = 53/186 (28%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEI----RKGL 528
L +Y +++A++G +G+GKST +++L L PT+G V G+++ T D D + R+
Sbjct: 29 LDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHF 88
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 588
G Q L LT +++E+ AV G++ + E++ +GL D+V LSGG
Sbjct: 89 GFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGG 148
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAE 647
++++S+ AL+ +V++ DEPT +D +S ++ +++ +G +++ TH A
Sbjct: 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA 208
Query: 648 ELGDRI 653
+ +R+
Sbjct: 209 Q-AERV 213
|
Length = 648 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 9e-14
Identities = 54/210 (25%), Positives = 107/210 (50%), Gaps = 18/210 (8%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIRK 526
V + ++ +IL G G+G++ ++ L G+ G+ + GK+I+ + +D ++K
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 527 GLGVCPQY---DILFPELTVREHLEMFAVLK--------GVKEELLESVVAEMVDEVGLA 575
G+ + + FP ++ +++ + LK G+ E+ E AE E+ LA
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQREL-LA 397
Query: 576 DK---VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-K 631
K VN + LSGG ++K+ + L +V+I DEPT G+D + +++++++
Sbjct: 398 LKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 632 KGRIILLTTHSMDEAEELGDRIAIMANGSL 661
G++IL+ + + E + DRIA+ G L
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 21/212 (9%)
Query: 163 YTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWF 222
+ ++G+L L L + V EKE +I+E L + G+ + L
Sbjct: 85 PLFNPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKI 144
Query: 223 ITYAAQFAVSSGIITACTMDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAV 282
+ + II + + ++ F +GL+ I L + + F ++ A+
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 283 AVG---TLSFLGAFFPYYTVNDEAVPMVLKVIASLLSPTAFALGSVNFADYERAHVGLRW 339
V L G F + + + +P L+ I S++ A G +
Sbjct: 205 LVISILILLLSGFFGGLFPLPN--MPSFLQWIFSIIPFFAPIDGLLRIIYG--------- 253
Query: 340 SNMWRASSGVNFLVCLLMMLLDTLLYGVIGLY 371
L+ L+++LL ++ ++ L
Sbjct: 254 -------DLAEILLSLIILLLFGVVLLLLALL 278
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 63/257 (24%), Positives = 116/257 (45%), Gaps = 42/257 (16%)
Query: 1350 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1409
D+ I+ ++NL V+ K+ + VA+++++++ + + + +G +G+GK+T ++ +G
Sbjct: 17 SDDIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 1410 EYPTDGTAFIFGKDIRSDPKAA-------------------RRLIGYCPQFDALLEYL-- 1448
GT + DI K RR + QF EY
Sbjct: 76 IKSKYGTIQV--GDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP---EYQLF 130
Query: 1449 --TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS------FTLSGGNKRKL 1500
T+++ + GV + +KL +F L K S F LSGG KR++
Sbjct: 131 KDTIEKDIMFGPVALGVKKSEA-----KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV 185
Query: 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALC 1560
++A + P I+I DEP+ G+DP + M ++I + KT V + TH+M +
Sbjct: 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKT-VFVITHTMEHVLEVA 243
Query: 1561 TRIGIMVGGQLRCIGSP 1577
+ +M G++ G+P
Sbjct: 244 DEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 20/226 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG----EEYPTDGTAFIFGKDIRSDPKA 1430
V L S++ GE +G +G+GK+ T I G T G + G+ + P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1431 AR-RLIGYCPQ--FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-- 1485
R R I Q A T+ H R G + +++E L L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 1486 -KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
KK F LSGG +++ +A+A++ +PP +I DEP+T +D + + + +++ L G T
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG-T 177
Query: 1545 AVILTTHSMNEAQALCTRIGIMVGGQL-------RCIGSPQHLKTR 1583
++L TH + + + +M G++ +P+H TR
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (181), Expect = 1e-13
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 33/228 (14%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL------- 1403
+ +RN Y + K +H L ++ + F+G +G GK+T L
Sbjct: 77 HANVFEIRNFNFWY----MNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132
Query: 1404 SMISGEEYPTDGTAFIFGKDIRSDPKAA---RRLIGYCPQFDALLEYLTVQEHLELYARI 1460
+I G + +G + G + RS ++ R IG Q E +++ +++ R
Sbjct: 133 DLIEGTSH--EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRN 189
Query: 1461 KGVAEYRMDDVVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPP 1511
G+ + + ++EK+VE L A K LSGG +++L +A A+ +P
Sbjct: 190 NGINDRK----ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE 245
Query: 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1559
++++DEP++ +DPIA + E+I L + K ++I+ THSM +AQ +
Sbjct: 246 VLLMDEPTSALDPIATAKIEELILEL---KKKYSIIIVTHSMAQAQRI 290
|
Length = 329 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 22/222 (9%)
Query: 455 LHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL-----IPPTTGD 509
LH Y K A+ + + +N+I AL+G +G+GKST + L + I TG
Sbjct: 26 LHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81
Query: 510 ALVFGKNITA-DMD--EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-ELLESVV 565
L G +I +++ E+RK +G+ Q F + ++ E++ GVK+ ++L+ +V
Sbjct: 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIV 140
Query: 566 ------AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
A + D+V D ++ LSGG +++L + A+ ++++DEP S +DP S
Sbjct: 141 ETSLKQAALWDQV--KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIS 198
Query: 620 MRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ + ++KK I++ TH+M +A D A G L
Sbjct: 199 TMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240
|
Length = 267 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 52/204 (25%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTI---SMLVGLIP--PTTGDALVFGKNI-TADMDEI- 524
+ L +Y+ ++ A +G +G GKST + + + +P G+ + G ++ + D + +
Sbjct: 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83
Query: 525 -RKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGL----ADK 577
R +G+ Q FP+ ++ +++ L G+ ++ L+ +V + + VGL D+
Sbjct: 84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDR 142
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL 637
+ LSGG +++L + A+ ++++DEP S +DP + + LI+++KK I+
Sbjct: 143 LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTII 202
Query: 638 LTTHSMDEAEELGDRIAIMANGSL 661
+ THSM +A+++ DR+A +G +
Sbjct: 203 VVTHSMKQAKKVSDRVAFFQSGRI 226
|
Length = 251 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 31/235 (13%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG----- 1408
I + NL Y G+ K A+ ++ + + +G +G GK+T L ++
Sbjct: 1 AIEIENLNLFY--GE----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54
Query: 1409 EEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIK 1461
+G G+DI + D RR +G Q F +++ +++ R+
Sbjct: 55 PGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-----MSIYDNIAYGPRLH 109
Query: 1462 GV-AEYRMDDVVMEKLVE---FDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1516
G+ + +D++V E L + +D +K + LSGG +++L +A A+ +P +++LD
Sbjct: 110 GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 1517 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
EP++ +DPIA + E+I L K +++ TH+M +A + R G+L
Sbjct: 170 EPTSALDPIATGKIEELIQELKK---KYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-13
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 26/210 (12%)
Query: 1380 TFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGK--DIRSDPKAARRLIGY 1437
+FSV+AGE G G GAG++ + ++ G T G ++ GK DIRS A R I
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332
Query: 1438 CPQ---FDALLEYLTVQEHLELYAR---------IKGVAEYRMDDVVMEKLVEFDLLK-- 1483
CP+ + ++ +V +++ + AR I E D + L +K
Sbjct: 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN----IKTP 388
Query: 1484 HAKKPSFTLSGGNKRK--LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
++ LSGGN++K L ++ D +++LDEP+ G+D AK ++ VI L+ Q
Sbjct: 389 SREQLIMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQ 445
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
G AV+ + + E + RI +M G++
Sbjct: 446 GV-AVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 13/232 (5%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
K +H++ ++ GE +G +G+GK+T L I+ E T G + G + D
Sbjct: 9 KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN-D 67
Query: 1428 PKAARRLI----GYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLL 1482
PK RLI G Q L +LT E++ R++G ++ + E L + L
Sbjct: 68 PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA 127
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
+ A LSGG ++++++A A+ P +++ DEP++ +DP + + +V+ L+ +G
Sbjct: 128 ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG 186
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT-----RFGNFLE 1589
T VI+ TH + A+ + +R+ + G++ G PQ L R FL+
Sbjct: 187 MTMVIV-THEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237
|
Length = 240 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT------AFIFGKDIRSDP 1428
A+ +T GE LG +GAGK++ L +++ E P GT F F K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP--SD 74
Query: 1429 KAARRL---IGYCPQFDALLEYLTVQEHL-ELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1484
KA R L +G Q L +LTVQ++L E R+ G+++ + + L L +
Sbjct: 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY 134
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
A + LSGG ++++++A A++ +P +++ DEP+ +DP + +I L+ G T
Sbjct: 135 ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETGIT 193
Query: 1545 AVILTTHSMNEAQALCTRIGIMVGGQL------RCIGSPQHLKTRFGNFL 1588
VI+ TH + A+ +R+ M G + C PQ F N+L
Sbjct: 194 QVIV-THEVEVARKTASRVVYMENGHIVEQGDASCFTQPQ--TEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 18/221 (8%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKA 1430
+LT + G +G NG GK+T L +S P G ++ G+ I+ + +
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 1431 ARRLIGYCPQFDALLEYLTVQE--------HLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
ARR IG Q +TVQE H L+ R + E + V + + +
Sbjct: 80 ARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE----EAVTKAMQATGIT 134
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
A + TLSGG +++ +A+ + + I++LDEP+T +D + + E++S L+ +G
Sbjct: 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194
Query: 1543 KT-AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
T A +L H +N+A + + + G++ G+P+ + T
Sbjct: 195 YTLAAVL--HDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-13
Identities = 64/210 (30%), Positives = 111/210 (52%), Gaps = 16/210 (7%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGK--DIRSDPKAA 1431
V ++FS++ GE G G GAG+T + + G YP +G FI GK IR+ +A
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA-YPGRWEGEIFIDGKPVKIRNPQQAI 336
Query: 1432 RRLIGYCPQ---FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKK 1487
+ I P+ D ++ + V +++ L A + R+DD K + + + K
Sbjct: 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT 396
Query: 1488 PSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
S LSGGN++K +A ++ +P I+ILDEP+ G+D AK ++++I++L +QG
Sbjct: 397 ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV-QQG 455
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
A+I+ + + E L R+ +M G+L+
Sbjct: 456 -VAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
Length = 506 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 23/236 (9%)
Query: 1349 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1408
+ AII NL Y +D K A++++ + +G +G GK+T L ++
Sbjct: 2 PKNEAIIETENLNLFY-----TDFK-ALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55
Query: 1409 -----EEYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1460
E +G GK+I S D RR IG Q +++ +++ +I
Sbjct: 56 MNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKI 114
Query: 1461 KGVAEYR-MDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1515
G + + +D++V + L + L K + +LSGG +++L +A + +P ++++
Sbjct: 115 HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174
Query: 1516 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
DEP++ +DPI+ + E+I L + +I+ TH+M +A + R + G +
Sbjct: 175 DEPTSALDPISTGKIEELIINL---KESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227
|
Length = 254 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI----RSDPKAARRL 1434
++ +V G+ +G +G GKTT L +I G+ P G G++I RS R+
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 1435 IGYCPQFDALLEYLTV--------QEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
+ Q AL + V +EH +L A + + VM KL L AK
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL-------LHSTVMMKLEAVGLRGAAK 138
Query: 1487 -KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545
PS LSGG R+ ++A A+ +P +++ DEP G DPI + ++IS L++ G T
Sbjct: 139 LMPS-ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197
Query: 1546 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
V++ +H + E ++ I+ ++ GS Q L+
Sbjct: 198 VVV-SHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 1393 GTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK-----AARRLIGYCPQFDALLEY 1447
G +G+GKT+ ++MI+G P +G + G+ + K +R IGY Q L +
Sbjct: 31 GPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90
Query: 1448 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507
TV+ +L Y K + D +V L LL + P TLSGG K+++++ A++
Sbjct: 91 YTVRGNLR-YGMWKSMRAQ-FDQLV-ALLGIEHLLD--RYPG-TLSGGEKQRVAIGRALL 144
Query: 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1567
P ++++DEP +D KR + + RL + ++ +HS++E L R+ ++
Sbjct: 145 TAPELLLMDEPLASLDLPRKREILPYLERLR-DEINIPILYVSHSLDEVLRLADRVVVLE 203
Query: 1568 GGQLRCIG 1575
G+++ G
Sbjct: 204 NGKVKASG 211
|
Length = 352 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 48/200 (24%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK-NITADMDEIRK 526
A++ + L YE ++ L+G NG+GKST +++ G + PT G G+ ++ A I
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIA----ISA 94
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
GL +LT E++E + G K + ++++ ++++ L + + V+ S
Sbjct: 95 GLS---------GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYS 145
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI----KKGRIILLTTHS 642
GM+ KL I + + ++++DE S D + + KI ++ + I +H+
Sbjct: 146 SGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIFFVSHN 202
Query: 643 MDEAEELGDRIAIMANGSLK 662
+ + + +IA + G LK
Sbjct: 203 LGQVRQFCTKIAWIEGGKLK 222
|
Length = 264 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 42/255 (16%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ + L K Y GGK ++F + GE G +G +G+GK+T L ++G P
Sbjct: 2 PLLQVSGLSKSYGGGK------GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55
Query: 1413 TDGTAFIFGKD-----IRSDPKAARRLI-----GYCPQ--FDALLEYLT----VQEHL-- 1454
GTA + + +A RR + G+ Q D L ++ + E L
Sbjct: 56 DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA 115
Query: 1455 ---ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
Y I+ A+ +++V E D + P SGG +++L +A ++ P
Sbjct: 116 IGARHYGNIRATAQDWLEEV------EIDPTRIDDLPR-AFSGGMQQRLQIARNLVTRPR 168
Query: 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+V +DEP+ G+D + + +++ L G AVI+ TH + A+ L R+ +M G++
Sbjct: 169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLG-LAVIIVTHDLGVARLLAQRLLVMQQGRV 227
Query: 1572 -------RCIGSPQH 1579
+ + PQH
Sbjct: 228 VESGLTDQVLDDPQH 242
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (175), Expect = 4e-13
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 5/204 (2%)
Query: 462 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD- 520
K + +N + ++ + + ++++G NG+GKSTT ++ GL G + G+ +TA+
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN 75
Query: 521 MDEIRKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 579
+ +R+ +G+ Q D F TV + + +G+ E + V E + V + D
Sbjct: 76 VWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT 135
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR--IIL 637
LSGG K+++++ + +++ILDE TS +DP + ++I +IK+ +L
Sbjct: 136 REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVL 195
Query: 638 LTTHSMDEAEELGDRIAIMANGSL 661
TH +DEA DRI +M G +
Sbjct: 196 SITHDLDEAAS-SDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 4e-13
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 39/223 (17%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDI- 1424
K A++ +T S+ +G +G GK+T L +I G G G++I
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR--ITGDILYNGENIM 76
Query: 1425 --RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE 1478
+D A RR IG Q F ++ E++ RI G + D ++EK
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPK-----SIYENVAYGPRIHGEKNKKTLDTIVEKS-- 129
Query: 1479 FDLLKHA----------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
LK A + +LSGG +++L +A + +P ++++DEP + +DPIA
Sbjct: 130 ---LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ ++I L VI+ TH+M +A + G M G+L
Sbjct: 187 KIEDLIEDLKKEY---TVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 50/184 (27%), Positives = 102/184 (55%), Gaps = 11/184 (5%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 541
+A+LG +GAGKST ++++ G + P +G + G++ T R+ + + Q + LF L
Sbjct: 28 VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT-TPPSRRPVSMLFQENNLFSHL 86
Query: 542 TVREH--LEMFAVLK--GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 597
TV ++ L + LK + E L + ++G+ D + + LSGG +++++L
Sbjct: 87 TVAQNIGLGLNPGLKLNAAQREKLH----AIARQMGIEDLLARLPGQLSGGQRQRVALAR 142
Query: 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII--LLTTHSMDEAEELGDRIAI 655
L+ + +++LDEP S +DP + L+ ++ + R + L+ +HS+++A + R +
Sbjct: 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV 202
Query: 656 MANG 659
+A+G
Sbjct: 203 VADG 206
|
Length = 232 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 18/225 (8%)
Query: 450 IQIRKLHKV--YAT---KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
+++R L K Y T +R AV L TL E Q LA++G NG+GKST ML G+I
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 505 PTTGDALVFGKNIT-ADMDEIRKGLGVCPQ--YDILFPELTVREHLEMFAVLK-GVKEEL 560
PT+G+ L+ + D + + + Q L P + + L+ L ++ E
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ 124
Query: 561 LESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
E + E + +VGL D + L+ G K++L L ALI KV+I DE + +D S
Sbjct: 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLD-MS 183
Query: 620 MRLTWQLIKKI-----KKGRIILLTTHSMDEAEELGDRIAIMANG 659
MR QLI + K+G + T + + + D++ +M G
Sbjct: 184 MRS--QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226
|
Length = 267 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 4e-13
Identities = 63/237 (26%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-- 1425
KR + ++ AG+ +G++G+GK+T L I+ E P++G+ + G+ I
Sbjct: 13 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLV 72
Query: 1426 ---------SDPKAAR----RLIGYCPQFDALLEYLTVQEH-LELYARIKGV--AEYRMD 1469
+D R RL F+ L ++TV E+ +E ++ G+ E R
Sbjct: 73 RDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLSKQEARER 131
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
V V D K P LSGG ++++S+A A+ +P +++ DEP++ +DP
Sbjct: 132 AVKYLAKVGIDERAQGKYPV-HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
+ ++ +L+ +GKT V++ TH M A+ + + + + G++ G+P+ L FGN
Sbjct: 191 VLRIMQQLA-EEGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGAPEQL---FGN 242
|
Length = 257 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-13
Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--DGTAFIFGK--DIRSDPKAA 1431
V ++FS++ GE G G GAG+T + + G YP +G FI GK DIR+ +A
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA-YPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 1432 RRLIGYCPQ---FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV--EFDLLK--- 1483
R I P+ ++ L V +++ L + R+D +++ LK
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 1484 -HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
P LSGGN++K +A ++ +P ++ILDEP+ G+D AK ++++I++L+ ++G
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA-QEG 453
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
A+I+ + + E L R+ ++ G+L+
Sbjct: 454 -VAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 4e-13
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 10/206 (4%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT--GDALVFGKNITAD- 520
G A++ + L + + + L G NGAGKST + +L G+ P T G+ G + A
Sbjct: 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN 71
Query: 521 -MDEIRKGLGVCPQYDILFPELTVREHLEMF--AVLKGVKEELLESV--VAEMVDEVGL- 574
D R G+ + Q L PEL+V E++ + L G + ++ E+ L
Sbjct: 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD 131
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KG 633
AD V V GG ++ + + AL ++++ILDEP+S + + +I+ +K G
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 634 RIILLTTHSMDEAEELGDRIAIMANG 659
+ +H ++E + + D I ++ +G
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 16/212 (7%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG---TAFIF--GKDI--- 1424
K AV ++ VQ G +G +G GKTT L I+ T G T I G+DI
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76
Query: 1425 RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE----FD 1480
R DP A RR +G Q ++V +++ ++ G+ + V E+ + +D
Sbjct: 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136
Query: 1481 LLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1539
+K K P+ LSGG +++L +A A+ +P I+++DEP++ +DP + + ++++ L
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-- 194
Query: 1540 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ T +I+ TH+M++A + + G L
Sbjct: 195 -KKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
|
Length = 252 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 6e-13
Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 22/225 (9%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTL----SMISGEEYPTDGTAFIFGKDIRSDPKA 1430
A+H++ ++ GE LG +G+GK+T L +I+G++ + G+ ++ + +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELL-GRTVQREGRL 77
Query: 1431 ARRL------IGYCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEK 1475
AR + GY Q L+ L+V E++ L + +R ++
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTCFSWFTREQKQRALQA 136
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
L ++ A + TLSGG ++++++A A++ +++ DEP +DP + R + + +
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 1536 RLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
++ G T V++T H ++ A C RI + G + GS Q
Sbjct: 197 DINQNDGIT-VVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 6e-13
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 19/221 (8%)
Query: 450 IQIRKLHKVYATKRGNC-CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
I+++ +H G+ A+ + L + + I+ ++G NG GKST + GL P G
Sbjct: 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397
Query: 509 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ L+ G ++AD + Y LF + HL + E +
Sbjct: 398 EILLDGAAVSADSRD---------DYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY 448
Query: 569 VDEVGLADKVNI------VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ + +ADKV I ALS G +++L+L A + D +++ DE + DP R
Sbjct: 449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRF 508
Query: 623 TW-QLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ +L+ +K+ G+ I++ +H D+ EL D+I +A G +
Sbjct: 509 FYEELLPDLKRQGKTIIIISHD-DQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 6e-13
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 1350 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL------ 1403
+ I+ L K++ G +AV ++ E GF+G +G GK+T L
Sbjct: 3 SEAPIVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57
Query: 1404 -SMISGEEYPTDGTAFIFGKDIRS---DPKAARRLIGYC---PQFDALLEYLTVQEHLEL 1456
++ G + +G G+D+ DP RR IG P ++ + V L L
Sbjct: 58 NDLVKG--FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRL 115
Query: 1457 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS-FTLSGGNKRKLSVAIAMIGDPPIVIL 1515
R KG R+ ++ +D +K K S +LSGG +++L +A A+ +P +++L
Sbjct: 116 -NRYKGDLGDRVKHA-LQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLL 173
Query: 1516 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
DEP + +DPIA R + E++ L + + L TH+M +A
Sbjct: 174 DEPCSALDPIATRRVEELMVEL---KKDYTIALVTHNMQQA 211
|
Length = 261 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 46/227 (20%), Positives = 84/227 (37%), Gaps = 42/227 (18%)
Query: 443 QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 502
+ R I + + +++ +LG G+G ST + L
Sbjct: 2 STLSWRNISFTTGKGRSKIPI-----LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56
Query: 503 IPPT---TGDALVFGKNITADMDEIRKGLGV-CPQYDILFPELTVREHLEMFAVLKGVKE 558
GD + + + E G + + D+ FP LTVRE L+ KG
Sbjct: 57 TEGNVSVEGD-IHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG--- 112
Query: 559 ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
N VR +SGG ++++S+ AL+ + V+ D T G+D
Sbjct: 113 --------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 619 SMRLTWQLIKKIK------KGRIILLTTHSMDEAEELGDRIAIMANG 659
+ +++K I+ K + + DE +L D++ ++ G
Sbjct: 153 T---ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-13
Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS----- 1407
I+ + +L VY K+ A++S++ E +G +G+GK+T L I+
Sbjct: 4 PILQVSDL-SVYYNKKK-----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 1408 GEEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARI 1460
E G+ G +I R+D R+ IG Q F +++ E++ R+
Sbjct: 58 NPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-----MSIYENVVYGLRL 112
Query: 1461 KGVAE-YRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1515
KG+ + +D+ V + L + K + LSGG ++++ +A + P I++L
Sbjct: 113 KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172
Query: 1516 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
DEP++ +DPI+ + E + L + ++L T SM +A + R G + G L
Sbjct: 173 DEPTSALDPISAGKIEETLLGL---KDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-13
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 16/203 (7%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRKGLG 529
+ L + +IL L G GAG++ L GL P G ++ GK I A + +GL
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 530 VCP---QYDILFPELTVR------EHLEMFAVLKGVKEE-LLESVVAEMVDEVGLADKVN 579
P Q L+ + + H +K +E +LE + + A++
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA- 400
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILL 638
R LSGG ++K+ + L +++I+DEPT G+D + +QLI+ I + +L
Sbjct: 401 --ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 639 TTHSMDEAEELGDRIAIMANGSL 661
+ ++E E++ DR+ +M G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 7e-13
Identities = 71/257 (27%), Positives = 113/257 (43%), Gaps = 48/257 (18%)
Query: 1362 KVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTD 1414
V+ G K+ A+ + + F+G +G GK+T L I G
Sbjct: 26 SVFYGEKQ-----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR--VT 78
Query: 1415 GTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVA--E 1465
G + G+DI R D R +G Q F ++ E++ RI G+A +
Sbjct: 79 GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-----SIYENVAYGPRIHGLARSK 133
Query: 1466 YRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
+D++V L + L + K +P LSGG +++L +A A+ P ++++DEP +
Sbjct: 134 AELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------ 1575
+DPIA + E+I L RQ T VI+ THSM +A + R G L +G
Sbjct: 194 LDPIATAKVEELIDEL--RQNYTIVIV-THSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250
Query: 1576 -SPQHLKT------RFG 1585
+P +T RFG
Sbjct: 251 TNPDDPRTQDYITGRFG 267
|
Length = 267 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 7e-13
Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 508
I+IR ++ Y + + ++ + E QI A++G +G GKST + L + +G
Sbjct: 5 IKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 509 ----DALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EEL 560
L+ +NI + D+ +RK +G+ Q FP+ ++ +++ + G +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSR 119
Query: 561 LESVVAEMVDEVGLADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
L+ VV + + + L D+V + ALSGG +++L + L + +V+++DEP S +D
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 617 PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
P S +L++++K+ I + TH+M +A D + G L
Sbjct: 180 PVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224
|
Length = 251 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 8e-13
Identities = 58/216 (26%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGV 530
L TL+ +++AL+G +G+GKST ++L L PT G L+ G + D + + + +
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 531 CPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV----RA 584
Q +LF +VRE++ + + EE++ + A + + + + V
Sbjct: 560 VGQEPVLFSG-SVRENI-AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617
Query: 585 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 644
LSGG K+++++ AL+ +V+ILDE TS +D +L + + R +LL H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS--RASRTVLLIAHRLS 675
Query: 645 EAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680
E D+I ++ GS+ G+ L G L
Sbjct: 676 TVER-ADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-13
Identities = 57/215 (26%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSDPKAARR 1433
V+ ++F+++ GE G G GAG+T + ++ G T G + G ++ RS
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1434 LIGYCPQ---FDALLEYLTVQEHLELYA---------RIKGVAEYRMDDVVMEKLVEFDL 1481
I Y + D L+ ++V+E++ L A +K E + + +F
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-------QQAVSDFIR 380
Query: 1482 LKHAKKPSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1536
L + K PS LSGGN++K+++A ++ P ++ILDEP+ G+D AK+ ++++I++
Sbjct: 381 LFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ ++IL + M E + RI +M G++
Sbjct: 441 F--KAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 39/206 (18%)
Query: 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDI-- 1424
+AV ++ + + F+G +G GK+T L +I G + +G GK++
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG--FRVEGKVTFHGKNLYA 81
Query: 1425 -RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF 1479
DP RR IG Q F ++ +++ ARI G Y+ D M++LVE
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPK-----SIYDNIAYGARING---YKGD---MDELVER 130
Query: 1480 DLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
L + A K+ +LSGG +++L +A A+ P ++++DEP + +DPI+ +
Sbjct: 131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI 190
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEA 1556
E++ L + +I+ TH+M +A
Sbjct: 191 EELMHELKEQY---TIIIVTHNMQQA 213
|
Length = 264 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 1e-12
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 481 ILALLGHNGAGKSTTISMLVGLIPPTTG-----DALVFGKNI--TADMDEIRKGLGVCPQ 533
+ +L+G G+GK+T + L + +G D L+ G++I D+ E R+ +G+ Q
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQ 108
Query: 534 YDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR----ALSGGM 589
FP + L K V + V + EVGL D V + LSGG
Sbjct: 109 RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEEL 649
++ L L L + +V++LDEPTS +DP + + I+ + +++ TH++ +A +
Sbjct: 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARI 228
Query: 650 GDRIAIMANGSL 661
DR A+ +G L
Sbjct: 229 SDRAALFFDGRL 240
|
Length = 276 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 1e-12
Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 66/185 (35%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1438
++ ++ G+ G +G NGAGK+T L +I+GE P +G +G ++ IGY
Sbjct: 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTVK---------IGYF 68
Query: 1439 PQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498
Q LSGG K
Sbjct: 69 EQ---------------------------------------------------LSGGEKM 77
Query: 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1558
+L++A ++ +P +++LDEP+ +D + + L G VIL +H
Sbjct: 78 RLALAKLLLENPNLLLLDEPTNHLDLESIEA---LEEALKEYPG--TVILVSHDRYFLDQ 132
Query: 1559 LCTRI 1563
+ T+I
Sbjct: 133 VATKI 137
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 70/259 (27%), Positives = 120/259 (46%), Gaps = 37/259 (14%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+ I ++NL K + G + +H + V+ GE +G +G+GKTT L I+ E P
Sbjct: 2 SAIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP 55
Query: 1413 TDGTAFIFGKDIRSDP-----------KAARRLIGYCPQFDALLEYLTVQEH-LELYARI 1460
GT I DI D + R+ +G+ Q L + TV E+ +E +
Sbjct: 56 EAGT--IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV 113
Query: 1461 KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT--LSGGNKRKLSVAIAMIGDPPIVILDEP 1518
KG + E L + L K+ S+ LSGG ++++++A A+ P +++ DEP
Sbjct: 114 KGEPKEEATARARELLAKVGL--AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171
Query: 1519 STGMDPIAKRFMWEVISRL-STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL------ 1571
++ +DP + EV++ + Q K +++ TH M+ A+ + R M G++
Sbjct: 172 TSALDP---ELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228
Query: 1572 -RCIGSPQHLKTRFGNFLE 1589
PQ +TR FLE
Sbjct: 229 KALFADPQQPRTR--QFLE 245
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 13/203 (6%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527
+ + L + L ++G +G+GKST +LVG+ PPT+G + G ++ D +++ +
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411
Query: 528 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV-- 582
+G PQ D+ LF T+ E++ F + E+++E+ V E + L + +
Sbjct: 412 IGYLPQ-DVELFDG-TIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 583 --RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLT 639
LSGG +++++L AL GD +V+LDEP S +D I K G +++
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 640 THSMDEAEELGDRIAIMANGSLK 662
H A D+I ++ +G +
Sbjct: 529 AHRP-SALASVDKILVLQDGRIA 550
|
Length = 580 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + YP R D A+ L +V+ GE +G +GAGK+T ++ P
Sbjct: 338 IEFEQVNFAYPA--RPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYAR-------IKGVAEY 1466
G + G D+R DP R + PQ D +L +V E++ Y R ++ A
Sbjct: 395 GRILLDGVDLRQLDPAELRARMALVPQ-DPVLFAASVMENIR-YGRPDATDEEVEAAARA 452
Query: 1467 RMDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+ L E +D + + TLSGG ++++++A A++ D PI++LDE ++ +D
Sbjct: 453 AHAHEFISALPEGYD--TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510
Query: 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+++ + + + L +G+T +I+ H + RI +M G++ G+ L
Sbjct: 511 SEQLVQQALETLM--KGRTTLII-AHRLATVLK-ADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 57/250 (22%)
Query: 453 RKLHKVY---ATKRGNCC---------AVNSLQLTLYENQILALLGHNGAGKSTTISMLV 500
RKL Y G VN + TL + +IL + G GAG++ + +L
Sbjct: 240 RKLEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299
Query: 501 GLIPPTTGDALVFGKNITAD------------MDEIRKGLGVCPQYDILFPELTVREHLE 548
G +P T+G + G + + E RK D L ++V+E++
Sbjct: 300 GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKR-------DGLVLGMSVKENMS 352
Query: 549 MFAV---------LKGVKEELLESVVAEMVDEVGLADKVNI-------VVRALSGGMKRK 592
+ A+ LK E + D + L NI + LSGG ++K
Sbjct: 353 LTALRYFSRAGGSLKHADE------QQAVSDFIRL---FNIKTPSMEQAIGLLSGGNQQK 403
Query: 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGD 651
+++ L+ KV+ILDEPT G+D + + +QLI + K G I+L + M E + D
Sbjct: 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463
Query: 652 RIAIMANGSL 661
RI +M G +
Sbjct: 464 RILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---SMLVGLIP--PTTGDALVFGKNI- 517
G A+ + L + +I+A +G +G GKST + + + LIP G L +NI
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 518 --TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---EELLESVV--AEMVD 570
+ ++R+ +G+ Q FP+ ++ E++ G K +EL+E + A + +
Sbjct: 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE 149
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
EV DK+ ALSGG +++L + A+ V+++DEP S +DP S R +L ++
Sbjct: 150 EV--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207
Query: 631 KKGRIILLTTHSMDEAEELGDRIA 654
K+ I++ TH+M +A + D A
Sbjct: 208 KEQYTIIMVTHNMQQASRVADWTA 231
|
Length = 274 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-12
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 25/240 (10%)
Query: 441 KQQEVDGRCI-QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
K G + ++ L R AV + + +I+ + G G G+S + +
Sbjct: 248 KPPSTPGEVVLEVEDLS---VKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 500 VGLIPPTTGDALVFGKNIT--ADMDEIRK-GLGVCPQYDI---LFPELTVREHL------ 547
GL P +G L+ GK++ E R+ GL P+ L +L++ E+L
Sbjct: 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364
Query: 548 -EMFAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605
+ F+ + + E+++E + A + R+LSGG ++KL L L +
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDL 424
Query: 606 VILDEPTSGMD----PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+I +PT G+D + +L++ G+ +LL + +DE EL DRIA++ G +
Sbjct: 425 LIAAQPTRGLDVGAIEFIHE---RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-12
Identities = 61/245 (24%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 1365 PGGKRSDAK----VAVHSLT--------FSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
PG +R A + V LT V+AGE G G GAG+T + G
Sbjct: 256 PGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIG--YCPQ--------FDALLEY----LTVQEH----- 1453
G + GK+I + A R G Y P+ DA L + LT
Sbjct: 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIK 375
Query: 1454 -------LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506
LE Y R + HA++ + TLSGGN++K+ +A +
Sbjct: 376 PARENAVLERYRRALNIK-----------------FNHAEQAARTLSGGNQQKVLIAKCL 418
Query: 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566
P ++I+DEP+ G+D A+ ++++I ++ + AV+ + + E + + R+ +M
Sbjct: 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN--VAVLFISSDLEEIEQMADRVLVM 476
Query: 1567 VGGQL 1571
G++
Sbjct: 477 HQGEI 481
|
Length = 510 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 26/227 (11%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEY-PTDGTAFIFGKDIR 1425
+ K + + +V+ GE +G NG+GK+T I G +Y T+G G+DI
Sbjct: 12 EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71
Query: 1426 SDPKA--ARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDV--VMEKLVEFD 1480
AR I Q+ + +T + L +G + + + EK
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 1481 LLKHAKKPSF-------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
L F SGG K++ + ++ +P + ILDEP +G+D A + + E
Sbjct: 132 L-----DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 1534 ISRLSTRQGKTAVILTTHS---MNEAQALCTRIGIMVGGQLRCIGSP 1577
I+ L R+ V++ TH ++ + ++ ++ G++ G P
Sbjct: 187 INAL--REEGRGVLIITHYQRLLDYIKP--DKVHVLYDGRIVKSGDP 229
|
Length = 251 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 16/230 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I + N+ K Y KV + ++ + G +G NGAGK+T LSM+S
Sbjct: 1 MITIENVSKSY------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD 54
Query: 1414 DGTAFIFGKDIRSDPKA--ARRLIGYCPQFDALLEYLTVQEHLEL----YARIKGVAEYR 1467
G I G ++ S P A++L Q + + LTV++ + Y++ + E R
Sbjct: 55 SGEITIDGLELTSTPSKELAKKL-SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR 113
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
++ E + L + + LSGG +++ +A+ + D V+LDEP +D
Sbjct: 114 --RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
+ +++ RL+ GKT +++ H +N A I + G++ GSP
Sbjct: 172 VQIMKILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQGSP 220
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEYP---TDGTAFIFGKDIRS--- 1426
AV + +++ F+G +G GK+T L ++ E P +G + G+D+
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLKHA 1485
DP A RR IG Q +++++++ ++ GV + +D++V + L +L
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV 138
Query: 1486 K----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
K KP LSGG +++L +A A+ +P ++++DEP + +DPI+ + ++I+ L +Q
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL--KQ 196
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
T VI+ TH+M +A + + L G P L
Sbjct: 197 DYTIVIV-THNMQQAARVSDQTAFF---NLEATGKPGRL 231
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 23/228 (10%)
Query: 445 VDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
+ + KL K++ GN AV + + +N+I +G +G GKST + L +
Sbjct: 3 SEAPIVMDCKLDKIF---YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND 59
Query: 505 PTTGDAL----------VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK 554
G V+GK + D +R+ +G+ Q F +++ +++ L
Sbjct: 60 LVKGFRFEGHVHFLGQDVYGKGV--DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN 116
Query: 555 GVKEELLESVV-----AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609
K +L + V A + DEV DK+ + +LSGG +++L + A+ + +V++LD
Sbjct: 117 RYKGDLGDRVKHALQGAALWDEV--KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174
Query: 610 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA 657
EP S +DP + R +L+ ++KK I L TH+M +A + D A +
Sbjct: 175 EPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222
|
Length = 261 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 54/208 (25%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRSDPK 1429
A+ S+ + A + +G +G GK+T L ++ E G + G+DI +
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1430 AARRLIGYCPQFDALLEY-LTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLLKHAK- 1486
A I F + +++ E++ R +G+ + + +D+VV L L K
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD 137
Query: 1487 ---KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+F LSGG +++L +A + +P ++++DEP++ +DPIA + E++ L ++
Sbjct: 138 RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNY 195
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQL 1571
T VI+ THSM +A+ + R + G+L
Sbjct: 196 TIVIV-THSMQQARRISDRTAFFLMGEL 222
|
Length = 249 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGE---EYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ F++ GE +G +G GK+T LS + G ++ G ++ + + P AA+R I
Sbjct: 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-AAQRQI 79
Query: 1436 GYCPQFDALLEYLTVQEHL--ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1493
G Q L +L+V ++L L A +KG A + +E+ D H + P+ TLS
Sbjct: 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALER-SGLDGAFH-QDPA-TLS 136
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMD-PIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
GG + ++++ A++ P ++LDEP + +D + +F V S + R + TH
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV--RAAGIPTVQVTHD 194
Query: 1553 MNEAQA 1558
+ + A
Sbjct: 195 LQDVPA 200
|
Length = 213 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT----ADMDE 523
AV+ + L LYE + L ++G +G GKST ++GL+ T G+ GK++ +
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 524 IRKGLGVCPQYDI--LFPELTV----REHLEMFAVLKGVKEELLESVVAEMVDEVGLADK 577
+R + + Q + L P +T+ E L + K ++E+ + V A M+ +VGL
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKA-MMLKVGLLP- 152
Query: 578 VNIVVR---ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-- 632
N++ R SGG +++ + ALI + K++I DEP S +D L++++++
Sbjct: 153 -NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 633 GRIILLTTHSMDEAEELGDRIAIM 656
G ++ H + + + DR+ +M
Sbjct: 212 GLSLIFIAHDLAVVKHISDRVLVM 235
|
Length = 331 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+ + N+ K + ++ ++ V +++ SV AGEC G +G+GK+T L +
Sbjct: 2 PTPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61
Query: 1411 YPTDGTAFIFGKDIRSDPKAA---------RRLIGYCPQFDALLEYLTVQEHLELYARIK 1461
P +G + + D A R IGY QF L + R+
Sbjct: 62 LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF------------LRVIPRVS 109
Query: 1462 GVAEYRMDDVVMEKLVEF------------DLLKHAKKPS-------FTLSGGNKRKLSV 1502
+ DVV E L+ DLL P T SGG ++++++
Sbjct: 110 AL------DVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163
Query: 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1562
A I D PI++LDEP+ +D + + E+I + A++ H +A+ R
Sbjct: 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIR--EAKARGAALVGIFHDEEVREAVADR 221
Query: 1563 IGIM 1566
+ +
Sbjct: 222 LLDV 225
|
Length = 235 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 57/204 (27%), Positives = 107/204 (52%), Gaps = 16/204 (7%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPPTT--GDALVFGKNIT 518
G AV ++ + ++ AL+G +G GKST +++ + LI + G L G ++
Sbjct: 24 GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83
Query: 519 A---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---EELLESVV--AEMVD 570
D E+R+ +G+ Q FP+ ++ E++ A + G +EL+E + A + D
Sbjct: 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWD 142
Query: 571 EVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
E DK+N +LSGG +++L + + + +V+++DEP S +DP S + + ++
Sbjct: 143 EC--KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
Query: 631 KKGRIILLTTHSMDEAEELGDRIA 654
KK I++ TH+M +A + D A
Sbjct: 201 KKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 5e-12
Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 24/271 (8%)
Query: 441 KQQEVDGR-CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
E+D R + + L+ + ++ AV +L +L + LA++G +G+GKS T L
Sbjct: 3 HSDELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALAL 62
Query: 500 VGLIPPTTGDA--------------LVFGKNITADMDEIRKG-LGVCPQYDI--LFPELT 542
+ L+ G + + A M +R + + Q + L P T
Sbjct: 63 MRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122
Query: 543 VREHL-EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR---ALSGGMKRKLSLGIA 598
V E + E + +G E M+D+V + + I+ R LSGGM++++ + +A
Sbjct: 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMA 182
Query: 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIM 656
L V+I DEPT+ +D QLIK ++K ++ TH M E+ DR+ +M
Sbjct: 183 LSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242
Query: 657 ANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 687
G GS + H YT L+ + P
Sbjct: 243 YQGEAVETGSVEQIFHAPQHPYTRALLAAVP 273
|
Length = 623 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-12
Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 21/201 (10%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-MDEIRKG 527
V + LT+ +++ L+G NG+GKST +L GL P +G+ L+ GK ++A+ +++ RK
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK- 397
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-----NIVV 582
LF + HL F L G + + ++ + + + LA K
Sbjct: 398 ---------LFSAVFSDYHL--FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN 446
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKK-GRIILLTT 640
LS G K++L+L +AL+ + +++LDE + DP R +Q L+ +K+ G+ I +
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506
Query: 641 HSMDEAEELGDRIAIMANGSL 661
H D DR+ M NG L
Sbjct: 507 HD-DHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 69/285 (24%), Positives = 129/285 (45%), Gaps = 32/285 (11%)
Query: 1349 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1408
DN + + +++ YP K+ A++ ++FS+ G +G NG+GK+T +I+G
Sbjct: 1 MKDNIVEF-KHVSFTYPDSKKP----ALNDISFSIPRGSWTALIGHNGSGKSTISKLING 55
Query: 1409 EEYPTD---GTAFIFGKDIRSDPK-AARRLIGYCPQF-DALLEYLTVQEHLELYARIKGV 1463
P D + G + + R +G Q D TV + + + V
Sbjct: 56 LLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV 115
Query: 1464 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
M +V + L + +L + LSGG K+++++A + +P I+ILDE ++ +D
Sbjct: 116 PRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH---- 1579
P K + ++I +L + T VI TH ++EA + ++ ++ G+L GSP
Sbjct: 176 PAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 1580 --------LKTRFGNFLELEVKPTEVS---SVDLED-----LCQI 1608
L F L+ ++K +S ++ E+ LCQ+
Sbjct: 234 VEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEKLVQYLCQL 278
|
Length = 282 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%)
Query: 483 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIR-KGLGVCPQYDILFPEL 541
LLG NG+GKST + +L G + P G + G ++ R + + + Q L
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90
Query: 542 TVRE--------HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
TVR+ H ++A VV + L+ + + LSGG ++++
Sbjct: 91 TVRDVVALGRIPHRSLWAGDSPHDAA----VVDRALARTELSHLADRDMSTLSGGERQRV 146
Query: 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI-ILLTTHSMDEAEELGDR 652
+ AL + K+++LDEPT+ +D + T L++++ + ++ H ++ A D
Sbjct: 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDH 206
Query: 653 IAIMANGSLKCCG 665
+ ++ G + G
Sbjct: 207 VVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 30/219 (13%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IPPTTGDALVF--GKNI---TA 519
A+ + + + E + AL+G +G GKST + L + I D V G++I
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 520 DMDEIRKGLGVCPQYDILFPELTVREHLE------------MFAVLKG-----VKEELLE 562
++ E+RK +G+ Q FP+ ++RE++ + A L G ++EL+E
Sbjct: 120 NLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 563 SVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
+ A + DEV D+++ LSGG +++L + L D +V+++DEP S +DP +
Sbjct: 179 RSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236
Query: 621 RLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
LI+++ + +++ TH+M +A + D+ A+ G
Sbjct: 237 SKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275
|
Length = 305 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 6e-12
Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 30/243 (12%)
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
Q+ + ++ L ++T G+ AVN L +L + L ++G +G+GKS T L
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 500 VGLIPP---TTGDALVFGKNI----TADMDEIRKGLGVCPQYDILF--------PELTVR 544
+GL+ G A G+ I +++++R Q ++F P + V
Sbjct: 63 MGLLAANGRIGGSATFNGREILNLPEKELNKLR-----AEQISMIFQDPMTSLNPYMRVG 117
Query: 545 EHL-EMFAVLKGV--KEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRKLSLGIA 598
E L E+ + KG+ E ESV M+D V + + ++ + SGGM++++ + +A
Sbjct: 118 EQLMEVLMLHKGMSKAEAFEESV--RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMA 175
Query: 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIM 656
L+ K++I DEPT+ +D L+ ++K+ I++ TH + + D++ +M
Sbjct: 176 LLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235
Query: 657 ANG 659
G
Sbjct: 236 YAG 238
|
Length = 330 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 7e-12
Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTT---TLSMISGEEYPT--DGTAFIFGKDI---RS 1426
A+ ++ + + +G +G GK+T TL+ IS E P +G FG++I R
Sbjct: 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLKHA 1485
+ RR IG Q +++ E++ RI + + +D++V L L +
Sbjct: 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV 140
Query: 1486 K----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
K K + LSGG +++L +A A+ P ++++DEP + +DPIA + E+I L +
Sbjct: 141 KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL---R 197
Query: 1542 GKTAVILTTHSMNEAQALC----------TRIGIMV--GGQLRCIGSPQHLKTR 1583
+ + + TH+M +A + +RIG MV G + +P +TR
Sbjct: 198 SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTR 251
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-12
Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 39/255 (15%)
Query: 1358 RNLRKVYPGGK-----RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+LR +P D AV ++ +++ G+ G +G +G+GK+T + P
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IP 338
Query: 1413 TDGTAFIFGKDI----RSDPKAARRLIGYCPQ--FDALLEYLTVQEHLELYARI--KGVA 1464
+ G G+DI R + + RR + Q + +L +TV + +E R+ ++
Sbjct: 339 SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLS 398
Query: 1465 EYRMDDVVMEKLVEFDLLKHAKKPSFTL-------SGGNKRKLSVAIAMIGDPPIVILDE 1517
D V+E L E L T SGG ++++++A A+I P +++LDE
Sbjct: 399 AAERDQRVIEALEEVGL------DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDE 452
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGK--TAVILTTHSMNEAQALCTRIGIMVGGQL---- 1571
P++ +D + +V+ L Q K + + +H + +ALC R+ +M G++
Sbjct: 453 PTSALD---RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509
Query: 1572 ---RCIGSPQHLKTR 1583
+PQH TR
Sbjct: 510 PTEAVFANPQHEYTR 524
|
Length = 534 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 483 ALL--GHNGAGKSTTISMLVGLIPPTTGDALVFGK-NITADMDEIRKGLGVCPQYDILFP 539
ALL G NGAGK+T + +L GL+ +G + GK D LG P L
Sbjct: 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG---LKA 95
Query: 540 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 599
+L+ E+L L G + + + +V GLA + +VR LS G K++L+L
Sbjct: 96 DLSTLENLHFLCGLHGRRAKQMPGSALAIV---GLAGYEDTLVRQLSAGQKKRLALARLW 152
Query: 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIK-KIKKGRIILLTTH 641
+ + + +LDEP + +D + L ++I ++ G L+TTH
Sbjct: 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 8e-12
Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 29/227 (12%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGY 1437
++F++ AG+ +G +G+GK+T L ++ + G+ I G+DIR + RR IG
Sbjct: 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79
Query: 1438 CPQFDALLEYLTVQEHLELYAR--------IKGVAEYRMDDVVMEKLVEFDL------LK 1483
PQ D +L T+ ++ Y R I+ ++ D +M +D LK
Sbjct: 80 VPQ-DTVLFNDTIGYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK 137
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
LSGG K+++++A A++ +PPI++LDE ++ +D +R + + +S G+
Sbjct: 138 --------LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GR 187
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
T I+ H ++ +I ++ G++ G+ + L + G + E+
Sbjct: 188 T-TIVIAHRLSTI-VNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 47/200 (23%), Positives = 100/200 (50%), Gaps = 11/200 (5%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD------- 520
+ ++ LT+ + +AL G +GAGKST + L P +G LV + D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 521 -MDEIRK-GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV 578
+ E+R+ +G Q+ + P ++ E + + +GV E + E++ + + +++
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142
Query: 579 NIVVRA-LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRII 636
+ A SGG ++++++ I D +++LDEPT+ +D + ++ +LI + K +G +
Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202
Query: 637 LLTTHSMDEAEELGDRIAIM 656
+ H + E + DR+ +
Sbjct: 203 IGIFHDEEVRELVADRVMDV 222
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 9e-12
Identities = 66/284 (23%), Positives = 130/284 (45%), Gaps = 44/284 (15%)
Query: 1305 TRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVY 1364
T + + + SS + L+ +++ +DT D + D +I R+L V+
Sbjct: 2 TNNEMTSDESS--DGLITTTTATDTTDPSGDPAASSGE----------TVIEARDL-NVF 48
Query: 1365 PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFI 1419
G ++ A+ ++ + + +G +G GK+T L I+ + +G
Sbjct: 49 YGDEQ-----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103
Query: 1420 FGKDIRS---DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
GK++ DP A RR IG Q F ++ +++ +I+G +D+ V
Sbjct: 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-----SIYDNVAYGLKIQGYDG-DIDERV 157
Query: 1473 MEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
E L L K LSGG +++L +A A+ DP ++++DEP++ +DP+A
Sbjct: 158 EESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI-MVGGQL 1571
+ ++I L+ + V++ TH+M +A + + + + GG+L
Sbjct: 218 KIEDLIEELAE---EYTVVIVTHNMQQAARISDKTAVFLTGGEL 258
|
Length = 285 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 9e-12
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 21/230 (9%)
Query: 450 IQIRKLHKVYAT-----KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP 504
+ + L YA K + +N++ L+L + +ALLG +G GKST +LVGL
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 505 PTTGDALVFGKNIT----ADMDEIRKGLGVCPQYDI--LFPELTVREHL-EMFAVLKGVK 557
P+ G+ G+ + A R+ + + Q I + P TVRE + E L +
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123
Query: 558 EELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+ + +EM+ V L D V + LSGG +++ L AL + K++ILDE S +D
Sbjct: 124 KAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
Query: 617 PYSMRLTWQLIKKIKK-----GRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ L +I+ +KK G L TH + E R+ +M NG +
Sbjct: 184 ---LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 9e-12
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
A++ L+++R+ YP G + +V V ++ + AGE +G +G+GK+T ++++ +
Sbjct: 2 TALLELKDIRRSYPSG---EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD 58
Query: 1411 YPTDGTAFIFGKDI---RSDPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE 1465
PT GT + G+D+ +D A R G+ Q LL +LT +++E+ A G+
Sbjct: 59 KPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER 118
Query: 1466 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+ E L L + LSGG ++++S+A A++ +++ DEP+ +D
Sbjct: 119 KQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178
Query: 1526 AKRFMWEVISRLST--RQGKTAVILTTHSMNEAQA 1558
+ EV++ L +G T +I+T AQA
Sbjct: 179 SGE---EVMAILHQLRDRGHTVIIVTHDPQVAAQA 210
|
Length = 648 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-12
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 6/198 (3%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK--NITADMDEIR 525
A++++ L + + I AL+G NGAGKST + L G+ +G L GK + + + +
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 526 KGLGVCPQYDILFPELTVREHLEMFAV-LKG--VKEELLESVVAEMVDEVGLADKVNIVV 582
G+ + Q L + +V +++ + KG V ++ + + DE+ + V
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV 132
Query: 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTH 641
LS + + + A ++K+VI+DEPTS + + + +I+K+K +G I+ +H
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
Query: 642 SMDEAEELGDRIAIMANG 659
M+E +L D I I+ +G
Sbjct: 193 KMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-11
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 17/222 (7%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ K +PG K A+ ++F +AG+ +G NGAGK+T L ++SG P G+
Sbjct: 7 FDGIGKTFPGVK------ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 1417 AFIFGKDIR----SDPKAARRLIGYCPQFDALLEYLTVQEHL---ELYARIKGVAEYRMD 1469
I G+++R + AA I Y Q L+ +TV E+L +L + V ++
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIY--QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN 118
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
E+L + P LS G ++ + +A A+ + ++ DEP++ +
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
++ VI L R ++ +H M E ALC I + G+
Sbjct: 179 LFRVIREL--RAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
Length = 501 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 1367 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT------TLSMISGEEYPTDGTAFIF 1420
KR + L FSV AGE +G +G+GK+T TL I + +G
Sbjct: 7 TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH 66
Query: 1421 -----GKDIRSDPKAARRL---IGYCPQFDALLEYLTVQEHLELY-ARIKGVAEYRMDDV 1471
G + +D K R++ IG Q L + TV +++ + G+A +
Sbjct: 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR 126
Query: 1472 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
ME L L A LSGG ++++++A A+ P +++ DE ++ +DP +
Sbjct: 127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
VI RL++ T ++L TH M A+ R+ G++ G P +
Sbjct: 187 NVIRRLASEHDLT-MLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-11
Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT--GDALVFGKNITAD--MDE 523
A++++ L + +I++L G NGAGKST + +L G+ P T G+ + G+ + A D
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV----------AEMVDEVG 573
R G+ + Q L EL+V E+ +F + E+ + +++ ++
Sbjct: 80 ERAGIAIIHQELALVKELSVLEN--IF-----LGNEITPGGIMDYDAMYLRAQKLLAQLK 132
Query: 574 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K 632
L V L G ++ + + AL ++++ILDEPT+ + + +I+ +K
Sbjct: 133 LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANG 659
G + +H ++E + + D I ++ +G
Sbjct: 193 GIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 1374 VAVHSLTFS-------------VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF 1420
+A H+L FS V AGE G NGAGKTT L +++G + G I
Sbjct: 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
Query: 1421 GKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD 1480
GK ++ R + Y L L+ E+L + G +M L
Sbjct: 72 GKTATRGDRS--RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG---SALAIVG 126
Query: 1481 LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1540
L + LS G K++L++A + P+ +LDEP +D + +IS
Sbjct: 127 LAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
Query: 1541 QGKTAVILTTHSMNEAQALCTRI 1563
G A ++TTH A + TR+
Sbjct: 187 GG--AALVTTHGAYAAPPVRTRM 207
|
Length = 214 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
G ++ + L L +IL LLG NGAGKST + +++GL+ P G + +
Sbjct: 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG--------VIKRNGK 66
Query: 524 IRKGLGVCPQ---YDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVN 579
+R +G PQ D P LTV F L+ G K + + + V ++
Sbjct: 67 LR--IGYVPQKLYLDTTLP-LTV----NRFLRLRPGTK----KEDILPALKRVQAGHLID 115
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIIL 637
++ LSGG +++ L AL+ ++++LDEPT G+D + LI ++++ +L
Sbjct: 116 APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL 175
Query: 638 LTTHSM 643
+ +H +
Sbjct: 176 MVSHDL 181
|
Length = 251 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK---AARRL 1434
+L FS+ G +G NG GK+T +SG P G GK + + A R+
Sbjct: 21 NLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78
Query: 1435 IGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1493
+ Q + + Y + + R GV E + V E L D +P LS
Sbjct: 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLS 138
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1553
G K+++++A A++ ++LDEP+ G+DP + M +I R+ QG VI+++H +
Sbjct: 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI-VAQGNH-VIISSHDI 196
Query: 1554 NEAQALCTRIGIMVGGQLRCIGSP 1577
+ + + ++ GQ+ G+P
Sbjct: 197 DLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 46/265 (17%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GE 1409
I+ +++L +Y G KR AV+ ++ ++ +G +G GK+T L I+ +
Sbjct: 19 EHILEVKDL-SIYYGEKR-----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMND 72
Query: 1410 EYP---TDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYA- 1458
P ++G G +I + RR IG Q F + Y + L+ YA
Sbjct: 73 LIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI-YNNITHALK-YAG 130
Query: 1459 -RIKGVAEYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIV 1513
R K V +D++V E L + L K + +LSGG +++L +A + P ++
Sbjct: 131 ERRKSV----LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186
Query: 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-- 1571
+LDEP++ +DPI+ + E+I+ L + + ++I+ TH+M +A + R + G L
Sbjct: 187 LLDEPASALDPISNAKIEELITEL---KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243
Query: 1572 -----RCIGSPQHLKT------RFG 1585
+ SP+ KT RFG
Sbjct: 244 YDQTEQIFTSPKQQKTEDYINGRFG 268
|
Length = 268 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 7/195 (3%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI-RKG 527
+N++ +L + + G +G GKST + ++ LI PT+G L G++I+ EI R+
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALS 586
+ C Q LF + TV ++L ++ + + ++ + ++ L D + + LS
Sbjct: 83 VSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPD--PAIFLDDLERFALPDTILTKNIAELS 139
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMD 644
GG K+++SL L KV++LDE TS +D + ++I + ++ +L TH D
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199
Query: 645 EAEELGDRIAIMANG 659
E I + +
Sbjct: 200 EINHADKVITLQPHA 214
|
Length = 225 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGV 530
L LT ++ L+GHNG+GKST + ML PP+ G+ L+ + + + + +
Sbjct: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89
Query: 531 CPQYDILFPELTVREHLEM-----FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRAL 585
PQ +TVRE + + L E V E + VGL + +V +L
Sbjct: 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLAHRLVDSL 148
Query: 586 SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
SGG +++ + + + DS+ ++LDEPTS +D
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 47/195 (24%), Positives = 104/195 (53%), Gaps = 14/195 (7%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTL---SMISGEEYPTDGTAFIFGKDIRS-DP 1428
K A+ + ++ + +G +G GK+T L + ++ + DG I GKD+++ D
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM-----EKLVEFDLLK 1483
A R+ +G Q + ++ E++ ++ G+ + + ++ + +K+ F+ +K
Sbjct: 75 VALRKNVGMVFQQPNVF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 1484 HA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
K+ + LSGG +++L +A A+ P +++LDEP++ +DPI+ + E++ LS
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--- 190
Query: 1543 KTAVILTTHSMNEAQ 1557
++I+ TH+M + +
Sbjct: 191 NLSMIMVTHNMQQGK 205
|
Length = 246 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 61/225 (27%), Positives = 118/225 (52%), Gaps = 15/225 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I + K + G +N + L + Q++ALLG +G+GK+T + ++ GL T+G
Sbjct: 3 IEIANIKKSF----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLESVV 565
G +++ RK +G Q+ LF +TV ++ L + + +++ V
Sbjct: 59 IRFHGTDVSRLHARDRK-VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP-YSMRL-T 623
++++ V LA + LSGG K++++L AL + ++++LDEP +D L
Sbjct: 118 TQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR 177
Query: 624 W--QLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
W QL +++K + + TH +EA E+ DR+ +M+ G+++ G+
Sbjct: 178 WLRQLHEELKFTSVFV--THDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 23/228 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKST---TISMLVGLIPP- 505
++ R + Y K+ A+ + L + E + A +G +G GKST ++ + I
Sbjct: 20 MRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGC 75
Query: 506 -TTGDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV---KE 558
TG + G++I D+ E+R +G+ Q FP+ ++ E++ + G+ K
Sbjct: 76 RVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKA 134
Query: 559 ELLESVV-----AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
EL E V A + +EV D+++ LSGG +++L + A+ +V+++DEP S
Sbjct: 135 ELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCS 192
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+DP + +LI ++++ I++ THSM +A + R A G+L
Sbjct: 193 ALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240
|
Length = 267 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
L L + + L+G NG GKST L GL+ P G L GK +D ++GL
Sbjct: 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK----PLDYSKRGLLAL 75
Query: 532 ----------PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 581
P+ I + ++ + + GV E + V E + V +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQHFRHQP 133
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTT 640
++ LS G K+++++ AL+ ++ ++LDEPT+G+DP +I++I +G +++++
Sbjct: 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISS 193
Query: 641 HSMDEAEELGDRIAIMANGSLKCCGS 666
H +D E+ D + ++ G + G+
Sbjct: 194 HDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 21/206 (10%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR- 1433
A+ +F+V G +G NG+GK+T + G G I G+ R +A ++
Sbjct: 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR---QALQKN 78
Query: 1434 LIGYCPQ-------FDALLEYLTVQE---HLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
L+ Y PQ F L+E + + H+ R K R +V L D+++
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK----RDRQIVTAALARVDMVE 134
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+ LSGG K+++ +A A+ +++LDEP TG+D + + ++ L +GK
Sbjct: 135 FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGK 193
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGG 1569
T ++++TH++ C +MV G
Sbjct: 194 T-MLVSTHNLGSVTEFCDYT-VMVKG 217
|
Length = 272 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-11
Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL-- 528
L TL Q +AL+G +GAGK++ ++ L+G +P G + G + D + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSW 427
Query: 529 -GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-----VAEMVDEVGLADKVNIVV 582
G PQ P T+R+++ + +E L+ V+E + L ++ +
Sbjct: 428 VGQNPQ----LPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPL--LPQGLDTPI 479
Query: 583 R----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILL 638
LS G ++L+L AL+ ++++LDEPT+ +D +S +L Q + + + L+
Sbjct: 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539
Query: 639 TTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680
TH +++ + D+I +M +G + G L G+ TL
Sbjct: 540 VTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-11
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 20/202 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
+V + LT+ ++L L+G NG+GKST +L GL P +G+ L+ GK +TA ++ RK
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN-----IV 581
+ +F + + + L L + ++V + ++ + +A K+ I
Sbjct: 398 ------LFSAVFTDFHLFDQL-----LGPEGKPANPALVEKWLERLKMAHKLELEDGRIS 446
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIK-KGRIILLT 639
LS G K++L+L +AL + +++LDE + DP+ R +Q L+ ++ G+ I
Sbjct: 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI 506
Query: 640 THSMDEAEELGDRIAIMANGSL 661
+H D DR+ M NG L
Sbjct: 507 SHD-DHYFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 34/212 (16%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEY-PTDGTAFIFGKDIRS 1426
K + + +++ GE +G NG+GK+T I G +Y T+G G+DI
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
P R +G +L Q I GV + D + F
Sbjct: 69 LPPEERARLGI---------FLAFQYP----PEIPGV---KNADFLRYVNEGF------- 105
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
SGG K++ + ++ +P + ILDEP +G+D A R + EVI++L R+ +V
Sbjct: 106 ------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL--REEGKSV 157
Query: 1547 ILTTHSMNEAQAL-CTRIGIMVGGQLRCIGSP 1577
++ TH + R+ ++ G++ G
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-11
Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 25/229 (10%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433
+ ++ +++ +G +G+GK+T ++ G G + G ++ D R+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 1434 LIGYCPQ----FD-ALLEYL-------TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1481
I Y PQ F ++LE L Q+ + I AE + D M + +L
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEI---AEIKDDIENMPLGYQTEL 605
Query: 1482 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
+ ++SGG K+++++A A++ D ++ILDE ++ +D I ++ ++++ L Q
Sbjct: 606 SEE----GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQ 658
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
KT +I H ++ A+ +I ++ G++ GS L R G + L
Sbjct: 659 DKT-IIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 534
++ E++++ +LG NG GK+T I ML G++ P GD + ++ PQY
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-----------PQY 69
Query: 535 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 594
E TVR+ L ++ K E+ + + ++ V LSGG ++++
Sbjct: 70 IKADYEGTVRDLL--SSITKDFYTH--PYFKTEIAKPLQIEQILDREVPELSGGELQRVA 125
Query: 595 LGIALIGDSKVVILDEPTSGMD 616
+ L D+ + +LDEP++ +D
Sbjct: 126 IAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 42/255 (16%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ L K+Y GK ++F + GE G +G +G+GKTT L ISG P GT
Sbjct: 9 VSGLSKLYGPGK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62
Query: 1417 -AFIFGK----DIRSDPKAARRLI-----GYCPQ--FDALLEYLT----VQEHL-----E 1455
+ D+ + +A RR + G+ Q D L ++ + E L
Sbjct: 63 VTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR 122
Query: 1456 LYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1515
Y I+ A+ +++V E DL + P T SGG +++L +A ++ P +V +
Sbjct: 123 HYGNIRAEAQDWLEEV------EIDLDRIDDLPR-TFSGGMQQRLQIARNLVTRPRLVFM 175
Query: 1516 DEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL---- 1571
DEP+ G+D + + +++ L G AV++ TH + A+ L R+ +M GQ+
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELG-LAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
Query: 1572 ---RCIGSPQHLKTR 1583
R + P H T+
Sbjct: 235 LTDRVLDDPHHPYTQ 249
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 44/251 (17%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
R L K+Y K ++F + GE G +G +G+GKTT L+ +S P G
Sbjct: 10 RGLTKLYGPRK------GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
Query: 1418 FIFGK-----DIRSDPKAARRLI-----GYCPQF--DALLEYLT----VQEHL-----EL 1456
+ D+ + +A RR + G+ Q D L ++ + E L
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARH 123
Query: 1457 YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1516
Y I+ A ++ V E D + P+ T SGG +++L +A ++ P +V +D
Sbjct: 124 YGDIRATAGDWLERV------EIDAARIDDLPT-TFSGGMQQRLQIARNLVTHPRLVFMD 176
Query: 1517 EPSTGMD-PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL---- 1571
EP+ G+D + R + +++ L G AV++ TH + A+ L R+ +M G++
Sbjct: 177 EPTGGLDVSVQARLL-DLLRGLVRELG-LAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
Query: 1572 ---RCIGSPQH 1579
+ + PQH
Sbjct: 235 LTDQVLDDPQH 245
|
Length = 258 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 22/235 (9%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEYPT---DGTAFIFGKDI---RS 1426
AV ++ +G +G GK+T L I+ + P+ G + DI
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1427 DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
DP + RR +G Q F A+ Y V +L R+ + + ++++ +D +
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 1483 K-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
K K + LSGG +++L +A + P ++++DEP++ +DPI+ + E+I L
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-- 196
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 1596
K +I+ TH+M +A + G L G + + F E K TE
Sbjct: 197 -KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI------FTTPEKKQTE 244
|
Length = 252 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 4e-11
Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 44/262 (16%)
Query: 1349 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1408
+ D + L N+ YP + + L+ ++AGE LG G GK+T L +++
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQP----VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR 388
Query: 1409 EEYPTDGTAFIFGKDIRSDPKAA-RRLIGYCPQ----FDALLEYLTVQEHLELYARIKGV 1463
P G + G+ I +AA R+ I Q F A T++++L L A
Sbjct: 389 AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-----TLRDNLLLAA--PNA 441
Query: 1464 AEYRMDDVV----MEKLVEFDL-----LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514
++ + +V+ +EKL+E D L + LSGG +R+L +A A++ D P+++
Sbjct: 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLL 498
Query: 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH------SMNEAQALCTRIGIMVG 1568
LDEP+ G+D +R + E+++ + Q KT V++ TH + RI +M
Sbjct: 499 LDEPTEGLDAETERQILELLAEHA--QNKT-VLMITHRLTGLEQFD-------RICVMDN 548
Query: 1569 GQLRCIGSPQHLKTRFGNFLEL 1590
GQ+ G+ Q L + G + +L
Sbjct: 549 GQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 57/224 (25%), Positives = 117/224 (52%), Gaps = 22/224 (9%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-----------SD 1427
++ AG+ +G++G+GK+T L I+ E P+ G+ + G++IR +D
Sbjct: 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84
Query: 1428 PKAARRL---IGYCPQFDALLEYLTVQEH-LELYARIKGVAEYRMDDVVMEKLVEFDLL- 1482
+ +RL +G Q L ++TV E+ +E + GV++ + + L + +
Sbjct: 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE 144
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
K P+ LSGG ++++++A A+ +P +++ DEP++ +DP + +V+ L+ +G
Sbjct: 145 KADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEG 202
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
+T V + TH M A+ + + + + G++ G P+ + FGN
Sbjct: 203 RTMV-VVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV---FGN 242
|
Length = 256 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 37/216 (17%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
+ + ++ ++ G+ LG NGAGK+T + ++ G P +G I+ + K
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-------IKRNGKLR- 68
Query: 1433 RLIGYCPQ---FDALLEYLTVQEHLELYARIKGVAEYRMDDV--VMEKLVEFDLLKHAKK 1487
IGY PQ D L LTV L L K +D+ ++++ L+
Sbjct: 69 --IGYVPQKLYLDTTLP-LTVNRFLRLRPGTKK------EDILPALKRVQAGHLIDA--- 116
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
P LSGG +++ +A A++ P +++LDEP+ G+D + ++++I +L AV+
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD-CAVL 175
Query: 1548 LTTHSMNEAQA-----LCTRIGIMVGGQLRCIGSPQ 1578
+ +H ++ A LC + + C G+P+
Sbjct: 176 MVSHDLHLVMAKTDEVLC------LNHHICCSGTPE 205
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-11
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 16/219 (7%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ R++ K Y G V V + F++ AGE LG NGAGK+T + +I+G P
Sbjct: 11 LLCARSISKQYSG-------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP 63
Query: 1413 TDGTAFIFGKDI-RSDPKAARRL-IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
GT I G R P A +L I PQ L L+V+E++ + + +M
Sbjct: 64 DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
++ + DL A +L +++ + + ++ D I+ILDEP+ + P +
Sbjct: 124 LLAALGCQLDLDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
+ I L ++ +H + E + L RI +M G
Sbjct: 180 FSRIREL--LAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 13/198 (6%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR-----RLIGY 1437
V+ GE +G +G+GK+T L++++G + + G + G+ + + AR + +G+
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92
Query: 1438 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1497
Q L+ L E++EL A ++G + + + L + L K LSGG +
Sbjct: 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152
Query: 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL---STRQGKTAVILTTHSMN 1554
+++++A A G P ++ DEP+ +D R + I+ L R+ T +IL TH
Sbjct: 153 QRVALARAFNGRPDVLFADEPTGNLD----RQTGDKIADLLFSLNREHGTTLILVTHD-L 207
Query: 1555 EAQALCTRIGIMVGGQLR 1572
+ A C R +V GQL+
Sbjct: 208 QLAARCDRRLRLVNGQLQ 225
|
Length = 228 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1378 SLTFSVQAG-----ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
T V+ G E G LG NG GKTT + M++G P +G D +
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-----------DIEIEL 60
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLVEFDLLKHAKKP 1488
+ Y PQ+ TV++ L + Y ++ +E++++ ++
Sbjct: 61 DTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVP------ 114
Query: 1489 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM-WEVISRLSTRQGKTAVI 1547
LSGG +++++A + D I +LDEPS +D + +R M +VI R + KTA +
Sbjct: 115 --ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD-VEQRLMASKVIRRFAENNEKTAFV 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 50/208 (24%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 471 SLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDEIRK 526
L + +IL L+G NGAGKST ++ + GL+P +G G+ + A++ R
Sbjct: 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRA 72
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALS 586
L Q F + V ++L + + E + S + E+ + +GL DK+ V LS
Sbjct: 73 YL--SQQQTPPF-AMPVFQYLTLH-QPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLS 128
Query: 587 GGMKRKLSLGIALIG-------DSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILL 638
GG +++ L ++ ++++LDEP + +D +L+ ++ ++G +++
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188
Query: 639 TTHSMDEAEELGDRIAIMANGSLKCCGS 666
++H ++ DR+ ++ G L G
Sbjct: 189 SSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-11
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 30/246 (12%)
Query: 467 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNIT-AD 520
VN + L + + LAL+G +G+GKS T ++ L+P +GD G+++ A
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 521 MDEIRKGLGVCPQYDILFPELTV---------REHLEMFAVLKGVKEELLESVVAEMVDE 571
+R G + ++F E V ++ E+ ++ +G++ E + +D
Sbjct: 83 EQTLRGVRG--NKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDR 140
Query: 572 VGL---ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 628
VG+ A ++ LSGG ++++ + +AL+ +++I DEPT+ +D QL++
Sbjct: 141 VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200
Query: 629 KIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCC----GSSLFLKHQYGVGYTLTL 682
++++ +L TH++ +L DR+A+M NG +C ++LF + YT L
Sbjct: 201 ELQQELNMGLLFITHNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPTH--PYTQKL 256
Query: 683 VKSAPD 688
+ S P
Sbjct: 257 LNSEPS 262
|
Length = 529 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 5e-11
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 12/177 (6%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + L +L L G NGAGK+T + ++ GL+ P G+ L ++I D+ +K L
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGG 588
+ P LT+RE+ L + + E+ L ++ LS G
Sbjct: 77 CFVGHRSGINPYLTLREN-----CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSG 131
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI----KKGRIILLTTH 641
KR+++L + +K+ +LDEP +D S+ +I KI KG +LLT+H
Sbjct: 132 QKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT---IITKIQEHRAKGGAVLLTSH 185
|
Length = 200 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 5e-11
Identities = 50/222 (22%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----- 504
I++ L Y T++ + + + +Y++++ A++G +G GKST + L +
Sbjct: 8 IKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 505 PTTGDALVFGKNI---TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK---- 557
G F +NI +++ +R+ + + LFP ++V +++ + G +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLE 122
Query: 558 -EELLESVV--AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
++++ES + A++ DE+ K++ LSGG +++L + AL KV+++DEP G
Sbjct: 123 IDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
Query: 615 MDPYSMRLTWQLIK--KIKKGRIILLTTHSMDEAEELGDRIA 654
+DP + LI+ +++ +++ +H++ + L D A
Sbjct: 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222
|
Length = 261 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 29/230 (12%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG----LIPP 505
++I+ LH K + + LT+ + +I A++G NG+GKST + G +
Sbjct: 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-- 54
Query: 506 TTGDALVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLE--MFAVLKGVKEE-- 559
T+G L G+++ + DE R GL + QY P ++ E L + A EE
Sbjct: 55 TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPL 114
Query: 560 -------LLESVVAEM-VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEP 611
LL++ +A + +DE L VN SGG K++ + + + K+ ILDE
Sbjct: 115 DLLDFLKLLKAKLALLGMDEEFLNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEI 171
Query: 612 TSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELG-DRIAIMANG 659
SG+D ++++ + I +++ R L+ TH + D + ++ +G
Sbjct: 172 DSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 8e-11
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 38/262 (14%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKT-TTLSMI--- 1406
++ +RNL + + AV ++F ++AGE +G +G+GK+ T LS++
Sbjct: 3 TMPLLSIRNLSVAF--HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 1407 --SGEEYPTDGTAFIFGKDI-RSDPKAARRL----IGYCPQ--FDALLEYLTVQEHL-EL 1456
+P+ G+ G+D+ + + R + IG Q +L T+ + L E+
Sbjct: 61 PSPAAAHPS-GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 1457 YARIKGV----AEYRMDDVVMEKLVEFDLLKHAKKP----SFTLSGGNKRKLSVAIAMIG 1508
+G+ A R +L+E + +K LSGG ++++ +A+A+
Sbjct: 120 LRLHRGLSRAAARARA-----LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174
Query: 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1568
+P ++I DEP+T +D + + +++ L G A++ TH + + R+ +M
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQH 233
Query: 1569 GQL-------RCIGSPQHLKTR 1583
G++ +PQH TR
Sbjct: 234 GEIVETGTTETLFAAPQHPYTR 255
|
Length = 534 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 51/233 (21%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--- 1408
II ++ Y GK A+ + E +G +G GK+T L ++
Sbjct: 3 KKIITSSDVHLFY--GK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56
Query: 1409 --EEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV 1463
G + G++I D R+ +G Q + ++ E++ R+ GV
Sbjct: 57 LIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYGLRLAGV 115
Query: 1464 AEYR-MDDVVMEKL----VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
+ +D+ V L + ++ H + + +LSGG ++++ +A + P +++LDEP
Sbjct: 116 KDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
++ +DPI+ ++ + L + + +IL THSM++A + + + G L
Sbjct: 176 TSALDPISST---QIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-10
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 28/204 (13%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKGLGV 530
L L + + + ++G +G+GKST +L L P G LV G ++ AD +R+ +GV
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
Query: 531 CPQYDILF------------PELTVREHLEMFAVLKGVKE---ELLESVVAEMVDEVGLA 575
Q ++LF P EH+ A L G + EL + E V E G
Sbjct: 536 VLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKLAGAHDFISELPQGYNTE-VGEKGAN 593
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635
LSGG ++++++ AL+G+ +++I DE TS +D S L + +++I +GR
Sbjct: 594 ---------LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRT 644
Query: 636 ILLTTHSMDEAEELGDRIAIMANG 659
+++ H + DRI ++ G
Sbjct: 645 VIIIAHRLSTVRA-CDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLS----MISGEEYPTDGTAFIFGKDI 1424
R + + +++FS++ GE G +G G+GK++ L ++ + G+ I G DI
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE----LSSGSILIDGVDI 68
Query: 1425 RS-DPKAARRLIGYCPQFDALLEYLTVQEHL---------ELYARIKGVAEYRMDDVVME 1474
R I PQ D +L T++ +L EL+ ++ V + + V
Sbjct: 69 SKIGLHDLRSRISIIPQ-DPVLFSGTIRSNLDPFGEYSDEELWQALERVG---LKEFVES 124
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
D + LS G ++ L +A A++ I++LDE + +DP + + I
Sbjct: 125 LPGGLD-TVVEEGGEN-LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 61/209 (29%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
L + K Y G + ++ +H + AG+ +G +G GK+T L +++G E P+ G
Sbjct: 15 LNAVSKRY-GERTVLNQLDLH-----IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG- 67
Query: 1417 AFIFGKDIRSDPKAARRLIGYCPQF-DA-LLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
+ G ++ + RL+ F DA LL + V +++ L +KG ++R D ++
Sbjct: 68 ELLAGTAPLAEAREDTRLM-----FQDARLLPWKKVIDNVGL--GLKG--QWR--DAALQ 116
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L L A + LSGG K+++++A A+I P +++LDEP +D + + M ++I
Sbjct: 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
L + G T V+L TH ++EA A+ R+
Sbjct: 177 ESLWQQHGFT-VLLVTHDVSEAVAMADRV 204
|
Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 57/232 (24%), Positives = 116/232 (50%), Gaps = 25/232 (10%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ + LHK Y G + + L +++++G +G+GKST + + L P+ G
Sbjct: 6 LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS 61
Query: 510 ALVFGKNITADMDE--------------IRKGLGVCPQYDILFPELTVREHLEMFA---V 552
+V G+ I D+ +R L + Q+ L+ +TV E++ M A V
Sbjct: 62 IVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQV 120
Query: 553 LKGVKEELLESVVAEMVDEVGLADKVNIVVRA-LSGGMKRKLSLGIALIGDSKVVILDEP 611
L K+E E V + + +VG+ ++ LSGG ++++S+ AL + +V++ DEP
Sbjct: 121 LGLSKQEARERAV-KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179
Query: 612 TSGMDPYSMRLTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLK 662
TS +DP + ++++++ ++G+ +++ TH M A + + + G ++
Sbjct: 180 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231
|
Length = 257 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 41/227 (18%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-- 1408
N II L+N+ Y AV ++ + G+ +G +G GK+T L ++
Sbjct: 10 KNIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63
Query: 1409 ---EEYPTDGTAFIFGKDI---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYA 1458
E G G D+ R DP RR IG Q F ++ E++ A
Sbjct: 64 DLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-----SIYENIAFGA 118
Query: 1459 RIKGVAEYRMDDVVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGD 1509
RI G Y D M++LVE L K A + ++LSGG +++L +A + +
Sbjct: 119 RING---YTGD---MDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172
Query: 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
P ++++DEP + +DPI+ + E + L +++ TH+M +A
Sbjct: 173 PEVILMDEPCSALDPISTLKIEETMHELKKN---FTIVIVTHNMQQA 216
|
Length = 269 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 57/310 (18%)
Query: 1305 TRHRLCNTPS-SYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKV 1363
L + P+ Y + LL S D + L E + ++ + L+
Sbjct: 240 RAATLFSAPTHPYTQKLLNSEPSGDPVPLPEP---------------ASPLLDVEQLQVA 284
Query: 1364 YPGGK-----RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTT----LSMISGEEYPTD 1414
+P K D V V +++F+++ GE G +G +G+GK+TT L +I+ +
Sbjct: 285 FPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ----- 339
Query: 1415 GTAFIFGKDIRS-DPKA---ARRLIGYCPQ--FDALLEYLTVQ----EHLELYARIKGVA 1464
G + G+ + + + + R I Q +L L V E L ++ A
Sbjct: 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 1465 EYRMDDV--VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
+ R V VME+ V D + P+ SGG ++++++A A+I P ++ILDEP++ +
Sbjct: 400 Q-REQQVIAVMEE-VGLDPETRHRYPA-EFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
Query: 1523 DPIAKRFMWEVISRLSTRQGK--TAVILTTHSMNEAQALCTRIGIMVGGQL-------RC 1573
D K ++++ L + Q K A + +H ++ +ALC ++ ++ G++ R
Sbjct: 457 D---KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
Query: 1574 IGSPQHLKTR 1583
+PQ TR
Sbjct: 514 FAAPQQEYTR 523
|
Length = 529 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 37/214 (17%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD-------EI 524
+ LTL I A+ G +GAGK++ I+ + GL P G +V + D + E
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR-IVLNGRVLFDAEKGICLPPEK 75
Query: 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR- 583
R+ +G Q LFP VR +L G+ +S+VA+ V L ++ R
Sbjct: 76 RR-IGYVFQDARLFPHYKVRGNL-----RYGMA----KSMVAQFDKIVALLGIEPLLDRY 125
Query: 584 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD--------PYSMRLTWQLIKKIKKG 633
+LSGG K+++++G AL+ +++++DEP + +D PY RL ++I
Sbjct: 126 PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA----REIN-- 179
Query: 634 RI-ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
I IL +HS+DE L DR+ ++ G +K G
Sbjct: 180 -IPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-10
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 22/174 (12%)
Query: 1392 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKAAR---RLIGYCPQFDALLE 1446
+G +GAGKTT + +++G + T G +I G DIR PK R+ GYC Q D
Sbjct: 912 MGVSGAGKTTLMDVLAGRK--TGG--YIEG-DIRISGFPKKQETFARISGYCEQNDIHSP 966
Query: 1447 YLTVQEHLELYARI---KGVAEY---RMDDVVMEKLVEFDLLKHA--KKPSFT-LSGGNK 1497
+TV+E L A + K V++ D VME LVE D LK A P T LS +
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVME-LVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
++L++A+ ++ +P I+ +DEP++G+D A + + R + G+T V+ T H
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRT-VVCTIH 1077
|
Length = 1470 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--GEEYPT---DGTAFIFGKDIRSDPK 1429
A+ ++ ++ F+G +G GK+T L + + + P +G I G++I
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1430 AARRL---IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA- 1485
L +G Q ++ E++ R+ GV D+ + + VE + LK A
Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVK----DNAFIRQRVE-ETLKGAA 131
Query: 1486 ---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1536
K+ +F LSGG +++L +A AM P ++++DEP++ +DPI+ + E+I
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
L + +++ TH+M +A + + G++
Sbjct: 192 L---KKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 3e-10
Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 1449 TVQEHLELYARIKGVA-----EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1503
++ E++ RI+GV E R+++ + + ++ +F LSGG +++L +A
Sbjct: 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173
Query: 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
A+ DP I++ DEP++ +DPIA + E+IS L + K +++ TH+M +A +
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDL---KNKVTILIVTHNMQQAARVSDYT 230
Query: 1564 GIMVGGQL 1571
M G+L
Sbjct: 231 AYMYMGEL 238
|
Length = 265 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 457 KVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN 516
V T R A+ T+ I AL+G NG+GKST L+G + +G + G+
Sbjct: 11 DVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP 70
Query: 517 ITADMDEIRKGL-GVCPQ---YDILFPELTVREHLEM-----FAVLKGVKEELLESVVAE 567
++K L PQ D FP L V + + M L+ K+ + V A
Sbjct: 71 TR---QALQKNLVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAA 126
Query: 568 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 627
+ V + + + + LSGG K+++ L A+ +V++LDEP +G+D + L+
Sbjct: 127 LA-RVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185
Query: 628 KKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665
++++ +G+ +L++TH++ E D +M G++ G
Sbjct: 186 RELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 3e-10
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 41/220 (18%)
Query: 1366 GGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR 1425
+ + + V GE +G G+GK++ LS + GE G+ + G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--- 67
Query: 1426 SDPKAARRLIGYCPQFDALLEYLTVQE----HLELYARIKGVAEYRMDDVV--------M 1473
I Y Q ++ T++E E R + V+ +
Sbjct: 68 ---------IAYVSQE-PWIQNGTIRENILFGKPFD-------EERYEKVIKACALEPDL 110
Query: 1474 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWE 1532
E L + DL + +K LSGG K+++S+A A+ D I +LD+P + +D + +
Sbjct: 111 EILPDGDLTEIGEK-GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQAL--CTRIGIMVGGQ 1570
I L KT IL TH + Q L +I ++ G+
Sbjct: 170 CILGL-LLNNKT-RILVTHQL---QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 58/211 (27%), Positives = 109/211 (51%), Gaps = 31/211 (14%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ ++ L Y T+ GN N + ++ Q + LLG G+GKST +S + L+ T GD
Sbjct: 3 MTVKDLTAKY-TEGGNAVLEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 510 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ G + + + + RK GV PQ +F T R++L+ + K EE+ + +
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG--KWSDEEIWK-----V 111
Query: 569 VDEVGL-------ADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+EVGL +++ V+ LS G K+ + L +++ +K+++LDEP++ +DP
Sbjct: 112 AEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 171
Query: 618 YSMRLTWQLIKKIKK----GRIILLTTHSMD 644
+T+Q+I+K K ++L+ H ++
Sbjct: 172 ----ITYQVIRKTLKQAFADCTVILSEHRIE 198
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-10
Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 1370 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DP 1428
+++ V ++F +AG+ +G GAGKTT ++++ PT G I G DI +
Sbjct: 345 ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHL----------ELYARIKGVAEYRMDDVVMEKLVE 1478
++ R+ I Q DA L +++E++ E+Y K A + D ++++
Sbjct: 405 ESLRKSIATVFQ-DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH---DFILKRSNG 460
Query: 1479 FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+D L + LSGG +++L++A A++ + PI++LDE ++ +D
Sbjct: 461 YDTLVGERGNR--LSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 77/241 (31%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+ I L N G + + +H+L++ V GE + +G NGAGK+T LS+I+G+
Sbjct: 257 NEPRIVLNN------GVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310
Query: 1411 ---YPTDGTAFIFGK---------DIRSDPKAARRLIGYCPQ------------------ 1440
Y D T +FG+ DI+ + IGY
Sbjct: 311 PQGYSNDLT--LFGRRRGSGETIWDIK-------KHIGYVSSSLHLDYRVSTSVRNVILS 361
Query: 1441 --FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSG 1494
FD++ Y V + + A + L D+L + A P +LS
Sbjct: 362 GFFDSIGIYQAVSDRQQKLA--------------QQWL---DILGIDKRTADAPFHSLSW 404
Query: 1495 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPI----AKRFMWEVISRLSTRQGKTAVILTT 1550
G +R + A++ P ++ILDEP G+DP+ +RF+ +IS +G+T ++ +
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLIS-----EGETQLLFVS 459
Query: 1551 H 1551
H
Sbjct: 460 H 460
|
Length = 490 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-10
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIRKGLGVCPQ---Y 534
+I+ L G GAG+S + +L G T G + GK I D IR G+ +CP+
Sbjct: 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKA 339
Query: 535 DILFPELTVRE---------HLEMFAVLKGVKE-ELLESVVAEMVDEVGLADKVNI---- 580
+ + P +V + HL ++ E E + + + NI
Sbjct: 340 EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL----------NIKTPS 389
Query: 581 ---VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRII 636
++ LSGG ++K LG L D KV++LDEPT G+D + + +I ++ +G +
Sbjct: 390 REQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449
Query: 637 LLTTHSMDEAEELG--DRIAIMANG 659
L S D E LG DRI +M G
Sbjct: 450 LFV--SSDLPEVLGVADRIVVMREG 472
|
Length = 501 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-10
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 26/211 (12%)
Query: 1324 SSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSV 1383
+ ESD D+N++ D++ E I + RNL Y + + +V ++++ V
Sbjct: 739 TDESD--DVNDEKDMEKESGE--------DIFHWRNL--TYEVKIKKEKRVILNNVDGWV 786
Query: 1384 QAGECFGFLGTNGAGKTTTLSMISGEE---YPTDGTAFIFGKDIRSDPKAARRLIGYCPQ 1440
+ G +G +GAGKTT L++++ T G + G+ + S + +R IGY Q
Sbjct: 787 KPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQRSIGYVQQ 843
Query: 1441 FDALLEYLTVQEHLELYARI---KGVAEYRMDDVVME--KLVEFDLLKHA--KKPSFTLS 1493
D L TV+E L A + K V++ + V E KL+E + A P L+
Sbjct: 844 QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903
Query: 1494 GGNKRKLSVAIAMIGDPP-IVILDEPSTGMD 1523
+++L++ + ++ P ++ LDEP++G+D
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-10
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-TGDALVFGK--NITADMDEIR 525
V+ + +L +IL + G GAG++ + L G P G+ + GK +I IR
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335
Query: 526 KGLGVCPQ---YDILFPELTVREH-----LEMFAVLKGVKEELLESVVAEMVDEVGL-AD 576
G+ + P+ + P L V ++ L+ F + ++ + + +
Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA 395
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRI 635
+ + LSGG ++K L L+ + +V+ILDEPT G+D + ++LI ++ ++G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVA 455
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLK 662
I++ + + E L DR+ ++ G LK
Sbjct: 456 IIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 4e-10
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
+ ++F + AG G+NGAGKTT L +I+G P G + I+ D ++ +
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLVEFDLLKHAKKPSFT 1491
+ + YLT++E+ LY + ++ +E L+++ P
Sbjct: 77 CFVGHRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFSLEHLIDY--------PCGL 127
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK-TAVILTT 1550
LS G KR++++ + + +LDEP +D + + +I+++ + K AV+LT+
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTIITKIQEHRAKGGAVLLTS 184
Query: 1551 H---SMNEA 1556
H +N+A
Sbjct: 185 HQDLPLNKA 193
|
Length = 200 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-10
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--- 1413
++ + K + G K A+ + V+ GEC G G NGAGK+T + ++SG YP
Sbjct: 4 MKGIVKTFGGVK------ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTW 56
Query: 1414 DGTAFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI--KGVAEYRMD 1469
DG + G + + R I Q L+ L+V E++ L I G RM
Sbjct: 57 DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG---GRMA 113
Query: 1470 DVVMEKLVEFDLLKHAK-------KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
M + +LL+ + +P GG ++ + +A A+ ++ILDEPS+ +
Sbjct: 114 YNAMYLRAK-NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+ ++I L + A + +H +NE +A+C I ++ GQ
Sbjct: 173 TEKETEILLDIIRDL--KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 6e-10
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEI 524
+ L L++ + +I A++G NG+GKST ++ G P GD L G++I E
Sbjct: 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKGESILDLEPEE 80
Query: 525 RKGLGV--CPQYDILFPELTVREHLEMFAVLKGVKEELLE-------SVVAEMVDEVGLA 575
R LG+ QY I P ++ + L + K + L E ++ E + VG+
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD 140
Query: 576 DK-----VNIVVRALSGG-MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
VN SGG KR L +AL+ DS++ ILDE SG+D ++++ + I K
Sbjct: 141 PSFLSRNVN---EGFSGGEKKRNEILQMALL-DSELAILDETDSGLDIDALKIIAEGINK 196
Query: 630 IK-KGRIILLTTH 641
+ I+L TH
Sbjct: 197 LMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-10
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 60/201 (29%)
Query: 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-----------------------AL 511
E ++ +LG NG GK+T + +L G + P GD
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154
Query: 512 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE 571
++ I + K PQY L P+ V KG ELL+ V DE
Sbjct: 155 LYNGEIKV----VHK-----PQYVDLIPK-----------VFKGKVRELLKKV-----DE 189
Query: 572 VGLADKV-------NIV---VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
G D+V NI+ + LSGG +++++ AL+ D+ DEPTS +D R
Sbjct: 190 RGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ-R 248
Query: 622 LTW-QLIKKIKKGRIILLTTH 641
L +LI+++ +G+ +L+ H
Sbjct: 249 LNVARLIRELAEGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 7e-10
Identities = 64/238 (26%), Positives = 107/238 (44%), Gaps = 39/238 (16%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM-------ISGEEYPTDGTAFIFGKDI 1424
K + ++ A +G G+GKTT L +SG Y G + G+ I
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY--SGDVLLGGRSI 90
Query: 1425 RS--DPKAARRLIGYCPQ---------FDALLEYLTVQEHLELYAR--IKGVAEYRMDDV 1471
+ D RR +G Q D +L V+ H +L R +GVA+ R+ +V
Sbjct: 91 FNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA--GVRAH-KLVPRKEFRGVAQARLTEV 147
Query: 1472 VMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
+ V+ D L + F LSGG ++ L +A + +P +++LDEP++ +DP +
Sbjct: 148 GLWDAVK-DRLSDS---PFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-------RCIGSPQHLKT 1582
E I L+ R VI+ TH++ +A + R + G+L + SP+H +T
Sbjct: 204 EFIRSLADR---LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258
|
Length = 276 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 48/202 (23%)
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 538
+++A++G G+GKS+ +S L+G + +G V G + Q +
Sbjct: 31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPWIQ 78
Query: 539 PELTVRE----HLEMFAVLKGVKEELLESVV---------AEMVD----EVGLADK-VNI 580
T+RE EE E V+ + D E+G +K +N
Sbjct: 79 NG-TIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIG--EKGIN- 127
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ--LIKKIKKGRIILL 638
LSGG K+++SL A+ D+ + +LD+P S +D + R ++ ++ + + +L
Sbjct: 128 ----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL 183
Query: 639 TTHSMDEAEELGDRIAIMANGS 660
TH + D+I ++ NG
Sbjct: 184 VTHQLQLLPHA-DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYPTDGTAFIF-GKDIRSDPKAARRLIG 1436
L V+ GE +G NG+GK+T + ++G E+Y G F GKD+ R G
Sbjct: 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79
Query: 1437 YCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEKL----VEFDLLK 1483
F +E V L + V YR D++ EK+ + DLL
Sbjct: 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT 139
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+ F SGG K++ + + +P + ILDE +G+D A + + + ++ L R GK
Sbjct: 140 RSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL--RDGK 195
Query: 1544 TAVILTTH 1551
+ I+ TH
Sbjct: 196 RSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 8e-10
Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 35/243 (14%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDIR 1425
K A++ + + + +G +G GK+T L +IS + +G + GK+I
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK--IEGEVLLDGKNIY 74
Query: 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
D R+ +G Q +++ +++ RI G+ D ++K+VE+ L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIK----DKKELDKIVEWALK 129
Query: 1483 KHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
K A KK + LSGG +++L +A + P ++++DEP++ +DPI+ + ++
Sbjct: 130 KAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1593
+ L + +++ TH+M +A + + G L + + FLE + K
Sbjct: 190 MVELKK---EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI------FLEPQKK 240
Query: 1594 PTE 1596
TE
Sbjct: 241 ETE 243
|
Length = 251 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-10
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRK 526
V + Q +A++G GAGKST I++L + P +G L+ G +I T +R+
Sbjct: 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409
Query: 527 GLGVCPQYDILFPELTVREHLEMFAVLK--GVKEELLE-SVVAEMVDEV-GLADKVNIVV 582
+ V Q LF ++ +++ V + EE+ + A+ D + D + VV
Sbjct: 410 NIAVVFQDAGLFNR-SIEDNIR---VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465
Query: 583 ----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILL 638
R LSGG +++L++ AL+ D ++ILDE TS +D + + ++ KGR +
Sbjct: 466 GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525
Query: 639 TTHSMDEAEELGDRIAIMANGSL 661
H + DRI + NG +
Sbjct: 526 IAHRLSTVRN-ADRILVFDNGRV 547
|
Length = 588 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDIL 537
+ + ++G GAGKST I L + G + G +I T ++++R L + PQ L
Sbjct: 34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTL 93
Query: 538 FPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 597
F T+R +L+ F + EE+ ++ V E GL LS G ++ L L
Sbjct: 94 FSG-TIRSNLDPFD--EYSDEEIYGAL---RVSEGGLN---------LSQGQRQLLCLAR 138
Query: 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA 657
AL+ +V++LDE T+ +D + L + I++ IL H + + D+I +M
Sbjct: 139 ALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY-DKILVMD 197
Query: 658 NGSLK 662
G +K
Sbjct: 198 AGEVK 202
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 9e-10
Identities = 46/203 (22%), Positives = 95/203 (46%), Gaps = 33/203 (16%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRS--- 1426
A+ + ++ + +G +G GK+T L ++ +G + G+DI
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1427 DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
D R+ +G Q F +++ +++ R G+ D ++++VE L
Sbjct: 78 DVNQLRKRVGMVFQQPNPFP-----MSIYDNVAYGPRTHGIK----DKKKLDEIVEKSLK 128
Query: 1483 KHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
A KK + LSGG +++L +A A+ +P ++++DEP++ +DPI+ + E+
Sbjct: 129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 1534 ISRLSTRQGKTAVILTTHSMNEA 1556
I L + +++ TH+M +A
Sbjct: 189 IQEL---KKDYTIVIVTHNMQQA 208
|
Length = 250 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 47/227 (20%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
I+ +N+ YP R D V + ++F++ GE +G +G+GK+T ++++ P
Sbjct: 11 IVKFQNVTFAYP--TRPDTLV-LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1414 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL-----TVQEHLELYAR-IKGVAEYR 1467
G + GK I Q++ +YL V + L+AR ++ Y
Sbjct: 68 GGQVLLDGKPI--------------SQYEH--KYLHSKVSLVGQEPVLFARSLQDNIAYG 111
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFT-----------------LSGGNKRKLSVAIAMIGDP 1510
+ E + E HA SF LSGG K+++++A A+I +P
Sbjct: 112 LQSCSFECVKEAAQKAHAH--SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169
Query: 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
++ILDE ++ +D +++ + + + R+ V++ H ++ +
Sbjct: 170 QVLILDEATSALDAESEQQVQQALYDWPERR---TVLVIAHRLSTVE 213
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 29/231 (12%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDI 1424
A+H ++ + + +G +G GK+T L +I G +G + G++I
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR--VEGEILLDGENI 75
Query: 1425 ---RSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKL 1476
D RR +G Q F ++ E++ R+ GV + + + V L
Sbjct: 76 YDPHVDVVELRRRVGMVFQKPNPFPK-----SIFENVAYGLRVNGVKDKAYLAERVERSL 130
Query: 1477 VEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
L K + + LSGG +++L +A A+ +P ++++DEP++ +DPIA + + E
Sbjct: 131 RHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE 190
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+I L R +I+ TH+M +A + G+L +G + + TR
Sbjct: 191 LIHELKARY---TIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 26/241 (10%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDIRS- 1426
K A+ +++ + +G +G GK+T + ++ + +G I G+DI
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH 1484
D R+ +G Q +++ +++ RI G + +D VV L L
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143
Query: 1485 A----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1540
K P+ +LSGG +++L +A + P I++ DEP++ +DPI+ + ++I L
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--- 200
Query: 1541 QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 1600
+ +++ TH+M +A + G + G+L FG ++ P E S+
Sbjct: 201 KKDYTIVIVTHNMQQAARISDYTGFFLMGEL----------IEFGQTRQIFHNPREKSTE 250
Query: 1601 D 1601
D
Sbjct: 251 D 251
|
Length = 258 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 54/242 (22%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKD 1423
+K + + + E F+G +G GK+T L + + G I G D
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK--VKGELDIDGID 73
Query: 1424 IRSD---------------------PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG 1462
+ S PK+ + Y P+ L A+ K
Sbjct: 74 VYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGL-------------AKNK- 119
Query: 1463 VAEYRMDDVVMEKLVEF----DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1518
++D++V + L +L K +F LSGG +++L +A A+ P ++++DEP
Sbjct: 120 ---KKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176
Query: 1519 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+ +DP+A + +I L +I+ THSM +A+ + R+ G++ + Q
Sbjct: 177 CSALDPVATNVIENLIQELKKN---FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQ 233
Query: 1579 HL 1580
+
Sbjct: 234 EI 235
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 39/207 (18%), Positives = 78/207 (37%), Gaps = 26/207 (12%)
Query: 1367 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG---EEYPTDGTAFIFGKD 1423
GK + + V+ GE LG G+G +T L ++ +G G
Sbjct: 14 GKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
+ + I Y + D LTV+E L+ R KG ++ V
Sbjct: 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG------NEFVR---------- 117
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+SGG ++++S+A A++ ++ D + G+D + + I ++
Sbjct: 118 -------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQ 1570
T + + +E L ++ ++ G+
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-09
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Query: 483 ALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 540
AL+G +GAGK+T + +L G GD + G + + G C Q DI P+
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--FPKKQETFARISGYCEQNDIHSPQ 967
Query: 541 LTVREHLEMFAVL---KGV-KEELLESV--VAEMVDEVGLADKVNIV----VRALSGGMK 590
+TVRE L A L K V KEE + V V E+V+ L D IV V LS +
Sbjct: 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDA--IVGLPGVTGLSTEQR 1025
Query: 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK-IKKGRIILLTTH--SMDEAE 647
++L++ + L+ + ++ +DEPTSG+D + + + ++ + GR ++ T H S+D E
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 648 ELGDRIAIMANG 659
D + +M G
Sbjct: 1086 AF-DELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1438
+ ++ GE G+ G+GKT+ L +I GE P++G G+ I +
Sbjct: 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ISFS 103
Query: 1439 PQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS------- 1489
QF ++ T++E++ I GV+ EYR VV +E D+ K +K +
Sbjct: 104 SQFSWIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P +D ++ ++E
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-09
Identities = 62/263 (23%), Positives = 122/263 (46%), Gaps = 53/263 (20%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL--IPPTT 507
I+++ L K + K + ++ T+ E ++L +LG +GAGKS + +L G+ PT+
Sbjct: 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS 56
Query: 508 GDAL-----------------------VFGKNITA------DMDE-----IRKGLGVCPQ 533
G + V G + ++ + IRK + + Q
Sbjct: 57 GRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ 116
Query: 534 YDI-LFPELTVREHLEMFAVLKGVKE---ELLESV--VAEMVDEVGLADKVNIVVRALSG 587
L+ + TV ++ VL+ ++E E E+V ++++ V L+ ++ + R LSG
Sbjct: 117 RTFALYGDDTVLDN-----VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK--IKKGRIILLTTHSMDE 645
G K+++ L L + + + DEPT +DP + +L +++ G ++LT+H +
Sbjct: 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
Query: 646 AEELGDRIAIMANGSLKCCGSSL 668
E+L D+ + NG +K G+
Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 35/145 (24%), Positives = 75/145 (51%), Gaps = 21/145 (14%)
Query: 1459 RIKGV-AEYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIV 1513
RI G + ++ ++V + L + L K + +LSGG +++L +A A+ +P ++
Sbjct: 118 RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL-- 1571
++DEP++ +DP++ R + E+I +L + K +++ TH+M +A + + G+L
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKL---KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234
Query: 1572 -----RCIGSPQHLKT------RFG 1585
+ +P +T +FG
Sbjct: 235 CNDTNKMFSNPDDQRTLDYITGKFG 259
|
Length = 259 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 17/210 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-----EEYPTDGTAFIFGKDI---RS 1426
A+H ++ + E +G +G GK+T L ++ E G G++I +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM-DDVVMEKLVEFDLLKHA 1485
D R+ +G Q + +V +++ +I GV + + D V E L + + K
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET 137
Query: 1486 K----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
K + + SGG ++++ +A A+ P +V+LDEP++ +DPI+ + E + L +
Sbjct: 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL---K 194
Query: 1542 GKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ I+ TH++ +A + + ++ G L
Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224
|
Length = 251 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 36/221 (16%)
Query: 1353 AIIYLRNLRKVYPGGK---RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1409
++ +RNL K + R AV ++F+++ G+ +G NG+GK+T M++G
Sbjct: 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 1410 EYPTDGTAFIFG------------KDIR---SDPKAA---RRLIGYCPQFDALLEYLTVQ 1451
PT G I K IR DP + R IG L L +
Sbjct: 63 IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG-----QILDFPLRLN 117
Query: 1452 EHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510
LE R K + E L LL HA L+ G K+++++A A+I P
Sbjct: 118 TDLEPEQRRKQ---------IFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRP 168
Query: 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
I+I DE +D + + ++ L +QG + + +T H
Sbjct: 169 KIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
|
Length = 267 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 56/216 (25%), Positives = 112/216 (51%), Gaps = 12/216 (5%)
Query: 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
++++ + K Y G + + L + + + + L+G +G GKST + M+ GL T+G
Sbjct: 3 GLKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
Query: 509 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ + G+ + +++ + + + Q L+P ++VRE++ ++G+ + +E VAE
Sbjct: 60 EIWIGGRVVN-ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP---YSMRLTWQ 625
+ L ++ R LSGG ++++++G A++ + V + DEP S +D MRL
Sbjct: 119 ARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE-- 176
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
I+++ + L TH EA L DR+ +M G
Sbjct: 177 -IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211
|
Length = 356 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-09
Identities = 43/182 (23%), Positives = 94/182 (51%), Gaps = 19/182 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
A+N++ + E +I+ ++G NG+GKST +++ G+ P G + G +A + I G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG---SAALIAISSG 95
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
L +LT E++E+ ++ G+ +E ++ ++ E+++ + + V+ S
Sbjct: 96 LN---------GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS 146
Query: 588 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI----KKGRIILLTTHSM 643
GMK +L I++ + ++++DE S D T + + K+ ++G+ I +HS+
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKTIFFISHSL 203
Query: 644 DE 645
+
Sbjct: 204 SQ 205
|
Length = 549 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 25/226 (11%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--- 1413
++N+ K + G K A+ +++ V+AGE G NGAGK+T + ++SG YP
Sbjct: 8 MKNITKTFGGVK------ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTY 60
Query: 1414 DGTAFIFGKDIR----SDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
+G G++++ D + A I + Q AL++ L+V E++ L I MD
Sbjct: 61 EGEIIFEGEELQASNIRDTERAGIAIIH--QELALVKELSVLENIFLGNEI--TPGGIMD 116
Query: 1470 DVVM-----EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
M + L + L + P L G ++ + +A A+ ++ILDEP+ +
Sbjct: 117 YDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+ ++I L + A I +H +NE +A+ I ++ G+
Sbjct: 177 SETAVLLDIIRDL--KAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 32/232 (13%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+Q+ L K Y +G C V+ LY ++L ++G +G+GKST + L G + P G
Sbjct: 4 LQVSGLSKSYGGGKG-CRDVS---FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 510 ALVFGKN-----ITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG--VKEELLE 562
A ++ + + R+ L + + F R+ L M V G + E L+
Sbjct: 60 ATYIMRSGAELELYQLSEAERRRLM---RTEWGFVHQNPRDGLRM-RVSAGANIGERLMA 115
Query: 563 -------SVVAEMVD---EVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEP 611
++ A D EV + +++ + RA SGGM+++L + L+ ++V +DEP
Sbjct: 116 IGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175
Query: 612 TSGMD----PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
T G+D + L L++ + II+ TH + A L R+ +M G
Sbjct: 176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIV--THDLGVARLLAQRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT-TLSMISGEEYPTDGTAFIFGKDIRSD 1427
D + +++F V+AGE G +G GAGK+T L++ E +G I G DI +
Sbjct: 17 APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTI 75
Query: 1428 P-KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1486
P + R + PQ D L T++ +L+ + EY D+ + L
Sbjct: 76 PLEDLRSSLTIIPQ-DPTLFSGTIRSNLDPF------DEYS-DEEIYGAL-------RVS 120
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
+ LS G ++ L +A A++ P +++LDE + +D + + I T + +
Sbjct: 121 EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT---NSTI 177
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
+ H + +I +M G+++ P
Sbjct: 178 LTIAHRLRTI-IDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-09
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435
++ +TFS+ G +G G GK++ LS + E +G + G +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS------------V 701
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF----- 1490
Y PQ A ++ +++E++ L+ + Y+ L + ++L +
Sbjct: 702 AYVPQ-QAWIQNDSLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV 759
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKTAVILT 1549
LSGG K+++S+A A+ + I + D+P + +D + K VI + KT IL
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR-ILV 818
Query: 1550 THSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
TH ++ + I +M GG++ +GS Q L R G F E
Sbjct: 819 THGISYLPQVDVII-VMSGGKISEMGSYQELLQRDGAFAEF 858
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 44/176 (25%)
Query: 469 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVG-LIP-------PTTGDALV---- 512
VN +L T +++ +LG NG GKST + +L G L P P + D ++
Sbjct: 86 VNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFR 145
Query: 513 -------FGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV- 564
F K ++ + K PQY L P V+KG ELL+ V
Sbjct: 146 GTELQNYFKKLYEGELRAVHK-----PQYVDLIP-----------KVVKGKVGELLKKVD 189
Query: 565 ----VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+V+ +GL + ++ V LSGG +++++ AL+ D+ V DEP+S +D
Sbjct: 190 ERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
|
Length = 591 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 43/205 (20%)
Query: 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTG--------DALV-----------FGKNIT 518
E Q+L L+G NG GKST + +L G + P G D ++ F K +
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 519 ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-----VAEMVDEVG 573
D+ I K PQY L P +KG ELL+ + E+VD++
Sbjct: 85 GDVKVIVK-----PQYVDLIP-----------KAVKGKVGELLKKKDERGKLDELVDQLE 128
Query: 574 LADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW-QLIKK-IK 631
L ++ + LSGG +++++ AL D+ DEP+S +D RL +LI++ +
Sbjct: 129 LRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ-RLNAARLIRELAE 187
Query: 632 KGRIILLTTHSMDEAEELGDRIAIM 656
+L+ H + + L D I +
Sbjct: 188 DDNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 471 SLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLG 529
S ++ E IL L+G NGAGKST ++ + G+ +G G+ + A E+ +
Sbjct: 19 SGEVRAGE--ILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75
Query: 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGM 589
Q + V +L + K E L ++ + L DK+ LSGG
Sbjct: 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELL-----NDVAGALALDDKLGRSTNQLSGGE 130
Query: 590 KRKLSLGIALIG-------DSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLTTH 641
+++ L ++ ++++LDEP + +D +L+ + ++G I++++H
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190
Query: 642 SMDEAEELGDRIAIMANGSLKCCGS 666
++ R ++ G L G
Sbjct: 191 DLNHTLRHAHRAWLLKRGKLLASGR 215
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIR 525
A++ L +Y +++AL+G NGAGKST + +L G+ G L GK +T +
Sbjct: 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE 78
Query: 526 KGLGVCPQYDILFPELTVREHL----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 581
G+G+ Q L P+LT+ E++ E + + + + +++ + L + +
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL 138
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK----KGRIIL 637
V LS G ++ + + L +SKV+I+DEPT D + T L + I+ +GR I+
Sbjct: 139 VGELSIGEQQMVEIAKVLSFESKVIIMDEPT---DALTDTETESLFRVIRELKSQGRGIV 195
Query: 638 LTTHSMDEAEELGDRIAIMANG 659
+H + E E+ D + + +G
Sbjct: 196 YISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE-YP-TDGTAFIFGKDIRSDP--KAARR 1433
+ +V+ GE +G NG+GK+T I+G Y T GT G+D+ + AR
Sbjct: 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77
Query: 1434 LIGYCPQFDALLEYLTVQEHLE--LYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1491
+ Q+ + ++ E L L AR E +D + KL++ L
Sbjct: 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK-AKLALLGMDEEF 136
Query: 1492 L--------SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
L SGG K++ + + +P + ILDE +G+D A + + E I+RL R+
Sbjct: 137 LNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL--REPD 194
Query: 1544 TAVILTTH 1551
+ ++ TH
Sbjct: 195 RSFLIITH 202
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 39/254 (15%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I N+R Y D+ + +L ++ GE G +G +G+GK+T ++ P
Sbjct: 456 ITFENIRFRY----APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 1415 GTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1462
G + G D+ +DP RR +G Q + L EH+ A++ G
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAG 571
Query: 1463 VAEYRM------DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILD 1516
++ + V EK LSGG ++++++A A++G+P I+I D
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-------------NLSGGQRQRIAIARALVGNPRILIFD 618
Query: 1517 EPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
E ++ +D ++ + + + +G+T VI+ H ++ +A C RI ++ GQ+ G
Sbjct: 619 EATSALDYESEALIMRNMREIC--RGRT-VIIIAHRLSTVRA-CDRIIVLEKGQIAESGR 674
Query: 1577 PQHLKTRFGNFLEL 1590
+ L G + L
Sbjct: 675 HEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 31/191 (16%)
Query: 1364 YPGGKRS--DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1421
YP K++ D K+ V GE G LG NG GKTT + +++G P +G+
Sbjct: 345 YPDLKKTYGDFKLEVEEGEIYD--GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----E 398
Query: 1422 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLV 1477
+D++ + Y PQ+ + TV++ L R + Y ++V +E L+
Sbjct: 399 EDLK---------VSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL 449
Query: 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM-WEVISR 1536
E +P LSGG +++++A A+ + + +LDEPS +D + +R + +VI R
Sbjct: 450 E--------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD-VEQRIIVAKVIRR 500
Query: 1537 LSTRQGKTAVI 1547
KTA++
Sbjct: 501 FIENNEKTALV 511
|
Length = 591 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 4e-09
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 27/238 (11%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS-----GEEYPTDGTAFIFGKDI- 1424
D + + ++ + + +G +G GK+T L ++ E +G F ++I
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77
Query: 1425 --RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDL 1481
R + RR + L ++V +++ +I G + +DD+V L + DL
Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL 136
Query: 1482 LKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
K K + LSGG +++L +A A+ P ++++DEP G+DPIA + +I L
Sbjct: 137 WDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSL 196
Query: 1538 STRQGKTAVILTTHSMNEAQALC----------TRIGIMV--GGQLRCIGSPQHLKTR 1583
R T VI+ +H++++ L RIG +V G + SP +TR
Sbjct: 197 RLRSELTMVIV-SHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRTR 253
|
Length = 261 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-09
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 51/188 (27%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
NA+ + NL K + D +L ++AGE +G NG GKTT L + GE
Sbjct: 318 NALE-VENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370
Query: 1412 PTDGTAFIFGKDIRSDPKAARRLIGYCPQ-----FD---ALLEYL---TVQEHLELYAR- 1459
P GT ++ A IGY Q F+ L +++ + E R
Sbjct: 371 PDSGT-------VKWSENAN---IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG 420
Query: 1460 IKGVAEYRM----DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVIL 1515
G R+ DD+ KK LSGG K ++ M+ P ++++
Sbjct: 421 TLG----RLLFSQDDI--------------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 1516 DEPSTGMD 1523
DEP+ MD
Sbjct: 463 DEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-09
Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 30/264 (11%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDE 523
AV + L+ + L+L+G +G+GKSTT L+ L+ G+ + G+ I +
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 524 IRKGLGVCPQ--YDILFPELTV----REHLEMFAVLKGVKEELLESVVAEMVDEVGL-AD 576
+R+ + Q Y L P TV E L + +L G + + VA +++ VGL +
Sbjct: 399 LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPG---KAAAARVAWLLERVGLLPE 455
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-----K 631
SGG ++++ + AL + KV+I DE S +D S+R Q+I +
Sbjct: 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD-VSIRG--QIINLLLDLQRD 512
Query: 632 KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG--SSLFLKHQYGVGYTLTLVKSAPDA 689
G L +H M E + R+A+M G + G ++F Q+ YT L+ + P
Sbjct: 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH--PYTRKLMAAVP-- 568
Query: 690 SAAADIVYRHIPSALCVSEVGTEI 713
AD + L ++ + I
Sbjct: 569 --VADPSRQRPQRVLLSDDLPSNI 590
|
Length = 623 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 27/247 (10%)
Query: 1343 NRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKV-AVHSLTFSVQAGECFGFLGTNGAGKTT 1401
L+ +A++ +++LR + D V AV+ L FS++AGE G +G +G+GK+
Sbjct: 1 TVPLAQQQADALLDVKDLRVTF---STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQ 57
Query: 1402 TLSMISG---EEYPTDGTAFIFGKDIRSDP-KAARRL----IGYCPQ--FDALLEYLTVQ 1451
T + G G+A G++I + P K +L I Q +L Y+ V
Sbjct: 58 TAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117
Query: 1452 EHL-ELYARIKGVAE-------YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1503
E L E+ KG+++ RM D V K+ E K K SGG ++++ +A
Sbjct: 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAV--KMPE--ARKRMKMYPHEFSGGMRQRVMIA 173
Query: 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI 1563
+A++ P ++I DEP+T +D + + +++ L R+ TA+I+ TH + +C ++
Sbjct: 174 MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK-REFNTAIIMITHDLGVVAGICDKV 232
Query: 1564 GIMVGGQ 1570
+M G+
Sbjct: 233 LVMYAGR 239
|
Length = 330 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 6e-09
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD 522
G +L + + + A++G NG GKST + L L+ P G + G++I
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77
Query: 523 EIRKGLGVCPQY-----DILFPELTVR---EHLEMFAVLKGVKEELLESVVAEMVDEVGL 574
E+ + +G+ Q DI EL R H +F + KE+ E V + + G+
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR--KED--EEAVTKAMQATGI 133
Query: 575 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+ V LSGG +++ + + L ++ +++LDEPT+ +D
Sbjct: 134 THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-09
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 23/202 (11%)
Query: 476 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT------------ADMDE 523
L++ +IL + G GA ++ + L G+ + G + GK I A + E
Sbjct: 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE 330
Query: 524 IRKGLGVCPQYDILFPEL--TVREHLEMFAVLKGVKEELLESVVAEMVDEVGL---ADKV 578
R+ G+ DI F L +R + +L + ++S ++D + + +
Sbjct: 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSR---MKSDTQWVIDSMRVKTPGHRT 387
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIIL 637
I +LSGG ++K+ +G L+ ++++LDEPT G+D + +QLI ++ KK + I+
Sbjct: 388 QI--GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
Query: 638 LTTHSMDEAEELGDRIAIMANG 659
+ + M E + DRI +M+NG
Sbjct: 446 IISSEMPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-09
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ RN+ YPG R A+ S++ ++ GE +G +G+GK+T +++I P
Sbjct: 331 VEFRNVTFRYPGRDRP----ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386
Query: 1415 GTAFIFGKDIRSDPKAA--RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G + G D+ D A RR + Q D +L T+ ++ Y R + ++ +
Sbjct: 387 GQILLDGHDLA-DYTLASLRRQVALVSQ-DVVLFNDTIANNIA-YGRTEQADRAEIERAL 443
Query: 1473 -MEKLVEF--DLLKHAKKP----SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
+F L P LSGG +++L++A A++ D PI+ILDE ++ +D
Sbjct: 444 AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503
Query: 1526 AKRFMWEVISRLSTRQGKTAVIL 1548
++R + + RL QG+T +++
Sbjct: 504 SERLVQAALERL--MQGRTTLVI 524
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 7e-09
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 1379 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYC 1438
++F ++ G+ G+ G+GK++ L MI GE P++G G+ I +
Sbjct: 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ISFS 492
Query: 1439 PQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS------- 1489
PQ ++ T+++++ I G++ EYR V+ +E D+ +K
Sbjct: 493 PQTSWIMPG-TIKDNI-----IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
TLSGG + ++S+A A+ D + +LD P T +D + ++ ++E
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-09
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 534
+Y+ +++ +LG NG GK+T + +L G+I P G +++ PQY
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYK---------PQY 409
Query: 535 DILFPELTVREHLEMFAVLKGVKEELLES-VVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
+ TV + L ++ S E+V + L D + V LSGG +++
Sbjct: 410 ISPDYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRV 464
Query: 594 SLGIALIGDSKVVILDEPTSGMD 616
++ AL ++ + +LDEP++ +D
Sbjct: 465 AIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 9e-09
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 25/173 (14%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGV 530
L ++ Q + LLG G+GKST +S L+ L+ T G+ + G + + + RK GV
Sbjct: 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGV 1296
Query: 531 CPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-------ADKVNIVVR 583
PQ +F T R++L+ + + EE+ + + +EVGL DK++ V+
Sbjct: 1297 IPQKVFIFSG-TFRKNLDPYE--QWSDEEIWK-----VAEEVGLKSVIEQFPDKLDFVLV 1348
Query: 584 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
LS G K+ + L +++ +K+++LDEP++ +DP +T Q+I+K K
Sbjct: 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP----VTLQIIRKTLK 1397
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 1386 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1445
GE LG +G+GK+T L+ ++G + T I + R K + G+ Q D L
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTKQILKRTGFVTQDDILY 152
Query: 1446 EYLTVQEHLELYARIKGVAEYRMDD--VVMEKLV-EFDLLKHAKK---PSFT--LSGGNK 1497
+LTV+E L + ++ + +V E ++ E L K SF +SGG +
Sbjct: 153 PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER 212
Query: 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
+++S+A M+ +P ++ILDEP++G+D A + + L+ ++GKT V
Sbjct: 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA-QKGKTIV 260
|
Length = 659 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 48/278 (17%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--- 506
+ IR L + T +G AV+ + +TL E +I L+G +G+GKS + G+
Sbjct: 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRV 63
Query: 507 TGDALVFGKNITADMD-------EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 559
T D + F D+D E RK +G +++ + +E + V +
Sbjct: 64 TADRMRFD-----DIDLLRLSPRERRKLVG----HNV---SMIFQEPQSCLDPSERVGRQ 111
Query: 560 LLESVVA-------------------EMVDEVGLADKVNIVVR---ALSGGMKRKLSLGI 597
L++++ A E++ VG+ D +I+ L+ G +K+ + I
Sbjct: 112 LIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAI 171
Query: 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAI 655
AL +++I DEPT+ M+P + ++L+ ++ + ILL +H + + D+I +
Sbjct: 172 ALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231
Query: 656 MANG-SLKCCGSSLFLKHQYGVGYTLTLVKSAPDASAA 692
+ G +++ S + + YT L+++ PD +A
Sbjct: 232 LYCGQTVESAPSEELVTMPHH-PYTQALIRAIPDFGSA 268
|
Length = 330 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 21/178 (11%)
Query: 454 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-ALV 512
K+ KV A G+ ++S++L L + LLG NGAGKST I +L G + P +G+ L
Sbjct: 314 KMEKVSA-GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 513 FGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 572
G I+ G Q + L + + +HL A + LE + + +
Sbjct: 373 KG---------IKLGYFAQHQLEFLRADESPLQHLARLA------PQELEQKLRDYLGGF 417
Query: 573 GL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR--LTWQLI 627
G DKV R SGG K +L L + + +++LDEPT+ +D MR LT LI
Sbjct: 418 GFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-LDMRQALTEALI 474
|
Length = 638 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 51/243 (20%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG--EE 1410
I +R+L+ + +V + + + +G +G+GK+T L + + E
Sbjct: 2 NKIEIRDLKVSF-----GQVEV-LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55
Query: 1411 YP---TDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466
YP G ++ G+DI + D RR + Q + L++ E++ L ++ + +
Sbjct: 56 YPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKS 115
Query: 1467 R--MDDVVMEKLVEFDLLKHAKK----PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
+ + + V L + L K P+ LSGG +++L +A A+ P +++ DEP+
Sbjct: 116 KKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+DP + + L + ++L TH +A + + + GQ+ G + +
Sbjct: 176 NLDPENTAKIESLFLEL---KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
Query: 1581 KTR 1583
T
Sbjct: 233 FTN 235
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 59/247 (23%)
Query: 1363 VYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTDG 1415
VY G + V++ SV A +G +G GK+T L I DG
Sbjct: 53 VYYGDDHALKGVSMDIPEKSVTA-----LIGPSGCGKSTFLRCLNRMNDRIKAAR--IDG 105
Query: 1416 TAFIFGKDIRSD---------------------PKAARRLIGYCPQFDALLEYLTVQEHL 1454
+ + G+DI D PK+ R I Y P+ +
Sbjct: 106 SVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN-------T 158
Query: 1455 ELYARIKGVAEYRMDDVVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIA 1505
L AR+ G R D ++LVE L + A + LSGG +++L +A
Sbjct: 159 GLLARLLG----RDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC 214
Query: 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI 1565
+ DP ++++DEP++ +DPIA + ++I L+ + V++ TH+M +A + + +
Sbjct: 215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISDQTAV 271
Query: 1566 -MVGGQL 1571
+ GG+L
Sbjct: 272 FLTGGEL 278
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 48/196 (24%)
Query: 1358 RNLRKVYP---GGKRSDAKV-AVHSLTFSVQAGECFGFLGTNGAGKTT---TLSMISGEE 1410
+L+K YP G + + V A+ ++F+++ G+ +G +G GK+T L+MI E
Sbjct: 9 IDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI---E 65
Query: 1411 YPTDGTAFIFGKDIRSDPKAARRL---------------------IGYCPQFDALLEYLT 1449
PT G + G+D+ A++L +G L E L
Sbjct: 66 TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVG-----QILEEPLL 120
Query: 1450 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK--HAKKPSFTLSGGNKRKLSVAIAMI 1507
+ L R + +M K+ L+ H + SGG ++++++A A++
Sbjct: 121 INTSLSAAERREKALA------MMAKVG----LRPEHYDRYPHMFSGGQRQRIAIARALM 170
Query: 1508 GDPPIVILDEPSTGMD 1523
DP +V+ DEP + +D
Sbjct: 171 LDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-08
Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 46/244 (18%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D 1427
R D + + ++ ++ GE +G +G+GK+T L ++ G E P G+ F G+D+ D
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 1428 PKAARRLIGYCPQ---------FDALL--EYLTVQEHLELYARIKGVAE------YRMDD 1470
+A RR +G Q F+ + LT+ E E AR+ G+AE M
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEA-ARMAGLAEDIRAMPMGMHT 580
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V+ E TLSGG +++L +A A++ P I++ DE ++ +D + +
Sbjct: 581 VISEG-------------GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627
Query: 1531 WEVISRLS-TRQGKTAVI---LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
E + RL TR VI L+T N RI ++ G++ G+ L R G
Sbjct: 628 SESLERLKVTR----IVIAHRLST-IRN-----ADRIYVLDAGRVVQQGTYDELMAREGL 677
Query: 1587 FLEL 1590
F +L
Sbjct: 678 FAQL 681
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-08
Identities = 47/198 (23%), Positives = 105/198 (53%), Gaps = 7/198 (3%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527
++ L + ++ + ++G GAGKS+ ++ L ++ G ++ ++ + ++R+
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLK--GVKEELLESVVAEMVDE--VGLADKVNIVVR 583
L + PQ +LF TVR +++ F+ + E L + + +++D GL +V+
Sbjct: 1312 LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSM 643
S G ++ LSL AL+ SK+++LDE T+ +D + L + I++ K +L+ H +
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430
Query: 644 DEAEELGDRIAIMANGSL 661
+ + D+I ++++G +
Sbjct: 1431 NTIIDC-DKILVLSSGQV 1447
|
Length = 1495 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 28/210 (13%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526
A+ ++ TL Q+L + G G+GKST +S++ + GD +T +D R
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 527 GLGVCPQYDILF------------PELTVREHLEMFAVLKGVKEELL---ESVVAEMVDE 571
L V Q LF P+ T ++ +E A L V +++L + E V E
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDAT-QQEIEHVARLASVHDDILRLPQGYDTE-VGE 447
Query: 572 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 631
G+ LSGG K+++S+ AL+ +++++ILD+ S +D + +++
Sbjct: 448 RGVM---------LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 632 KGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+GR ++++ H + E I +M +G +
Sbjct: 499 EGRTVIISAHRLSALTE-ASEILVMQHGHI 527
|
Length = 569 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-08
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 22/202 (10%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ LRN+R Y D V + +++ GE +G NG+GK+T +++G P
Sbjct: 323 LELRNVRFAYQ-----DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS 377
Query: 1415 GTAFIFGKDIRSD-PKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMD 1469
G + GK + ++ + R+L FD LL E A + + ++ +
Sbjct: 378 GEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-------PEGKASPQLIEKW-LQ 429
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
+ + L + + LS G K++L++ +A++ + I++LDE + DP +R
Sbjct: 430 RLELAHKTS---LNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 1530 MWEVISRLSTRQGKTAVILTTH 1551
++V+ L QGKT + +H
Sbjct: 487 FYQVLLPLLKEQGKT-IFAISH 507
|
Length = 546 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 58/245 (23%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ + L K+Y +G C V+ LY ++L ++G +G+GK+T + + G + P G
Sbjct: 7 LSVSGLSKLYGPGKG-CRDVS---FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG- 61
Query: 510 ALVFGKNITADMDE-----------------IRKGLGVCPQYDILFPELTVREHLEMFAV 552
+T M + +R G Q R+ L M V
Sbjct: 62 ------TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP--------RDGLRM-QV 106
Query: 553 LKG--VKEELLE-------SVVAEMVD-----EVGLADKVNIVVRALSGGMKRKLSLGIA 598
G + E L+ ++ AE D E+ L D+++ + R SGGM+++L +
Sbjct: 107 SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFSGGMQQRLQIARN 165
Query: 599 LIGDSKVVILDEPTSGMD----PYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 654
L+ ++V +DEPT G+D + L L++++ +I+ TH + A L DR+
Sbjct: 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV--THDLAVARLLADRLM 223
Query: 655 IMANG 659
+M G
Sbjct: 224 VMKQG 228
|
Length = 258 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-08
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
YPGG + +L F + +G NG GK+T L +ISGE P+ GT F
Sbjct: 518 YPGGP-----LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF----- 567
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
RS K R + D L L+ L + GV E ++ L F +
Sbjct: 568 -RS-AK-VRMAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQKL----RAHLGSFGVTG 618
Query: 1484 H-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+ A +P +TLSGG K +++ A P I++LDEPS +D
Sbjct: 619 NLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434
A+ ++ G+ G +G NG+GK+T ++I G PT G + + + +
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-------KVDRNGEVSVIA 91
Query: 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLS 1493
I L LT E++E G + + K++EF +L + +P S
Sbjct: 92 IS-----AGLSGQLTGIENIEFKMLCMGFKRKEIKAM-TPKIIEFSELGEFIYQPVKKYS 145
Query: 1494 GGNKRKLSVAIAMIGDPPIVILDEP-STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
G + KL +I + +P I+++DE S G A++ + ++ Q KT + +H+
Sbjct: 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE--FKEQNKT-IFFVSHN 202
Query: 1553 MNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFL 1588
+ + + CT+I + GG+L+ G + ++ FL
Sbjct: 203 LGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFL 238
|
Length = 264 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 44/237 (18%)
Query: 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 510
+R L K+Y ++G C V+ LY ++L ++G +G+GK+T ++ L + P G+
Sbjct: 8 SVRGLTKLYGPRKG-CRDVS---FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
Query: 511 LVFGKNIT----ADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLKG--VKE 558
++ + E +R G Q+ P R+ L M V G + E
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH----P----RDGLRM-QVSAGGNIGE 114
Query: 559 EL----------LESVVAEMVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607
L + + + ++ V + A +++ + SGGM+++L + L+ ++V
Sbjct: 115 RLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174
Query: 608 LDEPTSGMDPYSMR-----LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
+DEPT G+D S++ L L++++ G +++ TH + A L R+ +M G
Sbjct: 175 MDEPTGGLD-VSVQARLLDLLRGLVREL--GLAVVIVTHDLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 5e-08
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I L+++ + S+ A+ + + G+ +G NG GK+T + G P +
Sbjct: 338 IELKDVHMNPKAPEGSEG-FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G + G + +D + R + D L + +A + +Y + + +
Sbjct: 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY-LQRLEIA 455
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
V+ + + + LS G +++L++ A + D PI++ DE + DP KRF +E +
Sbjct: 456 DKVKIEDGGFS--TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513
Query: 1535 SRLSTRQGKTAVILT 1549
RQGKT +I++
Sbjct: 514 LPDLKRQGKTIIIIS 528
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
L +T + I + G NG GKS+ + M+ G++ P++G+ ++ KN +++ I K
Sbjct: 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN--IYYKNC--NINNIAKPYCTY 74
Query: 532 PQYDI-LFPELTVREHLEMFAVLKGVKEELLESV--VAEMVDEVGLADKVNIVVRALSGG 588
+++ L E+TV E+L+ ++ E+ S + + L D ++ +LS G
Sbjct: 75 IGHNLGLKLEMTVFENLKFWS-------EIYNSAETLYAAIHYFKLHDLLDEKCYSLSSG 127
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI-KKIKKGRIILLTTHS 642
M++ +++ + S + +LDE + + + L LI K G I+LL++H
Sbjct: 128 MQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-08
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 32/206 (15%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEIRK----GLGVCP 532
++ +LG G+G ST + + T G + IT D +EI+K +
Sbjct: 88 ELTVVLGRPGSGCSTLLKTIAS---NTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNA 144
Query: 533 QYDILFPELTVREHLEMFAVLKGV--------KEELLESVVAEMVDEVGLA----DKV-N 579
+ D+ FP LTV E L+ A K +EE + + + GL+ KV N
Sbjct: 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN 204
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 639
VR +SGG ++++S+ A +G +K+ D T G+D + + I+ +K IL T
Sbjct: 205 DFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT---ALEFIRALKTSANILDT 261
Query: 640 THSM------DEAEELGDRIAIMANG 659
T + +A EL D++ ++ G
Sbjct: 262 TPLVAIYQCSQDAYELFDKVIVLYEG 287
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 6e-08
Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 41/256 (16%)
Query: 1322 QSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTF 1381
++S + DI + ER +V G + + +N +Y G + KV L+
Sbjct: 9 ETSKSAPAETATRDIYLPPERKKVSGGGKPHVVA--KNF-SIYYGEFEAVKKVNADILSK 65
Query: 1382 SVQAGECFGFLGTNGAGKTTTLSMIS--GEEYP---TDGTAFIFGKDIR---SDPKAARR 1433
V A +G +G GK+T L I+ + P T G G+DI +D R+
Sbjct: 66 YVTA-----IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120
Query: 1434 LIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA---- 1485
IG Q F ++ +++ R+ G+ D +E++VE L K A
Sbjct: 121 KIGMVFQKPNPFPK-----SIFDNIAYGPRLHGIN----DKKQLEEIVEKSLRKAALWDE 171
Query: 1486 -----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1540
K + LSGG +++L VA + +P I++LDEP++ +DP A + ++I L
Sbjct: 172 VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL--- 228
Query: 1541 QGKTAVILTTHSMNEA 1556
+G +++ TH+M +A
Sbjct: 229 RGSYTIMIVTHNMQQA 244
|
Length = 286 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 6e-08
Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 1392 LGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQF 1441
+G +G GK+T L ++SG +G + ++I S D R+ +G Q
Sbjct: 36 IGPSGCGKSTLLRALNRMNDIVSGARL--EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 1442 DALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGGN 1496
++ +++ R+ G A+ R+D+VV + L + L K K LSGG
Sbjct: 94 PNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152
Query: 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
+++L +A + +P ++++DEP + +DP++ + E++ L +Q T I+ TH+M +A
Sbjct: 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL--KQNYTIAIV-THNMQQA 209
Query: 1557 QALCTRIGIMVGGQL 1571
G ++ G L
Sbjct: 210 ARASDWTGFLLTGDL 224
|
Length = 251 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-08
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1430
+ ++ ++F++ G+ +G +GAGK+T L ++ G+ I G+DIR ++
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334
Query: 1431 ARRLIGYCPQ----FDALLEYL-----TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1481
RR IG PQ F+ + Y E+ A + + ++ L E
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH----DFIQSLPEGYD 390
Query: 1482 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
++ LSGG K+++++A ++ +PPI+ILDE ++ +D ++ + + +S
Sbjct: 391 TGVGER-GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--A 447
Query: 1542 GKTAVIL 1548
G+T +++
Sbjct: 448 GRTTLVI 454
|
Length = 497 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 1468 MDDVVMEKLVEFDLLKHAK----KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+D++V L + L K K + TLSGG +++L +A A+ P I+++DEP++ +D
Sbjct: 136 LDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
PI+ + E + L +I+ TH+M +A
Sbjct: 196 PISTMQLEETMFELKK---NYTIIIVTHNMQQA 225
|
Length = 267 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 22/214 (10%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKAARRLI 1435
L+ V+AGE +G NGAGK+T L+ ++G P G+ G+ + S + AR
Sbjct: 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHR- 71
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK---PSFTL 1492
Y Q + V ++L L+ + + + ++ E L K L
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLH-QPDKTRTEAVASAL-NEVAE--ALGLDDKLGRSVNQL 127
Query: 1493 SGGN-KR-KLSVAIAMIGDPPI------VILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544
SGG +R +L+ + + P I ++LDEP +D + + ++S L +QG
Sbjct: 128 SGGEWQRVRLAAVVLQV-WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC-QQG-I 184
Query: 1545 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
AV++++H +N R+ ++ G+L G
Sbjct: 185 AVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
|
Length = 248 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 7e-08
Identities = 35/143 (24%), Positives = 74/143 (51%), Gaps = 19/143 (13%)
Query: 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQY 534
+YE +++ ++G NG GK+T +L G++ P G+ + ++ K PQY
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-------VDPELKISYK-----PQY 408
Query: 535 DILFPELTVREHLEMFAVLKGVKEELLESVV-AEMVDEVGLADKVNIVVRALSGGMKRKL 593
+ TV + +L+ + ++L S +E++ + L ++ V+ LSGG +++
Sbjct: 409 IKPDYDGTVED------LLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRV 462
Query: 594 SLGIALIGDSKVVILDEPTSGMD 616
++ L D+ + +LDEP++ +D
Sbjct: 463 AIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-07
Identities = 60/256 (23%), Positives = 117/256 (45%), Gaps = 22/256 (8%)
Query: 1339 QVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1398
+ L+ +I +++ YP R D V + LTF++ GE +G +G+G
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQDVSFSYP--NRPDVPV-LKGLTFTLHPGEVVALVGPSGSG 519
Query: 1399 KTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELY 1457
K+T +++ PT G + G + D R + Q + +L +V+E++ Y
Sbjct: 520 KSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQ-EPVLFSGSVRENI-AY 577
Query: 1458 -------ARIKGVA-EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509
I A D +ME +D + +K S LSGG K+++++A A++
Sbjct: 578 GLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT-EVGEKGSQ-LSGGQKQRIAIARALVRK 635
Query: 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
P ++ILDE ++ +D ++ + E +R +T V+L H ++ + +I ++ G
Sbjct: 636 PRVLILDEATSALDAECEQLLQE----SRSRASRT-VLLIAHRLSTVER-ADQILVLKKG 689
Query: 1570 QLRCIGSPQHLKTRFG 1585
+ +G+ + L G
Sbjct: 690 SVVEMGTHKQLMEDQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 37/263 (14%)
Query: 438 LDMKQQEVDGRC--------IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNG 489
LD++Q++ +G+ I+ R + Y K A+ ++ + + +AL+G +G
Sbjct: 322 LDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSG 379
Query: 490 AGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTV----- 543
+GKST ++L G+ L+ G ++ + +R + + Q LF + T+
Sbjct: 380 SGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIA 438
Query: 544 --------REHLEMFAVLKGVKE--ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 593
RE +E A + + +++ + ++ E G+ LSGG ++++
Sbjct: 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL---------LSGGQRQRI 489
Query: 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI 653
++ AL+ DS ++ILDE TS +D S R + +++K R L+ H + E+ D I
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEI 548
Query: 654 AIMANGSLKCCGSSLFLKHQYGV 676
++ +G + G+ L Q GV
Sbjct: 549 LVVEDGEIVERGTHAELLAQNGV 571
|
Length = 582 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 43/199 (21%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD------ 522
+ ++ L++ + + L G +G+GKST + L P G LV + D+
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 523 --EIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV- 578
E+R +G Q+ + P ++ + + + +GV E+ + A+++ + L +++
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLW 146
Query: 579 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIIL 637
++ SGG ++++++ I D +++LDEPT+ +D + + +LI++ K +G ++
Sbjct: 147 SLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206
Query: 638 LTTHSMDEAEELGDRIAIM 656
H + E + DR+ +
Sbjct: 207 GIFHDEEVREAVADRLLDV 225
|
Length = 235 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-07
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 64/285 (22%)
Query: 1339 QVERNRVLSGSVDNAIIYLRNLRKVYP--GG--KRSDAKV-AVHSLTFSVQAGECFGFLG 1393
+E++ V+ G I+ +RNL +P G R +V AV ++F + GE +G
Sbjct: 301 PIEQDTVVDG---EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVG 357
Query: 1394 TNGAGKTTT----LSMISGEEYPTDGTAFIFG----------------KDIR---SDPKA 1430
+G+GK+TT L ++ + G IF +DI+ DP A
Sbjct: 358 ESGSGKSTTGRALLRLVE-----SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYA 412
Query: 1431 A---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK--HA 1485
+ R+ +G +++E L V L A VA L+E L HA
Sbjct: 413 SLDPRQTVGD-----SIMEPLRVHGLLPGKAAAARVAW----------LLERVGLLPEHA 457
Query: 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545
+ SGG ++++ +A A+ +P ++I DE + +D + + ++ L G A
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG-IA 516
Query: 1546 VILTTHSMNEAQALCTRIGIMVGGQLRCIG-------SPQHLKTR 1583
+ +H M + + R+ +M GQ+ IG +PQH TR
Sbjct: 517 YLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 38/224 (16%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-SDPKAA-- 1431
++ ++F + GE G G GA +T + + G + GT + GK I + A
Sbjct: 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322
Query: 1432 ---------RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR-----MDDVVMEKLV 1477
RR G D + + I + Y+ +D+ M+
Sbjct: 323 HGFALVTEERRSTGIYAYLD-----------IGFNSLISNIRNYKNKVGLLDNSRMKSDT 371
Query: 1478 EF--DLLKHAKKPSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
++ D ++ K P +LSGGN++K+ + ++ P I++LDEP+ G+D AK +
Sbjct: 372 QWVIDSMR-VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI 1574
+++I+ L+ ++ K +I+ + M E + RI +M G + I
Sbjct: 431 YQLIAELA-KKDK-GIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-07
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 1386 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1445
GE G +G NG GKTT +++G P +G ++ + K I Y PQ+
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-------EVDPELK-----ISYKPQYIKPD 412
Query: 1446 EYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1505
TV++ L G + Y+ + +++ L LL K LSGG +++++A
Sbjct: 413 YDGTVEDLLRSITDDLGSSYYKSE--IIKPLQLERLL---DKNVKDLSGGELQRVAIAAC 467
Query: 1506 MIGDPPIVILDEPSTGMDPIAKRFM-WEVISRLSTRQGKTAVI 1547
+ D + +LDEPS +D + +R + I R++ + TA++
Sbjct: 468 LSRDADLYLLDEPSAHLD-VEQRLAVAKAIRRIAEEREATALV 509
|
Length = 590 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKAARRLI 1435
L+ V+AGE +G NGAGK+T L+ ++G G+ G+ + S + AR
Sbjct: 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGSGSIQFAGQPLEAWSATELARHR- 74
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGG 1495
Y Q + V +L L+ K E ++DV L D L + LSGG
Sbjct: 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTE-LLNDVA-GALALDDKLGRSTN---QLSGG 129
Query: 1496 NKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
+++ +A ++ P +++LDEP +D + + ++S L +QG A+++
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC-QQGL-AIVM 187
Query: 1549 TTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
++H +N R ++ G+L G + + T
Sbjct: 188 SSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221
|
Length = 248 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 450 IQIRKLHKVYATKRG------NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 503
+Q L K Y KRG A++ + TL + LA++G +G GKST +L +
Sbjct: 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65
Query: 504 PPTTGDALVFGKNITADMDEIRKGLGVCPQ------YDILFPELTVREHLEMFAVLKGVK 557
PT G+ G+++ E +K L Q Y L P V + LE
Sbjct: 66 TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE--------- 116
Query: 558 EELL----------ESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLSLGIALIGDS 603
E LL M+ +VGL D+ SGG ++++++ AL+ D
Sbjct: 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP---HMFSGGQRQRIAIARALMLDP 173
Query: 604 KVVILDEPTSGMD 616
VV+ DEP S +D
Sbjct: 174 DVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 44/255 (17%)
Query: 1358 RNLRKVY---PGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
RNL K + G R AV L+F+++ G+ +G NG+GK+T M++G PT
Sbjct: 8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 1415 GTAFI------FG------KDIR---SDPKAA---RRLIGYCPQFDALLEY-LTVQEHLE 1455
G I FG + IR DP + R+ I +L++ L + LE
Sbjct: 68 GELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRIS------QILDFPLRLNTDLE 121
Query: 1456 LYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514
R K + +E L + LL HA L+ G K++L +A A+I P ++I
Sbjct: 122 PEQREKQI---------IETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVII 172
Query: 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH-SMNEA---QALCTRIGIMV--G 1568
DE +D + + ++ L +QG + + +T H M + Q L G +V G
Sbjct: 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232
Query: 1569 GQLRCIGSPQHLKTR 1583
+ SP H T+
Sbjct: 233 STADVLASPLHELTK 247
|
Length = 267 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
L+ G +K+ +AIA+ P ++I DEP+ M+P + ++ ++SRL+ T ++L +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN-TTILLISH 217
Query: 1552 SMNEAQALCTRIGIMVGGQ 1570
+ +I ++ GQ
Sbjct: 218 DLQMISQWADKINVLYCGQ 236
|
Length = 330 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 54/245 (22%), Positives = 123/245 (50%), Gaps = 25/245 (10%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVF-GKNITADMDE 523
AV+ + ++ + +++ ++G +G+GKS + ++GLI + L F G+++ ++
Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81
Query: 524 IRKGLGVCPQYDILF--------PELTV-REHLEMFAVLKGVKEELLESVVAEMVDEVGL 574
R+ L V + ++F P TV + +E V +G ++ +++++VG+
Sbjct: 82 ERRNL-VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGI 140
Query: 575 AD---KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI- 630
D ++++ LSGGM +++ + +A+ K++I DEPT+ +D + + Q+I+ +
Sbjct: 141 PDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD---VTIQAQIIELLL 197
Query: 631 ----KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSA 686
K+ ++L TH + E +I +M G + G + + YT L+++
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRAL 257
Query: 687 PDASA 691
P+ +
Sbjct: 258 PEFAQ 262
|
Length = 326 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 22/224 (9%)
Query: 1368 KRSDAKVAV-HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS 1426
K ++ AV +++FS+ G+ G LG G+GK+T LS T+G I G S
Sbjct: 11 KYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS 69
Query: 1427 DP-KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV-------- 1477
P + R+ G PQ + T +++L+ Y + +++ + V K V
Sbjct: 70 VPLQKWRKAFGVIPQ-KVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQL 128
Query: 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR- 1536
+F L+ LS G+K+ + +A +++ I++LDEPS +DPI ++VI +
Sbjct: 129 DFVLVDGG----CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT----YQVIRKT 180
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
L VIL+ H + EA C R ++ ++R S Q L
Sbjct: 181 LKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVRQYDSIQKL 223
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 23/229 (10%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE---EYPTDGTAFIFGKDIRSD 1427
+ + L+ ++ G LG NGAGK+T L ++G+ G + +
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71
Query: 1428 PKAA------RRLIGYCPQFDALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLV 1477
P AA RL PQ + +E + L +AR G +R ++ + L
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAM---------IGDPPIVILDEPSTGMDPIAKR 1528
+ TLSGG ++ A + P ++LDEP+ +D +
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
+ + + RL+ R V+ H N A RI ++ G + G+P
Sbjct: 192 RLLDTVRRLA-RDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
Length = 272 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 38/215 (17%)
Query: 1362 KVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTL-------SMISGEEYPTD 1414
KV+ GG A V VH + A + F+G +G GK+T L +I G + +
Sbjct: 27 KVFYGGFL--ALVDVH---LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK--VE 79
Query: 1415 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
G ++I D + RR +G Q ++ E++ R G Y+ +
Sbjct: 80 GRLLYRDRNI-YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKGN- 133
Query: 1471 VVMEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
+++LVE L + A K+ LSGG +++L +A A+ P ++++DEP +
Sbjct: 134 --LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
+DPI+ R + E+ L ++ T +I+ TH+M +A
Sbjct: 192 LDPISTRQVEELC--LELKEQYT-IIMVTHNMQQA 223
|
Length = 274 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-07
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+ N+ K +PG K A+ ++ V+ +G NGAGK+T L + G G+
Sbjct: 1 MSNISKSFPGVK------ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
Query: 1417 AFIFGKDI--RSDPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKG--VAEYRMDD 1470
GK+I +S +A I Q L+ +V +++ L Y KG V + +M
Sbjct: 55 ILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT-KGMFVDQDKMYR 113
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
E D+ + TLS + + +A A + IVI+DEP++ + +
Sbjct: 114 DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
+ +I +L R ++ +H M E LC I I+ GQ
Sbjct: 174 FTIIRKLKER--GCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-07
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 527
V + Q +A++G GAGK+T I++L + PT G L+ G +I T + +RK
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN---IVV-- 582
+ Q LF ++RE++ + EE+ E+ A + + + N +V
Sbjct: 411 IATVFQDAGLF-NRSIRENIRL-GREGATDEEVYEAAKAAAAHDF-ILKRSNGYDTLVGE 467
Query: 583 --RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTT 640
LSGG +++L++ A++ ++ +++LDE TS +D + I ++K R +
Sbjct: 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA 527
Query: 641 HSMDEAEELGDRIAIMANGSL 661
H + D + + G L
Sbjct: 528 HRLSTVRN-ADLVLFLDQGRL 547
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-07
Identities = 61/258 (23%), Positives = 115/258 (44%), Gaps = 32/258 (12%)
Query: 1351 DNAIIYLRNLRKVYPGGKR-----------SDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1399
+I + +K +P G + + + L+FSV+ G+ G LG G+GK
Sbjct: 1199 TVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGK 1258
Query: 1400 TTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA 1458
+T LS + T+G I G S + R+ G PQ + T +++L+ Y
Sbjct: 1259 STLLSALL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE 1316
Query: 1459 RIKGVAEYRM-DDVVMEKLVE-------FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510
+ +++ ++V ++ ++E F L+ + LS G+K+ + +A +++
Sbjct: 1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG----YVLSNGHKQLMCLARSILSKA 1372
Query: 1511 PIVILDEPSTGMDPIAKRFMWEVISR-LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
I++LDEPS +DP+ ++I + L VIL+ H + EA C + ++ G
Sbjct: 1373 KILLLDEPSAHLDPVT----LQIIRKTLKQSFSNCTVILSEHRV-EALLECQQFLVIEGS 1427
Query: 1570 QLRCIGSPQHLKTRFGNF 1587
++ S Q L F
Sbjct: 1428 SVKQYDSIQKLLNETSLF 1445
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-07
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 1381 FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI------RSDPKAARRL 1434
++ E +G NGAGK+T + +++GE DG I+ +D+ + P+
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLIVARLQQDPPRNVEGT 82
Query: 1435 IGYCPQFDALLEYLTVQ-EHLELY-------------------ARIKGVAEY----RMDD 1470
+ +D + E + Q E+L+ Y A+++ ++ ++++
Sbjct: 83 V-----YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+ E L + L +LSGG RK ++ A++ +P +++LDEP+ +D
Sbjct: 138 RINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 68/284 (23%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ IR L + T G AV+ + +TL E +I L+G +G+GKS + G+ T D
Sbjct: 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV----TKD 59
Query: 510 ALVFGKNITAD---MDEIRKGLGVCPQYDILFPELTVRE-------HLEMF-----AVL- 553
+TAD D+I D+L L+ RE ++ M + L
Sbjct: 60 NW----RVTADRMRFDDI----------DLL--RLSPRERRKLVGHNVSMIFQEPQSCLD 103
Query: 554 --KGVKEELLESV-------------------VAEMVDEVGLADKVNIVVR---ALSGGM 589
+ V +L++++ E++ VG+ D + + L+ G
Sbjct: 104 PSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAE 647
+K+ + IAL +++I DEPT+ M+P + ++L+ ++ + ILL +H +
Sbjct: 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLS 223
Query: 648 ELGDRIAIMANGSLKCCGSS---LFLKHQYGVGYTLTLVKSAPD 688
+ D+I ++ G S + H YT L+++ PD
Sbjct: 224 QWADKINVLYCGQTVETAPSKELVTTPHH---PYTQALIRAIPD 264
|
Length = 330 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 28/232 (12%)
Query: 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSD 1427
A+ VH ++ ++Q G +G +G+GK+ T + G T G + GK +
Sbjct: 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV--A 72
Query: 1428 PKAAR-RLIGYCPQ-----FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1481
P A R R I Q F+ L T+ H G D + L L
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLH---TMHTHARETCLALGKP--ADDATLTAALEAVGL 127
Query: 1482 LKHAKKPS---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1538
A+ F +SGG +++ +A+A++ + P +I DEP+T +D +A+ + +++ +
Sbjct: 128 ENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187
Query: 1539 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS-------PQHLKTR 1583
++ ++L TH M L + +M G++ G P+H TR
Sbjct: 188 QKRA-LGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
|
Length = 254 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-07
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 426 LDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRG-------NCCAVNSLQLTLYE 478
L++ EP + + L + + + +L + ++G + V ++ TL
Sbjct: 257 LNS-EPSGDPVPLPEPASPL----LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP 311
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI----TADMDEIRKGLGVCPQ- 533
+ L L+G +G+GKSTT L+ LI + G+ G+ + + +R + V Q
Sbjct: 312 GETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQD 370
Query: 534 -YDILFPELTVR----EHLEM-FAVLKGVKEELLESVVAEMVDEVGL-ADKVNIVVRALS 586
L P L V E L + L + E + V+A M +EVGL + + S
Sbjct: 371 PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE--QQVIAVM-EEVGLDPETRHRYPAEFS 427
Query: 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
GG ++++++ ALI ++ILDEPTS +D
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 51/206 (24%)
Query: 1354 IIY-LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
IY + + KV P K + ++ S G G LG NGAGK+T L +++G +
Sbjct: 3 YIYTMNRVSKVVPPKK-----EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE 57
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGV-------- 1463
+G A I+ +GY PQ L TV+E++E A IK
Sbjct: 58 FNGEAR-PAPGIK---------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEIS 107
Query: 1464 AEYRMDDVVMEKLVE-----FDLLKHAK---------------------KPSFTLSGGNK 1497
A++ D M+ L+ +++ A LSGG +
Sbjct: 108 AKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGER 167
Query: 1498 RKLSVAIAMIGDPPIVILDEPSTGMD 1523
R++++ ++ P +++LDEP+ +D
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 28/103 (27%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 1459 RIKGVAEYRMDDVVMEKLVE----FDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513
+I G+ + + D ++EK + +D LK ++ LSGG +++L +A + +P ++
Sbjct: 130 KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI 189
Query: 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556
++DEP++ +DPI+ + E++ L + ++I+ TH+M +A
Sbjct: 190 LMDEPTSALDPISTLKVEELVQEL---KKDYSIIIVTHNMQQA 229
|
Length = 271 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 30/198 (15%)
Query: 1393 GTNGAGKTTTLSMISGEEYPTDG-------TAFIFGKDIRSDPKAARRLIGYCPQFDA-L 1444
G +GAGKT+ ++ ISG P G F K I P+ +R IGY Q DA L
Sbjct: 31 GRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQ-DARL 87
Query: 1445 LEYLTVQEHLELYARIKGVAEYR---MDDVVMEKLVEFD-LLKHAKKPSFTLSGGNKRKL 1500
+ V+ +L Y G+A+ D +V L+ + LL + P +LSGG K++
Sbjct: 88 FPHYKVRGNL-RY----GMAKSMVAQFDKIV--ALLGIEPLLD--RYPG-SLSGGEKQR- 136
Query: 1501 SVAI--AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1558
VAI A++ P ++++DEP +D KR + + RL+ R+ ++ +HS++E
Sbjct: 137 -VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA-REINIPILYVSHSLDEILR 194
Query: 1559 LCTRIGIMVGGQLRCIGS 1576
L R+ ++ G+++ G
Sbjct: 195 LADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSDPKAA 1431
+ L S+ GE +G NG+GK+T +I+G +P +G G+ I
Sbjct: 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKGESILDLEPEE 80
Query: 1432 RRLIGYCPQFDALLEYLTV--QEHLEL-Y-ARIKGVAEYRMD-----DVVMEKLVEFDLL 1482
R +G F +E V + L L Y ++ K +D +++ EKL +
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM- 139
Query: 1483 KHAKKPSFT-------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
PSF SGG K++ + + D + ILDE +G+D A + + E I+
Sbjct: 140 ----DPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1536 RLSTRQGKTAVILTTH 1551
+L T + ++IL TH
Sbjct: 196 KLMTSE--NSIILITH 209
|
Length = 252 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 1393 GTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1452
G NG GK++ L MI+G P+ G + +I + K IG+ LE +TV E
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH--NLGLKLE-MTVFE 89
Query: 1453 HLELYARIKGVAE--------YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAI 1504
+L+ ++ I AE +++ D++ EK ++LS G ++ +++A
Sbjct: 90 NLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC-------------YSLSSGMQKIVAIAR 136
Query: 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
+ + +LDE T + + + +I + G V+L++H
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGG--IVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPE 540
+A++G +GAGKST + +L +G + G++I +R+ +G+ PQ +LF
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF-- 349
Query: 541 LTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLADKVNIVVRALSGGMKRKLS 594
+ + EE+ + A + + G V LSGG K++++
Sbjct: 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409
Query: 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA 654
+ ++ + ++ILDE TS +D ++ + ++++ GR L+ H + + D I
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEII 468
Query: 655 IMANGSL 661
++ NG +
Sbjct: 469 VLDNGRI 475
|
Length = 497 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
+ + LTL Q +AL+G +G+GKST ++ GL P +G+ L G +EI + +
Sbjct: 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI----PREEIPREV 550
Query: 529 GVCP----QYDILFPELTVREHLEMF-------AVLKGVKEELLESVVAEMVDEVGLADK 577
DI E TVR++L ++ +++ K+ + V+ G +
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPG--GYDAE 608
Query: 578 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+ LSGG +++L + AL+ + ++ILDE TS +DP
Sbjct: 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-06
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPE 540
+ ++G GAGKS+ ++ L ++ G L+ G +I+ + ++RK LG+ PQ +LF
Sbjct: 1268 VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG 1327
Query: 541 LTVREHLEMFAVLKGVKEELLESVV-AEMVDEV-----GLADKVNIVVRALSGGMKRKLS 594
TVR +L+ F +L ES+ A + D + GL +V+ S G ++ LS
Sbjct: 1328 -TVRFNLDPFNEHNDA--DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384
Query: 595 LGIALIGDSKVVILDEPTSGMD 616
L AL+ SK+++LDE T+ +D
Sbjct: 1385 LARALLRRSKILVLDEATAAVD 1406
|
Length = 1622 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 1391 FLGTNGAGKTTTL-------SMISGEEYPTDGTAFIFGKDIRS---DPKAARRLIGYCPQ 1440
+G +G GK+T + +I G + +G ++ G DI D R+ +G Q
Sbjct: 34 LIGPSGCGKSTFIRTLNRMNDLIPG--FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQ 91
Query: 1441 FDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLKHAK----KPSFTLSGG 1495
++ +++ RI G E +++ V E L L K K + LSGG
Sbjct: 92 KPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGG 150
Query: 1496 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE 1555
+++L +A + P ++++DEP + +DPI+ + ++I +L + +++ TH+M +
Sbjct: 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL---KEDYTIVIVTHNMQQ 207
Query: 1556 AQALCTRIGIMVGGQL 1571
A + + G++
Sbjct: 208 ATRVSKYTSFFLNGEI 223
|
Length = 250 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-06
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 53/249 (21%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKT-TTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433
AV +L+FS+Q GE +G +G+GK+ T L+++ E G ++ D RR
Sbjct: 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--------GGLVQCDKMLLRR 82
Query: 1434 ----LIGYCPQFDALL-------------EYLT-----------VQEHLELY---ARIKG 1462
+I Q A + E +T + E + L+ +R +
Sbjct: 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1463 VAEY-RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTG 1521
+ E RM D V + L ++ + LSGG ++++ +A+A+ P ++I DEP+T
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQ----LSGGMRQRVMIAMALSCRPAVLIADEPTTA 198
Query: 1522 MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS----- 1576
+D + + ++I L ++ VI TH M + R+ +M G+ GS
Sbjct: 199 LDVTIQAQILQLIKVLQ-KEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257
Query: 1577 --PQHLKTR 1583
PQH TR
Sbjct: 258 HAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK 1429
D K L F++ AG+ +G +GAGKT+ L+ + G P G+ I G ++R DP+
Sbjct: 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPE 419
Query: 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV------EF-DLL 1482
+ R+ + + Q + L + T+++++ L D +++ + EF LL
Sbjct: 420 SWRKHLSWVGQ-NPQLPHGTLRDNVLL-------GNPDASDEQLQQALENAWVSEFLPLL 471
Query: 1483 KHA-----KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
+ LS G ++L++A A++ +++LDEP+ +D +++ + + ++
Sbjct: 472 PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 1538 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
S RQ ++ TH + + +I +M GQ+ G L G F L
Sbjct: 532 SRRQ---TTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 574 LADKVNIVVRALSGGMKRKLSLGIALI---GDSKVVILDEPTSGMDPYSMRLTWQLIKKI 630
L + ++++ +S G KR L+L +AL+ ++++DEP +G+ P +R +L+K++
Sbjct: 179 LLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL 238
Query: 631 KKGRI-ILLTTHS 642
+ ++ TTHS
Sbjct: 239 SEKGAQLIFTTHS 251
|
Length = 256 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-06
Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 37/229 (16%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-------PKAARRLI 1435
++ GE LG G+G +T L I+ TDG I D K R +
Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASN---TDGFHIGVEGVITYDGITPEEIKKHYRGDV 140
Query: 1436 GYCPQFDALLEYLTVQEHLELYARIKGVA---------EYR--MDDVVMEKLVEFDLLKH 1484
Y + D +LTV E L+ AR K EY + DV M L H
Sbjct: 141 VYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG----LSH 196
Query: 1485 AKKPSF------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL- 1537
+ +SGG ++++S+A A +G I D + G+D E I L
Sbjct: 197 TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA---LEFIRALK 253
Query: 1538 -STRQGKTAVILTTHSMNE-AQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584
S T ++ + ++ A L ++ ++ G G K F
Sbjct: 254 TSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-06
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 31/207 (14%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMI-SGEEYPT 1413
+ LRN+ Y D +V + +++ GE +G NG+GK +TL+M+ +G P
Sbjct: 323 LELRNVTFAYQ-----DNGFSVGPINLTIKRGELLFLIGGNGSGK-STLAMLLTGLYQPQ 376
Query: 1414 DGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G + GK + + P+ R+L V L+ ++ G + +
Sbjct: 377 SGEILLDGKPVTAEQPEDYRKLFS------------AVFTDFHLFDQLLGPEGKPANPAL 424
Query: 1473 MEKLVEFDLLKHAKKPSFT--------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
+EK +E LK A K LS G K++L++ +A+ + I++LDE + DP
Sbjct: 425 VEKWLER--LKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTH 1551
+R ++V+ L GKT + +H
Sbjct: 483 HFRREFYQVLLPLLQEMGKT-IFAISH 508
|
Length = 547 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 34/146 (23%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ---YDILF 538
LA++G NG GK+T + LVG + P +G + + +N +G Q YD F
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSENAN---------IGYYAQDHAYD--F 395
Query: 539 PE-LTVREHLEMFA-------VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 590
LT+ + + + ++G LL S D + V+ LSGG K
Sbjct: 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS-----------QDDIKKSVKVLSGGEK 444
Query: 591 RKLSLGIALIGDSKVVILDEPTSGMD 616
++ G ++ V+++DEPT+ MD
Sbjct: 445 GRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 6e-06
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 1454 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI---GDP 1510
+ R E ++ D+V +E DLL+ K +S G KR L++ +A++
Sbjct: 152 ILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKG 211
Query: 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1552
++++DEP G+ P R + E++ LS + + +I TTHS
Sbjct: 212 SLLLIDEPENGLHPKLLRKLVELLKELSEKGAQ--LIFTTHS 251
|
Length = 256 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 60/186 (32%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFD 1442
V+ GE G +G NG GKTT + +++G+ P + D Y PQ+
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-------NDEWD----GITPVYKPQY- 69
Query: 1443 ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1502
LSGG +++++
Sbjct: 70 -----------------------------------------------IDLSGGELQRVAI 82
Query: 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1562
A A++ + + DEPS +D + I RLS KTA+++ H + L R
Sbjct: 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVV-EHDLAVLDYLSDR 141
Query: 1563 IGIMVG 1568
I + G
Sbjct: 142 IHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-06
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-PTTGDALVFGK--NITADMDEIR 525
V+ + +L +IL + G GAG++ + L G P G+ + GK I I
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337
Query: 526 KGLGVCPQ---YDILFPELTVREH-----LEMFAVLKGVKEELLESVVAEMVDEVGL-AD 576
+G+ + P+ D + P + V ++ L+ F + + + E + + +
Sbjct: 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA 397
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRI 635
+ + LSGG ++K L L+ + K++ILDEPT G+D + ++LI ++ ++G
Sbjct: 398 SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA 457
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLK 662
I++ + + E L DR+ +M G LK
Sbjct: 458 IIVISSELPEVLGLSDRVLVMHEGKLK 484
|
Length = 506 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
+ +I NL K + K+ + L+F + G G +G NGAGK+T MI+G+E
Sbjct: 320 DKVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373
Query: 1412 PTDGT 1416
P GT
Sbjct: 374 PDSGT 378
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-06
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 483 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQ-----YDI 536
AL+GH G+GKST S+L+G P T G+ + G+ + + +R+G+ + Q D
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 537 LFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEVGLADKVNIVV----RALSGGMKR 591
+T+ + V + LE+V +AE+ L D + + LS G K+
Sbjct: 431 FLANVTLGRDISEEQVW-----QALETVQLAELAR--SLPDGLYTPLGEQGNNLSVGQKQ 483
Query: 592 KLSLGIALIGDSKVVILDEPTSGMD 616
L+L L+ +++ILDE T+ +D
Sbjct: 484 LLALARVLVQTPQILILDEATANID 508
|
Length = 592 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-06
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1489 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
+ L+ G +K+ +AIA+ P ++I DEP+ M+P + ++ +++RL+ + T ++L
Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN-QNNNTTILL 214
Query: 1549 TTHSMNEAQALCTRIGIMVGGQ 1570
+H + +I ++ GQ
Sbjct: 215 ISHDLQMLSQWADKINVLYCGQ 236
|
Length = 330 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-05
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 30/170 (17%)
Query: 473 QLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD------------ 520
+L + +N+ + L+G NGAGKST + +L G + G +++ +++
Sbjct: 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLIVARLQQDPPRNVEG 81
Query: 521 --MDEIRKGLG----VCPQYDILFPELTVREHLEMFAVLKGVKEEL-------LESVVAE 567
D + +G+ +Y + + + L ++E+L LE+ + E
Sbjct: 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINE 141
Query: 568 MVDEVGL-ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
++ ++GL D + +LSGG RK +LG AL+ + V++LDEPT+ +D
Sbjct: 142 VLAQLGLDPDAA---LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
+ L + + ++LA+ G G+GK++ + +++G + P+ G G+ +
Sbjct: 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ISFS 103
Query: 532 PQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV---DEVGLADKVNIVVR----A 584
Q+ + P T++E++ +F V E +SVV D +K N V+
Sbjct: 104 SQFSWIMPG-TIKENI-IFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT 159
Query: 585 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHSM 643
LSGG + ++SL A+ D+ + +LD P +D ++ + ++ + K+ + +L T M
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 644 DEAEELGDRIAIMANGS 660
+ ++ D+I I+ GS
Sbjct: 220 EHLKK-ADKILILHEGS 235
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-05
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 1386 GECFGFLGTNGAGKTTTLSMISGE--------EYPTDGTAFI-----------FGKDIRS 1426
G+ G LG NG GK+T L +++GE E P I F K
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 1427 DPKAARRLIGYCPQF-DALLEYL--TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
+ +A + PQ+ D + + + V E L+ +G + ++ + +E +++ D+ +
Sbjct: 160 ELRAVHK-----PQYVDLIPKVVKGKVGELLKK-VDERGKFDEVVERLGLENVLDRDVSE 213
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-MWEVISRLSTRQG 1542
LSGG +++++A A++ D + DEPS+ +D I +R VI L+ +
Sbjct: 214 --------LSGGELQRVAIAAALLRDADVYFFDEPSSYLD-IRQRLNAARVIRELA--ED 262
Query: 1543 KTAVILTTHSM 1553
VI+ H +
Sbjct: 263 GKYVIVVEHDL 273
|
Length = 591 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-05
Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 29/199 (14%)
Query: 483 ALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPEL 541
A++G +G+GKST + +L+G P +G G+++ D+ +R+ LGV Q L
Sbjct: 483 AIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541
Query: 542 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-------NIVVR----ALSGGMK 590
++ E++ A L +E E A M GLA+ + + V+ LSGG +
Sbjct: 542 SIFENIAGGAPL--TLDEAWE--AARM---AGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594
Query: 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL---LTTHSMDEAE 647
++L + AL+ ++++ DE TS +D + + + ++++K RI++ L+T + A
Sbjct: 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLST--IRNA- 651
Query: 648 ELGDRIAIMANGSLKCCGS 666
DRI ++ G + G+
Sbjct: 652 ---DRIYVLDAGRVVQQGT 667
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 45/168 (26%)
Query: 484 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 543
+LG NGAGKST + ++ G+ G+A I +G PQ L P TV
Sbjct: 36 VLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIK---------VGYLPQEPQLDPTKTV 85
Query: 544 REHLEM-FAVLKGVKEEL-------------LESVVAEM------VDEVGLAD---KVNI 580
RE++E A +K + +++++AE +D D K+ I
Sbjct: 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI 145
Query: 581 VVRAL------------SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+ AL SGG +R+++L L+ +++LDEPT+ +D
Sbjct: 146 AMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-05
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
+ +I NL K + ++ + L+FS+ G G +G NGAGK+T MI+G+E
Sbjct: 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375
Query: 1412 PTDGT 1416
P GT
Sbjct: 376 PDSGT 380
|
Length = 556 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 49/209 (23%)
Query: 454 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVF 513
L + ++ L + + L + G +GAGK++ + L GL P +G
Sbjct: 394 TLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG----- 448
Query: 514 GKNITADMDEIRKGLGVCPQYDILF-------PELTVRE------------HLEMFAVLK 554
+ + +LF P+ T+RE E+ AVL
Sbjct: 449 -------------RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLH 495
Query: 555 GVK-EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
V +L E + DE D+V LSGG +++L+ L+ K V LDE TS
Sbjct: 496 KVGLGDLAERL-----DEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATS 544
Query: 614 GMDPYSMRLTWQLIKKIKKGRIILLTTHS 642
+D + +QL+K+ ++ H
Sbjct: 545 ALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 22/228 (9%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A++ L+ + K +PG K A+ +V G +G NGAGK+T + +++G Y
Sbjct: 3 ALLQLKGIDKAFPGVK------ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG-IYT 55
Query: 1413 TDGTAFIF-GKDIR-SDPKAARRL-IGYCPQFDALLEYLTVQEHLEL-------YARIKG 1462
D + ++ GK++ + PK+++ IG Q L+ LT+ E++ L + RI
Sbjct: 56 RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDW 115
Query: 1463 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1522
Y D ++ +L +L + K LS G ++ + +A + + ++I+DEP+ +
Sbjct: 116 KKMYAEADKLLARL---NLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570
++ VI L + ++ +H + E +C + + GQ
Sbjct: 173 TDTETESLFRVIREL--KSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 585 LSGGMKRKLS----LGIALIGDSKVVILDEPTSGMDPYS-MRLTWQLIKKIKKGRIILLT 639
LSGG K + L +A + + ILDE G+DP L +++ + KG +++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 640 TH 641
TH
Sbjct: 138 TH 139
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 4e-05
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 560 LLESVVAEMVDEVG---LADKVNIV-VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615
LL+ + E+ + G V I LSGG K +L+L L+ + +++LDEPT+ +
Sbjct: 42 LLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101
Query: 616 DPYSMRLTWQLIKKIKK-GRIILLTTH 641
D S + L + +K+ ++L +H
Sbjct: 102 DLES--IEA-LEEALKEYPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-05
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528
++ + L + ++A++G G GK++ IS ++G + ++V IR +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSV 681
Query: 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA---------DKVN 579
PQ +F TVRE+ +L G E +D L D
Sbjct: 682 AYVPQVSWIF-NATVREN-----ILFGSDFE--SERYWRAIDVTALQHDLDLLPGRDLTE 733
Query: 580 IVVRA--LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW-QLIKKIKKGRII 636
I R +SGG K+++S+ A+ +S + I D+P S +D + + +K KG+
Sbjct: 734 IGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTR 793
Query: 637 LLTTHSMDEAEELGDRIAIMANGSLK 662
+L T+ + + DRI +++ G +K
Sbjct: 794 VLVTNQLHFLPLM-DRIILVSEGMIK 818
|
Length = 1495 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 1367 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE--EYPTDGTAFIFGK-D 1423
+R + + +L ++ G+ +G +GAGKTT L MI G + GK +
Sbjct: 390 RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
+ + +A Y P+F + T+ EHL A ++ + D +
Sbjct: 450 VPKNTVSALIPGEYEPEFGEV----TILEHLRSKTGDLNAAV-----EILNRAGLSDAVL 500
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+ +K S LS G K + +A + P ++++DE + +D + + IS L+ G
Sbjct: 501 YRRKFS-ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGI 559
Query: 1544 TAVILTTH 1551
T +++T
Sbjct: 560 TLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-05
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 17/153 (11%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
++ + S+ ++ G G LG NGAGK+T + +++GE P G + K I+
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIK------- 376
Query: 1433 RLIGYCPQFDALLEYLTVQEH-LELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSF 1490
+GY Q LE+L E L+ AR+ A ++ + + L F + +
Sbjct: 377 --LGYFAQHQ--LEFLRADESPLQHLARL---APQELEQKLRDYLGGFGFQGDKVTEETR 429
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
SGG K +L +A+ + P +++LDEP+ +D
Sbjct: 430 RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 5e-05
Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 75/213 (35%)
Query: 1354 IIY-LRNLRKVYPGGKR----------SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTT 1402
IY + + KV P K+ AK+ V LG NGAGK+T
Sbjct: 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGV---------------LGLNGAGKSTL 49
Query: 1403 LSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIK 1461
L +++G + +G A I+ +GY PQ L TV+E++E A +K
Sbjct: 50 LRIMAGVDKEFEGEAR-PAPGIK---------VGYLPQEPQLDPEKTVRENVEEGVAEVK 99
Query: 1462 GV--------AEYRMDDVVMEKLVE-----FDLLKHAK---------------------K 1487
A Y D + L +++ A
Sbjct: 100 AALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159
Query: 1488 PSFTLSGGNKRKLSVAIA--MIGDPPIVILDEP 1518
LSGG +R+ VA+ ++ P +++LDEP
Sbjct: 160 KVTKLSGGERRR--VALCRLLLEKPDMLLLDEP 190
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-05
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 34/147 (23%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 541
+AL+G NG GK+T + +++G + +G K A D+ R L PE
Sbjct: 348 IALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR---------AELDPEK 398
Query: 542 TVREHLEMFAVLKGVKEELLESVVAEMVDEVG------LAD------KVNIVVRALSGGM 589
TV ++L +G K+E+ MV+ L D + V+ALSGG
Sbjct: 399 TVMDNLA-----EG-KQEV-------MVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGE 445
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMD 616
+ +L L + S ++ILDEPT+ +D
Sbjct: 446 RNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 470 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
+ LT+ + L+G NGAGKST + ++ G + P G
Sbjct: 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 12/108 (11%)
Query: 1473 MEKLVEFDLLKHA---------KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
M++ VE+ L K A + ++LSGG +++L +A + P +++LDEP + +D
Sbjct: 129 MDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
PI+ + E+I+ L +Q T VI+ TH+M +A M G+L
Sbjct: 189 PISTGRIEELITEL--KQDYTVVIV-THNMQQAARCSDYTAFMYLGEL 233
|
Length = 260 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 48/228 (21%)
Query: 1375 AVHSLTFSVQAGECFGFLGTNGAGKT-TTLSMISGEEYPTDGTA--FIF-GKDIRS-DPK 1429
AV +++SV+ GE G +G +G+GK+ ++L+++ +YP A F G+D++ K
Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81
Query: 1430 AARRLIG-----------------YCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
R L+G Y F ++E + V + G + R +
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQ-IMEAIKVHQ--------GGNKKTRRQRAI 132
Query: 1473 MEKLVEFDLLKHAKKPS---------FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
DLL P LSGG +++ +A+A+ P ++I DEP+T +D
Sbjct: 133 -------DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ + E++ L ++ A++L TH + +I +M GQ+
Sbjct: 186 VTIQAQIIELLLELQ-QKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
Length = 326 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 44/197 (22%), Positives = 94/197 (47%), Gaps = 25/197 (12%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
+ L + Q+LA+ G G+GKS+ + M++G + P+ G G+ +
Sbjct: 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ISFS 492
Query: 532 PQYDILFPELTVREHLEMFAVLKGVKEELLESVV-AEMVDE--VGLADKVNIVVR----A 584
PQ + P T+++++ +F + E SV+ A ++E +K V+
Sbjct: 493 PQTSWIMPG-TIKDNI-IFGL--SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGIT 548
Query: 585 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHSM 643
LSGG + ++SL A+ D+ + +LD P + +D + + ++ + K+ + +L T +
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608
Query: 644 DEAEELGDRIAIMANGS 660
+ ++ D+I ++ G
Sbjct: 609 EHLKK-ADKILLLHEGV 624
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 37/188 (19%)
Query: 481 ILALLGHNGAGKSTTI-SMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFP 539
+ ++G NGAGK+T I ++ L TG+ K D IR+G V Q + F
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYAL----TGELPPNSKGGAHDPKLIREG-EVRAQVKLAFE 78
Query: 540 -----ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 594
+ T+ L + + + + +M SGG K S
Sbjct: 79 NANGKKYTITRSLAILENVIFCHQGESNWPLLDMRG-------------RCSGGEKVLAS 125
Query: 595 LGIAL------IGDSKVVILDEPTSGMDPYSMRLTW-QLIKKIKKGRI--ILLTTHSMDE 645
L I L + ++ LDEPT+ +D ++ + ++I++ K + +++ TH
Sbjct: 126 LIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD--- 182
Query: 646 AEELGDRI 653
EEL D
Sbjct: 183 -EELVDAA 189
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 54/184 (29%)
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 538
+++ ++G G+GK+T L + P G + D ++I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI------DGEDIL------------- 42
Query: 539 PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 598
E V + L V + SG ++ +L+L +A
Sbjct: 43 ----------------------------EEVLDQLLLIIVGGKKASGSGELRLRLALALA 74
Query: 599 LIGDSKVVILDEPTSGMDPYS-------MRLTWQLIKKIKKGRIILLTTHSMDEAEELGD 651
V+ILDE TS +D L L+ K +K ++LTT+ +
Sbjct: 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134
Query: 652 RIAI 655
R
Sbjct: 135 RRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 46/258 (17%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYPTDGTAFIF------ 1420
K+ D K + +++F+++ GE G LG +GAGK+ + ++ G ++Y I+
Sbjct: 8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67
Query: 1421 --------GKDIRSDPKAARRLIGYCPQFDALLEYLT----------VQEHLELYAR--- 1459
K P L F L + L +Q LY
Sbjct: 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTV 127
Query: 1460 IKGV------AEYRMDDVVME--KLVEFDLLKH-----AKKPSFTLSGGNKRKLSVAIAM 1506
+ V Y + V L+E L H A+ LSGG K+++ +A +
Sbjct: 128 LDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD----LSGGEKQRVVLARQL 183
Query: 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566
+P + + DEP+ +DP + + + G + ++LT+H + L + +
Sbjct: 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGIS-MVLTSHWPEVIEDLSDKAIWL 242
Query: 1567 VGGQLRCIGSPQHLKTRF 1584
G+++ G+P + F
Sbjct: 243 ENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 50/216 (23%), Positives = 106/216 (49%), Gaps = 11/216 (5%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGV 530
+ +T++ + + ++G GAGKS+ L + G+ ++ G NI + ++R + +
Sbjct: 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364
Query: 531 CPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-GLADKVNIVV----RA 584
PQ +LF ++R +L+ F+ EE+ ++ +A + V L DK++
Sbjct: 1365 IPQDPVLFSG-SLRMNLDPFSQYS--DEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 585 LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 644
LS G ++ + L AL+ +K+++LDE T+ +D + L I+ + +L H ++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 645 EAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680
+ R+ ++ G + G+ L Q G+ Y++
Sbjct: 1482 TIMDY-TRVIVLDKGEVAEFGAPSNLLQQRGIFYSM 1516
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 463 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG------KN 516
R +N + ++ E ++A++G G GKS+ +S L+ + G + G +
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ 707
Query: 517 ITADMDEIRKGLGVCPQYDILF----PELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 572
D +R+ +ILF E ++ LE A+L + E+L S + E
Sbjct: 708 AWIQNDSLRE--------NILFGKALNEKYYQQVLEACALLPDL--EILPSGDRTEIGEK 757
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI---KK 629
G VN LSGG K+++SL A+ ++ + + D+P S +D + + ++ + +
Sbjct: 758 G----VN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808
Query: 630 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ K + +L TH + ++ D I +M+ G + GS
Sbjct: 809 VLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 38/188 (20%)
Query: 1386 GECFGFLGTNGAGKTTTLSMISGEEYPTDG------------TAF-------IFGKDIRS 1426
G+ G +G NG GK+T L +++G+ P G F F K +
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARI--KGVAEYRMDDVVMEKLVEFDLLKH 1484
D K + PQ+ L+ + EL + +G + +D + + +++ ++ +
Sbjct: 86 DVKVIVK-----PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQ- 139
Query: 1485 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-MWEVISRLSTRQGK 1543
LSGG +++++A A+ D DEPS+ +D I +R +I L+ +
Sbjct: 140 -------LSGGELQRVAIAAALARDADFYFFDEPSSYLD-IKQRLNAARLIRELA--EDD 189
Query: 1544 TAVILTTH 1551
V++ H
Sbjct: 190 NYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 68/221 (30%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG-------- 1415
YP A+ ++ F+++ G+ G G G+GK+T LS+I ++G
Sbjct: 323 YPQTDHP----ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378
Query: 1416 ------------------TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELY 1457
T F+F SD A +G P DA Q+ +E
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLF-----SDTVANNIALG-RP--DA------TQQEIEHV 424
Query: 1458 ARIKGVAE--YRM----DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511
AR+ V + R+ D V E+ V LSGG K+++S+A A++ +
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGV-------------MLSGGQKQRISIARALLLNAE 471
Query: 1512 IVILDEPSTGMDPIAKRFMWEVISRLST-RQGKTAVILTTH 1551
I+ILD+ + +D R +++ L +G+T VI++ H
Sbjct: 472 ILILDDALSAVD---GRTEHQILHNLRQWGEGRT-VIISAH 508
|
Length = 569 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-04
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 48/172 (27%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527
++ L L I+ ++G NGAGKST M+ G P +G + G+ + A +D+ R
Sbjct: 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGETVKLAYVDQSRDA 396
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA--- 584
L P TV E ++ +D + L K + RA
Sbjct: 397 LD---------PNKTVWE------------------EISGGLDIIQLG-KREVPSRAYVG 428
Query: 585 ---------------LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
LSGG + ++ L L V++LDEPT+ +D ++R
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 1341 ERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKT 1400
E + LSG V+ LR + G + + + + + ++Q G+ +G +G+GK+
Sbjct: 469 EPSPRLSGYVE--------LRNITFGYSPLEPPL-IENFSLTLQPGQRVALVGGSGSGKS 519
Query: 1401 TTLSMISGEEYPTDGTAFIFGKDIRSDPKAA-RRLIGYCPQFDALLEYLTVQEHLELYAR 1459
T +++G P G G P+ + Q D L TV+++L L+
Sbjct: 520 TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ-DIFLFEGTVRDNLTLWDP 578
Query: 1460 IKGVAEYRM---------DDVVMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508
+ + + DV+ + +D L + LSGG +++L +A A++
Sbjct: 579 --TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA----NLSGGQRQRLEIARALVR 632
Query: 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
+P I+ILDE ++ +DP ++ + L R+G T +I
Sbjct: 633 NPSILILDEATSALDPETEK---IIDDNLR-RRGCTCII 667
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL--- 1434
++ + G+ +G G GK++ L I GE +G K+ A R
Sbjct: 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78
Query: 1435 --IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-- 1490
+ Y Q LL TV+E++ + Y+ + DLL +
Sbjct: 79 YSVAYAAQKPWLLN-ATVEENITFGSPFNK-QRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 1491 ---TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD-PIAKRFMWEVISRLSTRQGKTAV 1546
LSGG ++++ VA A+ + IV LD+P + +D ++ M E I + + K +
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF-LQDDKRTL 195
Query: 1547 ILTTHSM 1553
+L TH +
Sbjct: 196 VLVTHKL 202
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-04
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 30/193 (15%)
Query: 481 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 540
++A++G G GK++ IS ++G +PP + ++V IR + PQ +F
Sbjct: 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIF-N 692
Query: 541 LTVREHLEMFAVLKGVKEELLESVVAEMVD----------EVGLADKVNIVVRALSGGMK 590
TVR+++ + + E V A D E+G VNI SGG K
Sbjct: 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIG-ERGVNI-----SGGQK 746
Query: 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW-QLIKKIKKGRIILLTTHSMDEAEEL 649
+++S+ A+ +S V I D+P S +D + R + + IK +G+ +L T+ + ++
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV 806
Query: 650 GDRIAIMANGSLK 662
DRI ++ G +K
Sbjct: 807 -DRIILVHEGMIK 818
|
Length = 1622 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 1491 TLSGGNKRKLSVAIAMIGDPP--IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
TLSGG +++ +A + +PP + ILDEPSTG+ + EVI L VIL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL--IDLGNTVIL 144
Query: 1549 TTHS 1552
H+
Sbjct: 145 IEHN 148
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-04
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 574 LADKVNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
L DK +V + LSGG K+++S+ A+I + K++ILDE TS +D S L + I
Sbjct: 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
Query: 630 IK--KGRIILLTTHSM 643
+K + RI ++ H +
Sbjct: 625 LKGNENRITIIIAHRL 640
|
Length = 1466 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 22/191 (11%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGL--IPPTTGDALVFGKNITADMDEIRK 526
+ L L + ++ A++G NG+GKST + L G T G GK++ E R
Sbjct: 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA 76
Query: 527 GLGV--CPQYDILFPELT-----------VREHLEMFAVLKGVKEELLESVVA--EMVDE 571
G G+ QY + P ++ VR + + + ++L+E +A +M ++
Sbjct: 77 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPED 136
Query: 572 VGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK 631
+ L VN+ SGG K++ + + + ++ ILDE SG+D ++++ + ++
Sbjct: 137 L-LTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR 192
Query: 632 KG-RIILLTTH 641
G R ++ TH
Sbjct: 193 DGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 6e-04
Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 20/265 (7%)
Query: 1327 SDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAG 1386
+ +DL + +E NR +SG I ++ Y R +H L+F V
Sbjct: 1207 GNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY----RPGLPPVLHGLSFFVSPS 1262
Query: 1387 ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALL 1445
E G +G GAGK++ L+ + G I D+ + RR++ PQ L
Sbjct: 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 1446 EYLTVQEHLELYAR------IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499
TV+ +++ ++ + + + DV+ F L + S G ++
Sbjct: 1323 SG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRN--PFGLDAEVSEGGENFSVGQRQL 1379
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT-THSMNEAQA 1558
LS+A A++ I++LDE + +D +I R + K+ +L H +N
Sbjct: 1380 LSLARALLRRSKILVLDEATASVDVRTD----SLIQRTIREEFKSCTMLVIAHRLNTIID 1435
Query: 1559 LCTRIGIMVGGQLRCIGSPQHLKTR 1583
C +I ++ GQ+ SPQ L +R
Sbjct: 1436 -CDKILVLSSGQVLEYDSPQELLSR 1459
|
Length = 1495 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 40/161 (24%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 507 TGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
+G L+ G +I ++ ++R + Q +LF +++ E+++ F +E++ +
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIK-FGKEDATREDVKRACK 1333
Query: 566 AEMVDEV--GLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619
+DE L +K + V ++LSGG K+++++ AL+ + K+++LDE TS +D S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Query: 620 MRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMAN 658
+L + I IK + I+ H + + D+I + N
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 48/192 (25%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGE----------EYPTD-------GTAF------I 1419
+ G+ G LG NG GKTT + ++SGE E D GT +
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155
Query: 1420 FGKDIRSDPKAARRLIGYCPQF-DALLEYL--TVQEHLELYARIKGVAEYRMDDVVMEKL 1476
+ +I+ K PQ+ D + + V+E L K V E D V+E+L
Sbjct: 156 YNGEIKVVHK---------PQYVDLIPKVFKGKVRELL------KKVDERGKLDEVVERL 200
Query: 1477 VEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF-MWEVIS 1535
L + LSGG +++++A A++ D DEP++ +D I +R + +I
Sbjct: 201 ---GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD-IRQRLNVARLIR 256
Query: 1536 RLSTRQGKTAVI 1547
L+ +GK ++
Sbjct: 257 ELA--EGKYVLV 266
|
Length = 590 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 0.001
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 47/169 (27%)
Query: 484 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 543
+LG NGAGKST + ++ G+ G+A I +G PQ L PE TV
Sbjct: 38 VLGLNGAGKSTLLRIMAGVDKEFEGEA-RPAPGIK---------VGYLPQEPQLDPEKTV 87
Query: 544 REHLEM-FAVLKGVKEELLESVVAEMVDEVG----LAD-------------------KVN 579
RE++E A +K + + A + LA ++
Sbjct: 88 RENVEEGVAEVKAALDR-FNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLE 146
Query: 580 I------------VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
I V LSGG +R+++L L+ +++LDEPT+ +D
Sbjct: 147 IAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1548
LSGG K+++S+A A+I +P I+ILDE ++ +D ++ + + I+ L + + +I+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636
|
Length = 1466 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
KV + ++ SV G+ LG G+GK+T L + + ++G + A
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW------------AE 720
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK------ 1486
R I Y PQ A + TV+ ++ + R+ D V +E DL +
Sbjct: 721 RSIAYVPQ-QAWIMNATVRGNILFFDEED---AARLADAVRVSQLEADLAQLGGGLETEI 776
Query: 1487 -KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKT 1544
+ LSGG K ++S+A A+ + + +LD+P + +D + +R + E L GKT
Sbjct: 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--LGALAGKT 834
Query: 1545 AVILTTH 1551
V L TH
Sbjct: 835 RV-LATH 840
|
Length = 1560 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 1371 DAKVAVHSLT---FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
D+K +L+ V G +G+ G GKT+ +S + GE P + +
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------- 677
Query: 1428 PKAARRLIGYCPQ----FDALLEYLTVQEHL--------ELYARIKGVAEYRMDDVVMEK 1475
R + Y PQ F+A TV++++ E Y R V + D ++
Sbjct: 678 ----RGTVAYVPQVSWIFNA-----TVRDNILFGSPFDPERYERAIDVTALQHD---LDL 725
Query: 1476 LVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVIS 1535
L DL + ++ +SGG K+++S+A A+ + + I D+P + +D R +V
Sbjct: 726 LPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR---QVFD 781
Query: 1536 RLSTR--QGKTAVILT 1549
+ +GKT V++T
Sbjct: 782 KCIKDELRGKTRVLVT 797
|
Length = 1622 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.003
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
LSGG ++++ +A+A++ P ++I DEP+T +D + + +++ L ++ ++ TH
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ-QELNMGLLFITH 215
Query: 1552 SMNEAQALCTRIGIMVGGQLRCI---------GSPQHLKTR 1583
+++ + L R+ +M G RC+ +P H T+
Sbjct: 216 NLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPTHPYTQ 254
|
Length = 529 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 1371 DAKVAVHSLT---FSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
D+K + +L+ + G +G G GKT+ +S + GE + ++ +
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI------- 677
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV-----MEKLVEFDLL 1482
R + Y PQ + TV+E++ + + +R DV ++ L DL
Sbjct: 678 ----RGSVAYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLT 732
Query: 1483 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
+ ++ +SGG K+++S+A A+ + I I D+P + +D +++ + +G
Sbjct: 733 EIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK-DELKG 790
Query: 1543 KTAVILT 1549
KT V++T
Sbjct: 791 KTRVLVT 797
|
Length = 1495 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 26/218 (11%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--------TGDALVFGKNITA- 519
+ L L + ++ ALLG NGAGKST + L G + TGD + G+ + A
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 520 DMDEIRKGLGVCPQY-DILFPELTVREHLEM----FAVLKGVKEELLESVVAEMVDEVGL 574
D + + V PQ F + RE + + A G + + + G
Sbjct: 77 DAPRLARLRAVLPQAAQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135
Query: 575 ADKVNIVVRALSGGMKRKLSLGIAL---------IGDSKVVILDEPTSGMD-PYSMRLTW 624
V V LSGG ++ L + ++LDEPT+ +D + RL
Sbjct: 136 TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD 195
Query: 625 QLIKKIKKGRI-ILLTTHSMDEAEELGDRIAIMANGSL 661
+ + + + +L H + A DRIA++A+G++
Sbjct: 196 TVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233
|
Length = 272 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 47/260 (18%)
Query: 1302 WKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLR 1361
W+ T RL + + E+ +D + R+ + I L NL
Sbjct: 352 WRATLLRLAE---------FRQALEAAQMDTEKPARTG---RRIDFDDNADHGITLENLS 399
Query: 1362 KVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1421
P G+ + L F V+ GE G +GAGKT+ L ++G +P +G
Sbjct: 400 LRTPDGQ-----TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-WP-------WG 446
Query: 1422 KDIRSDPKAARRLIGYCPQFDALLEYL---TVQEHLELYARIKGVAEYRMDDVVMEKLVE 1478
S P + L + PQ YL T++E L Y A D ++ L +
Sbjct: 447 SGRISMPADSALL--FLPQ----RPYLPQGTLREAL-CYPNA---APDFSDAELVAVLHK 496
Query: 1479 FDL------LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
L L + LSGG +++L+ A ++ P V LDE ++ +D + +++
Sbjct: 497 VGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ 556
Query: 1533 VISRLSTRQGKTAVILTTHS 1552
++ VI H
Sbjct: 557 LLKEELPD---ATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1492 LSGGNKRKLSVAIAM----IGDPPIVILDEPSTGMDPI-AKRFMWEVISRLSTRQGKTAV 1546
LSGG K ++A+ + + P+ ILDE G+DP + ++ L V
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL---VKGAQV 134
Query: 1547 ILTTH 1551
I+ TH
Sbjct: 135 IVITH 139
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 40/172 (23%), Positives = 56/172 (32%), Gaps = 32/172 (18%)
Query: 1393 GTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR--RLIGYCPQFDALLEYLTV 1450
G NGAGKTT + + Y G K DPK R + V
Sbjct: 29 GQNGAGKTTIIEALK---YALTGELPPNSKGGAHDPKLIREGEVRAQ------------V 73
Query: 1451 QEHLELYARIKGVAEYRM---DDVVMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAI- 1504
+ E K + ++V+ E + LL SGG K S+ I
Sbjct: 74 KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRG----RCSGGEKVLASLIIR 129
Query: 1505 -----AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
+ I+ LDEP+T +D I Q +I+ TH
Sbjct: 130 LALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1723 | |||
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-216 Score=2184.54 Aligned_cols=1540 Identities=32% Similarity=0.530 Sum_probs=1168.8
Q ss_pred eeccCcccccc-----ccCCCeeEEEEEecC------CCCceEEEEEecccccccCCCcccccc---cCCCCCCcccccC
Q 000284 21 HLYGTCSQVKD-----CLNPKIKGAVVFHDQ------GPELFDYSIRLNHTWAFSGFPDVKTIM---DTNGPYLNDLELG 86 (1723)
Q Consensus 21 ~~~~~~~~~~~-----~~~~~~~~~VvF~~~------~p~~~~Y~iR~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~g 86 (1723)
+++.+++.+.+ -.++++||||+|++. .|.+++|+||||.+. .|+++... ..+||+....
T Consensus 526 ~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~----~~~t~~~~~~~w~~g~~~~~~--- 598 (2272)
T TIGR01257 526 ESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDV----VEKTNKIKDRYWDSGPRADPV--- 598 (2272)
T ss_pred ecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccc----cCcchhhccccccCCCCCCcc---
Confidence 44555544222 345679999999764 368899999999752 23333221 2246654221
Q ss_pred CCCcCCccchhhhchHHHHHHHHHHHHHhhhcCCccccccccCCCCCCCCCcccCCCCccccCCcceeEeccCCCccCch
Q 000284 87 VNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVPFPTREYTDD 166 (1723)
Q Consensus 87 ~~~~~~~~Y~~~GFl~LQ~~id~aii~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~~d 166 (1723)
.+.+|+++||++||++||+|||+...+. . ....+++++||+|+|.+|
T Consensus 599 ----~~~~Y~~~GFl~lQ~ai~~aii~~~~~~----~-------------------------~~~~v~~q~~P~P~y~~d 645 (2272)
T TIGR01257 599 ----EDFRYIWGGFAYLQDMVEQGITRSQMQA----E-------------------------PPVGIYLQQMPYPCFVDD 645 (2272)
T ss_pred ----ccccHHHhhHHHHHHHHHHHHHHhhcCC----C-------------------------cccceeeeeCCCCCeecc
Confidence 1248999999999999999999753211 0 012467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccc
Q 000284 167 EFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITAC-TMDSLF 245 (1723)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~iV~EKe~~lke~m~~mGl~~~~~wlsw~i~~~~~~~i~~~ii~~~-~~~~~~ 245 (1723)
.|...+..++|++++++|+|+++.+++.||.|||+|+||+||||||++++||+|||+.+++.+++++++++++ ....+|
T Consensus 646 ~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~~~~~ 725 (2272)
T TIGR01257 646 SFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRIL 725 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcee
Confidence 9999999999999999999999999999999999999999999999999999999999998888877776654 456799
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhc--cCCCchhHHhHHHhhhchhHHHHH
Q 000284 246 KYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGAFFPYYTV--NDEAVPMVLKVIASLLSPTAFALG 323 (1723)
Q Consensus 246 ~~s~~~~~f~~~~l~~~s~i~~~~~iS~fF~~~~~a~~~~~l~~~~~~~p~~~~--~~~~~~~~~~~~~~l~~~~~~~~g 323 (1723)
++|+++++|+++++|++++|+||||+|+||+|+++|+++++++||+.++|+++. ..+..+...++++||+||+||++|
T Consensus 726 ~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g 805 (2272)
T TIGR01257 726 HYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFG 805 (2272)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998642 344556678999999999999999
Q ss_pred HHHHHHHhhcccCccccccccCC---CCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccccCcccc
Q 000284 324 SVNFADYERAHVGLRWSNMWRAS---SGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSV 400 (1723)
Q Consensus 324 ~~~~~~~e~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~d~~ly~~l~~yld~v~p~~~G~~~p~~f~~~~~~w~~~~~ 400 (1723)
+..++.+|.++.|++|+|++.++ ++++++.+++||++|+++|++|+||+|+|+||+||+++||||||+++||+++..
T Consensus 806 ~~~i~~~e~~~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~ 885 (2272)
T TIGR01257 806 TEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEG 885 (2272)
T ss_pred HHHHHHHhhhCCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCcc
Confidence 99999999999999999998643 457899999999999999999999999999999999999999999999987532
Q ss_pred cccccchhhHHhhhhhhhhhhhhhhcc-cCchhhhhhhhcccccccCcceEEEEeEEEEecCcCCccceeeeeeEEEeCC
Q 000284 401 IKHHVSSAEVKINKKLSKEKECAFALD-ACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYEN 479 (1723)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~G 479 (1723)
........... .+...++..+....+ .....+|+ ++.+ ....|+++||+|.|++ +++.||+|+||++++|
T Consensus 886 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~-----~~~~-~~~~L~I~nLsK~y~~--~~k~aL~~lsl~I~~G 956 (2272)
T TIGR01257 886 CSTREERALEK-TEPLTEEMEDPEHPEGINDSFFER-----ELPG-LVPGVCVKNLVKIFEP--SGRPAVDRLNITFYEN 956 (2272)
T ss_pred ccccccccccc-cccccccccccccccccccccccc-----ccCC-CCceEEEEeEEEEecC--CCceEEEeeEEEEcCC
Confidence 10000000000 000000000000000 00001111 1111 1258999999999953 2357999999999999
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH
Q 000284 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE 559 (1723)
Q Consensus 480 ei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~ 559 (1723)
|+++|+||||||||||+++|+|+++|++|+|+++|+++..+..++|+.+|||||++.+++.+||+||+.++++++|.+.+
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999877777889999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEE
Q 000284 560 LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLT 639 (1723)
Q Consensus 560 ~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~ 639 (1723)
+.+++++++++.+||.++.++++++|||||||||+||+||+++|+||||||||+||||.+|+.+|++|+++++|+|||++
T Consensus 1037 ~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIlt 1116 (2272)
T TIGR01257 1037 EAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMS 1116 (2272)
T ss_pred HHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecCC--------------------------------
Q 000284 640 THSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP-------------------------------- 687 (1723)
Q Consensus 640 TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~~-------------------------------- 687 (1723)
||+|++++.+||||++|++|+++|.|++.+||++||.||+++++++..
T Consensus 1117 THdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1196 (2272)
T TIGR01257 1117 THHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEIT 1196 (2272)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEeccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999986531
Q ss_pred -------ChhhHHHHHHhhCCCceEEeeeCcEEEEEecCCCc--chHHHHHHHHHHhhhhccccccccccccccCCCeeE
Q 000284 688 -------DASAAADIVYRHIPSALCVSEVGTEITFKLPLASS--SSFESMFREIESCIRKSVSKVEADATEDTDYLGIES 758 (1723)
Q Consensus 688 -------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lp~~~~--~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~ 758 (1723)
+.+.+.+++++|+|++++.++.+.+++|.+|.+.. ..|+.+|++||+.. +++||.+
T Consensus 1197 ~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~---------------~~lgi~s 1261 (2272)
T TIGR01257 1197 PEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETL---------------ADLGLSS 1261 (2272)
T ss_pred ccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhH---------------hhCCCce
Confidence 23456788999999999999999999999999875 46999999999753 4799999
Q ss_pred EEecCCCHHHHHHHHhcCCCcchh--hhhhccccccc--cc--cccccCCCCcccccc-ccccCCcccccceeeeeecch
Q 000284 759 FGISVTTLEEVFLRVAGCNLDESE--CISQRNNLVTL--DY--VSAESDDQAPKRISN-CKLFGNYKWVFGFIVTVVQRA 831 (1723)
Q Consensus 759 ~~is~ttLEevfl~~~~~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 831 (1723)
|++|+|||||||||++++...+.. ...+....... .. .......+.+..... ....... ... ....
T Consensus 1262 ygis~tTLEeVFlkv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~ 1334 (2272)
T TIGR01257 1262 FGISDTPLEEIFLKVTEDADSGSLFAGGAQQKRENANLRHPCSGPTEKAGQTPQASHTCSPGQPAA-HPE------GQPP 1334 (2272)
T ss_pred EEeecCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc-ccc------cccc
Confidence 999999999999999875432110 00000000000 00 000000000000000 0000000 000 0000
Q ss_pred hhhhhHHhhhhhhhhcccccccccccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhccCC-CCCC
Q 000284 832 CTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPH-PDML 910 (1723)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~all~KR~~~~~R~~~~~~~~lllP~~~~~~~l~~~~~~~~-~~~~ 910 (1723)
. . ..........+..+++||++||++||+++++||||.+++|+++|++|+++++++....+. .+.|
T Consensus 1335 ~-----------~--~~~~~~~~~tg~~L~~qQf~All~KR~~~~~Rd~k~~~~qillPi~fv~lal~~~~~~~~~~~~p 1401 (2272)
T TIGR01257 1335 P-----------E--PEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSIIIPPFGEYP 1401 (2272)
T ss_pred c-----------c--ccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 0 0 000001123467899999999999999999999999999999999999999988877553 3567
Q ss_pred ccccccccCCcccCCC--------------------CCCCCccc--------c--cCchh-----hhhhhhhh-ccCccc
Q 000284 911 SVTFTTSNFNPLLSGG--------------------GGGGPIPF--------D--LSWPI-----ANEVSKYI-QGGWIQ 954 (1723)
Q Consensus 911 ~~~l~~~~~~~~~~~~--------------------~~~~~~~~--------~--~~~~~-----~~~~~~~~-~~~~~~ 954 (1723)
++++++..|....... ++.+.... . ...+. ...+...+ ...|..
T Consensus 1402 ~l~Ls~~~Y~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1481 (2272)
T TIGR01257 1402 ALTLHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPCGNSTPWKTPSVSPNITHLFQKQKWTA 1481 (2272)
T ss_pred CeecchhhccCcceeccccccccccccchhhhhhcccccccccccccccccccccccccccccchhHHHHHHHhhccccc
Confidence 7888777663221100 00000000 0 00000 00000000 000110
Q ss_pred ccccCCCCCC--ChHHHHHHHHHhcCCCCc-------------cchhchhHHHHHhhhhcc-----------cccccEEE
Q 000284 955 RFKQSSYRFP--NAEKALADAVDAAGPTLG-------------PVLLSMSEYLMSSFNESY-----------QSRYGAIV 1008 (1723)
Q Consensus 955 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~-----------~~~~g~~~ 1008 (1723)
......+.|. .......++....+.... ....++++|+...++... ..|||++.
T Consensus 1482 ~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~n~sdyll~~~~~~~~~~~~~~~~~~~~ry~~~s 1561 (2272)
T TIGR01257 1482 AHPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGIS 1561 (2272)
T ss_pred cccccccccccccccccccccccccccCCCcccccccchhhhhhcccchHHHHhhhhhhhhccccccccccccccccccc
Confidence 0000000000 000000001111000000 012345677665443211 24555442
Q ss_pred eeccC------------------------------------------CCCceeEEEEeCCcCCChHHHHHHHHHHHHHHH
Q 000284 1009 MDDQN------------------------------------------DDGSLGFTVLHNSSCQHAGPTFINVMNTAILRL 1046 (1723)
Q Consensus 1009 ~~~~~------------------------------------------~~~~~~~~~~~N~~~~hs~p~~ln~l~nailr~ 1046 (1723)
.+... ..+...+++|||++++|++|+++|+++||++|.
T Consensus 1562 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vwfNn~~~Hs~p~~lN~l~NaiLr~ 1641 (2272)
T TIGR01257 1562 IGGKLPAIPITGEALVGFLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIKVWFNNKGWHALVSFLNVAHNAILRA 1641 (2272)
T ss_pred cccccccccccchhhhhhhhhcccccccccccccccccchhhhhhhccccCcceEEEEcCCcccHHHHHHHHHHHHHHHH
Confidence 22100 011235689999999999999999999999999
Q ss_pred hcCC----CcceEEEEeecCCcchhhhhhh---chhhhhHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHhCCchH
Q 000284 1047 ATGN----RNMTIRTRNHPLPTTQSQQLQR---HDLDAFSVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVL 1119 (1723)
Q Consensus 1047 ~~~~----~~~~I~~~n~Plp~~~~~~~~~---~~~~~~~~~i~i~~~~s~i~a~f~~~~V~ER~~k~k~lq~vsGv~~~ 1119 (1723)
..++ .+.+|++.|||+|.+..+.... .......++++++++|+|+|++|++++|+||++|+||+|++||+++.
T Consensus 1642 ~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~ 1721 (2272)
T TIGR01257 1642 SLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPT 1721 (2272)
T ss_pred hcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcH
Confidence 7542 3578999999999876442211 11223456888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHH
Q 000284 1120 SYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFF 1199 (1723)
Q Consensus 1120 ~YW~s~~i~D~i~~li~~~~~iii~~~f~~~~~~~~~~~~~~~lllllyG~a~i~~~Yl~Sf~F~~~~~a~~~~~~~~~~ 1199 (1723)
+||+++|+||+++|+++++++++++++|+.+.|.+..++..+++++++||+|++|++|++||+|+++++|+..+.+++++
T Consensus 1722 ~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~ 1801 (2272)
T TIGR01257 1722 TYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLF 1801 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccchhhhhhhHHHHHHHhhc------ccCCCCCCccccccchhhHHH
Q 000284 1200 TGLILMVISFIMGLLEA---TRSANSLLKNFFRLSPGFCFADGLASLALLRQG------MKDKTSDGVFDWNVTSASICY 1270 (1723)
Q Consensus 1200 ~g~~~~i~~~il~~~~~---~~~~~~~l~~~f~l~P~~~l~~gl~~l~~~~~~------~~~~~~~~~~~~~~~g~~i~~ 1270 (1723)
+|++..++.+++..+.. ....+..++++|+++|.||+++|++++...... .......++++|+..|.+++|
T Consensus 1802 ~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ll~ 1881 (2272)
T TIGR01257 1802 IGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSANPFQWDLIGKNLVA 1881 (2272)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHHhhcccccCCccchhhccHHHHH
Confidence 99999988888876532 344577889999999999999999988754321 112223467899999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhhHHhhhhccccccccCCCCCCCcccccCCCCCCcCCCCcchhhHHHhhhcccCCC
Q 000284 1271 LGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSV 1350 (1723)
Q Consensus 1271 l~~~~i~~~ll~l~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~dV~~Er~rv~~~~~ 1350 (1723)
|++++++|+++++++|+.... . .|... .. .+ ...+||+||++||+||.+...
T Consensus 1882 m~~~~iv~flLl~~ie~~~~~-------~-~~~~~--------~~-~~-----------~~~~eD~DV~~Er~rV~~~~~ 1933 (2272)
T TIGR01257 1882 MAVEGVVYFLLTLLIQHHFFL-------S-RWIAE--------PA-KE-----------PIFDEDDDVAEERQRIISGGN 1933 (2272)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-------h-hhccc--------cC-cC-----------cCCCchhHHHHHHHHHhccCC
Confidence 999999999999999963210 0 01000 00 00 013689999999999987666
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHH
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~ 1430 (1723)
.+.+|+++||+|+|+++ ++.||+|+||+|++|||+||+||||||||||+|||+|+++|++|+|+++|+++.....+
T Consensus 1934 ~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT----SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred CCceEEEEEEEEEECCC----CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHH
Confidence 67789999999999631 35699999999999999999999999999999999999999999999999999765556
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
.+++||||||++.+++.+|++|||.++++++|+++++.+++++++++.++|.+++++++++|||||||||+||+||+++|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P 2089 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP 2089 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999999999999887777778889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCeEEE
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~~~~~ 1590 (1723)
+||||||||+||||.+|+.+|+.|+++++ +| +|||+|||+|+|++++||||++|++|+++|.|+++++++++|.+|.+
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g-~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l 2167 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIR-EG-RAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEE
Confidence 99999999999999999999999999864 44 68999999999999999999999999999999999999999999998
Q ss_pred EEeecCCCcc---cHHHHHHHHHhccccCCcchhhhhhhhhhhhccccccccCCCceeeechhHHHHHHHHhhhccccce
Q 000284 1591 EVKPTEVSSV---DLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERI 1667 (1723)
Q Consensus 1591 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1667 (1723)
+++.+..... +.+.+..++...+..... .+.. ...-.+...+. .+ .+.+..+.+ ...+..|
T Consensus 2168 ~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~-----~e~~----~~~l~~~i~~~-----~~-~~if~~L~~-~k~~l~I 2231 (2272)
T TIGR01257 2168 TMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQ-----RERH----YNMLQFQVSSS-----SL-ARIFQLLIS-HKDSLLI 2231 (2272)
T ss_pred EEEEcCcchhhhhHHHHHHHHHhhcCcccee-----eccc----cceEEEEeCcc-----cH-HHHHHHHHh-cCCCCCe
Confidence 8876432211 122333344433221100 0000 00000111100 11 222222222 1235678
Q ss_pred eEeEecCCChhhHHHHhhcccccccCC
Q 000284 1668 KTLISSSSSPDRIFGEQLSEQLVRDGT 1694 (1723)
Q Consensus 1668 ~~~~~~~~sl~~vf~~~t~~~~~~~~~ 1694 (1723)
.++.+.++||||||+++++++-.+++.
T Consensus 2232 ~dysvsqtSLE~VFl~l~~~q~~~~~~ 2258 (2272)
T TIGR01257 2232 EEYSVTQTTLDQVFVNFAKQQTETYDL 2258 (2272)
T ss_pred EEEEcCCCCHHHHHHHHhccccccCCC
Confidence 999999999999999999998775533
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=886.06 Aligned_cols=852 Identities=34% Similarity=0.515 Sum_probs=615.5
Q ss_pred HHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecCCChhhHHHHHHhhCCCceEEe
Q 000284 628 KKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDASAAADIVYRHIPSALCVS 707 (1723)
Q Consensus 628 ~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 707 (1723)
++.|++|||++ +|||++|++|+++ ++.+||+++|.||+++++. .....+.+++|++++..
T Consensus 2 ~~~k~~R~i~~-----------~Dri~i~s~g~l~---s~~~lk~~~g~gy~l~l~~------~~~~~~~~~~p~~~~~~ 61 (885)
T KOG0059|consen 2 ERRKEGRTIIL-----------GDRIVIMSHGKLK---SSLFLKRKLGSGYHLTLVL------QVTLFIQQHIPDARLVE 61 (885)
T ss_pred cccccCCEEEE-----------ecceeheeCCeec---cchHHHHhhCCCceEEeHH------HHHHHHHhhCccceecc
Confidence 45678999999 9999999999999 9999999999999999987 67788999999999887
Q ss_pred eeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCCHHHHHHHHhcCCCcchhhhhhc
Q 000284 708 EVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQR 787 (1723)
Q Consensus 708 ~~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~is~ttLEevfl~~~~~~~~~~~~~~~~ 787 (1723)
.. +..+.+|......+ .+..+ .++.+|+++.||+||||+++.+.......
T Consensus 62 ~~--~~~~~lp~~~~~~~--~~~~l---------------------~~~~~~~~~~t~l~~vfl~~~~~~~~~~~----- 111 (885)
T KOG0059|consen 62 CP--KLVYLLPLKYRREF--LFRGL---------------------DLIASFGVSLTTLEEVFLKLGGESDSLEN----- 111 (885)
T ss_pred cc--cccccCChhccccc--hhhhh---------------------hcccccccccccHHHHHhhcccccccccc-----
Confidence 77 88899998765443 11111 11788999999999999999864321110
Q ss_pred cccccccccccccCCCCccccccccccCCcccccceeeeeecchhhhhhHHhhhhhhhhcccccccccccchhHHHHHHH
Q 000284 788 NNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKA 867 (1723)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a 867 (1723)
+. .. .. ..+...+.+|+.+
T Consensus 112 -----------------~~-----~~---------------~~------------------------~~~~~~~~~~~~~ 130 (885)
T KOG0059|consen 112 -----------------DS-----TE---------------DQ------------------------VSGPAKAYTQFQA 130 (885)
T ss_pred -----------------cc-----cc---------------cc------------------------cchhHHhhhhHHH
Confidence 00 00 00 0245678899999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccCCcccCCCCCCCCcccccCchhhhhhhhh
Q 000284 868 LFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKY 947 (1723)
Q Consensus 868 ll~KR~~~~~R~~~~~~~~lllP~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1723)
+++||++..+|+|+.++.++.+|.+++.+++... .+ ..++++..+...... ..++.|... .....
T Consensus 131 ~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~ 195 (885)
T KOG0059|consen 131 LLRKRFLPLRRNWRLFLAQLLLPSIFVVLALVFS--DP-----HLTLSPSLYGALYTN--YSGEINTEE------FLSVL 195 (885)
T ss_pred HHHHhhhhhhhhhhhHHHHHhhHHHHHHHHHhcc--Cc-----cccCCccccceeeec--CCccCCccH------HHHhh
Confidence 9999999999999999999999999988887665 11 111111111000000 000111100 00000
Q ss_pred hccCcccccccCCCCCCChHHHHHHHHHhcCCCCccchhchhHHHHH---hhhh-cccccccEEEee----ccCCCCcee
Q 000284 948 IQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMS---SFNE-SYQSRYGAIVMD----DQNDDGSLG 1019 (1723)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~---~~~~-~~~~~~g~~~~~----~~~~~~~~~ 1019 (1723)
..... ..+...++.. ..+. .+...++....+ .........
T Consensus 196 ~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (885)
T KOG0059|consen 196 EANGK--------------------------------GRNLSLALNNINTEVDNFTVDNWTESSSKNKGDMLGRDLKDVR 243 (885)
T ss_pred hcccc--------------------------------cchhhhhhhcchhhheeeeecceeccccccchhhhcCccccce
Confidence 00000 0000000000 0000 000000011111 012223456
Q ss_pred EEEEeCCcCCChHHHHHHHHHHHHHHHhcCCCcceEEEEeecCCcchhhhhhhchhhhhHHHHHHHHHHHHhhhHhhhHH
Q 000284 1020 FTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPASFAVAI 1099 (1723)
Q Consensus 1020 ~~~~~N~~~~hs~p~~ln~l~nailr~~~~~~~~~I~~~n~Plp~~~~~~~~~~~~~~~~~~i~i~~~~s~i~a~f~~~~ 1099 (1723)
..+|+|++.+|+.|..+|+.+|++++...... |.+.++|+|.+..+...... ..+..+.++.+.++++++.++++.
T Consensus 244 v~~~~n~k~~~~~~~~~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 319 (885)
T KOG0059|consen 244 VSVLFNNKGLHTLPFLLGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLL-ADLLGALFLLFVFLLLFSVFLLSL 319 (885)
T ss_pred EEEeeehhhhhhHHHhcchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhh-hHHHHHHHHHHHHHHHhHHHHhHH
Confidence 78999999999999999999999998875433 89999999987765432221 446677888999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 000284 1100 VKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCAIILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCL 1179 (1723)
Q Consensus 1100 V~ER~~k~k~lq~vsGv~~~~YW~s~~i~D~i~~li~~~~~iii~~~f~~~~~~~~~~~~~~~lllllyG~a~i~~~Yl~ 1179 (1723)
+.||..++||+|.++|+++.+||+++++||++.|++++++..+++.+|+ +........+++++++|+++.+|++|++
T Consensus 320 i~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~---~~~~~~~~~~~~~~~l~~~s~i~l~y~~ 396 (885)
T KOG0059|consen 320 ILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG---FFAGNNTVIILLLLLLYIRSAIPLTYIL 396 (885)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee---cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 6667778889999999999999999999
Q ss_pred hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc-chhhhhhhHHHHHHHh-hcccC--
Q 000284 1180 TFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEA---TRSANSLLKNFFRLS-PGFCFADGLASLALLR-QGMKD-- 1252 (1723)
Q Consensus 1180 Sf~F~~~~~a~~~~~~~~~~~g~~~~i~~~il~~~~~---~~~~~~~l~~~f~l~-P~~~l~~gl~~l~~~~-~~~~~-- 1252 (1723)
|+.|+...++.....+.++++|+...++.+++..... .......+...|.++ |.++++.+........ .++..
T Consensus 397 s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 476 (885)
T KOG0059|consen 397 SFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEV 476 (885)
T ss_pred HHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999999999999888866555555443322 122334455556655 8888888877765331 11110
Q ss_pred ----CC-CCCcccccc--chhhHHHHHHHHHHHHHHHHHHHhccccchhhhHHhhhhccccccccCCCCCCCcccccCCC
Q 000284 1253 ----KT-SDGVFDWNV--TSASICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSS 1325 (1723)
Q Consensus 1253 ----~~-~~~~~~~~~--~g~~i~~l~~~~i~~~ll~l~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1325 (1723)
.. ....+.|.. .+....++..+++.++++.+.++... .+..... .+...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~-------------~~~~~~~-------~~~~~---- 532 (885)
T KOG0059|consen 477 LGNDESFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFLLIFVPF-------------KRRMRAL-------TQNML---- 532 (885)
T ss_pred hcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------ccccccc-------ccccc----
Confidence 01 111344655 34445666666666665555443210 0000000 00000
Q ss_pred CCCcCCCCcchhhHHHhhhcccCCCC---cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHH
Q 000284 1326 ESDTLDLNEDIDVQVERNRVLSGSVD---NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTT 1402 (1723)
Q Consensus 1326 ~~~~~~~~eD~dV~~Er~rv~~~~~~---~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTl 1402 (1723)
........||.||.+||+++...... ...+.++||+|.|+... . |++++||.|++|||+|++|+|||||||+
T Consensus 533 ~~~~~~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~----~-Av~~ls~~V~~gecfgLLG~NGAGKtT~ 607 (885)
T KOG0059|consen 533 KGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKD----G-AVRGLSFAVPPGECFGLLGVNGAGKTTT 607 (885)
T ss_pred CCCcCcchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecchh----h-hhcceEEEecCCceEEEecCCCCCchhh
Confidence 00011236789999999888654332 36899999999997521 2 9999999999999999999999999999
Q ss_pred HHHHhCCCCCCceEEEEcCeeCCCC--hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcC
Q 000284 1403 LSMISGEEYPTDGTAFIFGKDIRSD--PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD 1480 (1723)
Q Consensus 1403 l~~l~G~~~p~~G~i~i~G~~i~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~ 1480 (1723)
++||+|+.+|++|+++++|+++... ..+.++.||||||++++++.+|+||||.+|++++|+++.++++.++++++.++
T Consensus 608 f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~ 687 (885)
T KOG0059|consen 608 FKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVG 687 (885)
T ss_pred HHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcC
Confidence 9999999999999999999999874 34589999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHc
Q 000284 1481 LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALC 1560 (1723)
Q Consensus 1481 l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~ 1560 (1723)
|.++++++++.|||||||||++|.|++++|++++|||||+||||.+||.+|++|++++ ++|+ +||+|||+|||||++|
T Consensus 688 L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~-k~g~-aiiLTSHsMeE~EaLC 765 (885)
T KOG0059|consen 688 LGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR-KNGK-AIILTSHSMEEAEALC 765 (885)
T ss_pred ChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH-hcCC-EEEEEcCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999986 4554 8999999999999999
Q ss_pred CEEEEEECCEEEEecChhHHHhhcCCeEEEEEeecCCCcccHHHHHHHHHhccccCCcchhhhhhhhhhhhccccccccC
Q 000284 1561 TRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSE 1640 (1723)
Q Consensus 1561 drv~im~~G~l~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1640 (1723)
||++||.+|+++|.|++||||++||.+|.++++.++..+. +.+.+.+++.+..-....+. . ..-.+...
T Consensus 766 tR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~--~~v~~~~~~~~p~a~~~~~~-----~----~~~~~~ip 834 (885)
T KOG0059|consen 766 TRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEV--SEVEKLLQNRFPGAVLKERH-----A----GLLAFEIP 834 (885)
T ss_pred hhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCccc--chHHHHHHHhCCCcchhhhh-----h----ceEEEEcc
Confidence 9999999999999999999999999999999988753332 45555566554433211110 0 00001111
Q ss_pred CCceeeechhHHHHHHHHhhhccccceeEeEecCCChhhHHHHhhccccc
Q 000284 1641 NATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLV 1690 (1723)
Q Consensus 1641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~vf~~~t~~~~~ 1690 (1723)
.. +.......+..+... ...-++.+....+.+|||||++...++-.
T Consensus 835 ~~---~~~~~~~vF~~le~~-~~~~~i~dyslsq~tLe~VFi~~a~~q~~ 880 (885)
T KOG0059|consen 835 KD---EVVSLSEVFLALEKA-KESFGIEDYSLSQTTLEDVFLILAKTQED 880 (885)
T ss_pred cc---hhhHHHHHHHHHHHH-HHhcCHHHHHHHHhhHHHHHHHHhccccc
Confidence 00 000001222222222 24557888999999999999999876544
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-78 Score=776.32 Aligned_cols=224 Identities=28% Similarity=0.453 Sum_probs=196.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..|+++||+++|++++ +..+|+|+||+|++||.++|+|||||||||++++|.+++.|++|+|+|+|.|++. +.+++|.
T Consensus 349 g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred cceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 4699999999999875 5789999999999999999999999999999999999999999999999999975 8889999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCccccc----ccCCCChhHHHHHHH
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-------LADKVNI----VVRALSGGMKRKLSL 595 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~-------l~~~~~~----~~~~LSgGqkqrl~l 595 (1723)
+||+|.|+|+||. .|++||+.++ .+. .-+++++++.+..+ |++..+. +.-+||||||||++|
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G-----~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYG-----KPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcC-----CCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHH
Confidence 9999999999996 5999999984 221 22334444444332 3333333 334699999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
||||+.+|+|||||||||+||+.+++.+.++|++.++|||.|+++|++.++.. ||+|++|++|++++.|++++|-+.-|
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G 579 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGG 579 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999988 99999999999999999999988776
Q ss_pred CcEEE
Q 000284 676 VGYTL 680 (1723)
Q Consensus 676 ~gy~l 680 (1723)
..+.+
T Consensus 580 ~Y~~l 584 (1228)
T KOG0055|consen 580 IYSSL 584 (1228)
T ss_pred hHHHH
Confidence 65543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-76 Score=811.89 Aligned_cols=832 Identities=19% Similarity=0.227 Sum_probs=508.6
Q ss_pred CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEccccCCccHHHHhcceEEEccCCCCCC
Q 000284 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI----PPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFP 539 (1723)
Q Consensus 464 ~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~----~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~ 539 (1723)
..+.+|+|+|+.+++||+++|+||||||||||+|+|+|+. +|++|+|.++|.++.......|+.+||++|++.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 3467999999999999999999999999999999999996 579999999999875333345677999999999999
Q ss_pred CCCHHHHHHHHHHhcC-------CCHHHHHHH-HHHHHHHcCCCccccccc-----CCCChhHHHHHHHHHHHhcCCcEe
Q 000284 540 ELTVREHLEMFAVLKG-------VKEELLESV-VAEMVDEVGLADKVNIVV-----RALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 540 ~lTv~e~l~~~~~~~g-------~~~~~~~~~-v~~~l~~~~l~~~~~~~~-----~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
.+||+|+|.|.+.++. .++++..++ ++++++.+||.+..|+++ +.|||||||||+||+||+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 9999999999877652 334443333 467899999998777654 679999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCH-HHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC-CcEEEEE
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSM-DEAEELGDRIAIMANGSLKCCGSSLFLKHQYG-VGYTLTL 682 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~-~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g-~gy~l~~ 682 (1723)
+|||||+|||+.++..+.+.|+++. .|+|||+++|+. +++..++|||++|++|+++..|++.+++..|. .||. +
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~--~ 309 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFK--C 309 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCC--C
Confidence 9999999999999999999999985 389999999996 78999999999999999999999998876653 3442 1
Q ss_pred EecCCChhhHHHHHHhhC-CCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEE-
Q 000284 683 VKSAPDASAAADIVYRHI-PSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFG- 760 (1723)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~- 760 (1723)
+......+++..-. |..... ..+.+. ..|.. ...+.+.+++-+...+ .. ++ +..+.
T Consensus 310 ----p~~~n~aDfl~~~~~~~~~~~-~~~~e~--~~~~~-~~~~~~~~~~s~~~~~-----~~-------~~--~~~~~~ 367 (1394)
T TIGR00956 310 ----PDRQTTADFLTSLTSPAERQI-KPGYEK--KVPRT-PQEFETYWRNSPEYAQ-----LM-------KE--IDEYLD 367 (1394)
T ss_pred ----CCCCChHHHHHhccChhhhhc-cccccc--cCCCC-HHHHHHHHHcCHHHHH-----HH-------HH--HHHHhh
Confidence 11111222222211 100000 000000 01110 1112111111000000 00 00 00000
Q ss_pred -ecCCCHHHHHHHHhcCCCcchhhhhhccccccccccccccCCCCccccccccccCCcccccceeeeeecchhhhhhHHh
Q 000284 761 -ISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAV 839 (1723)
Q Consensus 761 -is~ttLEevfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1723)
.....-.+.+... . ...+ + +..
T Consensus 368 ~~~~~~~~~~~~~~--------------~-----------~~~~-~-~~~------------------------------ 390 (1394)
T TIGR00956 368 RCSESDTKEAYRES--------------H-----------VAKQ-S-KRT------------------------------ 390 (1394)
T ss_pred hccchhhHHHHHHH--------------H-----------Hhhh-c-ccc------------------------------
Confidence 0000000000000 0 0000 0 000
Q ss_pred hhhhhhhcccccccccccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHHHhccCCCCCCcccccccc
Q 000284 840 LGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIF-LLVGLLFLKLKPHPDMLSVTFTTSN 918 (1723)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~q~~all~KR~~~~~R~~~~~~~~lllP~~~-~~~~l~~~~~~~~~~~~~~~l~~~~ 918 (1723)
.....-...+++|++.++++.+...+||+..+...++..+++ +++|.++...... +
T Consensus 391 ------------~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~--~--------- 447 (1394)
T TIGR00956 391 ------------RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN--T--------- 447 (1394)
T ss_pred ------------cCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC--c---------
Confidence 000012245899999999999999999999998877765443 2333333211000 0
Q ss_pred CCcccCCCCCCCCcccccCchhhhhhhhhhccCcccccccCCCCCCChHHHHHHHHHhcCCCCccchhchhHHHHHhhhh
Q 000284 919 FNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNE 998 (1723)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 998 (1723)
..+
T Consensus 448 -------------------------------------------------~~~---------------------------- 450 (1394)
T TIGR00956 448 -------------------------------------------------SDF---------------------------- 450 (1394)
T ss_pred -------------------------------------------------hhH----------------------------
Confidence 000
Q ss_pred cccccccEEEeeccCCCCceeEEEEeCCcCCChHHHHHHHHHHHHHHHhcCCCcceEEEEeecCCcchhhhhhhchhhhh
Q 000284 999 SYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAF 1078 (1723)
Q Consensus 999 ~~~~~~g~~~~~~~~~~~~~~~~~~~N~~~~hs~p~~ln~l~nailr~~~~~~~~~I~~~n~Plp~~~~~~~~~~~~~~~ 1078 (1723)
.. + ...+
T Consensus 451 --~~---------------------------------------------------------------------r--~g~l 457 (1394)
T TIGR00956 451 --YS---------------------------------------------------------------------R--GGAL 457 (1394)
T ss_pred --HH---------------------------------------------------------------------H--HHHH
Confidence 00 0 0000
Q ss_pred HHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccccc
Q 000284 1079 SVSIIISIAFSFIPASFAVAIVKEREVKAKQQQLISGV-SVLSYWTSTYIWDFISFLFPSSCAIILF-YIFGLDQFVGRG 1156 (1723)
Q Consensus 1079 ~~~i~i~~~~s~i~a~f~~~~V~ER~~k~k~lq~vsGv-~~~~YW~s~~i~D~i~~li~~~~~iii~-~~f~~~~~~~~~ 1156 (1723)
..++. ..++....-+.....||..-.|| .-+|. ++.+|.+|..+.|+...++.+++..++. +..++. .+.+
T Consensus 458 f~~~~---~~~~~~~~~i~~~~~eR~i~~re--~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~--~~~~ 530 (1394)
T TIGR00956 458 FFAIL---FNAFSSLLEIASMYEARPIVEKH--RKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFR--RTAG 530 (1394)
T ss_pred HHHHH---HHHHHHHHHHHHHHhcCcceeee--ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCc--ccHH
Confidence 00000 01111111112223455444332 23454 7899999999999987665554444433 333332 1233
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000284 1157 CLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLV----HFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSP 1232 (1723)
Q Consensus 1157 ~~~~~~lllllyG~a~i~~~Yl~Sf~F~~~~~a~~~~~~~----~~~~g~~~~i~~~il~~~~~~~~~~~~l~~~f~l~P 1232 (1723)
.++..++++++..+++..+..+++.++.+...|.....++ .++.|+ +-........++|+..+.|
T Consensus 531 ~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf-----------~i~~~~mp~~~~W~~yisp 599 (1394)
T TIGR00956 531 RFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF-----------AIPRPSMLGWSKWIYYVNP 599 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc-----------ccChhhccHHHHHHHHcCH
Confidence 4455555555666666667777777777766554332221 112221 1111223334455555555
Q ss_pred hhhhhhhHHHHHHHhhc--cc-----------------CC----------CCC--------CccccccchhhHHHHHHHH
Q 000284 1233 GFCFADGLASLALLRQG--MK-----------------DK----------TSD--------GVFDWNVTSASICYLGCES 1275 (1723)
Q Consensus 1233 ~~~l~~gl~~l~~~~~~--~~-----------------~~----------~~~--------~~~~~~~~g~~i~~l~~~~ 1275 (1723)
..--..+++.-...... +. .+ ... -.+.++..+.++.++++-.
T Consensus 600 ~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~ 679 (1394)
T TIGR00956 600 LAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFT 679 (1394)
T ss_pred HHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHH
Confidence 32222222221110000 00 00 000 0112233445555666555
Q ss_pred HHHHHHHH-HHHhccccchhhhHHhhhhccccccccCCCCCCCcccccCCCCCCc---CC-CCcchhhHHHhhhcccCCC
Q 000284 1276 ICYFLLTL-GLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDT---LD-LNEDIDVQVERNRVLSGSV 1350 (1723)
Q Consensus 1276 i~~~ll~l-~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~eD~dV~~Er~rv~~~~~ 1350 (1723)
++|.++.+ .+++....... ..... +++.............+....+..+... .+ ..|..++. +..+... ..
T Consensus 680 v~f~~~~~l~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~-~~ 755 (1394)
T TIGR00956 680 VFFFFVYILLTEFNKGAKQK-GEILV-FRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVN-DEKDMEK-ES 755 (1394)
T ss_pred HHHHHHHHHHHHhccccCCC-CceEe-eccccccchhhcccccccccccccccccCCCCcccccccccc-ccccccc-cC
Confidence 55555443 34442110000 00000 0000000000000000000000000000 00 00000100 0000000 01
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRSD 1427 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~---p~~G~i~i~G~~i~~~ 1427 (1723)
+..+++++||++.|+.++ +++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 756 ~~~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~- 832 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS- 832 (1394)
T ss_pred CCceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-
Confidence 234689999999996321 34679999999999999999999999999999999999997 789999999999842
Q ss_pred hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcC---CChhhHHHHHHHHHHHcCCccccCCCCC----CCChhHHHHH
Q 000284 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG---VAEYRMDDVVMEKLVEFDLLKHAKKPSF----TLSGGNKRKL 1500 (1723)
Q Consensus 1428 ~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g---~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LSgG~kqrl 1500 (1723)
..|+.+|||||++.+++.+||+|||.+.+.++. .++++..++++++++.++|.+.+|+.++ .|||||||||
T Consensus 833 --~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 --SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred --hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH
Confidence 467889999999988899999999999887653 3444556778999999999988898887 7999999999
Q ss_pred HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHH-HHHHcCEEEEEECC-EEEEecCh
Q 000284 1501 SVAIAMIGDPP-IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNE-AQALCTRIGIMVGG-QLRCIGSP 1577 (1723)
Q Consensus 1501 ~iA~al~~~p~-vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e-~~~l~drv~im~~G-~l~~~g~~ 1577 (1723)
+||+||+.+|+ ||+|||||+|||+.++..+++.|+++++ +| +|||+|||+++. +.+.|||+++|++| ++++.|++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g-~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HG-QAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cC-CEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99999999997 9999999999999999999999999964 45 589999999986 45679999999997 99999987
Q ss_pred h
Q 000284 1578 Q 1578 (1723)
Q Consensus 1578 ~ 1578 (1723)
.
T Consensus 989 ~ 989 (1394)
T TIGR00956 989 G 989 (1394)
T ss_pred c
Confidence 3
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-77 Score=722.93 Aligned_cols=225 Identities=27% Similarity=0.467 Sum_probs=201.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----cceEEEccccCCc----
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT----TGDALVFGKNITA---- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~----~G~i~i~g~~i~~---- 519 (1723)
..++++||++.|....+...||+|+||++.+||++||+|.+||||||+.+.|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 37999999999987655567999999999999999999999999999999999999987 8999999998743
Q ss_pred cHHHHh-cceEEEccCC--CCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCcccc--cccCCCChhHHHHH
Q 000284 520 DMDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLADKVN--IVVRALSGGMKRKL 593 (1723)
Q Consensus 520 ~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~~~~~--~~~~~LSgGqkqrl 593 (1723)
.+..+| +.|+|+||++ .|.|-+|+.+.+.-...+++ .+++++++++.++|+.+||++... +++++||||||||+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 344555 7799999997 46777999999976665554 558889999999999999997655 49999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
.||+||+.+|++||+||||++||+..+.++.++|++++ .|.++|+||||+..+..+||||+||.+|++++.|+++++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999986 4999999999999999999999999999999998865544
Q ss_pred h
Q 000284 672 H 672 (1723)
Q Consensus 672 ~ 672 (1723)
+
T Consensus 244 ~ 244 (539)
T COG1123 244 S 244 (539)
T ss_pred h
Confidence 3
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-76 Score=763.60 Aligned_cols=229 Identities=25% Similarity=0.351 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEcCCCCc-----cCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC
Q 000284 1353 AIIYLRNLRKVYPGGKR-----SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~-----~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~ 1427 (1723)
++|+++||+|.|+.... .+.+.+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|.++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 47999999999963100 0124699999999999999999999999999999999999999999999999988642
Q ss_pred -h---HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHH
Q 000284 1428 -P---KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1428 -~---~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqr 1499 (1723)
. ...+++|||+||++ .+++.+||.||+.+....++. ...+..+++.++|+.+||. +..++++++||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 1 23467899999996 588899999999876555554 2334556788999999996 67899999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
|+|||||+.+|++|||||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|++|++++.|++++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g-~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG-IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999965444 689999999999999999999999999999999999
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 551 i~~ 553 (623)
T PRK10261 551 VFE 553 (623)
T ss_pred Hhc
Confidence 864
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-75 Score=741.41 Aligned_cols=227 Identities=30% Similarity=0.414 Sum_probs=193.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEc-Cee---CCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF-GKD---IRSD-- 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~-G~~---i~~~-- 1427 (1723)
+|+++||+|+|++.. .+.+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 279 ~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 688999999995310 023469999999999999999999999999999999999999999999996 643 2211
Q ss_pred --hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-----ccCCCCCCCChhHHHHH
Q 000284 1428 --PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1428 --~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgG~kqrl 1500 (1723)
....+++|||+||++.+++.+||+||+.+.... +.+....++++.++++.++|.+ ..++++.+|||||||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv 436 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV 436 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence 123456799999999899999999999875433 3333334456788999999964 57899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++.| .|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 437 ~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME-QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999864444 6899999999999999999999999999999999887
Q ss_pred Hhh
Q 000284 1581 KTR 1583 (1723)
Q Consensus 1581 ~~~ 1583 (1723)
.++
T Consensus 516 ~~~ 518 (520)
T TIGR03269 516 VEE 518 (520)
T ss_pred Hhh
Confidence 654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-75 Score=740.98 Aligned_cols=214 Identities=23% Similarity=0.405 Sum_probs=191.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEccccCCcc-H-HH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITAD-M-DE 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p--~~G~i~i~g~~i~~~-~-~~ 523 (1723)
..|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... . ..
T Consensus 4 ~~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 79 (506)
T PRK13549 4 YLLEMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT 79 (506)
T ss_pred ceEEEeeeEEEeCC----eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 46999999999953 4699999999999999999999999999999999999996 899999999988542 2 23
Q ss_pred HhcceEEEccCCCCCCCCCHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000284 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLK--G-VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--g-~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
.|+.+||+||++.+++.+||+||+.+..... + .+.++.+++++++++.+|+.+..++++++||||||||++|||||+
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998865432 2 244455678899999999998889999999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeec
Confidence 9999999999999999999999999999985 5899999999999999999999999999987544
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-74 Score=735.74 Aligned_cols=227 Identities=22% Similarity=0.393 Sum_probs=193.5
Q ss_pred eEEEEeEEEEcCCCCc-----cCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-
Q 000284 1354 IIYLRNLRKVYPGGKR-----SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD- 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~-----~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~- 1427 (1723)
+|+++|+++.|+.+.. .+.+.+++++||+|++||++||+||||||||||+|+|+|++ |++|+|+++|+++...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 5778889998852100 01356999999999999999999999999999999999998 4999999999988542
Q ss_pred hH---HhccceEEEecCC--CCCCCCCHHHHHHHHHHHcC--CChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHH
Q 000284 1428 PK---AARRLIGYCPQFD--ALLEYLTVQEHLELYARIKG--VAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1428 ~~---~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqr 1499 (1723)
.. ..++++||+||++ .+++.+||+||+.+....++ .+..+.++++.++++.+++. +..++++.+||||||||
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 21 2356799999996 47888999999987654332 34444456788999999997 56899999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
|+|||||+.+|++|||||||+|||+.+++.++++|++++++.| +|||++|||++++..+|||+++|++|++++.|++++
T Consensus 434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ-LAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCER 512 (529)
T ss_pred HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999965434 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 513 ~~~ 515 (529)
T PRK15134 513 VFA 515 (529)
T ss_pred Hhc
Confidence 754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-72 Score=772.44 Aligned_cols=825 Identities=20% Similarity=0.246 Sum_probs=500.4
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEccccCCccHHHHhcceEEEccCCCCCCCC
Q 000284 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 541 (1723)
Q Consensus 465 ~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~l 541 (1723)
++.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..|+.+|||+|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--VPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh--cccceeEEecccccCCCcC
Confidence 356999999999999999999999999999999999999998 99999999987432 1267899999999999999
Q ss_pred CHHHHHHHHHHhcCCC----------HHHH------------------------HHHHHHHHHHcCCCccc-----cccc
Q 000284 542 TVREHLEMFAVLKGVK----------EELL------------------------ESVVAEMVDEVGLADKV-----NIVV 582 (1723)
Q Consensus 542 Tv~e~l~~~~~~~g~~----------~~~~------------------------~~~v~~~l~~~~l~~~~-----~~~~ 582 (1723)
||+|+|.|.++.++.. +++. +..++++++.+||.+.. |+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999988766421 1110 11357799999998765 4566
Q ss_pred CCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCH-HHHHhhcCEEEEEeCC
Q 000284 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSM-DEAEELGDRIAIMANG 659 (1723)
Q Consensus 583 ~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~-~e~~~l~dri~il~~G 659 (1723)
+.|||||||||+||+||+++|++++|||||+|||+.++.++.+.|+++. .|+|+|+++|+. +++..++|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 8999999999999999999999999999999999999999999999985 489999999996 6899999999999999
Q ss_pred EEEEecCHHHHHhhhC-CcEEEEEEecCCChhhHHHHHHhhCCCceEEeeeCcEE-EEEecCC--CcchHHHHHHHHHHh
Q 000284 660 SLKCCGSSLFLKHQYG-VGYTLTLVKSAPDASAAADIVYRHIPSALCVSEVGTEI-TFKLPLA--SSSSFESMFREIESC 735 (1723)
Q Consensus 660 ~l~~~Gs~~~Lk~~~g-~gy~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~lp~~--~~~~~~~l~~~le~~ 735 (1723)
+++..|+..+++..|. .||. + |......+++..-.... +..... .-..|.. ....+.+.+++-+..
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~--c----P~~~n~ADFl~~v~s~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~ 484 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFK--C----PERKGTADFLQEVTSKK----DQEQYWADRNKPYRYISVSEFAERFKSFHVG 484 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCC--C----CCCCChHHHHHHhcCch----hhhhhhhccCCccccCCHHHHHHHHHhcHHH
Confidence 9999999998876553 4552 1 11112223333211100 000000 0001110 011122211111000
Q ss_pred hhhccccccccccccccCCCeeEEEecCCCHHHHHHHHhcCCCcchhhhhhccccccccccccccCCCCccccccccccC
Q 000284 736 IRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFG 815 (1723)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~i~~~~is~ttLEevfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1723)
.+ ..+|+ . ...++.. ..... . + .
T Consensus 485 ~~---------------------------~~~~~----~-~~~~~~~-------------------~~~~~-~---~-~- 507 (1470)
T PLN03140 485 MQ---------------------------LENEL----S-VPFDKSQ-------------------SHKAA-L---V-F- 507 (1470)
T ss_pred HH---------------------------HHHHH----h-hhhhhhh-------------------ccccc-c---c-C-
Confidence 00 00000 0 0000000 00000 0 0 0
Q ss_pred CcccccceeeeeecchhhhhhHHhhhhhhhhcccccccccccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-
Q 000284 816 NYKWVFGFIVTVVQRACTLIVAAVLGFLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFL- 894 (1723)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~all~KR~~~~~R~~~~~~~~lllP~~~~- 894 (1723)
..-...++.|+++++++.+...+||+..+++.++.-+++.
T Consensus 508 ---------------------------------------~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~al 548 (1470)
T PLN03140 508 ---------------------------------------SKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548 (1470)
T ss_pred ---------------------------------------CCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 0011346889999999999999999998887776655432
Q ss_pred HHHHHHHhccCCCCCCccccccccCCcccCCCCCCCCcccccCchhhhhhhhhhccCcccccccCCCCCCChHHHHHHHH
Q 000284 895 LVGLLFLKLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAV 974 (1723)
Q Consensus 895 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 974 (1723)
++|.++.....+. + +.
T Consensus 549 i~GsvF~~~~~~~--~------------------------------------------------------~~-------- 564 (1470)
T PLN03140 549 IASTVFLRTEMHT--R------------------------------------------------------NE-------- 564 (1470)
T ss_pred HHHHHHhcCCCCC--C------------------------------------------------------cc--------
Confidence 3344433211000 0 00
Q ss_pred HhcCCCCccchhchhHHHHHhhhhcccccccEEEeeccCCCCceeEEEEeCCcCCChHHHHHHHHHHHHHHHhcCCCcce
Q 000284 975 DAAGPTLGPVLLSMSEYLMSSFNESYQSRYGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMT 1054 (1723)
Q Consensus 975 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~N~~~~hs~p~~ln~l~nailr~~~~~~~~~ 1054 (1723)
.++ +
T Consensus 565 ---------------------------------------~~~--------------------~----------------- 568 (1470)
T PLN03140 565 ---------------------------------------EDG--------------------A----------------- 568 (1470)
T ss_pred ---------------------------------------hhH--------------------H-----------------
Confidence 000 0
Q ss_pred EEEEeecCCcchhhhhhhchhhhhHHHHHH--HHHHHHhhhHhhhHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH
Q 000284 1055 IRTRNHPLPTTQSQQLQRHDLDAFSVSIII--SIAFSFIPASFAVAIVKEREVKAKQQQLISG-VSVLSYWTSTYIWDFI 1131 (1723)
Q Consensus 1055 I~~~n~Plp~~~~~~~~~~~~~~~~~~i~i--~~~~s~i~a~f~~~~V~ER~~k~k~lq~vsG-v~~~~YW~s~~i~D~i 1131 (1723)
.....+..++.+ ..+++-++..+ .||..=.||-.. + .++++|.++..+.|+.
T Consensus 569 ------------------~~~g~lff~~l~~~~~~~~~l~~~~-----~~r~vf~ker~~--~~Y~~~ay~la~~l~~iP 623 (1470)
T PLN03140 569 ------------------LYIGALLFSMIINMFNGFAELALMI-----QRLPVFYKQRDL--LFHPPWTFTLPTFLLGIP 623 (1470)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHhhhc--cCcCHHHHHHHHHHHHHH
Confidence 000000000000 01111122222 333332232222 3 4789999999999998
Q ss_pred HHHHHHHHHH-HHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHH----HHHHHHHHHH
Q 000284 1132 SFLFPSSCAI-ILFYIFGLDQFVGRGCLLPTVLIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLV----HFFTGLILMV 1206 (1723)
Q Consensus 1132 ~~li~~~~~i-ii~~~f~~~~~~~~~~~~~~~lllllyG~a~i~~~Yl~Sf~F~~~~~a~~~~~~~----~~~~g~~~~i 1206 (1723)
..++.+++.. ++++..+... +.+.++..++++++..++...+..+++.++.+...|.....++ .++.|+
T Consensus 624 ~~~i~~~if~~I~Y~m~Gl~~--~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf---- 697 (1470)
T PLN03140 624 ISIIESVVWVVITYYSIGFAP--EASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGF---- 697 (1470)
T ss_pred HHHHHHHHHHhHHhhhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccc----
Confidence 8776665544 4444444332 2334555555555666666666677777766655544332211 111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHHHHHHhhcccCC------CC--------CCccc-cccchhhHHHH
Q 000284 1207 ISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLASLALLRQGMKDK------TS--------DGVFD-WNVTSASICYL 1271 (1723)
Q Consensus 1207 ~~~il~~~~~~~~~~~~l~~~f~l~P~~~l~~gl~~l~~~~~~~~~~------~~--------~~~~~-~~~~g~~i~~l 1271 (1723)
+-........++|+..+.|..--..+++.-.......... .. .+... ....+.++..|
T Consensus 698 -------~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL 770 (1470)
T PLN03140 698 -------ILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGAL 770 (1470)
T ss_pred -------eechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHH
Confidence 1112233344556665666322222222211100000000 00 00000 01122333444
Q ss_pred HHHHHHHHHH-HHHHHhccccchhhhHHhhhhccccccccCCCC-CC-----Cccccc---CC---CCCCcC-CCCcchh
Q 000284 1272 GCESICYFLL-TLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPS-SY-----LEPLLQ---SS---SESDTL-DLNEDID 1337 (1723)
Q Consensus 1272 ~~~~i~~~ll-~l~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~---~~---~~~~~~-~~~eD~d 1337 (1723)
++-.++|.++ .+.+++....... ....++.......... .. .+.... .. +..... ....+..
T Consensus 771 ~~~~v~f~~l~~l~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1470)
T PLN03140 771 LGFTILFNVLFTLALTYLNPLGKK----QAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS 846 (1470)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCC----Cccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 4444444443 2334432110000 0000000000000000 00 000000 00 000000 0000000
Q ss_pred hHHHhhhccc--C---CCCcceEEEEeEEEEcCCCC-------ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHH
Q 000284 1338 VQVERNRVLS--G---SVDNAIIYLRNLRKVYPGGK-------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSM 1405 (1723)
Q Consensus 1338 V~~Er~rv~~--~---~~~~~~l~v~~l~k~y~~~~-------~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~ 1405 (1723)
.. +...+.. + ......+..+||++..+... ..+++.+|+|+|+.+++||+++|+||||||||||+++
T Consensus 847 ~~-~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~ 925 (1470)
T PLN03140 847 LE-AANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDV 925 (1470)
T ss_pred cc-cccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHH
Confidence 00 0000000 0 01123589999998875321 0134579999999999999999999999999999999
Q ss_pred HhCCCCC--CceEEEEcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc---CCChhhHHHHHHHHHHHcC
Q 000284 1406 ISGEEYP--TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK---GVAEYRMDDVVMEKLVEFD 1480 (1723)
Q Consensus 1406 l~G~~~p--~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~~~~~l~~~~ 1480 (1723)
|+|..++ .+|+|.++|++... ...++.+|||+|++.+++.+||+|+|.+.+.++ ..+.++..+.++++++.++
T Consensus 926 LaG~~~~g~~~G~I~inG~~~~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 926 LAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred HcCCCCCCcccceEEECCccCCh--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 9999763 78999999987642 345677999999999999999999999887654 2333445567889999999
Q ss_pred CccccCCCC-----CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHH-
Q 000284 1481 LLKHAKKPS-----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN- 1554 (1723)
Q Consensus 1481 l~~~~~~~~-----~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~- 1554 (1723)
|.+.+++.+ +.|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++++ +| +|||+|||+++
T Consensus 1004 L~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g-~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1004 LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG-RTVVCTIHQPSI 1081 (1470)
T ss_pred ChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCCCH
Confidence 998888886 58999999999999999999999999999999999999999999999964 45 58999999998
Q ss_pred HHHHHcCEEEEEEC-CEEEEecCh----hHHHhhc
Q 000284 1555 EAQALCTRIGIMVG-GQLRCIGSP----QHLKTRF 1584 (1723)
Q Consensus 1555 e~~~l~drv~im~~-G~l~~~g~~----~~l~~~~ 1584 (1723)
++..+|||+++|++ |++++.|++ +++.+-|
T Consensus 1082 ~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF 1116 (1470)
T PLN03140 1082 DIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYF 1116 (1470)
T ss_pred HHHHhCCEEEEEcCCCEEEEECCcccccccHHHHH
Confidence 57789999999996 899999986 3455444
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=736.81 Aligned_cols=215 Identities=32% Similarity=0.462 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH-HHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r 525 (1723)
+.++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ... ..+
T Consensus 4 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 79 (510)
T PRK09700 4 PYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79 (510)
T ss_pred ceEEEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHH
Confidence 46999999999953 469999999999999999999999999999999999999999999999998854 222 235
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH----hcCC---CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHH
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAV----LKGV---KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 598 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~----~~g~---~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~a 598 (1723)
+++||+||++.+++.+||+||+.+... ..+. +.++.++++.++++.+||.+..++++++|||||||||+||+|
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 679999999999999999999986432 1222 234556788999999999988999999999999999999999
Q ss_pred HhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecC
Q 000284 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 599 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs 666 (1723)
|+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999986 48999999999999999999999999999876554
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-74 Score=729.34 Aligned_cols=214 Identities=25% Similarity=0.431 Sum_probs=191.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc--HHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD--MDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~--~~~~r 525 (1723)
+.|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 3 ~~i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (501)
T PRK10762 3 ALLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE 78 (501)
T ss_pred ceEEEeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 36999999999953 4699999999999999999999999999999999999999999999999987532 22345
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
+.+||+||++.+++.+||+||+.++.... ..+.++.+++++++++.+||.+..++++++||||||||++||+||+.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred CCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc
Confidence 78999999999999999999998864332 12344556778999999999988999999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999985 4889999999999999999999999999987544
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-73 Score=725.57 Aligned_cols=211 Identities=24% Similarity=0.418 Sum_probs=186.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEccccCCc-cH-HHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNITA-DM-DEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p--~~G~i~i~g~~i~~-~~-~~~r 525 (1723)
++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. +. ...+
T Consensus 2 l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 2 LEMKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77 (500)
T ss_pred EEEEeEEEEeCC----eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 789999999953 4699999999999999999999999999999999999997 79999999998854 22 2345
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc--C--CCHHHHHHHHHHHHHHcCCCccc-ccccCCCChhHHHHHHHHHHHh
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLK--G--VKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--g--~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
+.+||+||++.+++.+||+||+.+..... + .+.++.+++++++++.+|+.+.. ++++++|||||||||+||+||+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 78999999999999999999998764332 1 33445567889999999998764 6789999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEe
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCC 664 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~ 664 (1723)
.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999985 589999999999999999999999999998643
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-73 Score=722.09 Aligned_cols=212 Identities=25% Similarity=0.456 Sum_probs=190.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHH-Hh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE-IR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~-~r 525 (1723)
+.|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .... .+
T Consensus 10 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 10 PLLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred ceEEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 47999999999953 469999999999999999999999999999999999999999999999998854 2223 34
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+||+||++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 5799999999999999999999875321 234457789999999999889999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~ 667 (1723)
|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|++
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKT 224 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCh
Confidence 99999999999999999999999985 589999999999999999999999999999877764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-73 Score=721.65 Aligned_cols=212 Identities=27% Similarity=0.461 Sum_probs=190.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 525 (1723)
+.++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|
T Consensus 3 ~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (501)
T PRK11288 3 PYLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78 (501)
T ss_pred ceEEEeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHh
Confidence 46999999999953 469999999999999999999999999999999999999999999999998753 234467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH--hcC-CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAV--LKG-VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~--~~g-~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
+++||+||++.+++.+||.||+.+... ..+ .+..+.++++.++++.+||.+..++++.+||||||||++|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 889999999999999999999987532 123 34455667899999999999888999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEE
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKC 663 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~ 663 (1723)
|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999985 58999999999999999999999999999864
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=713.15 Aligned_cols=211 Identities=26% Similarity=0.399 Sum_probs=187.2
Q ss_pred EEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHhcceE
Q 000284 452 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRKGLG 529 (1723)
Q Consensus 452 i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~~ig 529 (1723)
++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....++.+|
T Consensus 1 ~~nl~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 1 MSNISKSFPG----VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CCceEEEeCC----EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 3689999953 469999999999999999999999999999999999999999999999998853 2334567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 530 VCPQYDILFPELTVREHLEMFAV-LKG--VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~-~~g--~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
|+||++.+++.+||+||+.+... ..+ .+.++..++++++++.+|+.+..++++.+|||||||||+|||||+.+|++|
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999987532 223 234445678899999999998889999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecC
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs 666 (1723)
||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|+
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999985 58999999999999999999999999999875443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-71 Score=702.84 Aligned_cols=207 Identities=23% Similarity=0.291 Sum_probs=182.8
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
+|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.
T Consensus 3 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHH
Confidence 5899999999953 359999999999999999999999999999999999999999999999987643 33445667
Q ss_pred eEEEccCCCC--C-C-----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHH
Q 000284 528 LGVCPQYDIL--F-P-----ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 528 ig~~~Q~~~l--~-~-----~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
+|++||++.+ + + .+||+|++.+. ...+++++++++.+||.+..++++++|||||||||+||+||
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 9999998643 1 1 47888887542 12356788999999999889999999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCH
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~ 667 (1723)
+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|+++..|++
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 219 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGER 219 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999985 489999999999999999999999999999876654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=740.06 Aligned_cols=221 Identities=20% Similarity=0.317 Sum_probs=185.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---------------------
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--------------------- 1412 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p--------------------- 1412 (1723)
.|+++||+++|+++ +++++|+|+||+|++||++||+||+||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~---~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR---PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCC---CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 48999999999752 134699999999999999999999999999999999999998
Q ss_pred ---------------------------------CceEEEEcCeeCCC-ChHHhccceEEEecCCCCCCCCCHHHHHHHHH
Q 000284 1413 ---------------------------------TDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA 1458 (1723)
Q Consensus 1413 ---------------------------------~~G~i~i~G~~i~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~ 1458 (1723)
++|+|.+||.|++. +...+|++||||||++.||+ .|++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC
Confidence 69999999999977 67788999999999999986 79999998742
Q ss_pred HHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 000284 1459 RIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527 (1723)
Q Consensus 1459 ~~~g~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~ 1527 (1723)
. ..+. +.+.++++..++. .........||||||||++|||||+++|+|||||||||+||+.+.
T Consensus 1321 ~--~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E--DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C--CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1 2222 2344445544443 233345668999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC----CEEE-EecChhHHHhh-cCC
Q 000284 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG----GQLR-CIGSPQHLKTR-FGN 1586 (1723)
Q Consensus 1528 ~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~----G~l~-~~g~~~~l~~~-~~~ 1586 (1723)
+.+.+.|.++...++ +|+|++||+++.+.. ||||++|++ |+++ +.|+.++|.++ .|.
T Consensus 1395 ~~I~~~L~~~~~~~~-~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKAD-KTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred HHHHHHHHHHhccCC-CEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 999999998742233 589999999998875 999999999 9955 89999999863 443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-69 Score=687.04 Aligned_cols=207 Identities=25% Similarity=0.334 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
.+|+++||+|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 57999999999953 45899999999999999999999999999999999999999999999873
Q ss_pred cceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1433 RLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1433 ~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
+++||+||++. +++.+|++|++.++.. .. ..++++.++++.+++. +..++++.+|||||||||+||+||+.+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----EG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc----CC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 46999999863 5567999999865321 11 1235677899999994 678999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHHhhcC
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLKTRFG 1585 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~-~~g~~~~l~~~~~ 1585 (1723)
|++|||||||+|||+.+++.+++.|+++ ++ |||++|||++++..+|||+++|++|+++ +.|+++++.+..+
T Consensus 457 p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~-tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKY----EG-TLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHC----CC-EEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 9999999999999999999999999875 23 8999999999999999999999999998 8899988876543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-69 Score=611.31 Aligned_cols=223 Identities=26% Similarity=0.475 Sum_probs=200.6
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
+.++++||+..|....+.+.||+++||++++||.+||+|++|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 5789999999998777778999999999999999999999999999999999999985 37999999999842
Q ss_pred -cHHHHh-cceEEEccCC--CCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHH
Q 000284 520 -DMDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKR 591 (1723)
Q Consensus 520 -~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~v~~~l~~~~l~~---~~~~~~~~LSgGqkq 591 (1723)
.+..+| .+||+++|+| .|.|-.|+...+.-..+ .+|++++++++++.++|+.+|+.+ ..+.++++|||||||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ 164 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ 164 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence 455566 5799999998 58888899888765444 468899999999999999999986 358899999999999
Q ss_pred HHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHH
Q 000284 592 KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF 669 (1723)
Q Consensus 592 rl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~ 669 (1723)
||.||+||+.+|++||-||||++||..-+.++.++|+++++ |.+++++|||+.-+..+||||+||.+|++++.|+.+.
T Consensus 165 RVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~ 244 (534)
T COG4172 165 RVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244 (534)
T ss_pred HHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHH
Confidence 99999999999999999999999999999999999999963 9999999999999999999999999999998877544
Q ss_pred H
Q 000284 670 L 670 (1723)
Q Consensus 670 L 670 (1723)
|
T Consensus 245 l 245 (534)
T COG4172 245 L 245 (534)
T ss_pred H
Confidence 4
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-68 Score=724.83 Aligned_cols=567 Identities=26% Similarity=0.415 Sum_probs=426.5
Q ss_pred eeEeccCCCccCchH---HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 000284 153 IRMVPFPTREYTDDE---FQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQF 229 (1723)
Q Consensus 153 ~~~~~fp~~~~~~d~---~~~~~~~~~~~~~~l~~~~~~~~~v~~iV~EKe~~lke~m~~mGl~~~~~wlsw~i~~~~~~ 229 (1723)
+...|+|........ .......+++++++++|.+..+.++.++|.|||+|.|+++.++|++..+||++.|+.-++.+
T Consensus 1656 v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y 1735 (2272)
T TIGR01257 1656 VISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNY 1735 (2272)
T ss_pred EEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 456788865422111 11123345677778888888889999999999999999999999999999999999877766
Q ss_pred HHHHHHHHHH-h---hcccccccCchhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHh---hhhh---
Q 000284 230 AVSSGIITAC-T---MDSLFKYSDKTVVFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLG-AFF---PYYT--- 298 (1723)
Q Consensus 230 ~i~~~ii~~~-~---~~~~~~~s~~~~~f~~~~l~~~s~i~~~~~iS~fF~~~~~a~~~~~l~~~~-~~~---p~~~--- 298 (1723)
++.+++++++ . ...+....++..+++++++||+|.|.|+|++|.+|+++..|.+...++.++ .++ ..++
T Consensus 1736 ~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~ 1815 (2272)
T TIGR01257 1736 AVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLEL 1815 (2272)
T ss_pred HHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444322 1 112223346677888999999999999999999999999887654332211 111 1111
Q ss_pred ccC----CCchhHHhHHHhhhchhHHHHHHHHHHHHhhc-----ccCccc-cccccCCCCchHHHHHHHHHHHHHHHHHH
Q 000284 299 VND----EAVPMVLKVIASLLSPTAFALGSVNFADYERA-----HVGLRW-SNMWRASSGVNFLVCLLMMLLDTLLYGVI 368 (1723)
Q Consensus 299 ~~~----~~~~~~~~~~~~l~~~~~~~~g~~~~~~~e~~-----~~g~~~-~~~~~~~~~~~~~~~~~~l~~d~~ly~~l 368 (1723)
... ......+++++.++|..+++.|+..++....- ..|-.. .+.+.- ...+..+++|++++++|++|
T Consensus 1816 ~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~ll~m~~~~iv~flL 1892 (2272)
T TIGR01257 1816 FENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSANPFQW---DLIGKNLVAMAVEGVVYFLL 1892 (2272)
T ss_pred hcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHHhhcccccCCccch---hhccHHHHHHHHHHHHHHHH
Confidence 111 12245678888899999999998777643210 011000 011100 01234567888999999999
Q ss_pred HHHhhccccCCCCccccccccccccccCcccccccccchhhHHhhhhhhhhhhhhhhcccCchhhhhhhhcccccccCcc
Q 000284 369 GLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGR 448 (1723)
Q Consensus 369 ~~yld~v~p~~~G~~~p~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 448 (1723)
.+++|.-. .+.. |.+... +. . . .++|.++.. |+.. .........
T Consensus 1893 l~~ie~~~-----~~~~---------~~~~~~-~~------~-~----~~eD~DV~~--------Er~r--V~~~~~~~~ 1936 (2272)
T TIGR01257 1893 TLLIQHHF-----FLSR---------WIAEPA-KE------P-I----FDEDDDVAE--------ERQR--IISGGNKTD 1936 (2272)
T ss_pred HHHHHhhh-----hhhh---------hccccC-cC------c-C----CCchhHHHH--------HHHH--HhccCCCCc
Confidence 99999521 0011 111110 00 0 0 001111110 1100 001111235
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.|+++||+|.|+++ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..+..+.|++|
T Consensus 1937 ~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 79999999999642 2579999999999999999999999999999999999999999999999999976666778899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
|||||++.+++.+||+||+.+++.++|.+.++.+++++++++.+||.+..|+++++|||||||||+||+||+++|+||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999988777788899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecCC
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 687 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~~ 687 (1723)
||||+||||.+|+.+|++|++++ +|+|||+|||+|+|++.+||||++|++|+++|.|++++||++||.||.+++..+..
T Consensus 2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~~~~~ 2174 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSP 2174 (2272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEEEcCc
Confidence 99999999999999999999985 58999999999999999999999999999999999999999999999998765432
Q ss_pred Ch------hhHHHHHHhhCCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEe
Q 000284 688 DA------SAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGI 761 (1723)
Q Consensus 688 ~~------~~~~~~~~~~~p~~~~~~~~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~i 761 (1723)
.. ....+.+.+.+|++...+.....++|.+|.. .+.++|+.+++. +..++|.+|++
T Consensus 2175 ~~~~~~~~~~v~~~i~~~fp~a~~~e~~~~~l~~~i~~~---~~~~if~~L~~~---------------k~~l~I~dysv 2236 (2272)
T TIGR01257 2175 KDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSS---SLARIFQLLISH---------------KDSLLIEEYSV 2236 (2272)
T ss_pred chhhhhHHHHHHHHHhhcCccceeeccccceEEEEeCcc---cHHHHHHHHHhc---------------CCCCCeEEEEc
Confidence 21 1233456677898877766677888999853 577888888763 34689999999
Q ss_pred cCCCHHHHHHHHhcCCC
Q 000284 762 SVTTLEEVFLRVAGCNL 778 (1723)
Q Consensus 762 s~ttLEevfl~~~~~~~ 778 (1723)
+++||||||+++++.+.
T Consensus 2237 sqtSLE~VFl~l~~~q~ 2253 (2272)
T TIGR01257 2237 TQTTLDQVFVNFAKQQT 2253 (2272)
T ss_pred CCCCHHHHHHHHhcccc
Confidence 99999999999987643
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-68 Score=680.98 Aligned_cols=207 Identities=27% Similarity=0.372 Sum_probs=178.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
++|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++
T Consensus 323 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~-------- 387 (556)
T PRK11819 323 KVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV-------- 387 (556)
T ss_pred eEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce--------
Confidence 57999999999953 4699999999999999999999999999999999999999999999843 21
Q ss_pred cceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1433 RLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1433 ~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
+|||+||++ .+++.+|++||+.+.....+.... +..+.++++.+++.+ ..++++++|||||||||+||+||+.+|
T Consensus 388 -~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 464 (556)
T PRK11819 388 -KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG 464 (556)
T ss_pred -EEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 499999996 788889999999876433333221 223457899999964 579999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-CEEE-EecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG-GQLR-CIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~-G~l~-~~g~~~~l~~ 1582 (1723)
++|||||||+|||+.+++.+++.|+++ . + |||++|||+++++.+||||++|++ |++. ..|+.+++.+
T Consensus 465 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~--tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 465 NVLLLDEPTNDLDVETLRALEEALLEF--P-G--CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHhC--C-C--eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999986 2 3 799999999999999999999986 7876 4777776543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=643.39 Aligned_cols=212 Identities=29% Similarity=0.489 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC--ccHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~--~~~~~~r 525 (1723)
+.++++|++|+|+ .++||+|+||++++|||+||+|+||||||||+|+|+|.++||+|+|.++|+.+. +..+..+
T Consensus 7 ~ll~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 7 PLLELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ceeeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence 4789999999994 567999999999999999999999999999999999999999999999999885 3456677
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKG----VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g----~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
..|++++|+..|+|+|||.||+.++..... +++..+++++.++|+.+|+....++++++||+||||.|+||||+..
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999987765432 5778899999999999999755899999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEE
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKC 663 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~ 663 (1723)
+++|||||||||.|++...+.+++++++++ +|.+||++||.|+|+.++||||.||+||+.++
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 999999999999999999999999999998 69999999999999999999999999999764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-67 Score=672.89 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=178.2
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
+++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|++++ ++
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~------- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV------- 385 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-------
Confidence 357999999999953 4699999999999999999999999999999999999999999999843 21
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1432 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1432 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
+|||+||++ .+++.+|+.||+.+.....+.... +..+.++++.+++.+ ..++++.+|||||||||+||+||+.+
T Consensus 386 --~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 386 --KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred --EEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence 599999986 478889999999875433333221 223557899999964 57999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-CEEE-EecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG-GQLR-CIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~-G~l~-~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|+++. + |||++|||+++++.+||||++|++ |+++ ..|+.++.++
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEALLEFA----G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHCC----C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999862 2 799999999999999999999987 5876 5577765543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=716.38 Aligned_cols=215 Identities=23% Similarity=0.359 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
..|+++|++++|+++ .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +...+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 459999999999632 3469999999999999999999999999999999999999999999999999987 67789
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-----------ccCCCCCCCChhHHHHH
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----------HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrl 1500 (1723)
|++||++||++.+|.. |+||||.++. ..+ ++++.++++..++.+ .......+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999975 9999998642 122 233455555555433 33345568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+++|+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|+|++|
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~-~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KS-CTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC-CEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999863 33 699999999999987 999999999999999999999
Q ss_pred Hhh
Q 000284 1581 KTR 1583 (1723)
Q Consensus 1581 ~~~ 1583 (1723)
.++
T Consensus 1460 l~~ 1462 (1622)
T PLN03130 1460 LSN 1462 (1622)
T ss_pred HhC
Confidence 875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=714.42 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
..|+++|++++|++ +.+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +...+
T Consensus 1233 g~I~f~nVsf~Y~~----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CcEEEEEEEEEECC----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 35999999999953 23569999999999999999999999999999999999999999999999999976 66788
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-----------ccCCCCCCCChhHHHHH
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----------HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrl 1500 (1723)
|++|+||||++.+|+. |+||||.++. ..++ +++.++++..++.+ .......+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999999975 9999998642 2222 33445555555433 33445678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+++|+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|++++|
T Consensus 1381 aLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~-~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1381 SLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KS-CTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CC-CEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999863 33 689999999999987 999999999999999999999
Q ss_pred HhhcC
Q 000284 1581 KTRFG 1585 (1723)
Q Consensus 1581 ~~~~~ 1585 (1723)
.++.+
T Consensus 1457 l~~~~ 1461 (1495)
T PLN03232 1457 LSRDT 1461 (1495)
T ss_pred HhCCC
Confidence 87644
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=611.95 Aligned_cols=211 Identities=28% Similarity=0.497 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC--ccHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~--~~~~~~r 525 (1723)
..+++++++|.|+ ...|.|||||+|++|||+||||+||||||||++||.|+++||+|+|+++|+.+. .+.+++|
T Consensus 3 ~~l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHH
Confidence 4799999999995 478999999999999999999999999999999999999999999999999875 5678899
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVL---KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~---~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
..||+|+||+.|++.+||.||+.++..- ..++....+++++++.+..||+-..++++.+||-||||||.|-+||..+
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999999999999999987643 2356778899999999999999999999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEE
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLK 662 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~ 662 (1723)
|++|||||||+-|-|...++++++|++++ +|+|||++||.++|+.++|||+.||++|+++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 99999999999999999999999999997 5999999999999999999999999999964
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-64 Score=702.73 Aligned_cols=217 Identities=21% Similarity=0.304 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
..|+++|++++|+++ ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ....+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 469999999999642 2469999999999999999999999999999999999999999999999999987 67789
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCCChhHHHHH
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrl 1500 (1723)
|++|||+||++.+|+. |+||||..+. ..++ +++.++++..++. ........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999985 9999997542 2232 3344555555543 233345567999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+++|+||||||||++||+++.+.|.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|++++|
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~-~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--ED-CTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CC-CEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999863 33 689999999999886 999999999999999999999
Q ss_pred HhhcC
Q 000284 1581 KTRFG 1585 (1723)
Q Consensus 1581 ~~~~~ 1585 (1723)
.++.|
T Consensus 1507 l~~~~ 1511 (1522)
T TIGR00957 1507 LQQRG 1511 (1522)
T ss_pred HhCCC
Confidence 87643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=665.42 Aligned_cols=204 Identities=21% Similarity=0.385 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
+.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 357999999999953 46999999999999999999999999999999999999999999998641
Q ss_pred ccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1432 RRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1432 ~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
.++||++|+. .+.+..|+.+++.. .. .....+.+.++|+.+++. +..++++++|||||||||+||++|+.
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 2599999974 35566788776532 11 122345678899999996 46899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHHh
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLKT 1582 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~-~~g~~~~l~~ 1582 (1723)
+|+||||||||+|||+.+++.+.++|+++ ++ |||++|||+++++.+||||++|++|+++ +.|+.++...
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 23 8999999999999999999999999997 7899988743
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=695.45 Aligned_cols=564 Identities=30% Similarity=0.460 Sum_probs=416.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCchh
Q 000284 174 RVMGVLYLLGFLYPISRLISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACT-MDSLFKYSDKTV 252 (1723)
Q Consensus 174 ~~~~~~~~l~~~~~~~~~v~~iV~EKe~~lke~m~~mGl~~~~~wlsw~i~~~~~~~i~~~ii~~~~-~~~~~~~s~~~~ 252 (1723)
...++++++.+++..+..+...|.||+.|.|+.|+++|+++++||++|++..++.+++..+++..+. ....+...+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~~~~~~~~~~ 377 (885)
T KOG0059|consen 298 LLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFGFFAGNNTVI 377 (885)
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccchHH
Confidence 3456666666777777778889999999999999999999999999999988877766654433322 112455567788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH----Hhhhhhc-cCCCchhHHhHHHhhhchhHHHHHHHHH
Q 000284 253 VFTYFFSFGLSAITLSFFISTFFARAKTAVAVGTLSFLGA----FFPYYTV-NDEAVPMVLKVIASLLSPTAFALGSVNF 327 (1723)
Q Consensus 253 ~f~~~~l~~~s~i~~~~~iS~fF~~~~~a~~~~~l~~~~~----~~p~~~~-~~~~~~~~~~~~~~l~~~~~~~~g~~~~ 327 (1723)
+++++++|+.+.+.+.|++|.+|++...|.....+..++. +++.... .....+....+...+.|+..+..+...+
T Consensus 378 ~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l 457 (885)
T KOG0059|consen 378 ILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYEL 457 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999998877655443322 2222211 1112222222333334443333222222
Q ss_pred HH--Hh---hcccCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccccccccccccccCcccccc
Q 000284 328 AD--YE---RAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIK 402 (1723)
Q Consensus 328 ~~--~e---~~~~g~~~~~~~~~~~~~~~~~~~~~l~~d~~ly~~l~~yld~v~p~~~G~~~p~~f~~~~~~w~~~~~~~ 402 (1723)
.. .+ ....|..|.+........... +.+.+...+.+.+.+...|+..|.+|....++|.++....
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 527 (885)
T KOG0059|consen 458 SSLAAEGNLNLNDGMSLEVLGNDESFYTLL----------LEWLLPLIGRRYLALVTEGVKDDLFFLLIFVPFKRRMRAL 527 (885)
T ss_pred HHHHHHhhhcchhhhhhhhhcccccccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence 11 11 123455666543321000000 0011111111112222344445554444444443322100
Q ss_pred --cccchhhHHhhhhhhhhhhhhhhcccCchhhhhhhhcccccccCcceEEEEeEEEEecCcCCccceeeeeeEEEeCCc
Q 000284 403 --HHVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQ 480 (1723)
Q Consensus 403 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Ge 480 (1723)
+... . ......++..+..+.. .++. ..........+.++||+|.|+.+.+ |++++|+.|++||
T Consensus 528 ~~~~~~-~----~~~~~~e~~~v~~e~~---~v~~----~~~~~~~~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~ge 592 (885)
T KOG0059|consen 528 TQNMLK-G----FEPVEVEKLDVARERN---RVET----LLFRSSYSSALVLNNLSKVYGGKDG---AVRGLSFAVPPGE 592 (885)
T ss_pred cccccC-C----CcCcchhhHHHHHHHH---hhhh----hhhcccccceEEEcceeeeecchhh---hhcceEEEecCCc
Confidence 0000 0 0000001100000000 0000 1111122357999999999976432 9999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCH
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 558 (1723)
Q Consensus 481 i~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~ 558 (1723)
|+|++|+|||||||+++||+|..+||+|+++++|+++.. +.+++++.||||||++.+|+.||.+||+.++++++|+++
T Consensus 593 cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~ 672 (885)
T KOG0059|consen 593 CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR 672 (885)
T ss_pred eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCCh
Confidence 999999999999999999999999999999999999976 555699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC-CcEEE
Q 000284 559 ELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIIL 637 (1723)
Q Consensus 559 ~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~-~~tii 637 (1723)
.++++.++++++.+||.+..+++++.+||||||||++|+|++++|++++|||||+||||.+||.+|+++++.++ |+.||
T Consensus 673 ~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aii 752 (885)
T KOG0059|consen 673 SDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAII 752 (885)
T ss_pred hHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 56999
Q ss_pred EEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecC-CChhhHHHHHHhhCCCceEEeeeCcEEEEE
Q 000284 638 LTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSA-PDASAAADIVYRHIPSALCVSEVGTEITFK 716 (1723)
Q Consensus 638 l~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 716 (1723)
+|||.|+||+.+|||++||.+|+++|.|++++||++||.||.+++.... ++.+.+.+.+++.+|++...+.....+.|.
T Consensus 753 LTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p~a~~~~~~~~~~~~~ 832 (885)
T KOG0059|consen 753 LTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFPGAVLKERHAGLLAFE 832 (885)
T ss_pred EEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCCCcchhhhhhceEEEE
Confidence 9999999999999999999999999999999999999999999987665 333577888999999999998888889999
Q ss_pred ecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCCHHHHHHHHhcCC
Q 000284 717 LPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCN 777 (1723)
Q Consensus 717 lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~is~ttLEevfl~~~~~~ 777 (1723)
+|.+......+.|..+|... ..+++.+|+++++||||||++++...
T Consensus 833 ip~~~~~~~~~vF~~le~~~---------------~~~~i~dyslsq~tLe~VFi~~a~~q 878 (885)
T KOG0059|consen 833 IPKDEVVSLSEVFLALEKAK---------------ESFGIEDYSLSQTTLEDVFLILAKTQ 878 (885)
T ss_pred cccchhhHHHHHHHHHHHHH---------------HhcCHHHHHHHHhhHHHHHHHHhccc
Confidence 99988888888999998753 47899999999999999999998754
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=655.88 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=174.7
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
++++++|++|.|++ . .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~------~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------ 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD------F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------ 399 (590)
T ss_pred eEEEEcceEEEECC------E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------
Confidence 46899999999952 2 4999999999999999999999999999999999999999999885
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
.+|||+||+..+++.+||+|++.+..... .. ...+.++++.++|.+..++++.+|||||||||+||+||+.+|++
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 14999999988888899999998643221 11 23467889999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|||||||+|||+.+++.++++|++++++.| +|||++|||++++..+|||+++|+ |++...|+
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEERE-ATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999975444 589999999999999999999996 57776654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-64 Score=651.79 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=177.8
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
+.+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 357999999999953 46999999999999999999999999999999999999999999998 5432
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1432 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1432 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
+|||++|+. .+++.+||.||+.+........ .....+.++++.+++. +..++++++|||||||||+||+||+.+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 499999985 6888999999997643211111 1234577889999996 568999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE-CCEEEE-ecChhHH
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV-GGQLRC-IGSPQHL 1580 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~-~G~l~~-~g~~~~l 1580 (1723)
|++|||||||+|||+.+++.+.++|+++ + .|||++|||++++..+|||+++|+ +|++.. .|+.++.
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY----Q-GTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999999999999999875 2 389999999999999999999998 899875 5777665
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-62 Score=678.55 Aligned_cols=215 Identities=20% Similarity=0.328 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
..|+++||+++|+++ .+.+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +...+
T Consensus 1307 G~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred CeEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 359999999999642 3469999999999999999999999999999999999999999999999999987 66788
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcccc-----------CCCCCCCChhHHHHH
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-----------KKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrl 1500 (1723)
|++|||+||++.||+. |+||||..+. ..+ ++++.++++..++.+.. .....+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc---CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 9999999999999975 9999997532 122 24566677777665432 234468999999999
Q ss_pred HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1501 SVAIAMIGD-PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1501 ~iA~al~~~-p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
+|||||+++ |+||||||||++||+++.+.+.+.|++.. ++ +|||+++|+++.+.. ||||++|++|++++.|++++
T Consensus 1455 aLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~-~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SA-YTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred HHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CC-CEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHH
Confidence 999999995 89999999999999999999999999863 23 689999999998876 99999999999999999999
Q ss_pred HHhh
Q 000284 1580 LKTR 1583 (1723)
Q Consensus 1580 l~~~ 1583 (1723)
|.++
T Consensus 1531 Ll~~ 1534 (1560)
T PTZ00243 1531 LVMN 1534 (1560)
T ss_pred HHhC
Confidence 9864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=667.08 Aligned_cols=215 Identities=25% Similarity=0.407 Sum_probs=186.1
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHH
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1430 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~ 1430 (1723)
...|+++||+++|+. +.+.+|+|+||+|++||.+||+|++|||||||+++|.|+++ ++|+|.|||.|+.. ....
T Consensus 1215 ~g~I~f~nVs~~Y~~----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTE----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred CCeEEEEEEEEEeCC----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH
Confidence 346999999999964 23579999999999999999999999999999999999997 89999999999977 5677
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccC-----------CCCCCCChhHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK-----------KPSFTLSGGNKRK 1499 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~kqr 1499 (1723)
+|++|+|+||++.+|+. |+||||..+. ..+ ++++.++++..+|.+... .....||||||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~~---~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr 1361 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYE---QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL 1361 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCccc---CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH
Confidence 89999999999999985 9999997542 112 345666777777654322 2334799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+++|+||||||||++||+.+.+.|.+.|++.. + ++|||++||+++.+.. ||||++|++|++++.|+|++
T Consensus 1362 L~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~-~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--S-NCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999863 2 3699999999999886 99999999999999999999
Q ss_pred HHhh
Q 000284 1580 LKTR 1583 (1723)
Q Consensus 1580 l~~~ 1583 (1723)
|.++
T Consensus 1438 Ll~~ 1441 (1490)
T TIGR01271 1438 LLNE 1441 (1490)
T ss_pred HHcC
Confidence 9864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=634.93 Aligned_cols=204 Identities=27% Similarity=0.440 Sum_probs=173.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
++|+++|+++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 47999999999953 24589999999999999999999999999999999999999999999865 2
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHH-HH-HcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELY-AR-IKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~-~~-~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.+|||+||+. .+.+++.++..+. .. ..+.. ++.+.++|+.+++. +..++++.+|||||||||+||+||+.+
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 3699999985 2345666664332 22 12222 34677899999997 468899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~-~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+.+.|.++ + + |||++|||++++..+|||+++|.+|+++ ..|++++.++
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~-g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF---Q-G-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc---C-C-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999888764 2 3 8999999999999999999999999998 6788877654
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-61 Score=632.50 Aligned_cols=226 Identities=22% Similarity=0.340 Sum_probs=195.0
Q ss_pred cccCCCCcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeC
Q 000284 1345 VLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1424 (1723)
Q Consensus 1345 v~~~~~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i 1424 (1723)
.+.+++.+..|+++|++.+|.. +...+|+||||+|++||.+||+|+.|||||||+++|-++.+|++|+|.|||.|+
T Consensus 1129 pp~~WP~~G~I~f~~~~~RYrp----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI 1204 (1381)
T KOG0054|consen 1129 PPPSWPSKGEIEFEDLSLRYRP----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204 (1381)
T ss_pred CCCCCCCCCeEEEEEeEEEeCC----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeec
Confidence 4455677778999999999964 346799999999999999999999999999999999999999999999999999
Q ss_pred CC-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-----------cccCCCCCCC
Q 000284 1425 RS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-----------KHAKKPSFTL 1492 (1723)
Q Consensus 1425 ~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 1492 (1723)
.+ ....+|++++.+||||.||.. |+|.||.-+... + ++.+-++|++.+|. .....-..++
T Consensus 1205 ~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~---s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1205 SKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY---S----DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred ccccHHHHHhcCeeeCCCCceecC-ccccccCccccc---C----HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 87 678899999999999999975 999999876543 1 22334445554443 3333445789
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000284 1493 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572 (1723)
Q Consensus 1493 SgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~ 1572 (1723)
|-||||-|||||||+++++||+|||+|+++|+++-..|.+.|++-= .++|||.+.|+++.+.. ||||+||++|+++
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F---~dcTVltIAHRl~TVmd-~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF---KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVV 1352 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh---cCCeEEEEeeccchhhh-cCeEEEeeCCeEe
Confidence 9999999999999999999999999999999999999999999842 34799999999999998 9999999999999
Q ss_pred EecChhHHHhhcCC
Q 000284 1573 CIGSPQHLKTRFGN 1586 (1723)
Q Consensus 1573 ~~g~~~~l~~~~~~ 1586 (1723)
+.|+|++|.++.+.
T Consensus 1353 EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1353 EFDSPAELLSDKDS 1366 (1381)
T ss_pred ecCChHHHHhCCcc
Confidence 99999999876443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=608.79 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=176.3
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHH
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~ 1430 (1723)
++.+++++|++|.|++ .+.+++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.- .
T Consensus 318 g~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~------- 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T------- 384 (530)
T ss_pred CCeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c-------
Confidence 3568999999999964 25799999999999999999999999999999999999999999987732 1
Q ss_pred hccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1431 ARRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
-+|||.+|+. .+.++.|+.|++.-.. +. ..+..++..|.+|++. +...++++.||||||.||.+|+.++.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF-----PD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC-----cc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 2499999985 4557779999886432 11 1156788899999996 56789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEe-cChhHHHh
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI-GSPQHLKT 1582 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~-g~~~~l~~ 1582 (1723)
+|++|||||||++||..+++.+.++|.++. | |||+||||.++++++|++++++.+ ++... |+.++...
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---G--tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDFE---G--TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhCC---C--eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999999872 3 799999999999999999999998 66554 77766554
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-55 Score=557.81 Aligned_cols=816 Identities=20% Similarity=0.283 Sum_probs=494.8
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEccccCCccHHHHhcceEEEccCCCCCCCC
Q 000284 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---TTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 541 (1723)
Q Consensus 465 ~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p---~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~l 541 (1723)
...+++|+|.-+++|+.+.++||.|||||||++.|+|-++- ..|+|..+|++...... ++.++|++|+++.+++|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 35799999999999999999999999999999999998764 35799999998765443 78899999999999999
Q ss_pred CHHHHHHHHHHhcCC-------CHHH-HHHHHHHHHHHcCCCcccccccC-----CCChhHHHHHHHHHHHhcCCcEeec
Q 000284 542 TVREHLEMFAVLKGV-------KEEL-LESVVAEMVDEVGLADKVNIVVR-----ALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 542 Tv~e~l~~~~~~~g~-------~~~~-~~~~v~~~l~~~~l~~~~~~~~~-----~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||+|.|.|.++.++. ++.+ ..+..+.+++.+||.+..|..++ ..|||||+||++|-+++++++++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999999998864 1222 11256789999999988777664 6999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCH-HHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC-CcEEEEEEe
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSM-DEAEELGDRIAIMANGSLKCCGSSLFLKHQYG-VGYTLTLVK 684 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~-~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g-~gy~l~~~~ 684 (1723)
||+|.|||..+.-++.+.|+++.+ +.|.+++-|.. +++-.+-|.|.+|.+|+++.+|+.++.+.-|- .||+ +
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~--c-- 360 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFK--C-- 360 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCcc--C--
Confidence 999999999999999999999853 77888777776 78888999999999999999999998887653 3553 1
Q ss_pred cCCChhhHHHHHHhhCCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCC
Q 000284 685 SAPDASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVT 764 (1723)
Q Consensus 685 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~is~t 764 (1723)
+......+++.+- ..-+...+...+-.-..|......+.+.+...+.
T Consensus 361 --P~r~~~ADfLt~v-ts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~------------------------------ 407 (1391)
T KOG0065|consen 361 --PPRKGTADFLTEV-TSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSED------------------------------ 407 (1391)
T ss_pred --CCccCHHHHHHHh-hcCccccccccccCCCcccCCHHHHHHHHhcchh------------------------------
Confidence 1111222332221 1100000000000000111111112222211111
Q ss_pred CHHHHHHHHhcCCCcchhhhhhccccccccccccccCCCCccccccccccCCcccccceeeeeecchhhhhhHHhhhhhh
Q 000284 765 TLEEVFLRVAGCNLDESECISQRNNLVTLDYVSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLGFLN 844 (1723)
Q Consensus 765 tLEevfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1723)
+.++...- +.+.++... .+ ++.
T Consensus 408 -----~~~l~~~l-------------------~~~~~~~k~-----~~-----------------~al------------ 429 (1391)
T KOG0065|consen 408 -----YAKLKKEL-------------------SKPYDKSKK-----HK-----------------AAL------------ 429 (1391)
T ss_pred -----hHHHHHHh-------------------cchhhhhhc-----cc-----------------hhh------------
Confidence 00000000 000000000 00 000
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH-HHHhccCCCCCCccccccccCCccc
Q 000284 845 FLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGL-LFLKLKPHPDMLSVTFTTSNFNPLL 923 (1723)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~q~~all~KR~~~~~R~~~~~~~~lllP~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~ 923 (1723)
+...-...+|.|+++.+++-++..+||...++++.+-+++..++.. ++.+.. . .++.
T Consensus 430 --------~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~-~-------~t~~------ 487 (1391)
T KOG0065|consen 430 --------VSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTP-M-------STTS------ 487 (1391)
T ss_pred --------cCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeecc-C-------cccc------
Confidence 0000123579999999999999999999988887776655433221 111100 0 0000
Q ss_pred CCCCCCCCcccccCchhhhhhhhhhccCcccccccCCCCCCChHHHHHHHHHhcCCCCccchhchhHHHHHhhhhccccc
Q 000284 924 SGGGGGGPIPFDLSWPIANEVSKYIQGGWIQRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMSSFNESYQSR 1003 (1723)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1003 (1723)
+.
T Consensus 488 --------------------------~~---------------------------------------------------- 489 (1391)
T KOG0065|consen 488 --------------------------GG---------------------------------------------------- 489 (1391)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred ccEEEeeccCCCCceeEEEEeCCcCCChHHHHHHHHHHHHHHHhcCCCcceEEEEeecCCcchhhhhhhchhhhhHHHHH
Q 000284 1004 YGAIVMDDQNDDGSLGFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRNHPLPTTQSQQLQRHDLDAFSVSII 1083 (1723)
Q Consensus 1004 ~g~~~~~~~~~~~~~~~~~~~N~~~~hs~p~~ln~l~nailr~~~~~~~~~I~~~n~Plp~~~~~~~~~~~~~~~~~~i~ 1083 (1723)
| ..++..+..+ .++
T Consensus 490 ---------------------~---~~~~~lffsl------------------------------------------l~~ 503 (1391)
T KOG0065|consen 490 ---------------------Y---SRGGALFFAL------------------------------------------LFN 503 (1391)
T ss_pred ---------------------h---hhhhHHHHHH------------------------------------------HHH
Confidence 0 0000000000 011
Q ss_pred HHHHHHHhhhHhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccchHHHH
Q 000284 1084 ISIAFSFIPASFAVAIVKEREVKAKQQQLISGVSVLSYWTSTYIWDFISFLFPSSCA-IILFYIFGLDQFVGRGCLLPTV 1162 (1723)
Q Consensus 1084 i~~~~s~i~a~f~~~~V~ER~~k~k~lq~vsGv~~~~YW~s~~i~D~i~~li~~~~~-iii~~~f~~~~~~~~~~~~~~~ 1162 (1723)
...+++=++..|.-.+|.+|+. -.+=..|++|=++..+.|+..-++.+.+. +++++..+... ..+.++..+
T Consensus 504 ~f~~laEi~~~~~~~pv~~Khr------~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~--~A~rFF~~f 575 (1391)
T KOG0065|consen 504 LFNGLAEIALTFQRLPVFYKHR------DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKR--NAGRFFIQF 575 (1391)
T ss_pred HHHhHHHHHHHHhhcchHHHhh------cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc--chHHHHHHH
Confidence 1111222222333333333322 12335789999999999988766555443 44444444321 223345555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHH
Q 000284 1163 LIFLGYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGLLEATRSANSLLKNFFRLSPGFCFADGLAS 1242 (1723)
Q Consensus 1163 lllllyG~a~i~~~Yl~Sf~F~~~~~a~~~~~~~~~~~g~~~~i~~~il~~~~~~~~~~~~l~~~f~l~P~~~l~~gl~~ 1242 (1723)
++++++-.++..+.=+++-+..+...| +.+.|+...++...-+..-+..+....++|+..+.|.---..+++.
T Consensus 576 L~lf~~~~~~s~lFr~ia~l~~t~~~A-------n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~ 648 (1391)
T KOG0065|consen 576 LFLFLCQFCMSGLFRFIASLSRTLSIA-------NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMS 648 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHH-------hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHH
Confidence 555555555444444444333333322 2222222222221112111223334456677777774222223322
Q ss_pred HHHHhh----c------------ccCC----------------C------CCCccccccchhhHHHHHHHHHHHHHHHHH
Q 000284 1243 LALLRQ----G------------MKDK----------------T------SDGVFDWNVTSASICYLGCESICYFLLTLG 1284 (1723)
Q Consensus 1243 l~~~~~----~------------~~~~----------------~------~~~~~~~~~~g~~i~~l~~~~i~~~ll~l~ 1284 (1723)
-..... . ...+ . ....+-|...|+.++|.+.-.+++.+++-+
T Consensus 649 NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~y 728 (1391)
T KOG0065|consen 649 NEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEY 728 (1391)
T ss_pred hhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHh
Confidence 111100 0 0000 0 012234555566666665444444333322
Q ss_pred HHhccccchhhhHHhhhhccccccccCCCCCCCcccccCCCCCCcCCCCcchhhHHHhhhcc----cCCCCcceEEEEeE
Q 000284 1285 LELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVL----SGSVDNAIIYLRNL 1360 (1723)
Q Consensus 1285 le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~dV~~Er~rv~----~~~~~~~~l~v~~l 1360 (1723)
+.. ....... . .+++.+... .+........ .+..+|...+.++..+. .....+.+...+|+
T Consensus 729 l~p--~~~~~~~--l-~~~~~~~~~--------~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl 793 (1391)
T KOG0065|consen 729 LKP--LKKSGAI--L-VFKKGKEKK--------KVKSAGSSSE--IEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDL 793 (1391)
T ss_pred cCc--cccccce--e-eeccchhhh--------cchhcccccc--ccccccccccccccccCCCccccccccceEEEEeC
Confidence 221 0000000 0 000000000 0000000000 00000000000111110 01123345666666
Q ss_pred EEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEEcCeeCCCChHHhccceEEE
Q 000284 1361 RKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--PTDGTAFIFGKDIRSDPKAARRLIGYC 1438 (1723)
Q Consensus 1361 ~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~ig~~ 1438 (1723)
.+.-+.. .++++.|+||+=-++||-..||+|++||||||||++|+|-.. -.+|+|.|+|.+... +..+|.+|||
T Consensus 794 ~~~~~~q--G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF~R~~GYv 869 (1391)
T KOG0065|consen 794 PYEMPIQ--GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETFARVSGYV 869 (1391)
T ss_pred Ccccccc--ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhhcccccee
Confidence 6554322 146789999999999999999999999999999999999753 247999999998643 5678889999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHc---CCChhhHHHHHHHHHHHcCCccccCCCCCC----CChhHHHHHHHHHHHhcCC-
Q 000284 1439 PQFDALLEYLTVQEHLELYARIK---GVAEYRMDDVVMEKLVEFDLLKHAKKPSFT----LSGGNKRKLSVAIAMIGDP- 1510 (1723)
Q Consensus 1439 pQ~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----LSgG~kqrl~iA~al~~~p- 1510 (1723)
-|+|...+.+||||-|.+.|.+| .++.++..+.++++++.++|++.+|..++. ||..||+||.||.-|+.+|
T Consensus 870 qQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 870 EQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred ecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 99998889999999999999887 345555567899999999999888887777 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHH-HHHHHcCEEEEEE-CCEEEEecChhH
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN-EAQALCTRIGIMV-GGQLRCIGSPQH 1579 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~-e~~~l~drv~im~-~G~l~~~g~~~~ 1579 (1723)
.||+|||||||||.++.-.+.+.+++++ +.| .||+.|-|... ++-+--||++.|+ .|+.+..|++.+
T Consensus 950 ~ilFLDEPTSGLDsqaA~~i~~~lrkla-~tG-qtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 950 SILFLDEPTSGLDSQAAAIVMRFLRKLA-DTG-QTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred eeEEecCCCCCccHHHHHHHHHHHHHHH-hcC-CeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999999997 456 58999999865 3334479999996 578999998754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-53 Score=449.88 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=208.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHhc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRK 526 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~ 526 (1723)
.|+++||+|+|+ +..+|+|+|++|.+||+++|+||+||||||+|++|.||.+|++|+|.++|.++.. +..++|+
T Consensus 2 mi~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 589999999994 5679999999999999999999999999999999999999999999999987743 6778999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFA-VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
++|+|+|+..|||++||.||+.+.. ..+|.+++++++++.++|+++||.++.|.++.+|||||||||+|||||+.+|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 9999999999999999999998764 568999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+++|||||+|||+...++.+.+++++ +|.|+|++||+|.+|..+||||+.|++|++++.|+|+++-.
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 99999999999999999999999996 59999999999999999999999999999999999987754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=452.50 Aligned_cols=297 Identities=27% Similarity=0.463 Sum_probs=246.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
++++++|+|+|+ ++.||+|+||+|++||++|++|+|||||||++|||.|+++||+|+|.++|.++.. ..+.
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 589999999995 5779999999999999999999999999999999999999999999999998864 4567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+|||+|.+.+|++.+||.|.|.|+|+++|++.+++++.+..+|+++++..+..+++.+||.||+||+.+..|++++|++|
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCeEEEEEe
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1593 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~~~~~~~~ 1593 (1723)
|||||+|||||.+.+.+.+.|.+++ ++| .|||++||.|+-+|.+|||+++|++|+.+..|+.+++++.||+...+ +.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk-~~G-atIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~-ie 229 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELK-EEG-ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLV-IE 229 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHH-hcC-CEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEE-Ee
Confidence 9999999999999999999999996 455 68999999999999999999999999999999999999999864322 22
Q ss_pred ecCCCcccHHHHHHHHHhccccCCcchhhhhhhhhhhhccccccccCCCceeeechhHHHHHHHHhhhccccceeEeEec
Q 000284 1594 PTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISS 1673 (1723)
Q Consensus 1594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1673 (1723)
. +...+.+. .+|...+. . ...++.-..++.-++. -..+-+....+.-|+++..+
T Consensus 230 s----~~s~eeL~--------~ipgi~~~------------~-~~~~G~~~i~ie~e~~-a~~ifq~~a~~g~i~~Fe~~ 283 (300)
T COG4152 230 S----DLSLEELA--------NIPGILKI------------T-ETKDGSWRIQIENETV-AREIFQEVARDGYIQRFELQ 283 (300)
T ss_pred c----cCchHHHh--------cCCCceee------------e-eccCCceEeecccchH-HHHHHHHHhccceeEEEeec
Confidence 1 11111111 22211100 0 0011111112211112 22333333356679999999
Q ss_pred CCChhhHHHHhhccc
Q 000284 1674 SSSPDRIFGEQLSEQ 1688 (1723)
Q Consensus 1674 ~~sl~~vf~~~t~~~ 1688 (1723)
.|||+|+|++.+|.+
T Consensus 284 ~PsL~diFi~~~g~~ 298 (300)
T COG4152 284 EPSLHDIFIEKVGGV 298 (300)
T ss_pred CCCHHHHHHHHhccc
Confidence 999999999999875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=446.52 Aligned_cols=225 Identities=34% Similarity=0.528 Sum_probs=214.7
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
||++.+|+|+|+. ...|++||||++++||++||+|+|||||||++|||++++.|++|.|+++|.|..+++..+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5889999999974 34599999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+||.++.+..+|..||++|||.|+++++|+.+.++++++.++.++++|.+.+|++++.||-||||||+|||||+++|+++
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~ 1585 (1723)
+|||||+|||..+++.+.+.|++++ +.| ++||++||+|+|++++||||+++++|+++..|+++++..+.+
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k-~eg-r~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLK-NEG-RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhh-cCC-cEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 9999999999999999999999985 445 589999999999999999999999999999999999987654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=454.84 Aligned_cols=221 Identities=34% Similarity=0.544 Sum_probs=211.8
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
+|+++||+|.|+ ++.||+|+||+|++||+++|+||+||||||+|+||.++++||+|+|+|+|+++.. +..++|++
T Consensus 1 MI~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 1 MIEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred CceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence 478999999995 4579999999999999999999999999999999999999999999999999975 77889999
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD--KVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~--~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
||||-|...|||++||.||+.+...++|+++++++++++++|+.+||++ +.++++++|||||+||+.+||||+.+|++
T Consensus 77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 9999999999999999999999999999999999999999999999974 78999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+++|||+++|||.+|.++.+.++++++ |+|||++|||||||..+||||++|++|+++..|+|+++.++
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999864 89999999999999999999999999999999999988754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=439.42 Aligned_cols=222 Identities=28% Similarity=0.468 Sum_probs=208.5
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC--ChHHh
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS--DPKAA 1431 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~--~~~~~ 1431 (1723)
+|+++||+|+|+ +..+|+|||++|++||++.|+||+||||||++|+|.|+.+|++|+|.++|.++.. +..+.
T Consensus 2 mi~i~~l~K~fg------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFG------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeC------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 689999999996 4679999999999999999999999999999999999999999999999987744 45678
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHH-HHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
|+++|+|+|+..|||.+||.||+.+.. ..+|.++++.++.+.++|+++||.++++.++.+|||||||||+|||||+.+|
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 999999999999999999999998754 4578999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+++++|||||+|||+...++.+.+++++ ++| .|.|++||+|.++..+||||+.|++|++++.|+|+++...
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA-~eG-mTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLA-EEG-MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHH-HcC-CeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999997 455 6999999999999999999999999999999999998653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=478.61 Aligned_cols=290 Identities=37% Similarity=0.652 Sum_probs=242.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
.++++||+|+|++ ++.||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++..+..+.++
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5789999999962 36799999999999999999999999999999999999999999999999999877778899
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+|||+||++.+++.+||+|||.+++++++.+....+++++++++.++|.+..++++++||+||||||+||+||+++|++|
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999876556678999999999998778999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCeEEEEEe
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 1593 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~~~~~~~~ 1593 (1723)
||||||+||||.+++.+|+.|++++++ |++||+++||.++|++.+||||++|++|++++.|+++++...++....+...
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~~~~ 237 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceEEEe
Confidence 999999999999999999999999754 4469999999999999999999999999999999999998887654433332
Q ss_pred ecCCCcccHHHHHHHHHhccccCCcchhhhhhhhhhhhccccccccCCCceeeechhHHHHHHHHhhhccccceeEeEec
Q 000284 1594 PTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISS 1673 (1723)
Q Consensus 1594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1673 (1723)
..... . .. . ... . .... + .............+...+..+...
T Consensus 238 ~~~~~-~--~~---~-~~~---~---------------~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
T COG1131 238 PERLE-L--AE---L-LEG---L---------------KLVK-----G--------EEELAEILEALLEEGVKIESIEVK 279 (293)
T ss_pred ccccc-c--hh---h-hhc---c---------------cccc-----c--------chhHHHHHHHHHHcCCceeeeecC
Confidence 21100 0 00 0 000 0 0000 0 122233334444456667789999
Q ss_pred CCChhhHHHHhhcc
Q 000284 1674 SSSPDRIFGEQLSE 1687 (1723)
Q Consensus 1674 ~~sl~~vf~~~t~~ 1687 (1723)
.++|+++|+.++++
T Consensus 280 ~~~l~~~~~~~~~~ 293 (293)
T COG1131 280 EPSLEDVFLELTGR 293 (293)
T ss_pred CCCHHHHHHHHccC
Confidence 99999999998863
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=435.68 Aligned_cols=224 Identities=32% Similarity=0.520 Sum_probs=215.7
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
++++.+|+|+|++ ...|++|+||++++|||+||+|+|||||||+|+||++++.||+|.|+++|.|...+...+|++|
T Consensus 1 Ml~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc
Confidence 4789999999975 3459999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
|+++-+..++..||++|||.|++++.|+.+.+++++++++.+.++|.+.+|++++.+|-||||||+|||||+++|++++|
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
||||||||..+++.+.+.++++++ ||+||++||.|+|++.+||||+++++|+++..|++..++.+-+
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 999999999999999999999986 9999999999999999999999999999999999999887644
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=445.30 Aligned_cols=223 Identities=34% Similarity=0.542 Sum_probs=213.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
||+++|++|.|+ ++.||+|+||+|++||++.|+||+||||||++|||.++++||+|+|+++|+++.. +..++|
T Consensus 1 MI~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 588999999996 3679999999999999999999999999999999999999999999999999987 677899
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc--cccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++|||+-|..+|||++||.||+.+...+.|.++++++++++++|+.+||. ++++|++++|||||||||.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+||+||||+++|||.+|..+.+.+.++.++-| +|||++||||+|+.+++|||++|++|+++..++|+++..+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~-kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999977666 6899999999999999999999999999999999998764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-50 Score=476.39 Aligned_cols=225 Identities=40% Similarity=0.642 Sum_probs=209.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
.+++++||+|+|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.......+
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 57999999999963 569999999999999999999999999999999999999999999999999977666678
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
++||||||++.+++.+|++||+.+++..+|.+..+..+++.++++.++|.+..++++++|||||||||+||+||+++|++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE
Confidence 89999999999999999999999988888877666677788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~ 1585 (1723)
|||||||+||||.+++.+|++|++++ ++| +|||++||+++|++.+||||++|++|++++.|+++++++...
T Consensus 160 llLDEPt~gLD~~~~~~l~~~l~~l~-~~g-~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~ 230 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLL-ARG-KTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEI 230 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHH-hCC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccC
Confidence 99999999999999999999999995 444 689999999999999999999999999999999999987643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=457.44 Aligned_cols=223 Identities=30% Similarity=0.502 Sum_probs=211.2
Q ss_pred eEEEEeEEEEecCc-CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC----ccHHH
Q 000284 449 CIQIRKLHKVYATK-RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT----ADMDE 523 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~-~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~----~~~~~ 523 (1723)
+|++++|+|.|..+ .+...||+|+||+|++|||+||+|++|||||||++++.++.+||+|+|.++|.|+. ....+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48899999999873 33467999999999999999999999999999999999999999999999999885 35678
Q ss_pred HhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
.|++|||+|||+.|+...||+||++|..++.|.+++++++++.++|+.+||+++.++++.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+||+.|||||+|||.+.+.+.++|+++.+ |-||+++||.||.+..+|||+++|++|++++.|+..++-
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999853 999999999999999999999999999999999986653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=454.63 Aligned_cols=227 Identities=28% Similarity=0.483 Sum_probs=213.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC----ChH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS----DPK 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~----~~~ 1429 (1723)
+|++++++|.|+.+ ..+...||+||||+|++|||+||+|.+|||||||+|++.++.+|++|+|.++|.++.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58999999999864 2345679999999999999999999999999999999999999999999999999865 234
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..|++||+++|+..|+...||.||+.|...+.|.+++++++++.++|+.+||.+++++++.+|||||||||+|||||+.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+||+.|||||+|||++.+.+.++|++++++.| .||+++||.|+-+.++||||++|++|++++.|+..++..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 999999999999999999999999999987765 799999999999999999999999999999999888754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=465.04 Aligned_cols=229 Identities=43% Similarity=0.736 Sum_probs=214.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.++++||+|.|+. ++.||+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..+..++|+++
T Consensus 4 ~i~~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 5889999999952 3579999999999999999999999999999999999999999999999999987777889999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||+||++.+++.|||+|||.|++.+++.+.+..+++++++++.+||.+..++++++||+||||||+||+||+++|+++||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999987666678999999999999877899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhC-C-cEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEE
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIKK-G-RIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 680 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~~-~-~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l 680 (1723)
||||+||||.+|+.+|++|+++++ | +||+++||.++|++.+||||++|++|+++++|++.+++..++.-...
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~ 234 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVI 234 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceE
Confidence 999999999999999999999964 5 89999999999999999999999999999999999999887765443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=464.83 Aligned_cols=230 Identities=36% Similarity=0.594 Sum_probs=213.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.....+.|++
T Consensus 6 ~~i~i~~l~k~~~----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred ceEEEEeEEEEEC----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 4799999999995 346999999999999999999999999999999999999999999999999987665677889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||||++.+++.+||+||+.+++..+|.+..+.+++++++++.++|.+..++++++||||||||++||+||+++|++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999998888888777777889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEE
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLT 681 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~ 681 (1723)
|||||+||||.+|+++|++|++++ +|+|||++||+++|++.+||||++|++|++++.|++.++++.......+.
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~ 236 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEEE
Confidence 999999999999999999999986 48999999999999999999999999999999999999987754433333
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=470.76 Aligned_cols=228 Identities=38% Similarity=0.630 Sum_probs=209.3
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHH
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~ 1430 (1723)
...+|+++||+|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus 38 ~~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 38 STVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111 (340)
T ss_pred CceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHH
Confidence 3457999999999963 5699999999999999999999999999999999999999999999999998765566
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
.++.||||||++.+++.+|++||+.+++..++.+..+..+++.++++.++|.+..++++++|||||||||+||+||+++|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78899999999999999999999998888877665555667788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCC
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~ 1586 (1723)
++|||||||+||||.+++.+|++|+++++ +| +|||++||++++++.+||||++|++|++++.|++++++++...
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g-~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~ 265 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA-RG-KTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIG 265 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccC
Confidence 99999999999999999999999999964 44 5899999999999999999999999999999999999876543
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=425.53 Aligned_cols=295 Identities=26% Similarity=0.477 Sum_probs=251.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
++++++|+|+|+ ++.||+|+||++++|+|+|++|||||||||+++||.|+++||+|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg----~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG----DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRI 74 (300)
T ss_pred ceEEecchhccC----ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhc
Confidence 588999999994 5679999999999999999999999999999999999999999999999998864 456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||.|.+..|++.+||.|.|.|+++++|+++++++++++..|+++++..+..+++.+||-|++||+++-.|++++|+++||
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecCC
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAP 687 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~~ 687 (1723)
|||+|||||.+.+.+-+.+.+++ +|.|||++||.|+.+++|||++++|++|+.+..|+....++.||.--. .+. ...
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-~ie-s~~ 232 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-VIE-SDL 232 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-EEe-ccC
Confidence 99999999999999999999998 599999999999999999999999999999999999999999997432 222 221
Q ss_pred ChhhHHHHHHhhCCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCCHH
Q 000284 688 DASAAADIVYRHIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLE 767 (1723)
Q Consensus 688 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~is~ttLE 767 (1723)
..++ ...+|.........+-.-+ +..++......+|+.+.. +.-|..|.+..+||+
T Consensus 233 s~ee-----L~~ipgi~~~~~~~~G~~~-i~ie~e~~a~~ifq~~a~------------------~g~i~~Fe~~~PsL~ 288 (300)
T COG4152 233 SLEE-----LANIPGILKITETKDGSWR-IQIENETVAREIFQEVAR------------------DGYIQRFELQEPSLH 288 (300)
T ss_pred chHH-----HhcCCCceeeeeccCCceE-eecccchHHHHHHHHHhc------------------cceeEEEeecCCCHH
Confidence 2121 2345665544432221222 222333344556655543 456889999999999
Q ss_pred HHHHHHhcC
Q 000284 768 EVFLRVAGC 776 (1723)
Q Consensus 768 evfl~~~~~ 776 (1723)
|+|+--++.
T Consensus 289 diFi~~~g~ 297 (300)
T COG4152 289 DIFIEKVGG 297 (300)
T ss_pred HHHHHHhcc
Confidence 999976553
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=460.87 Aligned_cols=231 Identities=37% Similarity=0.588 Sum_probs=213.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..|+++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++.
T Consensus 40 ~~i~i~nl~k~y~----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSYG----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eeEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 4799999999995 346999999999999999999999999999999999999999999999999987655677889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||||++.+++.+||.||+.+++..++.+..+.+++++++++.++|.+..++++++||||||||++||+||+++|++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999988877777666667788899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEE
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 682 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~ 682 (1723)
|||||+||||.+|+++|++|++++ +|+|||++||++++++.+||||++|++|++++.|++.++++.+...+...+
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~ 271 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEI 271 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEEE
Confidence 999999999999999999999986 589999999999999999999999999999999999999887655444433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-49 Score=423.83 Aligned_cols=221 Identities=32% Similarity=0.557 Sum_probs=208.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~ 523 (1723)
..|++++|+|+|+ ++.+++|+||+|++||+++++|++|+|||||+++|.|+++|++|+|.++|+++.. +..+
T Consensus 7 ~~I~vr~v~~~fG----~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSFG----DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeecC----CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 5799999999994 5679999999999999999999999999999999999999999999999999853 4557
Q ss_pred HhcceEEEccCCCCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCChhHHHHHHHHHHHhc
Q 000284 524 IRKGLGVCPQYDILFPELTVREHLEMFAVL-KGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-~g~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
+|+++|+++|+..||..|||+||+.|..+- ..++++.+++.+..-|+.+||... .+..+++|||||++|++||||++.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 899999999999999999999999997654 468899999999999999999987 899999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+|+++++||||+||||.+...+-++|+++++ |.|++++|||++++..+||||+++.+|+++.+|+++++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999975 8999999999999999999999999999999999999865
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=454.93 Aligned_cols=290 Identities=32% Similarity=0.522 Sum_probs=234.1
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceEEEccCCCCCCCCCHHH
Q 000284 466 CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVRE 545 (1723)
Q Consensus 466 ~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 545 (1723)
+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......|+.+|||||++.+++.+||+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 46999999999999999999999999999999999999999999999999987655567888999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHH
Q 000284 546 HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625 (1723)
Q Consensus 546 ~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~ 625 (1723)
|+.+++..++.+..+.+++++++++.+||.+..++++++|||||||||+||+||+++|++|||||||+||||.+++.+|+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 99998888887777777889999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecCCC-hhhHHHHH----Hhh
Q 000284 626 LIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPD-ASAAADIV----YRH 699 (1723)
Q Consensus 626 ~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~~~-~~~~~~~~----~~~ 699 (1723)
+|++++ +|+|||++||++++++.+||||++|++|++++.|++.+++++++..+ +.+...... ........ ..+
T Consensus 166 ~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (302)
T TIGR01188 166 YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELGET 244 (302)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCce-EEEEecCchhhhhhhhHHHhhhhhc
Confidence 999986 58999999999999999999999999999999999999988876543 232221111 11000111 111
Q ss_pred CCCceEEeeeCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCCHHHHHHHHh
Q 000284 700 IPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVA 774 (1723)
Q Consensus 700 ~p~~~~~~~~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~is~ttLEevfl~~~ 774 (1723)
.+........++.+.+..+.. ......+++.+.. ....+.++.+...+|||+|+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~-----------------~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 245 GLGLLAVTVDSDRIKILVPDG-DETVPEIVEAAIR-----------------NGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred cccceeeeecCCeEEEEEcCc-hhHHHHHHHHHHH-----------------CCCceEEEEcCCCCHHHHHHHHh
Confidence 222222222234444444422 1223444444432 24678899999999999999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=458.93 Aligned_cols=204 Identities=23% Similarity=0.320 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
+++.++|+++.|.+ +..+.++++|.|+.++.++++||||||||||+|+++|++.|+.|.|.-.- .
T Consensus 388 pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~----------H 452 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS----------H 452 (614)
T ss_pred CeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc----------c
Confidence 57899999999964 23689999999999999999999999999999999999999999975432 2
Q ss_pred cceEEEecC--CCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1433 RLIGYCPQF--DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1433 ~~ig~~pQ~--~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.++++.-|+ ..+.-+.++-|++.- . .++....+.++.+|.++||+ +..+.+.++||+|||+||.+|+.++..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~---~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMP---K--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHH---h--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcC
Confidence 336666676 344445677776532 1 12223356778899999998 667899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE-EecChhHHH
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR-CIGSPQHLK 1581 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~-~~g~~~~l~ 1581 (1723)
|.+|+|||||+|||..+...+.+.|.++ .| +||++|||+..+..++++|.+..+|.+. ..|+...-+
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~---~G--gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF---PG--GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc---CC--ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999886 23 5999999999999999999999998864 456665443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=422.03 Aligned_cols=224 Identities=30% Similarity=0.479 Sum_probs=208.6
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD---- 1427 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~---- 1427 (1723)
++.|++++|+|+|+ ++.+++||||+|++||++||+||+|+|||||+|.|.|+++|++|+|.++|+++..-
T Consensus 6 ~~~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 46899999999995 46799999999999999999999999999999999999999999999999998652
Q ss_pred hHHhccceEEEecCCCCCCCCCHHHHHHHHHHH-cCCChhhHHHHHHHHHHHcCCccc-cCCCCCCCChhHHHHHHHHHH
Q 000284 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1428 ~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~-~g~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
..++|+++|+++|+.+||..+||+||+.|..+- ..++++.+++.+...|+.+||... +++.+++|||||++|++||||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 235789999999999999999999999997654 468888889999999999999876 999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
++.+|++|++||||+||||.+...+-++|++++++-| .|++++|||++++..+|||++++.+|+++..|+++++.+
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999986655 799999999999999999999999999999999999875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=451.39 Aligned_cols=297 Identities=29% Similarity=0.474 Sum_probs=241.0
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|++|+|+ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.....++++++|
T Consensus 3 l~~~~l~~~~~----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 78999999995 34699999999999999999999999999999999999999999999999998765567788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
||||++.+++.+||.||+.+++.++|.+.++.+++++++++.+||.+..++++++||||||||++||+||+++|++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999999888888776777788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEEEecCCCh
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDA 689 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~ 689 (1723)
|||+||||.+++++|++|+++++++|||++||++++++.+||||++|++|++++.|++.++++.++ +..+.+.......
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~~~~~~ 237 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEFEEQID 237 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEecCcch
Confidence 999999999999999999999878999999999999999999999999999999999999987744 3334433322111
Q ss_pred hhHHHHHHhhCCCceEEee-eCcEEEEEecCCCcchHHHHHHHHHHhhhhccccccccccccccCCCeeEEEecCCCHHH
Q 000284 690 SAAADIVYRHIPSALCVSE-VGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEE 768 (1723)
Q Consensus 690 ~~~~~~~~~~~p~~~~~~~-~~~~~~~~lp~~~~~~~~~l~~~le~~~~~~~~~~~~~~~~~~~~~~i~~~~is~ttLEe 768 (1723)
. ... +..+....... .++...+..+.. .....++.+.+.. ....+.++.....+|||
T Consensus 238 ~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~sLe~ 295 (301)
T TIGR03522 238 L---QLF-ETLEEISSVKNTGGNTWKLTFETP-NDTRPEIFKLAQQ-----------------KGLKLISLQQNEKNLEQ 295 (301)
T ss_pred h---HHH-hhccccceeeecCCCeEEEEEcCc-cchHHHHHHHHHH-----------------CCCceEEEEeCCCCHHH
Confidence 1 111 11111111111 223333332221 1122333333321 24568889999999999
Q ss_pred HHHHH
Q 000284 769 VFLRV 773 (1723)
Q Consensus 769 vfl~~ 773 (1723)
+|.++
T Consensus 296 ~~~~~ 300 (301)
T TIGR03522 296 VFREI 300 (301)
T ss_pred HHHHh
Confidence 99875
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=453.23 Aligned_cols=223 Identities=33% Similarity=0.533 Sum_probs=206.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
.++++|++|+|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 2 ~l~~~~l~~~~~------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEEC------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 478999999995 35699999999999999999999999999999999999999999999999998766566788
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
++||+||++.+++.+|+.||+.+.+..++.+.++..++++++++.+||.+..++++++|||||||||+||+||+++|++|
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999999888888766666677889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~ 1585 (1723)
||||||+||||.+++.+|+.|++++ + + +|||++||++++++.+||||++|++|++++.|++++++.+.+
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~-~-~-~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIG-K-D-KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK 224 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999984 3 4 689999999999999999999999999999999999987644
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=452.76 Aligned_cols=212 Identities=42% Similarity=0.719 Sum_probs=197.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceEEEecCCCCCCCCCHHH
Q 000284 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1452 (1723)
Q Consensus 1373 ~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e 1452 (1723)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.......+++|||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 56999999999999999999999999999999999999999999999999987655566788999999999999999999
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 000284 1453 HLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532 (1723)
Q Consensus 1453 ~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~ 1532 (1723)
|+.+++..++.+..+.++++.++++.++|.+..++++++|||||||||+||+||+++|++|||||||+||||.+++.+++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 99998888877666666778899999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCC
Q 000284 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586 (1723)
Q Consensus 1533 ~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~ 1586 (1723)
.|+++++ +| +|||++||++++++.+||||++|++|++++.|++++++++++.
T Consensus 166 ~l~~~~~-~g-~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~ 217 (302)
T TIGR01188 166 YIRALKE-EG-VTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217 (302)
T ss_pred HHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCC
Confidence 9999863 44 6899999999999999999999999999999999999887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=449.17 Aligned_cols=225 Identities=39% Similarity=0.632 Sum_probs=205.1
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
.+|+++||+|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 47999999999963 469999999999999999999999999999999999999999999999999865555567
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
+++||+||++.+++.+|++||+.+++..++.+..+..+++.++++.+++.+..++++++|||||||||+||+||+++|++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88999999999999999999999877766665555556778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~ 1585 (1723)
|||||||+||||.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++++.|+++++.+...
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~-~g-~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 227 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLA-RG-KTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQI 227 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcC
Confidence 999999999999999999999999864 44 589999999999999999999999999999999999987654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=442.69 Aligned_cols=231 Identities=38% Similarity=0.614 Sum_probs=210.2
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......|+.
T Consensus 3 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 3 VAIDLVGVSKSYGD----KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVA 78 (303)
T ss_pred cEEEEEeEEEEeCC----eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhc
Confidence 36999999999953 46999999999999999999999999999999999999999999999999886544566889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+||+||++.+++.+||+||+.+++...+.+..+.+++++++++.++|.+..++++++||||||||++||+||+.+|++||
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987766676666666788899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEEEEE
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 682 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~l~~ 682 (1723)
|||||+||||.+++.++++|++++ +|+|||++||++++++.+||||++|++|++++.|++.++++.+...+...+
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 234 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEI 234 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEE
Confidence 999999999999999999999985 589999999999999999999999999999999999999877655444433
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=446.06 Aligned_cols=223 Identities=30% Similarity=0.493 Sum_probs=210.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.|+++||+|.|++ ..||+|+||+|++||+++|+|||||||||||+||+|+.+||+|+|.|+|.+++.- ...+|+|
T Consensus 3 ~i~l~~v~K~yg~----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l-~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL-PPEKRGI 77 (338)
T ss_pred EEEEeeeEEEcCC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhHCCE
Confidence 6899999999953 2299999999999999999999999999999999999999999999999999752 2335789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
|+|||+..|||+|||+||+.|..++++.++++++++|+++++.++|++.+++++.+|||||||||++||||+.+|++++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCC
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 676 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~ 676 (1723)
|||+|+||+..|..+...|+++++ |.|+|++|||-.||..++|||++|++|++...|+|.++.++...
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999999999864 89999999999999999999999999999999999999876544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=419.87 Aligned_cols=204 Identities=28% Similarity=0.469 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..+++++++|.|++ ..||+|+||+|.+||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+. .....
T Consensus 2 ~~l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~----~p~~~ 73 (248)
T COG1116 2 ALLEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT----GPGPD 73 (248)
T ss_pred ceEEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC----CCCCC
Confidence 36899999999954 67999999999999999999999999999999999999999999999998873 23457
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||+|++.|+|.+||+||+.+.....|.++++.+++++++|+.+||.+..++++++|||||||||+|||||+.+|++|+
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANG 659 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G 659 (1723)
||||+++||+.+|..+.+.|.++. .++||+++|||.+||-.++|||++|.++
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999998873 4899999999999999999999999984
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=404.14 Aligned_cols=222 Identities=33% Similarity=0.554 Sum_probs=203.5
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh--HH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~--~~ 1430 (1723)
..|.++||.|+|+ ++.+++++||+|++||++||+|||||||||+|.|++|+.+|++|+|.++|.|++..+ .+
T Consensus 3 ~~L~a~~l~K~y~------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYK------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhC------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 4689999999996 467999999999999999999999999999999999999999999999999998754 45
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh--hHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY--RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
+|..|||+||++.+|..+||+||+.....++..+.+ +.+.+.+++|++|++.+.++++..+||||||||+.|||||+.
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc
Confidence 677899999999999999999999988777664433 344457799999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+|+.++||||++|+||.+...+.++|+.++ ++| ..|++|-|+..|...+|||..||.+|++.+.|+|+++.+
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rg-iGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRG-IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHH-hCC-ceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999996 444 689999999999999999999999999999999999865
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=441.07 Aligned_cols=226 Identities=32% Similarity=0.499 Sum_probs=211.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
..|+++||+|.|++ ..+|+++||+|++||+++|+||||||||||||||+|+++|++|+|+|+|.+++.-+. .+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hH
Confidence 36899999999974 229999999999999999999999999999999999999999999999999987322 34
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
|.||+|+|+.+|||.|||+||+.|..+.++.+++++++++++..+.++|++..++++.+|||||||||++||||+.+|++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCC
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~ 1586 (1723)
++||||.|.||+..|..+...|+++.++-| .|+|++|||..|+..++|||++|++|++...|+|.++.++..+
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~-~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcC-CcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999999999999976554 7899999999999999999999999999999999999876544
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=446.47 Aligned_cols=221 Identities=29% Similarity=0.503 Sum_probs=206.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++||+|.|+ +..||+|+||+|++||+++|||||||||||||+||+|+..|++|+|.++|+++.. ....+|.
T Consensus 4 ~~l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~-lpp~kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD-VPPEKRP 78 (352)
T ss_pred ceEEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhhcc
Confidence 4799999999995 4679999999999999999999999999999999999999999999999999975 3345678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
||+|||+..|||+|||+||+.|+.++++ ..+++++++++++|+.++|.+..++++++|||||||||+|||||+.+|++|
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 9999999999999999999999998655 455778999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+||||.|+||..-|.++..-|+++. .|.|.|++|||-+||..++|||+||++|+|...|+|.++-.+
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999885 399999999999999999999999999999999999888543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=402.34 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=203.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cH-HHHhc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIRK 526 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r~ 526 (1723)
.+.++||.|+|+ ++++++|+||+|++|||+||+|||||||||++.|++|+.+|++|+|.++|.|++. ++ .+.|.
T Consensus 4 ~L~a~~l~K~y~----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 4 TLVAENLAKSYK----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred EEEehhhhHhhC----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 588999999995 4579999999999999999999999999999999999999999999999999985 33 45678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEE--LLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~--~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
.|||+||++..|..|||+|||....+.+..+.+ +.+.+++++|+++++.+.++++..+||||||||+.|||||+.+|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999999999999999988887765544 445568899999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+++||||++|+||.+...+.++++.++ .|..|++|.|+..|...+|||.+||++|++.+.|+|+++-+
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999998 48999999999999999999999999999999999988754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=442.25 Aligned_cols=223 Identities=30% Similarity=0.511 Sum_probs=208.1
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
..++++||+|.|+ +..||+|+||+|++||+++||||+|||||||||||+|+..|++|+|.++|+++..-+. .+
T Consensus 4 ~~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~k 76 (352)
T COG3842 4 PALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EK 76 (352)
T ss_pred ceEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hh
Confidence 5799999999996 4679999999999999999999999999999999999999999999999999987443 46
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
|.||+|+|+.+|||+|||+||+.|..+.++ .+++++++++.++|+.++|.+++++++.+|||||||||+|||||+.+|+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence 779999999999999999999999988655 4446688999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|||||||.++||..-|..+..-|+++.++.| .|.|++|||-+|+..++|||++|++|+|...|+|+++..+
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g-iT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELG-ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999987665 7899999999999999999999999999999999998654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=412.98 Aligned_cols=206 Identities=29% Similarity=0.479 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
..+++++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+.. ..
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36899999999963 679999999999999999999999999999999999999999999999998843 24
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
..+|||+|++.|+|.+||+||+.+.....|.++++.++++.++|+.+||.+..++++++|||||||||+|||||+.+|+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 56999999999999999999999999988888777788999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECC
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G 1569 (1723)
|+||||+++||+.+|..+++.+.++.++.+ .||+++|||.+||-.++|||++|.++
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999986665 69999999999999999999999984
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=474.89 Aligned_cols=217 Identities=28% Similarity=0.426 Sum_probs=196.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEccccCCccHHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITADMDEI 524 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~~~~~~ 524 (1723)
..++++||++.|+.+++.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~ 834 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SF 834 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hh
Confidence 358999999999754445679999999999999999999999999999999999998 789999999998752 46
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCcccccccC----CCChhHHHHHHHHH
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKG---VKEELLESVVAEMVDEVGLADKVNIVVR----ALSGGMKRKLSLGI 597 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g---~~~~~~~~~v~~~l~~~~l~~~~~~~~~----~LSgGqkqrl~lA~ 597 (1723)
|+.+|||+|++.+++.+||+|||.+.+.++. .+.++.+++++++++.+||.+..|+.++ .|||||||||+||+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 7889999999999999999999999887763 4455667789999999999998999887 79999999999999
Q ss_pred HHhcCCc-EeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHH-HHhhcCEEEEEeCC-EEEEecCH
Q 000284 598 ALIGDSK-VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDE-AEELGDRIAIMANG-SLKCCGSS 667 (1723)
Q Consensus 598 al~~~p~-vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e-~~~l~dri~il~~G-~l~~~Gs~ 667 (1723)
||+.+|+ ||+|||||+|||+.+++.++++|++++ +|+|||+|||+++. +...+||+++|++| +++..|++
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999997 999999999999999999999999985 68999999999986 45679999999997 99999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=443.18 Aligned_cols=224 Identities=31% Similarity=0.456 Sum_probs=205.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~ 524 (1723)
+|+++||+|.|+++++.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 37899999999643223579999999999999999999999999999999999999999999999999853 22346
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
|++|||+||++.+++.+||+||+.+.....+.++++.++++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999998877777777888899999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+|||||||++|||.+++.++++|+++++ |.|||++||+|+++..+||||++|++|++++.|++.++..
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999853 8999999999999999999999999999999999877643
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=420.84 Aligned_cols=221 Identities=30% Similarity=0.470 Sum_probs=199.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+++++||+..|+ ++.+++|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ..+++.
T Consensus 2 ~L~~~~ls~~y~------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYG------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEEC------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 589999999996 3679999999999999999999999999999999999999999999999999977 567788
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHH----HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYAR----IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~----~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
+++||+||.+.....+||+|-+.+... ..+...++.++.+.+.|+.+|+.+.++|.+.+||||||||+.|||||++
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc
Confidence 899999999877778999998876422 1122233344578899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+|++|+|||||++||+..+.+++++++++++++| .|||+++||++.+.++|||+++|++|++++.|+|+++.
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999986655 68999999999999999999999999999999987654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=441.07 Aligned_cols=226 Identities=27% Similarity=0.466 Sum_probs=205.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+|+++||+|+|+++. +.+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . .
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 488999999996321 134699999999999999999999999999999999999999999999999998652 2 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..|++|||+||+..+++.+||+||+.+.....+.++.+.++++.++++.+||.+..++++.+|||||||||+|||||+.+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999877777777767778889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+||||.+++.++++|++++++.| .|||++||+|+++.++||||++|++|++++.|+++++..
T Consensus 159 P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 159 PKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999975445 689999999999999999999999999999999988854
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=417.11 Aligned_cols=226 Identities=26% Similarity=0.442 Sum_probs=206.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccc---cCCccHHHHh
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK---NITADMDEIR 525 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~---~i~~~~~~~r 525 (1723)
.|+++|++|.|++ ..|++|+|++|+.||.++|+|||||||||||++|+|+..|++|+|.++|. |.+. .....
T Consensus 2 ~i~i~~~~~~~~~----~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA----FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRD 76 (345)
T ss_pred ceeehhhhhhccc----ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhh
Confidence 4789999999954 56999999999999999999999999999999999999999999999999 6543 23334
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKG--VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g--~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
++||+++||..||++|||.||++|+.+.+. .++.+++.++.++|+.++|+...++++.+||||||||++|||||+.+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999987663 345678899999999999999999999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCcEE
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYT 679 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~gy~ 679 (1723)
+||+||||+++||+.-|.++...|+++.+ |.|++++|||.+|+.++||||++|++|+|...|++.+.-...+.-+.
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV 234 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFV 234 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccce
Confidence 99999999999999999999999999863 89999999999999999999999999999999999998766655443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=464.16 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=191.9
Q ss_pred eEEEEeEEEEecCcC---------CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEccccC
Q 000284 449 CIQIRKLHKVYATKR---------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP--TTGDALVFGKNI 517 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~---------~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p--~~G~i~i~g~~i 517 (1723)
.+..+||+...+.+. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ ++|+|.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998875321 235799999999999999999999999999999999999874 789999999876
Q ss_pred CccHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCccccccc-----CCCChhH
Q 000284 518 TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEELLESVVAEMVDEVGLADKVNIVV-----RALSGGM 589 (1723)
Q Consensus 518 ~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSgGq 589 (1723)
.. ...++.+|||+|++.+++.+||+|||.+.+.++ ..+.++.+++++++++.+||.+..|+.+ +.|||||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 42 245678999999999999999999999987654 2344555678999999999998888886 5899999
Q ss_pred HHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHH-HHHhhcCEEEEEeC-CEEEEecC
Q 000284 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD-EAEELGDRIAIMAN-GSLKCCGS 666 (1723)
Q Consensus 590 kqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~-e~~~l~dri~il~~-G~l~~~Gs 666 (1723)
||||+||+||+.+|++|+|||||+|||+.++..++++|++++ +|+|||+|||+++ ++..++||+++|++ |++++.|+
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 999999999999999999999999999999999999999986 5899999999998 57789999999996 89999998
Q ss_pred H
Q 000284 667 S 667 (1723)
Q Consensus 667 ~ 667 (1723)
+
T Consensus 1105 ~ 1105 (1470)
T PLN03140 1105 L 1105 (1470)
T ss_pred c
Confidence 5
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=400.80 Aligned_cols=224 Identities=27% Similarity=0.449 Sum_probs=204.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----h
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----P 1428 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~----~ 1428 (1723)
.+|+++||+|.|++ ++.+|+||||+|++||+++|+|++|||||||+|+|.|+..|++|+|.++|.++... .
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47999999999974 46799999999999999999999999999999999999999999999999988652 3
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHH--------HHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHH
Q 000284 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYA--------RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~--------~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl 1500 (1723)
.+.|++|||++|.+.|.+.+||.+|+..+. .+-|+..++.+..+.+.|+++|+.+++.+++++|||||||||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 457889999999999999999999987632 234666566677888999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|+++|.|||+++|||.+.+.+++.|++++++.| .|||++.|+++.+.++||||+-|++|+++.+|+++++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 999999999999999999999999999999999999987776 6899999999999999999999999999999999886
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
..
T Consensus 236 ~~ 237 (258)
T COG3638 236 TD 237 (258)
T ss_pred hH
Confidence 54
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=416.14 Aligned_cols=231 Identities=31% Similarity=0.479 Sum_probs=212.8
Q ss_pred ceEEEEeEEEEecCc--------------------CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 000284 448 RCIQIRKLHKVYATK--------------------RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 507 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~--------------------~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~ 507 (1723)
..|+++||+|.|+.+ .+....++|+||+|++|||++|+|-+|||||||+++|.++++||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 358999999999752 123457899999999999999999999999999999999999999
Q ss_pred ceEEEccccCCc----cHHHH-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000284 508 GDALVFGKNITA----DMDEI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582 (1723)
Q Consensus 508 G~i~i~g~~i~~----~~~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~ 582 (1723)
|+|.++|.|+.+ ...+. |+++++|+|+..|+|+.||.||..|+.+++|+++++.++++.+.|+.+||....++++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 999999999853 33444 4779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q 000284 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGS 660 (1723)
Q Consensus 583 ~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~ 660 (1723)
++|||||||||.|||||+.+|+||++|||+|+|||--|.++.+-|.++.+ .+||+++|||+|||.+++|||+||++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999999998853 7999999999999999999999999999
Q ss_pred EEEecCHHHHHhhhCCcE
Q 000284 661 LKCCGSSLFLKHQYGVGY 678 (1723)
Q Consensus 661 l~~~Gs~~~Lk~~~g~gy 678 (1723)
++.+|+|+++-......|
T Consensus 243 ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 243 IVQVGTPEEILLNPANDY 260 (386)
T ss_pred EEEeCCHHHHHcCccHHH
Confidence 999999999876554444
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=413.29 Aligned_cols=226 Identities=26% Similarity=0.445 Sum_probs=205.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCe---eCCCChHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGK---DIRSDPKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~---~i~~~~~~ 1430 (1723)
+|++++++|.|+ ...|++|||++|+.||.+||+||||||||||+|+|+|++.|++|+|.++|+ |.+. ...
T Consensus 2 ~i~i~~~~~~~~------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFG------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhcc------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 578999999995 467999999999999999999999999999999999999999999999999 6544 223
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
..++|||++|+.+||+.|||.+|+.|..+.+.. ++.+++.++.++|+.+.|+..+++++.+|||||||||++||||+-
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 346799999999999999999999998876532 345678899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcCCe
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~~~ 1587 (1723)
+|++|+||||+++||..-|.++...|+++..+-| .|.+++|||++|+.++||||++|++|+|...|+++++...-...
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999999976555 68999999999999999999999999999999999997665443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=415.74 Aligned_cols=223 Identities=30% Similarity=0.477 Sum_probs=208.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC--ccHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT--ADMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~--~~~~~~r 525 (1723)
..++++++++.|+++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+..++|
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~ 78 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhh
Confidence 368899999999754 57999999999999999999999999999999999999999999999999986 5677899
Q ss_pred cceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 KGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
+++|+|+|+|. .+-.-||.|.++|+....|++.++++++++++++.+|+.+.+++++.+|||||||||+||.+|+.+|+
T Consensus 79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 99999999983 44456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+||||||||||||.++++++++++++++ |+|||++|||++++..+|||+++|++|+++.+|+|.++.+.
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999963 68999999999999999999999999999999998776543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=412.53 Aligned_cols=218 Identities=30% Similarity=0.453 Sum_probs=190.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
.+|+++||++.|++ . +||+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|+++..... +
T Consensus 3 ~~i~v~nl~v~y~~-----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN-----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC-----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 57999999999963 2 59999999999999999999999999999999999999999999999998754322 4
Q ss_pred cceEEEecCC---CCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000284 1433 RLIGYCPQFD---ALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1433 ~~ig~~pQ~~---~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
.+||||||.. .-|| +||+|-+.+....+ +...++.++.++++|+++|+.+++++++++|||||+||+.||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 6799999953 3344 79999988742211 12223346789999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+.+|++|+|||||+|+|+.++..+.++|++++++ | +||+++|||++.+.++||||+.|+ +++.|.|++++..+
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g-~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G-KTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999999754 5 699999999999999999999985 68999999987643
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=404.20 Aligned_cols=222 Identities=30% Similarity=0.483 Sum_probs=203.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 525 (1723)
..+++++|+|+| |..+||+|+||++++|||++|+|||||||||++|+|+|.++||+|+|.++|+||+. .....|
T Consensus 3 ~lL~v~~l~k~F----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar 78 (250)
T COG0411 3 PLLEVRGLSKRF----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78 (250)
T ss_pred ceeeeccceeec----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence 357899999999 45789999999999999999999999999999999999999999999999999975 334467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHH
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKG------------VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g------------~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl 593 (1723)
..|+--+|...+|++|||.||+......+. ...++..+++.++|+.+||.+..++++++||+||||||
T Consensus 79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 889999999999999999999988654221 13467788899999999999999999999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
.|||||+.+|++|+||||.+||.|....++.++|+++++ |.||+++.|||+.+..+||||+||+.|+++++|+|++..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999974 699999999999999999999999999999999998876
Q ss_pred hh
Q 000284 672 HQ 673 (1723)
Q Consensus 672 ~~ 673 (1723)
+.
T Consensus 239 ~d 240 (250)
T COG0411 239 NN 240 (250)
T ss_pred cC
Confidence 53
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=384.74 Aligned_cols=214 Identities=27% Similarity=0.442 Sum_probs=203.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~ 524 (1723)
+|+++||+|.|++. ..||+|+||+|++||++.|+||+||||||++++|.+..+||+|+|.++|+|+.. +..-+
T Consensus 1 mI~f~~V~k~Y~~g---~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG---REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC---chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence 48899999999753 579999999999999999999999999999999999999999999999999853 55678
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
|++||+|+|+..|.+++||+||++|..++.|.+++++++++.++|+.+||.++.+..+.+||||||||++||||++.+|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
+||-||||.+|||....++++++.++. .|.|||+.|||.+.++.+--|++.+++|+++...
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999996 5999999999999999999999999999997543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=399.07 Aligned_cols=226 Identities=28% Similarity=0.482 Sum_probs=203.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC--ChHH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS--DPKA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~--~~~~ 1430 (1723)
.+|+++||++.|+++. ....||++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|.++.. ..+.
T Consensus 2 ~~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 4799999999997643 12369999999999999999999999999999999999999999999999987654 2235
Q ss_pred hccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1431 ARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
.++.|.+|+||+ +|.|..||++.|.-.....|.++.+ +++.++|+.+||. ..+++++.+|||||+||+||||||+
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 677899999996 7899999999998777777776543 4588999999996 5799999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
-+|++||||||||+||+..+.++|+++.+++++.+ .|.|++|||+..++.+||||+||++|++++.++.+++.+.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~-lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC-ceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999999999976654 7999999999999999999999999999999999998765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=401.68 Aligned_cols=214 Identities=30% Similarity=0.483 Sum_probs=192.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh----H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~----~ 1429 (1723)
+++++||+|.|+.+.. ...||+++||+|++||+++|+||+||||||||++|.|+.+||+|.|+++|.++.... .
T Consensus 1 ~i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 3679999999976432 257999999999999999999999999999999999999999999999999987522 2
Q ss_pred H-hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccC-CCCCCCChhHHHHHHHHHHHh
Q 000284 1430 A-ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1430 ~-~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
. .+++|||++|+..|.+.+||+||+.+...+.+.+....++.+.++++.+||.+..+ +++.+|||||||||+|||||+
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 2 35679999999999999999999999888888876556778888999999997766 889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
.+|++|+.||||.+||..+.+.+++++++++++.| +|||++|||.+.+. .|||++.|.+|++
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g-~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERG-KTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 99999999999999999999999999999976655 68999999988776 7999999999994
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=411.69 Aligned_cols=228 Identities=27% Similarity=0.437 Sum_probs=204.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++||+..|+ ++.+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ...++.+.
T Consensus 2 ~L~~~~ls~~y~----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh
Confidence 588999999995 4579999999999999999999999999999999999999999999999999965 66778899
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHh--c--CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVL--K--GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~--~--g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
+||+||.+.....+||+|-+.++..- . +...++.++.++++|+.+|+.+..++.+.+||||||||+.|||||+++|
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 99999999888889999999876432 1 2223444557999999999999999999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHH------HHHhhhC
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL------FLKHQYG 675 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~------~Lk~~~g 675 (1723)
++|+|||||++||....-+++++++++. +|+|||+++||++.|.++|||+++|++|++.+.|+|. .|++-||
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence 9999999999999999999999999986 4899999999999999999999999999999999975 4667777
Q ss_pred CcEEE
Q 000284 676 VGYTL 680 (1723)
Q Consensus 676 ~gy~l 680 (1723)
.....
T Consensus 238 v~~~~ 242 (258)
T COG1120 238 VDADV 242 (258)
T ss_pred CceEE
Confidence 66543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=402.33 Aligned_cols=211 Identities=28% Similarity=0.555 Sum_probs=193.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHHH-
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI- 524 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~- 524 (1723)
++++||+|.|..+.....||+++||+|++||+++|+||+||||||||++|.|+.+||+|+|.++|.|+.. .....
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6799999999865445689999999999999999999999999999999999999999999999999863 23344
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCChhHHHHHHHHHHHhcCC
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN-IVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~-~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
|++|||++|+..|.+.+||.||+.+...+.+.+....+++++++++.+||.+..+ +++.+|||||||||+|||||+.+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 4779999999999999999999999998888876667788999999999997766 889999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
++++.||||.+||..+.+.++++++++. .|+|||++|||.+.|. .|||++.|.+|++
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 9999999999999999999999999984 4899999999999997 6999999999994
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=436.21 Aligned_cols=224 Identities=29% Similarity=0.449 Sum_probs=206.5
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
.++|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..
T Consensus 4 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQ 76 (351)
T ss_pred CcEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH
Confidence 357999999999963 46999999999999999999999999999999999999999999999999986533 23
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+++||||||+..+|+.+||+||+.+..+.++.++.+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999998877777777777889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|||||||+|||+.+|+.+++.|+++.++.| +|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFN-ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999965444 6899999999999999999999999999999999998654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=389.83 Aligned_cols=219 Identities=30% Similarity=0.467 Sum_probs=204.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-----ceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT-----GDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~-----G~i~i~g~~i~~--- 519 (1723)
..++++||++.|+ .+.||+|||++|++++|+||+||+||||||+|+++..+....+ |+|.++|+||..
T Consensus 6 ~~~~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 6 PAIEVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred ceeEecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence 5799999999995 4579999999999999999999999999999999999988764 999999999964
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
+..++|++||+|+|.|.-|| +|++||+.++.++.|...+++++.|++.|+...|- +.+++.+..|||||||||||
T Consensus 82 d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred CHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 57889999999999999999 89999999999999988788999999999998874 45678888999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||+-+|+||+||||||+|||.+...+.++|.++++.-|||++||+|..|.+++|+.+++..|++++.|+...+-
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=394.85 Aligned_cols=222 Identities=28% Similarity=0.489 Sum_probs=204.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~ 523 (1723)
.+|+++||+|.|++ ++.||+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|.++.. ...+
T Consensus 2 ~~i~~~nl~k~yp~---~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYPG---GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecCC---CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHH
Confidence 36999999999973 4579999999999999999999999999999999999999999999999998853 5677
Q ss_pred HhcceEEEccCCCCCCCCCHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHH
Q 000284 524 IRKGLGVCPQYDILFPELTVREHLEMFA--------VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~--------~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~l 595 (1723)
.|+++||++|++.|.+.+||.+|+..+. .+-|+..++.+.++-++|+.+|+.++..+++++|||||||||+|
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 8999999999999999999999997643 23466656667888999999999999999999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|++++-|||+|+|||.+.+.+++.|+++. .|.|+|++-|++|.|.++||||+-|++|+++..|++.+|.+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999999999999999999999999984 58999999999999999999999999999999999876643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=382.89 Aligned_cols=216 Identities=31% Similarity=0.457 Sum_probs=203.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----hH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----PK 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~----~~ 1429 (1723)
||+++|++|.|++ .+.||+||||+|++||..-|+||+||||||++|+|.+..+||+|+|.++|+|+.+- ..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5889999999985 36799999999999999999999999999999999999999999999999998652 23
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
-+|++||+|+||.-|.++.||.||+.+..++.|.++.++++++.+.|+.+||.+.++..+.+|||||||||+||||++++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|++||.||||-+|||....++++++.+++ +.| +|||+.|||.+.+..+--|++.+++|+++....
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeein-r~G-tTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLG-TTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHh-hcC-cEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999996 455 899999999999999999999999999987653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=436.64 Aligned_cols=223 Identities=30% Similarity=0.467 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
.+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HH
Confidence 36999999999963 458999999999999999999999999999999999999999999999999865333 35
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
+.||||||+..+|+.+||+||+.+..+.++.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 78999999999999999999999987777777777778899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|||||||+|||+.+|+.+++.|+++.++.| +|+|++|||++|+..+||||++|++|++++.|+++++.++
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~~-~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 156 LLLDEPLSALDARVREHLRTEIRQLQRRLG-VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999865444 6899999999999999999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=437.04 Aligned_cols=221 Identities=27% Similarity=0.441 Sum_probs=205.6
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ..++.
T Consensus 3 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQKRD 77 (353)
T ss_pred cEEEEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCC
Confidence 36999999999953 46999999999999999999999999999999999999999999999999886422 24678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||||++.+|+++||+||+.|+...++.++++.+++++++++.+||.+..++++.+|||||||||+|||||+.+|+++|
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998877777778888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||||++||+.+|+++++.|+++.+ |.|+|++|||++|+..+||||++|++|++++.|++.++.++
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999853 89999999999999999999999999999999999888654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=436.38 Aligned_cols=223 Identities=28% Similarity=0.435 Sum_probs=204.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+|+++|++|+|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++...+. .++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHC
Confidence 5899999999942 2469999999999999999999999999999999999999999999999999865332 347
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+||||||++.+|+.+||+||+.+..+.++.++.+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999998877767776667778899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
||||||+|||+.+++.+++.|+++.++.| +|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLK-TTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999865444 6899999999999999999999999999999999998654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=436.27 Aligned_cols=221 Identities=27% Similarity=0.432 Sum_probs=206.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++
T Consensus 5 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~-~~~~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGS----NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR-SIQQRD 79 (351)
T ss_pred cEEEEEeEEEEECC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC-CHHHCC
Confidence 47999999999953 4699999999999999999999999999999999999999999999999988642 234578
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||||++.+|+++||+||+.|..+.++.++++.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999887788888888999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||||+|||+.+|+++++.|+++.+ |+|+|++|||++|+..+||||++|++|+++..|++.++.++
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999853 89999999999999999999999999999999999888654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=409.63 Aligned_cols=225 Identities=28% Similarity=0.471 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCC--CChHH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR--SDPKA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~--~~~~~ 1430 (1723)
.+++++++++.|+++ ..+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 468999999999752 57999999999999999999999999999999999999999999999999987 45677
Q ss_pred hccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.|+++|||+|++ ..+-.-||.|.+.|.....|++.+++++++.+.++.+++.+.+++++.+|||||||||+||.+|+.+
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 899999999996 2334569999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|++|+|||||+||||.+++.+++.++++.++ ++.|||++|||++++..+|||+++|++|+++..|+|+++.+.
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999754 346899999999999999999999999999999999888764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=434.70 Aligned_cols=223 Identities=27% Similarity=0.417 Sum_probs=204.7
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc--eEEEEcCeeCCCChHHh
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD--GTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~--G~i~i~G~~i~~~~~~~ 1431 (1723)
.|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+. .
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~-~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP-H 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH-H
Confidence 4889999999963 469999999999999999999999999999999999999999 999999999865332 3
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
++.|||++|++.+|+.+||+||+.+..+.++.++.+.++++.++++.++|.+..++++++|||||||||+|||||+.+|+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56799999999999999999999998777777777777889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|||||||+|||+.+|+.+++.|+++.++.+++|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999986543136899999999999999999999999999999999999765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=399.06 Aligned_cols=224 Identities=32% Similarity=0.504 Sum_probs=202.8
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh--HH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~--~~ 1430 (1723)
+++++++|+|+||+ ..||+||||+|++||++||+|||||||||++++|+|.++|++|+|.++|++|...+ ..
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 46899999999964 67999999999999999999999999999999999999999999999999998733 33
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHc-------CC-----ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIK-------GV-----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-------g~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq 1498 (1723)
.|..|+--+|...+|++|||.||+......+ +. .+.+..+++.++|+.+||.+.+++++++||+||||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 5677889999999999999999998754422 11 24556778889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
||.|||||+.+|++|+||||.+||.|....++.+.|++++++ ++.||+++-|||+.+..+||||++|+.|+++++|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999999999743 4579999999999999999999999999999999999
Q ss_pred HHHhh
Q 000284 1579 HLKTR 1583 (1723)
Q Consensus 1579 ~l~~~ 1583 (1723)
++.+.
T Consensus 236 eV~~d 240 (250)
T COG0411 236 EVRNN 240 (250)
T ss_pred HHhcC
Confidence 98753
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=436.15 Aligned_cols=220 Identities=27% Similarity=0.433 Sum_probs=204.8
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc--ceEEEccccCCccHHHHhc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT--GDALVFGKNITADMDEIRK 526 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~--G~i~i~g~~i~~~~~~~r~ 526 (1723)
.++++||+|.|++ +.+|+|+||++.+||+++|+||||||||||+++|+|+.+|++ |+|.++|.++... ...++
T Consensus 5 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~-~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA-PPHKR 79 (362)
T ss_pred EEEEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-CHHHC
Confidence 5899999999953 469999999999999999999999999999999999999999 9999999988532 22457
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
.||||+|++.+|+++||+||+.|+...++.++++.+++++++++.+||.+..++++++|||||||||+|||||+.+|++|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999999887777887788889999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHhC---CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIKK---GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~~---~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
||||||+|||+.+|+++++.|+++.+ |.|+|++|||++|+..+||||++|++|+++..|++.++.++
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998853 78999999999999999999999999999999999988654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=396.87 Aligned_cols=224 Identities=30% Similarity=0.449 Sum_probs=203.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 525 (1723)
..++++||++.|+.+.....||+||||++.+||++||+|++|||||||.++|+|+.+|++|+|+++|..... .....+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 368999999999875544569999999999999999999999999999999999999999999999987643 233567
Q ss_pred cceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHHHHHHHHHhcC
Q 000284 526 KGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 526 ~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
+.|.+||||| .|.|..||.+.|.-.....|.++. ++++.++|+.+||.+ .+++++.+|||||+||+||||||+-+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 8899999998 589999999999888887777654 455999999999985 57999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
|++||||||||+||+....++|++|.++++ +-|+|++|||+..++.+||||+||++|++++.++..+++..
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999975 56999999999999999999999999999999999888765
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=434.78 Aligned_cols=221 Identities=24% Similarity=0.411 Sum_probs=204.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.++++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.|
T Consensus 3 ~l~i~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG---KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADRDI 78 (356)
T ss_pred EEEEEeEEEEeCC---CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCE
Confidence 5899999999942 246999999999999999999999999999999999999999999999999886422 235789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
|||||++.+|+++||+||+.+..+.++.++.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999988777777777788999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
||||++||+.+|+.+++.|+++.+ |.|+|++|||++|+..+||||++|++|+++..|++.++.++
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999853 89999999999999999999999999999999999888553
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=411.64 Aligned_cols=221 Identities=32% Similarity=0.531 Sum_probs=197.4
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---HH
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---KA 1430 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~~ 1430 (1723)
|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999953 4699999999999999999999999999999999999999999999999988642 2 34
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.++.|||+||++.+++.+|++||+.+..... +.+.++..+++.++++.+++.+..++++++|||||||||+||+||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~ 154 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 5778999999999999999999998765433 344445566788899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|++++++.| +|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999864334 589999999999999999999999999999999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=407.64 Aligned_cols=219 Identities=38% Similarity=0.599 Sum_probs=198.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999953 46999999999999999999999999999999999999999999999999886544456678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.+....++.+..+.++++.++++.+++.+..++++.+|||||||||+||+||+.+|++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987766666555556678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999864434 5899999999999999999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=403.16 Aligned_cols=215 Identities=28% Similarity=0.479 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..|+++||++.|++ . .||+||||++++|++++|+||||||||||+++|.|+++|++|+|.+.|.++..... +.+
T Consensus 3 ~~i~v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--RLR 76 (254)
T ss_pred cEEEEeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--CCe
Confidence 47999999999953 2 59999999999999999999999999999999999999999999999987754322 467
Q ss_pred eEEEccCC---CCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000284 528 LGVCPQYD---ILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 528 ig~~~Q~~---~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
||||||.. .-|| +||+|-+.++..-+ +...+..+++++++|+.+|+.+.+++++++|||||+||+.|||||+
T Consensus 77 IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 77 IGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred EEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 99999964 3455 69999998864322 1122334789999999999999999999999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
.+|++|+|||||+|+|+.++..+.++|+++++ |+|||++|||++.+..++|||+.|+ +++.|.|++++.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999974 9999999999999999999999985 688999998543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=431.42 Aligned_cols=225 Identities=32% Similarity=0.484 Sum_probs=204.8
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c---HHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~ 524 (1723)
+|+++||+|.|+.+.+.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. + ....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 37899999999632223579999999999999999999999999999999999999999999999998853 2 2345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
|+++||+||++.+++.+||+||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999999998777777776777889999999999998999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++...
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999985 3 89999999999999999999999999999999999888654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=430.27 Aligned_cols=227 Identities=30% Similarity=0.513 Sum_probs=203.8
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+|+++||+|+|+++. +.+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... . .
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999996311 135699999999999999999999999999999999999999999999999998642 2 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..+++|||+||++.+++.+|++||+.+.....+.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 34678999999999999999999999877766766666667788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|+++++...
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999865444 6899999999999999999999999999999999988654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=407.41 Aligned_cols=217 Identities=39% Similarity=0.603 Sum_probs=199.0
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.+|
T Consensus 1 i~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC----EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999987544445677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+||+||+.+.....+.+.++.+++++++++.+||.+..++++.+||||||||++||+||+.+|+++|||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998877667666666778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999985 3 89999999999999999999999999999999887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=411.02 Aligned_cols=219 Identities=32% Similarity=0.556 Sum_probs=198.2
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c---HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 525 (1723)
|+++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. + ....|
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGG----RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHh
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 2 24567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
+.+||+||++.+++.+||+||+.+..... +.+.++.++++.++++.+||.+..++++++|||||||||+|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999998875433 45556667788999999999988899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+|||||||+|||+.+++.++++|++++ .|+|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999985 38999999999999999999999999999999999877643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=430.48 Aligned_cols=224 Identities=28% Similarity=0.482 Sum_probs=205.1
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
.++|+++|++|.|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA-E 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-H
Confidence 357999999999963 459999999999999999999999999999999999999999999999999865332 3
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+++|||+||++.+|+.+||+||+.+..+.++.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56799999999999999999999987776677666667788999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|||||||+|||+.+|+.+++.|+++.++.| +|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLG-ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999875444 6899999999999999999999999999999999998754
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=418.88 Aligned_cols=200 Identities=22% Similarity=0.307 Sum_probs=169.9
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHH
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~ 1430 (1723)
..+.+++.++++.|..+ ..+.+.+++++++--+..+++|+||+||||++|++.|...|+.|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~----~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS----EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--------- 425 (582)
T ss_pred CCCeeEEEeeeccCCCc----chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------
Confidence 34689999999999643 22689999999999999999999999999999999999999999987643
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
|++|+|..|+..=+-++.|.+--.+.+...|.++ +.+++.+..+||. +.+.+++.+||||||-||++|.....+
T Consensus 426 -r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 426 -RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred -cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCC
Confidence 5679999998544444555543333344456644 4566789999996 667788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEE
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1573 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~ 1573 (1723)
|.+|+|||||++||..+-..+-++|+.+ +| .||++|||.+++..+|+.+++.++|++.-
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAKALKNF---NG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHHHHHhc---CC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999987 23 49999999999999999999999999975
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=393.78 Aligned_cols=241 Identities=31% Similarity=0.452 Sum_probs=217.9
Q ss_pred eEEEEeEEEEcCCCC---------------ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 000284 1354 IIYLRNLRKVYPGGK---------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~---------------~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~ 1418 (1723)
++.++||+|.|.-.. +.....||+||||+|++||++|++|+||||||||+|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 577888888885321 11234699999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCChHHhccceEEEe-cCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHH
Q 000284 1419 IFGKDIRSDPKAARRLIGYCP-QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1419 i~G~~i~~~~~~~~~~ig~~p-Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k 1497 (1723)
++|++..++.+..-+++|+|. |...++.++.+.|.+.....++.++.++.+++.+.+.+.++|++..+.+++.||-|||
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqR 162 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHH
Confidence 999998877777777898875 5677888888999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
+|+.||.||+++|+||+|||||-|||..++..+++.|++++++++ +||++|||+|+.++++||||+.|++|+++..|+.
T Consensus 163 mraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~-aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ-ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred HHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhC-ceEEEEecchhhHHHhhhheEEeeCCcEeecccH
Confidence 999999999999999999999999999999999999999987765 7999999999999999999999999999999999
Q ss_pred hHHHhhcCCeEEEEEeec
Q 000284 1578 QHLKTRFGNFLELEVKPT 1595 (1723)
Q Consensus 1578 ~~l~~~~~~~~~~~~~~~ 1595 (1723)
.+|+.+|+...++.+...
T Consensus 242 ~~l~~~f~~~k~~~~el~ 259 (325)
T COG4586 242 AQLQEQFGPYKEFSVELK 259 (325)
T ss_pred HHHHHHhCCceEEEEEEc
Confidence 999999998877765543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=402.15 Aligned_cols=232 Identities=28% Similarity=0.436 Sum_probs=212.9
Q ss_pred eEEEEeEEEEcCCCC------------------ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000284 1354 IIYLRNLRKVYPGGK------------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG 1415 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~------------------~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G 1415 (1723)
.|+++|++|.|+++. +.+....++|+||+|++|||+.|+|-+|||||||+|+|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588999999998642 12345678999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCC-ChHH----hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCC
Q 000284 1416 TAFIFGKDIRS-DPKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1490 (1723)
Q Consensus 1416 ~i~i~G~~i~~-~~~~----~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 1490 (1723)
+|.++|.|+.+ +.++ .|+++++|+|..+|+|..||.||..|...+.|+++++.++++.++|+.+||..+.+++++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999966 3332 356799999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000284 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570 (1723)
Q Consensus 1491 ~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~ 1570 (1723)
+|||||||||.|||||+.+|+||++|||+|+|||--|.++.+-|.++.++-+ +||+++|||++|+.++.|||+||++|+
T Consensus 164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceEEEecCCe
Confidence 9999999999999999999999999999999999999999999999976654 689999999999999999999999999
Q ss_pred EEEecChhHHHhhcCC
Q 000284 1571 LRCIGSPQHLKTRFGN 1586 (1723)
Q Consensus 1571 l~~~g~~~~l~~~~~~ 1586 (1723)
++..|+|+|+...-.+
T Consensus 243 ivQ~Gtp~eIl~~PAn 258 (386)
T COG4175 243 IVQVGTPEEILLNPAN 258 (386)
T ss_pred EEEeCCHHHHHcCccH
Confidence 9999999998765433
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=430.18 Aligned_cols=224 Identities=29% Similarity=0.476 Sum_probs=205.6
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
..+|+++|++|+|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++...+ ..
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 357999999999953 46999999999999999999999999999999999999999999999999986533 34
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
++.|||+||++.+|+.+||.||+.+..+.++.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 67899999999999999999999987776677766777889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|||||||+|||+.+|+.+++.|+++.++.| .|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999865545 6899999999999999999999999999999999998754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=431.34 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++||+|.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 13 ~~L~l~~l~~~~~~----~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG----KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRH 87 (375)
T ss_pred ceEEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCC
Confidence 46999999999953 46999999999999999999999999999999999999999999999999886422 23578
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||||++.+|+++||+||+.|....++.+..+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998777777777778899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||||+|||+.+|+.+++.|+++.+ |.|+|++|||++|+..+||||++|++|++...|++.++.++
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999853 89999999999999999999999999999999999888654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=427.91 Aligned_cols=222 Identities=25% Similarity=0.404 Sum_probs=201.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+|+++|++|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHC
Confidence 4889999999963 45999999999999999999999999999999999999999999999999986532 2456
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
+||||||++.+++.+||+||+.+..... +.+.++.++++.++++.++|.+..++++.+|||||||||+|||||+.+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999876542 344455667889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|++|||||||+|||+.+++.+++.|+++.++.| +|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 155 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999965434 6899999999999999999999999999999999998654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=404.30 Aligned_cols=216 Identities=35% Similarity=0.582 Sum_probs=197.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|++|.|+++.+...+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++.+|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 78999999996432222699999999999999999999999999999999999999999999999988655556678999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
||||++.+++.+||+||+.+....++.+..+.++++.++++.+|+.+..++++++||||||||++|||||+.+|++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998777667666667788999999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++.+.|
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999985 5899999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=379.65 Aligned_cols=221 Identities=24% Similarity=0.436 Sum_probs=204.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----eEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD-----GTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~-----G~i~i~G~~i~~- 1426 (1723)
+.++++||++.|+ ++.||+|||++|++++++||+||+||||||++|++..+..... |+|.++|++|..
T Consensus 6 ~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 5689999999996 4679999999999999999999999999999999999987765 999999999966
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
+..++|++||+|+|.|.-|| +|++||+.+..++.|+..++.++.+++.|+...|. +..++.+..|||||||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 46789999999999999998 99999999999999988878888999999988885 457788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
||||||+-+|+|||||||||+|||.+...+.++|.++++ +-|||++||+|..+.+++|+.+++..|++++.|+.+++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999999999963 36999999999999999999999999999999999887
Q ss_pred Hhh
Q 000284 1581 KTR 1583 (1723)
Q Consensus 1581 ~~~ 1583 (1723)
...
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 643
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=427.91 Aligned_cols=220 Identities=24% Similarity=0.408 Sum_probs=201.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...++++
T Consensus 2 ~L~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-HARDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHCCE
Confidence 4889999999953 4699999999999999999999999999999999999999999999999988542 2345789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
|||||++.+|+++||+||+.+..... +.+.++.+++++++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876542 34566677899999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+|||||||+|||+.+|+.+++.|++++ + |+|+|++|||++++..+||||++|++|+++..|++.++.++
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999985 3 89999999999999999999999999999999999888543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=403.78 Aligned_cols=219 Identities=54% Similarity=0.863 Sum_probs=200.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++||+|.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.......++++|
T Consensus 1 l~~~~l~~~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG--TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC--CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEE
Confidence 4689999999632 14699999999999999999999999999999999999999999999999988654456678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.+.....+.+..+.+++++++++.++|.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999999999999998877777666666778899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999998789999999999999999999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=415.42 Aligned_cols=227 Identities=29% Similarity=0.466 Sum_probs=200.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC---hHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD---PKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~---~~~ 1430 (1723)
.|+++||+|.|++... ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 3889999999964210 124699999999999999999999999999999999999999999999999998652 245
Q ss_pred hccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc--cccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1431 ARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
.+++|||+||++. .+..+||+||+.+.....+.++++..+++.++++.+||. +..++++++||||||||++||+||+
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999863 223579999999876666777766777889999999997 5689999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
.+|++|||||||+|||+.+++.++++|++++++.| +|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN-MTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999965434 689999999999999999999999999999999998754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=429.75 Aligned_cols=221 Identities=28% Similarity=0.418 Sum_probs=205.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++|++|.|++ ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++... ...++.
T Consensus 18 ~~l~l~~v~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-PPYQRP 92 (377)
T ss_pred ceEEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHCC
Confidence 57999999999953 4699999999999999999999999999999999999999999999999988532 235678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+|||||++.+|+++||.||+.+..+.++.+..+.++++.++++.++|.+..++++++|||||||||+|||||+.+|++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998877777777888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||||++||+.+|+++++.|+++. .|.|+|++|||++|+..+||||++|++|++++.|++.++.++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999998874 389999999999999999999999999999999999888654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=428.95 Aligned_cols=221 Identities=29% Similarity=0.463 Sum_probs=201.8
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
.|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~-~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP-AER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-hHC
Confidence 5899999999963 469999999999999999999999999999999999999999999999999865322 346
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+|||+||++.+++.+||+||+.+....++.+..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999998776666666666678899999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||||||+|||+.+++.+++.|+++.++.| +|||++|||++++..+||||++|++|+++..|+++++.+
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999865444 589999999999999999999999999999999998864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=427.25 Aligned_cols=209 Identities=32% Similarity=0.479 Sum_probs=195.2
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHH----hcceEEEccCCCCCC
Q 000284 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEI----RKGLGVCPQYDILFP 539 (1723)
Q Consensus 465 ~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~----r~~ig~~~Q~~~l~~ 539 (1723)
.+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +..+. |+++|||||++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3569999999999999999999999999999999999999999999999999864 33334 678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHH
Q 000284 540 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619 (1723)
Q Consensus 540 ~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~ 619 (1723)
++||+||+.+.....|.++++.++++.++++.+||.+..++++++|||||||||+|||||+.+|++|||||||+||||.+
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999999998888888887888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 620 MRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 620 r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
++++.+.|++++ .|+|||++||+++|+..+||||++|++|+++..|+++++...
T Consensus 165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999985 389999999999999999999999999999999999887653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=400.99 Aligned_cols=213 Identities=33% Similarity=0.516 Sum_probs=190.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+++
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhcc
Confidence 468999999953 46999999999999999999999999999999999999999999999999886432 24567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.+.....+......++++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999898899999999876555555444455678889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELG-ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999864444 58999999999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=424.93 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=195.1
Q ss_pred ccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh----ccceEEEecCCCCCC
Q 000284 1372 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA----RRLIGYCPQFDALLE 1446 (1723)
Q Consensus 1372 ~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~----~~~ig~~pQ~~~l~~ 1446 (1723)
.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +.... +++||||||++.+++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4669999999999999999999999999999999999999999999999999875 34344 678999999999999
Q ss_pred CCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000284 1447 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526 (1723)
Q Consensus 1447 ~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~ 1526 (1723)
.+||+||+.+.....+.++++..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+||||.+
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999999988777777777777889999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1527 ~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
++.+.+.+.++.++.| +|||++|||++|+..+||||++|++|+++..|+++++..+
T Consensus 165 r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 165 RDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999865444 5899999999999999999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=429.86 Aligned_cols=219 Identities=28% Similarity=0.483 Sum_probs=202.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.+
T Consensus 3 ~l~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAERGV 77 (369)
T ss_pred EEEEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHCCE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999885322 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||+||++.+|+++||+||+.++...++.+.++.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999987777777777778899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+|||+.+++.+++.|+++. + |+|+|++||+++++..+||||++|++|++++.|++.++..
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999984 3 8999999999999999999999999999999999988754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=401.69 Aligned_cols=211 Identities=33% Similarity=0.538 Sum_probs=191.5
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV-PPERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-chhhccEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987532 22457899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.+.....+......+++++++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999988765555555566678899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.++++|++++ .|+|||++||++++++.+||||++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999985 3899999999999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=426.33 Aligned_cols=229 Identities=24% Similarity=0.418 Sum_probs=203.4
Q ss_pred eEEEEeEEEEcCCCCc------------------cCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 000284 1354 IIYLRNLRKVYPGGKR------------------SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDG 1415 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~------------------~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G 1415 (1723)
+|+++||+|.|+.... .+...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 6889999999876321 1234589999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCC-hHH----hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCC
Q 000284 1416 TAFIFGKDIRSD-PKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF 1490 (1723)
Q Consensus 1416 ~i~i~G~~i~~~-~~~----~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 1490 (1723)
+|+++|.++... ... .+++|||+||++.+++.+|++||+.+....++.+..+.++++.++++.++|.+..++++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence 999999998652 222 246799999999999999999999988777776666666778899999999989999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000284 1491 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570 (1723)
Q Consensus 1491 ~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~ 1570 (1723)
+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.++.| +|||++|||++++..+||||++|++|+
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g-~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC-CeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999864444 689999999999999999999999999
Q ss_pred EEEecChhHHHhh
Q 000284 1571 LRCIGSPQHLKTR 1583 (1723)
Q Consensus 1571 l~~~g~~~~l~~~ 1583 (1723)
+++.|+++++..+
T Consensus 243 i~~~g~~~~l~~~ 255 (400)
T PRK10070 243 VVQVGTPDEILNN 255 (400)
T ss_pred EEecCCHHHHHhC
Confidence 9999999988654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=401.03 Aligned_cols=210 Identities=26% Similarity=0.475 Sum_probs=190.9
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~r 525 (1723)
++++|+++.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|
T Consensus 2 l~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGG--HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCC--CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 7899999999632 2369999999999999999999999999999999999999999999999998743 123467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+||+||++.+++.+||.||+.+.....+...++.++++.++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88999999999999999999999877666665556677899999999999989999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999985 489999999999999999999999999974
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=414.30 Aligned_cols=224 Identities=31% Similarity=0.513 Sum_probs=200.3
Q ss_pred eEEEEeEEEEecCcCC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc---HHHH
Q 000284 449 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD---MDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~-~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~---~~~~ 524 (1723)
+|+++||+|.|++..+ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4889999999964221 24699999999999999999999999999999999999999999999999988642 3466
Q ss_pred hcceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--cccccccCCCChhHHHHHHHHHHHhc
Q 000284 525 RKGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA--DKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 525 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
++.+|||||++. .+...||+||+.+.....+.+.++.++++.++++.+||. +..++++++||||||||++||+||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 789999999973 233579999999877667777777888899999999997 67899999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+|++|||||||+|||+.++++++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999985 3 8999999999999999999999999999999999877643
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=426.10 Aligned_cols=227 Identities=26% Similarity=0.456 Sum_probs=201.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
++|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 36899999999963 569999999999999999999999999999999999999999999999999876 45667
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHc--CCC--hhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIK--GVA--EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--g~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
+++|||+||++.+++.+|++||+.+....+ ... ....+++++++++.+++.+..++++.+||||||||++|||||+
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 788999999999988999999998743211 111 2334567889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH------HH
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH------LK 1581 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~------l~ 1581 (1723)
++|++|||||||+|||+.+++.++++|+++++ +| +|||++|||++++.++|||+++|++|++++.|++++ +.
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~ 233 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLR 233 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHH
Confidence 99999999999999999999999999999964 44 589999999999999999999999999999999987 44
Q ss_pred hhcCCe
Q 000284 1582 TRFGNF 1587 (1723)
Q Consensus 1582 ~~~~~~ 1587 (1723)
+.|+..
T Consensus 234 ~~~~~~ 239 (402)
T PRK09536 234 AAFDAR 239 (402)
T ss_pred HHhCCc
Confidence 566543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=399.48 Aligned_cols=218 Identities=33% Similarity=0.555 Sum_probs=195.8
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+++++|++|+|++.. ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 478999999996421 112699999999999999999999999999999999999999999999999998755555678
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
++||+||++.+++.+|++||+.+....++.+..+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999998999999998776666655556678889999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
||||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+|||+++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLR-ALG-KCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999985 344 58999999999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=403.00 Aligned_cols=222 Identities=32% Similarity=0.502 Sum_probs=199.5
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc----HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 525 (1723)
|+++|+++.|+++.+.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431123699999999999999999999999999999999999999999999999987532 12357
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+||+||++.+++.+|++||+.+.....+.......+++.++++.+||.+..++++.+||||||||++||+||+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 78999999999999999999998876666665555667889999999999889999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred EEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999985 3 899999999999999999999999999999999887664
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=403.74 Aligned_cols=221 Identities=29% Similarity=0.452 Sum_probs=195.7
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV-QER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-ccc
Confidence 4889999999963 469999999999999999999999999999999999999999999999998754222 356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCC----ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGV----AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
++||+||++.+++.+|++||+.+.....+. ...+..+.+.++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 799999999998889999999876554432 2233445678899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999864434 589999999999999999999999999999999988753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=426.13 Aligned_cols=225 Identities=30% Similarity=0.467 Sum_probs=201.8
Q ss_pred eEEEEeEEEEecCcC--------------------CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 000284 449 CIQIRKLHKVYATKR--------------------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~--------------------~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G 508 (1723)
.|+++||+|.|+... +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 577778888776532 123489999999999999999999999999999999999999999
Q ss_pred eEEEccccCCc-cHH---H-HhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 000284 509 DALVFGKNITA-DMD---E-IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 583 (1723)
Q Consensus 509 ~i~i~g~~i~~-~~~---~-~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~ 583 (1723)
+|+++|.++.. +.. + .++++||+||++.+|+.+||+||+.+....++.+.++.++++.++++.+||.+..+++++
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence 99999999863 222 2 246899999999999999999999998877777777777889999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 584 ~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|++++ .|+|||++||+++++..+||||++|++|++
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999984 489999999999999999999999999999
Q ss_pred EEecCHHHHHhh
Q 000284 662 KCCGSSLFLKHQ 673 (1723)
Q Consensus 662 ~~~Gs~~~Lk~~ 673 (1723)
++.|++.++...
T Consensus 244 ~~~g~~~~l~~~ 255 (400)
T PRK10070 244 VQVGTPDEILNN 255 (400)
T ss_pred EecCCHHHHHhC
Confidence 999999887543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=401.92 Aligned_cols=226 Identities=30% Similarity=0.497 Sum_probs=199.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+|+++|++|+|++.. +.+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999996320 112699999999999999999999999999999999999999999999999998642 2 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..++.+||+||++.+++.+|++||+.+....++.......+.+.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 34678999999999999899999998766555555444556788899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999864434 689999999999999999999999999999999887753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=398.26 Aligned_cols=212 Identities=31% Similarity=0.493 Sum_probs=189.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----hH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----PK 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~----~~ 1429 (1723)
+|+++|++++|+++ .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24599999999999999999999999999999999999999999999999988542 12
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..++++||+||++.+++.+|++||+.+.....+......++++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999998876665655445566788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||+++++.+|||+++|++|++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMRLFEEFNR-RG-TTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999853 44 5899999999999999999999999974
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=398.46 Aligned_cols=220 Identities=55% Similarity=0.928 Sum_probs=198.4
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|.|+++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999631 246999999999999999999999999999999999999999999999999986544556778
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.+....++.+.....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999998899999999987776666555555678889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 220 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVR-K-G-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHh-c-C-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHcC
Confidence 999999999999999999999985 3 3 58999999999999999999999999999999988753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=401.08 Aligned_cols=223 Identities=27% Similarity=0.471 Sum_probs=199.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+++++|++++|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 4789999999953 4699999999999999999999999999999999999999999999999988653334456
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
.++|+||++.+++.+|++||+.+....++.+.....+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++|
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999988888999999988776665554445567888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~ 1584 (1723)
||||||+|||+.+++.+++.|+++++++| +|||++||++++++. |||+++|++|++++.|+++++.+.+
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRDQG-LSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 99999999999999999999999864444 589999999999985 9999999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=396.18 Aligned_cols=211 Identities=34% Similarity=0.620 Sum_probs=193.7
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++|+++.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.......++.+|
T Consensus 1 i~~~~~~~~~~~----~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK----KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC----EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheE
Confidence 468999999953 36999999999999 9999999999999999999999999999999999988643355678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+|+.+||.||+.+.....+.+.++.+++++++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998776666665566778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999987799999999999999999999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=420.75 Aligned_cols=228 Identities=25% Similarity=0.422 Sum_probs=200.5
Q ss_pred EEEEeEEEEcCCCC------------------ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 000284 1355 IYLRNLRKVYPGGK------------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~------------------~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~ 1416 (1723)
|+++||.|.||.+. +.+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 35677777776532 124567999999999999999999999999999999999999999999
Q ss_pred EEEcCe----eCCC-ChH---Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCC
Q 000284 1417 AFIFGK----DIRS-DPK---AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487 (1723)
Q Consensus 1417 i~i~G~----~i~~-~~~---~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~ 1487 (1723)
|+++|+ ++.. ... +. +++|||+||++.+++.+|++||+.+.....+.++.+.++++.++++.+||.+..++
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~ 160 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK 160 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 999997 4433 222 22 35799999999999999999999988777777766667788999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE
Q 000284 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1567 (1723)
Q Consensus 1488 ~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~ 1567 (1723)
++.+||||||||++|||||+.+|+||||||||+||||.+++.+++.|.++.++.+ +|||++|||++++.++||||++|+
T Consensus 161 ~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~~~l~DrI~vl~ 239 (382)
T TIGR03415 161 KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEALKIGNRIAIME 239 (382)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999865444 689999999999999999999999
Q ss_pred CCEEEEecChhHHHhh
Q 000284 1568 GGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1568 ~G~l~~~g~~~~l~~~ 1583 (1723)
+|+++..|+++++..+
T Consensus 240 ~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 240 GGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCEEEEecCHHHHhhC
Confidence 9999999999998653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=397.46 Aligned_cols=216 Identities=30% Similarity=0.486 Sum_probs=192.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|.|++.. +.+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999996421 11469999999999999999999999999999999999999999999999998752 3567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.+....++.+.....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999898889999999887666665555556678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--CCEEEEecCh
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--GGQLRCIGSP 1577 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~--~G~l~~~g~~ 1577 (1723)
|||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|+ +|++++.++.
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999854444 589999999999999999999999 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=413.70 Aligned_cols=222 Identities=27% Similarity=0.463 Sum_probs=199.4
Q ss_pred eEEEEeEEEEecCcC-CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--------
Q 000284 449 CIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------- 519 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~-~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------- 519 (1723)
.|+++||++.|+++. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 12369999999999999999999999999999999999999999999999876521
Q ss_pred -----------------cHHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccc
Q 000284 520 -----------------DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVN 579 (1723)
Q Consensus 520 -----------------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~ 579 (1723)
.....++.+|||||++ .++ ..||+||+.|.....+.+.++.++++.++++.+||. +..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 2345678999999986 344 579999999887777888888888999999999997 6789
Q ss_pred cccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeC
Q 000284 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMAN 658 (1723)
Q Consensus 580 ~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~ 658 (1723)
+++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999985 589999999999999999999999999
Q ss_pred CEEEEecCHHHHH
Q 000284 659 GSLKCCGSSLFLK 671 (1723)
Q Consensus 659 G~l~~~Gs~~~Lk 671 (1723)
|++++.|++.++.
T Consensus 241 G~i~~~g~~~~~~ 253 (305)
T PRK13651 241 GKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEECCHHHHh
Confidence 9999999987764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=411.14 Aligned_cols=225 Identities=27% Similarity=0.423 Sum_probs=198.2
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----ChH
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DPK 1429 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-----~~~ 1429 (1723)
++++||+|+|++... ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 789999999964211 12469999999999999999999999999999999999999999999999999852 234
Q ss_pred HhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHH
Q 000284 1430 AARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
..+++||||||++ .++ ..||+||+.+.....+.+..+.++++.++++.++|. +..++++.+|||||||||+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 5677899999986 455 479999998876656666666667888999999997 567999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+.+|++|||||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g-~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG-LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999965445 589999999999999999999999999999999988753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=411.57 Aligned_cols=222 Identities=30% Similarity=0.469 Sum_probs=200.0
Q ss_pred eEEEEeEEEEecCcC-CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHH
Q 000284 449 CIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 522 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~-~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 522 (1723)
+|+++||++.|+.+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 378999999996422 12359999999999999999999999999999999999999999999999998742 245
Q ss_pred HHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000284 523 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 523 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
..|+.+||++|++ .+++ .||.||+.|.....+.+..+.++++.++++.+||. +..++.+.+||||||||++||+||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 6788999999987 5665 59999999887666777777888899999999996 567999999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999986 5899999999999999999999999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=423.86 Aligned_cols=225 Identities=26% Similarity=0.446 Sum_probs=202.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+.+++
T Consensus 3 ~L~~~nls~~y~----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence 689999999995 3569999999999999999999999999999999999999999999999998864 45667889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhc--CCC--HHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLK--GVK--EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~--g~~--~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
+||+||++.+++.+||+||+.+....+ .+. ....+++++++++.+|+.+..++++.+||||||||++|||||+++|
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999988999999998754221 111 2345678899999999999999999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHH------HHhhhCC
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF------LKHQYGV 676 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~------Lk~~~g~ 676 (1723)
++|||||||+|||+.++++++++|+++. +|+|||++||+++++..+|||+++|++|++++.|++++ +.+.|+.
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~~~~ 238 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDA 238 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHHhCC
Confidence 9999999999999999999999999986 58999999999999999999999999999999999986 5666664
Q ss_pred c
Q 000284 677 G 677 (1723)
Q Consensus 677 g 677 (1723)
.
T Consensus 239 ~ 239 (402)
T PRK09536 239 R 239 (402)
T ss_pred c
Confidence 3
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=401.75 Aligned_cols=218 Identities=32% Similarity=0.534 Sum_probs=195.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHH-Hhcc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE-IRKG 527 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~-~r~~ 527 (1723)
++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .... .++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEECC----EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcC
Confidence 468999999953 469999999999999999999999999999999999999999999999998754 2222 3567
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHH
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGV----------KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 597 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~----------~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~ 597 (1723)
+||+||++.+++.+||+||+.+.....+. ...+.+++++++++.+|+.+..++++++||||||||++|||
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999999999999999887654332 23445667899999999998889999999999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++.+.|++.++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999999999986 6899999999999999999999999999999999987764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=395.45 Aligned_cols=213 Identities=31% Similarity=0.489 Sum_probs=191.2
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .+++
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~-~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP-KDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-ccce
Confidence 468999999963 459999999999999999999999999999999999999999999999999854222 2467
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
++|+||++.+++.+|++||+.+.....+....+.++++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999898889999999887666565555556678889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999864444 58999999999999999999999999998875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=411.77 Aligned_cols=221 Identities=31% Similarity=0.482 Sum_probs=198.8
Q ss_pred EEEEeEEEEecCcCC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHHH
Q 000284 450 IQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDE 523 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~-~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~ 523 (1723)
++++||+|.|++..+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999964221 2469999999999999999999999999999999999999999999999998842 3446
Q ss_pred HhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHh
Q 000284 524 IRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 524 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
.|+.+|||||++ .++ ..||.||+.+.....+.+.++.+++++++++.+||. +..++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 678899999986 456 469999999877666777777778899999999997 5679999999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
.+|++|||||||+|||+.++++++++|++++ + |.|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999985 3 899999999999999999999999999999999987764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=398.52 Aligned_cols=211 Identities=31% Similarity=0.517 Sum_probs=188.5
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccH-----HHH
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM-----DEI 524 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~-----~~~ 524 (1723)
|+++||++.|++.++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999964211146999999999999999999999999999999999999999999999999875311 124
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
++.+||+||++.+++.+||+||+.+....++......+++++++++.+||.+..++.+++||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999987766666555566788999999999988899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
+|||||||+|||+.+++.++++|+++++ |+|||++||++++++ +|||+++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999853 899999999999998 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=421.09 Aligned_cols=209 Identities=29% Similarity=0.443 Sum_probs=191.7
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccc----cCCc-c---HHHHh-cceEEEccCC
Q 000284 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK----NITA-D---MDEIR-KGLGVCPQYD 535 (1723)
Q Consensus 465 ~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~----~i~~-~---~~~~r-~~ig~~~Q~~ 535 (1723)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++.. + ..+.| +++||+||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 457999999999999999999999999999999999999999999999996 4432 1 22333 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCC
Q 000284 536 ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM 615 (1723)
Q Consensus 536 ~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgL 615 (1723)
.+++.+||+||+.++....|.++.+.++++.++++.+||.+..++++.+||||||||++|||||+.+|+||||||||+||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 99999999999999877778777777888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 616 DPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 616 D~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
||.+++++++.|.++++ ++|||++|||++++..+||||++|++|+++..|++.++..+
T Consensus 196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999853 89999999999999999999999999999999999888543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=402.26 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=195.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.+
T Consensus 2 ~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQERNV 76 (239)
T ss_pred EEEEEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-ccccce
Confidence 3789999999953 46999999999999999999999999999999999999999999999999875321 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGV----KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~----~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
||+||++.+++.+||.||+.+.....+. ...+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999887654432 334455678899999999988899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999985 3 899999999999999999999999999999999987764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=397.51 Aligned_cols=214 Identities=32% Similarity=0.499 Sum_probs=193.2
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++||+|.|++..+.+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCcEE
Confidence 4689999999642212469999999999999999999999999999999999999999999999988752 357899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.+....++.+.+..+++++++++.+||.+..++++++||||||||++|||||+.+|+++|||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999998776666665666778999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEe--CCEEEEecCH
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMA--NGSLKCCGSS 667 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~--~G~l~~~Gs~ 667 (1723)
|||+|||+.+++.++++|+++. .|+|||++||+++++..+|||+++|+ +|+++..++.
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999884 38999999999999999999999999 7999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=400.24 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=196.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH-HHhcc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIRKG 527 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r~~ 527 (1723)
++++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.. ..++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeCC----EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhcc
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 222 24567
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+||+||++.+++.+||+||+.+....++....+.+++++++++.+|+.+..++.+++||||||||++||+||+.+|++||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987665565555566788999999999988999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++++.|++.++
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999986 589999999999999999999999999999999987665
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=416.11 Aligned_cols=226 Identities=24% Similarity=0.391 Sum_probs=202.7
Q ss_pred ceEEEEeEEEEecCcC---------CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC
Q 000284 448 RCIQIRKLHKVYATKR---------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT 518 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~---------~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~ 518 (1723)
..++++||++.|+.+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 5799999999997421 1357999999999999999999999999999999999999999999999999985
Q ss_pred c----cHHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhH
Q 000284 519 A----DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLK--GVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGM 589 (1723)
Q Consensus 519 ~----~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~--g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGq 589 (1723)
. +....|+++||+||++ .+++.+||.||+.+..... +.++++.++++.++++.+||. +..++++++|||||
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~ 166 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQ 166 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHH
Confidence 3 2334678899999997 6899999999998865543 466677788899999999995 46799999999999
Q ss_pred HHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCH
Q 000284 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667 (1723)
Q Consensus 590 kqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~ 667 (1723)
|||++|||||+.+|++|||||||+|||+.++++++++|+++++ |.|||++|||++++..+||||++|.+|++++.|++
T Consensus 167 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~ 246 (331)
T PRK15079 167 CQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTY 246 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999853 89999999999999999999999999999999999
Q ss_pred HHHHhh
Q 000284 668 LFLKHQ 673 (1723)
Q Consensus 668 ~~Lk~~ 673 (1723)
.++.+.
T Consensus 247 ~~i~~~ 252 (331)
T PRK15079 247 DEVYHN 252 (331)
T ss_pred HHHHcC
Confidence 887654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=407.11 Aligned_cols=221 Identities=27% Similarity=0.429 Sum_probs=196.8
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+|+++|++|.|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 6899999999952 2459999999999999999999999999999999999999999999999999865 344567
Q ss_pred cceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
++|||+||++. .+..+||.||+.+.....+.+..+.++++.++++.++|.+..++++.+||||||||++||+||+.+|+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 78999999962 34568999999876555566655566778899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+|||||||+|||+.+++.++++|+++++ +| +|||++||+++++.++||||++|++|++++.|+++.+.
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHN-QG-KTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999864 44 68999999999999999999999999999999987543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=407.90 Aligned_cols=220 Identities=31% Similarity=0.433 Sum_probs=195.5
Q ss_pred EEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH----
Q 000284 1356 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA---- 1430 (1723)
Q Consensus 1356 ~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~---- 1430 (1723)
.++|++|.|+ .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 26 ~~~~~~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTG------QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcC------CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 4678888885 35689999999999999999999999999999999999999999999999988542 211
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
.++++||+||++.+++.+|++||+.+.....+.......+++.++++.++|.+..++++.+|||||||||+||+||+.+|
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 24579999999999989999999988765555554445567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999864434 589999999999999999999999999999999988765
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=414.08 Aligned_cols=231 Identities=23% Similarity=0.337 Sum_probs=202.3
Q ss_pred cceEEEEeEEEEcCCCCc-------cCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeC
Q 000284 1352 NAIIYLRNLRKVYPGGKR-------SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI 1424 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~-------~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i 1424 (1723)
+++|+++||+|.|+.+.. .+...+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999964210 0135699999999999999999999999999999999999999999999999998
Q ss_pred CCC-h---HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHc--CCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChh
Q 000284 1425 RSD-P---KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIK--GVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGG 1495 (1723)
Q Consensus 1425 ~~~-~---~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~--g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 1495 (1723)
... . ...+++|||++|++ .+++.+|+.||+.+..... +.++++.++.+.++++.++|. +..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 652 2 23567899999997 6888999999998765443 355566677888999999995 5689999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1496 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1496 ~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++.| .|||++|||++++..+||||++|.+|++++.|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~-~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG-LSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999965444 68999999999999999999999999999999
Q ss_pred ChhHHHhh
Q 000284 1576 SPQHLKTR 1583 (1723)
Q Consensus 1576 ~~~~l~~~ 1583 (1723)
+++++.+.
T Consensus 245 ~~~~i~~~ 252 (331)
T PRK15079 245 TYDEVYHN 252 (331)
T ss_pred CHHHHHcC
Confidence 99888653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=398.83 Aligned_cols=221 Identities=30% Similarity=0.480 Sum_probs=199.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|+++.|++ +.+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.......++.++
T Consensus 2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA----RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 789999999953 4699999999999999999999999999999999999999999999999987543233456899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.+....++.+..+.++++.++++.+||.+..++.+.+||||||||++|||||+.+|+++|||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999998889999999988776666665556678899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
|||+|||+.+++.+++.|++++ +|+|||++||+++++.. ||||++|++|++++.|++..+.+.++
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALG 224 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcC
Confidence 9999999999999999999985 48999999999999985 99999999999999999988876543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=398.98 Aligned_cols=219 Identities=34% Similarity=0.558 Sum_probs=195.5
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-hc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA-AR 1432 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~-~~ 1432 (1723)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999953 4599999999999999999999999999999999999999999999999987642 222 34
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
+.+||+||++.+++.+|++||+.+....++....+..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 67999999999999999999998866555554444556778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKD-RG-IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999863 44 58999999999999999999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=412.19 Aligned_cols=229 Identities=24% Similarity=0.382 Sum_probs=199.8
Q ss_pred CCcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--
Q 000284 1350 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-- 1427 (1723)
Q Consensus 1350 ~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-- 1427 (1723)
.+.++|+++|+++.|++... ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 34568999999999964210 124599999999999999999999999999999999999999999999999987532
Q ss_pred ---------------hHHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCC
Q 000284 1428 ---------------PKAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPS 1489 (1723)
Q Consensus 1428 ---------------~~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 1489 (1723)
....+++||||+|++ .+++ .|++||+.+.....+.+..+..+++.++++.++|. +..++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 235678899999986 4665 59999998765445566666667788999999996 6789999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECC
Q 000284 1490 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569 (1723)
Q Consensus 1490 ~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G 1569 (1723)
.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++|++|
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~-~~g-~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANN-KTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH-HCC-CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999986 344 68999999999999999999999999
Q ss_pred EEEEecChhHHHh
Q 000284 1570 QLRCIGSPQHLKT 1582 (1723)
Q Consensus 1570 ~l~~~g~~~~l~~ 1582 (1723)
++++.|+++++..
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999998754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=400.23 Aligned_cols=222 Identities=35% Similarity=0.577 Sum_probs=198.2
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
++++|++++|++ .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999963 1459999999999999999999999999999999999999999999999998864 3445577
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc--ccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK--HAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
.+||+||++.+++.+|++||+.+.....+.......+.+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999989999999988766655554445567889999999985 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+||||++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999864334 589999999999999999999999999999999887754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=395.34 Aligned_cols=211 Identities=27% Similarity=0.487 Sum_probs=192.3
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..++.+|
T Consensus 1 i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRDIA 75 (213)
T ss_pred CEEEeeEEEECC----eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccceEE
Confidence 468999999953 36999999999999999999999999999999999999999999999999875321 1246799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.++....+...++.+++++++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998766666666667778999999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.++++|++++ .|+|||++||+++++..+||||++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999985 3899999999999999999999999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=399.67 Aligned_cols=220 Identities=34% Similarity=0.534 Sum_probs=194.6
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-hc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA-AR 1432 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~-~~ 1432 (1723)
|+++|+++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999952 4599999999999999999999999999999999999999999999999988653 222 35
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCC----------ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHH
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGV----------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1502 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~i 1502 (1723)
+.+||+||++.+++.+|++||+.+.....+. ...+..+.+.++++.+++.+..++++++|||||||||+|
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 6799999999999999999999876544322 123345577889999999988999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999999864 44 589999999999999999999999999999999988753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=408.35 Aligned_cols=225 Identities=26% Similarity=0.445 Sum_probs=198.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----Ch
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DP 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-----~~ 1428 (1723)
+|+++|+++.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. ..
T Consensus 1 mi~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 4889999999964211 12359999999999999999999999999999999999999999999999999852 23
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000284 1429 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
...++.+||++|++ .+++ .||.||+.+.....+.+..+.++++.++++.++|. +..++++.+||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 45678899999986 5665 69999999876666776666777889999999996 57899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+||||++|++|++++.|+++++..
T Consensus 159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g-~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SG-QTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999864 44 589999999999999999999999999999999998754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=400.56 Aligned_cols=222 Identities=30% Similarity=0.482 Sum_probs=194.1
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC----hHH
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----PKA 1430 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~----~~~ 1430 (1723)
++++||++.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999963 14599999999999999999999999999999999999999999999999988642 234
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH--------HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1502 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~--------~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~i 1502 (1723)
.++.+||+||++.+++.+|++||+.+... +.+.......+++.++++.+++.+..++++.+|||||||||+|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 57789999999999998999999976421 1122223344567889999999888899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence 9999999999999999999999999999999999864444 589999999999999999999999999999999888643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=409.35 Aligned_cols=222 Identities=26% Similarity=0.410 Sum_probs=199.6
Q ss_pred eEEEEeEEEEecCcC-CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHH
Q 000284 449 CIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 522 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~-~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 522 (1723)
.++++||+|.|+++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 12469999999999999999999999999999999999999999999999998853 235
Q ss_pred HHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000284 523 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 523 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
.+|+.||||||++ .+++ .||.||+.+.....+.+.++.++++.++++.+||. +..++.+.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 6788999999986 4665 59999999876666777777788899999999997 678899999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999985 4899999999999999999999999999999999987764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=407.81 Aligned_cols=226 Identities=26% Similarity=0.434 Sum_probs=198.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----h
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----P 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-----~ 1428 (1723)
.++++||+|.|+++.. ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++... .
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3789999999964210 124699999999999999999999999999999999999999999999999998531 2
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000284 1429 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
...+++||||||++ .+++ .|+.||+.+.....+.+..+..+++.++++.+||. +..++++.+||||||||++||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 45678899999986 4555 59999998866555666666777888999999996 67889999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+.+|++|||||||+|||+.+++.++++|++++++.| +|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN-KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999864444 699999999999999999999999999999999988754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=406.49 Aligned_cols=225 Identities=28% Similarity=0.414 Sum_probs=200.5
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+|+++|+++.|++. +.+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKED---QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCC---CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 68999999999632 12459999999999999999999999999999999999999999999999999865 344567
Q ss_pred cceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+++||+||++ .++..+||+||+.+.....+.++++..+++.++++.++|.+..++++.+||||||||++||+||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7899999997 466778999999876655666666667788999999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|||||||+|||+.+++.+++.|++++++.| +|||++||++++++ .||||++|++|+++..|+++++..+
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999864434 68999999999995 7999999999999999999887643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=400.10 Aligned_cols=219 Identities=32% Similarity=0.519 Sum_probs=198.7
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
++++||++.|++. +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 1 l~~~~l~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGG---KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCc---ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcce
Confidence 4689999999631 459999999999999999999999999999999999999999999999998753 344567789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD--KVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~--~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
||+||++.+++.+||+||+.++....+.+.++.++++.++++.+|+.+ ..++++.+||||||||++|||||+.+|+++
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 157 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL 157 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998766666655566778899999999986 789999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||||+|||+.+++.+++.|++++ + |+|||++||+++++..+||||++|++|++++.|++..+.
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999985 3 899999999999999999999999999999999887664
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=409.66 Aligned_cols=225 Identities=24% Similarity=0.394 Sum_probs=198.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-------
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~------- 1426 (1723)
.|+++||++.|+++.. ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 4889999999964211 12359999999999999999999999999999999999999999999999886521
Q ss_pred ------------------ChHHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-ccc
Q 000284 1427 ------------------DPKAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHA 1485 (1723)
Q Consensus 1427 ------------------~~~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~ 1485 (1723)
.....+++|||+||++ .++ ..||+||+.+.....+.+.++..+++.++++.+||. +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 2245678899999985 444 579999998876666777777778899999999996 689
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEE
Q 000284 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGI 1565 (1723)
Q Consensus 1486 ~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~i 1565 (1723)
++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++++ +.| +|||++|||++++..+||||++
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g-~tiiivtHd~~~~~~~adrv~v 237 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQG-KTIILVTHDLDNVLEWTKRTIF 237 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeeCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999986 444 6899999999999999999999
Q ss_pred EECCEEEEecChhHHHh
Q 000284 1566 MVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1566 m~~G~l~~~g~~~~l~~ 1582 (1723)
|++|++++.|+++++.+
T Consensus 238 l~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 238 FKDGKIIKDGDTYDILS 254 (305)
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999988754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=395.24 Aligned_cols=220 Identities=26% Similarity=0.442 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh-H--
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP-K-- 1429 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~-~-- 1429 (1723)
++++++|++|.|+++. ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 5799999999996421 1146999999999999999999999999999999999999999999999999986532 1
Q ss_pred -Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1430 -AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1430 -~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
.. ++.+||+||++.+++.+|++||+.+.....+....+.++++.++++.+|+.+..++++.+||||||||++||+||+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 12 3679999999999999999999988655555554555667889999999998889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
.+|++|||||||+|||+.+++.+++.|+++++++| +|||++||++++++. +||+++|++|++++.|+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999864444 689999999999987 47999999999998775
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=400.19 Aligned_cols=218 Identities=30% Similarity=0.476 Sum_probs=197.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~---~ 520 (1723)
+++++||++.|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGE----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred CEEEEEEEEEECC----eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 4789999999953 35999999999999999999999999999999999999998 9999999998853 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....++.+||+||++.+++ +|++||+.+.....+ .+.++.+++++++++.+||. +..++++++||||||||++|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 4456788999999999998 999999998766555 34455667889999999998 67889999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999876799999999999999999999999999999999987764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=392.00 Aligned_cols=209 Identities=33% Similarity=0.596 Sum_probs=192.1
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..++.+|
T Consensus 1 l~~~~l~~~~~~----~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEE
Confidence 468999999953 469999999999999999999999999999999999999999999999988753 4567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.+.....+.+..+.++++.++++.+|+.+..++++.+||||||||++||+||+.+|+++|||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999998776666666666788999999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++.+.|
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999985 5899999999999999999999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=398.28 Aligned_cols=215 Identities=34% Similarity=0.496 Sum_probs=191.9
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEccccCCc-c--H
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI-----PPTTGDALVFGKNITA-D--M 521 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~-----~p~~G~i~i~g~~i~~-~--~ 521 (1723)
|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.. + .
T Consensus 1 i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHH
Confidence 468999999953 36999999999999999999999999999999999999 9999999999998753 2 3
Q ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCCcccccc--cCCCChhHHHHHHHHHH
Q 000284 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE-ELLESVVAEMVDEVGLADKVNIV--VRALSGGMKRKLSLGIA 598 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~v~~~l~~~~l~~~~~~~--~~~LSgGqkqrl~lA~a 598 (1723)
...++++||+||++.++ .+||+||+.+.....+... ++.++++.++++.+|+.+..+++ +.+||||||||++||||
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 45678899999999888 7999999988766555433 33567889999999998877776 59999999999999999
Q ss_pred HhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHH
Q 000284 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF 669 (1723)
Q Consensus 599 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~ 669 (1723)
|+.+|+++||||||+|||+.+++.++++|+++++.+|||++||+++++..+|||+++|++|++++.|++.+
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999998655999999999999999999999999999999988643
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=375.51 Aligned_cols=223 Identities=30% Similarity=0.428 Sum_probs=197.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh--HH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP--KA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~--~~ 1430 (1723)
++++++||+..|++ ..||++|||+|++|||++|+|+||||||||+|.|+|+.+|.+|+|.++|+|+...+ +.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47999999999963 67999999999999999999999999999999999999999999999999998732 45
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcC-CccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD-LLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.|..|+||||...+|+.|||+|||.+.+..+.- +...+...++..+.|- |.+..+++.++|||||||.|+|||||+.+
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 688899999999999999999999986554322 1111222556666665 67889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|++|+|||||.||-|.-.++|.+.|++++++.| .||+++-++...|.+++||.++|++|+++..|+.++|.+.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999975444 7999999999999999999999999999999999998753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=406.03 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=198.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++||+|.|++ .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.
T Consensus 4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhh
Confidence 6899999999953 2359999999999999999999999999999999999999999999999998853 34556788
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+||+||++. .+...||.||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++|||||+.+|++|
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999973 3446799999998766566776667788999999999998899999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|+++.+
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999985 589999999999999999999999999999999998654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=407.62 Aligned_cols=222 Identities=27% Similarity=0.459 Sum_probs=198.3
Q ss_pred eEEEEeEEEEecCcCC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHH
Q 000284 449 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 522 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~-~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 522 (1723)
.|+++||+|.|++... .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4789999999963211 2469999999999999999999999999999999999999999999999998753 234
Q ss_pred HHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000284 523 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 523 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
..++.+||+||++ .++ .+||.||+.+.....+...++.+++++++++.+||. +..++++++||||||||++||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 5677899999997 355 579999998766555666667777899999999997 678999999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999986 5899999999999999999999999999999999987764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=405.52 Aligned_cols=224 Identities=28% Similarity=0.428 Sum_probs=199.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~~ 1431 (1723)
++|+++||++.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 479999999999631 24599999999999999999999999999999999999999999999999998653 3456
Q ss_pred ccceEEEecCC-CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFD-ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++.|||+||++ .++..+|+.||+.+.....+.+.++..+++.++++.++|.+..++++.+|||||||||+||+||+.+|
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 77899999997 36667899999988766656666566677889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++. |||+++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~-~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKG-ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999865434 689999999999985 99999999999999999988764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=376.69 Aligned_cols=221 Identities=30% Similarity=0.490 Sum_probs=197.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r 525 (1723)
+.++++||+-.|+ ...||+|+||++++|||++|+|+||||||||++.|+|+.+|.+|+|.++|+|++. .-+..|
T Consensus 2 ~mL~v~~l~~~YG----~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 2 PMLEVENLSAGYG----KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred CceeEEeEeeccc----ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 4689999999994 4679999999999999999999999999999999999999999999999999975 345678
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~-l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
..|+||||...+|+.|||+|||..++....- +...+..++++.+.+- |.+.+++++++|||||||.|+|||||+.+|+
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999987654322 1112222677777774 6788899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+|+|||||.||-|.-.+++.+.|+++++ |.||+++.++.+.|..++||.++|++|+++..|+.++|.+.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999973 78999999999999999999999999999999999888653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=404.30 Aligned_cols=223 Identities=25% Similarity=0.422 Sum_probs=198.5
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+++++|++|+|++ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus 3 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 6899999999953 2359999999999999999999999999999999999999999999999999864 344567
Q ss_pred cceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+++||+||++. .+...|+.||+.+.....+.......+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78999999963 23357999999876554566655566678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+|||||||+|||+.+++.++++|++++++.| +|||++||+++++.++|||+++|++|++++.|+++++.+
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999999865434 689999999999999999999999999999999998864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=405.84 Aligned_cols=224 Identities=24% Similarity=0.390 Sum_probs=199.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPK 1429 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~---~~~ 1429 (1723)
++|+++|++++|++ ++.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 47999999999952 2459999999999999999999999999999999999999999999999999842 234
Q ss_pred HhccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1430 AARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
..++.|||+||++. .+...|++||+.+.....+.+..+..+++.++++.++|.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 56788999999963 23457999999876555566666666778899999999989999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+|++|||||||+|||+.+++.++++|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999865434 689999999999999999999999999999999988764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=406.23 Aligned_cols=225 Identities=27% Similarity=0.444 Sum_probs=196.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----h
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----P 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-----~ 1428 (1723)
+|+++||+|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999963210 124699999999999999999999999999999999999999999999999988531 2
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000284 1429 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
...++.|||+||++ .++ .+|+.||+.+.....+...++..+++.++++.++|. +..++++++|||||||||+||+|
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 44567899999996 355 589999998765555555555667788999999997 67899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g-~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAG-HTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999985 344 689999999999999999999999999999999998754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=395.92 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=193.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH---H
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD---E 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~---~ 523 (1723)
+.++++||+|.|+.+...+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. +.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 469999999999643212469999999999999999999999999999999999999999999999998853 221 2
Q ss_pred H-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 524 I-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 524 ~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
. ++.+||+||++.+++.+|++||+.+.....+.+.++.++++.++++.+||.+..++.+.+||||||||++|||||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3 367999999999999999999999876555555566677899999999999888999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecC
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs 666 (1723)
|++|||||||+|||+.+++.++++|++++ +|+|||++||++++++. +||+++|++|++++.|+
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999999999999984 48999999999999987 57999999999998775
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=394.96 Aligned_cols=213 Identities=31% Similarity=0.480 Sum_probs=186.9
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh-H----
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP-K---- 1429 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~-~---- 1429 (1723)
|+++||++.|++++ ..+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999996421 0146999999999999999999999999999999999999999999999999886422 1
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..++++||+||++.+++.+|++||+.+....++......++.+.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 13567999999999999999999999876666654444556788899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
|++|||||||+|||+.+++.+++.|+++++++| +|||++||++++++ +|||+++|++|++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999864344 68999999999998 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=397.25 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=196.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC---hHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD---PKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~---~~~ 1430 (1723)
+++++|++|.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++... ...
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 4789999999953 4599999999999999999999999999999999999999999999999998642 234
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.++++||+||++.+++.+|++||+.+... ..+....+..+.+.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 57789999999999988999999987532 23444445556788999999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLA-EEG-MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHH-HcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999986 344 589999999999999999999999999999999887653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=410.83 Aligned_cols=223 Identities=26% Similarity=0.441 Sum_probs=199.9
Q ss_pred ceEEEEeEEEEecCcC-CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-------
Q 000284 448 RCIQIRKLHKVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA------- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~-~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~------- 519 (1723)
..|+++||++.|+++. ..+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 5799999999996431 12469999999999999999999999999999999999999999999999988743
Q ss_pred ----------cHHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 000284 520 ----------DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALS 586 (1723)
Q Consensus 520 ----------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LS 586 (1723)
.....|+.+|||+|++ .+|+. ||+||+.+.....+.+.++..+++.++++.+||. +..++.+.+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 2346788999999997 46764 9999998876555667777778899999999997 57899999999
Q ss_pred hhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 587 GGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 587 gGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
||||||++|||||+.+|++|||||||+|||+.++++++++|++++ +|+|||++||+++++..+||||++|++|++++.|
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999885 5899999999999999999999999999999999
Q ss_pred CHHHHH
Q 000284 666 SSLFLK 671 (1723)
Q Consensus 666 s~~~Lk 671 (1723)
++.++.
T Consensus 259 ~~~~~~ 264 (320)
T PRK13631 259 TPYEIF 264 (320)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=397.64 Aligned_cols=218 Identities=26% Similarity=0.459 Sum_probs=197.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc---cHHHHhc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 526 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 526 (1723)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +....++
T Consensus 2 l~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEECC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 789999999953 469999999999999999999999999999999999999999999999998753 2345678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+||+||++.+++.+||+||+.+... ..+...++.++++.++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 89999999999999999999987542 33555566677889999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999986 5899999999999999999999999999999999876654
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=399.43 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=194.0
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc----HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 525 (1723)
++++||++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 1 l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPN---GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCC---ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHH
Confidence 468999999953 14699999999999999999999999999999999999999999999999987532 34567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHH
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAV--------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 597 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~ 597 (1723)
+.+||+||++.+++.+||+||+.+... +.+...+..++++.++++.+++.+..++.+.+||||||||++||+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHH
Confidence 889999999999999999999976432 112222344567889999999998889999999999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||+.+|++|||||||+|||+.+++.++++|++++ .|+|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999985 3899999999999999999999999999999999887663
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=406.77 Aligned_cols=218 Identities=32% Similarity=0.466 Sum_probs=196.6
Q ss_pred EEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH---HH-h
Q 000284 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD---EI-R 525 (1723)
Q Consensus 451 ~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~---~~-r 525 (1723)
.++|++|.|+ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.. +. +
T Consensus 26 ~~~~~~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTG----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcC----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhc
Confidence 5678899995 3469999999999999999999999999999999999999999999999998753 111 12 4
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+++||+||++.+++.+||.||+.+.....+....+.++++.++++.+||.+..++.+++||||||||++|||||+.+|++
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 67999999999999999999999876666665556667889999999999889999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999984 3 8999999999999999999999999999999999887754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=402.66 Aligned_cols=223 Identities=25% Similarity=0.382 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P--- 1428 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~--- 1428 (1723)
.+|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 47999999999953 4699999999999999999999999999999999999999999999999988542 1
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
...++++||+||++.+++.+|+.||+.+..... +.+....++.+.++++.+++.+..++++.+||||||||++||+||+
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 234677999999999999899999998754332 2333334556778899999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
.+|++|||||||+|||+.+++.+++.|++++++.| +|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG-VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999864434 589999999999999999999999999999999988754
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=390.27 Aligned_cols=207 Identities=33% Similarity=0.617 Sum_probs=188.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 l~~~~l~~~~~~----~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK----KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC----eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987543 45677899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
||||++.+++.+||+||+.++....+.+ +++++++++.+++.+..++++++|||||||||+||+||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999999999999999998876554432 356788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 152 EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999986 5899999999999999999999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=395.39 Aligned_cols=215 Identities=27% Similarity=0.486 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceEEEEcCeeCCCC--
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE-----YPTDGTAFIFGKDIRSD-- 1427 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~-----~p~~G~i~i~G~~i~~~-- 1427 (1723)
|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999953 46999999999999999999999999999999999999 99999999999987542
Q ss_pred -hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh-hHHHHHHHHHHHcCCccccCCC--CCCCChhHHHHHHHH
Q 000284 1428 -PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY-RMDDVVMEKLVEFDLLKHAKKP--SFTLSGGNKRKLSVA 1503 (1723)
Q Consensus 1428 -~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~-~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~kqrl~iA 1503 (1723)
....++++||+||++.++ .+|++||+.+.....+.... ..++++.++++.+++.+..+++ +.+||||||||++||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 344577899999999888 79999999876655554332 2456778899999998776766 599999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1504 ~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
+||+.+|++|||||||+|||+.+++.+++.|+++++ + +|||++||+++++.++|||+++|++|++++.|++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999853 3 589999999999999999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=405.68 Aligned_cols=221 Identities=29% Similarity=0.434 Sum_probs=200.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++||++.|++. +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|++
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 68999999999642 12459999999999999999999999999999999999999999999999999864 44567788
Q ss_pred eEEEccCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYD-ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~-~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+||+||++ .+++.+||+||+.+.....|.+.++.+++++++++.+||.+..++.+.+||||||||++|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL 162 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII 162 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999997 36777899999998766667777777888999999999998899999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||||+|||+.+++.++++|++++ + |+|||++||+++++. .||||++|++|+++..|++.++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999985 3 899999999999995 79999999999999999987664
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=392.23 Aligned_cols=208 Identities=26% Similarity=0.513 Sum_probs=189.7
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc----HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 525 (1723)
++++|++|.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....+
T Consensus 2 l~~~~l~~~~~~---~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYPG---GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeCC---CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 789999999952 23699999999999999999999999999999999999999999999999988531 23467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+||+||++.+++.+|+.||+.+.....+......+++++++++.+++.+..++.+.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 88999999999999999999999876666665556677899999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGS 660 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~ 660 (1723)
+||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999985 58999999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=424.45 Aligned_cols=210 Identities=31% Similarity=0.439 Sum_probs=191.5
Q ss_pred CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEccccCCccHHHHhcceEEEccCCCCCCC
Q 000284 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 540 (1723)
Q Consensus 464 ~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~ 540 (1723)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. ...|+.+|||||++.+++.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCcc
Confidence 4567999999999999999999999999999999999999885 8999999998752 3567889999999999999
Q ss_pred CCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCcccccccC------CCChhHHHHHHHHHHHhcCCcEeeccCC
Q 000284 541 LTVREHLEMFAVLKG---VKEELLESVVAEMVDEVGLADKVNIVVR------ALSGGMKRKLSLGIALIGDSKVVILDEP 611 (1723)
Q Consensus 541 lTv~e~l~~~~~~~g---~~~~~~~~~v~~~l~~~~l~~~~~~~~~------~LSgGqkqrl~lA~al~~~p~vliLDEP 611 (1723)
+||+|||.|.+.++. .++++.+++++++++.+||.+..|+.++ .|||||||||+||+||+.+|++++||||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 999999999887753 3456677889999999999998888886 4999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHH-HHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 612 TSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD-EAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 612 tsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~-e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
|+|||+.++..+++.|++++ +|+|||+++|++. ++..++||+++|++|+++..|++.++++.+.
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 99999999999999999986 4899999999995 8888999999999999999999999877653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=419.97 Aligned_cols=221 Identities=28% Similarity=0.434 Sum_probs=194.9
Q ss_pred EEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--cceEEEccccCCccHHHHhcce
Q 000284 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--TGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 451 ~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~--~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.++|++|.|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. ..++++
T Consensus 70 ~~~~l~~~~~----~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQ----ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKRT 142 (659)
T ss_pred ccccccccCC----CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccce
Confidence 4667788884 346999999999999999999999999999999999999986 9999999998742 345679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCcccc-----cccCCCChhHHHHHHHHHHHh
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLK---GVKEELLESVVAEMVDEVGLADKVN-----IVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~v~~~l~~~~l~~~~~-----~~~~~LSgGqkqrl~lA~al~ 600 (1723)
|||+|++.+++.+||+||+.+.+.++ ..+.++.+++++++++.+||.+..| +.+++||||||||++||+||+
T Consensus 143 ~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred EEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 99999999999999999999887654 2345556678999999999987664 456789999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHH-HHHhhcCEEEEEeCCEEEEecCHHHHHhhhC-Cc
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD-EAEELGDRIAIMANGSLKCCGSSLFLKHQYG-VG 677 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~-e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g-~g 677 (1723)
.+|+||+|||||+|||+.+++++.++|++++ +|+|||++||+++ ++..++|+|++|++|++++.|++.++...+. .|
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G 302 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVG 302 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCC
Confidence 9999999999999999999999999999986 5999999999998 6889999999999999999999999887653 34
Q ss_pred E
Q 000284 678 Y 678 (1723)
Q Consensus 678 y 678 (1723)
|
T Consensus 303 ~ 303 (659)
T PLN03211 303 F 303 (659)
T ss_pred C
Confidence 4
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=396.59 Aligned_cols=219 Identities=27% Similarity=0.417 Sum_probs=196.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH-HHhc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIRK 526 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r~ 526 (1723)
.|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.. ..++
T Consensus 2 ~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 2 ILYLEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77 (242)
T ss_pred eEEEEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence 5889999999953 469999999999999999999999999999999999999999999999998753 222 2456
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHH
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLK--------GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 598 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--------g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~a 598 (1723)
.+||+||++.+++.+||+||+.++.... +...++.+++++++++.+|+.+..++.+++||||||||++||||
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 7999999999999999999998864321 12233456778999999999988899999999999999999999
Q ss_pred HhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 599 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999987899999999999999999999999999999999887663
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=403.62 Aligned_cols=228 Identities=26% Similarity=0.419 Sum_probs=200.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~--~~~ 1430 (1723)
++|+++|++|+|++..+.+.+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 479999999999742211135699999999999999999999999999999999999999999999999998642 345
Q ss_pred hccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1431 ARRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
.++++||+||++. ++ ..|+.||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++||+||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 6788999999974 44 46999999887665566666666778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++. |||+++|++|++++.|+++++...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG-ITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999864444 689999999999986 999999999999999999998654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=389.24 Aligned_cols=211 Identities=36% Similarity=0.599 Sum_probs=190.7
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|.|++ +.+++|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999953 46999999999999 99999999999999999999999999999999999886544556788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
++|+||++.+++.+|++||+.+.....+.+..+.++.+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987666665555556678889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|++++ + + +|||++||++++++.+|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELG-E-D-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHh-C-C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999985 3 3 58999999999999999999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=409.72 Aligned_cols=227 Identities=24% Similarity=0.350 Sum_probs=202.9
Q ss_pred ceEEEEeEEEEecCcCC------ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--
Q 000284 448 RCIQIRKLHKVYATKRG------NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~------~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-- 519 (1723)
..|+++||+|.|+.+.+ .+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46999999999974321 3579999999999999999999999999999999999999999999999999853
Q ss_pred --cHHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHHH
Q 000284 520 --DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 520 --~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSgGqkqrl 593 (1723)
+....|++|||+||++ .+++.+|+.+++....... +..+++.++++.++++.+||.+ ..++++++||||||||+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 2345678899999998 5899999999997655443 4566677788999999999974 67999999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|.+|++++.|+..++.
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999985 3899999999999999999999999999999999998886
Q ss_pred hhh
Q 000284 672 HQY 674 (1723)
Q Consensus 672 ~~~ 674 (1723)
+..
T Consensus 244 ~~p 246 (327)
T PRK11308 244 NNP 246 (327)
T ss_pred cCC
Confidence 543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=397.92 Aligned_cols=222 Identities=28% Similarity=0.456 Sum_probs=193.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+|+++|+++.|+. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 4789999999952 24599999999999999999999999999999999999999999999999987542 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHH--------HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHH
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLS 1501 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~--------~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~ 1501 (1723)
..++++||+||++.+++.+|++||+.+... +.+......++++.++++.+++.+..++++.+|||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 356789999999999999999999975321 111122233566788999999998889999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1502 iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|||||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG-ITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999999999864434 68999999999999999999999999999999988763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=407.53 Aligned_cols=230 Identities=20% Similarity=0.355 Sum_probs=201.5
Q ss_pred ceEEEEeEEEEcCCCCc----cCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh
Q 000284 1353 AIIYLRNLRKVYPGGKR----SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1428 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~----~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~ 1428 (1723)
++|+++||+|.|+.... .+...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++....
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 57999999999964211 01356999999999999999999999999999999999999999999999999986532
Q ss_pred ----HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHH
Q 000284 1429 ----KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1429 ----~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl 1500 (1723)
...|++|||+||++ .+.+.+|+.+++....... +..+.+.++++.++++.+||. ...++++++||||||||+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 24567899999997 6889999999987655443 455555667889999999996 467999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++||+||||+|||+.+++.++++|++++++.| +|||++|||++++..+||||++|.+|++++.|+++++
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g-~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG-LSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999975445 6899999999999999999999999999999999988
Q ss_pred Hhh
Q 000284 1581 KTR 1583 (1723)
Q Consensus 1581 ~~~ 1583 (1723)
.+.
T Consensus 243 ~~~ 245 (327)
T PRK11308 243 FNN 245 (327)
T ss_pred hcC
Confidence 754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=387.95 Aligned_cols=210 Identities=37% Similarity=0.582 Sum_probs=190.2
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..+++
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999952 459999999999999999999999999999999999999999999999988742 35678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
++|+||++.+++.+|++||+.+....++.+....++.+.++++.+++.+..++++.+||||||||++||+||+.+|++||
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999887766666555556778899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++++.|
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELAR-AG-KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999864 44 58999999999999999999999999998654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=395.66 Aligned_cols=219 Identities=26% Similarity=0.464 Sum_probs=195.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~-----~G~i~i~G~~i~~-- 1426 (1723)
+++++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999963 45999999999999999999999999999999999999998 9999999998864
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
.....++.+||+||++.+++ +|++||+.+....++. +..+..+.+.++++.+++. +..++++.+||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23455778999999998888 9999999886655552 3344556788899999997 678899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.++++|+++++ + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999853 3 5899999999999999999999999999999999887
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
.+
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 53
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=388.05 Aligned_cols=208 Identities=36% Similarity=0.552 Sum_probs=187.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|+|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999952 4699999999999999999999999999999999999999999999999987543 445678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.++...++.. ++++.++++.+++.+..++++.+|||||||||+||+||+.+|++||
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 149 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI 149 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998998999999998876654432 3457788999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|+++++ +| .|||++||+++++..+|||+++|++|++++.|
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 150 LDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999864 44 58999999999999999999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=400.59 Aligned_cols=221 Identities=27% Similarity=0.459 Sum_probs=197.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c---HHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDE 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~ 523 (1723)
..|+++||++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. + ...
T Consensus 6 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 6 NLVDMRGVSFTRG----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred ceEEEeCeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence 4799999999995 3469999999999999999999999999999999999999999999999998753 1 223
Q ss_pred HhcceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
.++.+||+||++.+++.+||.||+.+..... +.+....++++.++++.+|+.+..++++++||||||||++|||||+.+
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999998764332 344455566788999999999889999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++.+
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999985 3 8999999999999999999999999999999999877643
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=403.14 Aligned_cols=222 Identities=25% Similarity=0.402 Sum_probs=199.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc---cHHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEI 524 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~ 524 (1723)
.+|+++|+++.|++ ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 4 ~~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHH
Confidence 47999999999952 2469999999999999999999999999999999999999999999999998842 23457
Q ss_pred hcceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 525 RKGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 525 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
|+.+||+||++. .+...||+||+.+.....+.+.++.+++++++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 789999999973 2335799999988765556676667788999999999999999999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999985 3 8999999999999999999999999999999999877643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=389.51 Aligned_cols=209 Identities=26% Similarity=0.455 Sum_probs=190.2
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc----HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~r 525 (1723)
++++|+++.|+++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|
T Consensus 1 l~~~~l~~~~~~~---~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHH
Confidence 4689999999532 3699999999999999999999999999999999999999999999999988531 23467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.++|+||++.+++.+|++||+.++....+...++.+++++++++.+|+.+..++.+.+||||||||++|||||+.+|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 88999999999999999999999877666665666677889999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
+||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999985 589999999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=400.82 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=196.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHHh
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKAA 1431 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~--~~~~ 1431 (1723)
+++++|++|+|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999953 24599999999999999999999999999999999999999999999999998642 3456
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++.+||+||++. .+...|+.||+.+.....+.+..+..+.+.++++.+++.+..++++.+|||||||||+||+||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 778999999975 3556899999987666556666666677888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+||||||||+|||+.+++.+++.|++++ ++| +|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g-~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLH-EKG-KTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999986 344 68999999999996 599999999999999999988754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=390.72 Aligned_cols=218 Identities=30% Similarity=0.445 Sum_probs=191.6
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-hc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA-AR 1432 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~-~~ 1432 (1723)
|+++|++|+|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999953 4699999999999999999999999999999999999999999999999988652 222 35
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHc-CCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+++||+||++.+++.+|++||+.+.....+ ..+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 679999999999999999999988665443 223345566778888 57777899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD-EG-VTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999864 44 689999999999999999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=391.19 Aligned_cols=216 Identities=30% Similarity=0.507 Sum_probs=192.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH-HHhcc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD-EIRKG 527 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~-~~r~~ 527 (1723)
|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.. ..++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecCC----eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcC
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 222 24678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~-~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+||+||++.+++.+|++||+.+.....+ ..+.++++.++++.+ ++.+..++++.+||||||||++|||||+.+|+++
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 154 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999988765443 233456677888888 5888889999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++.+.|++.++.
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999986 5899999999999999999999999999999999877654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=388.72 Aligned_cols=210 Identities=31% Similarity=0.496 Sum_probs=187.8
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+|+++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 24599999999999999999999999999999999999999999999999998642 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..++.+||+||++.+++.+|++||+.+.....+......++++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 35678999999999998899999998876655555445566788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~ 1570 (1723)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999853 44 589999999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=396.70 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=197.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc--------
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-------- 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~-------- 520 (1723)
.++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFHG----QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhh
Confidence 5899999999953 3699999999999999999999999999999999999999999999999987421
Q ss_pred -HHHHhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHH
Q 000284 521 -MDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA 598 (1723)
Q Consensus 521 -~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~a 598 (1723)
....++.+||+||++.+++.+|+.||+.+... .++...++.++++.++++.+||.+..++.+++||||||||++||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 23567789999999999999999999987543 3445555566788999999999988899999999999999999999
Q ss_pred HhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 599 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999986 4899999999999999999999999999999999987764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=390.09 Aligned_cols=210 Identities=25% Similarity=0.430 Sum_probs=191.2
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c---HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 525 (1723)
|+++|++|.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ....|
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 789999999942 2369999999999999999999999999999999999999999999999998753 1 22357
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+||+||++.+++.+|++||+.+.....+.+.++.+++++++++.+++.+..++.+++||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 88999999999888999999999876666666666667888999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEE
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLK 662 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~ 662 (1723)
|||||||+|||+.+++.++++|++++ +++|||++||+++++..+||||++|++|+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999985 5899999999999999999999999999985
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=396.34 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=191.7
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999953 4599999999999999999999999999999999999999999999999987531 24
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
.+||+||++.+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+||+||+.+|++|
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 59999999999988999999987665556555555667889999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--CCEEEEecChh
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--GGQLRCIGSPQ 1578 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~--~G~l~~~g~~~ 1578 (1723)
||||||+|||+.+++.+++.|++++++.| +|||++|||++++..+|||+++|+ +|++++.++.+
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETG-KQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999854444 589999999999999999999998 59999887654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=396.86 Aligned_cols=222 Identities=28% Similarity=0.457 Sum_probs=195.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5899999999963 459999999999999999999999999999999999999999999999998754 334456
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh-----
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI----- 1507 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~----- 1507 (1723)
+.+||+||++.+++.+|++||+.+.....+....+.++.+.++++.+++.+..++++.+|||||||||+||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 789999999988788999999987543333333334456788999999998899999999999999999999999
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1508 -GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1508 -~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
.+|++|||||||+|||+.+++.+.+.|+++++++| +|||++||+++++..+||||++|++|+++..|+++++.+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 59999999999999999999999999999863444 589999999999999999999999999999999887643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=397.09 Aligned_cols=220 Identities=28% Similarity=0.432 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
+.++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 11 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 11 PQIKVENLNLWYGE----KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred eeEEEeeeEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 57999999999953 4699999999999999999999999999999999999985 89999999998753
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
+....++.+||+||++.+++ +|++||+.+.....+.+.+..+++++++++.+++. +..++++.+|||||||||+|
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 22346778999999999888 89999999876666666656667789999999984 45688999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999877743
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=401.79 Aligned_cols=222 Identities=28% Similarity=0.447 Sum_probs=200.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..++++||++.|+.. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .....++
T Consensus 4 ~~l~~~~l~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81 (279)
T ss_pred ceEEEEEEEEEeCCC--CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhh
Confidence 469999999999632 2469999999999999999999999999999999999999999999999999864 3345677
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+||+||++. ++..+||.||+.+.....+.+.++.+++++++++.+||.+..++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999973 677789999999877666666667778899999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||||+|||+.+++.++++|+++.+ |+|||++||+++++.. ||||++|++|++++.|++.++..
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999863 8999999999999975 99999999999999999877643
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=400.90 Aligned_cols=221 Identities=28% Similarity=0.453 Sum_probs=199.1
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++||+|.|++. ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 3 ~l~~~~l~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCCC---CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 58899999999532 359999999999999999999999999999999999999999999999998854 34566788
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+|||||++. .+...||.||+.+.....+.+.+..+++++++++.+||.+..++.+.+||||||||++|||||+.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999974 2335799999987665556666667778999999999998899999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999985 3 8999999999999999999999999999999999887753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=395.24 Aligned_cols=221 Identities=26% Similarity=0.373 Sum_probs=196.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC------
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD------ 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~------ 1427 (1723)
+++++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 6899999999963 4599999999999999999999999999999999999999999999999987532
Q ss_pred ---hHHhccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHH
Q 000284 1428 ---PKAARRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1503 (1723)
Q Consensus 1428 ---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA 1503 (1723)
....++.+||+||++.+++.+|++||+.+... .++.......+.+.++++.+++.+..++++++|||||||||+||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 13456789999999999988999999987433 23444444556788899999998888999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1504 ~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999863 44 589999999999999999999999999999999888753
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=400.96 Aligned_cols=219 Identities=28% Similarity=0.382 Sum_probs=197.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHHHhc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDEIRK 526 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~~r~ 526 (1723)
+++++||+|.|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 1 ml~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 1 MIRLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred CEEEEEEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence 3789999999953 2359999999999999999999999999999999999999999999999998853 2345678
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+|||||++. .+..+|+.||+.+.....+.+..+.+++++++++.+||.+..++++.+||||||||++||+||+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (274)
T PRK13644 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157 (274)
T ss_pred heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999975 356689999998876666677777778899999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++. .||||++|++|++++.|++.++.
T Consensus 158 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999986 5899999999999996 59999999999999999987764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=399.71 Aligned_cols=224 Identities=27% Similarity=0.428 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
++++++|++|.|+++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 579999999999631 3469999999999999999999999999999999999999999999999999864 33456
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++++||+||++. .++.+|++||+.+.....+....+.++.+.++++.++|.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 788999999974 5667899999987655545555555667888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
++|||||||+|||+.+++.+++.|++++++ +++|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999998643 3368999999999997 799999999999999999887653
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=396.78 Aligned_cols=218 Identities=28% Similarity=0.463 Sum_probs=192.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~r 525 (1723)
++++||++.|+. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|
T Consensus 2 l~~~~l~~~~~~---~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYPN---GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecCC---CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 789999999951 2469999999999999999999999999999999999999999999999998753 123457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHH
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAV--------LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 597 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~ 597 (1723)
+.+||+||++.+++.+||+||+.+... +.+....+.++++.++++.+|+.+..++++.+||||||||++|||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 889999999999999999999976321 112222344567899999999998889999999999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
||+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||++++|++|++++.|++.++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999999999984 3 89999999999999999999999999999999988665
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=387.96 Aligned_cols=213 Identities=28% Similarity=0.429 Sum_probs=189.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+|+++|++|.|++ .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 4789999999942 24599999999999999999999999999999999999999999999999988542 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
..++.+||+||++.+++.+|++||+.+.....+....+..+.+.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 35678999999998888899999998876666655555556778899999998888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEE
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1573 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~ 1573 (1723)
|++|||||||+|||+.+++.+++.|+++++ ++ +|||++||++++++.+|||+++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNR-VG-VTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999853 44 589999999999999999999999999853
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=399.06 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=195.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~---~~~~ 1430 (1723)
||+++||+|+|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999953 459999999999999999999999999999999999999999999999999842 2234
Q ss_pred hccceEEEecCCCC-CCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDAL-LEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l-~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.+++|||+||++.+ +...|+.||+.+.....+....+..+.+.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 56789999999753 34468999998766555655555556778899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999863 44 589999999999999999999999999999999988754
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=392.51 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=193.7
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-Hh
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-AA 1431 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~-~~ 1431 (1723)
+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 6899999999953 4699999999999999999999999999999999999999999999999987542 22 23
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHc--------CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHH
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIK--------GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1503 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--------g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA 1503 (1723)
++.+||+||++.+++.+|++||+.+..... +......++++.++++.+++.+..++++++||||||||++||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 567999999999999999999998754311 112233456788899999999888999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1504 ~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-G-K-HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh-c-C-CEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999985 3 4 58999999999999999999999999999999988874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=386.73 Aligned_cols=208 Identities=32% Similarity=0.537 Sum_probs=183.6
Q ss_pred EEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhccce
Q 000284 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLI 1435 (1723)
Q Consensus 1357 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 1435 (1723)
++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+++|
T Consensus 2 ~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 2 LKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred ceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 68999999631 2469999999999999999999999999999999999999999999999998864 334567789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1436 GYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1436 g~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
||+||++. .++.+|++||+.+.....+......++.+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999974 35678999999876555554444455678889999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCE
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1570 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~ 1570 (1723)
|||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|+
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKA-EG-KTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999864 34 689999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=393.57 Aligned_cols=219 Identities=29% Similarity=0.503 Sum_probs=197.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c-HHHHhc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D-MDEIRK 526 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~-~~~~r~ 526 (1723)
.++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. + ....|+
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence 5899999999953 469999999999999999999999999999999999999999999999998753 2 233567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+||+||++.+++.+||.||+.+..... +.+.++.+++++++++.+|+.+..++++++||||||||++|||||+.+|++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999999999999998765443 344455667889999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999999999999986 5899999999999999999999999999999999987653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=386.68 Aligned_cols=203 Identities=31% Similarity=0.462 Sum_probs=180.8
Q ss_pred EEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceEE
Q 000284 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGV 530 (1723)
Q Consensus 451 ~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~ 530 (1723)
+++||+|.|++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++++||
T Consensus 1 ~~~~l~~~~~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc---CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEE
Confidence 368999999531 469999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 531 CPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 531 ~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
+||++. .+..+|++||+.++....+. .++++.++++.+||.+..++++++||||||||++|||||+.+|+++|||
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 151 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 999974 23467999999886544331 1357889999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEE
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLK 662 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~ 662 (1723)
|||+|||+.+++.++++|++++ +|+|||++||++++++.+|||+++|++|+++
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 152 EPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999984 6899999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=393.22 Aligned_cols=221 Identities=33% Similarity=0.533 Sum_probs=196.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h-HHh
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P-KAA 1431 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~-~~~ 1431 (1723)
+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 6899999999953 4699999999999999999999999999999999999999999999999998642 2 234
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++.+||+||++.+++.+|+.||+.+..... +....+.++.+.++++.+++.+..++++++|||||||||+||+||+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 678999999999998899999998765443 2333345567888999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
++|||||||+|||+.+++.+++.|++++ ++| .|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLR-DSG-LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHH-hcC-CEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999986 344 589999999999999999999999999999999887643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=406.77 Aligned_cols=228 Identities=19% Similarity=0.328 Sum_probs=199.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEccccCCc-c---
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-D--- 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~----p~~G~i~i~g~~i~~-~--- 520 (1723)
.++++||++.|+.+.+...||+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999764333579999999999999999999999999999999999998 489999999999853 2
Q ss_pred HHHHh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHHHH
Q 000284 521 MDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 521 ~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~---~~~~~~~~LSgGqkqrl 593 (1723)
..+.| +.|||+||++ .+++.+|+.+++....... +...++.++++.++++.+||.+ ..++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 22222 4799999998 5889999999987655433 5566677788999999999974 46889999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||+.+|++|||||||+|||+.++++++++|++++ .|.|+|++|||++++..+||||++|.+|++++.|++.++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999985 3899999999999999999999999999999999998886
Q ss_pred hhhCC
Q 000284 672 HQYGV 676 (1723)
Q Consensus 672 ~~~g~ 676 (1723)
+....
T Consensus 243 ~~p~h 247 (326)
T PRK11022 243 RAPRH 247 (326)
T ss_pred hCCCC
Confidence 54433
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=387.44 Aligned_cols=208 Identities=34% Similarity=0.546 Sum_probs=186.2
Q ss_pred EEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcceE
Q 000284 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLG 529 (1723)
Q Consensus 451 ~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ig 529 (1723)
+++||+|.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+|
T Consensus 1 ~~~~l~~~~~~~--~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDG--ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred CceeEEEecCCC--CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce
Confidence 368999999541 1469999999999999999999999999999999999999999999999998753 3455678899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 530 VCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 530 ~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
|+||++. .++.+|++||+.+.....+....+.+++++++++.+||.+..++++++||||||||++|||||+.+|+++||
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999974 356789999998876555555555667889999999999888999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGS 660 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~ 660 (1723)
||||+|||+.+++.+++.|++++ +|+|||++||+++++..+||||++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999986 48999999999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=405.53 Aligned_cols=227 Identities=21% Similarity=0.293 Sum_probs=197.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEEcCeeCCCC-h
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY----PTDGTAFIFGKDIRSD-P 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~----p~~G~i~i~G~~i~~~-~ 1428 (1723)
+|+++||++.|+... +...||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDES--APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCC--ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999997421 22469999999999999999999999999999999999997 4899999999998652 2
Q ss_pred HH----hccceEEEecCC--CCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhHHH
Q 000284 1429 KA----ARRLIGYCPQFD--ALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1429 ~~----~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kq 1498 (1723)
+. .++.|||+||++ .+.+.+|+.+++....... +...++.++++.++++.+||.+ ..++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 22 224799999997 5888999998886654433 4555556678899999999964 468999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
||+|||||+.+|+|||+||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|.+|++++.|+++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g-~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~ 239 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN-MALVLITHDLALVAEAAHKIIVMYAGQVVETGKAH 239 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999975445 68999999999999999999999999999999999
Q ss_pred HHHhh
Q 000284 1579 HLKTR 1583 (1723)
Q Consensus 1579 ~l~~~ 1583 (1723)
++.+.
T Consensus 240 ~~~~~ 244 (326)
T PRK11022 240 DIFRA 244 (326)
T ss_pred HHhhC
Confidence 98754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=388.44 Aligned_cols=212 Identities=27% Similarity=0.490 Sum_probs=188.1
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cH---HHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM---DEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~---~~~r 525 (1723)
++++||++.|+++.+.+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +. ...|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999643223569999999999999999999999999999999999999999999999998753 21 1233
Q ss_pred -cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 -KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 -~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
+.+||+||++.+++.+|++||+.+.....+.+..+.++++.++++.+|+.+..++.+++||||||||++|||||+.+|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999999886555555555556778899999999988899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEE
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLK 662 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~ 662 (1723)
+|||||||+|||+.+++.++++|++++ .|+|||++||++++++. ||||++|++|+++
T Consensus 162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999985 38999999999999976 8999999999974
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=387.19 Aligned_cols=215 Identities=25% Similarity=0.440 Sum_probs=186.8
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH---
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK--- 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~--- 1429 (1723)
+|+++|+++.|+++. +.+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ..
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (221)
T TIGR02211 1 LLKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78 (221)
T ss_pred CEEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHH
Confidence 378999999996421 124699999999999999999999999999999999999999999999999988542 21
Q ss_pred Hhc-cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1430 AAR-RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1430 ~~~-~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
..+ +.+||+||++.+++.+|++||+.+....++....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 123 6799999999999889999999876554444444445677889999999988899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~ 1572 (1723)
+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++. |||+++|++|+++
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN-TSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9999999999999999999999999999864434 589999999999975 8999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=394.07 Aligned_cols=220 Identities=23% Similarity=0.394 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--------
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------- 519 (1723)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 4 NKLNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred ccEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 35899999999953 469999999999999999999999999999999999999999999999988742
Q ss_pred ------cHHHHhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCChhHHH
Q 000284 520 ------DMDEIRKGLGVCPQYDILFPELTVREHLEMFA-VLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKR 591 (1723)
Q Consensus 520 ------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~LSgGqkq 591 (1723)
+....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+|+.+.. ++.+.+|||||||
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 13456788999999999999999999998743 334455556677899999999998764 8889999999999
Q ss_pred HHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 592 KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 592 rl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999986 489999999999999999999999999999999988766
Q ss_pred H
Q 000284 671 K 671 (1723)
Q Consensus 671 k 671 (1723)
.
T Consensus 240 ~ 240 (257)
T PRK10619 240 F 240 (257)
T ss_pred h
Confidence 4
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=399.09 Aligned_cols=225 Identities=25% Similarity=0.423 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eEEEEcCeeCCC-C
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD---GTAFIFGKDIRS-D 1427 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~---G~i~i~G~~i~~-~ 1427 (1723)
+.+|+++|++|.|++. .+.+++++||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++.. .
T Consensus 3 ~~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred CceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCC
Confidence 3579999999999632 2459999999999999999999999999999999999999998 899999999865 3
Q ss_pred hHHhccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1428 PKAARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1428 ~~~~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
....+++|||+||++. +++..|++||+.+.....+.+.++..+++.++++.++|.+..++++++||||||||++||+||
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 3456778999999974 566789999998765556666666667788999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN-LTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999864434 68999999999996 799999999999999999988754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=399.07 Aligned_cols=219 Identities=23% Similarity=0.340 Sum_probs=196.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc---cHHHHh
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIR 525 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r 525 (1723)
+++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....|
T Consensus 1 ml~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 1 MLATSDLWFRYQD----EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76 (271)
T ss_pred CeEEEEEEEEcCC----cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHH
Confidence 3789999999953 459999999999999999999999999999999999999999999999998742 234567
Q ss_pred cceEEEccCCCC-CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 KGLGVCPQYDIL-FPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~ig~~~Q~~~l-~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
+.+||+||++.+ +...|+.||+.+.....+....+..++++++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 889999999753 3456899999887666666666666788999999999988899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999985 5899999999999999999999999999999999987664
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=391.70 Aligned_cols=218 Identities=25% Similarity=0.412 Sum_probs=196.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC-------ccH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-------ADM 521 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~-------~~~ 521 (1723)
.++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ...
T Consensus 2 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYGA----HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEECC----eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH
Confidence 4789999999953 46999999999999999999999999999999999999999999999999863 123
Q ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000284 522 DEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
...|+.+||+||++.+++.+|+.||+.+ .....+...++..+++.++++.+|+.+..++.+.+||||||||++|||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999999975 334455555556678899999999998889999999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999986 489999999999999999999999999999999987654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=397.22 Aligned_cols=222 Identities=27% Similarity=0.480 Sum_probs=194.7
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~---~~~~ 1430 (1723)
+|+++|++++|++ .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 4789999999963 2459999999999999999999999999999999999999999999999999852 2234
Q ss_pred hccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.++.|||+||++. .+..+|+.||+.+.....+....+..+++.++++.++|.+..++++++||||||||++|||||+.+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 5778999999963 333479999998654333444445556788899999999899999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~-~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EG-ITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999864 44 689999999999999999999999999999999998754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=400.16 Aligned_cols=224 Identities=27% Similarity=0.403 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEecCcC--CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--cHHH
Q 000284 448 RCIQIRKLHKVYATKR--GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--DMDE 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~--~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~--~~~~ 523 (1723)
..++++||+|.|++.. +.+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 4699999999997432 13469999999999999999999999999999999999999999999999998854 2345
Q ss_pred HhcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 524 IRKGLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
.++.+|||||++. ++ ..||.||+.+.....+.+..+.+++++++++.+||.+..++++.+||||||||++||+||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 6788999999974 44 46999999987766676667777889999999999999999999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+|+++||||||+|||+.+++.++++|++++ .|+|||++||+++++.. |||+++|++|++.+.|++.++...
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999984 38999999999999986 999999999999999999887543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=386.88 Aligned_cols=218 Identities=25% Similarity=0.409 Sum_probs=189.8
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~- 1430 (1723)
++|+++|++++|+++. ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 5799999999996421 013589999999999999999999999999999999999999999999999988642 221
Q ss_pred --h-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1431 --A-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1431 --~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
. ++.+||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+++.+..++++.+||||||||++||+||+
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 2 3579999999999999999999987655555544455677889999999998889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEe
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI 1574 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~ 1574 (1723)
.+|++|||||||+|||+.+++.+++.|++++++.| +|||++|||+++++. |||+++|++|++++.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG-TTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 99999999999999999999999999999864434 589999999999865 999999999998753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=393.75 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
+.|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 5 PKMEARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred cEEEEeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 57999999999953 469999999999999999999999999999999999974 689999999998853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+.+||+||++.+|+ .||+||+.+.....+. ..+..+++++++++.+|+.+ ..++.+.+|||||||||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 23456788999999998888 5999999887655554 23445678889999999853 468889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999987764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=394.40 Aligned_cols=211 Identities=26% Similarity=0.430 Sum_probs=191.7
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
+++++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+..+
T Consensus 1 ml~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~ 72 (255)
T PRK11248 1 MLQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG----PGAER 72 (255)
T ss_pred CEEEEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC----CCCcE
Confidence 3789999999953 469999999999999999999999999999999999999999999999998753 13458
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||+||++.+++.+||.||+.+.....+....+.++++.++++.+||.+..++++.+||||||||++||+||+.+|++|||
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998876666666666677899999999999888999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHH-h-CCcEEEEEcCCHHHHHhhcCEEEEEe--CCEEEEecCH
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMA--NGSLKCCGSS 667 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~-~-~~~tiil~TH~~~e~~~l~dri~il~--~G~l~~~Gs~ 667 (1723)
||||+|||+.+++.++++|+++ + +|+|||++||+++++..+||||++|+ +|++++.++.
T Consensus 153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999997 3 48999999999999999999999999 5999887764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=386.15 Aligned_cols=208 Identities=31% Similarity=0.567 Sum_probs=188.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc---cHHHHhc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 526 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 526 (1723)
++++||++.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++
T Consensus 1 l~~~~l~~~~~~----~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEECC----eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHh
Confidence 468999999953 469999999999999999999999999999999999999999999999998742 3345678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+||+||++.+++.+|+.||+.++.. .++.+.++.++++.++++.+|+.+..++++.+||||||||++||+||+.+|++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999988643 34555556667889999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
+||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999986 489999999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=393.17 Aligned_cols=222 Identities=22% Similarity=0.398 Sum_probs=196.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC------
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------ 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~------ 1426 (1723)
..|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 35899999999953 469999999999999999999999999999999999999999999999998742
Q ss_pred --------ChHHhccceEEEecCCCCCCCCCHHHHHHHHH-HHcCCChhhHHHHHHHHHHHcCCccc-cCCCCCCCChhH
Q 000284 1427 --------DPKAARRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSFTLSGGN 1496 (1723)
Q Consensus 1427 --------~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~ 1496 (1723)
.....++++||+||++.+++.+|++||+.+.. ...+......++++.++++.+|+.+. .++++.+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 12345678999999999999999999997643 23344444556678889999999876 488999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1497 kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|||++|||||+.+|++|||||||+|||+.+++.+++.|+++++ .| +|||++|||++++..+||||++|++|+++..|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999863 44 689999999999999999999999999999999
Q ss_pred hhHHHh
Q 000284 1577 PQHLKT 1582 (1723)
Q Consensus 1577 ~~~l~~ 1582 (1723)
++++.+
T Consensus 236 ~~~~~~ 241 (257)
T PRK10619 236 PEQLFG 241 (257)
T ss_pred HHHhhh
Confidence 887753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=385.26 Aligned_cols=210 Identities=30% Similarity=0.442 Sum_probs=187.7
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---HH
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---KA 1430 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~~ 1430 (1723)
++++|+++.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ..
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999953 24599999999999999999999999999999999999999999999999988642 1 23
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
.++.++|+||++.+++.+|++||+.+....++...++.++++.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999988766555555555667888999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
+++||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999853 44 5899999999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=390.79 Aligned_cols=204 Identities=32% Similarity=0.448 Sum_probs=182.5
Q ss_pred CccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceEEEe-cCCCCCCCCC
Q 000284 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCP-QFDALLEYLT 1449 (1723)
Q Consensus 1371 ~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~p-Q~~~l~~~lT 1449 (1723)
+.+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......++++||+| |++.+++.+|
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 345799999999999999999999999999999999999999999999999987544445677899998 5577888899
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 000284 1450 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529 (1723)
Q Consensus 1450 v~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~ 1529 (1723)
++||+.+....++....+..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 99999887766666555556677889999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1530 l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
+.+.|++++++.+ +|||++||++++++.+|||+++|.+|++++.|
T Consensus 192 l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 192 IRNFLKEYNRERG-TTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHhcCC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999864434 68999999999999999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=394.02 Aligned_cols=220 Identities=29% Similarity=0.458 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
..++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 6 AIIETENLNLFYTD----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred ceEEEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 47999999999953 3599999999999999999999999999999999999997 59999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCC----CcccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l----~~~~~~~~~~LSgGqkqrl~ 594 (1723)
.....|+.+||+||++.+++ +||+||+.+.....+. .....++++.++++.+++ .+..++++++||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 23456788999999998885 8999999987655443 344556788899999997 34578899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999887754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=399.02 Aligned_cols=222 Identities=31% Similarity=0.448 Sum_probs=196.9
Q ss_pred eEEEEeEEEEecCcCC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHH
Q 000284 449 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMD 522 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~-~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~ 522 (1723)
.++++||++.|+++.. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3789999999964211 1369999999999999999999999999999999999999999999999998753 235
Q ss_pred HHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000284 523 EIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 523 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
..|+.|||+||++ .+++ .||+||+.+.....+.+.++.+++++++++.+||. ...++++.+||||||||++||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 5778899999997 4565 69999998876555666666677889999999997 467999999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999986 4899999999999999999999999999999999987764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=404.76 Aligned_cols=229 Identities=25% Similarity=0.422 Sum_probs=202.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEccccCCc-c---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITA-D--- 520 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~-~--- 520 (1723)
..++++||++.|+.+.+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 57999999999975444467999999999999999999999999999999999999996 9999999999853 2
Q ss_pred HHHHh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcc---cccccCCCChhHHHHH
Q 000284 521 MDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADK---VNIVVRALSGGMKRKL 593 (1723)
Q Consensus 521 ~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~~---~~~~~~~LSgGqkqrl 593 (1723)
....| +.|||+||++ .+++.+|+.+++....... +.+.++..+++.++++.+||.+. .++.+++||||||||+
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence 22334 5799999998 6899999999997765544 45666777889999999999753 4779999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||+.+|++||+||||+|||+.++++++++|+++++ |.|+|++|||++++..+||||++|.+|++++.|++.++.
T Consensus 171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999853 899999999999999999999999999999999998886
Q ss_pred hhhCC
Q 000284 672 HQYGV 676 (1723)
Q Consensus 672 ~~~g~ 676 (1723)
+....
T Consensus 251 ~~p~~ 255 (330)
T PRK09473 251 YQPSH 255 (330)
T ss_pred hCCCC
Confidence 65433
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=393.26 Aligned_cols=221 Identities=29% Similarity=0.451 Sum_probs=196.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCC---c
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNIT---A 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~---~ 519 (1723)
..|+++||+|.|++ +.+++|+||++.+||+++|+||||||||||+++|+|+++| ++|+|.++|.++. .
T Consensus 3 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 3 FAIETVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred ceEEEEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 36899999999953 4699999999999999999999999999999999999997 4999999999885 2
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl 593 (1723)
+....|+++||+||++.+++.+||.||+.+....++. +.+..+++++++++.+|+. +..++.+.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 3345678899999999999999999999887654443 3445566788999999984 356889999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998778999999999999999999999999999999999877643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=392.23 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=196.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc-cHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA-DMD 522 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~-~~~ 522 (1723)
.++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. +..
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 3 KIEIRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred eEEEEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 5899999999953 4699999999999999999999999999999999999984 79999999998853 345
Q ss_pred HHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHHH
Q 000284 523 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSLG 596 (1723)
Q Consensus 523 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~lA 596 (1723)
..|+.+||+||++.+++.+||.||+.+.....+. +.++.++++.++++.+||.+ ..++.+.+||||||||++||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 6678899999999888899999999886554432 34455678899999999853 56889999999999999999
Q ss_pred HHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 597 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999877899999999999999999999999999999999987764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=388.78 Aligned_cols=217 Identities=27% Similarity=0.439 Sum_probs=187.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc----HHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~----~~~~ 524 (1723)
.|+++||++.|+++.+...+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 378999999996431113699999999999999999999999999999999999999999999999988542 2456
Q ss_pred hcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCCH-HHHHHH-HHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHH
Q 000284 525 RKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVKE-ELLESV-VAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 525 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~-v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
|+.+||+||++ .+++.+||+||+.+.....+... ++..++ ++++++.+++. ...++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 78899999998 46778999999987655444322 222223 36889999995 578999999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|++++.|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999985 3 899999999999999999999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=393.08 Aligned_cols=223 Identities=28% Similarity=0.433 Sum_probs=193.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~- 1430 (1723)
.+++++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 47999999999953 4699999999999999999999999999999999999999999999999998652 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHH-------cCC------C--hhhHHHHHHHHHHHcCCccccCCCCCCCChh
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARI-------KGV------A--EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGG 1495 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~-------~g~------~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 1495 (1723)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..+.+.++++.+++.+..++++++||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 345699999999999999999999874321 011 1 1122346778899999988899999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1496 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1496 ~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
||||++||+||+.+|++|||||||+|||+.+++.+++.|.+++++.| +|||++||+++++..+|||+++|++|++++.|
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 99999999999999999999999999999999999999999864434 58999999999999999999999999999999
Q ss_pred ChhHHHh
Q 000284 1576 SPQHLKT 1582 (1723)
Q Consensus 1576 ~~~~l~~ 1582 (1723)
+++++.+
T Consensus 237 ~~~~~~~ 243 (255)
T PRK11300 237 TPEEIRN 243 (255)
T ss_pred CHHHHhh
Confidence 9887643
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=382.84 Aligned_cols=204 Identities=30% Similarity=0.466 Sum_probs=179.3
Q ss_pred EEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccce
Q 000284 1356 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1435 (1723)
Q Consensus 1356 ~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 1435 (1723)
+++|++|+|+++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++++
T Consensus 1 ~~~~l~~~~~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKG-----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSI 73 (205)
T ss_pred CcccEEEEeCCc-----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcce
Confidence 368999999631 459999999999999999999999999999999999999999999999998753 3456789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1436 GYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1436 g~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
||+||++. .+..+|++||+.+.....+. ..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 149 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999974 23457999999876543321 12467889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~ 1572 (1723)
|||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++|+++
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 150 FDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999863 44 58999999999999999999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=393.27 Aligned_cols=219 Identities=27% Similarity=0.412 Sum_probs=195.6
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
+|+++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 2 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence 5889999999953 469999999999999999999999999999999999999999999999998753 33455678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh------c
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI------G 601 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~------~ 601 (1723)
+||+||++.+++.+||+||+.+.....+...++.+++++++++.+|+.+..++.+.+||||||||++||+||+ .
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 9999999988788999999988654333333445567889999999998889999999999999999999999 5
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999985 4899999999999999999999999999999999876653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=394.96 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
++|+++|++|.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.. .....
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 579999999999642 2458999999999999999999999999999999999999999999999999864 34456
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++++||+||++. +++..|+++|+.+.....+.+.++..+.+.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 788999999974 6777899999987655555555555667888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHN-ITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999864334 689999999999986 99999999999999999988754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=402.15 Aligned_cols=229 Identities=24% Similarity=0.407 Sum_probs=199.2
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEEcCeeCCCC-
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT---DGTAFIFGKDIRSD- 1427 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~---~G~i~i~G~~i~~~- 1427 (1723)
+++|+++||++.|+... +...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 10 ~~~L~i~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD--GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCC--CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 45799999999996421 2356999999999999999999999999999999999999996 99999999998652
Q ss_pred hHH---hc-cceEEEecCC--CCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhHH
Q 000284 1428 PKA---AR-RLIGYCPQFD--ALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1428 ~~~---~~-~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~k 1497 (1723)
..+ .| ++|||+||++ .+.+.+|+.+++....... +....+..+++.++++.++|.+ ..++++++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 222 23 5799999997 7889999999987655443 4555556677889999999964 35789999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
||++|||||+.+|++||+||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|.+|++++.|++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g-~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN-TAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999975444 6899999999999999999999999999999999
Q ss_pred hHHHhh
Q 000284 1578 QHLKTR 1583 (1723)
Q Consensus 1578 ~~l~~~ 1583 (1723)
+++.+.
T Consensus 247 ~~i~~~ 252 (330)
T PRK09473 247 RDVFYQ 252 (330)
T ss_pred HHHHhC
Confidence 998754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=395.33 Aligned_cols=223 Identities=28% Similarity=0.438 Sum_probs=195.2
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHH
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA 1430 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~ 1430 (1723)
+.+|+++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 9 ~~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 9 DTTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred CceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 357999999999953 469999999999999999999999999999999999999999999999998754 3445
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH-HcC---CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYAR-IKG---VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
.++.+||+||++.+++.+|+.||+.+... ..+ ......++++.++++.+++.+..++++++|||||||||+||+||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 66789999999888888999999986421 111 11223345678899999998888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+.+|+||||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+||||++|++|+++..|+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999864434 58999999999999999999999999999999887764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=392.13 Aligned_cols=221 Identities=24% Similarity=0.427 Sum_probs=195.2
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~ 1426 (1723)
.++|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 357999999999953 4599999999999999999999999999999999999985 89999999998753
Q ss_pred C---hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 D---PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 ~---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
. ....++.+||+||++.+++ +|++||+.+.....+.+.....+.+.++++.+++. +..++++.+||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 2 2345678999999998887 89999998766555655545556678899999883 45789999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-D-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 4 689999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 240 ~~~ 242 (258)
T PRK14268 240 IFH 242 (258)
T ss_pred Hhc
Confidence 754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=386.47 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=186.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCCh----H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~----~ 1429 (1723)
+|+++|++++|++.. ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999996421 0126999999999999999999999999999999999999999999999999986532 3
Q ss_pred HhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCCh-hhHHHH-HHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHH
Q 000284 1430 AARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAE-YRMDDV-VMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~-~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~ 1504 (1723)
..++++||+||++ .+++.+|++||+.+.....+... ....+. +.++++.+++. ...++++.+||||||||++|||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHH
Confidence 4567899999998 56678999999987654443222 122222 35788999995 5789999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1505 al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999864434 58999999999999999999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=389.01 Aligned_cols=219 Identities=25% Similarity=0.416 Sum_probs=192.0
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-H
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-A 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~-~ 1430 (1723)
++++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 47999999999952 4699999999999999999999999999999999999999999999999988653 22 3
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHc-CCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.++.+||+||++.+++.+|++||+.+..... ...+.++.+.++++.+ ++.+..++++.+||||||||++|||||+.+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 5678999999999998899999998743222 1223344566777877 577778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QG-MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999863 44 58999999999999999999999999999999998875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=393.69 Aligned_cols=229 Identities=23% Similarity=0.351 Sum_probs=196.8
Q ss_pred ceEEEEeEEEEcCCCCc---cCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h
Q 000284 1353 AIIYLRNLRKVYPGGKR---SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P 1428 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~---~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~ 1428 (1723)
++|+++||+|+|++... .+.+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 47999999999963110 1134699999999999999999999999999999999999999999999999998642 3
Q ss_pred HHhccceEEEecCCC--CCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHH
Q 000284 1429 KAARRLIGYCPQFDA--LLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~ 1504 (1723)
...++.+||+||++. +++.+|+.+++.+..... +....+..+.+.++++.+++. ...++++.+|||||||||+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 334567999999974 567889999998765543 334444556788899999994 6778899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1505 al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||+.+|+||||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG-ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999864434 689999999999999999999999999999999888764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=391.28 Aligned_cols=210 Identities=27% Similarity=0.419 Sum_probs=188.0
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
.++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..
T Consensus 10 ~~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~ 79 (257)
T PRK11247 10 GTPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EA 79 (257)
T ss_pred CCcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hh
Confidence 357999999999963 45999999999999999999999999999999999999999999999998753 35
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
++.+||+||++.+++.+|++||+.+.. .. ..++++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 678999999999998899999998642 11 124567789999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
+|||||||+|||+.+++.+++.|+++.++.+ +|||++|||+++++.+||||++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999864444 58999999999999999999999999999888654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=396.20 Aligned_cols=225 Identities=27% Similarity=0.468 Sum_probs=195.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----Ch
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DP 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-----~~ 1428 (1723)
.|+++|++|.|++... ..+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3789999999964210 11459999999999999999999999999999999999999999999999998753 23
Q ss_pred HHhccceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHH
Q 000284 1429 KAARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
...++.|||+||++ .+++ .|++||+.+.....+...++..+.+.++++.++|. ...++++.+||||||||++||+|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 45677899999996 4555 69999998766555555555566778899999997 46799999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SG-MTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999863 44 589999999999999999999999999999999988754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=386.26 Aligned_cols=215 Identities=25% Similarity=0.446 Sum_probs=190.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHH---H
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMD---E 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~---~ 523 (1723)
..|+++||++.|++......+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 469999999999642111359999999999999999999999999999999999999999999999998753 221 2
Q ss_pred H-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 524 I-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 524 ~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
. ++.+||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+++.+..++.+.+||||||||++||+||+.+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 2 367999999999999999999998866555555556677899999999999888999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEE
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKC 663 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~ 663 (1723)
|+++||||||+|||+.+++.++++|++++ + |+|||++||++++++. |||+++|++|++++
T Consensus 165 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 99999999999999999999999999984 3 8999999999999965 99999999999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=388.57 Aligned_cols=220 Identities=26% Similarity=0.399 Sum_probs=195.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-------
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~------- 1426 (1723)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5889999999953 459999999999999999999999999999999999999999999999998731
Q ss_pred ChHHhccceEEEecCCCCCCCCCHHHHHHH-HHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000284 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1427 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
.....+++|||+||++.+++.+|+.||+.+ .....+....+..+.+.++++.+|+.+..++++.+||||||||++||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 123456789999999999999999999975 3334455544455678889999999888899999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++||+++++..+|||+++|.+|+++..|+++++.
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETG-ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHH-HcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999985 344 58999999999999999999999999999999887653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=387.35 Aligned_cols=217 Identities=29% Similarity=0.397 Sum_probs=189.7
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-Hhc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-AAR 1432 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~-~~~ 1432 (1723)
|+++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999963 4699999999999999999999999999999999999999999999999988642 22 235
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcC-CccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD-LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+++||+||++.+++.+|++||+.+.....+.. ..+...++++.++ +.+..++++.+||||||||++||+||+.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999998765544322 1234566777776 5677899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+|||||||+|||+.+++.+++.|++++++.+ +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG-MAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999864334 68999999999999999999999999999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=383.26 Aligned_cols=209 Identities=27% Similarity=0.450 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC---ChHHh
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKAA 1431 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~---~~~~~ 1431 (1723)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999963 459999999999999999999999999999999999999999999999998853 23345
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++++||+||++.+++.+|++||+.+... .++....+.++++.++++.+++.+..++++.+||||||||++||+||+.+|
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 7789999999999988999999987643 345544445567888999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
++|||||||+|||+.+++.+++.|+++++ .| +|||++||++++++.+|||+++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999864 44 5899999999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=389.93 Aligned_cols=201 Identities=27% Similarity=0.468 Sum_probs=183.2
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceEEEc-cCCCCCCCCCH
Q 000284 465 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP-QYDILFPELTV 543 (1723)
Q Consensus 465 ~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv 543 (1723)
.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++.+||+| |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 45799999999999999999999999999999999999999999999999876544445677899998 56788889999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHH
Q 000284 544 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623 (1723)
Q Consensus 544 ~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l 623 (1723)
+||+.+.....+...++.+++++++++.+|+.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99999877777766666677888999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 624 WQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 624 ~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
.++|++++ +++|||++||+++++..+||++++|++|++++.|
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999985 3799999999999999999999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=353.31 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=191.5
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
+.+++++..|+. .==.++++|+.||+++|+||+|||||||+|+|+|...|.+|+|.|+|.|.+... ..++-+.
T Consensus 2 l~L~~V~~~y~~------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAERPVS 74 (231)
T ss_pred ccccceEEeeCc------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccCChh
Confidence 567889999964 334788999999999999999999999999999999999999999999986432 2345699
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
+++|++.||.+|||++|+.++.. .|+. ..+.+++++.++..+||..+.++.+.+||||||||++|||+|+.+-+|++|
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred hhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence 99999999999999999988542 1222 234567899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||+|+|||.-|.++..++.++. ++.|++++||+.+++..++||++++++|++...|+.+++..
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999985 48999999999999999999999999999999999876643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=395.13 Aligned_cols=218 Identities=30% Similarity=0.481 Sum_probs=195.4
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc---cHHHHhc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---DMDEIRK 526 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---~~~~~r~ 526 (1723)
++++||++.|++ .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .....++
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 789999999963 2359999999999999999999999999999999999999999999999998842 2335678
Q ss_pred ceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 527 GLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 527 ~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
.|||+||++. ++ .+||.||+.+.....+...++.++++.++++.+||.+..++++++||||||||++|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 157 (275)
T PRK13639 79 TVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157 (275)
T ss_pred heEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999973 45 46999999876544455566667788999999999998999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999986 4899999999999999999999999999999999987763
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=390.23 Aligned_cols=221 Identities=25% Similarity=0.366 Sum_probs=195.6
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-------
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD------- 1427 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~------- 1427 (1723)
|+++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999963 4599999999999999999999999999999999999999999999999987531
Q ss_pred -------hHHhccceEEEecCCCCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHH
Q 000284 1428 -------PKAARRLIGYCPQFDALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1428 -------~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr 1499 (1723)
....++.+||++|++.+++.+|+.||+.+... ..+.......+.+.++++.+++.+..++.+.+||||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 12457789999999999999999999987432 2344444555678889999999888899999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999864434 689999999999999999999999999999999887
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 234 ~~~ 236 (252)
T TIGR03005 234 IFR 236 (252)
T ss_pred Hhc
Confidence 753
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=392.09 Aligned_cols=219 Identities=26% Similarity=0.412 Sum_probs=195.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
..|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 18 ~~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 18 IKMRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred ceEEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 57999999999953 4699999999999999999999999999999999999975 89999999998853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl 593 (1723)
+....|+.+||+||++.+++. ||.||+.+....++. +..+.++++.++++.+|+.+ ..++.+.+||||||||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred chHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 334567889999999988875 999999887655543 33445677899999999964 46788999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||+.+|++|||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999877889999999999999999999999999999999987764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=388.08 Aligned_cols=218 Identities=25% Similarity=0.436 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cH-HHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r 525 (1723)
..++++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +. ...+
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 4 VMLSFDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred cEEEEEeEEEeeCC----ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHH
Confidence 46999999999953 469999999999999999999999999999999999999999999999998754 22 2357
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-GLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~-~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
+.+||+||++.+++.+||.||+.+..... ...+.+++++++++.+ ++.+..++++++||||||||++|||||+.+|+
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999998754222 2233455677888888 58777888999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999985 5899999999999999999999999999999999987774
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=386.14 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=196.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++|+++.|++ ++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..... .++.+|
T Consensus 1 l~~~~l~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE-----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC-----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcCEE
Confidence 468999999952 28999999999999999999999999999999999999999999999998754222 367899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
||||++.+++.+|+.||+.+.....+.+..+.++++.++++.+||.+..++++.+||||||||++||||++.+|++++||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999987765556666667778899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||+|||+.+++++|++|+++.+ |+|||++||+++++..+||||++|++|++++.|++..+..
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999753 8999999999999999999999999999999999876643
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=398.04 Aligned_cols=222 Identities=30% Similarity=0.444 Sum_probs=195.5
Q ss_pred eEEEEeEEEEecCcCC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc------cH
Q 000284 449 CIQIRKLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA------DM 521 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~-~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~------~~ 521 (1723)
.|+++||+|.|+++.+ ...+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 5899999999964321 1359999999999999999999999999999999999999999999999998742 23
Q ss_pred HHHhcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHH
Q 000284 522 DEIRKGLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIA 598 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~a 598 (1723)
...|+.+||+||++. +++ .|++||+.+.....+...++..+++.++++.++|. +..++++.+||||||||++||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 456788999999973 454 59999998866555555556667788999999995 67899999999999999999999
Q ss_pred HhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 599 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|+.+|++|||||||+|||+.+++.++++|+++. .|+|||++||+++++..+||||++|++|++++.|++.++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999885 3899999999999999999999999999999999887663
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=381.26 Aligned_cols=211 Identities=26% Similarity=0.420 Sum_probs=183.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|+|++ +. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..... .++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~-~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP-ADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-hHcc
Confidence 468999999963 22 39999999999999999999999999999999999999999999999864322 3567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.+............++++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999864332111112334567889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETK-MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999864444 68999999999999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=394.92 Aligned_cols=221 Identities=27% Similarity=0.471 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..++++|++|.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+
T Consensus 6 ~~l~~~nl~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPNS--ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCCC--CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence 479999999999631 2469999999999999999999999999999999999999999999999998853 3456778
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+|||||++. .++.+||+||+.+.....+.+.++.+++++++++.+||.+..++.+.+||||||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 677789999998876555566666677889999999999889999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||||+|||+.+++.++++|++++ + ++|||++||+++++. .|||+++|++|++.+.|++.++.
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999985 3 589999999999996 79999999999999999876653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=389.60 Aligned_cols=221 Identities=24% Similarity=0.421 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCC--
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIR-- 1425 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~-- 1425 (1723)
.+|+++||+|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 46899999999953 4599999999999999999999999999999999999987 4999999999985
Q ss_pred C-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000284 1426 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1426 ~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kq 1498 (1723)
. .....++++||+||++.+++.+|+.||+.+....++. +.+...+.+.++++.+++. +..++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2 3345677899999999999999999999876554443 2334455677889999884 3578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
|++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+||||++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-E-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-C-CEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++.+
T Consensus 234 ~~~~ 237 (253)
T PRK14267 234 KVFE 237 (253)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=391.46 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cH-HHHh
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIR 525 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r 525 (1723)
..++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +. ...+
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (255)
T PRK11300 4 PLLSVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79 (255)
T ss_pred ceEEEeeEEEEECC----EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHh
Confidence 36999999999953 469999999999999999999999999999999999999999999999998854 22 2345
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHh-------cCC--------CHHHHHHHHHHHHHHcCCCcccccccCCCChhHH
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVL-------KGV--------KEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 590 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-------~g~--------~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqk 590 (1723)
..++|+||++.+++.+||+||+.+.... ++. ...+..+++.++++.+|+.+..++++++||||||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence 6799999999999999999999875321 111 1122345688899999999889999999999999
Q ss_pred HHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHH
Q 000284 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 668 (1723)
Q Consensus 591 qrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~ 668 (1723)
||++||+||+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|++++.|++.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 99999999999999999999999999999999999999985 3 899999999999999999999999999999999876
Q ss_pred HH
Q 000284 669 FL 670 (1723)
Q Consensus 669 ~L 670 (1723)
++
T Consensus 240 ~~ 241 (255)
T PRK11300 240 EI 241 (255)
T ss_pred HH
Confidence 65
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=393.59 Aligned_cols=225 Identities=27% Similarity=0.380 Sum_probs=198.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+|+++|++++|++. ..+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 68999999999642 12459999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEEecCCC-CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+.+||+||++. .++..|+.||+.+.....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 88999999974 56678999999876554455555556678889999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|||||||+|||+.+++.+++.|++++++.| +|||++||+++++. .||||++|++|++++.|+++++...
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQ-LTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999864434 68999999999997 5999999999999999999887654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=384.64 Aligned_cols=219 Identities=29% Similarity=0.482 Sum_probs=196.0
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|+++.|++ + +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~------~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE------F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC------c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999952 2 7999999999999999999999999999999999999999999999998865322 3578
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|+.||+.+.....+....+..+.+.++++.++|.+..++++.+|||||||||+|||||+.+|++++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999889999999876555555555556677889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|||||+|||+.+++.+++.|++++.+.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999864434 589999999999999999999999999999999887754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=391.81 Aligned_cols=228 Identities=26% Similarity=0.406 Sum_probs=195.9
Q ss_pred eEEEEeEEEEcCCCC---ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h-
Q 000284 1354 IIYLRNLRKVYPGGK---RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P- 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~---~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~- 1428 (1723)
+|+++||+|.|++.. ..+++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999996310 00135699999999999999999999999999999999999999999999999988642 2
Q ss_pred --HHhccceEEEecCC--CCCCCCCHHHHHHHHHHH-cCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHH
Q 000284 1429 --KAARRLIGYCPQFD--ALLEYLTVQEHLELYARI-KGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSV 1502 (1723)
Q Consensus 1429 --~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~-~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~i 1502 (1723)
...++.|||+||++ .+++.+|++||+.+.... .+......++++.++++.+++. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 22467899999996 466789999999765432 2344434456788899999996 67899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG-TAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 9999999999999999999999999999999999864434 689999999999999999999999999999999988754
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=393.54 Aligned_cols=225 Identities=28% Similarity=0.390 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEecCcC-----CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cH
Q 000284 448 RCIQIRKLHKVYATKR-----GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 521 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~-----~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~ 521 (1723)
.+|+++||+|.|+.+. +.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 4699999999996321 13469999999999999999999999999999999999999999999999998853 33
Q ss_pred HHHhcceEEEccCCC--CCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHH
Q 000284 522 DEIRKGLGVCPQYDI--LFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGI 597 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~ 597 (1723)
...++.+||+||++. +++.+|+.|++.+..... +....+.++++.++++.+||. +..++.+.+||||||||++||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 344568999999975 678889999998765543 445555667889999999995 6678889999999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||+.+|++|||||||+|||+.+++.++++|++++ .|+|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999999999999999999999985 38999999999999999999999999999999999877754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=390.74 Aligned_cols=219 Identities=28% Similarity=0.443 Sum_probs=196.7
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----------
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---------- 519 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---------- 519 (1723)
|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFGI----LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeCC----eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccc
Confidence 468999999953 469999999999999999999999999999999999999999999999988742
Q ss_pred ----cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHH
Q 000284 520 ----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ----~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~ 594 (1723)
.....|+.+||++|++.+++.+|+.||+.+... .++....+.++++.++++.+|+.+..++.+.+||||||||++
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence 123467889999999999999999999987532 345555666678899999999998889999999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999985 3 8999999999999999999999999999999999877643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=392.85 Aligned_cols=222 Identities=23% Similarity=0.323 Sum_probs=194.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
.+|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999963 469999999999999999999999999999999999999999999999998854 33445
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHH-HcC---CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYAR-IKG---VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
++.+||+||++.+++.+|++||+.+... ..+ ...+...+.+.++++.+++.+..++++.+||||||||++|||||+
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 6789999999988888999999976421 111 111233456788999999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKG-YTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999864334 58999999999999999999999999999999988765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=386.55 Aligned_cols=214 Identities=29% Similarity=0.475 Sum_probs=189.5
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cH-HHHhcc
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM-DEIRKG 527 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~-~~~r~~ 527 (1723)
|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. ...++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYGQ----SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeCC----eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhC
Confidence 468999999953 469999999999999999999999999999999999999999999999998753 22 234678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~-l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+||+||++.+++.+|+.||+.+.....+.. .++.++++++.++ +.+..++++.+||||||||++||+||+.+|+++
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999998875544332 1234577788887 567789999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
||||||+|||+.++++++++|+++++ |+|||++||+++++..+||||++|++|++++.|++.++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999863 79999999999999999999999999999999998766
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=390.07 Aligned_cols=220 Identities=26% Similarity=0.429 Sum_probs=196.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~---~ 520 (1723)
.++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 4 ~l~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~ 79 (258)
T PRK14241 4 RIDVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVD 79 (258)
T ss_pred cEEEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccC
Confidence 5899999999953 4699999999999999999999999999999999999974 79999999998742 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....|+.+||++|++.+++.+||+||+.+.....+. +.+..+++++++++.+|+. +..++.+.+||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 345678899999999999999999999887655443 4455667889999999984 46788999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe------CCEEEEecCHHH
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA------NGSLKCCGSSLF 669 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~------~G~l~~~Gs~~~ 669 (1723)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|+ +|++++.|++.+
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~ 239 (258)
T PRK14241 160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239 (258)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHH
Confidence 99999999999999999999999999999999999777999999999999999999999997 899999999877
Q ss_pred HHh
Q 000284 670 LKH 672 (1723)
Q Consensus 670 Lk~ 672 (1723)
+..
T Consensus 240 ~~~ 242 (258)
T PRK14241 240 IFS 242 (258)
T ss_pred HHh
Confidence 643
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=392.25 Aligned_cols=224 Identities=25% Similarity=0.417 Sum_probs=196.7
Q ss_pred eEEEEeEEEEecCcC-----CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c--
Q 000284 449 CIQIRKLHKVYATKR-----GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D-- 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~-----~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~-- 520 (1723)
+|+++||+|.|+... +++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 588999999996321 13579999999999999999999999999999999999999999999999998753 1
Q ss_pred -HHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHH
Q 000284 521 -MDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVL-KGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 -~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~-~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~l 595 (1723)
....|+.+||+||++ .+++.+||+||+.+.... .+...+..++++.++++.+|+. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 223577899999997 467789999999875432 3444445567889999999996 67899999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 999999999999999999999999999999999985 3 8999999999999999999999999999999999877753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=396.13 Aligned_cols=226 Identities=25% Similarity=0.370 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC------C
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS------D 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~------~ 1427 (1723)
.|+++|++|+|++... ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4899999999964210 01359999999999999999999999999999999999999999999999998742 2
Q ss_pred hHHhccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHH
Q 000284 1428 PKAARRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1428 ~~~~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~ 1504 (1723)
....++.|||+||++. +++ .|++||+.+.....+....+..+.+.++++.++|. +..++++.+||||||||++|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 3456778999999963 444 69999998765444554444556678899999994 6789999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1505 al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||+.+|++|||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK-KRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999864434 689999999999999999999999999999999988753
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=383.74 Aligned_cols=220 Identities=33% Similarity=0.522 Sum_probs=197.2
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++++|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++..... .++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-HKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-hhcc
Confidence 468999999953 469999999999999999999999999999999999999999999999998865332 3578
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.+....++......++.+.++++.+++.+..++.+.+||||||||++|||||+.+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999998889999999876655555555556677889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~-~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELG-ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999864334 589999999999999999999999999999999887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=390.26 Aligned_cols=220 Identities=31% Similarity=0.492 Sum_probs=196.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~--- 519 (1723)
+.|+++|++|.|+. +.+++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|+++|.++..
T Consensus 11 ~~l~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 11 EVYQINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred ceEEEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 57999999999953 469999999999999999999999999999999999997 3 69999999998752
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+.+||+||++.+++. |++||+.+.....+. ..++.+++++++++.+++.+ ..++.+.+||||||||++
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 334567889999999988886 999999887655553 34555677889999999853 468899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999887643
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=386.82 Aligned_cols=217 Identities=28% Similarity=0.407 Sum_probs=191.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
.|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5899999999953 459999999999999999999999999999999999999999999999998854 334567
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+.+||+||++.+++ .|++||+.+....++. ..+++.++++.+++. +..++++.+||||||||++||+||+.+|+
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKGE----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcCc----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 78999999998886 6999999865433321 234577889999996 57889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+||||++|++|+++..|+++++..
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999999999864345 589999999999999999999999999999999988754
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=352.15 Aligned_cols=220 Identities=24% Similarity=0.418 Sum_probs=204.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc--------
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-------- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-------- 519 (1723)
..++++||.|.|+ ...+|+++||+-++|+++.|+|.+||||||++++|.=+..|+.|.|.++|.+++.
T Consensus 5 ~~l~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l 80 (256)
T COG4598 5 NALEVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80 (256)
T ss_pred cceehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCe
Confidence 4689999999995 4569999999999999999999999999999999999999999999999998741
Q ss_pred ------cHHHHhcceEEEccCCCCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHH
Q 000284 520 ------DMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 592 (1723)
Q Consensus 520 ------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqr 592 (1723)
+...+|.++|+|+|+..||.+|||.||+.- ....-|.++.++.++++.+|.++|+.++.+.++..|||||+||
T Consensus 81 ~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR 160 (256)
T COG4598 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQR 160 (256)
T ss_pred eeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHH
Confidence 245688899999999999999999999753 4456689999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 593 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
++|||||+.+|+++++|||||+|||+-.-++...++++. +|||++++||.|.+|..++..|+.+++|++-+.|+|+++-
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 999999999999999999999999999999999999996 6999999999999999999999999999999999997763
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=387.68 Aligned_cols=220 Identities=21% Similarity=0.344 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-C
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-D 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~-~ 1427 (1723)
+++++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999963 4599999999999999999999999999999999999974 79999999999864 3
Q ss_pred hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHHH
Q 000284 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKLS 1501 (1723)
Q Consensus 1428 ~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrl~ 1501 (1723)
....++.|||+||++.+++.+|++||+.+.....+. +..+..+.+.++++.+++.+ ..++++.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445677899999999888889999999876544332 23344567788999999853 578999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1502 iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-D-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999984 3 4 58999999999999999999999999999999998875
Q ss_pred h
Q 000284 1582 T 1582 (1723)
Q Consensus 1582 ~ 1582 (1723)
+
T Consensus 234 ~ 234 (250)
T PRK14247 234 T 234 (250)
T ss_pred c
Confidence 4
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=390.26 Aligned_cols=220 Identities=27% Similarity=0.406 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 12 ~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 46999999999953 369999999999999999999999999999999999986 589999999998752
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+++||+||++.+++ .|++||+.+..... +.+.++.+++++++++.+++. +..++.+.+||||||||++
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 34466789999999998887 79999998865543 456666677899999999984 4568889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|++|||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999778899999999999999999999999999999999877643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=384.71 Aligned_cols=219 Identities=23% Similarity=0.397 Sum_probs=190.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+++++||+|+|++ + ..++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++..... .++
T Consensus 1 ~l~~~~l~~~~~~------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRR 71 (232)
T ss_pred CeEEEEEEEEECC------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhc
Confidence 4789999999963 1 238999999999999999999999999999999999999999999998764322 356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
.+||+||++.+++.+|+.||+.+.........+..++++.++++.+++.+..++++.+||||||||++||+||+.+|++|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999998999999976432111112233556888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999864434 589999999999999999999999999999999888764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=392.89 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=199.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
+.++++|++|.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+
T Consensus 6 ~~l~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 6 SIIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred ceEEEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 479999999999642 2359999999999999999999999999999999999999999999999998853 4456778
Q ss_pred ceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+|||||++. +++..|+.+|+.+.....+.+.+...++++++++.+|+.+..++.+.+||||||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999985 677889999998876655666666677889999999999889999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+||||||+|||+.+++.++++|++++ + |+|||++||+++++.. ||||++|++|++++.|++.++..
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999985 3 8999999999999986 99999999999999999877643
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=388.03 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=192.9
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~ 1426 (1723)
.++|+++|++++|++ +.+++++||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 367999999999953 459999999999999999999999999999999999974 689999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHH
Q 000284 1427 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1427 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kq 1498 (1723)
.....++++||+||++.+++ .|++||+.+....++.. .+..++++.++++.+++.+ ..++++.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 23345778999999998887 59999998765555542 2334567788899999853 468899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
||+|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+||||++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-R-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++.+
T Consensus 234 ~~~~ 237 (253)
T PRK14242 234 QIFT 237 (253)
T ss_pred HHHc
Confidence 8754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=384.64 Aligned_cols=218 Identities=30% Similarity=0.473 Sum_probs=198.5
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++||++.|+. +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ..++.+|
T Consensus 1 l~~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcceE
Confidence 468999999953 46999999999999999999999999999999999999999999999999875422 2367899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
||||++.+++.+|+.||+.+.....+.+....+++++++++.+|+.+..++.+.+||||||||++|||||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999988766666666666778899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||+|||+.+++.++++|+++++ |+|||++||+++++..+|||+++|++|++.+.|++.++.+
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999863 8999999999999999999999999999999998876654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=381.19 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=183.9
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
|+++|++|.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.+|
T Consensus 1 i~~~~l~~~~~~----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHccEE
Confidence 468999999953 22 3999999999999999999999999999999999999999999999875322 2357899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.+.........++.++++.++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999987543211112334567899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.++++|++++ .|+|||++||+++++..+||||++|++|++++.|
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999985 3899999999999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=400.85 Aligned_cols=228 Identities=21% Similarity=0.304 Sum_probs=193.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEEcCeeCCC-C
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY----PTDGTAFIFGKDIRS-D 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~----p~~G~i~i~G~~i~~-~ 1427 (1723)
++|+++||+|.|+... +...+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 2 ~~L~v~~l~~~y~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 2 PLLDIRNLTIEFKTSD--GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred CeEEEeeeEEEEeCCC--CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 3689999999996421 23569999999999999999999999999999999999997 589999999999864 2
Q ss_pred hHH----hccceEEEecCCC--CCCCCCHHHHHHHHHHH---cCC---ChhhHHHHHHHHHHHcCCcc---ccCCCCCCC
Q 000284 1428 PKA----ARRLIGYCPQFDA--LLEYLTVQEHLELYARI---KGV---AEYRMDDVVMEKLVEFDLLK---HAKKPSFTL 1492 (1723)
Q Consensus 1428 ~~~----~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~---~g~---~~~~~~~~~~~~l~~~~l~~---~~~~~~~~L 1492 (1723)
... .++.|||+||++. +.+.+|+.+++...... .+. ...+.++++.++|+.++|.+ ..++++.+|
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 222 2357999999974 67889999999753221 121 11234567889999999974 468999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEE
Q 000284 1493 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572 (1723)
Q Consensus 1493 SgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~ 1572 (1723)
||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++.++.| .|||++|||++++..+||||++|.+|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g-~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN-TTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999965444 68999999999999999999999999999
Q ss_pred EecChhHHHhh
Q 000284 1573 CIGSPQHLKTR 1583 (1723)
Q Consensus 1573 ~~g~~~~l~~~ 1583 (1723)
+.|+++++.+.
T Consensus 239 e~g~~~~i~~~ 249 (330)
T PRK15093 239 ETAPSKELVTT 249 (330)
T ss_pred EECCHHHHHhC
Confidence 99999888653
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=386.88 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=195.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEccccCCc-cHHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITA-DMDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~-~~~~~ 524 (1723)
.|+++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. +....
T Consensus 2 ~~~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGK----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 4789999999953 469999999999999999999999999999999999984 799999999998854 34566
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHHHHH
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSLGIA 598 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~lA~a 598 (1723)
|+.+||+||++.+|+ .|++||+.++...++. ..+..++++.++++.+++. +..++.+.+||||||||++||||
T Consensus 78 ~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 78 RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 788999999999987 6999999987655543 2244566788999999995 34688899999999999999999
Q ss_pred HhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 599 LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 599 l~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998778999999999999999999999999999999999877643
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=383.45 Aligned_cols=205 Identities=29% Similarity=0.489 Sum_probs=180.2
Q ss_pred EEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceEEE
Q 000284 452 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531 (1723)
Q Consensus 452 i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~ 531 (1723)
++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..++.+||+
T Consensus 2 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYV 73 (213)
T ss_pred cccceeEECC----EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEe
Confidence 6799999953 46999999999999999999999999999999999999999999999998764 356789999
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 532 PQYDILF--PELTVREHLEMFAVLKG----VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 532 ~Q~~~l~--~~lTv~e~l~~~~~~~g----~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
||++.++ ..+||+||+.+.....+ ...+..+++++++++.+|+.+..++++.+||||||||++|||||+.+|++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9998763 34799999987543211 12234556789999999999888999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
+||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+||||++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999986 6899999999999999999999999886 54443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=393.50 Aligned_cols=222 Identities=26% Similarity=0.362 Sum_probs=199.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++||++.|+++. ...+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. .....++.
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 689999999996421 2459999999999999999999999999999999999999999999999998853 34466789
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+||+||++. +++..||.||+.+.....+...++..++++++++.+||.+..++++.+||||||||++|||||+.+|+++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999974 5677899999987665556666666778899999999998899999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||||+|||+.+++.++++|+++.+ |+|||++||+++++. .||||++|++|++++.|++.++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999853 899999999999997 599999999999999999877654
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=369.22 Aligned_cols=237 Identities=29% Similarity=0.437 Sum_probs=215.7
Q ss_pred eEEEEeEEEEecC-----------------cCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 000284 449 CIQIRKLHKVYAT-----------------KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 511 (1723)
Q Consensus 449 ~i~i~~l~k~y~~-----------------~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~ 511 (1723)
+|.++||+|.|.- +.....||+|+||+|++|++++++|+||||||||+|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 5667777777742 12235699999999999999999999999999999999999999999999
Q ss_pred EccccCCccHHHHhcceEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHH
Q 000284 512 VFGKNITADMDEIRKGLGVCP-QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 590 (1723)
Q Consensus 512 i~g~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqk 590 (1723)
|+|++...+.++.-+++|+|. |.-.+|.++-+.|-+.....++.++.++.+++.+.+.+.++|+...+.+++.||-|||
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqR 162 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHH
Confidence 999998776666667788875 7777888888999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHH
Q 000284 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 668 (1723)
Q Consensus 591 qrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~ 668 (1723)
+|+.||.||+++|+||+|||||-|||..++..+.++|+++. .+.||++|||+|+.+..+||||+.|++|+++..|+..
T Consensus 163 mraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA 242 (325)
T ss_pred HHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHH
Confidence 99999999999999999999999999999999999999985 4899999999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEEEEec
Q 000284 669 FLKHQYGVGYTLTLVKS 685 (1723)
Q Consensus 669 ~Lk~~~g~gy~l~~~~~ 685 (1723)
.|+.+||..-.+.+...
T Consensus 243 ~l~~~f~~~k~~~~el~ 259 (325)
T COG4586 243 QLQEQFGPYKEFSVELK 259 (325)
T ss_pred HHHHHhCCceEEEEEEc
Confidence 99999999877776654
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=387.71 Aligned_cols=220 Identities=26% Similarity=0.431 Sum_probs=196.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~---~ 520 (1723)
.|+++|++|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .
T Consensus 4 ~l~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 5899999999953 469999999999999999999999999999999999986 4 69999999998853 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~l 595 (1723)
....|+.+||+||++.+++.+|+.||+.+.....+ .+..+.+++++++++.+++.. ..++.+.+||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 34567889999999999999999999987655444 234455677899999999853 4578899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|++|||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999877899999999999999999999999999999999877654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=405.04 Aligned_cols=214 Identities=21% Similarity=0.366 Sum_probs=190.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----h
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----P 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-----~ 1428 (1723)
||++ ||+|+|++ + .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 4677 99999963 2 23 89999999999999999999999999999999999999999999987531 2
Q ss_pred HHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1429 ~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
...++++||+||++.+++.+||+||+.+... ...++++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2346789999999999999999999986432 1224567889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
+|++|||||||+|||+.+++.+++.|+++.++.| +|||++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999865434 6899999999999999999999999999999999998754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=391.94 Aligned_cols=220 Identities=24% Similarity=0.352 Sum_probs=195.2
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...+.++
T Consensus 10 ~~l~i~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 10 TTFALRNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred ceEEEeeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 47999999999953 469999999999999999999999999999999999999999999999998743 3455678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcC---CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAV-LKG---VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~g---~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
.+||+||++.+++.+|+.||+.+... ..+ ......+++++++++.+++.+..++++++||||||||++|||||+.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 89999999888889999999987431 111 11233456789999999999888999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999985 3 899999999999999999999999999999999876653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=388.77 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=193.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+++++|++++|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5899999999953 469999999999999999999999999999999999999999999999998754 334556
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHH----HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYAR----IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~----~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
+.+||+||++.+++.+|+.||+.+... ..+.......+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 789999999988888999999986421 1222223344567888999999888999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNT-QG-KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999999999999853 44 58999999999999999999999999999999887764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=393.67 Aligned_cols=221 Identities=28% Similarity=0.442 Sum_probs=199.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEccccCCc-cHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT---GDALVFGKNITA-DMDE 523 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~---G~i~i~g~~i~~-~~~~ 523 (1723)
..|+++|++|.|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.. ....
T Consensus 4 ~~l~i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 4 NIVEFKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred ceEEEEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 469999999999642 2359999999999999999999999999999999999999998 899999998854 3345
Q ss_pred HhcceEEEccCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 524 IRKGLGVCPQYDI-LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 524 ~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
.++++|||||++. +++.+||.||+.+.....+.+.++.++++.++++.+||.+..++++++||||||||++||+||+.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 6788999999974 677889999998776666777777778899999999999989999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++. .|||+++|++|++++.|++.++.
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999985 3 899999999999996 79999999999999999987764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=382.38 Aligned_cols=230 Identities=28% Similarity=0.491 Sum_probs=206.1
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-C----CcceEEEccccCCc----c
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-P----TTGDALVFGKNITA----D 520 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-p----~~G~i~i~g~~i~~----~ 520 (1723)
++++||+..|....+...||+||||++++||++||+|++|||||||.+.|.|+++ | ++|+|.++|.|+.. .
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6899999999876666789999999999999999999999999999999999998 4 58999999998853 2
Q ss_pred HHHHh-cceEEEccCC--CCCCCCCHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHHH
Q 000284 521 MDEIR-KGLGVCPQYD--ILFPELTVREHLEMFAVLKG-V-KEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRK 592 (1723)
Q Consensus 521 ~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g-~-~~~~~~~~v~~~l~~~~l~~---~~~~~~~~LSgGqkqr 592 (1723)
+.++| +.|+++||++ .|.|-+||.+.+.-.....+ . .++++++++.++|+.+||++ ..+.++++||||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 33555 6799999997 68999999999876666543 3 46778899999999999986 4599999999999999
Q ss_pred HHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 593 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|.||+||+.+|++||.||||++||+..+.++.++|++++ .|.|+|++|||+..+.++||||+||..|++++.|+..++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 999999999999999999999999999999999999996 489999999999999999999999999999999999888
Q ss_pred HhhhCCcEE
Q 000284 671 KHQYGVGYT 679 (1723)
Q Consensus 671 k~~~g~gy~ 679 (1723)
.+....-|+
T Consensus 242 ~~~P~HPYT 250 (316)
T COG0444 242 FKNPKHPYT 250 (316)
T ss_pred hcCCCChHH
Confidence 776666554
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=386.92 Aligned_cols=219 Identities=29% Similarity=0.434 Sum_probs=195.6
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
+.++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 3 IKMESKNLNLWYGE----KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred cEEEEEEeEEEECC----eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 57899999999953 4699999999999999999999999999999999999875 89999999998853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....++.+||+||++.+++ +|++||+.+.....+. ...+.+++++++++.+|+. +..++.+.+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 23456788999999999887 8999999987665554 3445567788999999884 3568889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999877799999999999999999999999999999999987764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=387.24 Aligned_cols=220 Identities=25% Similarity=0.419 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~- 1426 (1723)
.+|+++|++++|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999953 4589999999999999999999999999999999999997 59999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCC----ccccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDL----LKHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~kqr 1499 (1723)
.....+++|||+||++.+++ +|++||+.+.....+. .....++.+.++++.+++ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23346778999999988875 8999999886554443 233445667888898887 345789999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.++++|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-S-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 4 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 236 ~~~ 238 (254)
T PRK14273 236 LFF 238 (254)
T ss_pred HHh
Confidence 864
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=401.07 Aligned_cols=225 Identities=24% Similarity=0.325 Sum_probs=194.8
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEccccCCc-cHH-
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DMD- 522 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~----p~~G~i~i~g~~i~~-~~~- 522 (1723)
.++++||+|.|+.+.+...||+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. ...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999754444679999999999999999999999999999999999997 589999999998853 222
Q ss_pred --HH-hcceEEEccCCC--CCCCCCHHHHHHHHHHh---cCC---CHHHHHHHHHHHHHHcCCCc---ccccccCCCChh
Q 000284 523 --EI-RKGLGVCPQYDI--LFPELTVREHLEMFAVL---KGV---KEELLESVVAEMVDEVGLAD---KVNIVVRALSGG 588 (1723)
Q Consensus 523 --~~-r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~---~g~---~~~~~~~~v~~~l~~~~l~~---~~~~~~~~LSgG 588 (1723)
.. ++.|||+||++. +++.+||.+++...... .+. ...+.++++.++|+.+||.+ ..++.+.+||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 22 357999999985 68889999999764321 121 22345678899999999975 358899999999
Q ss_pred HHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecC
Q 000284 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 589 qkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs 666 (1723)
|||||+||+||+.+|++|||||||+|||+.++++++++|+++++ |.|||++|||++++..+||||++|.+|++++.|+
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999863 8999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 000284 667 SLFLKHQ 673 (1723)
Q Consensus 667 ~~~Lk~~ 673 (1723)
+.++.+.
T Consensus 243 ~~~i~~~ 249 (330)
T PRK15093 243 SKELVTT 249 (330)
T ss_pred HHHHHhC
Confidence 9887554
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=383.20 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=196.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
++++|++++|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcC
Confidence 468999999963 46999999999999999999999999999999999999999999999999886422 34678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+|||||++.+++.+|+.||+.+....++.......+.+.++++.+++.+..++.+.+||||||||++||+||+.+|++++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999889999999876555554444445667889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|||||+|||+.+++.+++.|++++++.+ +|||++||++++++.+|||+++|++|++++.|+++++++
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRKLHDEVH-VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999864324 689999999999999999999999999999999988864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=377.73 Aligned_cols=212 Identities=22% Similarity=0.401 Sum_probs=185.5
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
++++||+|.|+. .++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA-PYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC-hhccc
Confidence 368999999952 467999999999999999999999999999999999999999999999986422 35678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|+.||+.+............++++.++++.+++.+..++++.+||||||||++|||||+.+|+++|
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 151 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL 151 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999989999999764332111122234567889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|||||+|||+.+++.+++.|+++.++.+ +|||++||+++++..+|||+++|++|++++.|.
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQLCSERQ-RTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999864434 689999999999999999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=384.56 Aligned_cols=218 Identities=27% Similarity=0.427 Sum_probs=197.9
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 i~i~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS----FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRKIG 75 (237)
T ss_pred CEEEEEEEEECC----eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcCEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987532 23467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
||||++.+|+.+|+.||+.+.....+.......++++++++.+++.+..++.+.+||||||||++||+||+.+|+++|||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999987766555555555678899999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||+|||+.+++.++++|+++++ ++|||++||+++++..+||||++|++|++++.|++.++++
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999854 7999999999999999999999999999999999888754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=389.15 Aligned_cols=218 Identities=21% Similarity=0.322 Sum_probs=193.7
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
+++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.
T Consensus 1 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 1 GLRLSRVSWSAGG----RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred CceEEeEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 3789999999953 469999999999999999999999999999999999999999999999998754 34456678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHH-h---cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAV-L---KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~-~---~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
+||+||++.+++.+||+||+.++.. . .+....+..+++.++++.+++.+..++.+.+||||||||++||+||+.+|
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred eEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999987888999999987531 1 12222334567899999999998889999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|+++..|++.++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999986 489999999999999999999999999999999987655
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=388.41 Aligned_cols=219 Identities=26% Similarity=0.402 Sum_probs=192.7
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
|+++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 679999999953 469999999999999999999999999999999999999999999999998865 3344566
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHH-H---cCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcC
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYAR-I---KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~-~---~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
.+||+||++.+++.+|++||+.+... . .+....+..+++.++++.+++.+..++++.+||||||||++||+||+.+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 79999999877788999999987421 1 1222223345678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|+++||||||+|||+.+++.++++|++++ ++| +|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELA-ATG-VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHH-hcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 99999999999999999999999999986 344 58999999999999999999999999999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=388.08 Aligned_cols=206 Identities=29% Similarity=0.420 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..|+++||++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ...++.
T Consensus 11 ~~l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~----~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL----AEARED 82 (257)
T ss_pred CcEEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH----HHhhCc
Confidence 56999999999953 4699999999999999999999999999999999999999999999998764 245678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+||+||++.+++.+||+||+.+... + ..++++.++++.+||.+..++++.+||||||||++|||||+.+|+++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998999999987421 1 134678899999999988899999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCH
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~ 667 (1723)
|||||+|||+.+++.++++|+++. .|+|||++||+++++..+||||++|++|++++.|+.
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 999999999999999999999873 489999999999999999999999999999987764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=387.92 Aligned_cols=221 Identities=25% Similarity=0.425 Sum_probs=193.5
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~ 1426 (1723)
+..|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 457999999999963 4599999999999999999999999999999999999975 89999999999853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHH
Q 000284 1427 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1427 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~k 1497 (1723)
.....++.+||+||++.+++. |+.||+.+....++. +..+..+++.++++.+++.+ ..++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567789999999888874 999999876554443 23334566788999999953 46788999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + .|||++||++++++.+|||+++|++|++++.|++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~-~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-N-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-C-CeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999985 3 4 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 88754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=389.41 Aligned_cols=221 Identities=24% Similarity=0.414 Sum_probs=193.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEEcCeeCCCC--
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT---DGTAFIFGKDIRSD-- 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~---~G~i~i~G~~i~~~-- 1427 (1723)
++|+++||++.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47999999999953 46999999999999999999999999999999999999987 49999999987531
Q ss_pred ----hHHhccceEEEecCCCCCCCCCHHHHHHHHHHH--------cCCChhhHHHHHHHHHHHcCCccccCCCCCCCChh
Q 000284 1428 ----PKAARRLIGYCPQFDALLEYLTVQEHLELYARI--------KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGG 1495 (1723)
Q Consensus 1428 ----~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~--------~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 1495 (1723)
....++++||+||++.+++.+|++||+.+.... .+....+.++++.++++.+++.+..++++.+||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 234567899999999999999999999764320 01112334567888999999988889999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1496 NKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1496 ~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||||+.+|+||||||||+|||+.+++.+++.|+++++++| +|||++||+++++..+|||+++|++|++++.|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG-ITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864444 68999999999999999999999999999999
Q ss_pred ChhHH
Q 000284 1576 SPQHL 1580 (1723)
Q Consensus 1576 ~~~~l 1580 (1723)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 98775
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=388.99 Aligned_cols=218 Identities=26% Similarity=0.400 Sum_probs=194.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
+++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +....++.
T Consensus 2 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYGT----KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEECC----EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence 4789999999953 469999999999999999999999999999999999999999999999988743 34456678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAV----LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~----~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
+||+||++.+++.+|+.||+.+... ..+......+++++++++.+|+.+..++.+.+||||||||++||||++.+|
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998989999999987421 122222344567889999999998889999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999999999999985 589999999999999999999999999999999887655
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=381.46 Aligned_cols=206 Identities=28% Similarity=0.456 Sum_probs=178.5
Q ss_pred EEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceE
Q 000284 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1436 (1723)
Q Consensus 1357 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig 1436 (1723)
++||+|+|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..++++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIG 71 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheE
Confidence 6899999953 45999999999999999999999999999999999999999999999998764 3567899
Q ss_pred EEecCCCCC--CCCCHHHHHHHHHHHcC----CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1437 YCPQFDALL--EYLTVQEHLELYARIKG----VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1437 ~~pQ~~~l~--~~lTv~e~l~~~~~~~g----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
|+||++.+. ..+|++||+.+.....+ ......++++.++++.+++.+..++++.+||||||||++||+||+.+|
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998763 23799999987433211 122334567788999999988889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+|||+++|++| +++.|
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRR-EG-MTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999864 44 58999999999999999999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=404.30 Aligned_cols=214 Identities=21% Similarity=0.341 Sum_probs=189.9
Q ss_pred eEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----hHHhcc
Q 000284 1359 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----PKAARR 1433 (1723)
Q Consensus 1359 ~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-----~~~~~~ 1433 (1723)
||+|+|++ +. + |+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999963 23 4 89999999999999999999999999999999999999999999988532 123567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
++||+||++.+++.+||+||+.+..... ...+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 8999999999999999999998754322 22334556888999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
||||||+|||+.+++.+++.|++++++.| +|||++|||++++..+|||+++|++|++++.|+++++..+
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 99999999999999999999999865434 6899999999999999999999999999999999998754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=390.08 Aligned_cols=219 Identities=25% Similarity=0.378 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 12 ~~l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 47999999999953 469999999999999999999999999999999999987 699999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
+....|+.+||+||++.+++. ||+||+.+.....+... ..++++.++++.+++. +..++++.+||||||||++|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 345667889999999998884 99999998776555432 3456778889998873 45788999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC-----------CEEEEe
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMAN-----------GSLKCC 664 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~-----------G~l~~~ 664 (1723)
||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++ |+++..
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 999999999999999999999999999999999997789999999999999999999999996 678888
Q ss_pred cCHHHHHh
Q 000284 665 GSSLFLKH 672 (1723)
Q Consensus 665 Gs~~~Lk~ 672 (1723)
|++.++..
T Consensus 246 ~~~~~~~~ 253 (269)
T PRK14259 246 NETKKIFN 253 (269)
T ss_pred CCHHHHHh
Confidence 98877643
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=385.50 Aligned_cols=215 Identities=30% Similarity=0.443 Sum_probs=192.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|+.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 4889999999953 369999999999999999999999999999999999999999999999998753 34456788
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
+||+||++.+++ .|++||+.+....++. .++++.++++.+|+. +..++.+.+||||||||++|||||+.+|+++
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 79 IGMVFQQPHLFE-GTVKDNIEYGPMLKGE----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred EEEEecCchhch-hhHHHHHhcchhhcCc----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998887 6999999875443321 235678899999997 5678999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||||+|||+.+++.+++.|++++ .|+|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999999985 38999999999999999999999999999999999877643
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=384.82 Aligned_cols=220 Identities=28% Similarity=0.448 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC---CCC--CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL---IPP--TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl---~~p--~~G~i~i~g~~i~~--- 519 (1723)
..++++|++|.|+. +.+++|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 46899999999953 4699999999999999999999999999999999997 465 59999999998853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~ 594 (1723)
+....++.+||+||++.+++ .|+.||+.+....++.. .+..+++++++++.+|+.+ ..++++.+||||||||++
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 78 QVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred cHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence 23456788999999998887 59999998876555543 3345677899999999854 468889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999999778999999999999999999999999999999999887754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=347.75 Aligned_cols=219 Identities=28% Similarity=0.457 Sum_probs=194.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+|.+++++..|+. .==..+++|+.||+++|+||+|||||||+++|+|.+.|.+|+|.|+|+|....+ -.+|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccC
Confidence 3668899999963 223578999999999999999999999999999999999999999999986532 2356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
-+++++|++.||..+||.+|+.+... .|+. ....+++++..+.++||..+.++.+.+|||||||||++||+|+++-+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe
Confidence 69999999999999999999987432 2322 233456788899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhh
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~ 1583 (1723)
|+||||+++|||.-|.++..++.+++.+++ .|++++||..+++.+++||++++++|||.+.|+.+++.+.
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~-~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERK-MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999987765 6899999999999999999999999999999999988754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=404.38 Aligned_cols=211 Identities=24% Similarity=0.425 Sum_probs=190.0
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHHHH
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDEI 524 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~~ 524 (1723)
|++ ||+|.|++ + .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 l~~-~l~k~~~~----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 2 LEL-NFKQQLGD----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred eEE-EEEEEeCC----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchh
Confidence 567 99999953 2 23 8999999999999999999999999999999999999999999998753 13345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
++++|||||++.+|+.+||+||+.+... ...+++++++++.+||.+..++++++||||||||++|||||+.+|+
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 7789999999999999999999987532 1234678999999999998999999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+|||||||+|||+.+++.+++.|+++. + |+|||++||+++++..+||||++|++|++.+.|++.++.+.
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 999999999999999999999999985 3 89999999999999999999999999999999999888654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=385.22 Aligned_cols=218 Identities=29% Similarity=0.486 Sum_probs=194.5
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~---~ 520 (1723)
.|+++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. +
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 3 KISVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred eEEEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4889999999953 3699999999999999999999999999999999999863 79999999998853 3
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....|+.+||+||++.+++ +|+.||+.+.....+. +.+..+++++++++.+++. +..++++.+||||||||++|
T Consensus 79 ~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred hHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 3456788999999998887 8999999987655554 3345667888999999874 35688899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999977899999999999999999999999999999999987764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=385.30 Aligned_cols=219 Identities=24% Similarity=0.343 Sum_probs=190.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEccccCCc-cHHH-Hh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI--PPTTGDALVFGKNITA-DMDE-IR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~--~p~~G~i~i~g~~i~~-~~~~-~r 525 (1723)
|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.++.. .... .+
T Consensus 1 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR01978 1 LKIKDLHVSVED----KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR 76 (243)
T ss_pred CeEeeEEEEECC----EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhc
Confidence 468999999953 46999999999999999999999999999999999995 7999999999998753 2222 34
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHcCCC-cccccccC-CCChhHHHHHHHH
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKG-------VKEELLESVVAEMVDEVGLA-DKVNIVVR-ALSGGMKRKLSLG 596 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g-------~~~~~~~~~v~~~l~~~~l~-~~~~~~~~-~LSgGqkqrl~lA 596 (1723)
..++|+||++.+++.+|++||+.+...... .+..+..+++.++++.+||. ...++.+. +|||||||||+||
T Consensus 77 ~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 77 AGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred cceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence 569999999999999999999987544321 12334456789999999997 45678887 5999999999999
Q ss_pred HHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEEEecCHHHHHh
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEEL-GDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 597 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l-~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+ |||+++|++|++...|+++++..
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKE 234 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhcc
Confidence 99999999999999999999999999999999986 589999999999999998 89999999999999999876654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=385.93 Aligned_cols=221 Identities=24% Similarity=0.395 Sum_probs=194.4
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~ 1426 (1723)
..+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 357999999999963 459999999999999999999999999999999999986 589999999999853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc-CCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000284 1427 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK-GVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1427 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kq 1498 (1723)
.....+++|||+||++.+++ +|++||+.+..... +.+..+..+++.++++.+++. +..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999998887 89999998765443 445455556788899999974 4578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
|++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-D-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++.+
T Consensus 241 ~~~~ 244 (260)
T PRK10744 241 TIFT 244 (260)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=389.97 Aligned_cols=220 Identities=20% Similarity=0.330 Sum_probs=195.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..|+++||+|.|++ +.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 6 ~~l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 47999999999953 469999999999999999999999999999999999999999999999998753 3445567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHH-hcC---CCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcC
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAV-LKG---VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~g---~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~ 602 (1723)
.+|||||++.+++.+|++||+.+... ..+ ...+..+++++++++.+||.+..++.+.+||||||||++|||||+.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 89999999999989999999986421 111 11233456788999999999888999999999999999999999999
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|+++||||||+|||+.+++.++++|+++. .|+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999985 3899999999999999999999999999999999987654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=404.32 Aligned_cols=214 Identities=22% Similarity=0.420 Sum_probs=191.3
Q ss_pred eEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc-----HHHHhcce
Q 000284 454 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD-----MDEIRKGL 528 (1723)
Q Consensus 454 ~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~-----~~~~r~~i 528 (1723)
||+|.|++ +. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++.+
T Consensus 4 ~l~~~~~~----~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i 77 (354)
T TIGR02142 4 RFSKRLGD----FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77 (354)
T ss_pred EEEEEECC----EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCe
Confidence 79999953 23 4 99999999999999999999999999999999999999999999987531 23457789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||+||++.+|+.+||+||+.+..... ...+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllL 155 (354)
T TIGR02142 78 GYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLM 155 (354)
T ss_pred EEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998865432 2334456789999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
||||+|||+.+++.+++.|++++ + |+|||++||+++++..+||||++|++|++++.|++.++.....
T Consensus 156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 156 DEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999985 3 8999999999999999999999999999999999988865443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=385.72 Aligned_cols=221 Identities=21% Similarity=0.400 Sum_probs=193.4
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~--p---~~G~i~i~G~~i~~ 1426 (1723)
+++|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 468999999999963 459999999999999999999999999999999999987 3 69999999998853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHH
Q 000284 1427 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1427 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kq 1498 (1723)
.....++.+||+||++.+++. |++||+.+.....+. .+.+..+++.++++.+++.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567789999999988875 999999876555553 23344556778899998853 468899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
|++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-K-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999999
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++.+
T Consensus 240 ~~~~ 243 (259)
T PRK14274 240 KMFS 243 (259)
T ss_pred HHhh
Confidence 8764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=379.30 Aligned_cols=208 Identities=33% Similarity=0.569 Sum_probs=188.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... .++.+|
T Consensus 1 l~l~~v~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHKIG 73 (223)
T ss_pred CEEEeEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---ccccEE
Confidence 468999999953 4699999999999999999999999999999999999999999999999876421 135799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.++....+.+ ++++.++++.+|+.+..++.+.+||||||||++||||++.+|+++|||
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD 149 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD 149 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999999999999999998876655543 346788999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHH
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 668 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~ 668 (1723)
|||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++.+.|++.
T Consensus 150 EP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 150 EPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999986 5899999999999999999999999999999988763
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=376.34 Aligned_cols=205 Identities=30% Similarity=0.431 Sum_probs=180.7
Q ss_pred eEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-----ChHHhcc
Q 000284 1359 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-----DPKAARR 1433 (1723)
Q Consensus 1359 ~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-----~~~~~~~ 1433 (1723)
||+|+|++ +.+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 5 ~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 5 DIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred eeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 99999964 333 99999999 9999999999999999999999999999999999998753 1223567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
.+||+||++.+++.+|++||+.+..... .....++++.++++.+++.+..++++.+||||||||++||+||+.+|++|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999998899999998764322 22234456788999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
||||||+|||+.+++.+++.|++++++.| +|||++||++++++.+|||+++|++|++++.|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLN-IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999865434 58999999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=387.26 Aligned_cols=220 Identities=26% Similarity=0.429 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 20 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 20 HILEVKDLSIYYGE----KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred ceEEEEEEEEEeCC----ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 57999999999953 469999999999999999999999999999999999864 799999999998853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....++++||+||++.+++. |++||+.+.....+.. ....++.+.++++.+++. +..++++++||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 233567889999999998885 9999998765443332 233456678889999884 4568899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|+++..|++.++.+
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999778899999999999999999999999999999999877643
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=383.97 Aligned_cols=219 Identities=28% Similarity=0.473 Sum_probs=195.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~---~ 520 (1723)
.|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. +
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~ 78 (250)
T PRK14262 3 IIEIENFSAYYGE----KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78 (250)
T ss_pred eEEEEeeEEEeCC----ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhh
Confidence 6899999999953 4699999999999999999999999999999999999984 89999999998753 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~l 595 (1723)
....++.+||+||++.+++ +|++||+.+.....+.. .+..+++++++++.+|+.+ ..++.+.+||||||||++|
T Consensus 79 ~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 79 VTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 2345788999999999887 89999998876554433 3345667888999999853 4688999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|+||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|+++..|++.++.+
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999887754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=388.19 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=193.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEccccCCc-----
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT---TGDALVFGKNITA----- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~---~G~i~i~g~~i~~----- 519 (1723)
+.++++||++.|++ +.+++|+||++.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 3 TIIRVEKLAKTFNQ----HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred cEEEEeeEEEEeCC----eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 46899999999953 46999999999999999999999999999999999999987 4999999998743
Q ss_pred -cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHH
Q 000284 520 -DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL--------KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMK 590 (1723)
Q Consensus 520 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~--------~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqk 590 (1723)
+....++.+||+||++.+++.+||.||+.+.... .+...++.+++++++++.+|+.+..++.+.+||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence 2345577899999999999999999999865321 1111234456889999999999888999999999999
Q ss_pred HHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHH
Q 000284 591 RKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 668 (1723)
Q Consensus 591 qrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~ 668 (1723)
||++|||||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++|++|++.+.|++.
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 3899999999999999999999999999999999876
Q ss_pred HH
Q 000284 669 FL 670 (1723)
Q Consensus 669 ~L 670 (1723)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 54
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=383.92 Aligned_cols=220 Identities=30% Similarity=0.460 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CC---CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI--PP---TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~--~p---~~G~i~i~g~~i~~--- 519 (1723)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+. +| ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 4 PILQVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred ceEEEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 46899999999953 46999999999999999999999999999999999995 46 59999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+.+||+||++.+++ +||+||+.+.....+.. .+..++++.++++.+++. +..++.+.+||||||||++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 23456778999999999887 79999998876555543 334567788899999874 3568899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|++++.|++.++.+
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998777999999999999999999999999999999999877643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=381.49 Aligned_cols=216 Identities=23% Similarity=0.394 Sum_probs=190.0
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++||+|.|+. + ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.+|
T Consensus 2 l~~~~l~~~~~~----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRRPVS 74 (232)
T ss_pred eEEEEEEEEECC----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhccEE
Confidence 789999999953 1 23899999999999999999999999999999999999999999999875321 1356799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|+.||+.+.........+..++++.++++.+|+.+..++++.+||||||||++||+|++.+|+++|||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999986532111112334667899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||+|||+.+++.++++|+++. + |+|||++||+++++..+||||++|++|++.+.|++.++.+
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999984 3 8999999999999999999999999999999999877653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=384.64 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=193.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~-- 1426 (1723)
+++++|++|+|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 5899999999963 4599999999999999999999999999999999999974 79999999998742
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
.....++.+||++|++.+++.+|++||+.+....++. +....++.+.++++.+++. +..++++.+|||||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345677899999999999999999999876555443 3344556778889999884 467899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE------CCEEEEe
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV------GGQLRCI 1574 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~------~G~l~~~ 1574 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|+ +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-D-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999999999999999984 3 3 589999999999999999999997 7999999
Q ss_pred cChhHHHh
Q 000284 1575 GSPQHLKT 1582 (1723)
Q Consensus 1575 g~~~~l~~ 1582 (1723)
|+++++..
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 99988754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=382.63 Aligned_cols=221 Identities=24% Similarity=0.396 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~--p---~~G~i~i~G~~i~~- 1426 (1723)
..|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 36899999999963 459999999999999999999999999999999999986 4 69999999999853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||+||++.+++.+|++||+.+.....+. ...+.++++.++++.+++.. ..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335677899999999999989999999875544442 33344566788899999853 4678899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-E-K-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-h-C-CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14256 234 IFT 236 (252)
T ss_pred HHh
Confidence 754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=376.35 Aligned_cols=210 Identities=26% Similarity=0.449 Sum_probs=186.1
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++||+|.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++.+|
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-ChhccceE
Confidence 368999999941 46799999999999999999999999999999999999999999999987532 23567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|+.||+.+............+++++++++.+|+.+..++.+.+||||||||++|||||+.+|+++|||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999986543211112234567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecC
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs 666 (1723)
|||+|||+.+++.++++|++++ + ++|||++||+++++..+|||+++|++|++.+.|.
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999985 3 8999999999999999999999999999998774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=376.27 Aligned_cols=203 Identities=31% Similarity=0.467 Sum_probs=181.7
Q ss_pred eEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-----cHHHHhcce
Q 000284 454 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-----DMDEIRKGL 528 (1723)
Q Consensus 454 ~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-----~~~~~r~~i 528 (1723)
||+|+|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 5 ~l~~~~~~----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 5 DIEKRLPD----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred eeeEecCC----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 89999964 234 99999999 9999999999999999999999999999999999988742 233457789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
||+||++.+++.+|+.||+.+..... .....++++.++++.+|+.+..++++.+||||||||++||+||+.+|+++||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998765322 2334456789999999999888999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
||||+|||+.+++.++++|++++ + |+|||++||++++++.+|||+++|++|++++.|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999985 3 899999999999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=383.59 Aligned_cols=223 Identities=22% Similarity=0.365 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCee-----CCCC
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD-----IRSD 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~-----i~~~ 1427 (1723)
.+|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 47999999999953 459999999999999999999999999999999999999999999999998 6542
Q ss_pred -hHH----hccceEEEecCC--CCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHH
Q 000284 1428 -PKA----ARRLIGYCPQFD--ALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1428 -~~~----~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kq 1498 (1723)
... .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++.+.++++.+++. +..++++.+|||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 222 356799999996 466778999998754322221 2234456778899999997 4788999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
|++|||||+.+|+||||||||+|||+.+++.+++.|++++++.| .|||++||+++++..+|||+++|++|+++..|+++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-LAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864434 68999999999999999999999999999999998
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++.+
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 8754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=377.49 Aligned_cols=210 Identities=35% Similarity=0.540 Sum_probs=188.1
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++|++|.|++ +.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... .++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---cccc
Confidence 468999999953 4699999999999999999999999999999999999999999999999987532 1357
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.++....+.+ ++.+.++++.+++.+..++++.+||||||||++||||++.+|++|+
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999888899999998876655533 2456788999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
|||||+|||+.+++.+++.|++++ ++| .|||++||+++++..+|||+++|++|++++.|++.+
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~-~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFP-EQG-ITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHH-HCC-CEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999985 344 589999999999999999999999999999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=382.23 Aligned_cols=220 Identities=22% Similarity=0.396 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~- 1426 (1723)
++|+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 57899999999952 4599999999999999999999999999999999999875 89999999999853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||+||++.+++ +|++||+.+.....+.. ..+.++++.++++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred cccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 22345778999999998887 89999998766555542 334455677889999874 45788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++||+||+.+|+||||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~-~-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-K-E-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-C-CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14270 233 IFL 235 (251)
T ss_pred Hhc
Confidence 753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=383.41 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=194.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~---~ 520 (1723)
.|+++|+++.|+. +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. +
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 6899999999953 469999999999999999999999999999999999997 489999999998743 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....++.+||++|++.+++ .||+||+.+.....+.. .+..+++++++++.+++. +..++.+.+||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 3456788999999998886 79999998765554443 334556788999999984 45688899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999877643
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=381.38 Aligned_cols=219 Identities=25% Similarity=0.432 Sum_probs=192.5
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCC-ChH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRS-DPK 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~---p~~G~i~i~G~~i~~-~~~ 1429 (1723)
+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5789999999963 469999999999999999999999999999999999974 799999999999865 334
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC--hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHHHHH
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKLSVA 1503 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~--~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl~iA 1503 (1723)
..++.|||+||++.+++ .|++||+.+....++.. ....++++.++++.+++. +..++++.+||||||||++||
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56778999999998887 69999998865554432 233445677899999995 346888999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1504 ~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
|||+.+|++|||||||+|||+.+++.+.+.|+++. + + +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-N-LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-C-CEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999984 3 4 589999999999999999999999999999999988754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=378.56 Aligned_cols=189 Identities=24% Similarity=0.359 Sum_probs=152.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
.++-.+++|.|++ . .|+==.=++..||++|++||||-||||+.++|+|.++|++|. ..+ -
T Consensus 342 lv~y~~~~k~~g~------F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~---------~ 401 (591)
T COG1245 342 LVEYPDLKKTYGD------F-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED---------L 401 (591)
T ss_pred eeecchheeecCc------e-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------c
Confidence 3455567777752 1 233223356789999999999999999999999999999997 222 2
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+|+|=||.-.-..+.||++.|.-..+-. ..... .-.++++-++|++..++++.+||||+.|||+||.||..++++.
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY 477 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY 477 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE
Confidence 4899999855446689999775433221 22221 2346788899999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV 1567 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~ 1567 (1723)
+||||++.||.+.|-.+-+.|+++.... +.|.+++-||+-.++-++||+++..
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~-~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENN-EKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhc-CceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999999999999997555 4689999999999999999999885
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=383.40 Aligned_cols=221 Identities=28% Similarity=0.408 Sum_probs=196.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcc------ccCCc-c
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG------KNITA-D 520 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g------~~i~~-~ 520 (1723)
+.+.++|++|+|++ +.+++|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++.. .
T Consensus 9 ~~i~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 9 DVFNISRLYLYIND----KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hheeeeeEEEecCC----ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 57999999999953 4699999999999999999999999999999999999999997777665 44432 3
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....|+.+||+||++.+++.+|++||+.+....++. +.++.++++.++++.+++. +..++.+..||||||||++|
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 445678899999999999999999999987655443 3445667889999999996 35688999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|+++||||||+|||+.++++++++|.++++++|||++||+++++..+|||+++|++|++++.|++.++.+
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999877653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=386.08 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=191.1
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~ 1426 (1723)
..+|+++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 357999999999953 469999999999999999999999999999999999987 699999999998742
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++++||+||++.+++ .|++||+.+.....+... ..++.+.++++.+++. +..++++.+||||||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred ccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 34456778999999998887 599999988765555432 2345667788888763 45788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-----------
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG----------- 1568 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~----------- 1568 (1723)
|+|||||+.+|++|||||||+|||+.+++.++++|++++ + + +|||++||++++++.+|||+++|++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~-~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-N-FTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 999999999999999999999999999999999999984 3 4 5899999999999999999999996
Q ss_pred CEEEEecChhHHHh
Q 000284 1569 GQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1569 G~l~~~g~~~~l~~ 1582 (1723)
|++++.|+++++.+
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=376.95 Aligned_cols=230 Identities=24% Similarity=0.404 Sum_probs=201.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CceEEEEcCeeCCCC-
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-P----TDGTAFIFGKDIRSD- 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-p----~~G~i~i~G~~i~~~- 1427 (1723)
+|+++||+..|.... +...||+||||+|++||++||+|.+|||||||.+.|.|+++ | .+|+|.++|+++.+-
T Consensus 1 lL~v~nL~v~f~~~~--g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 1 LLEVKNLSVSFPTDA--GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred CceEeeeEEEEecCC--ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 378999999997532 34679999999999999999999999999999999999998 4 579999999998653
Q ss_pred hH---Hh-ccceEEEecCC--CCCCCCCHHHHHHHHHHHcC-C-ChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhH
Q 000284 1428 PK---AA-RRLIGYCPQFD--ALLEYLTVQEHLELYARIKG-V-AEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGN 1496 (1723)
Q Consensus 1428 ~~---~~-~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g-~-~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~ 1496 (1723)
.+ +. .+.|+|+||++ +|.|-+|+.+.+.-..+.++ . .+++..+++.++|+.+|+.+ ..+.++.+|||||
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGM 158 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcH
Confidence 22 22 35799999995 78899999998876665443 3 45667788999999999974 5789999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1497 kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
||||.||.||+.+|++||.||||++||...+.++.++|++++++.| +|+|++|||+..+..+||||+||..|++++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~-~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 9999999999999999999999999999999999999999986555 799999999999999999999999999999999
Q ss_pred hhHHHhhcCC
Q 000284 1577 PQHLKTRFGN 1586 (1723)
Q Consensus 1577 ~~~l~~~~~~ 1586 (1723)
.+++...-..
T Consensus 238 ~~~i~~~P~H 247 (316)
T COG0444 238 VEEIFKNPKH 247 (316)
T ss_pred HHHHhcCCCC
Confidence 9998765433
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=381.74 Aligned_cols=219 Identities=21% Similarity=0.309 Sum_probs=188.7
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEEcCeeCCCC-hHH-
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--YPTDGTAFIFGKDIRSD-PKA- 1430 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~--~p~~G~i~i~G~~i~~~-~~~- 1430 (1723)
|+++||+|+|++ +.+++|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999953 46999999999999999999999999999999999995 79999999999988652 222
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcC-------CChhhHHHHHHHHHHHcCCc-cccCCCCC-CCChhHHHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKG-------VAEYRMDDVVMEKLVEFDLL-KHAKKPSF-TLSGGNKRKLS 1501 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-------~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrl~ 1501 (1723)
.+..++|+||++.+++.+|++|++.+...... ....+..+++.++++.+++. +..++++. +|||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 34559999999999999999999987543221 12223345678899999997 46788887 59999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHH-cCEEEEEECCEEEEecChhHH
Q 000284 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL-CTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1502 iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l-~drv~im~~G~l~~~g~~~~l 1580 (1723)
||+||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++||++++++.+ |||+++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999999999999999999999999999999999853 44 5899999999999998 899999999999999998865
Q ss_pred H
Q 000284 1581 K 1581 (1723)
Q Consensus 1581 ~ 1581 (1723)
.
T Consensus 233 ~ 233 (243)
T TIGR01978 233 K 233 (243)
T ss_pred c
Confidence 5
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=384.13 Aligned_cols=222 Identities=24% Similarity=0.410 Sum_probs=191.5
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1425 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~ 1425 (1723)
.+++++++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 3468999999999953 459999999999999999999999999999999999864 79999999999985
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHH
Q 000284 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1426 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~k 1497 (1723)
. .....++++||+||++.+++. |++||+.+.....+... ...++.+.+.++.+++. +..++++++||||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 3 223457789999999988874 99999987644433322 22345567788888874 456899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
||++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|+++..|++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-E-YSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-C-CEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999984 3 3 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++.+
T Consensus 248 ~~~~~ 252 (268)
T PRK14248 248 EQIFT 252 (268)
T ss_pred HHHHh
Confidence 88754
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=346.92 Aligned_cols=215 Identities=25% Similarity=0.454 Sum_probs=198.7
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.+.+.+++-+|+++. +.+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|+|.++|..|+.+-. .=
T Consensus 3 ~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----er 76 (259)
T COG4525 3 MLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----ER 76 (259)
T ss_pred eeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----cc
Confidence 467788999997653 569999999999999999999999999999999999999999999999998864321 24
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
|+|+|++.|+|.+|+.||++|+.++.|+++.+..+.+.+++..+||++..++.+.+||||||||+.|||||+.+|++|+|
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlL 156 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLL 156 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHH-h-CCcEEEEEcCCHHHHHhhcCEEEEEe--CCEEEEecCHHH
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMA--NGSLKCCGSSLF 669 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~-~-~~~tiil~TH~~~e~~~l~dri~il~--~G~l~~~Gs~~~ 669 (1723)
|||.++||.-.|+++.++|.++ + .|+.++++||+++||.-+++|+++|+ .|+++..=++.+
T Consensus 157 DEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 157 DEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCH
Confidence 9999999999999999999886 3 48999999999999999999999999 689987766654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=384.36 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=195.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..|+++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 19 ~~l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGK----KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECC----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 47999999999953 469999999999999999999999999999999999996 589999999998842
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+.+||+||++.+++ .||+||+.+.....+. .++..++++.++++.++|. +..++++.+||||||||++
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 24456788999999998887 5999999886554443 3445667788999999985 3568899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|++++.|++.++.
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987899999999999999999999999999999999987764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=381.45 Aligned_cols=220 Identities=26% Similarity=0.397 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~--- 519 (1723)
+.++++||++.|++ +.+++|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 3 PKIKIRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred ceEEEEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 36899999999953 45999999999999999999999999999999999999997 6999999998753
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+.+||+||++.+++. |++||+.+....++.. .++.+++++++++.+++. +..++.+.+||||||||++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 234567889999999999875 9999999876555543 234456778888888874 4578899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|++|++.+.|++.++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998778999999999999999999999999999999999877754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=380.07 Aligned_cols=220 Identities=24% Similarity=0.392 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CceEEEEcCeeCCCC
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE---EYP--TDGTAFIFGKDIRSD 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~---~~p--~~G~i~i~G~~i~~~ 1427 (1723)
++|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+ .+| ++|+|.++|+++...
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 47899999999953 4599999999999999999999999999999999997 455 589999999988542
Q ss_pred ---hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHH
Q 000284 1428 ---PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1428 ---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqr 1499 (1723)
....++.+||+||++.+++ .|+.||+.+....++... ...++.+.++++.+++.+ ..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 2456778999999988887 699999987655554432 234566788899999853 4688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+|||+++|++|+++..|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-D-YTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999984 3 4 589999999999999999999999999999999998
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 864
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=387.43 Aligned_cols=220 Identities=25% Similarity=0.393 Sum_probs=194.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
+.++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 38 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 38 PHVVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred eEEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 57999999999953 359999999999999999999999999999999999864 599999999998752
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
.....|+.+||+||++.+++. ||.||+.+.....+.. ....++++.++++.+|+. +..++.+.+||||||||++
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 223467889999999988875 9999999876555543 334556788899999873 4668899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999999777999999999999999999999999999999999877754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=382.19 Aligned_cols=220 Identities=26% Similarity=0.430 Sum_probs=194.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~--- 519 (1723)
+.|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 5 ~~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 5 IILSTKNLNLWYGE----KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred ceEEEeeeEEEECC----eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 47999999999953 469999999999999999999999999999999999976 3 58999999998854
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....++.+||+||++.+++. ||+||+.+....++. +....++++.++++.+++. +..++.+.+||||||||++
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 334567889999999999885 999999987665553 2334566788899999874 3468899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|++.++..
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999999877999999999999999999999999999999999877653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=380.62 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--YP---TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~--~p---~~G~i~i~G~~i~~- 1426 (1723)
++++++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+. +| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 47999999999963 45999999999999999999999999999999999985 46 59999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||+||++.+++ +|++||+.+.....+... ...++.+.++++.+++. +..++++.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999998887 899999987655555432 23456677888998874 45789999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.++++|+++. + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-D-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-C-CeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 234 ~~~ 236 (252)
T PRK14239 234 MFM 236 (252)
T ss_pred HHh
Confidence 754
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=386.15 Aligned_cols=219 Identities=25% Similarity=0.410 Sum_probs=194.4
Q ss_pred cceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc--
Q 000284 447 GRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA-- 519 (1723)
Q Consensus 447 ~~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~-- 519 (1723)
.+.|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 357999999999953 469999999999999999999999999999999999997 699999999998742
Q ss_pred -cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 -DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....++.+||+||++.+++. ||.||+.+.....+.+. ..+++++++++.+|+. +..++++.+||||||||++
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 234567889999999988885 99999988766655543 4567789999999985 4568899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE-EEeCCEEEEecCHHHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIA-IMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~-il~~G~l~~~Gs~~~Lk 671 (1723)
|||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||++ +|++|+++..|++.++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999767899999999999999999976 57999999999887664
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=381.16 Aligned_cols=220 Identities=26% Similarity=0.396 Sum_probs=194.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~---~ 520 (1723)
.++++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. +
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 4 LLSAQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred EEEEeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence 6899999999953 46999999999999999999999999999999999999875 8999999998752 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....|+.+||+||++.+++.+|+.||+.+.....+. ..++..+.+.++++.+++. +..++++++||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14272 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCI 159 (252)
T ss_pred HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHH
Confidence 345678899999999999999999999876544443 2344556677788888763 45688899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+||||++|++|+++..|++.++..
T Consensus 160 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999887754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=380.78 Aligned_cols=218 Identities=28% Similarity=0.442 Sum_probs=193.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc--cH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--DM 521 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--~~ 521 (1723)
.++++|++|.|+. +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. +.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 3 KFNIENLDLFYGE----NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred eEEEeccEEEECC----eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 5889999999953 4699999999999999999999999999999999999986 59999999998742 34
Q ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHHH
Q 000284 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSLG 596 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~lA 596 (1723)
...|+.+||+||++.+++ .||.||+.+.....+.. .+..++++.++++.+++. +..++++.+||||||||++||
T Consensus 79 ~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 567788999999999887 79999998765444433 334556788889999875 356888999999999999999
Q ss_pred HHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 597 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|++..+.
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999977799999999999999999999999999999999887664
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=382.12 Aligned_cols=219 Identities=27% Similarity=0.443 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
..++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 6 ~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 6 PAIKVKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred ceEEEEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 36999999999953 4699999999999999999999999999999999999985 58999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
.....++++||+||++.+|+ +|++||+.+.....+ .++.+.++++.++++.+++. +..++.+.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 23456788999999999987 899999987655443 24445566788899999884 4678899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe-----CCEEEEecCHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA-----NGSLKCCGSSLF 669 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~-----~G~l~~~Gs~~~ 669 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|+ +|++++.|++.+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 240 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence 999999999999999999999999999999999999878999999999999999999999998 599999999887
Q ss_pred HH
Q 000284 670 LK 671 (1723)
Q Consensus 670 Lk 671 (1723)
+.
T Consensus 241 ~~ 242 (259)
T PRK14260 241 IF 242 (259)
T ss_pred Hh
Confidence 64
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=384.26 Aligned_cols=221 Identities=22% Similarity=0.325 Sum_probs=191.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------ceEEEEcCeeCC
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIFGKDIR 1425 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~--------~G~i~i~G~~i~ 1425 (1723)
+|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999953 46999999999999999999999999999999999999998 999999999886
Q ss_pred C-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHH
Q 000284 1426 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1426 ~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl 1500 (1723)
. .....++.++|+||++.++..+|++||+.+..... +....+..+.+.++++.+++.+..++++.+|||||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 4 34455667999999987656699999997642111 111123345678899999999889999999999999999
Q ss_pred HHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1501 SVAIAMI---------GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1501 ~iA~al~---------~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
+||+||+ .+|++|||||||+|||+.+++.+++.|+++.++.| +|||++||+++++..+|||+++|++|++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 9999999 59999999999999999999999999999864334 5899999999999999999999999999
Q ss_pred EEecChhHHH
Q 000284 1572 RCIGSPQHLK 1581 (1723)
Q Consensus 1572 ~~~g~~~~l~ 1581 (1723)
+..|+++++.
T Consensus 234 ~~~g~~~~~~ 243 (272)
T PRK13547 234 VAHGAPADVL 243 (272)
T ss_pred EEecCHHHHc
Confidence 9999987764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=410.56 Aligned_cols=221 Identities=27% Similarity=0.469 Sum_probs=195.4
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..|+++||++.|+.++ +..+++|+||+|++||++||+||||+||||+.++|-.+|.|++|+|.+||+||+. +...+|+
T Consensus 464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 4699999999999874 5789999999999999999999999999999999999999999999999999975 7889999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHcCCCcccccc----cCCCChhHHHHHHHHH
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA-----EMVDEVGLADKVNIV----VRALSGGMKRKLSLGI 597 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~-----~~l~~~~l~~~~~~~----~~~LSgGqkqrl~lA~ 597 (1723)
+||+|.|+|+||.. ||+|||.++.. ..+.+++++.++ +.+. ++++..|+. ..+||||||||++|||
T Consensus 543 ~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred Heeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccchHHHHHHHHH
Confidence 99999999999986 99999998654 344444433221 2222 455555544 4589999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
||+.||+||||||.||+||.++...+.+.|.+..++||||++.|++..++. ||+|+++++|++++.|+.++|.++.+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCcc
Confidence 999999999999999999999999999999999999999999999999986 99999999999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=379.07 Aligned_cols=219 Identities=23% Similarity=0.456 Sum_probs=191.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~-- 1426 (1723)
.|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5889999999963 4599999999999999999999999999999999999763 79999999999863
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
.....++.+||+||++.+++ +|++||+.+.....+.. ....++.+.++++.+++. +..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23346778999999988887 89999998766555542 234456778888888874 456889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-D-YTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 5899999999999999999999999999999998887
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 53
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=383.44 Aligned_cols=219 Identities=28% Similarity=0.430 Sum_probs=195.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 24 ~~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 24 TALEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred cEEEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 47999999999953 369999999999999999999999999999999999988 489999999998853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~ 594 (1723)
+....|+.+||+||++.+++. |++||+.+.....+.. .+..+++++++++.+++.+ ..++.+.+||||||||++
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 234567899999999999986 9999998876555542 3344567888999999863 568889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999977899999999999999999999999999999999987664
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=381.64 Aligned_cols=221 Identities=21% Similarity=0.388 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcccc-----CCc-cH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN-----ITA-DM 521 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~-----i~~-~~ 521 (1723)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.. ..
T Consensus 5 ~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 5 PLLSVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE 80 (258)
T ss_pred ceEEEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCH
Confidence 46999999999953 369999999999999999999999999999999999999999999999988 643 12
Q ss_pred HH----HhcceEEEccCCC--CCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHHH
Q 000284 522 DE----IRKGLGVCPQYDI--LFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 522 ~~----~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSgGqkqrl 593 (1723)
.. .++.+||+||++. +++.+|+.||+.+.....+ ....+.++++.++++.+++.+ ..++.+.+||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 21 3567999999973 6778899999976433222 223345677889999999974 67899999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + |+|||++||+++++..+||||++|++|+++..|++.++.
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 3 899999999999999999999999999999999988775
Q ss_pred h
Q 000284 672 H 672 (1723)
Q Consensus 672 ~ 672 (1723)
.
T Consensus 241 ~ 241 (258)
T PRK11701 241 D 241 (258)
T ss_pred c
Confidence 3
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=378.17 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=192.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCCC-
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRSD- 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~~- 1427 (1723)
+|+++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999952 4699999999999999999999999999999999999884 899999999987532
Q ss_pred --hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000284 1428 --PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1428 --~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrl 1500 (1723)
....++.+||+||++.+++ +|++||+.+.....+.. ....++.+.++++.+++.+ ..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 2345678999999998887 89999998765544433 2234556778888888853 47899999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+||+||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-N-YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-C-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999985 3 4 5899999999999999999999999999999999888
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 65
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=375.60 Aligned_cols=215 Identities=29% Similarity=0.479 Sum_probs=189.7
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEccccCCccHHHHh
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITADMDEIR 525 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~~~~~~r 525 (1723)
.++++|+++.|++.++.+.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQ 80 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhc
Confidence 46789999999764324679999999999999999999999999999999999999 999999999998752 3567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHH-HHHHcCCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGV---KEELLESVVAE-MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~---~~~~~~~~v~~-~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
+.+||+||++.+++.+||+||+.+.....+. ......+++++ .++.+++.+..++.+++||||||||++|||||+.
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999987654331 22223345556 8999999988899999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCH-HHHHhhcCEEEEEeCCEEEEec
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSM-DEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~-~e~~~l~dri~il~~G~l~~~G 665 (1723)
+|+++||||||+|||+.+++.++++|++++ +|+|+|++||++ +++..+|||+++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999985 589999999999 6999999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=379.46 Aligned_cols=218 Identities=23% Similarity=0.349 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEEcCeeCCCChH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSDPK 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p----~~G~i~i~G~~i~~~~~ 1429 (1723)
+|+++|++|+|+ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|+++|+++.. ..
T Consensus 4 ~l~~~~l~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQAA-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEec-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 689999999992 3589999999999999999999999999999999999999 99999999998853 22
Q ss_pred HhccceEEEecCCC--CCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhHHHHHHHHH
Q 000284 1430 AARRLIGYCPQFDA--LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrl~iA~ 1504 (1723)
..++.+||+||++. +.+.+|+.+++.......+... .++.+.++++.+++.+ ..++++.+|||||||||+|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 4456799999876555444432 2356788999999976 468999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1505 al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||+.+|++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRA-LGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999864434 689999999999999999999999999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=379.56 Aligned_cols=218 Identities=23% Similarity=0.428 Sum_probs=192.1
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---cH
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA---DM 521 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~---~~ 521 (1723)
-+++||++.|++ +.+++|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. ..
T Consensus 6 ~~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGS----KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 468999999953 469999999999999999999999999999999999986 579999999988742 22
Q ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000284 522 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~l 595 (1723)
..+|+.+||+||++.+++. |+.||+.+....++. .....++++.++++.+|+.+ ..++.+.+||||||||++|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred HHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 3467889999999998886 999999876544443 23445667889999999965 4578899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||+++++..+||||++|++|+++..|++.++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999877643
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=383.04 Aligned_cols=220 Identities=27% Similarity=0.453 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
+.++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 23 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 47999999999953 359999999999999999999999999999999999997 699999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCC----CcccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGL----ADKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l----~~~~~~~~~~LSgGqkqrl~ 594 (1723)
.....++.+||+||++.+++. |++||+.+.....+.. ....++.+.++++.+++ .+..++++.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 344567889999999998874 9999998866544433 23345567788887754 45568899999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++++.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999999878999999999999999999999999999999999877643
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=384.37 Aligned_cols=222 Identities=24% Similarity=0.364 Sum_probs=192.6
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1425 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~ 1425 (1723)
.+++|+++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 36 ~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 4568999999999953 459999999999999999999999999999999999864 49999999999875
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHH
Q 000284 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1426 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~k 1497 (1723)
. .....++++||+||++.+++. |+.||+.+.....+.. ....++.+.++++.+++. +..++++.+||||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 3 223457789999999988874 9999998865554543 223445677888888873 567899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
|||+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|+++..|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~-~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G-S-YTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999985 3 3 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++.+
T Consensus 266 ~~~~~ 270 (286)
T PRK14275 266 AQLFT 270 (286)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=382.70 Aligned_cols=221 Identities=25% Similarity=0.453 Sum_probs=192.8
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1425 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~ 1425 (1723)
++++|+++||+|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 36 ~~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 36 GETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 3568999999999953 459999999999999999999999999999999999987 69999999999875
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000284 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1426 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kq 1498 (1723)
. .....++++||+||++.+++. |+.||+.+.....+.+. ...+++.++++.+++. +..++++.+|||||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 3 234567789999999888875 99999987666555443 3456678899999884 4578999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEE-EEECCEEEEecCh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIG-IMVGGQLRCIGSP 1577 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~-im~~G~l~~~g~~ 1577 (1723)
||+|||||+.+|+||||||||+|||+.+++.++++|++++ + + .|||++||+++++..+|||++ +|++|+++..|++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~-~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-E-E-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999985 3 3 489999999999999999976 5699999999998
Q ss_pred hHHHh
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++..
T Consensus 265 ~~~~~ 269 (285)
T PRK14254 265 DKIFE 269 (285)
T ss_pred HHHHh
Confidence 88753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=377.95 Aligned_cols=220 Identities=23% Similarity=0.391 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~- 1426 (1723)
++|+++|++++|+. +.+++++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999953 469999999999999999999999999999999999997 489999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||++|++.+++ .|++||+.+.....+... ...++.+.++++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 22345778999999998886 799999987655444432 23445677888999984 45688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+||||++|++|++++.|++++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-Q-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-C-CeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 3 4 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 233 ~~~ 235 (251)
T PRK14251 233 MFI 235 (251)
T ss_pred HHh
Confidence 753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=379.00 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=193.2
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~-----~G~i~i~G~~i~~-- 1426 (1723)
+|+++|++|+|++ ..+++|+||++++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 6899999999953 35999999999999999999999999999999999999986 8999999998742
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000284 1427 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrl 1500 (1723)
.....++.++|+||++.+++ +|++||+.+.....+. +..+..+.+.++++.+++.+ ..++++.+||||||||+
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred cchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 22355778999999988887 8999999876554443 33334456778899998743 46889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC-----CEEEEec
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG-----GQLRCIG 1575 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~-----G~l~~~g 1575 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|+++++++| +|||++||+++++..+||||++|++ |+++..|
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 999999999999999999999999999999999999864444 6899999999999999999999999 9999999
Q ss_pred ChhHHHh
Q 000284 1576 SPQHLKT 1582 (1723)
Q Consensus 1576 ~~~~l~~ 1582 (1723)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14258 239 LTKKIFN 245 (261)
T ss_pred CHHHHHh
Confidence 9998854
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=346.04 Aligned_cols=222 Identities=27% Similarity=0.424 Sum_probs=202.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcc-ccCCc--cHHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG-KNITA--DMDEI 524 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g-~~i~~--~~~~~ 524 (1723)
..+.++||+.+|+ +..||+++||++.+||.-+|+|||||||||+|.+|+|..+|+.|+++++| .|+++ ..+-.
T Consensus 4 ~iL~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHH
Confidence 4689999999995 45699999999999999999999999999999999999999999999999 78864 34456
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHH
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVL--------KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLG 596 (1723)
Q Consensus 525 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~--------~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA 596 (1723)
|..||--+|.|..|+.+||+|||.+.... ......+-+++++++|+..||.+.+++.+..||-||||+|.|+
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence 78899999999999999999999885432 2222344567899999999999999999999999999999999
Q ss_pred HHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 597 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
+-++++|++|+||||++||....+++.-++|+.++++++|+++.|||+++..+||||.+|+.|++.|.|+.+++.+.
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=379.50 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=193.3
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~ 1426 (1723)
..+|+++|++|+|+ ++.+++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYG------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEEC------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 35799999999995 2569999999999999999999999999999999999986 589999999999853
Q ss_pred ---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000284 1427 ---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1427 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kq 1498 (1723)
.....++.|||+||++.+++ .|++||+.+.....+. .+...++++.++++.+++. +..++++.+|||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQ 170 (267)
T ss_pred ccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHH
Confidence 23345778999999988887 6999999876544443 2334456678889999884 4578999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
|++|||||+.+|++|||||||+|||+.+++.++++|+++. + + .|||++||+++++..+|||+++|++|++++.|+++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-N-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 3 4 58999999999999999999999999999999998
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14237 248 NIFT 251 (267)
T ss_pred HHhc
Confidence 8754
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=380.23 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=186.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
|+++|+++.|+.. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 1 i~~~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPD--GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCC--CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcE
Confidence 4689999999642 2469999999999999999999999999999999999999999999999998753 344567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
||+||++.+++ .||.||+.+... +.......+ .+.++++.+ ++....++++.+|||||||||+|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 99999998875 699999987431 222222211 234455555 56666788999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhh
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~ 674 (1723)
+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++ .|||+++|++|+++..|++.++.+..
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 9999999999999999999999999999877999999999999996 59999999999999999988776553
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=372.00 Aligned_cols=211 Identities=29% Similarity=0.462 Sum_probs=188.9
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-c---HHHHh
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEIR 525 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~---~~~~r 525 (1723)
++++|+++.|+.+.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. . ....+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999653223579999999999999999999999999999999999999999999999998743 1 22467
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCc
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLK-GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~ 604 (1723)
+.+||+||++.+|+.+|+.||+.+..... +.+.++.++++.++++.+||.+..++.+.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999876554 34556667789999999999988899999999999999999999999999
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 605 vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
++||||||+|||+.+++.++++|++++ .++|||++||+++.+ .+||+|++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999985 389999999999865 68999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=381.16 Aligned_cols=220 Identities=25% Similarity=0.374 Sum_probs=195.2
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc--c
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--D 520 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--~ 520 (1723)
+.++++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 20 ~~l~i~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 20 PAMAAVNLTLGFAG----KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred cEEEEeeEEEEECC----EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 47899999999953 4699999999999999999999999999999999999986 79999999998753 2
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~l 595 (1723)
....++.+||+||++.+|+ .|++||+.+.....+ .+..+.++++.++++.+++.. ..++.+.+||||||||++|
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 3456788999999999988 799999987654332 344555667788999999974 3578899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
||||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999998767899999999999999999999999999999999887754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=374.66 Aligned_cols=206 Identities=25% Similarity=0.388 Sum_probs=181.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEEcCeeCCCChHHhccceEEEecCCC--CCCCC
Q 000284 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP----TDGTAFIFGKDIRSDPKAARRLIGYCPQFDA--LLEYL 1448 (1723)
Q Consensus 1375 al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p----~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~--l~~~l 1448 (1723)
+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++... ...++.+||+||++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999988543 223457999999974 55678
Q ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc---cccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 000284 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL---KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525 (1723)
Q Consensus 1449 Tv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~ 1525 (1723)
|+.||+.+.....+......++++.++++.+++. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 9999997765544443344456788999999997 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1526 ~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+++.+++.|++++++.| +|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 160 ~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFG-TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999864334 589999999999999999999999999999999988864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=332.45 Aligned_cols=216 Identities=26% Similarity=0.417 Sum_probs=201.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC-------ccH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-------ADM 521 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~-------~~~ 521 (1723)
.|+++|+++.|+. ..+|-|++|+.++||.++|+||+|||||||++.|.=+.-|.+|+..|.|.... +..
T Consensus 2 sirv~~in~~yg~----~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFYGA----HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEccccccccc----chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 4899999999954 46999999999999999999999999999999999999999999999887542 234
Q ss_pred HHHhcceEEEccCCCCCCCCCHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHh
Q 000284 522 DEIRKGLGVCPQYDILFPELTVREHLE-MFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 522 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~-~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
.++|+.+|+|+|.-.|||+|||.|||. -.++..|+++++.+.++.++|+.+.|.++.|+.+-.|||||+||++|||||+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence 578999999999999999999999974 5678889999999999999999999999999999999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHH
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSL 668 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~ 668 (1723)
.+|+||++||||++|||+-..++.++|+++.+ |.|-+++||..+.|...+.||+.|++|++++.|+..
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999999999999975 999999999999999999999999999999999863
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=377.00 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=191.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~-----~G~i~i~G~~i~~-- 1426 (1723)
+++++|++|.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6899999999952 46999999999999999999999999999999999999875 8999999998853
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
.....++.+||+||++.+++.+|+.||+.+.....+.. +++..+.+.++++.+++. +..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23355778999999999999899999998755444432 233445566677777653 456889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + +|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-V-TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 6899999999999999999999999999999999887
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
..
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 54
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=336.07 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChH----
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK---- 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~---- 1429 (1723)
+|++++++|.-+.+. +...+|++|+|.|++||.+||+||+|||||||+-+++|+..|++|+|++.|+++.+-.+
T Consensus 6 ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 789999999987653 46779999999999999999999999999999999999999999999999999866322
Q ss_pred Hh-ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1430 AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1430 ~~-~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
.. .+++|+|+|...|.|+||..||+.+.+.++|-...+..+.+.++|+++||.+..+.++++||||+||||+||||++.
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence 22 36799999999999999999999999999997666667788999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEE
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1573 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~ 1573 (1723)
.|+|||-||||-+||-.+-+.+.+++-+++++.| +|.+++|||...+.+ |+|++-|.+|+++.
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G-~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERG-TTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC-ceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 9999999999999999999999999999987765 799999999998876 99999999999975
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=372.92 Aligned_cols=216 Identities=27% Similarity=0.420 Sum_probs=187.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCCChHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRSDPKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~---p~~G~i~i~G~~i~~~~~~ 1430 (1723)
.+.++|++++|++.+ +.+.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++. ...
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~--~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK--PDQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC--hHH
Confidence 467999999997531 13679999999999999999999999999999999999999 99999999999875 235
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCC---ChhhHHHHHHH-HHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGV---AEYRMDDVVME-KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~---~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
.++++||+||++.+++.+|++||+.+.....+. ......+.+.+ .++.+++.+..++.+++|||||||||+|||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 678899999999999999999999886554321 11222234455 88999998888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCH-HHHHHHcCEEEEEECCEEEEec
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM-NEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~-~e~~~l~drv~im~~G~l~~~g 1575 (1723)
+.+|++|||||||+|||+.+++.+++.|+++++ +| .|||++||++ +++..+|||+++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RN-RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999863 44 5899999999 6999999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=398.70 Aligned_cols=229 Identities=28% Similarity=0.470 Sum_probs=205.0
Q ss_pred cceEEEEeEEEEecCc-------CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccC--
Q 000284 447 GRCIQIRKLHKVYATK-------RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-- 517 (1723)
Q Consensus 447 ~~~i~i~~l~k~y~~~-------~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i-- 517 (1723)
.+.++++||+|.|..+ .+...||+||||++++||++||+|++|||||||.++|+|+++|++|+|.++|.+.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3679999999999852 2346899999999999999999999999999999999999999999999999873
Q ss_pred C-ccHHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc-ccccccCCCChhHHHH
Q 000284 518 T-ADMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD-KVNIVVRALSGGMKRK 592 (1723)
Q Consensus 518 ~-~~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSgGqkqr 592 (1723)
. .+....|+.+-+++|+| .|.|.+||.+.|.-...+++. ...+.++++.++++.+||.. ..++++++||||||||
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 2 23456778899999997 699999999999887776543 34666778999999999987 6899999999999999
Q ss_pred HHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 593 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
++|||||+.+|++|++|||||.||+..++++.++|+++++ |.|.|++||||+.++.+||||++|.+|++++.|+.+.+
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 89999999999999999999999999999999988777
Q ss_pred HhhhC
Q 000284 671 KHQYG 675 (1723)
Q Consensus 671 k~~~g 675 (1723)
.+..-
T Consensus 518 ~~~p~ 522 (539)
T COG1123 518 FENPQ 522 (539)
T ss_pred hcCCC
Confidence 65433
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=380.12 Aligned_cols=228 Identities=25% Similarity=0.353 Sum_probs=195.1
Q ss_pred eEEEEeEEEEcCCCC---ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h-
Q 000284 1354 IIYLRNLRKVYPGGK---RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P- 1428 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~---~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~- 1428 (1723)
+|+++||+|.|+.+. ...++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 689999999996310 00135699999999999999999999999999999999999999999999999987542 2
Q ss_pred --HHhccceEEEecCC--CCCCCCCHHHHHHHHHH-HcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHH
Q 000284 1429 --KAARRLIGYCPQFD--ALLEYLTVQEHLELYAR-IKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSV 1502 (1723)
Q Consensus 1429 --~~~~~~ig~~pQ~~--~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~i 1502 (1723)
...++.+||+||++ .+++..|+.|++.+... ..+.......+.+.++++.+++. ...++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 23567899999997 46677899999876433 22444444455788999999996 57899999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||||+.+|++|||||||+|||+.+++.+.+.|++++++.+ +|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG-TACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC-cEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 9999999999999999999999999999999999864434 689999999999999999999999999999999888653
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=388.51 Aligned_cols=222 Identities=26% Similarity=0.424 Sum_probs=196.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..|+++|+++.|.+. ...+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~~--~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNR--TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 479999999999642 2469999999999999999999999999999999999986 579999999999853
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~-~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
....+|+.+|||||++.+|+ .|++||+.|.....+...+ ..++.+.++++.++|. +..++.+.+||||||||++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred chHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 23467889999999999986 6999999986554444433 3345578889999874 3467889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+||||||||+|||+.+++.+++.|+++++++|||++||+++++..+||||++|++|++++.|++.++..
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999999888999999999999999999999999999999999988753
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=377.23 Aligned_cols=220 Identities=25% Similarity=0.405 Sum_probs=189.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
|+++|+++.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++.+
T Consensus 1 i~~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGD--GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCC--CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 4689999999643 1369999999999999999999999999999999999999999999999988753 345567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
||+||++.+++ .||+||+.++... .......+ .+.+.++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998886 6999999875421 12222221 245566666 67777888899999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++.. |||+++|++|++++.|++.++...++
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 99999999999999999999999999999888999999999999986 99999999999999999988876654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=380.93 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
+.|+++||+|.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 9 ~~l~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 47999999999953 469999999999999999999999999999999999986 489999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
+....++.+||++|++.+++. |+.||+.+.....+.. ...++++.++++.+++. +..++.+.+||||||||++|
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 344567889999999988874 9999998876544432 23446677888888874 34688899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe---------CCEEEEecC
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA---------NGSLKCCGS 666 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~---------~G~l~~~Gs 666 (1723)
||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+||||++|+ +|++++.|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999999877899999999999999999999998 899999999
Q ss_pred HHHHHh
Q 000284 667 SLFLKH 672 (1723)
Q Consensus 667 ~~~Lk~ 672 (1723)
+.++.+
T Consensus 243 ~~~~~~ 248 (264)
T PRK14243 243 TEKIFN 248 (264)
T ss_pred HHHHHh
Confidence 988854
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=369.99 Aligned_cols=214 Identities=27% Similarity=0.455 Sum_probs=187.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-h---H
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-P---K 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~---~ 1429 (1723)
+++++|+++.|+++. +.+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++... . .
T Consensus 1 ~l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 1 VISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred CEEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHH
Confidence 378999999996421 125699999999999999999999999999999999999999999999999988532 1 2
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~ 1508 (1723)
..++.+||+||++.+++.+|+.||+.+...... ....+..+.+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 356789999999999998999999988665442 3444556678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1509 ~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
+|++|||||||+|||+.+++.+++.|+++.++.+ +|||++||+++. ..+||||++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQG-CTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 9999999999999999999999999999864344 689999999985 468999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=379.14 Aligned_cols=220 Identities=26% Similarity=0.420 Sum_probs=192.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~- 1426 (1723)
.+++++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 24 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 24 TALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred cEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 47999999999953 459999999999999999999999999999999999987 489999999999853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||+||++.+++. |++||+.+.....+.. +...++.+.++++.+++. +..++++.+||||||||
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred ccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHH
Confidence 233567889999999988885 9999998765555542 223345677888888885 35688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||+++++..+|||+++|++|++++.|++++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-K-YTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-C-CeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999999999985 3 4 589999999999999999999999999999999888
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 254 ~~~ 256 (272)
T PRK14236 254 LFT 256 (272)
T ss_pred Hhc
Confidence 753
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=369.37 Aligned_cols=200 Identities=26% Similarity=0.409 Sum_probs=180.1
Q ss_pred EEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----c-HHHHhc
Q 000284 452 IRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----D-MDEIRK 526 (1723)
Q Consensus 452 i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~-~~~~r~ 526 (1723)
++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ....++
T Consensus 1 i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFGD----KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRRE 76 (206)
T ss_pred CcceEEEECC----EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHh
Confidence 4689999953 469999999999999999999999999999999999999999999999998642 1 223567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEe
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVV 606 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vl 606 (1723)
.+||++|++.+++.+|++||+.+.....+....+..++++++++.+|+.+..++.+.+||||||||++||+||+.+|+++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred CeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 89999999999999999999998766556666666778999999999998899999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEE
Q 000284 607 ILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 656 (1723)
Q Consensus 607 iLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il 656 (1723)
||||||+|||+.+++.++++|+++. +|+|||++||++++++ +||||++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999985 4899999999999875 79999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=376.97 Aligned_cols=223 Identities=23% Similarity=0.375 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCee-----CCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD-----IRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~-----i~~- 1426 (1723)
++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 46899999999963 458999999999999999999999999999999999999999999999987 543
Q ss_pred ChHH----hccceEEEecCCC--CCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHH
Q 000284 1427 DPKA----ARRLIGYCPQFDA--LLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1427 ~~~~----~~~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kq 1498 (1723)
.... .++.+||++|++. +++.+|+.||+.......+ ......++.+.++++.+++. ...++.+.+|||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 2221 2467999999974 4556789999865322111 11223446778899999997 4789999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
||+|||||+.+|++|||||||+|||+.+++.+++.|+++.++.| .|||++||+++++..+|||+++|++|+++..|+++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG-LAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864434 58999999999999999999999999999999988
Q ss_pred HHHh
Q 000284 1579 HLKT 1582 (1723)
Q Consensus 1579 ~l~~ 1582 (1723)
++.+
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 8754
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=376.14 Aligned_cols=219 Identities=25% Similarity=0.419 Sum_probs=190.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~-- 1426 (1723)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 5899999999963 4599999999999999999999999999999999999986 59999999998842
Q ss_pred ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHHH
Q 000284 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKLS 1501 (1723)
Q Consensus 1427 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl~ 1501 (1723)
.....++.+||+||++.+++ .|+.||+.+.....+.. ....++++.+.++.+++. +..++++.+|||||||||+
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456778999999998887 89999998754444432 233445677788888874 4567899999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1502 iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
|||||+.+|+||||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-K-N-YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999985 3 3 58999999999999999999999999999999988774
Q ss_pred h
Q 000284 1582 T 1582 (1723)
Q Consensus 1582 ~ 1582 (1723)
+
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 3
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=416.74 Aligned_cols=220 Identities=24% Similarity=0.408 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-H
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-A 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~-~ 1430 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... .. .
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999953 4699999999999999999999999999999999999999999999999998542 22 2
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHc---C-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIK---G-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~---g-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
.++++||+||++.+++.+||+||+.+....+ + .+..+.++++.++++.+++.+..++++++|||||||||+||+||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 3567999999999999999999998754322 1 22333456788899999999888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+.+|++|||||||+|||+.+++.+++.|++++ +.| +|||++|||+++++.+||||++|++|++++.|+++++
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~-~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELK-SQG-RGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999999986 344 5899999999999999999999999999999988754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=375.60 Aligned_cols=221 Identities=22% Similarity=0.405 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT-----DGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~-----~G~i~i~G~~i~~- 1426 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46899999999953 45999999999999999999999999999999999999997 6999999998753
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||+||++.+++. |++||+.+....++... +..++.+.+.++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 233567889999999988874 99999987655544432 23445667778888864 45789999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.++++|+++. + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-N-YTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999983 3 4 589999999999999999999999999999999988
Q ss_pred HHhh
Q 000284 1580 LKTR 1583 (1723)
Q Consensus 1580 l~~~ 1583 (1723)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=376.44 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=192.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP--P---TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~--p---~~G~i~i~g~~i~~--- 519 (1723)
..|+++||+|.|+. +.+++|+||++.+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 4 KIITSSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred ceEEEEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 46999999999953 469999999999999999999999999999999999975 5 59999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~ 594 (1723)
+....++.+||+||++.+++ .|++||+.+.....+.. .+..++++.+.++.+++. +..++.+.+||||||||++
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 23456788999999999888 69999998876555543 233456677888888764 4568889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
|||||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+||||++|++|+++..|++..+..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998767899999999999999999999999999999998866643
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=376.38 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=191.8
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCCC
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRSD 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~--p---~~G~i~i~G~~i~~~ 1427 (1723)
++|+++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++...
T Consensus 5 ~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 57999999999953 469999999999999999999999999999999999976 3 489999999998642
Q ss_pred ---hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1428 ---PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1428 ---~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
....++.+||+||++.+++ .||+||+.+....++.. ....++.+.++++.+++. +..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred ccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 3455778999999998887 49999999876655532 233455677888888874 34689999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|+++||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~-~-~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-K-E-YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-h-C-ceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 235 ~~~ 237 (253)
T PRK14261 235 IFE 237 (253)
T ss_pred HHh
Confidence 754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=381.18 Aligned_cols=217 Identities=24% Similarity=0.319 Sum_probs=190.8
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--------cceEEEccccCCc-c
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--------TGDALVFGKNITA-D 520 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~--------~G~i~i~g~~i~~-~ 520 (1723)
++++||++.|++ +.+++|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .
T Consensus 2 l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 2 LTADHLHVARRH----RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred eEEEEEEEEECC----EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 789999999953 46999999999999999999999999999999999999998 9999999998753 3
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK----GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLG 596 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA 596 (1723)
....++.+||+||++.++..+|++||+.+..... +....+.++++.++++.+|+.+..++++.+||||||||++||
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 4456677999999987656689999998753211 111233456788999999999989999999999999999999
Q ss_pred HHHh---------cCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 597 IALI---------GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 597 ~al~---------~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+ .+|++|||||||+|||+.+++.++++|++++ + |+|||++||+++++..+|||+++|++|+++..|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 5999999999999999999999999999985 3 899999999999999999999999999999999
Q ss_pred CHHHH
Q 000284 666 SSLFL 670 (1723)
Q Consensus 666 s~~~L 670 (1723)
++.++
T Consensus 238 ~~~~~ 242 (272)
T PRK13547 238 APADV 242 (272)
T ss_pred CHHHH
Confidence 87665
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=364.29 Aligned_cols=197 Identities=20% Similarity=0.281 Sum_probs=172.3
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEEcCeeCCCChHH
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY---PTDGTAFIFGKDIRSDPKA 1430 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~---p~~G~i~i~G~~i~~~~~~ 1430 (1723)
.+.++|++|.|+.+. +++.+++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 478999999998642 35679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
.++.+||+||++.+++.+|++||+.+..... .++++..||||||||++||+||+.+|
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p 137 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRA 137 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCC
Confidence 6778999999999999999999998653211 56788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
++|||||||+|||+.+++.+++.|++++++.+.++||+++|+++++.++|||+++|++|+++..|
T Consensus 138 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999865434334555667789999999999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=379.34 Aligned_cols=223 Identities=19% Similarity=0.382 Sum_probs=191.7
Q ss_pred CCcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeC
Q 000284 1350 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDI 1424 (1723)
Q Consensus 1350 ~~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i 1424 (1723)
+..++++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++
T Consensus 20 ~~~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 93 (271)
T PRK14238 20 PKKVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 (271)
T ss_pred CCceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEc
Confidence 34568999999999963 458999999999999999999999999999999999997 6999999999988
Q ss_pred CC---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcC----CccccCCCCCCCChhH
Q 000284 1425 RS---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFD----LLKHAKKPSFTLSGGN 1496 (1723)
Q Consensus 1425 ~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgG~ 1496 (1723)
.. .....++.+||+||++.+++ .|++||+.+.....+... ...++.+.+.++.++ +.+..++++.+|||||
T Consensus 94 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 94 FDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred ccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHH
Confidence 42 23455778999999998887 599999987654444332 233445667777775 3455788999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1497 kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + +|||++||+++++..+|||+++|++|+++..|+
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-D-YSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-C-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 3 4 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000284 1577 PQHLKT 1582 (1723)
Q Consensus 1577 ~~~l~~ 1582 (1723)
++++.+
T Consensus 250 ~~~~~~ 255 (271)
T PRK14238 250 TDKIFS 255 (271)
T ss_pred HHHHHc
Confidence 988754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=422.11 Aligned_cols=225 Identities=24% Similarity=0.365 Sum_probs=200.0
Q ss_pred ceEEEEeEEEEecCcC-------CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCcc
Q 000284 448 RCIQIRKLHKVYATKR-------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD 520 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~-------~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~ 520 (1723)
+.++++||+|.|+... +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 5799999999996321 124699999999999999999999999999999999999999999999999988531
Q ss_pred ----HHHHhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHH
Q 000284 521 ----MDEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRK 592 (1723)
Q Consensus 521 ----~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqr 592 (1723)
....|++|||+||++ .+++.+||.||+.+....++. ...+.++++.++|+.+||. +..++++++||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 234567899999997 589999999999886655554 3445667899999999996 57899999999999999
Q ss_pred HHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 593 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|+|||||+.+|++|||||||+|||+.++++++++|++++ + |.|||++|||++++..+||||++|++|++++.|++.++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999985 3 89999999999999999999999999999999999887
Q ss_pred Hh
Q 000284 671 KH 672 (1723)
Q Consensus 671 k~ 672 (1723)
..
T Consensus 552 ~~ 553 (623)
T PRK10261 552 FE 553 (623)
T ss_pred hc
Confidence 54
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=374.11 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=177.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHH
Q 000284 1376 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLE 1455 (1723)
Q Consensus 1376 l~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~ 1455 (1723)
++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..... ..+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999999999998864221 2589999999999999999998
Q ss_pred HHHH--HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000284 1456 LYAR--IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533 (1723)
Q Consensus 1456 ~~~~--~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~ 1533 (1723)
+... ..+..+.+.++++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 7532 22344444556678899999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1534 l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
|++++++.| +|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 157 l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999864444 5899999999999999999999999999988876554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=377.22 Aligned_cols=220 Identities=23% Similarity=0.413 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT-----TGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~-----~G~i~i~g~~i~~--- 519 (1723)
..|+++|++|.|++ ..+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 6 PAIKVNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred ceEEEeeEEEEeCC----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 36999999999953 35999999999999999999999999999999999999996 8999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLS 594 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~ 594 (1723)
....+|+.++|+||++.+++ +|+.||+.+.....+. +..+.++++.++++.+++.+ ..++.+.+||||||||++
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 33456788999999998888 8999999887655554 33444567889999999853 568889999999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeC-----CEEEEecCH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMAN-----GSLKCCGSS 667 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~-----G~l~~~Gs~ 667 (1723)
|||||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+||||++|++ |+++..|++
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLT 240 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence 9999999999999999999999999999999999974 489999999999999999999999999 999999999
Q ss_pred HHHHh
Q 000284 668 LFLKH 672 (1723)
Q Consensus 668 ~~Lk~ 672 (1723)
.++.+
T Consensus 241 ~~~~~ 245 (261)
T PRK14258 241 KKIFN 245 (261)
T ss_pred HHHHh
Confidence 88743
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=376.72 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=191.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~- 1426 (1723)
.+|+++|++|.|++ +.+++|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 36899999999953 4599999999999999999999999999999999999985 58999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++++||+||++.+++ +|++||+.+....++ .++.+..+.+.++++.+++. +..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 22445678999999998887 899999987654443 23334455677888988873 46788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE-----CCEEEEe
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV-----GGQLRCI 1574 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~-----~G~l~~~ 1574 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|+ +|++++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-E-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999998 5999999
Q ss_pred cChhHHHh
Q 000284 1575 GSPQHLKT 1582 (1723)
Q Consensus 1575 g~~~~l~~ 1582 (1723)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (259)
T PRK14260 236 GVTTQIFS 243 (259)
T ss_pred CCHHHHhc
Confidence 99998753
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=366.89 Aligned_cols=201 Identities=27% Similarity=0.357 Sum_probs=182.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcce
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~i 528 (1723)
.++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++++
T Consensus 1 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~ 76 (204)
T PRK13538 1 MLEARNLACERDE----RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL 76 (204)
T ss_pred CeEEEEEEEEECC----EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe
Confidence 3789999999953 469999999999999999999999999999999999999999999999998865445567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeec
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliL 608 (1723)
+|++|++.+++.+|+.||+.++....+. ..+++++++++.+||.+..++++.+||||||||++||+||+.+|+++||
T Consensus 77 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 77 LYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred EEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999987655442 2346788999999999888999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEE
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 656 (1723)
Q Consensus 609 DEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il 656 (1723)
||||+|||+.+++.++++|++++ +|+|||++||++++++...+|++.+
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999985 5899999999999999988888776
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=373.56 Aligned_cols=204 Identities=27% Similarity=0.420 Sum_probs=182.2
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEccccCCccHHHHhcceEEEccCCC--CCCCC
Q 000284 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEIRKGLGVCPQYDI--LFPEL 541 (1723)
Q Consensus 468 al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p----~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~--l~~~l 541 (1723)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.+||++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999987532 233468999999984 55678
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC---cccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHH
Q 000284 542 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA---DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618 (1723)
Q Consensus 542 Tv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~---~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~ 618 (1723)
|+.||+.+.....+......++++.++++.+++. +..++++.+|||||||||+|||||+.+|+++||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 9999998766555544445567899999999998 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 619 SMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 619 ~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+++.+++.|++++ .|+|||++||+++++..+|||+++|++|++.+.|++.++..
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999985 38999999999999999999999999999999999988754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=375.09 Aligned_cols=222 Identities=22% Similarity=0.381 Sum_probs=193.3
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcC------eeCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG------KDIR 1425 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G------~~i~ 1425 (1723)
.+++.++|++|+|++ +.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++| .++.
T Consensus 8 ~~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 367999999999963 5699999999999999999999999999999999999999997776665 4443
Q ss_pred C-ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1426 S-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV-AEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1426 ~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
. .....++.+||+||++.+++.+|++||+.+.....+. ++.+..+.+.++++.+++. +..++++..||||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 2 3345678899999999999889999999886554443 2334556778899999985 35688999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+++.|.+++ + + +|||++||+++++..+|||+++|++|++++.|++++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-E-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-cEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999984 3 3 689999999999999999999999999999999988
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+.+
T Consensus 239 ~~~ 241 (257)
T PRK14246 239 IFT 241 (257)
T ss_pred HHh
Confidence 764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=378.82 Aligned_cols=219 Identities=25% Similarity=0.386 Sum_probs=192.0
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
+.|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 19 ~~l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 19 SVFEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred ceEEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 57999999999953 4699999999999999999999999999999999999863 69999999998742
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
.....|+.+||+||++.+++. ||.||+.+....++.. ...++.+.++++.+++. +..++++.+||||||||++|
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 234567889999999988875 9999998865544432 22345677788888873 45688899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe---------CCEEEEecC
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA---------NGSLKCCGS 666 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~---------~G~l~~~Gs 666 (1723)
||||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|+ +|++++.|+
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999999878999999999999999999999997 899999999
Q ss_pred HHHHHh
Q 000284 667 SLFLKH 672 (1723)
Q Consensus 667 ~~~Lk~ 672 (1723)
+.++.+
T Consensus 253 ~~~~~~ 258 (274)
T PRK14265 253 TEQMFG 258 (274)
T ss_pred HHHHHh
Confidence 877743
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=377.72 Aligned_cols=220 Identities=24% Similarity=0.378 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCCC
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRSD 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~~ 1427 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 47999999999963 4699999999999999999999999999999999999986 799999999988642
Q ss_pred --hHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcC-CChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000284 1428 --PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKG-VAEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1428 --~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g-~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrl 1500 (1723)
....+++++|+||++.+++ +|++||+.+.....+ .+..+..+.+.++++.+++.+ ..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 3356778999999998887 899999987543322 233444456677889999863 35788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + +|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-D-R-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999985 3 3 5899999999999999999999999999999999988
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
.+
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 64
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=375.55 Aligned_cols=219 Identities=26% Similarity=0.374 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~~--- 519 (1723)
..+.++++++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 7 ~~~~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 7 IVMDCKLDKIFYG----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred ceEEEEeEEEEeC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 5789999999994 34699999999999999999999999999999999999987 79999999998752
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD----KVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~LSgGqkqrl~l 595 (1723)
.....++.+||+||++.++ .+|+.||+.+.....+.. .+.++++.++++.+++.+ ..++++++||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 2335678899999999888 589999998876554432 344568899999999854 3467789999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe--------CCEEEEecCH
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMA--------NGSLKCCGSS 667 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~--------~G~l~~~Gs~ 667 (1723)
||||+.+|+++||||||+|||+.++++++++|+++++++|||++||+++++..+||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999999778999999999999999999999996 8999999998
Q ss_pred HHHHh
Q 000284 668 LFLKH 672 (1723)
Q Consensus 668 ~~Lk~ 672 (1723)
.++.+
T Consensus 241 ~~~~~ 245 (261)
T PRK14263 241 AQIFQ 245 (261)
T ss_pred HHHHh
Confidence 77743
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=376.22 Aligned_cols=219 Identities=24% Similarity=0.418 Sum_probs=183.3
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
++++|+++.|+++ .+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999632 2469999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
.+||+||++.+++ .|++||+.+... +.......+ ...++++.+ ++....++++.+|||||||||+|||||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 8999999988775 699999976421 222211111 122344444 555567889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~ 1584 (1723)
+.+|++|||||||+|||+.+++.+++.|++++ + | +|||++||++++++ .|||+++|++|+++..|+++++.++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-G-RTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999984 3 4 58999999999996 59999999999999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=376.25 Aligned_cols=216 Identities=26% Similarity=0.399 Sum_probs=190.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEccccCCccHHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITADMDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p----~~G~i~i~g~~i~~~~~~~ 524 (1723)
.++++||+|.| + +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 4 ~l~~~~l~~~~-~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CALR 77 (254)
T ss_pred EEEEeCeEEEe-c----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cccc
Confidence 68999999999 2 2599999999999999999999999999999999999999 99999999998852 2223
Q ss_pred hcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCChhHHHHHHHHHHH
Q 000284 525 RKGLGVCPQYDI--LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD---KVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 525 r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~---~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
++.+||+||++. +.+.+|+.+++.......+... .++++.++++.++|.+ ..++.+.+||||||||++|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 467999999974 4566899999877655445433 2367899999999987 46899999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+.+|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|+++..|++.++.+
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999984 3 8999999999999999999999999999999999877753
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=370.75 Aligned_cols=213 Identities=26% Similarity=0.375 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
++|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 47999999999953 459999999999999999999999999999999999999999999999998864 34456
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc-cccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL-KHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++.+||+||++.+++ .|++||+.+....++... .++++.++++.+++. ...++++.+|||||||||+|||||+.+|
T Consensus 80 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 80 RQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred HhccEEEeccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 778999999998887 599999987554443221 234567899999996 5689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE-CCEEEEecC
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV-GGQLRCIGS 1576 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~-~G~l~~~g~ 1576 (1723)
+++||||||+|||+.+++.+.+.|++++++.| +|||++||++++++ .|||+++|+ ++..+.+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQN-IAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999865444 58999999999997 599999995 455555554
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=374.09 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=186.4
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
|+++|+++.|++. ++.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999642 2358999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
.+||+||++.+++ .|++||+.+.... .......+ .+.+.++.+ ++....++++.+||||||||++||+||
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 8999999998886 6999999765321 11111111 234455555 677778889999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~ 1585 (1723)
+.+|++|||||||+|||+.+++.+++.|++++ + + .|||++||++++++. |||+++|++|++++.|+++++..+++
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLM-K-N-RTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C-CEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 99999999999999999999999999999984 3 4 589999999999986 99999999999999999999876654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=373.18 Aligned_cols=220 Identities=24% Similarity=0.393 Sum_probs=185.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.
T Consensus 2 ~l~~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 3789999999953 2359999999999999999999999999999999999999999999999988753 34556788
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHh
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSgGqkqrl~lA~al~ 600 (1723)
+||+||++.+++. |+.||+.++.... ......+ .+++.++.+ ++....++.+.+||||||||++||+||+
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999988876 9999998753211 1111111 123334443 5555567778999999999999999999
Q ss_pred cCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 601 ~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++.. |||+++|++|++...|+..++..++|
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999998778999999999999975 99999999999999999877766543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=415.34 Aligned_cols=128 Identities=28% Similarity=0.468 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q 000284 1447 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDP---PIVILDEPSTGM 1522 (1723)
Q Consensus 1447 ~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrl~iA~al~~~p---~vllLDEPT~gL 1522 (1723)
.||+.|++.++..++++ ....+.|+.+||.. ..++++.+||||||||+.||++|+.+| +++||||||+||
T Consensus 791 ~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 791 DMTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred cCcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 37999999998765432 23357899999975 579999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE------ECCEEEEecChhHHHhh
Q 000284 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM------VGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1523 D~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im------~~G~l~~~g~~~~l~~~ 1583 (1723)
|+..++.+++.|+++. ++| .|||++||++++++ .||+|++| .+|++++.|+++++...
T Consensus 865 D~~~~~~L~~~L~~l~-~~G-~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 865 HFEDIRKLLEVLHRLV-DKG-NTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred CHHHHHHHHHHHHHHH-hCC-CEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 9999999999999986 445 58999999999986 69999999 79999999999998753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=383.89 Aligned_cols=224 Identities=25% Similarity=0.437 Sum_probs=193.3
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1425 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~ 1425 (1723)
...+|+++|++++|.+ +.+.+|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 77 ~~~~i~~~nls~~y~~----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 77 HANVFEIRNFNFWYMN----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred cCceEEEEeeEEEecC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3458999999999963 23469999999999999999999999999999999999986 57999999999986
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhh-HHHHHHHHHHHcCCc----cccCCCCCCCChhHH
Q 000284 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR-MDDVVMEKLVEFDLL----KHAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1426 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~-~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~k 1497 (1723)
. ....+|+++|||||++.++. .|++||+.+.....+....+ .++.+.+.++.++|. ...++++.+||||||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence 3 22456788999999998885 79999998755444443322 234467788888773 356889999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
|||+|||||+.+|+||||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+||||++|++|++++.|++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~-~-~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-K-K-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999985 3 3 6899999999999999999999999999999999
Q ss_pred hHHHh
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++.+
T Consensus 309 ~~l~~ 313 (329)
T PRK14257 309 KTIFI 313 (329)
T ss_pred HHHhc
Confidence 99864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=414.07 Aligned_cols=220 Identities=25% Similarity=0.369 Sum_probs=195.1
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEEcCeeCCCCh-H
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGKDIRSDP-K 1429 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p--~~G~i~i~G~~i~~~~-~ 1429 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.++.... .
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999953 4699999999999999999999999999999999999996 8999999999986532 2
Q ss_pred -HhccceEEEecCCCCCCCCCHHHHHHHHHHHc--C-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000284 1430 -AARRLIGYCPQFDALLEYLTVQEHLELYARIK--G-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1430 -~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--g-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
..++.+||+||++.+++.+|++||+.+....+ + .+..+..+++.++++.+++.+..++++++|||||||||+||+|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 34577999999998999999999998765432 2 2333445678899999999888999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
|+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++|++|+++..|+++++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~-~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHG-IACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999986 444 5899999999999999999999999999999988765
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=414.50 Aligned_cols=220 Identities=27% Similarity=0.399 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hH-H
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK-A 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~-~ 1430 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 47999999999953 4699999999999999999999999999999999999999999999999998653 22 2
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH----HcCC---ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHH
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYAR----IKGV---AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA 1503 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~----~~g~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA 1503 (1723)
.++++||+||++.+++.+||+||+.+... ..+. +..+.++++.++++.+++.+..++++++|||||||||+||
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 34679999999989999999999976431 1222 2234456788899999999889999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1504 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1504 ~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+||+.+|++|||||||+|||+.+++.+++.|+++++ +| +|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EG-TAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999964 44 5899999999999999999999999999999988765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=339.28 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=202.7
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----- 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~----- 1427 (1723)
..|+++||.|+|| ...+|++||++-++|+++.|+|.+||||||++|||.=+.+|+.|.|.++|+.++..
T Consensus 5 ~~l~v~dlHK~~G------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYG------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhcc------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 4689999999996 46799999999999999999999999999999999999999999999999987321
Q ss_pred ---------hHHhccceEEEecCCCCCCCCCHHHHHHH-HHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHH
Q 000284 1428 ---------PKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1428 ---------~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k 1497 (1723)
...+|.++|+|+|+..||..|||.||+.- ....-|.++.+..++++.+|.++|+.+..+.++..||||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 12467789999999999999999999754 23445888888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 qrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
||++|||||+.+|+++++|||||+|||+-.-++.+.+++++ ++| +|.+++||.|.++..++++|+.+++|++-+.|+|
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LA-eEg-rTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLA-EEG-RTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHH-HhC-CeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 99999999999999999999999999999999999999997 455 5899999999999999999999999999999999
Q ss_pred hHHHh
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++..
T Consensus 237 ~qvf~ 241 (256)
T COG4598 237 EQVFG 241 (256)
T ss_pred HHHhc
Confidence 99753
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=374.18 Aligned_cols=218 Identities=24% Similarity=0.436 Sum_probs=188.8
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC---
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS--- 1426 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~--- 1426 (1723)
-+++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 368999999952 469999999999999999999999999999999999986 479999999998753
Q ss_pred ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC--hhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000284 1427 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~--~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrl 1500 (1723)
.....++++||+||++.+++. |++||+.+....++.. ....++.+.++++.+++.+ ..++++.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 123457789999999988875 9999998764444432 2334456778899999964 46788999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|+++. + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-N-FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 5899999999999999999999999999999999887
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
.+
T Consensus 236 ~~ 237 (251)
T PRK14244 236 FK 237 (251)
T ss_pred hc
Confidence 54
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=365.86 Aligned_cols=201 Identities=28% Similarity=0.484 Sum_probs=177.6
Q ss_pred EEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-----hHHh
Q 000284 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-----PKAA 1431 (1723)
Q Consensus 1357 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-----~~~~ 1431 (1723)
++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4689999953 4699999999999999999999999999999999999999999999999986421 1235
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
++.+||++|++.+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999999889999999986655555555556678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im 1566 (1723)
+|||||||+|||+.+++.+++.|+++++ +| .|||++||++++++ +|||+++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELND-EG-KTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999863 44 58999999999775 79999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=376.46 Aligned_cols=219 Identities=25% Similarity=0.421 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~- 1426 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 9 ~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 47999999999953 469999999999999999999999999999999999986 489999999998742
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
.....++++||++|++.+++ .|+.||+.+.....+.. ...++++.++++.+++. +..++++.+||||||||+
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 33456778999999998887 59999998765444432 22344566777887774 356889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE---------CCEE
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV---------GGQL 1571 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~---------~G~l 1571 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+||||++|+ +|++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-E-Q-YTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999999985 3 3 589999999999999999999998 8999
Q ss_pred EEecChhHHHh
Q 000284 1572 RCIGSPQHLKT 1582 (1723)
Q Consensus 1572 ~~~g~~~~l~~ 1582 (1723)
++.|+++++.+
T Consensus 238 ~~~~~~~~~~~ 248 (264)
T PRK14243 238 VEFDRTEKIFN 248 (264)
T ss_pred EEeCCHHHHHh
Confidence 99999999864
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=372.78 Aligned_cols=220 Identities=23% Similarity=0.411 Sum_probs=190.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P---TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~--p---~~G~i~i~G~~i~~- 1426 (1723)
.+|+++|++|.|++ +.+++++||+|++||++||+|+||||||||+++|+|+.+ | ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 57999999999963 469999999999999999999999999999999999975 5 59999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCCh-hhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRK 1499 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqr 1499 (1723)
.....++.+||+||++.+++ .|++||+.+....++... ...++.+.+.++.+++. +..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23345678999999998887 799999987655555432 22344566778888763 45788999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhH
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~ 1579 (1723)
++|||||+.+|++|||||||+|||+.+++.+.+.|++++ + + .|||++||+++++..+||||++|++|+++..|++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR-D-Q-YTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH-h-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999985 3 3 589999999999999999999999999999999888
Q ss_pred HHh
Q 000284 1580 LKT 1582 (1723)
Q Consensus 1580 l~~ 1582 (1723)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14255 234 MFL 236 (252)
T ss_pred Hhc
Confidence 754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=411.66 Aligned_cols=217 Identities=25% Similarity=0.395 Sum_probs=193.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC-hHH-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PKA- 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~-~~~- 1430 (1723)
++|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 47999999999963 4599999999999999999999999999999999999999999999999998652 233
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
.++.+||+||++.+++.+||+||+.+.... ....++++.++++.+++.+..++++++|||||||||+||+||+.+|
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 235799999999999999999999874321 1234567788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
++|||||||+|||+.+++.+++.|+++++ +| +|||++|||+++++.+||||++|++|++++.|+++++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLA-QG-VGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999864 44 58999999999999999999999999999999987763
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=377.06 Aligned_cols=223 Identities=27% Similarity=0.359 Sum_probs=195.2
Q ss_pred eEEEEeEEEEecCc-----CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----
Q 000284 449 CIQIRKLHKVYATK-----RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA---- 519 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~-----~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~---- 519 (1723)
.|+++||+|.|+.. ..++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 013569999999999999999999999999999999999999999999999998753
Q ss_pred cHHHHhcceEEEccCC--CCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHH
Q 000284 520 DMDEIRKGLGVCPQYD--ILFPELTVREHLEMFAV-LKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~-~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~l 595 (1723)
.....++.+||+||++ .+++..|+.|++.+... ..+....+..++++++++.+|+. ...++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1234678899999997 46778999999876543 23444555566889999999997 57899999999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
||||+.+|++|||||||+|||+.+++.+.++|++++ + ++|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999999999999999999985 3 899999999999999999999999999999999987764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=373.26 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=194.9
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---c
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA---D 520 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~---~ 520 (1723)
.++++||++.|++ +.+++|+||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.. +
T Consensus 3 ~l~~~~v~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 3 RIEVENLNTYFDD----AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred EEEEEeEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 4889999999953 469999999999999999999999999999999999864 489999999998753 3
Q ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----cccccccCCCChhHHHHHHH
Q 000284 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV-KEELLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 521 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~-~~~~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqrl~l 595 (1723)
....++++|||||++.+|+. |+.||+.+.....+. +.+..++++.++++.+|+. +..++++.+||||||||++|
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 44667899999999999985 999999876544443 3345667889999999984 34688899999999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
||||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|++.+.|++.++...
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999998789999999999999999999999999999999998887543
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=373.93 Aligned_cols=221 Identities=23% Similarity=0.395 Sum_probs=189.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcccc-----CCc-cH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKN-----ITA-DM 521 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~-----i~~-~~ 521 (1723)
+.|+++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.. ..
T Consensus 2 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 2 PLLQVSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred ceEEEeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH
Confidence 36899999999953 358999999999999999999999999999999999999999999999976 532 22
Q ss_pred H----HHhcceEEEccCCC--CCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHH
Q 000284 522 D----EIRKGLGVCPQYDI--LFPELTVREHLEMFAVLKG-VKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKL 593 (1723)
Q Consensus 522 ~----~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~g-~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl 593 (1723)
. ..++.+||++|++. +++.+|+.||+.......+ ......++++.++++.+|+. +..++.+.+||||||||+
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 2 23467999999974 4566799999875432111 12223457788999999997 478999999999999999
Q ss_pred HHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 594 SLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 594 ~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~-~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
+|||||+.+|++|||||||+|||+.+++.++++|+++. + |.|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999874 3 899999999999999999999999999999999987765
Q ss_pred h
Q 000284 672 H 672 (1723)
Q Consensus 672 ~ 672 (1723)
.
T Consensus 238 ~ 238 (253)
T TIGR02323 238 D 238 (253)
T ss_pred c
Confidence 3
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=375.02 Aligned_cols=220 Identities=27% Similarity=0.431 Sum_probs=185.2
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
++++|+++.|++. +++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus 1 l~i~~l~~~~~~~-~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSR-PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCC-CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 4689999999642 12469999999999999999999999999999999999999999999999988753 334556789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
||+||++.+++ .||+||+.+....+ ..++..+ .+.+.++.+ ++....++.+.+||||||||++||+||+.
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 99999998886 69999998753221 1122111 123334444 56666788889999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhh
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~ 674 (1723)
+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++ +|||+++|++|+++..|+..++....
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 9999999999999999999999999999877899999999999997 79999999999999999987776544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=363.75 Aligned_cols=202 Identities=28% Similarity=0.392 Sum_probs=180.4
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999953 4699999999999999999999999999999999999999999999999998654455677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
+++|++|++.+++.+|+.||+.+....++. ..+++++++++.+++.+..++++.+||||||||++||+||+.+|++|
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 899999999899999999999887655442 23456788999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im 1566 (1723)
||||||+|||+.+++.+++.|++++ ++| +|||++||+++++++..+|++.+
T Consensus 152 llDEPt~~LD~~~~~~l~~~l~~~~-~~~-~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHA-EQG-GMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHH-HCC-CEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999985 344 58999999999999977777665
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=332.86 Aligned_cols=214 Identities=25% Similarity=0.417 Sum_probs=199.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc----cHHHH
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 524 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~----~~~~~ 524 (1723)
.|++++++|.-+...+...+|++++|.|++||-++|+||+|||||||+-+|+|+..|++|+|.+.|++..+ .....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 68999999999887788899999999999999999999999999999999999999999999999999854 22344
Q ss_pred h-cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCC
Q 000284 525 R-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 603 (1723)
Q Consensus 525 r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p 603 (1723)
| +++|+|+|...|.|+||..||+...+.++|-...+..+.+.++|+.+||.+..+.++++||||+||||+|||||+..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 4 789999999999999999999999999999766777788999999999999999999999999999999999999999
Q ss_pred cEeeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEE
Q 000284 604 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKC 663 (1723)
Q Consensus 604 ~vliLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~ 663 (1723)
+||+-||||-+||..+-+++.++|-.+. .|.|.+++|||...|.+ |||++-|.+|+|+.
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 9999999999999999999999998774 48999999999999986 99999999999864
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=375.01 Aligned_cols=219 Identities=28% Similarity=0.418 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEccccCC---c
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP-----TTGDALVFGKNIT---A 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p-----~~G~i~i~g~~i~---~ 519 (1723)
..|+++||+|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++. .
T Consensus 15 ~~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 15 QKSEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred ceEEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 46999999999953 3699999999999999999999999999999999999975 7999999998763 1
Q ss_pred --cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCC----cccccccCCCChhHHHH
Q 000284 520 --DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEE-LLESVVAEMVDEVGLA----DKVNIVVRALSGGMKRK 592 (1723)
Q Consensus 520 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~-~~~~~v~~~l~~~~l~----~~~~~~~~~LSgGqkqr 592 (1723)
.....++.+||+||++.+++. |++||+.+.....+.... ..++++.++++.+++. +..++.+.+||||||||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 234567889999999999986 999999876655555432 3456788888888874 45688899999999999
Q ss_pred HHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 593 l~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+...+.
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999987899999999999999999999999999999999987764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=375.33 Aligned_cols=221 Identities=22% Similarity=0.404 Sum_probs=189.8
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIR 1425 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~ 1425 (1723)
+.++|+++|+++.|++ +.+++++||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 4468999999999963 4699999999999999999999999999999999999863 6999999999885
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHH
Q 000284 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1426 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kq 1498 (1723)
. .....+++|||+||++.+++ .|+.||+.+....++... ..++.+.+.++.+++. +..++++.+|||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred cccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHH
Confidence 3 22345778999999998887 499999987654443321 2334556678887763 4578899999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE---------CC
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV---------GG 1569 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~---------~G 1569 (1723)
||+|||||+.+|++|||||||+|||+.+++.++++|++++ + + +|||++||+++++..+|||+++|+ +|
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~-~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-Q-YTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 9999999999999999999999999999999999999985 3 4 589999999999999999999998 89
Q ss_pred EEEEecChhHHHh
Q 000284 1570 QLRCIGSPQHLKT 1582 (1723)
Q Consensus 1570 ~l~~~g~~~~l~~ 1582 (1723)
++++.|+++++..
T Consensus 246 ~~~~~g~~~~~~~ 258 (274)
T PRK14265 246 KLVEFSPTEQMFG 258 (274)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999988754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=371.47 Aligned_cols=195 Identities=32% Similarity=0.478 Sum_probs=175.6
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceEEEccCCCCCCCCCHHHHHH
Q 000284 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLE 548 (1723)
Q Consensus 469 l~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 548 (1723)
++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+|+||++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999875321 12489999999999999999998
Q ss_pred HHHH--hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHH
Q 000284 549 MFAV--LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 626 (1723)
Q Consensus 549 ~~~~--~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~ 626 (1723)
++.. ..+.+..+.++++.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 7632 23445555667789999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCH
Q 000284 627 IKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS 667 (1723)
Q Consensus 627 l~~~~--~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~ 667 (1723)
|+++. .|+|||++||+++++..+||||++|++|++++.|+.
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence 99874 389999999999999999999999999999988764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=372.03 Aligned_cols=219 Identities=25% Similarity=0.420 Sum_probs=191.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS- 1426 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~- 1426 (1723)
.++.+++++++|+ ++.+++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYG------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 5789999999995 35699999999999999999999999999999999999986 79999999998853
Q ss_pred --ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc----ccCCCCCCCChhHHHHH
Q 000284 1427 --DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK----HAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrl 1500 (1723)
.....++.+||+||++.++ .+|+.||+.+.....+.. .+..+.+.++++.+++.+ ..++++++||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2234577899999999887 599999998866554432 234467788899999853 45678899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--------CCEEE
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--------GGQLR 1572 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~--------~G~l~ 1572 (1723)
+|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+||||++|+ +|+++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~-~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-D-YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 99999999999999999999999999999999999984 3 4 589999999999999999999996 89999
Q ss_pred EecChhHHHh
Q 000284 1573 CIGSPQHLKT 1582 (1723)
Q Consensus 1573 ~~g~~~~l~~ 1582 (1723)
+.|+++++.+
T Consensus 236 ~~g~~~~~~~ 245 (261)
T PRK14263 236 EMGPTAQIFQ 245 (261)
T ss_pred EeCCHHHHHh
Confidence 9999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=364.98 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=182.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.
T Consensus 10 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~ 83 (214)
T PRK13543 10 PLLAAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRF 83 (214)
T ss_pred ceEEEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhc
Confidence 57999999999953 3599999999999999999999999999999999999999999999999987542 34567
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
+||++|++.+++.+|+.||+.+....++.. .++.++++++.++|.+..++++.+||||||||++||||++.+|+++|
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 84 MAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred eEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999998876655432 34567889999999988899999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeC
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMAN 658 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~ 658 (1723)
|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999875 589999999999999999999999864
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=367.71 Aligned_cols=201 Identities=24% Similarity=0.402 Sum_probs=179.1
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
+.++++++.|+ .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 23 l~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---------- 88 (224)
T cd03220 23 LGILGRKGEVG----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---------- 88 (224)
T ss_pred hhhhhhhhhcC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----------
Confidence 67888999884 3569999999999999999999999999999999999999999999999986521
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
..+...+++.+||+||+.+.....+.+..+.++++.++++.+++.+..++++++||||||||++|||||+.+|+++|||
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1122345677999999998776666655666678899999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
|||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999885 4799999999999999999999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=377.84 Aligned_cols=213 Identities=23% Similarity=0.435 Sum_probs=190.2
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.|+++||++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++.. ....+|+.
T Consensus 2 ~i~~~nls~~~~~~--~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEG--GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCC--CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 37899999999632 2359999999999999999999999999999999999998 79999999998854 55677889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCC-----------CChhHHHHHHHH
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRA-----------LSGGMKRKLSLG 596 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~-----------LSgGqkqrl~lA 596 (1723)
|+||||++.+|+. |++||+..+. ..+ ++++.++++.+||.+..++.+.. ||||||||++||
T Consensus 79 i~~v~q~~~lf~~-tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 79 FGVIPQKVFIFSG-TFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred EEEECCCcccchh-hHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 9999999999985 9999996432 122 24677888999998888887766 999999999999
Q ss_pred HHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhh
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 597 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||+.+|+|+||||||++||+.+++.+.+.|++..+++|||++||+++++.. ||||++|++|+++..|++.+|.+.
T Consensus 151 Rall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 151 RSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred HHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence 9999999999999999999999999999999988788999999999999975 999999999999999999998763
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=346.44 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=204.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCC-ccHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~-~~~~~~r~~ 527 (1723)
+|+++||+|+|+ ++.+++|+|++|++|.|++++||||||||||+++++.++++++|+|+++|+++. ++.+++.++
T Consensus 1 MI~i~nv~K~y~----~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~ 76 (252)
T COG4604 1 MITIENVSKSYG----TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK 76 (252)
T ss_pred CeeehhhhHhhC----CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence 478999999994 567999999999999999999999999999999999999999999999999996 467788899
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 528 LGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~--~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+.-|++..-..+||+|-+.|+. .-+|....+.+..++++++.++|++..|+...+||||||||.-||+.++.+.+.
T Consensus 77 lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 77 LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 999999999999999999998853 346777777888999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHH
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk 671 (1723)
++||||.++||.....++++.|+++.+ |+||+++-||.++|..++|.|+-|.+|+++..|+++++-
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 999999999999999999999999853 999999999999999999999999999999999987753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=361.68 Aligned_cols=194 Identities=22% Similarity=0.322 Sum_probs=172.3
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEccccCCccHHHHh
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP---PTTGDALVFGKNITADMDEIR 525 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~---p~~G~i~i~g~~i~~~~~~~r 525 (1723)
.+.++||+|.|+.+++++.+++|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 57899999999876556789999999999999999999999999999999999999 899999999998865434567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 526 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
+.+||+||++.+++.+||+||+.+..... .++.+.+||||||||++||+||+.+|++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 88999999999999999999998754211 5678899999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEE-cCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLT-THSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~~--~~tiil~-TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
+||||||+|||+.+++.++++|+++++ ++|+|++ +|+++++..+||++++|++|+++..|
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999853 5676665 55679999999999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=371.09 Aligned_cols=217 Identities=24% Similarity=0.375 Sum_probs=195.4
Q ss_pred ceEEEEeEEEEecCcC----------------CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 000284 448 RCIQIRKLHKVYATKR----------------GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDAL 511 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~----------------~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~ 511 (1723)
..|+++||+|.|...+ +.+.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3588999999986521 335699999999999999999999999999999999999999999999
Q ss_pred EccccCCccHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHH
Q 000284 512 VFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKR 591 (1723)
Q Consensus 512 i~g~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkq 591 (1723)
++|. +++++|++.+.+.+|+.||+.+.....+.+.++..+.++++++.+++.+..++++++|||||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRA 150 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence 9984 5678888878888999999987766666666666677888999999999899999999999999
Q ss_pred HHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 592 KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 592 rl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|++||+||+.+|++|||||||+|||+.+++.+++.|.+++ +|+|||++||+++++..+||||++|++|++.+.|++.++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999888
Q ss_pred HhhhCC
Q 000284 671 KHQYGV 676 (1723)
Q Consensus 671 k~~~g~ 676 (1723)
..+++.
T Consensus 231 ~~~~~~ 236 (264)
T PRK13546 231 LPKYEA 236 (264)
T ss_pred HHHhHH
Confidence 776543
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=368.88 Aligned_cols=206 Identities=31% Similarity=0.503 Sum_probs=178.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
++++|++|.|+++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++.+
T Consensus 3 l~~~~l~~~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQ--EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcCCC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 7899999999642 2469999999999999999999999999999999999999999999999998753 334467789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccc-----------cCCCChhHHHHHHHHH
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV-----------VRALSGGMKRKLSLGI 597 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSgGqkqrl~lA~ 597 (1723)
||+||++.+++ .|+.||+.+.... . .++++.++++.+++.+..++. +.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~--~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~ 153 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPL--A----DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCC--C----CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHH
Confidence 99999998887 6999999764211 1 134566788888887766654 4699999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEec
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~G 665 (1723)
||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++ .+|||+++|++|+++..|
T Consensus 154 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999987668999999999998 589999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=371.12 Aligned_cols=219 Identities=26% Similarity=0.373 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEccccCCc-cHHHH
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL--IPPTTGDALVFGKNITA-DMDEI 524 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl--~~p~~G~i~i~g~~i~~-~~~~~ 524 (1723)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|+++|.++.. .....
T Consensus 6 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 6 PILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81 (252)
T ss_pred ceEEEEeEEEEeCC----EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence 47999999999953 3699999999999999999999999999999999998 68999999999998754 22222
Q ss_pred h-cceEEEccCCCCCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHcCCC-cccccccC-CCChhHHHHHH
Q 000284 525 R-KGLGVCPQYDILFPELTVREHLEMFAVLK----GV---KEELLESVVAEMVDEVGLA-DKVNIVVR-ALSGGMKRKLS 594 (1723)
Q Consensus 525 r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----g~---~~~~~~~~v~~~l~~~~l~-~~~~~~~~-~LSgGqkqrl~ 594 (1723)
+ ..+++++|++.+++.+|+.+++.+..... +. ...+..+++.++++.+|+. ...++.+. +||||||||++
T Consensus 82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 3 35899999999999999999998754321 11 1223456788999999997 46788887 59999999999
Q ss_pred HHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEEEecCHHHH
Q 000284 595 LGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEEL-GDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 595 lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l-~dri~il~~G~l~~~Gs~~~L 670 (1723)
||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+ |||+++|++|+++..|+++.+
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 9999999999999999999999999999999999986 589999999999999887 899999999999999998744
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=365.23 Aligned_cols=202 Identities=27% Similarity=0.351 Sum_probs=176.5
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
+.+++++++|+ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 23 l~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------- 88 (224)
T cd03220 23 LGILGRKGEVG------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------- 88 (224)
T ss_pred hhhhhhhhhcC------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------
Confidence 66788888885 3669999999999999999999999999999999999999999999999987531
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
..+...+++.+|++||+.+....++....+.++.+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11123345678999999887665555545555667888999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
|||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++|++|++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLK-QG-KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999864 44 58999999999999999999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=367.53 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....++
T Consensus 6 ~~i~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 6 PLLQLQNVGYLAGD----AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred ceEEEeccEEeeCC----ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 46999999999953 469999999999999999999999999999999999999999999999998753 3445678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-cccccccCCCChhHHHHHHHHHHHhcCCcE
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKV 605 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSgGqkqrl~lA~al~~~p~v 605 (1723)
.+||+||++.+++. |++||+.+....++... .+++++++++.+|+. ...++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 82 QVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred ccEEEecccccccc-cHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 89999999998875 99999987654444322 245678999999996 467999999999999999999999999999
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHHHhhcCEEEEEe-CCEEEEecC
Q 000284 606 VILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMA-NGSLKCCGS 666 (1723)
Q Consensus 606 liLDEPtsgLD~~~r~~l~~~l~~~~--~~~tiil~TH~~~e~~~l~dri~il~-~G~l~~~Gs 666 (1723)
+||||||+|||+.+++.+.++|++++ .|+|||++||+++++. .|||+++|+ ++..+.+|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 99999999999999999999999984 3899999999999997 599999995 444444444
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=335.67 Aligned_cols=222 Identities=27% Similarity=0.449 Sum_probs=202.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhcc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 1433 (1723)
++.+++++.+|++. ...+++|+|++|.+||.+.++||+|||||||+++++|+.+|+.|+|.++|+.|.....
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga---- 74 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA---- 74 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----
Confidence 46789999999753 2569999999999999999999999999999999999999999999999999875432
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vl 1513 (1723)
.=|.|+|+++|+|.+|+.||+.|..+++|+++.+..+.+.+.+..+||.+..++.+.+||||||||+.|||||+-+|++|
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 25899999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEE--CCEEEEecChhHHHhhcC
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMV--GGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1514 lLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~--~G~l~~~g~~~~l~~~~~ 1585 (1723)
+||||..+||.-.|+.+.++|.++.++.|+ .++++|||.||+.-+++|+++|+ .||+++.-+++ .-.+|-
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d-f~rR~a 226 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD-FARRYA 226 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC-HHHHhh
Confidence 999999999999999999999998877764 79999999999999999999997 57898877665 333443
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=361.46 Aligned_cols=204 Identities=25% Similarity=0.318 Sum_probs=181.9
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHh
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA 1431 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~ 1431 (1723)
+++|+++|++|+|++ +.+++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 9 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~ 80 (214)
T PRK13543 9 PPLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DR 80 (214)
T ss_pred cceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hh
Confidence 357999999999953 4599999999999999999999999999999999999999999999999988642 33
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
++.+||++|++.+++.+|++||+.+....++.. .++.+.++++.+++.+..++++.+||||||||++||||++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 457999999998988899999998876554432 33456788999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEEC
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1568 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~ 1568 (1723)
+|||||||+|||+.+++.+++.|+++++ +| +|||++||+++++..+|||+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLR-GG-GAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999854 44 5899999999999999999999864
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=378.73 Aligned_cols=220 Identities=24% Similarity=0.398 Sum_probs=191.8
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEccccCCc---
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-----PTTGDALVFGKNITA--- 519 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~-----p~~G~i~i~g~~i~~--- 519 (1723)
..|+++||++.|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 46999999999953 469999999999999999999999999999999999986 699999999998753
Q ss_pred cHHHHhcceEEEccCCCCCCCCCHHHHHHHHHHhc------------CCC-HHHHHHHHHHHHHHcCCC----ccccccc
Q 000284 520 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK------------GVK-EELLESVVAEMVDEVGLA----DKVNIVV 582 (1723)
Q Consensus 520 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~------------g~~-~~~~~~~v~~~l~~~~l~----~~~~~~~ 582 (1723)
+...+|+.+|||||++.+++. ||+||+.+..... +.. ....++++.++++.+++. +..++++
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 198 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA 198 (305)
T ss_pred cHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence 234567889999999988874 9999998764322 121 123356788999999884 4568889
Q ss_pred CCCChhHHHHHHHHHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE-EEEeCCEE
Q 000284 583 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRI-AIMANGSL 661 (1723)
Q Consensus 583 ~~LSgGqkqrl~lA~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri-~il~~G~l 661 (1723)
.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+ ++|++|++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 99999999999999999999999999999999999999999999999977789999999999999999997 46799999
Q ss_pred EEecCHHHHHh
Q 000284 662 KCCGSSLFLKH 672 (1723)
Q Consensus 662 ~~~Gs~~~Lk~ 672 (1723)
++.|++.++.+
T Consensus 279 ~~~g~~~~~~~ 289 (305)
T PRK14264 279 VEYDDTDKIFE 289 (305)
T ss_pred EEeCCHHHHHh
Confidence 99999877643
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=341.45 Aligned_cols=220 Identities=27% Similarity=0.386 Sum_probs=193.6
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
+|+++||+.+-. .+..++++||++++||+.||+||||||||||+|.|+|.+.|++|++.++|.++.. .+.++.
T Consensus 1 mi~a~nls~~~~------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLA------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEee------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 478999999875 3568999999999999999999999999999999999999999999999999876 456667
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh--hHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc--
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY--RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG-- 1508 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~-- 1508 (1723)
++-+++||+..+-...||+|-+.+...-.+...+ +..+.+++.|.+.++...+.+...+|||||||||.+||.|+.
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHcc
Confidence 7789999998775568999999886544322222 445568889999999999999999999999999999999965
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1509 ----DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1509 ----~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
++++|+|||||+.||+..+..++++.++++++ | ..|+.+-||++.+..+||||++|.+||+++.|+|++..
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45699999999999999999999999999854 4 47999999999999999999999999999999998764
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=367.96 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=181.2
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
|+++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 3 IEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred EEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 789999999963 2358999999999999999999999999999999999999999999999998754 3445677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
.+||+||++.+++. |++||+.++.... ...+..+ ...+.++.+ ++....++++.+|||||||||+||+||
T Consensus 78 ~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al 154 (229)
T cd03254 78 MIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAM 154 (229)
T ss_pred hEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHH
Confidence 89999999988775 9999997653211 1111111 112233333 444556677899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~ 1584 (1723)
+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||++++++. |||+++|++|+++..|+.+++.+++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLM-K-G-RTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C-CEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 99999999999999999999999999999984 3 4 589999999999975 9999999999999999988887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=371.78 Aligned_cols=212 Identities=22% Similarity=0.313 Sum_probs=184.8
Q ss_pred EEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhccc
Q 000284 1356 YLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1434 (1723)
Q Consensus 1356 ~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 1434 (1723)
+++||++. .+|+|+||++++||++||+|+||||||||+++|+|+++ .+|+|.++|+++.. .....++.
T Consensus 2 ~~~~l~~~----------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred cccccchh----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhh
Confidence 46777763 17999999999999999999999999999999999985 59999999999865 34455667
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhc------
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG------ 1508 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~------ 1508 (1723)
+||+||++.+++.+|++||+.+.... +.+..+..+++.++++.+++.+..++++.+||||||||++||+||+.
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 99999998888889999999875322 22333345677889999999888899999999999999999999997
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1509 -DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1509 -~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+|++|||||||+|||+.+++.+.++|+++++ +| +|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QG-IAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999999999999999863 44 58999999999999999999999999999999987764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=375.26 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=187.0
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
|+++|+++.|+++ ...+|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....+|+
T Consensus 3 i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 3 MTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred EEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhh
Confidence 7899999999632 3459999999999999999999999999999999999998 79999999999865 4556788
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCC-----------CChhHHHHHHH
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT-----------LSGGNKRKLSV 1502 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgG~kqrl~i 1502 (1723)
+|+||||++.+++ .|++||+..+.. .. .+.+.+.++.+||.+..++.+.. ||||||||++|
T Consensus 78 ~i~~v~q~~~lf~-~tv~~nl~~~~~---~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~L 149 (275)
T cd03289 78 AFGVIPQKVFIFS-GTFRKNLDPYGK---WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCL 149 (275)
T ss_pred hEEEECCCcccch-hhHHHHhhhccC---CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHH
Confidence 9999999999987 599999964421 12 23566788899998888887776 99999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
||||+.+|+||||||||+|||+.+++.+.+.|+++. .+ +|||++||+++++.. ||||++|++|+++..|+++++.+
T Consensus 150 aRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 150 ARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--AD-CTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CC-CEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999999999999999863 34 689999999999875 99999999999999999999977
Q ss_pred h
Q 000284 1583 R 1583 (1723)
Q Consensus 1583 ~ 1583 (1723)
.
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=375.13 Aligned_cols=219 Identities=22% Similarity=0.375 Sum_probs=184.7
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
.+|+++|++|+|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 36899999999963 2469999999999999999999999999999999999999999999999998742 1223
Q ss_pred cceEEEecCCCCC--CCCCHHHHHHHHHH----HcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1433 RLIGYCPQFDALL--EYLTVQEHLELYAR----IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~--~~lTv~e~l~~~~~----~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
+.+||+||++.+. ...++++++.+... ..+.+....++.+.++++.++|.+..++++.+||||||||++|||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 4699999997652 23478888754211 11112233345677889999999889999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
+.+|++|||||||+|||+.+++.+.+.|++++ ++| +|||++||+++++..+|||++++ +|+++..|+++++.
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~-~~g-~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELR-DEG-KTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999999999986 344 58999999999999999999777 89999999988764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=416.59 Aligned_cols=218 Identities=27% Similarity=0.443 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..|+++|++++|+..+ ..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +...+|+
T Consensus 470 g~I~~~nvsf~y~~~~--~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 470 GEIEFENVSFRYGPDD--PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred ceEEEEEEEEEeCCCC--cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 3699999999997643 369999999999999999999999999999999999999999999999999964 8889999
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------CcccccccCCCChhHHHHHHH
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-----------ADKVNIVVRALSGGMKRKLSL 595 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l-----------~~~~~~~~~~LSgGqkqrl~l 595 (1723)
+||||+|++.||.. |++||+.++.. ..+ .+++.++++..|. +.........||||||||++|
T Consensus 548 ~ig~V~Q~~~Lf~g-SI~eNi~l~~p--~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 548 QVGYVLQDPFLFSG-SIRENIALGNP--EAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred heeEEcccchhhcC-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999987 99999998532 112 2344444444433 333345556899999999999
Q ss_pred HHHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhC
Q 000284 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 596 A~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g 675 (1723)
||||+.+|+|||||||||+||+.+.+.+.+.|.+..+|+|+|++||++..+. .||||+||++|+++.+|++++|.+.-|
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQGG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999997 599999999999999999999998833
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=368.43 Aligned_cols=219 Identities=21% Similarity=0.388 Sum_probs=191.1
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCCC--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIRS-- 1426 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~~-- 1426 (1723)
+++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999952 459999999999999999999999999999999999864 489999999998854
Q ss_pred -ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHcCCc----cccCCCCCCCChhHHHHH
Q 000284 1427 -DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVA-EYRMDDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKL 1500 (1723)
Q Consensus 1427 -~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrl 1500 (1723)
.....++++||+||++.+++. |+.||+.+.....+.. ....++++.++++.+++. +..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 234567789999999988874 9999998754444332 234556778889999874 346889999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1501 ~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||+.+|++|||||||+|||+.+++.++++|++++ + + +|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~-~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-D-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-C-CeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 3 4 5899999999999999999999999999999999887
Q ss_pred Hh
Q 000284 1581 KT 1582 (1723)
Q Consensus 1581 ~~ 1582 (1723)
..
T Consensus 233 ~~ 234 (250)
T PRK14266 233 FI 234 (250)
T ss_pred Hh
Confidence 54
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=369.38 Aligned_cols=220 Identities=22% Similarity=0.408 Sum_probs=181.7
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
++++|+++.|++. +++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~---~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSR---PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCC---CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 4689999999642 12469999999999999999999999999999999999999999999999998754 3344567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHH-----HHHHHHHHc--CCccccCCCCCCCChhHHHHHHHHHHH
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrl~iA~al 1506 (1723)
++||+||++.+++ .|++||+.+....+ ...+..+ .+.+.++.+ ++....++++.+|||||||||+||+||
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 7999999988876 69999997642211 1111111 112233333 455566788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1507 ~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~ 1584 (1723)
+.+|++|||||||+|||+.+++.+++.|++++ +| +|||++||++++++ +|||+++|++|++++.|+.+++....
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g-~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM--KG-RTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CC-CEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999999999999984 34 58999999999998 79999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=367.67 Aligned_cols=220 Identities=21% Similarity=0.345 Sum_probs=193.6
Q ss_pred ceEEEEeEEEEcCCCC--------------ccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 000284 1353 AIIYLRNLRKVYPGGK--------------RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~--------------~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~ 1418 (1723)
..|+++||+|.|...+ ....+.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3588999999986531 11345699999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHH
Q 000284 1419 IFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1498 (1723)
Q Consensus 1419 i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq 1498 (1723)
++|. +++++|...+.+.+|+.||+.+.....+...++..+.+.++++.+++.+..++++.+|||||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRA 150 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH
Confidence 9884 4678888777788999999987665556655555566677888899998899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChh
Q 000284 1499 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1499 rl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~ 1578 (1723)
|++||+||+.+|++|||||||+|||+.+++.+++.|.+++ +.| +|||++||+++++..+||||++|++|++++.|+++
T Consensus 151 rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g-~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 151 KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQN-KTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCC-CEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 444 58999999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 000284 1579 HLKTRFGN 1586 (1723)
Q Consensus 1579 ~l~~~~~~ 1586 (1723)
++..+++.
T Consensus 229 ~~~~~~~~ 236 (264)
T PRK13546 229 DVLPKYEA 236 (264)
T ss_pred HHHHHhHH
Confidence 98876544
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=371.64 Aligned_cols=210 Identities=23% Similarity=0.385 Sum_probs=186.0
Q ss_pred EEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcceE
Q 000284 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLG 529 (1723)
Q Consensus 451 ~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ig 529 (1723)
+++||++. .+|+|+||++++||+++|+|+||||||||+++|+|++++ +|+|.++|.++.. .....++.+|
T Consensus 2 ~~~~l~~~--------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 2 QLNDVAVS--------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred cccccchh--------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 46777763 289999999999999999999999999999999999865 9999999998853 3445667799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhc-------C
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG-------D 602 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~-------~ 602 (1723)
|+||++.+++.+|+.||+.++... +.+.++.+++++++++.+||.+..++.+++||||||||++||+||+. +
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~ 151 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPA 151 (248)
T ss_pred EecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCC
Confidence 999999888889999999876322 23344456788999999999988899999999999999999999998 7
Q ss_pred CcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 603 p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||+++|++|+++..|++.++
T Consensus 152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 79999999999999999999999999986 589999999999999999999999999999999987665
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=368.49 Aligned_cols=219 Identities=23% Similarity=0.318 Sum_probs=187.2
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEEcCeeCCCC-hH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE--EYPTDGTAFIFGKDIRSD-PK 1429 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~--~~p~~G~i~i~G~~i~~~-~~ 1429 (1723)
.+|+++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 47999999999953 4599999999999999999999999999999999998 589999999999988653 22
Q ss_pred Hhc-cceEEEecCCCCCCCCCHHHHHHHHHHHc----CCC---hhhHHHHHHHHHHHcCCc-cccCCCCC-CCChhHHHH
Q 000284 1430 AAR-RLIGYCPQFDALLEYLTVQEHLELYARIK----GVA---EYRMDDVVMEKLVEFDLL-KHAKKPSF-TLSGGNKRK 1499 (1723)
Q Consensus 1430 ~~~-~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~---~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqr 1499 (1723)
..+ ..++|+||++.+++.+|+.+++.+..... +.. ..+..+.+.++++.+++. ...++++. .||||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 222 25899999999999999999987643321 111 112345677889999997 46788887 599999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHH-cCEEEEEECCEEEEecChh
Q 000284 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL-CTRIGIMVGGQLRCIGSPQ 1578 (1723)
Q Consensus 1500 l~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l-~drv~im~~G~l~~~g~~~ 1578 (1723)
|+||+||+.+|++|||||||+|||+.+++.++++|++++ ++| +|||++||++++++.+ |||+++|++|+++..|+++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLM-TSE-NSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999999999986 344 5899999999999987 9999999999999999987
Q ss_pred H
Q 000284 1579 H 1579 (1723)
Q Consensus 1579 ~ 1579 (1723)
.
T Consensus 238 ~ 238 (252)
T CHL00131 238 L 238 (252)
T ss_pred h
Confidence 4
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=409.18 Aligned_cols=223 Identities=23% Similarity=0.390 Sum_probs=194.4
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEEc------------
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--YPTDGTAFIF------------ 1420 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~--~p~~G~i~i~------------ 1420 (1723)
|+++|++|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999952 46999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeeCC-------C-C---hHHhccceEEEecC-CCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHH
Q 000284 1421 -----------GKDIR-------S-D---PKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1477 (1723)
Q Consensus 1421 -----------G~~i~-------~-~---~~~~~~~ig~~pQ~-~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~ 1477 (1723)
|.++. . . ....++.+||+||+ +.+++.+|++||+.+.....+.+..+.++++.++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33221 1 1 12346779999997 678888999999987665556655556678889999
Q ss_pred HcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHH
Q 000284 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557 (1723)
Q Consensus 1478 ~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~ 1557 (1723)
.++|.+..++++++|||||||||+||+||+.+|++|||||||+|||+.+++.++++|++++++.| +|||++|||++++.
T Consensus 155 ~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tviivtHd~~~~~ 233 (520)
T TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG-ISMVLTSHWPEVIE 233 (520)
T ss_pred HcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999865444 58999999999999
Q ss_pred HHcCEEEEEECCEEEEecChhHHHhhc
Q 000284 1558 ALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1558 ~l~drv~im~~G~l~~~g~~~~l~~~~ 1584 (1723)
.+||||++|++|++++.|+++++..++
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999999999999999999988876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=365.54 Aligned_cols=206 Identities=32% Similarity=0.511 Sum_probs=175.8
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhcc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~ 1433 (1723)
++++|++|.|+++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999631 2469999999999999999999999999999999999999999999999998754 3344567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCC-----------CCCCChhHHHHHHH
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP-----------SFTLSGGNKRKLSV 1502 (1723)
Q Consensus 1434 ~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~kqrl~i 1502 (1723)
.+||+||++.+++ .|+.||+.+... .. ..+.+.++++.+++.+..++. +.+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~l 151 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAP---LA---DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVAL 151 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCC---CC---CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHH
Confidence 8999999998876 699999876321 11 123455677888887665554 46999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEec
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g 1575 (1723)
||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++ .+|||+++|++|++++.|
T Consensus 152 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-G-D-KTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999985 3 3 5899999999987 599999999999997654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=407.31 Aligned_cols=227 Identities=19% Similarity=0.338 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCCC
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRSD 1427 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~~ 1427 (1723)
++|+++|++++|+++. +.+.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 4799999999996311 124699999999999999999999999999999999999987 799999999998542
Q ss_pred -hH---Hhc-cceEEEecCCC--CCCCCCHHHHHHHHHHH-cCCChhhHHHHHHHHHHHcCCcc---ccCCCCCCCChhH
Q 000284 1428 -PK---AAR-RLIGYCPQFDA--LLEYLTVQEHLELYARI-KGVAEYRMDDVVMEKLVEFDLLK---HAKKPSFTLSGGN 1496 (1723)
Q Consensus 1428 -~~---~~~-~~ig~~pQ~~~--l~~~lTv~e~l~~~~~~-~g~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~ 1496 (1723)
.. ..+ ++|||+||++. +++.+|++|++.+.... .+.+..+..+++.++++.++|.+ ..++++.+|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 21 223 57999999964 66778999998765433 35555556677889999999975 3689999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1497 kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
||||+|||||+.+|++|||||||+|||+.+++.++++|++++++.| .|||++|||++++..+||||++|++|++++.|+
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN-MGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999865434 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000284 1577 PQHLKT 1582 (1723)
Q Consensus 1577 ~~~l~~ 1582 (1723)
++++.+
T Consensus 241 ~~~~~~ 246 (529)
T PRK15134 241 AATLFS 246 (529)
T ss_pred HHHHhh
Confidence 988753
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=369.53 Aligned_cols=221 Identities=25% Similarity=0.386 Sum_probs=190.8
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEEcCeeCCC
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP-----TDGTAFIFGKDIRS 1426 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p-----~~G~i~i~G~~i~~ 1426 (1723)
...|+++|++|+|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 356999999999963 4699999999999999999999999999999999999975 79999999987631
Q ss_pred -----ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChh-hHHHHHHHHHHHcCCc----cccCCCCCCCChhH
Q 000284 1427 -----DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY-RMDDVVMEKLVEFDLL----KHAKKPSFTLSGGN 1496 (1723)
Q Consensus 1427 -----~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~-~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~ 1496 (1723)
.....++.+||+||++.+++. |++||+.+.....+.... ..++.+.++++.+++. +..++++.+|||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHH
Confidence 233567789999999988875 999999876554454332 2345677788888763 45688999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1497 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1497 kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|||++|||||+.+|++|||||||+|||+.+++.+++.|++++ + + +|||++||+++++..+|||+++|++|++++.|+
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~-~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-N-K-VTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-C-CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 3 3 589999999999999999999999999999999
Q ss_pred hhHHHh
Q 000284 1577 PQHLKT 1582 (1723)
Q Consensus 1577 ~~~l~~ 1582 (1723)
.+++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 988753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.90 Aligned_cols=211 Identities=25% Similarity=0.442 Sum_probs=178.6
Q ss_pred eEEEEeEEEEcCCCCccC-ccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEc--Ce--eCCC-C
Q 000284 1354 IIYLRNLRKVYPGGKRSD-AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF--GK--DIRS-D 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~-~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~--G~--~i~~-~ 1427 (1723)
+|+++|++|.|+..+..+ .+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 478999999996321101 2469999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred hH---H-hccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCcc-ccCCCCCCCChhHHHHHHH
Q 000284 1428 PK---A-ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSV 1502 (1723)
Q Consensus 1428 ~~---~-~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrl~i 1502 (1723)
.. . .++++||+||++.+++.+|++||+.+.....+.......+++.++++.+++.+ ..++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 21 1 24579999999999999999999987555445544445567788999999976 4588999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000284 1503 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566 (1723)
Q Consensus 1503 A~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im 1566 (1723)
|+||+.+|++|||||||+|||+.+++.+.+.|++++ ++| +|||++||++++++.+|||++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAK-ARG-AALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcC-CEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999985 344 68999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=373.85 Aligned_cols=217 Identities=21% Similarity=0.344 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
..++++||+|.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.
T Consensus 5 ~~l~~~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNL 79 (272)
T ss_pred ceEEEEeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccce
Confidence 36999999999952 2469999999999999999999999999999999999999999999999988742 112346
Q ss_pred eEEEccCCCCC--CCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 528 LGVCPQYDILF--PELTVREHLEMFAV----LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 528 ig~~~Q~~~l~--~~lTv~e~l~~~~~----~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
+||+||++.+. ...+++|++.+... ..+......+++++++++.+||.+..++++.+||||||||++|||||+.
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999998652 23478888865311 1111223345678889999999988899999999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHH
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~L 670 (1723)
+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||++++ +|+++..|++.++
T Consensus 160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999999999999999999999999986 5899999999999999999999777 8999999987665
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=362.79 Aligned_cols=207 Identities=24% Similarity=0.419 Sum_probs=180.2
Q ss_pred EEEEeEEEEecCcC--C-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcc--c--cCCc-cH
Q 000284 450 IQIRKLHKVYATKR--G-NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG--K--NITA-DM 521 (1723)
Q Consensus 450 i~i~~l~k~y~~~~--~-~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g--~--~i~~-~~ 521 (1723)
|+++||+|.|+..+ + ++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| . ++.. +.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 78999999996421 1 24699999999999999999999999999999999999999999999984 3 4422 11
Q ss_pred H---HH-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCChhHHHHHHHH
Q 000284 522 D---EI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLG 596 (1723)
Q Consensus 522 ~---~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~LSgGqkqrl~lA 596 (1723)
. +. ++.+||+||++.+++.+||.|++.+.....+...+..++++.++++.+|+.+. .++++.+||||||||++||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 1 22 46799999999999999999999876554565555567788999999999864 5889999999999999999
Q ss_pred HHHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEE
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 656 (1723)
Q Consensus 597 ~al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il 656 (1723)
+||+.+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||++.+
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999986 4899999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=404.70 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHH
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKA 1430 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~--~~~ 1430 (1723)
++|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++... ...
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 47999999999953 4599999999999999999999999999999999999999999999999998542 234
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHHH--HcC-CChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHh
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYAR--IKG-VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI 1507 (1723)
Q Consensus 1431 ~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~--~~g-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~ 1507 (1723)
.+++|||+||++.+++.+|++||+.+... ..+ .+..+.++++.++++.+++.+..++++.+|||||||||+||+||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999987432 122 233445567888999999988889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecCh
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1508 ~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~ 1577 (1723)
.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++|++|+++..++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g-~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELR-AEG-RVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999986 444 5899999999999999999999999999877653
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=385.22 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
++++++||++.|+++. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~~---~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE---YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-------- 88 (549)
T ss_pred ceeEEEEEEEecCCCc---cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--------
Confidence 5789999999996531 24699999999999999999999999999999999999999999999999752
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCE
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1512 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~v 1512 (1723)
++++...+.+.+|++||+.+.....+.+..+..+.+.++++.+++.+..++++++||||||||++|||||+.+|++
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 1223345667789999998866555665555566778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhcC
Q 000284 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1513 llLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~~ 1585 (1723)
|||||||+|||+.+++.+++.|++++ ++| +|||++||++++++.+|||+++|++|++++.|+++++..++.
T Consensus 165 LLLDEPTsgLD~~sr~~LlelL~el~-~~G-~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFK-EQG-KTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 99999999999999999999999985 444 589999999999999999999999999999999998877654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=389.67 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=192.4
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
.++.+||++.|+.+ +++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+.+. +....|++
T Consensus 320 ei~~~~l~~~y~~g---~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 320 EISLENLSFRYPDG---KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred eeeecceEEecCCC---CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 45556999999753 379999999999999999999999999999999999999999999999999865 66788999
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCccc------cccc----CCCChhHHHHHHHHH
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV------NIVV----RALSGGMKRKLSLGI 597 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~------~~~~----~~LSgGqkqrl~lA~ 597 (1723)
+++++|+|.+|+. |++||+.++.. +..++++.++++..|+.+.. |..+ ..|||||+|||++||
T Consensus 397 i~~v~Q~p~lf~g-TireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 397 ISWVSQNPYLFAG-TIRENILLARP------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred eeeeCCCCccccc-cHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 9999999999987 99999998631 22346677777777765433 3333 359999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhhCCc
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVG 677 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~g~g 677 (1723)
||+.+++++|||||||+||.++.+.+.+.|.++.+++|+|++||++..+.. +|||++|++|+++|.|++.+|.++-|..
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 999999999999999999999999999999999999999999999999976 9999999999999999999997765543
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=374.06 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=190.1
Q ss_pred CcceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEEcCeeCC
Q 000284 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-----PTDGTAFIFGKDIR 1425 (1723)
Q Consensus 1351 ~~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~-----p~~G~i~i~G~~i~ 1425 (1723)
.+.+|+++||+++|++ +.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4568999999999963 459999999999999999999999999999999999986 68999999999885
Q ss_pred C---ChHHhccceEEEecCCCCCCCCCHHHHHHHHHHHc------------CCCh-hhHHHHHHHHHHHcCCc----ccc
Q 000284 1426 S---DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK------------GVAE-YRMDDVVMEKLVEFDLL----KHA 1485 (1723)
Q Consensus 1426 ~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~------------g~~~-~~~~~~~~~~l~~~~l~----~~~ 1485 (1723)
. .....++++||+||++.+++ .|++||+.+..... +... ...++.+.++++.+++. +..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 23456778999999988887 59999998754322 1111 22345677888888874 456
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEE-E
Q 000284 1486 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRI-G 1564 (1723)
Q Consensus 1486 ~~~~~~LSgG~kqrl~iA~al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv-~ 1564 (1723)
++++.+||||||||++||+||+.+|+||||||||+|||+.+++.++++|+++++ + .|||++||+++++..+|||+ +
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--E-YTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEEcCHHHHHHhcCEEEE
Confidence 889999999999999999999999999999999999999999999999999853 3 58999999999999999997 4
Q ss_pred EEECCEEEEecChhHHHh
Q 000284 1565 IMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1565 im~~G~l~~~g~~~~l~~ 1582 (1723)
+|++|++++.|+++++.+
T Consensus 272 ~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 272 FLTGGELVEYDDTDKIFE 289 (305)
T ss_pred EecCCEEEEeCCHHHHHh
Confidence 679999999999988754
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=366.98 Aligned_cols=204 Identities=25% Similarity=0.451 Sum_probs=178.9
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
++|+++||+|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 37899999999963 4599999999999999999999999999999999999999999999986 2
Q ss_pred cceEEEecCCCCCCC--CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1433 RLIGYCPQFDALLEY--LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~--lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
..+||+||++.+++. .|+.+++.+. .+.. .+++.++++.+++.+..++++.+|||||||||+||+||+.+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 369999999877765 3777776432 1221 245678899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHH
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~ 1581 (1723)
++|||||||+|||+.+++.+++.|++++++.| +|||++||+++++..+||||++|+ |++++.|+++++.
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELD-CAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999999999999864434 589999999999999999999996 5799999988774
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=358.46 Aligned_cols=197 Identities=27% Similarity=0.360 Sum_probs=178.4
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcceE
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ig 529 (1723)
++++||++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.......++++|
T Consensus 1 l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG----RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC----ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE
Confidence 468999999953 4699999999999999999999999999999999999999999999999987544456778999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEeecc
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vliLD 609 (1723)
|+||++.+++.+|++||+.++... ..+++++++++.+|+.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999899999999875321 12457889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEE
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIM 656 (1723)
Q Consensus 610 EPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il 656 (1723)
|||+|||+.++++++++|++++ +|+|+|++||+.++....|||++.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999885 5899999999999999999999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=393.66 Aligned_cols=223 Identities=24% Similarity=0.403 Sum_probs=188.3
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHh
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~ 1431 (1723)
..++++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.|+.. +...+
T Consensus 470 g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 470 GEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 359999999999753 3469999999999999999999999999999999999999999999999999977 77889
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHH-----HHHHHHHc--CCccccCCCCCCCChhHHHHHHHHH
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV-----VMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1432 ~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrl~iA~ 1504 (1723)
|++||||||++.+|. -|++||+.+... ..+.+++.+. +.+.+..+ |...........||||||||++|||
T Consensus 546 R~~ig~V~Q~~~Lf~-gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 546 RRQVGYVLQDPFLFS-GSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HhheeEEcccchhhc-CcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 999999999999886 599999987432 1221222111 11223322 3334445677889999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHhhc
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1505 al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~~~ 1584 (1723)
||+++|+|||||||||+||+.+.+.+.+.|.++. +| +|+|++||++..+.. ||||++|++|+++++|+.+++.++.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~-~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell~~~ 698 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QG-RTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQG 698 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cC-CeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHHHhc
Confidence 9999999999999999999999999999999984 34 689999999998875 9999999999999999999999885
Q ss_pred CC
Q 000284 1585 GN 1586 (1723)
Q Consensus 1585 ~~ 1586 (1723)
|.
T Consensus 699 g~ 700 (709)
T COG2274 699 GL 700 (709)
T ss_pred Ch
Confidence 43
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=366.97 Aligned_cols=209 Identities=24% Similarity=0.420 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~ 526 (1723)
..++++|+++.|+++. ++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 10 ~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 10 GIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred ceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5799999999996532 2469999999999999999999999999999999999999999999999998753 3345677
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHH
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL-----ESVVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIAL 599 (1723)
Q Consensus 527 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~-----~~~v~~~l~~~--~l~~~~~~~~~~LSgGqkqrl~lA~al 599 (1723)
.+|||||++.+++ .|++||+.+.... ....+. +..++++++.+ |+.+..++++.+||||||||++||+||
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 8999999998886 5999999864321 111111 12356788888 788888999999999999999999999
Q ss_pred hcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661 (1723)
Q Consensus 600 ~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l 661 (1723)
+.+|+++||||||+|||+.+++.++++|+++++++|||++||++++++. ||||++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 9999999999999999999999999999998777999999999999975 999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=336.42 Aligned_cols=227 Identities=28% Similarity=0.410 Sum_probs=198.0
Q ss_pred eEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcc
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~ 527 (1723)
+|+.+||+.+-.+ +..++++||++++||+.+|+|||||||||||+.|+|.+.|++|++.++|.++.. ...+..++
T Consensus 1 mi~a~nls~~~~G----r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ 76 (259)
T COG4559 1 MIRAENLSYSLAG----RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76 (259)
T ss_pred CeeeeeeEEEeec----ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHH
Confidence 4788999988854 469999999999999999999999999999999999999999999999999864 45566677
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhc----
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGV--KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG---- 601 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~--~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~---- 601 (1723)
-++.||+..+-...||.|-+.++..-.+. ...+.++.++++|..+++.....+...+|||||||||.+||.|+.
T Consensus 77 raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred hhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 89999999874456999999998654432 323445568899999999999999999999999999999999975
Q ss_pred --CCcEeeccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHH------HHh
Q 000284 602 --DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLF------LKH 672 (1723)
Q Consensus 602 --~p~vliLDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~------Lk~ 672 (1723)
++++|+||||||+||......+.++.+++. +|..|+.+-||++.+..+||||++|++||++++|+|++ |.+
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~ 236 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLER 236 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHH
Confidence 557999999999999999999999999985 68899999999999999999999999999999999864 556
Q ss_pred hhCCcEE
Q 000284 673 QYGVGYT 679 (1723)
Q Consensus 673 ~~g~gy~ 679 (1723)
-||..-.
T Consensus 237 vyg~~~~ 243 (259)
T COG4559 237 VYGADIR 243 (259)
T ss_pred HhCCcee
Confidence 6765443
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.28 Aligned_cols=206 Identities=25% Similarity=0.427 Sum_probs=178.6
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
++++|+++.|+.. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....++.+
T Consensus 3 l~~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPN--LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred EEEEEEEEecCCC--CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 7899999999642 2469999999999999999999999999999999999999999999999998753 445567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcc-----------cccccCCCChhHHHHHHHHH
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-----------VNIVVRALSGGMKRKLSLGI 597 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~-----------~~~~~~~LSgGqkqrl~lA~ 597 (1723)
||+||++.+++ .|++||+.++.. .. .+++.+.++.+++.+. .++.+.+||||||||++|||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence 99999998876 599999975421 22 2345555666655443 35688999999999999999
Q ss_pred HHhcCCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecC
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 598 al~~~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs 666 (1723)
||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++.. |||+++|++|+++..|+
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999998778999999999999986 99999999999988775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=365.65 Aligned_cols=216 Identities=23% Similarity=0.397 Sum_probs=182.9
Q ss_pred EEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCc-cHHHHhcce
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~-~~~~~r~~i 528 (1723)
++++|+++.|++ .+.+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. +....|+.+
T Consensus 1 l~~~~l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 468999999953 2359999999999999999999999999999999999999999999999998753 445567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCChhHHHHHHHHHHHhc
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 529 g~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSgGqkqrl~lA~al~~ 601 (1723)
||+||++.+++ .|+.||+.+.... .+.....+ .+.+.++.+ ++....++++.+||||||||++||+||+.
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998886 6999999875321 12222111 123344444 55556677889999999999999999999
Q ss_pred CCcEeeccCCCCCCCHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHh
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 602 ~p~vliLDEPtsgLD~~~r~~l~~~l~~~~~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~ 672 (1723)
+|+++||||||+|||+.+++.++++|+++++|+|||++||+++++.. |||+++|++|+++..|+..++..
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999998778999999999999975 99999999999999999877765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=385.05 Aligned_cols=217 Identities=27% Similarity=0.384 Sum_probs=196.4
Q ss_pred cceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChH-
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK- 1429 (1723)
Q Consensus 1352 ~~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~- 1429 (1723)
.+.++++|++|+|++ .+||+++||+|++|||+||+|.||||||||+|+|+|.++|++|+|.++|+.+.. .+.
T Consensus 6 ~~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 357999999999964 679999999999999999999999999999999999999999999999998863 444
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHc----CCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIK----GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~----g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
.....|+.+.|+.+|.|+|||.||+.+..... -++++...+++.++|+++++....+.++++||+||||-|.||||
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence 45567999999999999999999997654322 25667788889999999999655999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecC
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~ 1576 (1723)
|..+++||||||||+.|++...+.+.++|++++ ++| .+||++||.|+|+.++||||.||.+|+.++.++
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~G-v~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQG-VAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCC-CEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999996 455 689999999999999999999999999998877
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=404.08 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=190.9
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEEcCeeCCCC-hH-
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP--TDGTAFIFGKDIRSD-PK- 1429 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p--~~G~i~i~G~~i~~~-~~- 1429 (1723)
+|+++||+|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 1 ~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 1 LLEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred CEEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 3789999999953 4599999999999999999999999999999999999987 799999999998652 22
Q ss_pred HhccceEEEecCCCCCCCCCHHHHHHHHHHHc--C--CChhhHHHHHHHHHHHcCCcccc-CCCCCCCChhHHHHHHHHH
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIK--G--VAEYRMDDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1430 ~~~~~ig~~pQ~~~l~~~lTv~e~l~~~~~~~--g--~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~kqrl~iA~ 1504 (1723)
..+++|||+||++.+++.+|++||+.+..... + ...++..+++.++++.+++.+.. ++++++|||||||||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 24567999999998999999999998754322 1 23334456788899999998654 6789999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1505 al~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
||+.+|++|||||||+|||+.+++.+++.|++++ ++| +|||++|||++++..+||||++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g-~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHG-VACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999986 444 5899999999999999999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=404.08 Aligned_cols=216 Identities=25% Similarity=0.359 Sum_probs=189.8
Q ss_pred EEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCC--hHHhccc
Q 000284 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD--PKAARRL 1434 (1723)
Q Consensus 1357 v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~--~~~~~~~ 1434 (1723)
++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....+++
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999953 4699999999999999999999999999999999999999999999999998642 2334678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHH-HcCC--ChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCC
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYAR-IKGV--AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPP 1511 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~-~~g~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~ 1511 (1723)
+||+||++.+++.+||+||+.+... ..+. +..+..+++.++++.+++....++++.+|||||||||+||+||+.+|+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ 154 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999999988889999999976432 1221 233345678889999999888899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1512 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1512 vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
+|||||||+|||+.+++.+++.|++++ +.| .|||++|||++++..+|||+++|++|+++..|+++++
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g-~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLK-ERG-CGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCC-CEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999999986 444 5899999999999999999999999999999987664
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=358.86 Aligned_cols=192 Identities=28% Similarity=0.385 Sum_probs=157.4
Q ss_pred ceEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhc
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432 (1723)
Q Consensus 1353 ~~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1432 (1723)
+++-+.++++.|++ .++.+++++|.|.--..++|+||||.|||||+++|.|-+.|+.|+.+- ..|
T Consensus 585 PvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK----------nhr 649 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK----------NHR 649 (807)
T ss_pred CeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc----------cce
Confidence 57889999999974 567899999999999999999999999999999999999999998532 235
Q ss_pred cceEEEecCC--CCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccC-CCCCCCChhHHHHHHHHHHHhcC
Q 000284 1433 RLIGYCPQFD--ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1433 ~~ig~~pQ~~--~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~kqrl~iA~al~~~ 1509 (1723)
-+||+.-|+. +|-...|..|.| .+...++.. .++..|..+||..+++ -++..||||||-||++|-.-++.
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyL---qr~FNlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYL---QRKFNLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHH---HHhcCCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCC
Confidence 5799999974 455556766655 344456543 3557799999987776 57899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEE
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571 (1723)
Q Consensus 1510 p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l 1571 (1723)
|+||||||||+.||..+...+-++|.++. | .||++|||-..+..---.++|+.+..|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~---G--gVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN---G--GVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc---C--cEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999972 3 599999997776554334556555433
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=356.07 Aligned_cols=198 Identities=26% Similarity=0.373 Sum_probs=176.9
Q ss_pred EEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCCChHHhccc
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 1434 (1723)
|+++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.......+++
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999953 46899999999999999999999999999999999999999999999999876544556788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 ig~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p~vll 1514 (1723)
+||+||++.+++.+|++||+.++.... .++++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998888899999998753211 23567788999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEE
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566 (1723)
Q Consensus 1515 LDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im 1566 (1723)
|||||+|||+.+++.+++.|+++++ +| .|||++||+.++....|+|++.+
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCA-RG-GMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999853 44 58999999999999999999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=340.23 Aligned_cols=222 Identities=24% Similarity=0.353 Sum_probs=205.0
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeCCC-ChHHhc
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~ 1432 (1723)
|++++|++|+|+ .+.+++++|++|++|.+++|+||||||||||+.|++.++++++|+|+++|.++.. +.+.+.
T Consensus 1 MI~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 578999999995 4789999999999999999999999999999999999999999999999999976 566778
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHH--HHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHHHhcCC
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYA--RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDP 1510 (1723)
Q Consensus 1433 ~~ig~~pQ~~~l~~~lTv~e~l~~~~--~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~al~~~p 1510 (1723)
++++.+-|+..+-..+||+|-+.|.. ..+|....+.+..++++++.++|++..++...+||||||||.-||+.++++.
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 88999999999888999999887632 2346666777888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHHHh
Q 000284 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1511 ~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l~~ 1582 (1723)
+.++||||.++||.+....+++.+++++++-| +||+++-||.+++..++|.|+-|++|+++..|+|+++.+
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~-KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELG-KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhC-CeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999987776 589999999999999999999999999999999998764
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=322.34 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=200.5
Q ss_pred eEEEEeEEEEcCCCCccCccceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEcCeeC--CCC----
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI--RSD---- 1427 (1723)
Q Consensus 1354 ~l~v~~l~k~y~~~~~~~~~~al~~vs~~v~~Ge~~gllG~NGaGKSTll~~l~G~~~p~~G~i~i~G~~i--~~~---- 1427 (1723)
.|+++|+.+.||. ..+|-||+|+.++||.+.|+||+|||||||+|.|.=+..|.+|+..|.|... .+.
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 4789999999963 5699999999999999999999999999999999999999999999987643 322
Q ss_pred -hHHhccceEEEecCCCCCCCCCHHHHHHH-HHHHcCCChhhHHHHHHHHHHHcCCccccCCCCCCCChhHHHHHHHHHH
Q 000284 1428 -PKAARRLIGYCPQFDALLEYLTVQEHLEL-YARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1428 -~~~~~~~ig~~pQ~~~l~~~lTv~e~l~~-~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrl~iA~a 1505 (1723)
..++|+.+|+|+|...|||.+||.|||.- ..+..|+++++.+.++.++|+++.|.+++|+.+-.|||||+|||+||||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiara 155 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHH
Confidence 24578999999999999999999999854 5677899999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEecCCHHHHHHHcCEEEEEECCEEEEecChhHH
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580 (1723)
Q Consensus 1506 l~~~p~vllLDEPT~gLD~~~~~~l~~~l~~l~~~~g~~tiiltsH~~~e~~~l~drv~im~~G~l~~~g~~~~l 1580 (1723)
|+.+|++|++||||++|||+-...+.++|++++ +.| .|=+++||..+.+.+.+.||+.|++|+|++.|+....
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~-~tg-itqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETG-ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcC-ceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 999999999999999999999999999999996 444 6889999999999999999999999999999987654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=384.05 Aligned_cols=214 Identities=21% Similarity=0.351 Sum_probs=190.9
Q ss_pred ceEEEEeEEEEecCcCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEccccCCccHHHHhcc
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~k~y~~~~~~~~al~~~sl~i~~Gei~~llG~NGaGKSTll~~l~Gl~~p~~G~i~i~g~~i~~~~~~~r~~ 527 (1723)
+.++++||++.|+++. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 5799999999996532 24699999999999999999999999999999999999999999999999641
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCcccccccCCCChhHHHHHHHHHHHhcCCcEee
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 ig~~~Q~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkqrl~lA~al~~~p~vli 607 (1723)
++++.+.+.+.+|++||+.+.....+.+.++..+++.++++.+++.+..++++++||||||||++|||||+.+|++||
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL 166 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV 166 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 223344567789999999887665666666667778899999999998999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEEEecCHHHHHhhh
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 608 LDEPtsgLD~~~r~~l~~~l~~~~-~~~tiil~TH~~~e~~~l~dri~il~~G~l~~~Gs~~~Lk~~~ 674 (1723)
|||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++.+.|++.++...+
T Consensus 167 LDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 167 IDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999986 5899999999999999999999999999999999998886654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1723 | ||||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-26 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-26 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-23 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-21 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-21 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-21 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-20 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-20 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-20 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-20 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-19 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-20 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-16 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-18 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-17 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-11 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-16 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-15 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-15 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-14 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-14 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-14 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-14 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-13 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-13 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-13 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-12 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-12 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-12 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-11 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-11 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-11 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-11 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-11 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 6e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-08 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 9e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-09 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-09 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-09 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 8e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-08 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-07 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 7e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 7e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 9e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-04 |
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 267 bits (686), Expect = 1e-81
Identities = 72/257 (28%), Positives = 132/257 (51%), Gaps = 14/257 (5%)
Query: 1340 VERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGK 1399
+ +++ + +++LRK K + ++F ++ GE FG +G NGAGK
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGK 54
Query: 1400 TTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYAR 1459
TTTL +IS P+ G +FGK++ +P R+LI Y P+ + E+L A
Sbjct: 55 TTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114
Query: 1460 IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPS 1519
+ ++++V L + K T S G RKL +A A++ +P + ILDEP+
Sbjct: 115 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174
Query: 1520 TGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQH 1579
+G+D + R + +++ + S ++G T +++++H+M E + LC RI ++ G + G+ +
Sbjct: 175 SGLDVLNAREVRKILKQAS-QEGLT-ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232
Query: 1580 LKTRFGN------FLEL 1590
LK R+ F E+
Sbjct: 233 LKERYKAQNIEEVFEEV 249
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 7e-80
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ ++ L K G + + + E +I L+G NGAGK+TT+ ++ LI P++G
Sbjct: 16 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
VFGKN+ + E+RK + P+ + + E+L A +E +V
Sbjct: 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ GL +K+ V S GM RKL + AL+ + ++ ILDEPTSG+D + R +++K+
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 630 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
+ G IL+++H+M E E L DRIA++ NG++ G+ LK +Y
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-66
Identities = 45/214 (21%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++IR L Y + + +T+ + ++ G NG GK+T + + + P G+
Sbjct: 11 LEIRDLSVGYDKP-----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G IT +++ + P+ I+ +++V ++L+ A L GVK ++ + + +
Sbjct: 66 IIYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDAL 119
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ V + D + LS G R++ L L+ ++++ +LD+P +D S + I +
Sbjct: 120 ESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 178
Query: 630 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
I K G +I+ + + D + S
Sbjct: 179 ILKEKGIVIISSREELSYC----DVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 2e-64
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 23/221 (10%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+ + +R+L Y K + +T +++ G F G NG GKTT L IS P
Sbjct: 9 SKLEIRDLSVGY-------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 61
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGV--AEYRMDD 1470
G G I + I + P+ + ++V+++L+ A + GV + + D
Sbjct: 62 LKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD 117
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
+ + VE + KK LS G R++ +A ++ + I +LD+P +D +K +
Sbjct: 118 AL--ESVE---VLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ I + +G +I + ++ C +
Sbjct: 173 LKSILEILKEKGIV-IISSREELSY----CDVNENLHKYST 208
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 9e-50
Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 23/246 (9%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+ +I L + ++ G K + +++ + G+ + G NGAGKTT L++++ E
Sbjct: 18 SHMLIQLDQIGRMKQG------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71
Query: 1411 YPTDGTAFIFGKDIRS---DPKAARRLIGYCPQ--FDALLEYLTVQE--------HLELY 1457
T GT +FGK + R+ IG+ + E V + + +Y
Sbjct: 72 PATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVY 131
Query: 1458 ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
I + L + A++ LS G K+++ +A A++G P ++ILDE
Sbjct: 132 QDIDDEIRNE----AHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
P+ G+D IA+ + ++ LS A+I TH + E A ++I ++ GQ G+
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 1578 QHLKTR 1583
+ + T
Sbjct: 248 EDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-43
Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 30/236 (12%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
IQ+ ++ ++ K + + + + L G NGAGK+T +++L P T+G
Sbjct: 22 IQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 510 ALVFGK---NITADMDEIRKGLGVCPQ---YDILFPELTVREHLEMFAVLKG-------- 555
+FGK + + +R+ +G E V + V+ G
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE-RVID-----VVISGAFKSIGVY 131
Query: 556 --VKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
+ +E+ +++ VG++ K + LS G K+++ + AL+G +V+ILDEP +
Sbjct: 132 QDIDDEIRN-EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 614 GMDPYSMRLTWQLIKKI---KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
G+D + ++ + ++ TH ++E +I ++ +G G+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-43
Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 17/249 (6%)
Query: 1349 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1408
S+++ I+ + L Y G A+ + +++ GE LG NG GK+T +G
Sbjct: 2 SLEDYILKVEELNYNYSDGTH-----ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
Query: 1409 EEYPTDGTAFIFGKDIRSDPKA---ARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVA 1464
P+ G K I K R IG Q D L +V + + A +
Sbjct: 57 ILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP 116
Query: 1465 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGM 1522
E + V L + KP+ LS G K+++++A + M +P ++ILDEP+ G+
Sbjct: 117 EDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGL 174
Query: 1523 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582
DP+ + +++ + G T +I+ TH ++ C + +M G++ G+P+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV-- 231
Query: 1583 RFGNFLELE 1591
F +
Sbjct: 232 -FAEKEVIR 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 5e-40
Identities = 55/225 (24%), Positives = 112/225 (49%), Gaps = 13/225 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ +L+ Y+ A+ + + + ++ A+LG NG GKST G++ P++G
Sbjct: 8 LKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 510 ALVFGKNITAD---MDEIRKGLGVCPQY--DILFPELTVREHLEMFAVL-KGVKEELLES 563
L K I + ++R+ +G+ Q + LF +V + + F + + E+ +
Sbjct: 65 ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDV-SFGAVNMKLPEDEIRK 122
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
V + G+ + LS G K+++++ L+ + KV+ILDEPT+G+DP +
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 624 WQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+L+ +++K G I++ TH +D D + +M G + G+
Sbjct: 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 6e-42
Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 27/261 (10%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L+N+ G + ++ ++ V GE LG NG+GKTT L ISG P
Sbjct: 1 MIQLKNVGITLSGK--GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY 56
Query: 1414 DGTAFIFGKDIRSDPKAARRLIGYCPQ-FDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G FI G ++R R I Y +A +TV + + LY +KG+
Sbjct: 57 SGNIFINGMEVRK----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL----F 108
Query: 1473 MEKLVEFDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
+E L L + ++ + LS G + ++A+ P IV LDEP +D + +
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM-VGGQLRCIGSPQHL-------KTR 1583
I GK IL TH ++ VG +L+ S L R
Sbjct: 169 RYIKEY----GKE-GILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223
Query: 1584 FGNFLELEVKPTEVSSVDLED 1604
L L++ +VS V +
Sbjct: 224 NDALLVLDIMDKKVSIVKGDL 244
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 14/212 (6%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
IQ++ + + K ++ ++ L + + + +LG NG+GK+T + + GL+ P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFP-ELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ G + +IR + + +TV + + ++ LKG+ +L EM
Sbjct: 60 IFINGMEVR----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL----FLEM 111
Query: 569 VDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 627
+ + L +++ + LS G + +AL ++V LDEP +D + + I
Sbjct: 112 LKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171
Query: 628 KKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
K+ K +L TH +D + A G
Sbjct: 172 KEYGKE--GILVTHELDMLNLYKEYKAYFLVG 201
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 5e-39
Identities = 60/225 (26%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 450 IQIRKLHKVYATKRGNCC-AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
I++ + ++ A+ ++ L + E + L + G+ G+GKST + ++ GLI PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 509 DALVFGKNITADMDEIRKGLGVCPQY--DILFPELTVREHLEMFAVL-KGVKEELLESVV 565
D L G+ EIR+ +G+ QY D F V + + FAV + + V
Sbjct: 63 DVLYDGERK--KGYEIRRNIGIAFQYPEDQFF-AERVFDEV-AFAVKNFYPDRDPVPL-V 117
Query: 566 AEMVDEVGLADKVNIVVRA---LSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ ++ VGL D + R LSGG KR++++ ++ + ++ILDEP G+D
Sbjct: 118 KKAMEFVGL-DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 623 TWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
++++K K G+ ++L +H ++ DR+ ++ G G+
Sbjct: 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-38
Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 22/278 (7%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + N+ ++ G K A+ +++ + GEC G G+GK+T L +++G PT
Sbjct: 3 IEVVNVSHIFHRG-TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G G+ RR IG Q+ + V + + + +V
Sbjct: 62 GDVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVK 118
Query: 1474 E--KLVEFDLLKHAKKPSFTLSGGNKRKLSVA--IAMIGDPPIVILDEPSTGMDPIAKRF 1529
+ + V D + F LSGG KR++++A I +P I+ILDEP G+D K
Sbjct: 119 KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTD 176
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLE 1589
+ ++ + GKT VIL +H + R+ ++ G+ G+ +
Sbjct: 177 LLRIVEKWK-TLGKT-VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF---LEKYDP 231
Query: 1590 LEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDL 1627
+ + +++ + LL+ +
Sbjct: 232 RFFTSK------MLVMRRLVLKGEDPFSMSDDELLERV 263
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 14/276 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 510 ALVFGKNITA----DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
LV G+ +T ++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIA--LIGDSKVVILDEPTSGMDPYSMRLT 623
E++ VGL DK + LSGG K++ + IA L + KV++ D+ TS +DP + R
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGGQKQR--VAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 624 WQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS--SLFLKHQYGVGYT 679
+L+K I + G ILL TH MD + + D +A+++NG L + +F + +
Sbjct: 203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL--A 260
Query: 680 LTLVKSAPDASAAADIVYRHIPSALCVSEVGTEITF 715
++S D R + F
Sbjct: 261 QKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEF 296
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-27
Identities = 66/258 (25%), Positives = 128/258 (49%), Gaps = 18/258 (6%)
Query: 1339 QVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAG 1398
+ D +I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAG
Sbjct: 9 HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRT--IQALNNVSLHVPAGQIYGVIGASGAG 66
Query: 1399 KTTTLSMISGEEYPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHL 1454
K+T + ++ E PT+G+ + G+++ S+ ARR IG Q LL TV ++
Sbjct: 67 KSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNV 126
Query: 1455 ELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKK-PSFTLSGGNKRKLSVAIAMIGDPPI 1512
L + + + V E L+ L PS LSGG K+++++A A+ +P +
Sbjct: 127 ALPLELDNTPKDEVKRRVTE-LLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKV 184
Query: 1513 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLR 1572
++ D+ ++ +DP R + E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 185 LLCDQATSALDPATTRSILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELI 243
Query: 1573 CIGS-------PQHLKTR 1583
+ P+ +
Sbjct: 244 EQDTVSEVFSHPKTPLAQ 261
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 7e-34
Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 23/257 (8%)
Query: 404 HVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKR 463
+A V IN L A + ++ + ++ ++ K K+
Sbjct: 222 KSYAARVGINNFLKGYLP-AENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLG 280
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
V++ E +I+ +LG NG GK+T +LVG I G + ++
Sbjct: 281 DFQLVVDNG--EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK--- 335
Query: 524 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIV 581
PQ + TV+++LE K+ L S E+ + L +
Sbjct: 336 --------PQRIFPNYDGTVQQYLE-----NASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 582 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLT 639
V LSGG +KL + L ++ + +LD+P+S +D + + IK++ + + +
Sbjct: 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
Query: 640 THSMDEAEELGDRIAIM 656
H + + + DRI +
Sbjct: 443 DHDLSIHDYIADRIIVF 459
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-30
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 18/245 (7%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
D + + + + + + GE G LG NG GKTT ++ GE
Sbjct: 259 DLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318
Query: 1411 YPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
+G+ + + Y PQ TVQ++LE ++ +
Sbjct: 319 TADEGSVTPEKQILS-----------YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
V ++L +L + + LSGG +KL +A + + + +LD+PS+ +D + +
Sbjct: 368 EVTKRL---NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFL 1588
+ I R++ + I H ++ + RI + G + SP LKT FL
Sbjct: 425 AKAIKRVTRERKAVTFI-IDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFL 483
Query: 1589 -ELEV 1592
ELEV
Sbjct: 484 RELEV 488
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 28/211 (13%)
Query: 469 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI 524
VN +L T N IL +LG NG GK+T + +L G I P GD N DE+
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD-----PNSKVGKDEV 65
Query: 525 RKGLGVCPQYDI-----------LFPELTVREHLEMFAVLKGVKEELLESV-----VAEM 568
K +I L ++ LKG E+L + E+
Sbjct: 66 LKRF---RGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEV 122
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIK 628
+ + + + N LSGG ++L + +L+ ++ V I D+P+S +D + I+
Sbjct: 123 KELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182
Query: 629 KIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
++ K + +++ H + + L D I I+
Sbjct: 183 ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 6e-20
Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 33/206 (16%)
Query: 1383 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT-------------------AFIFGKD 1423
+ G LG NG GKTT L +++GE P G F +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE- 80
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
+ S+ I Y + ++L + + + + E ++
Sbjct: 81 LYSNELKIVHKIQY---VEYASKFLKGTVN-------EILTKIDERGKKDEVKELLNMTN 130
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
K + LSGG ++L VA +++ + + I D+PS+ +D + M + I L + K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL--LKNK 188
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGG 1569
VI+ H + L I I+ G
Sbjct: 189 Y-VIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-31
Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 27/266 (10%)
Query: 404 HVSSAEVKINKKLSKEKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKR 463
+S IN L E + I+ + + D R K
Sbjct: 306 LPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSA---SRAFSYPSLKKT 362
Query: 464 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 523
+N + +++IL ++G NG GK+T I +L G + P G +
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG--------------Q 408
Query: 524 IRKGLGVC--PQYDILFPELTVREHLEMFAVLKGVKEELL-ESVVAEMVDEVGLADKVNI 580
L V PQ TVR+ K ++ + L ++V + + D ++
Sbjct: 409 DIPKLNVSMKPQKIAPKFPGTVRQLFF-----KKIRGQFLNPQFQTDVVKPLRIDDIIDQ 463
Query: 581 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIILL 638
V+ LSGG +++++ +AL + + ++DEP++ +D + ++I++ + +
Sbjct: 464 EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
Query: 639 TTHSMDEAEELGDRIAIMANGSLKCC 664
H A L D++ + K
Sbjct: 524 VEHDFIMATYLADKVIVFEGIPSKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 9e-29
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 19/234 (8%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
+ YP K++ ++ E +G NG GKTT + +++G P +G
Sbjct: 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ- 408
Query: 1418 FIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1477
I ++ P+ I TV++ R + + DV ++ L
Sbjct: 409 DIPKLNVSMKPQK----IAPKFP-------GTVRQLFFKKIRGQFLNPQFQTDV-VKPL- 455
Query: 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
+ + LSGG +++++ +A+ I ++DEPS +D + +VI R
Sbjct: 456 --RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 1538 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCI--GSPQHLKTRFGNFLE 1589
KTA I H A L ++ + G + +P+ L T FL+
Sbjct: 514 ILHNKKTAFI-VEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLK 566
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 41/201 (20%), Positives = 82/201 (40%), Gaps = 16/201 (7%)
Query: 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT----ADMDEIRK--- 526
T Q+L L+G NG GKST + +L G P G + E++
Sbjct: 98 PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 527 -------GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVN 579
+ PQY P ++ ++ L ++ E V + + L + +
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILL 638
+ LSGG ++ ++G++ + ++ V + DEP+S +D Q+I+ + + ++
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 639 TTHSMDEAEELGDRIAIMANG 659
H + + L D + I+
Sbjct: 277 VEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-21
Identities = 49/256 (19%), Positives = 95/256 (37%), Gaps = 34/256 (13%)
Query: 1355 IYLRNLRKVYPGG--KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I + NL R A + + G+ G +GTNG GK+T L +++G++ P
Sbjct: 70 IQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 1413 TDGTAFI-------------------FGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEH 1453
G F K + D KA + PQ+ + ++
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK-----PQYVDNIP-RAIKGP 183
Query: 1454 LELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513
++ + + + + V + L K+ LSGG ++ ++ ++ + + +
Sbjct: 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVY 243
Query: 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG----- 1568
+ DEPS+ +D + ++I L K VI H ++ L + I+ G
Sbjct: 244 MFDEPSSYLDVKQRLNAAQIIRSL-LAPTKY-VICVEHDLSVLDYLSDFVCIIYGVPSVY 301
Query: 1569 GQLRCIGSPQHLKTRF 1584
G + S + F
Sbjct: 302 GVVTLPASVREGINIF 317
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-31
Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEI-R 525
A++ + +++ + + ++G NG+GKST I+++ G + G K+IT + E+
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 526 KGLGVCPQYDILFPELTVRE------HLEMFAVLKGV-------KEELLESVVAEMVDEV 572
G+ Q E+TV E + L + KEE + ++++ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK- 631
L+ + LSGG + + +G AL+ + K++++DEP +G+ P + + ++K
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 632 KGRIILLTTHSMDEAEELGDRIAIMANGSL 661
KG L+ H +D D + +M NG +
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 6e-28
Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I+ N+ K + G + A+ ++ SV G+ +G NG+GK+T +++I+G
Sbjct: 6 EILRTENIVKYF-GEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 59
Query: 1413 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQE------HLELYARIKGV- 1463
+G + KDI + + I Q L+ +TV E + + +
Sbjct: 60 DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 119
Query: 1464 ------AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
E M + + L L + + LSGG + + + A++ +P ++++DE
Sbjct: 120 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
P G+ P ++ + L + ++ H ++ + +M GQ+ G
Sbjct: 180 PIAGVAPGLAHDIFNHVLEL--KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237
Query: 1578 Q 1578
+
Sbjct: 238 E 238
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
+ L+ V+AGE +G NGAGK+T L+ ++G G+ G+ + +
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 71
Query: 1433 -RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFT 1491
Y Q V +L L + +++ + L + +
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 1492 LSGGNKRKLSVAIAMI---------GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1542
LSGG ++ V +A + +++LDEP +D + + +++S L ++QG
Sbjct: 127 LSGGEWQR--VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-SQQG 183
Query: 1543 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1578
+++++H +N R ++ GG++ G +
Sbjct: 184 LA-IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE 218
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 38/207 (18%), Positives = 85/207 (41%), Gaps = 15/207 (7%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527
+ L + +IL L+G NGAGKST ++ + G+ G G+ + A ++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALH 74
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 587
Q V +L + ++ ++ ++ + L DK+ LSG
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQLSG 129
Query: 588 GMKRKLSLGIAL-------IGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KKGRIILLT 639
G +++ L + ++++LDEP + +D +++ + ++G I+++
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 640 THSMDEAEELGDRIAIMANGSLKCCGS 666
+H ++ R ++ G + G
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-29
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 461 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD 520
K + + + +++ ++G NG GK+T + ML G+ PT G + D
Sbjct: 364 VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWD 416
Query: 521 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-VVAEMVDEVGLADKVN 579
+ K PQY E TV E L K +L + E++ +G+ D +
Sbjct: 417 LTVAYK-----PQYIKAEYEGTVYELLS-----KIDSSKLNSNFYKTELLKPLGIIDLYD 466
Query: 580 IVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI--KKGRIIL 637
V LSGG +++++ L+ D+ + +LDEP++ +D + I+ + K + L
Sbjct: 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Query: 638 LTTHSMDEAEELGDRIAIM 656
+ H + + + DR+ +
Sbjct: 527 VVEHDVLMIDYVSDRLIVF 545
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 19/228 (8%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
YP + + ++ GE G +G NG GKTT + M++G E PT+G
Sbjct: 360 YPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT- 418
Query: 1424 IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK 1483
+ Y PQ+ TV E L K + + ++ L ++
Sbjct: 419 -----------VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL----LKPLGIID 463
Query: 1484 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1543
+ LSGG +++++A ++ D I +LDEPS +D + + I L + K
Sbjct: 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 1544 TAVILTTHSMNEAQALCTRIGIMVGGQLRC--IGSPQHLKTRFGNFLE 1589
TA++ H + + R+ + G R P ++ FL
Sbjct: 524 TALV-VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLA 570
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 8e-21
Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 23/205 (11%)
Query: 469 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPP------TTGDALVFGKNIT 518
VN+ L + + ++ ++G NG GK+T + +L G + P + D ++
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 519 ADMDEIRKGLG------VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 572
+ + V PQY L P+ + V + +K+ E+V E+
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK------VRELLKKVDEVGKFEEVVKEL 216
Query: 573 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632
L + ++ + LSGG +++++ AL+ + DEP+S +D ++I+++
Sbjct: 217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 633 -GRIILLTTHSMDEAEELGDRIAIM 656
G+ +L+ H + + L D I ++
Sbjct: 277 EGKAVLVVEHDLAVLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-20
Identities = 61/292 (20%), Positives = 109/292 (37%), Gaps = 31/292 (10%)
Query: 1355 IYLRNLRKVYPGG--KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE--- 1409
I + NL + R V V+ G G +G NG GKTT + +++G+
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 1410 ---EYPTDGTAFIFGKDIRSDPKAARRLIGYC------PQFDALLEYLTVQEHLELYARI 1460
E I RL PQ+ LL + EL ++
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203
Query: 1461 KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
+ ++VV E +L + LSGG +++++A A++ DEPS+
Sbjct: 204 D--EVGKFEEVVK----ELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQ 1578
+D + + VI RL+ +GK V++ H + L I ++ G G P+
Sbjct: 258 YLDIRQRLKVARVIRRLA-NEGKA-VLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPK 315
Query: 1579 HLKTRFGNFLE-------LEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL 1623
+ FL+ + +P E+ L + + +E + + P +
Sbjct: 316 GTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY 367
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-29
Identities = 67/263 (25%), Positives = 130/263 (49%), Gaps = 27/263 (10%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I + +L + + ++ +L+ V++GE F LG GAGKT L +I+G P
Sbjct: 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 1414 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G + GKD+ + I + Q +L ++ V+++LE R+K + + V+
Sbjct: 54 SGRILLDGKDVTDLS-PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVL 109
Query: 1474 E--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMW 1531
+ + ++ + L + P TLSGG ++++++A A++ +P I++LDEP + +DP +
Sbjct: 110 DTARDLKIEHLLD-RNPL-TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 1532 EVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF--- 1584
E++S L + T V+ TH EA+ + RI +++ G+L +G P+ +
Sbjct: 168 EMLSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVAS 226
Query: 1585 ----GNFLELEVKPTEVSSVDLE 1603
N L+ V E + +
Sbjct: 227 FVGFENVLKGRVISAEQGLLRIR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-23
Identities = 53/219 (24%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I L + + ++++L L + + +LG GAGK+ + ++ G P +G
Sbjct: 2 IEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQ-YDILFPELTVREH----LEMFAVLKGV-KEELLES 563
L+ GK++T D+ + + Q Y LFP + V+++ + M K + +
Sbjct: 57 ILLDGKDVT-DLSPEKHDIAFVYQNY-SLFPHMNVKKNLEFGMRM----KKIKDPK---- 106
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
V + ++ + ++ LSGG +++++L AL+ + K+++LDEP S +D +
Sbjct: 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD-PRTQEN 165
Query: 624 WQL-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+ + + K +L TH EA + DRIA++ +G
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-28
Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 25/230 (10%)
Query: 430 EPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNG 489
++ + + + +L K Y + + + + +++ ++G NG
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 490 AGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM 549
GK+T + ML G+ PT G I D+ K PQY E TV E L
Sbjct: 323 IGKTTFVKMLAGVEEPTEGK-------IEWDLTVAYK-----PQYIKADYEGTVYELLS- 369
Query: 550 FAVLKGVKEELLESV-VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608
K +L + E++ +G+ D + V LSGG +++++ L+ D+ + +L
Sbjct: 370 ----KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL 425
Query: 609 DEPTSGMDPYSMRLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIM 656
DEP++ +D + I+ + K + L+ H + + + DR+ +
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-24
Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 19/234 (8%)
Query: 1358 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1417
R YP + + ++ GE G +G NG GKTT + M++G E PT+G
Sbjct: 284 RETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343
Query: 1418 FIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1477
+ Y PQ+ TV E L K + + ++ L
Sbjct: 344 EWDLT------------VAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL----LK 387
Query: 1478 EFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1537
++ + LSGG +++++A ++ D I +LDEPS +D + + I L
Sbjct: 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 1538 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC--IGSPQHLKTRFGNFLE 1589
+ KTA+++ H + + R+ + G + P ++ FL
Sbjct: 448 MEKNEKTALVV-EHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRFLA 500
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-22
Identities = 44/220 (20%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP---- 505
+ +L + + G V + E ++ ++G NG GKST + +L G + P
Sbjct: 18 SHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77
Query: 506 --TTGDALVFGKNITADMDEIRKGLGVC------PQYDILFPELTVREHLEMFAVLKGVK 557
+ D ++ + K PQY L P+ + V++ +K
Sbjct: 78 DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK------VIELLK 131
Query: 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 617
+ + E+V + L + + ++ LSGG +++++ AL+ ++ DEP+S +D
Sbjct: 132 KADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191
Query: 618 YSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIM 656
+ I+++ + G+ +L+ H + + L D I ++
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 57/295 (19%), Positives = 111/295 (37%), Gaps = 39/295 (13%)
Query: 1354 IIYLRNLRK--VYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
++ L + V+ G + V V+ G G +G NG GK+T + +++G+
Sbjct: 17 RSHMEQLEEDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 1412 P------TDGTAFIFGKDIRSDPKAARRLIGYC------PQFDALLEYLTVQEHLELYAR 1459
P I +L PQ+ L+ + +EL +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK 132
Query: 1460 --IKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
G E + + +E ++E ++ LSGG +++++A A++ + DE
Sbjct: 133 ADETGKLEEVVKALELENVLEREI--------QHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIG 1575
PS+ +D + I RLS +GK+ V++ H + L I ++ G G
Sbjct: 185 PSSYLDIRQRLNAARAIRRLS-EEGKS-VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFS 242
Query: 1576 SPQHLKTRFGNFLE-------LEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL 1623
P+ + FL + +P E+ + +I +E + P +
Sbjct: 243 QPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY 297
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 70/270 (25%), Positives = 125/270 (46%), Gaps = 26/270 (9%)
Query: 1349 SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG 1408
+ I + K+YPGG +V ++F ++ GE G LG +G+GKTT L +I+G
Sbjct: 9 HHGSMTIEFVGVEKIYPGGA-----RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
Query: 1409 EEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
E PT G +I GK + P +R +G Q AL +++TV +++ R K V + M
Sbjct: 64 LERPTKGDVWIGGKRVTDLP-PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM 122
Query: 1469 DDVVME--KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
D V E + + + + + P LSGG ++++++A A+ P +++ DEP +D
Sbjct: 123 DARVRELLRFMRLESYAN-RFPH-ELSGGQQQRVALARALAPRPQVLLFDEPFAAID--T 178
Query: 1527 K--RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---- 1580
+ R + + ++ G T + TH EA + R+ ++ G + G+P+ +
Sbjct: 179 QIRRELRTFVRQVHDEMGVT-SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Query: 1581 KTRF-------GNFLELEVKPTEVSSVDLE 1603
T F N V+ +
Sbjct: 238 GTLFVASFIGESNVWTRAVQNGRIEVAGAA 267
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 58/217 (26%), Positives = 113/217 (52%), Gaps = 16/217 (7%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+ + K+Y G +V + + E +++ LLG +G+GK+T + ++ GL PT GD
Sbjct: 15 IEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLESVV 565
+ GK +T D+ ++ +G+ Q LF +TV ++ L K V ++ +++ V
Sbjct: 72 VWIGGKRVT-DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLRE----KRVPKDEMDARV 126
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E++ + L N LSGG +++++L AL +V++ DEP + +D +R +
Sbjct: 127 RELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID-TQIRRELR 185
Query: 626 L-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
++++ G + TH +EA E+ DR+ ++ G
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 31/257 (12%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
N + + NL Y L F + G+ LG NG GK+T L ++ G
Sbjct: 2 NKALSVENLGFYYQAEN-----FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56
Query: 1412 PTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMD 1469
P G ++ + IG+ PQF + +V + + + I A+ +
Sbjct: 57 PIQGKIEVY------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104
Query: 1470 D--VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
D V M+ L +L AK+ +LSGG ++ + +A A+ + +++LDEP++ +D +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP------QHLK 1581
+ ++ L+ Q T V+ TTH N+ A+ + ++ + G ++L
Sbjct: 165 DIVLSLLIDLAQSQNMT-VVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSENLT 222
Query: 1582 TRFGNFLELEVKPTEVS 1598
F L + + +
Sbjct: 223 ALFH--LPMFEQQAQYK 237
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ + L Y + L L + ILA+LG NG GKST + +L+G+ P G
Sbjct: 5 LSVENLGFYYQAEN---FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 510 ALVFGKNITADMDEIRKGLGVCPQ-YDILFPELTVRE--------HLEMFAVLKGVKEEL 560
E+ + +G PQ + F +V + H+ FA K +
Sbjct: 62 I------------EVYQSIGFVPQFFSSPFA-YSVLDIVLMGRSTHINTFAKPK--SHD- 105
Query: 561 LESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
V + +D + L +LSGG ++ + + A+ + K+++LDEPTS +D +
Sbjct: 106 -YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 621 RLTWQLIKKI--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKC 663
+ L+ + + ++ TTH ++ + ++ ++ + K
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 4e-28
Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 37/276 (13%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
A +++ +L K + ++ ++ S+ GE +G +G GKTT L ++G E
Sbjct: 2 TAALHIGHLSKSF------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55
Query: 1412 PTDGTAFIFGKDIRSDPK---AARRLIGYCPQFDALLEYLTVQEH----LELYARIKGVA 1464
P G + GK I S R +GY Q L +LTV + L
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGL----GNGKGR 111
Query: 1465 EYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNK-RKLSVAIA--MIGDPPIVILDEPST 1520
+ + L + + A P LSGG + R A+A + DP +++LDEP +
Sbjct: 112 TAQERQRIEAMLELTGISELAGRYPH-ELSGGQQQR---AALARALAPDPELILLDEPFS 167
Query: 1521 GMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+D +R + E + GK+A + +H EA RI +M G++ SP L
Sbjct: 168 ALDEQLRRQIREDMIAALRANGKSA-VFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Query: 1581 ----KTRF-------GNFLELEVKPTEVSSVDLEDL 1605
G + + L L
Sbjct: 227 YRQPADLDAALFIGEGIVFPAALNADGTADCRLGRL 262
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-25
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ I L K + N +N + L+L +IL ++G +G GK+T + L G P +G+
Sbjct: 5 LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 510 ALVFGKNITADMDEI---RKGLGVCPQYDILFPELTVREH----LEMFAVLKGVKEELLE 562
+ GK I + + + LG Q +LFP LTV + L +
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN----GKGRTAQER 116
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ M++ G+++ LSGG +++ +L AL D ++++LDEP S +D +R
Sbjct: 117 QRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD-EQLRR 175
Query: 623 TWQL-IKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+ + + G+ + +H +EA + DRIA+M G
Sbjct: 176 QIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQG 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 1368 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1427
KR + LG GAGK+ L +I+G P G + G DI
Sbjct: 9 KRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1487
P RR IG+ PQ AL +L+V ++ Y ++ V D V E + + +
Sbjct: 66 P-PERRGIGFVPQDYALFPHLSVYRNIA-YG-LRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 1488 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
LSGG ++++++A A++ P +++LDEP + +D K + E + + ++
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-IL 181
Query: 1548 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---KTRF-------GNFLELEVKPTE 1596
TH + EA L + +M+ G++ G + L K N L K +
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 457 KVYATKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGK 515
KV A KR GN ++ LLG GAGKS + ++ G++ P G+ + G
Sbjct: 4 KVRAEKRLGNFRLNVDFEM---GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60
Query: 516 NITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA 575
+IT + R+G+G PQ LFP L+V ++ + L+ V+ + V EM +++G+A
Sbjct: 61 DIT-PLPPERRGIGFVPQDYALFPHLSVYRNIA-YG-LRNVERVERDRRVREMAEKLGIA 117
Query: 576 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL-IKKIKK-- 632
++ LSGG +++++L AL+ ++++LDEP S +D + ++ +++
Sbjct: 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD-LKTKGVLMEELRFVQREF 176
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANG 659
IL TH + EA L D +A+M NG
Sbjct: 177 DVPILHVTHDLIEAAMLADEVAVMLNG 203
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-26
Identities = 85/345 (24%), Positives = 157/345 (45%), Gaps = 48/345 (13%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P
Sbjct: 2 VRIIVKNVSKVFKKGKV----VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP 57
Query: 1413 TDGTAFIFGKDIRSDPKA----ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
+ G + + + S+ K R IG Q AL LT E++ +++ +
Sbjct: 58 STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 1469 DDVVME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
V E K+++ +L H P LSG ++++++A A++ DP +++LDEP + +D
Sbjct: 118 RKRVEEVAKILDIHHVLNH--FPR-ELSGAQQQRVALARALVKDPSLLLLDEPFSNLD-- 172
Query: 1526 AK-RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL--- 1580
A+ R ++ + +R G T +++ +H + A+ R+G++V G+L +G P+ L
Sbjct: 173 ARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Query: 1581 -KTRF-----G--NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLL-----DDL 1627
+ G N LE +V V L F + + +D+
Sbjct: 232 PVSIQVASLIGEINELEGKVTNEGVVIGSLR----------FPVSVSSDRAIIGIRPEDV 281
Query: 1628 EVCIGGIDSISSENATAAEISLSQEM---LLIVGRWLGNEERIKT 1669
++ I S ++ + I L +EE I T
Sbjct: 282 KLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFT 326
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 8e-20
Identities = 61/235 (25%), Positives = 119/235 (50%), Gaps = 32/235 (13%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG+
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 510 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 558
+ + + L V P+ I L+P LT E++ F + + KE
Sbjct: 62 LYFDDRLVAS-----NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIA-FPLTNMKMSKE 115
Query: 559 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+ + V VA+++D + + R LSG +++++L AL+ D +++LDEP S +D
Sbjct: 116 EIRKRVEEVAKILDIHHVLNH---FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 617 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
S R L+K+++ G +L+ +H + + DR+ ++ G L G
Sbjct: 173 ARMRDSARA---LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 23/220 (10%)
Query: 451 QIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDA 510
+++ LH Y G A+ + L + QI+ L+G NGAGK+TT+S + GL+ G
Sbjct: 8 EVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 511 LVFGKNITA-DMDEI-RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
+ G++IT I R G+ + P+ +FPELTV E+L M A + KE +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG-----IKRD 118
Query: 569 VDEV-----GLADKVNIVVRALSGG---MKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
++ + L +++ + LSGG M L++G AL+ K++++DEP+ G+ P +
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQM---LAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 621 RLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
+++I+KI + G ILL + A ++ ++ G
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 18/230 (7%)
Query: 1357 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416
+++L Y A A+ + V G+ +G NGAGKTTTLS I+G G
Sbjct: 9 VQSLHVYY------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 1417 AFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLEL--YARIKGVAEYRMDDVV 1472
G+DI + P R I P+ + LTV E+L + Y R K + D
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-KDKEGIKRD--- 118
Query: 1473 MEKLVE-FDLLKH-AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1530
+E + F LK K+ TLSGG ++ L++ A++ P ++++DEPS G+ PI +
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1531 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+EVI ++ Q T ++L + A + ++ GQ+ G L
Sbjct: 179 FEVIQKI--NQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 95.6 bits (239), Expect = 5e-22
Identities = 55/228 (24%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
I+ N++KV G + + ++ SV+ GE +G +G+GK+T L ++ +
Sbjct: 2 AEILRAENIKKVIRGYE------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55
Query: 1412 PTDGTAFIFGKDIR--SDPKAA---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466
PT+G F+ GK++ ++ + + R +G+ QF L+ LT E++ + G +
Sbjct: 56 PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK 115
Query: 1467 RMDDVVMEKLVEFDL---LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+ L E L L KP LSGG ++++++A A+ +P ++ DEP+ +D
Sbjct: 116 EAKERGEYLLSELGLGDKLSR--KPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+ + ++ +++ G + +++ TH A L R M G++
Sbjct: 173 SANTKRVMDIFLKIN-EGGTS-IVMVTHERELA-ELTHRTLEMKDGKV 217
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 13/219 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ + KV + + L++ + + ++++G +G+GKST + +L L PT G
Sbjct: 5 LRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 510 ALVFGKNITADMDE-----IRKG-LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES 563
+ GK + +E +R LG Q+ L PELT E++ + + G ++ +
Sbjct: 61 VFLEGKEV-DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE 119
Query: 564 VVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
++ E+GL DK++ LSGG ++++++ AL + ++ DEPT +D + +
Sbjct: 120 RGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 624 WQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
+ KI + G I++ TH + AE R M +G +
Sbjct: 180 MDIFLKINEGGTSIVMVTHERELAEL-THRTLEMKDGKV 217
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 60/223 (26%), Positives = 120/223 (53%), Gaps = 25/223 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I + +L K + G+ + + + + E +++ ++G +G+GKST + L L G+
Sbjct: 25 IDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 510 ALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFA--VLKGVKEELLESV 564
++ G N+ A +++++R+ +G+ Q LFP +TV ++ A ++ E E+
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI-TLAPMKVRKWPREKAEAK 139
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
E++D+VGL DK + +LSGG +++++ AL + K+++ DEPTS +DP
Sbjct: 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP------- 192
Query: 625 QLIKKI--------KKGRIILLTTHSMDEAEELGDRIAIMANG 659
+++ ++ +G +++ TH M A E+GDR+ M G
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 66/264 (25%), Positives = 118/264 (44%), Gaps = 43/264 (16%)
Query: 1347 SGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMI 1406
GS +I + L+K + + + + ++ GE +G +G+GK+T L +
Sbjct: 17 RGSHMLQMIDVHQLKKSF------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
Query: 1407 SGEEYPTDGTAFIFGKDIRSDPK---AARRLIGYCPQ-FDALLEYLTVQEHLELY-ARIK 1461
+ E +G I G ++++ R +G Q F+ L ++TV ++ L +++
Sbjct: 71 NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN-LFPHMTVLNNITLAPMKVR 129
Query: 1462 GVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIA----MIGDPPIVILDE 1517
+ + ME L + L A +LSGG ++ VAIA M +P I++ DE
Sbjct: 130 KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQR--VAIARALAM--EPKIMLFDE 185
Query: 1518 PSTGMDPIAKRFMWEVISR-LST-----RQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
P++ +DP E++ LS +G T V++ TH M A+ + R+ M GG +
Sbjct: 186 PTSALDP-------EMVGEVLSVMKQLANEGMTMVVV-THEMGFAREVGDRVLFMDGGYI 237
Query: 1572 -------RCIGSPQHLKTRFGNFL 1588
PQH +T+ FL
Sbjct: 238 IEEGKPEDLFDRPQHERTK--AFL 259
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-20
Identities = 61/232 (26%), Positives = 117/232 (50%), Gaps = 23/232 (9%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKV-AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
++ L+N+ K Y G + + A+ ++ +++ GE +G +G+GK+T L++I + P
Sbjct: 1 MVKLKNVTKTYKMG---EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57
Query: 1413 TDGTAFIFGKDIR--SDPKAA---RRLIGYCPQFDALLEYLTVQEHLEL---YARIKGVA 1464
T+G +I D + R IG+ Q L+ LT E++EL + ++
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 1465 EYRMDDVVMEKLVEFDL----LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520
+E L +L H KP+ LSGG ++++++A A+ +PPI++ D+P T
Sbjct: 118 GEERRKRALECLKMAELEERFANH--KPN-QLSGGQQQRVAIARALANNPPIILADQP-T 173
Query: 1521 G-MDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1571
+D + +++ +L+ GKT V++ TH +N A RI + G++
Sbjct: 174 WALDSKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVA-RFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 54/225 (24%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 510 ALVFGKNITADMDE-----IR-KGLG-VCPQYDILFPELTVREHLEM---FAVLKGVKEE 559
+ D+D+ IR +G V Q++ L P LT E++E+ F + E
Sbjct: 62 VYIDNIKT-NDLDDDELTKIRRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGE 119
Query: 560 LLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618
E + L ++ N LSGG ++++++ AL + +++ D+PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 619 S----MRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANG 659
+ M+L +L + + G+ +++ TH ++ A G+RI + +G
Sbjct: 180 TGEKIMQLLKKLNE--EDGKTVVVVTHDINVARF-GERIIYLKDG 221
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 4e-19
Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 45/302 (14%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I L N+ K + A++++ ++ GE LG +G+GK+T L I+G P
Sbjct: 2 VEIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP 55
Query: 1413 TDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
T G + KD+ PK R +G Q AL ++TV +++ ++ +D
Sbjct: 56 TSGKIYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK 113
Query: 1472 VME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK- 1527
V E K++ LL + P LSGG ++++++A A++ +P +++LDEP + +D A
Sbjct: 114 VREVAKMLHIDKLLN--RYPW-QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALL 168
Query: 1528 RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----KT 1582
R + + RL G T + TH EA A+ RI ++ G++ +G+P + K
Sbjct: 169 RLEVRAELKRLQKELGIT-TVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227
Query: 1583 RF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDL---EVC 1630
+F G NF+E +V+ + I ++ IP Q ++ + EV
Sbjct: 228 KFVGGFLGNPPMNFVEAKVE---------DGKLVITEKSKLPIPKQYVEIVKETGITEVI 278
Query: 1631 IG 1632
IG
Sbjct: 279 IG 280
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 62/228 (27%), Positives = 120/228 (52%), Gaps = 39/228 (17%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ + K + GN A+N++ L + + + +ALLG +G+GKST + + G+ PT+G
Sbjct: 4 IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 558
K++T + P+ ++ L+P +TV +++ F + L+ +E
Sbjct: 60 IYFDEKDVT----------ELPPKDRNVGLVFQNWALYPHMTVYKNIA-FPLELRKAPRE 108
Query: 559 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+ + V VA+M+ L ++ LSGG ++++++ AL+ + +V++LDEP S +D
Sbjct: 109 EIDKKVREVAKMLHIDKLLNRYP---WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 617 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
+R +K+++K G + TH EA + DRIA++ G
Sbjct: 166 ALLRLEVRAE---LKRLQKELGITTVYVTHDQAEALAMADRIAVIREG 210
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-18
Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ + LHK Y G + + L +++++G +G+GKST + + L P+ G
Sbjct: 7 LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 510 ALVFGKNIT--------------ADMDEIRKGLGVCPQYDILFPELTVREHLEMFA---V 552
+V G+NI + +R L + Q+ L+ +TV E++ M A V
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-MEAPIQV 121
Query: 553 LKGVKEELLESVVAEMVDEVGLADKVNIVV-RALSGGMKRKLSLGIALIGDSKVVILDEP 611
L K + + + +VG+ ++ LSGG ++++S+ AL + V++ DEP
Sbjct: 122 LGLSKHD-ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180
Query: 612 TSGMDPYSMRLTWQLIKKIKK----GRIILLTTHSMDEAEELGDRIAIMANG 659
TS +DP L ++++ +++ G+ +++ TH M A + + + G
Sbjct: 181 TSALDP---ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 59/265 (22%), Positives = 123/265 (46%), Gaps = 53/265 (20%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+++ +L K Y + ++ +AG+ +G++G+GK+T L I+ E
Sbjct: 3 SENKLHVIDLHKRY------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56
Query: 1411 YPTDGTAFIFGKDIRSDPKAA--------------RRLIGYCPQ-FDALLEYLTVQEHL- 1454
P++G + G++I R + Q F+ L ++TV E++
Sbjct: 57 KPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVM 115
Query: 1455 ELYARIKGVAEYRMDDVVMEKLVEFDLL--KHAKKPSFTLSGGNKRKLSVAIA----MIG 1508
E ++ G++++ + ++ L + + K P LSGG +++ V+IA M
Sbjct: 116 EAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH-LSGGQQQR--VSIARALAM-- 170
Query: 1509 DPPIVILDEPSTGMDPIAKRFMWE-------VISRLSTRQGKTAVILTTHSMNEAQALCT 1561
+P +++ DEP++ +DP E ++ +L+ +GKT V++ TH M A+ + +
Sbjct: 171 EPDVLLFDEPTSALDP-------ELVGEVLRIMQQLA-EEGKTMVVV-THEMGFARHVSS 221
Query: 1562 RIGIMVGGQLRCIGSPQHLKTRFGN 1586
+ + G++ G P+ + FGN
Sbjct: 222 HVIFLHQGKIEEEGDPEQV---FGN 243
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 7e-18
Identities = 93/364 (25%), Positives = 155/364 (42%), Gaps = 56/364 (15%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I + NL+K + AV ++F V+ GE LG +G GKTTTL M++G P
Sbjct: 2 PSIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP 55
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
T G + + +D R +G Q AL ++TV E++ R + +++ ++ V
Sbjct: 56 TSGEIYFDDVLV-NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRV 114
Query: 1473 ME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAI--AMIGDPPIVILDEPSTGMDPIAK 1527
+E + + +LL +KP+ LSGG +++ VA+ A++ P +++ DEP + +D A
Sbjct: 115 VEIARKLLIDNLLD--RKPT-QLSGGQQQR--VALARALVKQPKVLLFDEPLSNLD--AN 167
Query: 1528 -RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL----K 1581
R M I L G T + TH EA + +RI + G+L G+P + K
Sbjct: 168 LRMIMRAEIKHLQQELGIT-SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226
Query: 1582 TRF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIG 1632
F G NFL V +E+ I++ I + EV +G
Sbjct: 227 NMFVASFIGNPPTNFLRDFS-------VSVENKQTILKRDDVIIKLPEPVDVKLKEVVVG 279
Query: 1633 ------GIDSISSENATAAEISLSQEML----LIVGRWLGNEERIKTLISSSSSPDRIFG 1682
I EN+ + + E L ++ + E IK + +P G
Sbjct: 280 IRPEHCRISRERVENSIPGVVYVV-EPLGRDIIVNVK-TEKGEIIKVFGDTGKAPQP--G 335
Query: 1683 EQLS 1686
E +
Sbjct: 336 ENVF 339
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-13
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 39/228 (17%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ L K + G AV+ + + + + +ALLG +G GK+TT+ ML G+ PT+G+
Sbjct: 4 IRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 558
+ + P+Y ++ L+P +TV E++ F + + + K+
Sbjct: 60 IYFDDVLVN----------DIPPKYREVGMVFQNYALYPHMTVFENIA-FPLRARRISKD 108
Query: 559 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+ + V +A + L D+ LSGG +++++L AL+ KV++ DEP S +D
Sbjct: 109 EVEKRVVEIARKLLIDNLLDRKP---TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 617 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
MR IK +++ G + TH EA + RIA+ G
Sbjct: 166 ANLRMIMRAE---IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQG 210
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-17
Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 50/304 (16%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+ L NL K + AV+ L +++ GE LG +G GKTTTL MI+G E P
Sbjct: 10 VEVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 63
Query: 1413 TDGTAFIFGKDI-RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV 1471
T+G + +D+ PK R I Q A+ ++TV E++ +IK + +D
Sbjct: 64 TEGRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR 121
Query: 1472 VME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAI--AMIGDPPIVILDEPSTGMDPIA 1526
V +L++ +LL + P+ LSGG +++ VA+ A++ +P ++++DEP + +D A
Sbjct: 122 VRWAAELLQIEELLN--RYPA-QLSGGQRQR--VAVARAIVVEPDVLLMDEPLSNLD--A 174
Query: 1527 K-RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL---- 1580
K R M I +L + T I TH EA + RI +M GQL IGSP +
Sbjct: 175 KLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233
Query: 1581 KTRF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDL---E 1628
+ F G N LE+ V + ++P LL D
Sbjct: 234 NSVFVATFIGAPEMNILEVSVGDGYLEGRGFR----------IELPQDLMDLLKDYVGKT 283
Query: 1629 VCIG 1632
V G
Sbjct: 284 VLFG 287
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-15
Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 39/235 (16%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L K + GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL PT G
Sbjct: 12 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 510 ALVFGKNITADMDEIRKGLGVCPQY-DI--------LFPELTVREHLEMFAV-LKGV-KE 558
+++T + P+ +I ++P +TV E++ F + +K K+
Sbjct: 68 IYFGDRDVT----------YLPPKDRNISMVFQSYAVWPHMTVYENIA-FPLKIKKFPKD 116
Query: 559 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+ + V AE++ L ++ LSGG ++++++ A++ + V+++DEP S +D
Sbjct: 117 EIDKRVRWAAELLQIEELLNRYP---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 617 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+MR IKK+++ + TH EA +GDRIA+M G L GS
Sbjct: 174 AKLRVAMRAE---IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 2e-16
Identities = 61/326 (18%), Positives = 109/326 (33%), Gaps = 44/326 (13%)
Query: 1299 KEWWKGTRHRLCNTPSSYLEPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLR 1358
+ + + Y+ L D LD V ++ L
Sbjct: 378 IDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLC 437
Query: 1359 NLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418
N G AK+ ++ ++ +G G NG GK+T + I+ + F
Sbjct: 438 NCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----GF 489
Query: 1419 IFGKDIRSDPKAARRLIGYCPQ-FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLV 1477
++ R Y D +V + + + + + + +KL+
Sbjct: 490 PTQEECR---------TVYVEHDIDGTHSDTSVLDFVF-----ESGVGTK--EAIKDKLI 533
Query: 1478 EFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISR 1536
EF P LSGG K KL++A A++ + I++LDEP+ +D + ++ ++
Sbjct: 534 EFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 1537 LSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLE-LEVKPT 1595
I +H +C I G +LR GNF E ++ P
Sbjct: 594 C-----GITSITISHDSVFLDNVCEYIINYEGLKLRKYK---------GNFTEFVKKCPA 639
Query: 1596 EVSSVDLEDLCQIIQERVFDIPSQRR 1621
+ E+L E F P
Sbjct: 640 AKA---YEELSNTDLEFKFPEPGYLE 662
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 3e-14
Identities = 54/306 (17%), Positives = 109/306 (35%), Gaps = 32/306 (10%)
Query: 359 LLDTLLYGVIGLYLDKVLPKENGVRYRWNFIFQNCFRRKKSVIKHHVSSAEVKINKKLSK 418
+++ LL K++ + + ++ + I K
Sbjct: 349 VVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITP----YMTIFLHEKK 404
Query: 419 EKECAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYE 478
K+ + + +E +G + + Y K +N QL L
Sbjct: 405 AKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKIL----LNKTQLRLKR 460
Query: 479 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILF 538
+ + G NG GKST + + G F +E R V D
Sbjct: 461 ARRYGICGPNGCGKSTLMRAIAN------GQVDGFPT-----QEECRTVY-VEHDIDGTH 508
Query: 539 PELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGI 597
+ +V + V + + + + + E G D+ + + + ALSGG K KL+L
Sbjct: 509 SDTSVLD-----FVFESGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALAR 561
Query: 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIM 656
A++ ++ +++LDEPT+ +D + + W L+ + G + +H + + + I
Sbjct: 562 AVLRNADILLLDEPTNHLDTVN--VAW-LVNYLNTCGITSITISHDSVFLDNVCEYIINY 618
Query: 657 ANGSLK 662
L+
Sbjct: 619 EGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 9e-09
Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 22/187 (11%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
AI+ + N+ YPG K + + F +G NGAGK+T +++++GE P
Sbjct: 670 AIVKVTNMEFQYPGTS----KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYRM 1468
T G ++ R I Y Q T E+++ + E
Sbjct: 726 TSGE-VYTHENCR---------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMD 775
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
+ A F + G +R + G + K
Sbjct: 776 RANRQ----INENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKS 831
Query: 1529 FMWEVIS 1535
W +
Sbjct: 832 ERWVPMM 838
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 9e-09
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 543 VREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV--NIVVRALSGGMKRKLSLGIALI 600
V E A+ G L + E +GL ++ + +R LSGG K KL L
Sbjct: 858 VAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTW 917
Query: 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDRIAIMANG 659
+++LDEPT+ +D S L L K +K+ +++ THS + + L + + + +G
Sbjct: 918 QRPHLIVLDEPTNYLDRDS--LGA-LSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG 974
Query: 660 SLK 662
+
Sbjct: 975 RMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 1440 QFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1499
+ E + R E L D + LSGG K K
Sbjct: 854 HSKMVAEVDMKEALASGQFRPLTRKEIE---EHCSML-GLDPEIVSHSRIRGLSGGQKVK 909
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQAL 1559
L +A P +++LDEP+ +D + + + + + VI+ THS + L
Sbjct: 910 LVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNL 964
Query: 1560 CTRIGIMVGGQLR 1572
+ + G++
Sbjct: 965 TEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 469 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 508
+ + + +A++G NGAGKST I++L G + PT+G
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-16
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+K ++G +Q + Y T R + + L L + + Q LAL+G +G GKST + +L
Sbjct: 1022 LKPNMLEGN-VQFSGVVFNYPT-RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Query: 500 VGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 558
P G + GK I ++ +R LG+ Q ILF ++ E++ + V
Sbjct: 1080 ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSY 1138
Query: 559 ELLESV--VAEMVDEV-GLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEP 611
E + A + + L DK N V LSGG K+++++ AL+ +++LDE
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 612 TSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEELGDRIAIMANG 659
TS +D S ++ + + K ++GR ++ H ++ A D I ++ NG
Sbjct: 1199 TSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNA----DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 3e-13
Identities = 57/230 (24%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 444 EVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 503
+ G ++ + +H Y + R + L L + Q +AL+G++G GKSTT+ ++ L
Sbjct: 383 NIQGN-LEFKNIHFSYPS-RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 504 PPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 562
P G + G++I ++ +R+ +GV Q +LF T+ E++ + V + +E
Sbjct: 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRY--GREDVTMDEIE 497
Query: 563 SVVAEM--VDE--VGLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
+ + + L + + +V LSGG K+++++ AL+ + K+++LDE TS
Sbjct: 498 KA-VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTHSMD---EAEELGDRIAIMANGSL 661
+D S + + K ++GR ++ H + A D IA G +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA----DVIAGFDGGVI 602
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-12
Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 58/290 (20%)
Query: 1328 DTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGE 1387
+D ID + N + +N+ YP R + ++ + L V++G+
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGN--LEFKNIHFSYPS--RKEVQI-LKGLNLKVKSGQ 417
Query: 1388 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQ----FD 1442
+G +G GK+TT+ ++ P DG I G+DIR+ + + R +IG Q F
Sbjct: 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477
Query: 1443 ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF------------ 1490
T+ E++ G + MD++ +K A F
Sbjct: 478 T-----TIAENIRY-----GREDVTMDEIE-------KAVKEANAYDFIMKLPHQFDTLV 520
Query: 1491 -----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545
LSGG K+++++A A++ +P I++LDE ++ +D ++ + + + +G+T
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTT 578
Query: 1546 VILTTHSMNEAQALCT-----RIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+++ A L T I GG + G+ L G + +L
Sbjct: 579 IVI-------AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-10
Identities = 58/257 (22%), Positives = 117/257 (45%), Gaps = 42/257 (16%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE--Y- 1411
+ + YP R V + L+ V+ G+ +G++G GK+T + ++ E Y
Sbjct: 1031 VQFSGVVFNYPT--RPSIPV-LQGLSLEVKKGQTLALVGSSGCGKSTVVQLL---ERFYD 1084
Query: 1412 PTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
P G+ F+ GK+I+ + + R +G Q L + ++ E++ Y
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENI-AYGDNS-------RV 1135
Query: 1471 VVMEKLVEFDLLKHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDPPIV 1513
V E++V K A F LSGG K+++++A A++ P I+
Sbjct: 1136 VSYEEIVR--AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193
Query: 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRC 1573
+LDE ++ +D +++ + E + + R+G+T I+ H ++ Q I ++ G+++
Sbjct: 1194 LLDEATSALDTESEKVVQEALDKA--REGRT-CIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249
Query: 1574 IGSPQHLKTRFGNFLEL 1590
G+ Q L + G + +
Sbjct: 1250 HGTHQQLLAQKGIYFSM 1266
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 33/235 (14%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ + KV+ G AV + L + + + + LLG +G GK+TT+ M+ GL P+ G
Sbjct: 4 VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 510 ALVFGKNITADMDEIRKGLGVCPQ-YDI--------LFPELTVREHLEMFAV-LKGV-KE 558
+ K + + KG+ V P+ DI L+P +TV +++ F + L+ V ++
Sbjct: 60 IYIGDK----LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-FPLKLRKVPRQ 114
Query: 559 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
E+ + V VAE++ L ++ R LSGG +++++LG A++ +V ++DEP S +D
Sbjct: 115 EIDQRVREVAELLGLTELLNRKP---RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Query: 617 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
MR +KK+++ G + TH EA +GDRIA+M G L+ GS
Sbjct: 172 AKLRVRMRAE---LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 26/240 (10%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A + L ++ KV+ AV ++ V+ GE LG +G GKTTTL MI+G E P
Sbjct: 2 AGVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP 55
Query: 1413 TDGTAFIFGKDIRSDPKAAR-----RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR 1467
+ G +I K + K R I Q AL ++TV +++ +++ V
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1468 MDDVVME--KLVEF-DLLKHAKKPSFTLSGGNKRKLSVAI--AMIGDPPIVILDEPSTGM 1522
+D V E +L+ +LL +KP LSGG +++ VA+ A++ P + ++DEP + +
Sbjct: 116 IDQRVREVAELLGLTELLN--RKPR-ELSGGQRQR--VALGRAIVRKPQVFLMDEPLSNL 170
Query: 1523 DPIAK-RF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
D AK R M + +L + G T I TH EA + RI +M G L+ +GSP +
Sbjct: 171 D--AKLRVRMRAELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 55/301 (18%), Positives = 114/301 (37%), Gaps = 39/301 (12%)
Query: 486 GHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVR 544
G G+GKST +S + L+ G+ + G + + +++ RK GV PQ +F T R
Sbjct: 54 GRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIF-SGTFR 111
Query: 545 EHL---------EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 595
++L E++ V V L SV+ + L + LS G K+ + L
Sbjct: 112 KNLDPNAAHSDQEIWKVADEVG---LRSVIEQF--PGKLDFVLVDGGCVLSHGHKQLMCL 166
Query: 596 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHS----MDEAEELGD 651
+++ +K+++LDEP++ +DP + ++ + +K+ ++L ++ D
Sbjct: 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE-----CD 221
Query: 652 RIAIMANGSLKCCGS-------------SLFLKHQYGVGYTLTLVKSAPDASAAADIVYR 698
+ ++ ++ S + F+ + + +A D +
Sbjct: 222 QFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPN 281
Query: 699 HIPSALCVSEVGTEITFKLPLASSSSFESMFREIESCIRKSVSKVEADATEDTDYLGIES 758
L V ++ + L + + V VE E ++ I S
Sbjct: 282 RQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPS 341
Query: 759 F 759
Sbjct: 342 I 342
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-09
Identities = 73/358 (20%), Positives = 138/358 (38%), Gaps = 29/358 (8%)
Query: 1351 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410
+ +++L Y + +++FS+ G+ G LG G+GK+T LS
Sbjct: 16 SGGQMTVKDLTAKY----TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71
Query: 1411 YPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHL---ELY--ARIKGVA 1464
+G I G S + R+ G PQ + T +++L + I VA
Sbjct: 72 NT-EGEIQIDGVSWDSITLEQWRKAFGVIPQ-KVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1465 EY-RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1523
+ + V+ + L LS G+K+ + +A +++ I++LDEPS +D
Sbjct: 130 DEVGLRSVIEQF--PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL-KT 1582
P + L VIL + A C + ++ ++R S L
Sbjct: 188 P---VTYQIIRRTLKQAFADCTVILCEARIE-AMLECDQFLVIEENKVRQYDSILELYHY 243
Query: 1583 RFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL----LDDLEVCIGGIDS-- 1636
F+ + +++ + ++ I + ++P R ++ +V +G S
Sbjct: 244 PADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLG 303
Query: 1637 ISSENATAAEIS-LSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDG 1693
I E+ ++I+ + E + V LGNE + I S + Q LV +G
Sbjct: 304 IRPEHLLPSDIADVILEGEVQVVEQLGNE--TQIHIQIPSIRQNLVYRQNDVVLVEEG 359
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 442 QQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG 501
I R + Y ++++ L++ + +++ ++G +G+GKST ++
Sbjct: 1 HHHHHHD-ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57
Query: 502 LIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL 560
P G L+ G ++ AD + +R+ +GV Q ++L ++ +++ A E++
Sbjct: 58 FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNI-SLANPGMSVEKV 115
Query: 561 LESVVAEMVDE--VGLADKVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
+ + + L + N +V LSGG ++++++ AL+ + K++I DE TS
Sbjct: 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175
Query: 615 MDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEELGDRIAIMANGSLKCCGS 666
+D S + + + KI KGR +++ H ++ A DRI +M G + G
Sbjct: 176 LDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQGK 226
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 33/202 (16%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-D 1427
+ D+ V + ++ S++ GE G +G +G+GK+T +I P +G I G D+ D
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 1428 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-- 1485
P RR +G Q D +L ++ +++ A + +EK++ L A
Sbjct: 78 PNWLRRQVGVVLQ-DNVLLNRSIIDNI-SLAN---------PGMSVEKVIYAAKLAGAHD 126
Query: 1486 ---KKPS----------FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
+ LSGG ++++++A A++ +P I+I DE ++ +D ++ +
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1533 VISRLSTRQGKTAVI----LTT 1550
+ ++ +G+T +I L+T
Sbjct: 187 NMHKIC--KGRTVIIIAHRLST 206
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 42/265 (15%)
Query: 1377 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1436
+ F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------IS 102
Query: 1437 YCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVV----MEKLVEFDLLKHAKKPS- 1489
+C Q ++ + T++E+ I GV+ EYR V+ +E+ +
Sbjct: 103 FCSQ-NSWIMPGTIKEN------IIGVSYDEYRYRSVIKACQLEE--DISKFAEKDNIVL 153
Query: 1490 ----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTRQGKT 1544
TLSGG + ++S+A A+ D + +LD P +D K + +L KT
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL--MANKT 211
Query: 1545 AVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLED 1604
IL T M + +I I+ G G+ L+ +F + E
Sbjct: 212 -RILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAER 269
Query: 1605 LCQIIQERVFDIPSQRRSLLDDLEV 1629
I+ E R SL D V
Sbjct: 270 RNSILTE-----TLHRFSLEGDAPV 289
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 38/211 (18%)
Query: 470 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529
+ + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------IS 102
Query: 530 VCPQYDILFPELTVREH---LEMFAVLKGVKEELLESVVA--------EMVDEVGLADKV 578
C Q + P T++E+ + E SV+ E D +
Sbjct: 103 FCSQNSWIMPG-TIKENIIGVSY-------DEYRYRSVIKACQLEEDISKFAE---KDNI 151
Query: 579 NIVVR--ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLIKKIKKGRI 635
+ LSGG + ++SL A+ D+ + +LD P +D + + K+ +
Sbjct: 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 636 ILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+L T M+ ++ D+I I+ GS G+
Sbjct: 212 RILVTSKMEHLKKA-DKILILHEGSSYFYGT 241
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-13
Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 55/309 (17%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A + L+N+ K + + + GE F+G +G GK+T L MI+G E
Sbjct: 2 ASVQLQNVTKAWGEVV------VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIG-----YCPQFDALLEYLTVQEHLELYARIKGVAEYR 1467
T G FI K + +D A R +G Y AL +L+V E++ ++ G +
Sbjct: 56 TSGDLFIGEKRM-NDTPPAERGVGMVFQSY-----ALYPHLSVAENMSFGLKLAGAKKEV 109
Query: 1468 MDDVVME--KLVEFD-LLKHAKKPSFTLSGGNK-RKLSVAI--AMIGDPPIVILDEPSTG 1521
++ V + ++++ LL +KP LSGG + R VAI ++ +P + +LDEP +
Sbjct: 110 INQRVNQVAEVLQLAHLLD--RKPK-ALSGGQRQR---VAIGRTLVAEPSVFLLDEPLSN 163
Query: 1522 MDPIAK-----RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS 1576
+D A R E ISRL R G+T +I TH EA L +I ++ G++ +G
Sbjct: 164 LD--AALRVQMRI--E-ISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 1577 PQHL----KTRF-----G----NFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSL 1623
P L RF G NFL ++V T + V +E + + +P + R +
Sbjct: 218 PLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVE--LPMPNRQQVWLPVESRDV 275
Query: 1624 LDDLEVCIG 1632
+ +G
Sbjct: 276 QVGANMSLG 284
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 7e-07
Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 39/228 (17%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+GD
Sbjct: 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 510 ALVFGKNITADMDEIRKGLGVCP-QYDI--------LFPELTVREHLEMFAV-LKGV-KE 558
+ K + P + + L+P L+V E++ F + L G KE
Sbjct: 60 LFIGEKRMN----------DTPPAERGVGMVFQSYALYPHLSVAENMS-FGLKLAGAKKE 108
Query: 559 ELLESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
+ + V VAE+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D
Sbjct: 109 VINQRVNQVAEV---LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 617 P---YSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANG 659
MR+ I ++ K GR ++ TH EA L D+I ++ G
Sbjct: 166 AALRVQMRIE---ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 57/265 (21%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY--P 1412
+ +++ YP + +V + LTF++ G+ +G NG+GK+T +++ + P
Sbjct: 17 VKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQP 71
Query: 1413 TDGTAFIFGKDIRS-DPKAARRLIGYCPQ----FDALLEYLTVQEHLELYARIKGVAEYR 1467
T G + G+ + D + Q F + +E++ Y
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-----SFRENI-AYGLT------- 118
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDP 1510
ME++ + + F LSGG ++ +++A A+I P
Sbjct: 119 -RTPTMEEITA--VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175
Query: 1511 PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT-----RIGI 1565
++ILD ++ +D + + ++ +T +++ Q L I
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI-------TQQLSLAERAHHILF 228
Query: 1566 MVGGQLRCIGSPQHLKTRFGNFLEL 1590
+ G + G+ L R G + +
Sbjct: 229 LKEGSVCEQGTHLQLMERGGCYRSM 253
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 65/269 (24%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+ + G ++ + + Y N + L TLY ++ AL+G NG+GKST ++L
Sbjct: 8 LAPLNMKGL-VKFQDVSFAYPN-HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 500 VGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 558
L PT G L+ G+ + D + + Q +LF + RE++ + + +
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF-GRSFRENI-AYGLTRTPTM 123
Query: 559 ELLESVVAEM--VDE--VGLADKVNIVV--RA--LSGGMKRKLSLGIALIGDSKVVILDE 610
E + + VA + G + V LSGG ++ ++L ALI +++ILD
Sbjct: 124 EEITA-VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182
Query: 611 PTSGMDPYSMRLTWQLIKKIKK--GRIILLTTH---SMDEAEELGDRIAIMANGSLKCCG 665
TS +D + +L+ + + R +LL T + A I + GS+ G
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA----HHILFLKEGSVCEQG 238
Query: 666 SSLFLKHQYGVGYTLTLVKSAPDASAAAD 694
+ L L + G ++ +AP +AA
Sbjct: 239 THLQLMERGGCYRSMVEALAAPSDAAAHH 267
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 40/237 (16%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1428
++ +TFS+ G +G G GK++ LS + E +G I G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------ 67
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE-------FDL 1481
+ Y PQ A ++ +++E++ L+ ++++ +++ ++
Sbjct: 68 ------VAYVPQ-QAWIQNDSLRENI-LFGC-------QLEEPYYRSVIQACALLPDLEI 112
Query: 1482 LKHAKKPS-----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVIS 1535
L + LSGG K+++S+A A+ + I + D+P + +D + K VI
Sbjct: 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172
Query: 1536 RLSTRQGKTAVILTTHSMNEAQAL--CTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+ KT IL THSM L I +M GG++ +GS Q L R G F E
Sbjct: 173 PKGMLKNKT-RILVTHSM---SYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 51/217 (23%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 531
+ ++ E ++A++G G GKS+ +S L+ + G + G +
Sbjct: 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------------VAYV 71
Query: 532 PQYDILFPELTVREHLEMFAVLKGVK--EELLESVV---AEMVD----------EVGLAD 576
PQ + + ++RE+ +L G + E SV+ A + D E+G +
Sbjct: 72 PQQAWIQND-SLREN-----ILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG--E 123
Query: 577 K-VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK------ 629
K VN LSGG K+++SL A+ ++ + + D+P S +D + + + +
Sbjct: 124 KGVN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK---HIFENVIGPKG 175
Query: 630 IKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ K + +L THSM ++ D I +M+ G + GS
Sbjct: 176 MLKNKTRILVTHSMSYLPQV-DVIIVMSGGKISEMGS 211
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 41/214 (19%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY-- 1411
++ R++ Y ++ + ++F Q F G +G GK+T S++ E +
Sbjct: 1 MLSARHVDFAYDDSEQ-----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQ 53
Query: 1412 PTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
PT G I G+ I + + R IG+ Q D+ + T++E+L Y D
Sbjct: 54 PTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENL-TYG--------LEGD 103
Query: 1471 VVMEKLVEFDLLKHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDPPIV 1513
E L + +L A SF +SGG +++L++A A + +P I+
Sbjct: 104 YTDEDLWQ--VLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161
Query: 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1547
+LDE + +D ++ + + + L +G+T ++
Sbjct: 162 MLDEATASLDSESESMVQKALDSLM--KGRTTLV 193
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 470 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNI-TADMDEI 524
+ N I+A G +G GKST S L+ PT G+ + G+ I ++
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFS----LLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV 582
R +G Q + T+RE+L E+L + + + D++N V
Sbjct: 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133
Query: 583 --R--ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILL 638
R +SGG +++L++ A + + K+++LDE T+ +D S + + + + KGR L+
Sbjct: 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193
Query: 639 TTH---SMDEAEELGDRIAIMANG 659
H ++ +A D+I + G
Sbjct: 194 IAHRLSTIVDA----DKIYFIEKG 213
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 9e-12
Identities = 50/237 (21%), Positives = 89/237 (37%), Gaps = 42/237 (17%)
Query: 1369 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1428
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 1429 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVE-------FDL 1481
I +C Q + + T++E++ ++ D+ +++
Sbjct: 71 ------ISFCSQ-FSWIMPGTIKENI-IFGV-------SYDEYRYRSVIKACQLEEDISK 115
Query: 1482 LKHAKKPS-----FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVIS 1535
TLSGG + ++S+A A+ D + +LD P +D K +
Sbjct: 116 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 175
Query: 1536 RLSTRQGKTAVILTTHSMNEAQAL--CTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
+L KT IL T M + L +I I+ G G+ L+ +F
Sbjct: 176 KL--MANKT-RILVTSKM---EHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 43/214 (20%)
Query: 470 NSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529
+ + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------IS 72
Query: 530 VCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVV---AEMVD----------EVGL 574
C Q+ + P T++E+ ++ GV E SV+ D +G
Sbjct: 73 FCSQFSWIMPG-TIKEN-----IIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG- 125
Query: 575 ADK-VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY-SMRLTWQLIKKIKK 632
+ + LSGG + ++SL A+ D+ + +LD P +D + + K+
Sbjct: 126 -EGGIT-----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 633 GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ +L T M+ ++ D+I I+ GS G+
Sbjct: 180 NKTRILVTSKMEHLKKA-DKILILHEGSSYFYGT 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 37/202 (18%)
Query: 1364 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423
YP +++ + + S+ F + +G +G G+GK+T ++ Y +G I GK+
Sbjct: 27 YPK--QTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKN 82
Query: 1424 IRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL 1482
+ + + R +IG PQ D +L T++ ++ LY ++ D E++++
Sbjct: 83 VNKYNRNSIRSIIGIVPQ-DTILFNETIKYNI-LYGKL---------DATDEEVIK--AT 129
Query: 1483 KHAKKPSF-----------------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525
K A+ F LSGG ++++++A ++ DP IVI DE ++ +D
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 1526 AKRFMWEVISRLSTRQGKTAVI 1547
+ + + L + +T +I
Sbjct: 190 TEYLFQKAVEDLR--KNRTLII 209
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 60/240 (25%), Positives = 120/240 (50%), Gaps = 25/240 (10%)
Query: 433 VEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGK 492
+E+ SL +++ I+ ++ Y K+ N + S+ + AL+GH G+GK
Sbjct: 2 LESFSLTSHEKKFGVN-IEFSDVNFSY-PKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59
Query: 493 STTISMLVGLIP---PTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHLE 548
ST + L+ GD + GKN+ + + IR +G+ PQ ILF E T++ ++
Sbjct: 60 ST----IAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNIL 114
Query: 549 MFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGMKRKLSLGIALIGD 602
+ L EE++++ + + + L K + +V + LSGG ++++++ L+ D
Sbjct: 115 -YGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173
Query: 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEELGDRIAIMANG 659
K+VI DE TS +D + L + ++ ++K R +++ H ++ A + I ++ G
Sbjct: 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSA----ESIILLNKG 229
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 5e-11
Identities = 46/190 (24%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILF 538
Q LAL+G +GAGKST + +L ++G + G++I +R +GV PQ +LF
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 539 PELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGMKRK 592
+ T+ +++ + + +E+ + A + + + + V R LSGG K++
Sbjct: 141 ND-TIADNIR-YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEAEEL 649
+++ ++ +++LDE TS +D + R + K+ R ++ H ++ A
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA--- 255
Query: 650 GDRIAIMANG 659
D+I ++ +G
Sbjct: 256 -DQILVIKDG 264
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK 1429
D + + ++F+V G+ +G +GAGK+T L ++ + G I G+DI
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQA 124
Query: 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME--KLVEFDLLKHAKK 1487
+ R IG PQ D +L T+ +++ Y R+ +D V + H
Sbjct: 125 SLRSHIGVVPQ-DTVLFNDTIADNI-RYGRVTAG-----NDEVEAAAQAAGI----HDAI 173
Query: 1488 PSFT-------------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
+F LSGG K+++++A ++ P I++LDE ++ +D +R + +
Sbjct: 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233
Query: 1535 SRLSTRQGKTAVI 1547
+++ +T ++
Sbjct: 234 AKVC--ANRTTIV 244
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-10
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 36/203 (17%)
Query: 1332 LNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGF 1391
LNE ++ N + +V+ ++ + N+ Y + + FSV+ G
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSF-ENVEFRYFENTDP----VLSGVNFSVKPGSLVAV 374
Query: 1392 LGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTV 1450
LG G+GK+T +++I P G + D+R+ K R I PQ + +L T+
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ-ETVLFSGTI 433
Query: 1451 QEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-----------------TLS 1493
+E+L ++ +D +++VE K A+ F S
Sbjct: 434 KENL----------KWGREDATDDEIVEA--AKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 1494 GGNKRKLSVAIAMIGDPPIVILD 1516
GG K++LS+A A++ P ++ILD
Sbjct: 482 GGQKQRLSIARALVKKPKVLILD 504
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 41/160 (25%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNITA-DMDEIRKGLGVCPQY 534
++A+LG G+GKST L+ LIP P G V ++ + ++R + PQ
Sbjct: 370 SLVAVLGETGSGKST----LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 535 DILFPELTVREHL----------EMFAVLK--------GVKEELLESVVAEMVDEVGLAD 576
+LF T++E+L E+ K E +S V
Sbjct: 426 TVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER--------G 476
Query: 577 KVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 616
N SGG K++LS+ AL+ KV+ILD+ TS +D
Sbjct: 477 GRN-----FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 5e-09
Identities = 72/562 (12%), Positives = 151/562 (26%), Gaps = 150/562 (26%)
Query: 372 LDKVL---PKENGVRYRWNFIFQNCFRRK-KSVIKHHVSSAEVKINKKLSKEKECAFALD 427
+D ++ +G +F K + +++ V F +
Sbjct: 51 IDHIIMSKDAVSGTLR----LF-WTLLSKQEEMVQKFVEEVL---------RINYKFLMS 96
Query: 428 ACEPVVEAISLDMKQ--QEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYE---NQIL 482
+ S+ + ++ D + K Y R L+ L E + +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQP--YLKLRQALLELRPAKNV 153
Query: 483 ALLGHNGAGKSTTISMLVG--LIPPTTGDALVFG------KNITADMDEIRKGLGVCPQY 534
+ G G+GK+ + + + F KN + + + Q
Sbjct: 154 LIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 535 DILFPEL------------TVREHLEMFAVLKGVKEELL-------ESVV---------- 565
D + +++ L K + LL
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 566 -----AEMVDEVGLADKVNIVVRALSGGMKRKLSLGI-ALIGDSKVVILDEPTSGMDPYS 619
++ D + A +I + S + + D + L +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 620 MRL----------TWQLIKKI---KKGRIILLTTHSMDEAE--ELGDRIAIMANGSL--- 661
+ + TW K + K II + + ++ AE ++ DR+++ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 662 --------------------KCCGSSLFLKHQYGVGYTL------TLVKSAPDASAAADI 695
K SL K ++ VK + + I
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 696 V--YRHIPSALCVSEVGTE---------ITFKLPLASSSSFESMFRE-------IESCIR 737
V Y IP ++ I L ++FR +E IR
Sbjct: 450 VDHYN-IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 738 KSVSKVEADATEDTDYLGIESFG--IS---------VTTLEEVFLRVAGCNLDESE--CI 784
+ A + ++ + I V + + FL NL S+ +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICSKYTDL 567
Query: 785 SQRNNLVTLDYVSAESDDQAPK 806
+ + + + E+ Q +
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-07
Identities = 96/652 (14%), Positives = 173/652 (26%), Gaps = 242/652 (37%)
Query: 68 DVKTIMDTNGPYLNDLELGVNII--PTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATE 125
D K + D L+ E+ +II + L F ++Q + +
Sbjct: 34 DCKDVQDMPKSILSKEEID-HIIMSKD---------AVSGTLRLFWTLLSKQE--EMVQK 81
Query: 126 NVEIPPSNLSGTHLSLKQPWTLYSPSNIRMVP----FPTREYTD------DEFQSIIKRV 175
VE L + + L SP I+ TR Y + ++ Q K
Sbjct: 82 FVE--------EVLRINYKF-LMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-- 128
Query: 176 MGVLYLLGFLYPISRLISYSVFEKEQKIREGLY------------MMG----------LK 213
Y +SRL + K+R+ L ++G
Sbjct: 129 ----------YNVSRL------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 214 D---------GIFHLSWFIT------------------------YAAQFAVSSGIITACT 240
IF W + + ++ SS I
Sbjct: 173 SYKVQCKMDFKIF---W-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 241 -----MDSLFKY-------------SDKTVVFTYFFSFG---LSAITLSFFISTFFARAK 279
+ L K + F+ L +T F T F A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKIL--LTTRFKQVTDFLSAA 284
Query: 280 TAVAVGTLSFLGAFFPYYTVNDEAVPMVLKVI----------ASLLSPTAFALGSVNFAD 329
T + P DE ++LK + +P ++ A+
Sbjct: 285 TTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAE 335
Query: 330 YERAHVGLRWSNMWRASSGVNFLVCLLMMLLDTLLYGVIGLYLDKVLPKENGVRYRWNFI 389
R + W N W+ + D L +I L+ + P E + +
Sbjct: 336 SIRDGLA-TWDN-WK------------HVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSV 380
Query: 390 FQNCFRRKKSV-IKHHV--------SSAEV-KINKKLSKEKECAFALDACEPVVEAISLD 439
F S I + ++V + KL K ++L +P IS+
Sbjct: 381 FP------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-----YSLVEKQPKESTISIP 429
Query: 440 MKQQEVDGRCIQIRKLHKV----YATKRGNCCAVNSLQLTLYENQILALLGH-----NGA 490
E+ + LH+ Y + + L + + +GH
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 491 GKSTTISML--------------------VGLIPPTTGDALVFGKNITADMDEIRKGLGV 530
+ T M+ G I T + I +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---------- 537
Query: 531 CPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV 582
P+Y+ L + F L ++E L+ S +++ + L + +
Sbjct: 538 DPKYERLVNA------ILDF--LPKIEENLICSKYTDLL-RIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 45/318 (14%), Positives = 87/318 (27%), Gaps = 73/318 (22%)
Query: 1221 NSLLKNFFRLSPG-FCFADG--------LASLALLRQGMKDKTSDGVFDW----NVTSAS 1267
L + L P DG +A L ++ K +F W N S
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPE 196
Query: 1268 ICYLGCESICYFLLTLGLELLPSHKWTLMTIKEWWKGTRHRLCNTPSSYLEPLL-----Q 1322
+ + Y + H + + RL + Y LL Q
Sbjct: 197 TVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQ 254
Query: 1323 SSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFS 1382
++ + +L ++L + + + + HS+T +
Sbjct: 255 NAKAWNAFNL---------SCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLT 299
Query: 1383 V-QAGECFG-FLGTNG------AGKTT--TLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1432
+ +L T LS+I E + K + D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKL--T 356
Query: 1433 RLIGYCPQFDALLEYLTVQEHLELYARI----KGV-------------AEYRMDDVVMEK 1475
+I L L E+ +++ R+ VV+ K
Sbjct: 357 TIIESS------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 1476 LVEFDLL-KHAKKPSFTL 1492
L ++ L+ K K+ + ++
Sbjct: 411 LHKYSLVEKQPKESTISI 428
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 7e-06
Identities = 56/347 (16%), Positives = 99/347 (28%), Gaps = 121/347 (34%)
Query: 27 SQVKDCLNP---KIKGAVVFHDQGPELFDYSIRLNHTWAFSGFPDVKTIMDTNGPYLNDL 83
+V NP I + D G +D W + TI++++ LN L
Sbjct: 320 REVLTT-NPRRLSIIAESI-RD-GLATWDN-------WKHVNCDKLTTIIESS---LNVL 366
Query: 84 ELGVNIIPTMQYSFSGFLTLQQVLDSFIIFAAQQTGANVATENVEIPPSNLSGTHLSLKQ 143
E P +++ D +F + IP LS +
Sbjct: 367 E------PA---------EYRKMFDRLSVF----------PPSAHIPTILLS----LI-- 395
Query: 144 PWTLYSPSNIRMVPFPTREYTDDEFQSIIKRVMGVLYLLGFLYPISRLISYSVFEKEQKI 203
W + + ++ +L YS+ EK+ K
Sbjct: 396 -WF---------------DVIKSDVMVVVN----------------KLHKYSLVEKQPK- 422
Query: 204 REGLYMMGLKDGIFHLSWFITYAAQFAVSSGIITACTMDSLFKYSDKTV--VFTYFFSF- 260
+ + + +L + ++A+ I+ + F D + YF+S
Sbjct: 423 ESTISIPSI-----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 261 --------------GLSAITLSF-FIS-----TFFARAKTAVAVGTLSFLGAFFPYYTVN 300
+ L F F+ A + + TL L + PY N
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 301 DEAVPMVLKVIASLL---------SPTA----FALGSVNFADYERAH 334
D ++ I L S AL + + A +E AH
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 6e-05
Identities = 57/462 (12%), Positives = 135/462 (29%), Gaps = 135/462 (29%)
Query: 725 FESMFREIESCIRKSVSKVEADATEDTDYLGIESFGISVTTLEEVFLRVAGCNLDESECI 784
FE+ E + + +S E ++ D ++ S+ + EE+ I
Sbjct: 9 FET--GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----------DHII 55
Query: 785 SQRNNLVTLDY---VSAESDDQAPKRISNCKLFGNYKWVFGFIVTVVQRACTLIVAAVLG 841
++ + ++ ++ L NYK+ +++ ++ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQ---RQPSMM 108
Query: 842 FLNFLIKKCCTCCIISRSMFWQHCKALFIKRAVSARRDRKTIVFQLLIPAIFLLVGLLFL 901
+ I R + + +F K VS R + Q L L
Sbjct: 109 TRMY---------IEQRDRLYNDNQ-VFAKYNVS-RLQPYLKLRQAL------------L 145
Query: 902 KLKPHPDMLSVTFTTSNFNPLLSGGGGGGPIPFDLSWPIANEV--SKYIQ----GG--WI 953
+L+P ++ L+ G G G +W +A +V S +Q W+
Sbjct: 146 ELRPAKNV------------LIDGVLGSGK-----TW-VALDVCLSYKVQCKMDFKIFWL 187
Query: 954 ------------QRFKQSSYRFPNAEKALADAVDAAGPTLGPVLLSMSEYLMS-SFNESY 1000
+ ++ Y+ + +D + + + L S +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 1001 QSRYGAIVMDDQNDDGSL-GFTVLHNSSCQHAGPTFINVMNTAILRLATGNRNMTIRTRN 1059
+V+ + + + F + SC+ + + + I +
Sbjct: 248 ------LVLLNVQNAKAWNAFNL----SCK----ILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 1060 HPLPTTQSQQLQRHDLDAFSVSIIISIAFSFIPAS------FAVAIVKEREVKAKQQQLI 1113
H + T + L + + +P ++I+ E +
Sbjct: 294 HSMTLTPDEVK---SL----LLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IR 338
Query: 1114 SGVSVLSYW-------TSTYIWDFISFLFPS-------SCAI 1141
G++ W +T I ++ L P+ ++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 8e-09
Identities = 51/260 (19%), Positives = 123/260 (47%), Gaps = 27/260 (10%)
Query: 425 ALDACEPVVEAISLDMKQQEVDGRC--------IQIRKLHKVYATKRGNCCAVNSLQLTL 476
+ AC+ + +D++ + +G+ + ++ + Y K A++ + ++
Sbjct: 311 GMAACQTLFGL--MDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP--ALSHVSFSI 366
Query: 477 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYD 535
+ + +AL+G +G+GKST ++ +G + G ++ + +R+ + Q
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 536 ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGM 589
LF + T+ ++ A + +E++ ++ E + ++ V+ LSGG
Sbjct: 427 HLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTH---SMDEA 646
++++++ AL+ D+ V+ILDE TS +D S R + +++K + +L+ H ++++A
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 647 EELGDRIAIMANGSLKCCGS 666
D I ++ G + G
Sbjct: 546 ----DEILVVDEGEIIERGR 561
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 1330 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1389
+DL + D ++G VD ++++ Y G + K A+ ++FS+ G+
Sbjct: 322 MDLETERDNGKYEAERVNGEVD-----VKDVTFTYQGKE----KPALSHVSFSIPQGKTV 372
Query: 1390 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYL 1448
+G +G+GK+T ++ + G+ + G D+R RR Q + L
Sbjct: 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLFND 431
Query: 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-----------------T 1491
T+ ++ YA + E++ + + A F +
Sbjct: 432 TIANNI-AYA--------AEGEYTREQIEQ--AARQAHAMEFIENMPQGLDTVIGENGTS 480
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDE 1517
LSGG ++++++A A++ D P++ILDE
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDE 506
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 9e-09
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 1330 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1389
LD ++ D +G ++ RN+ YPG + A+ ++ + AG+
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLE-----FRNVTFTYPGREVP----ALRNINLKIPAGKTV 372
Query: 1390 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYL 1448
+G +G+GK+T S+I+ +G + G D+R + R + Q + L
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ-NVHLFND 431
Query: 1449 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF-----------------T 1491
TV ++ YA R ++ E++ E + A F
Sbjct: 432 TVANNI-AYA--------RTEEYSREQIEE--AARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 1492 LSGGNKRKLSVAIAMIGDPPIVILDE 1517
LSGG ++++++A A++ D PI+ILDE
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDE 506
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 56/255 (21%), Positives = 122/255 (47%), Gaps = 31/255 (12%)
Query: 425 ALDACEPVVEAISLDMKQQEVDGRC--------IQIRKLHKVYATKRGNCCAVNSLQLTL 476
+ AC+ + LD +Q++ +G+ ++ R + Y + A+ ++ L +
Sbjct: 311 GMAACQTLFAI--LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP--ALRNINLKI 366
Query: 477 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYD 535
+ +AL+G +G+GKST S++ G L+ G ++ + +R + + Q
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 536 ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGGM 589
LF + TV ++ + +E++ E+ + + + ++ ++ LSGG
Sbjct: 427 HLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 590 KRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIIL-----LTTHSMD 644
++++++ AL+ DS ++ILDE TS +D S R + +++K R L L+T ++
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST--IE 543
Query: 645 EAEELGDRIAIMANG 659
+A D I ++ +G
Sbjct: 544 QA----DEIVVVEDG 554
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 42/207 (20%)
Query: 1332 LNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGF 1391
++ED D++ I ++ Y + + + S++ GE F
Sbjct: 318 IDEDYDIKNGVGAQPIEIKQGRIDI-DHVSFQYNDNEAP----ILKDINLSIEKGETVAF 372
Query: 1392 LGTNGAGKTTTLSMISGEEY-PTDGTAFIFGKDIRSDPKAA-RRLIGYCPQFDALLEYLT 1449
+G +G GK+T +++I Y T G I G +I+ + R IG Q D +L T
Sbjct: 373 VGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ-DNILFSDT 430
Query: 1450 VQEHLELY-------------ARIKGVAEYRM------DDVVMEKLVEFDLLKHAKKPSF 1490
V+E++ L A++ ++ M D V E+ V
Sbjct: 431 VKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV------------- 476
Query: 1491 TLSGGNKRKLSVAIAMIGDPPIVILDE 1517
LSGG K++LS+A + +PPI+ILDE
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDE 503
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIP----PTTGDALVFGKNI-TADMDEIRKGLGVCPQY 534
+ +A +G +G GKST I+ LIP T+G L+ G NI +R +G+ Q
Sbjct: 368 ETVAFVGMSGGGKSTLIN----LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD 423
Query: 535 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVV--RA--LSGG 588
+ILF + TV+E++ + EE++E+ + + L + V R LSGG
Sbjct: 424 NILFSD-TVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481
Query: 589 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGR 634
K++LS+ + + ++ILDE TS +D S + + + + K R
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 527
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITA-DMDEI-R 525
L L ++ ++ A++G NG+GKST + L G T G GK++ A ++
Sbjct: 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLALSPEDRAG 96
Query: 526 KGLGVCPQYDILFPELTVREHLE--MFAVLKGVKEELLESV-----VAEMVDEVGLADKV 578
+G+ + QY + P ++ + L+ + AV +E L+ + E + + + +
Sbjct: 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED- 155
Query: 579 NIVVRAL----SGG-MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-K 632
++ R++ SGG KR L +A++ + ++ ILDE SG+D ++++ + ++
Sbjct: 156 -LLTRSVNVGFSGGEKKRNDILQMAVL-EPELCILDESDSGLDIDALKVVADGVNSLRDG 213
Query: 633 GRIILLTTH 641
R ++ TH
Sbjct: 214 KRSFIIVTH 222
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 472 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPP----TTGDALVFGKNITA-DMDEI-R 525
+ L + + ++ AL+G NGAGKST +L G P G+ L+ G+NI DE R
Sbjct: 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENILELSPDERAR 79
Query: 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-----VAEMVDEVGLADKVNI 580
KGL + QY + P +T+ L L+ + V + ++ + +
Sbjct: 80 KGLFLAFQYPVEVPGVTIANFLR--LALQAKLGREVGVAEFWTKVKKALELLDWDES--Y 135
Query: 581 VVRAL----SGG-MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGR 634
+ R L SGG KR L + ++ + +LDE SG+D ++++ + + ++
Sbjct: 136 LSRYLNEGFSGGEKKRNEILQLLVL-EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 635 IILLTTH 641
L+ TH
Sbjct: 195 GALVITH 201
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 540 ELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGG------MKRK 592
E+FA K + E + + + + LSGG + +
Sbjct: 12 SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFR 71
Query: 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMD 644
L++ + L G+ ++ILDEPT +D R ++++ K ++L +H +
Sbjct: 72 LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 1448 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNK------RKL 1500
+ E++A + E V ++ ++P LSGG + +L
Sbjct: 13 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRL 72
Query: 1501 SVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1551
++++ + G+ ++ILDEP+ +D +R + ++ R ++ VIL +H
Sbjct: 73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKKIPQ-VILVSH 121
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-06
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 1488 PSFTLSGGNKR------KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1541
P LSGG + +L++++ + G+ ++ILDEP+ +D +R + ++ R ++
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-LKK 303
Query: 1542 GKTAVILTTHS 1552
VIL +H
Sbjct: 304 IPQ-VILVSHD 313
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 533 QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKR- 591
+ ++ +G E++ V + + + LSGG +
Sbjct: 197 AREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIA 256
Query: 592 -----KLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDE 645
+L++ + L G+ ++ILDEPT +D R ++++ K ++L +H +E
Sbjct: 257 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EE 315
Query: 646 AEELGDRI 653
++ D +
Sbjct: 316 LKDAADHV 323
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 31/163 (19%)
Query: 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA- 1431
K + +TF ++ G+ +G G+GKTT ++++ G + G DIR +++
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSF- 1490
R IG Q D +L TV+E+L Y E++ E K F
Sbjct: 428 RSSIGIVLQ-DTILFSTTVKENL-KYGN---------PGATDEEIKE--AAKLTHSDHFI 474
Query: 1491 ----------------TLSGGNKRKLSVAIAMIGDPPIVILDE 1517
LS G ++ L++ A + +P I+ILDE
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE 517
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM--DEIRKGLGVCPQYDIL 537
Q +AL+G G+GK+T +++L+ G LV G +I + +R +G+ Q IL
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLRSSIGIVLQDTIL 440
Query: 538 FPELTVREHLEMFAVLKGVKEELLESVVAEMVDE--VGLADKVNIVVRA----LSGGMKR 591
F TV+E+L+ + EE+ E+ D L + V+ LS G ++
Sbjct: 441 F-STTVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498
Query: 592 KLSLGIALIGDSKVVILDEPTSGMD 616
L++ A + + K++ILDE TS +D
Sbjct: 499 LLAITRAFLANPKILILDEATSNVD 523
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1723 | ||||
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-58 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-55 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-57 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-56 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-54 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-52 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-49 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-47 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-48 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-47 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-47 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-45 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-47 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-46 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-47 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-46 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-47 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-46 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-45 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-42 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-44 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-41 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-41 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-41 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-41 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-40 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-38 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-38 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-37 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-36 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-36 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-34 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-36 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-34 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-36 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-33 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-35 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-34 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 199 bits (507), Expect = 3e-58
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 14/242 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +++LRK K + ++F ++ GE FG +G NGAGKTTTL +IS P+
Sbjct: 3 VVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 56
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G +FGK++ +P R+LI Y P+ + E+L A + ++++V
Sbjct: 57 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L + K T S G RKL +A A++ +P + ILDEP++G+D + R + +++
Sbjct: 117 ATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 176
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN------FL 1588
+ Q +++++H+M E + LC RI ++ G + G+ + LK R+ F
Sbjct: 177 KQA--SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 234
Query: 1589 EL 1590
E+
Sbjct: 235 EV 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 191 bits (486), Expect = 2e-55
Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ ++ L K G + + + E +I L+G NGAGK+TT+ ++ LI P++G
Sbjct: 3 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
VFGKN+ + E+RK + P+ + + E+L A +E +V
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ GL +K+ V S GM RKL + AL+ + ++ ILDEPTSG+D + R +++K+
Sbjct: 119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178
Query: 630 IKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675
+ G IL+++H+M E E L DRIA++ NG++ G+ LK +Y
Sbjct: 179 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 195 bits (498), Expect = 4e-57
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 8/231 (3%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+ L NL K + AV+ L +++ GE LG +G GKTTTL MI+G E P
Sbjct: 5 VEVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 58
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
T+G + +D+ P R I Q A+ ++TV E++ +IK + +D V
Sbjct: 59 TEGRIYFGDRDVTYLP-PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 117
Query: 1473 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
+ + + LSGG +++++VA A++ +P ++++DEP + +D + M
Sbjct: 118 RWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 177
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
I +L + T I TH EA + RI +M GQL IGSP + R
Sbjct: 178 EIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 192 bits (490), Expect = 5e-56
Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 7/219 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ L K + GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL PT G
Sbjct: 7 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+++T + + + + Q ++P +TV E++ +K ++ ++ V
Sbjct: 63 IYFGDRDVT-YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ + + + +N LSGG ++++++ A++ + V+++DEP S +D IKK
Sbjct: 122 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 181
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ K + TH EA +GDRIA+M G L GS
Sbjct: 182 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 220
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 186 bits (474), Expect = 7e-54
Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 510 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
LV G+ +T +++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E++ VGL DK + LSGG K+++++ AL + KV++ DE TS +DP + R +
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
L+K I + G ILL TH MD + + D +A+++NG L +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 180 bits (459), Expect = 7e-52
Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 7/234 (2%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L N+ KV+ G R A+++++ V AG+ +G +G +GAGK+T + ++ E PT
Sbjct: 1 MIKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
Query: 1414 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1469
+G+ + G+++ S+ ARR IG Q LL TV ++ L + + +
Sbjct: 59 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK 118
Query: 1470 DVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1529
V E L L LSGG K+++++A A+ +P +++ DE ++ +DP R
Sbjct: 119 RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1530 MWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+ E++ ++ R G T ++L TH M+ + +C + ++ G+L + + +
Sbjct: 179 ILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 172 bits (437), Expect = 7e-49
Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 7/220 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++++ LH Y G A+ + L + QI+ L+G NGAGK+TT+S + GL+ G
Sbjct: 7 LEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 510 ALVFGKNITADMDEIR--KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 567
+ G++IT + G+ + P+ +FPELTV E+L M A + KE + +
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 122
Query: 568 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLI 627
L +++ + LSGG ++ L++G AL+ K++++DEP+ G+ P + +++I
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 628 KKIKK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+KI + G ILL + A ++ ++ G + G
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 168 bits (426), Expect = 2e-47
Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 1350 VDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE 1409
V + ++ +++L Y A+ + V G+ +G NGAGKTTTLS I+G
Sbjct: 2 VSDIVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55
Query: 1410 EYPTDGTAFIFGKDIRSDPKAARRLIGY--CPQFDALLEYLTVQEHLELYARIKGVAEYR 1467
G G+DI + P +G P+ + LTV E+L + A + E
Sbjct: 56 VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI 115
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
D+ + L + K+ TLSGG ++ L++ A++ P ++++DEPS G+ PI
Sbjct: 116 KRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
++EVI +++ ++G T ++L + A + ++ GQ+ G L
Sbjct: 176 SEVFEVIQKIN-QEGTT-ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 170 bits (432), Expect = 6e-48
Identities = 57/266 (21%), Positives = 130/266 (48%), Gaps = 33/266 (12%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+++ +L K Y G + ++ +AG+ +G++G+GK+T L I+ E P+
Sbjct: 2 KLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 55
Query: 1414 DGTAFIFGKDI--------------RSDPKAARRLIGYCPQFDALLEYLTVQEH-LELYA 1458
+G + G++I ++ + R + Q L ++TV E+ +E
Sbjct: 56 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI 115
Query: 1459 RIKGVAEYRMDDVVMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
++ G++++ + ++ L + + + A+ K LSGG ++++S+A A+ +P +++ DE
Sbjct: 116 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGS- 1576
P++ +DP + ++ + +GKT +++ TH M A+ + + + + G++ G
Sbjct: 176 PTSALDPELVGEVLRIM-QQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 1577 ------PQHLKTRFGNFLELEVKPTE 1596
PQ + + FL+ +K E
Sbjct: 234 EQVFGNPQSPRLQ--QFLKGSLKKLE 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 169 bits (429), Expect = 2e-47
Identities = 51/234 (21%), Positives = 111/234 (47%), Gaps = 21/234 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ + LHK Y + + L +++++G +G+GKST + + L P+ G
Sbjct: 3 LHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 510 ALVFGKNIT--------------ADMDEIRKGLGVCPQYDILFPELTVREH-LEMFAVLK 554
+V G+NI + +R L + Q+ L+ +TV E+ +E +
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 555 GVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 613
G+ + + + +VG+ ++ LSGG ++++S+ AL + V++ DEPTS
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 614 GMDPYSMRLTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+DP + ++++++ ++G+ +++ TH M A + + + G ++ G
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 167 bits (424), Expect = 3e-47
Identities = 52/223 (23%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 510 ALVFGKNIT-----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEELL 561
+ R +G Q L P LT E++E+ + K + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 562 ESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 620
E + L ++ N LSGG ++++++ AL + +++ D+PT +D +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 621 RLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSL 661
QL+KK+ + G+ +++ TH ++ A G+RI + +G +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEV 223
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 162 bits (412), Expect = 1e-45
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I L+N+ K Y G+ A+ ++ +++ GE +G +G+GK+T L++I + PT
Sbjct: 1 MIKLKNVTKTYKMGEE--IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 1414 DGTAFIFGKDI-----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
+G +I K R IG+ Q L+ LT E++EL K
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1469 DDVVMEKLVEFDLL----KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524
++ L + + A LSGG ++++++A A+ +PPI++ D+P+ +D
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1525 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
+ +++ +L+ GKT V++ TH +N A RI + G++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKT-VVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 168 bits (426), Expect = 3e-47
Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ + K + G A++ + +++ + + ++G NG+GKST I+++ G + G
Sbjct: 5 LRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
Query: 510 ALVFGKNITADM--DEIRKGLGVCPQYDILFPELTVREHLEMFAVLK------------- 554
K+IT + G+ Q E+TV E+L + +
Sbjct: 61 VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW 120
Query: 555 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 614
KEE + ++++ + L+ + LSGG + + +G AL+ + K++++DEP +G
Sbjct: 121 IPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180
Query: 615 MDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ P + + ++K KG L+ H +D D + +M NG + G
Sbjct: 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 165 bits (419), Expect = 3e-46
Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 23/246 (9%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I+ N+ K + A+ ++ SV G+ +G NG+GK+T +++I+G
Sbjct: 3 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 56
Query: 1413 TDGTAFIFGKDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHL-------------ELY 1457
+G + KDI + + I Q L+ +TV E+L L+
Sbjct: 57 DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 1458 ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1517
+ E M + + L L + + LSGG + + + A++ +P ++++DE
Sbjct: 117 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 1518 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577
P G+ P ++ + L +G T ++ H ++ + +M GQ+ G
Sbjct: 177 PIAGVAPGLAHDIFNHVLEL-KAKGIT-FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234
Query: 1578 QHLKTR 1583
+
Sbjct: 235 EEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 167 bits (424), Expect = 3e-47
Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
A + L ++ KV+ AV ++ V+ GE LG +G GKTTTL MI+G E P
Sbjct: 2 AGVRLVDVWKVF------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP 55
Query: 1413 TDGTAFIFGKDIRSDPKAARRL-----IGYCPQFDALLEYLTVQEHLELYARIKGVAEYR 1467
+ G +I K + K I Q AL ++TV +++ +++ V
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
+D V E L + + LSGG ++++++ A++ P + ++DEP + +D +
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
M + +L + G T I TH EA + RI +M G L+ +GSP + +
Sbjct: 176 VRMRAELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 164 bits (417), Expect = 3e-46
Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 11/224 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+++ + KV+ G AV + L + + + + LLG +G GK+TT+ M+ GL P+ G
Sbjct: 4 VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 510 ALVFGKNIT-----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 564
+ K + + + + + Q L+P +TV +++ L+ V + ++
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 565 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 624
V E+ + +GL + +N R LSGG +++++LG A++ +V ++DEP S +D
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 625 QLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+KK+++ G + TH EA +GDRIA+M G L+ GS
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 167 bits (423), Expect = 3e-47
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 8/229 (3%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ L+N+ K + V + + GE F+G +G GK+T L MI+G E T
Sbjct: 1 VQLQNVTKAW------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 54
Query: 1415 GTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME 1474
G FI K +D A R +G Q AL +L+V E++ ++ G + ++ V +
Sbjct: 55 GDLFIGEKR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 113
Query: 1475 KLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVI 1534
L + LSGG ++++++ ++ +P + +LDEP + +D + M I
Sbjct: 114 VAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 1535 SRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
SRL R G+T +I TH EA L +I ++ G++ +G P L
Sbjct: 174 SRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 163 bits (414), Expect = 5e-46
Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 7/219 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+GD
Sbjct: 1 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ K + D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 57 LFIGEKRMN-DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D I +
Sbjct: 116 EVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 175
Query: 630 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ K GR ++ TH EA L D+I ++ G + G
Sbjct: 176 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 214
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 162 bits (412), Expect = 1e-45
Identities = 63/235 (26%), Positives = 120/235 (51%), Gaps = 9/235 (3%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P
Sbjct: 2 VRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP 57
Query: 1413 TDGTAFIFGKDIRSDPKAAR----RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1468
+ G + + + S+ K R IG Q AL LT E++ +++ +
Sbjct: 58 STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 1469 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
V E D+ LSG ++++++A A++ DP +++LDEP + +D +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
++ + +R G T +++ +H + A+ R+G++V G+L +G P+ L
Sbjct: 178 SARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 154 bits (390), Expect = 1e-42
Identities = 54/223 (24%), Positives = 113/223 (50%), Gaps = 8/223 (3%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG+
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 510 ALVFGKNITADMDEI----RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 565
+ + ++ I + +G+ Q L+P LT E++ + +E + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 566 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ 625
E+ + + +N R LSG +++++L AL+ D +++LDEP S +D
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 626 LIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
L+K+++ G +L+ +H + + DR+ ++ G L G
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 157 bits (398), Expect = 8e-44
Identities = 62/230 (26%), Positives = 122/230 (53%), Gaps = 12/230 (5%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
+I + +L + + ++ +L+ V++GE F LG GAGKT L +I+G P
Sbjct: 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 1414 DGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G + GKD +D + I + Q +L ++ V+++LE R+K + + + V+
Sbjct: 54 SGRILLDGKD-VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR---VL 109
Query: 1474 EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1533
+ + + + TLSGG ++++++A A++ +P I++LDEP + +DP + E+
Sbjct: 110 DTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169
Query: 1534 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+S L + T V+ TH EA+ + RI +++ G+L +G P+ + +
Sbjct: 170 LSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 149 bits (378), Expect = 3e-41
Identities = 57/219 (26%), Positives = 112/219 (51%), Gaps = 11/219 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I+I L + + ++++L L + + +LG GAGK+ + ++ G P +G
Sbjct: 2 IEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
L+ GK++T D+ + + Q LFP + V+++LE +K +K+ V +
Sbjct: 57 ILLDGKDVT-DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTA 112
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
++ + ++ LSGG +++++L AL+ + K+++LDEP S +DP + +++
Sbjct: 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172
Query: 630 IKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ K +L TH EA + DRIA++ +G L G
Sbjct: 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 150 bits (379), Expect = 1e-41
Identities = 43/209 (20%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++IR L Y + + +T+ + ++ G NG GK+T + + + P G+
Sbjct: 3 LEIRDLSVGYDKP-----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 510 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 569
+ G + +++ + P+ I+ +++V ++L+ A L GVK E + + +
Sbjct: 58 IIYNGV----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--IMDAL 111
Query: 570 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKK 629
+ V + D + LS G R++ L L+ ++++ +LD+P +D S + I +
Sbjct: 112 ESVEVLDLKK-KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 630 I--KKGRIILLTTHSMDEAEELGDRIAIM 656
I +KG +I+ + + D +
Sbjct: 171 ILKEKGIVIISSREELSYC----DVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 147 bits (373), Expect = 8e-41
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1412
+ + +R+L Y K + +T +++ G F G NG GKTT L IS P
Sbjct: 1 SKLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53
Query: 1413 TDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G G I + I + P+ + ++V+++L+ A + GV + + +
Sbjct: 54 LKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--I 107
Query: 1473 MEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1532
M+ L ++L KK LS G R++ +A ++ + I +LD+P +D +K + +
Sbjct: 108 MDALESVEVLDLKKKLGE-LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 1533 VISRLSTRQGKTAVILTTHSMNEAQALCTRIGIM 1566
I + +G +I + + + C +
Sbjct: 167 SILEILKEKGIV-IISSREEL----SYCDVNENL 195
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 149 bits (377), Expect = 6e-41
Identities = 46/240 (19%), Positives = 98/240 (40%), Gaps = 26/240 (10%)
Query: 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411
+ ++ L+++ + + L+ V+AGE +G NGAGK+T L+ ++G
Sbjct: 1 SIVMQLQDVAE----------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT- 49
Query: 1412 PTDGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD 1470
G+ G+ + + Y Q V +L L+ K E
Sbjct: 50 SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--- 106
Query: 1471 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMI-------GDPPIVILDEPSTGMD 1523
+ L + + LSGG +++ +A ++ +++LDEP +D
Sbjct: 107 --NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 1524 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583
+ + +++S L +QG +++++H +N R ++ GG++ G + + T
Sbjct: 165 VAQQSALDKILSAL-CQQGLA-IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 148 bits (374), Expect = 1e-40
Identities = 44/242 (18%), Positives = 97/242 (40%), Gaps = 29/242 (11%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+Q++ + + + L + +IL L+G NGAGKST ++ + G+ G
Sbjct: 4 MQLQDVAESTR--------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 54
Query: 510 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
G+ + A ++ Q V +L + K E ++ ++
Sbjct: 55 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDV 109
Query: 569 VDEVGLADKVNIVVRALSGGMKRKLSLGIALI-------GDSKVVILDEPTSGMDPYSMR 621
+ L DK+ LSGG +++ L ++ ++++LDEP + +D
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 622 LTWQLIKKI-KKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSS--LF----LKHQY 674
+++ + ++G I++++H ++ R ++ G + G + L Y
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAY 229
Query: 675 GV 676
G+
Sbjct: 230 GM 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 142 bits (360), Expect = 2e-38
Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I + ++ Y + + + S++ GE F+G +G GK+T +++I T
Sbjct: 17 IDIDHVSFQYNDNE----APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLEL------YARIKGVAEYR 1467
G I G +I+ + R IG Q D +L TV+E++ L + A+
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMA 131
Query: 1468 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
+ L + + ++ LSGG K++LS+A + +PPI+ILDE ++ +D ++
Sbjct: 132 NAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 190
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587
+ E + L + +T ++ H ++ +I ++ G + G+ + L + G +
Sbjct: 191 SIIQEALDVL--SKDRT-TLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAKQGAY 246
Query: 1588 LEL 1590
L
Sbjct: 247 EHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 141 bits (358), Expect = 4e-38
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I I + Y + + L++ + + +A +G +G GKST I+++ T+G
Sbjct: 17 IDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 510 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAE 567
L+ G NI +R +G+ Q +ILF TV+E++ + EE++E+ +A
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENI-LLGRPTATDEEVVEAAKMAN 132
Query: 568 MVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
D + G +V LSGG K++LS+ + + ++ILDE TS +D S +
Sbjct: 133 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 192
Query: 623 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ + + K R L+ H + D+I ++ NG + G+
Sbjct: 193 IQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGT 235
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (352), Expect = 2e-37
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 13/236 (5%)
Query: 440 MKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISML 499
+ ++G +Q + + Y R + + L TL ++ AL+G NG+GKST ++L
Sbjct: 3 LTPLHLEGL-VQFQDVSFAYPN-RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 500 VGLIPPTTGDALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE 558
L PT G L+ GK + + + + + Q +F +++E++ K E
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTME 119
Query: 559 ELLESVVAEMVDEV------GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPT 612
E+ + V G +V+ LSGG ++ ++L ALI V+ILD+ T
Sbjct: 120 EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDAT 179
Query: 613 SGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
S +D S QL+ + + R +LL T + E D I + G+++ G+
Sbjct: 180 SALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (342), Expect = 4e-36
Identities = 50/243 (20%), Positives = 107/243 (44%), Gaps = 13/243 (5%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ +++ YP + + LTF+++ GE +G NG+GK+T +++ PT
Sbjct: 12 VQFQDVSFAYPNRP---DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G + GK + + + R + Q + + ++QE++ K E V
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 1474 EKLVEFDLL------KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1527
F + LSGG ++ +++A A+I P ++ILD+ ++ +D ++
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 1528 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1587
+ +++ R ++ V+L T ++ + I + GG +R G+ Q L + G +
Sbjct: 188 LQVEQLLYESPERYSRS-VLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKGCY 245
Query: 1588 LEL 1590
+
Sbjct: 246 WAM 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 135 bits (342), Expect = 5e-36
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 13/225 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
++ R + Y + A+ ++ L + + +AL+G +G+GKST S++ G
Sbjct: 14 LEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 510 ALVFGKNITADM-DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV--VA 566
L+ G ++ +R + + Q LF + +A + E +E +A
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI--AYARTEEYSREQIEEAARMA 129
Query: 567 EMVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 621
+D + GL + LSGG ++++++ AL+ DS ++ILDE TS +D S R
Sbjct: 130 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 189
Query: 622 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ +++K R L+ H + E D I ++ +G + G+
Sbjct: 190 AIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 129 bits (326), Expect = 8e-34
Identities = 52/244 (21%), Positives = 112/244 (45%), Gaps = 18/244 (7%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
+ RN+ YPG + A+ ++ + AG+ +G +G+GK+T S+I+ +
Sbjct: 14 LEFRNVTFTYPGRE----VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 69
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDV-- 1471
G + G D+R + R + Q L YAR + + ++++
Sbjct: 70 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNI--AYARTEEYSREQIEEAAR 127
Query: 1472 ---VMEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
M+ + + D L + LSGG ++++++A A++ D PI+ILDE ++ +D +
Sbjct: 128 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 187
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
+R + + L ++ +T ++ H ++ + I ++ G + G+ L + G
Sbjct: 188 ERAIQAALDEL--QKNRT-SLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHGV 243
Query: 1587 FLEL 1590
+ +L
Sbjct: 244 YAQL 247
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 134 bits (340), Expect = 6e-36
Identities = 48/244 (19%), Positives = 102/244 (41%), Gaps = 17/244 (6%)
Query: 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1413
++ R++ Y ++ + ++F Q F G +G GK+T S++ PT
Sbjct: 1 MLSARHVDFAYDDSEQ-----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 1414 DGTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV 1472
G I G+ I + + R IG+ Q A++ T++E+L E +
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLD 114
Query: 1473 MEKLVEFDLLKHAKKPSF------TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526
+ F + + +SGG +++L++A A + +P I++LDE + +D +
Sbjct: 115 LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1527 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1586
+ + + + L +G+T ++ H ++ +I + GQ+ G L
Sbjct: 175 ESMVQKALDSL--MKGRT-TLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATHPL 230
Query: 1587 FLEL 1590
+ +
Sbjct: 231 YAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 130 bits (328), Expect = 2e-34
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 12/224 (5%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
+ R + Y + + N I+A G +G GKST S+L PT G+
Sbjct: 2 LSARHVDFAYDDSEQ---ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 510 ALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKE------ELLE 562
+ G+ I ++ R +G Q + T+RE+L E +L
Sbjct: 59 ITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAF 117
Query: 563 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 622
+ L +V +SGG +++L++ A + + K+++LDE T+ +D S +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 623 TWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ + + KGR L+ H + D+I + G + G
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGK 220
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 134 bits (339), Expect = 9e-36
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 5/203 (2%)
Query: 1378 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY 1437
++ F + + LG GAGK+ L +I+G P G + G DI + RR IG+
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGF 74
Query: 1438 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1497
PQ AL +L+V ++ R E D V E + + + LSGG +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVE--RDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Query: 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1557
+++++A A++ P +++LDEP + +D K + E + + ++ TH + EA
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAA 191
Query: 1558 ALCTRIGIMVGGQLRCIGSPQHL 1580
L + +M+ G++ G + L
Sbjct: 192 MLADEVAVMLNGRIVEKGKLKEL 214
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 130 bits (328), Expect = 2e-34
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 5/188 (2%)
Query: 481 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPE 540
LLG GAGKS + ++ G++ P G+ + G +IT + R+G+G PQ LFP
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT-PLPPERRGIGFVPQDYALFPH 84
Query: 541 LTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALI 600
L+V ++ E + V EM +++G+A ++ LSGG +++++L AL+
Sbjct: 85 LSVYRNIAYGLRNVERVE--RDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV 142
Query: 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK--GRIILLTTHSMDEAEELGDRIAIMAN 658
++++LDEP S +D + + + ++ +++ IL TH + EA L D +A+M N
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 659 GSLKCCGS 666
G + G
Sbjct: 203 GRIVEKGK 210
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 135 bits (342), Expect = 9e-36
Identities = 42/204 (20%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------ 98
Query: 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVV----R 583
+ C Q+ + P T++E++ + + + D A++ N V+
Sbjct: 99 VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 584 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHS 642
LSGG + ++SL A+ D+ + +LD P +D ++ ++ + K+ + +L T
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 643 MDEAEELGDRIAIMANGSLKCCGS 666
M E D+I I+ GS G+
Sbjct: 218 M-EHLRKADKILILHQGSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 128 bits (323), Expect = 3e-33
Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 20/224 (8%)
Query: 1371 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA 1430
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+
Sbjct: 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-------- 98
Query: 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK----HAK 1486
+ +C QF ++ T++E++ + + +
Sbjct: 99 ----VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 1487 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1546
+ TLSGG + ++S+A A+ D + +LD P +D + ++E KT
Sbjct: 154 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC-VCKLMANKT-R 211
Query: 1547 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1590
IL T M E +I I+ G G+ L++ +F
Sbjct: 212 ILVTSKM-EHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 133 bits (335), Expect = 3e-35
Identities = 52/223 (23%), Positives = 111/223 (49%), Gaps = 10/223 (4%)
Query: 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 509
I R + Y ++++ L++ + +++ ++G +G+GKST ++ P G
Sbjct: 2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 510 ALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 568
L+ G ++ AD + +R+ +GV Q ++L ++ +++ + V++ + + +A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 569 VDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623
D + G V LSGG ++++++ AL+ + K++I DE TS +D S +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 624 WQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666
+ + KI KGR +++ H + + DRI +M G + G
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 128 bits (324), Expect = 8e-34
Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%)
Query: 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1414
I RN+R Y V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 2 ITFRNIRFRYKPDS----PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 1415 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM 1473
G I G D+ DP RR +G Q D +L ++ +++ L V + +
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 1474 EKLVEFDLLKHAKKPSF-----TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1528
L+ LSGG ++++++A A++ +P I+I DE ++ +D ++
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 1529 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1580
+ + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 177 VIMRNMHKI--CKGRT-VIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.4 bits (184), Expect = 6e-16
Identities = 20/180 (11%), Positives = 38/180 (21%), Gaps = 25/180 (13%)
Query: 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPEL 541
+ + G G GK+T + +V + + +F
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 542 TVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG 601
+ + VN+ + + A
Sbjct: 63 FFTSKKLVGSY------------------------GVNVQYFEELAIPILERAYREAKKD 98
Query: 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSL 661
KV+I+DE ++ T D L I + L
Sbjct: 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVL 157
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 68.1 bits (165), Expect = 2e-13
Identities = 21/182 (11%), Positives = 40/182 (21%), Gaps = 28/182 (15%)
Query: 1390 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLT 1449
G G GKTT + I + K I +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 1450 VQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509
+ F + + A
Sbjct: 64 FTSK------------------------KLVGSYGVNVQYFEELAIPILERAYREAKKDR 99
Query: 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1569
++I+DE G + + +++ ++ V+ T + L I + G
Sbjct: 100 RKVIIIDEI--GKMELFSKKFRDLVRQIMHDPNVN-VVATIPIRDVH-PLVKEIRRLPGA 155
Query: 1570 QL 1571
L
Sbjct: 156 VL 157
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 0.002
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 1500 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH---SMNEA 1556
L AI P +LDE +D + + I R I+ + ++
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD--LQFIVISLKNTMFEKS 402
Query: 1557 QAL 1559
AL
Sbjct: 403 DAL 405
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1723 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.51 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.51 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.47 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.3 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.15 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.91 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.79 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.45 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.18 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.09 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.94 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.45 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.43 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.28 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.13 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.9 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.86 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.83 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.7 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.6 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.54 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.52 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.49 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.31 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.29 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.2 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.09 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.07 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.87 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.83 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.82 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.75 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.71 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.66 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.6 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.5 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.36 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.36 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.35 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.34 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.29 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.19 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.17 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.09 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.99 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.97 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.9 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.83 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.78 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.73 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.64 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.61 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.49 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.44 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.34 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.22 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.22 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.22 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.0 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.8 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.71 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.7 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.54 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.42 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.41 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.2 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.12 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.07 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.05 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.01 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.95 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.82 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.75 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.73 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.72 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.71 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.7 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.66 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.57 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.53 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.5 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.42 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.35 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.33 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.32 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.31 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.31 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.3 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.27 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.14 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.11 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.07 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.04 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.99 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.88 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 90.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.85 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.8 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.75 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.73 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.63 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.62 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 90.59 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.55 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.5 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.48 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.48 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.32 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.26 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.25 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.18 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.06 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.05 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.02 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.84 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.83 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.79 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.77 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.77 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.71 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.67 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.66 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 89.61 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.43 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 89.41 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.41 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.36 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.22 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.94 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.83 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.78 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.78 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.76 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.73 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 88.68 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 88.62 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.62 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.49 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.43 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.4 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.38 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.31 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.13 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.12 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.09 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.04 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.04 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.01 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 87.89 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 87.86 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.78 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.69 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.6 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.46 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.43 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.31 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.31 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.26 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.22 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.16 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.15 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.14 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.11 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.07 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.04 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.99 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.91 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.87 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 86.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 86.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.75 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.74 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.71 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.68 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 86.49 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.38 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.25 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.23 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.2 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 86.19 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.13 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.13 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.04 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.93 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.69 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.62 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.57 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.55 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.51 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 85.47 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 85.42 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 85.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.29 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 85.13 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.01 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.88 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.81 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.79 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.63 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 84.58 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 84.54 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.52 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 84.46 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 84.37 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 84.29 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 84.26 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.21 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.12 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.12 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.97 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.96 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 83.81 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.78 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.77 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.68 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.68 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.67 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.59 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.59 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.48 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 83.44 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.43 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.39 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.35 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 83.34 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 83.3 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 83.26 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.21 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.95 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.84 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 82.7 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.63 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 82.56 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.44 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.4 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.39 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.36 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 82.28 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 82.28 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.08 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.06 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.9 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 81.8 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 81.74 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.67 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 81.64 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.55 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 81.51 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.47 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.41 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 81.4 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.29 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.25 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.1 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.09 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.03 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.02 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.85 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.62 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.62 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.6 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 80.47 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.45 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.45 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 80.4 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 80.34 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.27 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.07 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=435.55 Aligned_cols=222 Identities=31% Similarity=0.441 Sum_probs=180.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19999689993998756764125434599758809999948999498899999199879951899968508999687605
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~ 1433 (1723)
.|+++||+|+|+ ++.||+|+||+|++||++||+|||||||||+++||+|+++|++|+|.++|.++...+. .++
T Consensus 6 ~I~v~nlsk~yg------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~-~~r 78 (239)
T d1v43a3 6 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDR 78 (239)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGG
T ss_pred EEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCC-CCC
T ss_conf 499987999999------9999813067887998999999999829999999975899987879991641354770-001
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 43998058987999999999999999709990559999999998749952018998998956999999999990699889
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1513 (1723)
+||||||++.+++.+||+||+.+.+++++.++.++++++.++++.++|.+++++++.+||||||||++||+||+.+|++|
T Consensus 79 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iL 158 (239)
T d1v43a3 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 158 (239)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred EEEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 58998003353422209999999998739999999999999998759855660995469999988999976640499824
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1514 lLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
+|||||+||||.+++.+|++|++++++.| +|||++||+|+|+..+||||++|++|++++.|+++++.++
T Consensus 159 llDEPts~LD~~~~~~i~~ll~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 159 LMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 30688666898999899999999987319-8079994899999986999999989999998599999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=430.99 Aligned_cols=223 Identities=29% Similarity=0.437 Sum_probs=152.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHH----
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899968----
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK---- 1429 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~---- 1429 (1723)
.|+++||+|.|+ ++.||+|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++.....
T Consensus 3 ~i~v~nl~k~yg------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 189986999989------99998560668869989999999998099999999648788989899999980356644424
Q ss_pred -HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -7605439980589879999999999999997099905599999999987499520189989989569999999999906
Q 000284 1430 -AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1430 -~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~ 1508 (1723)
..+++|||+||++++++.+||+||+.+..++++.+..++++++.++++.++|.+..++++.+||||||||++||+||+.
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~ 156 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 53225512002212223101166763306877299989999999999987599667629933499999999999999826
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 998899938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1509 ~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
+|++|+|||||+||||.+++.+|+.|+++.++.| +|||++||+|+|+..+||||++|.+|++++.|+++++.++
T Consensus 157 ~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9988982588765698999899999999986369-8899995999999996999999989999998599999828
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=428.86 Aligned_cols=224 Identities=31% Similarity=0.532 Sum_probs=157.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19999689993998756764125434599758809999948999498899999199879951899968508999687605
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~ 1433 (1723)
+|+++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.+.++
T Consensus 2 aI~v~nl~k~yg------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 75 (238)
T d1vpla_ 2 AVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 75 (238)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CEEEEEEEEEEC------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHH
T ss_conf 789995899999------99998062568848979999999999999999999669887888799986724468398872
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 43998058987999999999999999709990559999999998749952018998998956999999999990699889
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1513 (1723)
.+|||||.+.+++.+|+.||+.+++.+++.++.+..+.++++++.++|.+..++++++||||||||+++|+||+++|+++
T Consensus 76 ~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~il 155 (238)
T d1vpla_ 76 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 155 (238)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred HEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 18675001546878667788898998617998999999999998679788885045337998989999999986599988
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 993879999999999999999998741699699994377888997757999998999999559557976118
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1514 lLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~~~ 1585 (1723)
+|||||+||||.+++.+|++|++++ ++| +|||++||+|+|++.+||||++|++|++++.|+++++++++.
T Consensus 156 lLDEPt~gLD~~~~~~i~~~i~~~~-~~g-~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 156 ILDEPTSGLDVLNAREVRKILKQAS-QEG-LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHH-HTT-CEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 7337988979899999999999999-659-989999598999999699999998999999928999986528
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=430.49 Aligned_cols=224 Identities=28% Similarity=0.463 Sum_probs=209.6
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCH-----H
Q ss_conf 30999967999437678411024345788479199998799994799999994899999622999561487218-----9
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM-----D 522 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~-----~ 522 (1723)
..|+++||+|.| |++.||+|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.... .
T Consensus 2 ~~i~v~nl~k~y----g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 77 (240)
T d1g2912 2 AGVRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (240)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred CCEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCC
T ss_conf 818998699998----9999985606688699899999999980999999996487889898999999803566444245
Q ss_pred HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 87235299825888899999999999999950999788999999999993998210632378895689999999997269
Q 000284 523 EIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 602 (1723)
Q Consensus 523 ~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~ 602 (1723)
..|+.+|+|||++.||+.+||+||+.+...+++.+..+.++++.++++.++|.+.+++++.+||||||||++||+||+.+
T Consensus 78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 32255120022122231011667633068772999899999999999875996676299334999999999999998269
Q ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 96866059988999999999999999972-8-9699997179778985348999972987998359778986509
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 603 p~vliLDEPTsGlDp~srr~iw~~l~~~~-~-~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g 675 (1723)
|++++|||||+||||.+++.+|++|++++ + |.|||++||+|+||..+||||++|.+|++++.|++.++..+..
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 988982588765698999899999999986369889999599999999699999998999999859999982899
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=427.75 Aligned_cols=224 Identities=33% Similarity=0.506 Sum_probs=215.6
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCE
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872189872352
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~i 528 (1723)
+|+|+||+|.| +++.||+|+||++++|||+||+|||||||||++++|+|+++|++|+|.++|+++.......|+.+
T Consensus 2 aI~v~nl~k~y----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 2 AVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CEEEEEEEEEE----CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 78999589999----99999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 99825888899999999999999950999788999999999993998210632378895689999999997269968660
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 G~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliL 608 (1723)
|||||.+.+|+.+|+.||+.+++.+++.+..+.++.++++++.++|.+..++++++||||||||+++|+||+++|++++|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illL 157 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 157 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67500154687866778889899861799899999999999867978888504533799898999999998659998873
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHCC
Q ss_conf 59988999999999999999972-896999971797789853489999729879983597789865099
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 676 (1723)
Q Consensus 609 DEPTsGlDp~srr~iw~~l~~~~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g~ 676 (1723)
||||+||||.+++++|+++++++ +|+|||++||+|+|++.+||||++|++|+++..|++.+++++++.
T Consensus 158 DEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~ 226 (238)
T d1vpla_ 158 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226 (238)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 379889798999999999999996599899995989999996999999989999999289999865287
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=434.29 Aligned_cols=222 Identities=28% Similarity=0.414 Sum_probs=209.6
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCC
Q ss_conf 30999967999437678411024345788479199998799994799999994899999622999561487218987235
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 527 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~ 527 (1723)
..|+++||+|.| +++.||+|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++.... ..++.
T Consensus 5 ~~I~v~nlsk~y----g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ 79 (239)
T d1v43a3 5 VEVKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRN 79 (239)
T ss_dssp CCEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGT
T ss_pred CEEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-CCCCE
T ss_conf 749998799999----9999981306788799899999999982999999997589998787999164135477-00015
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 29982588889999999999999995099978899999999999399821063237889568999999999726996866
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVI 607 (1723)
Q Consensus 528 iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vli 607 (1723)
||||||++.||+.+||+||+.+++.+++.++.+++++++++++.++|.+.+++.+.+||||||||+++|+||+.+|++++
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl 159 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 159 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89980033534222099999999987399999999999999987598556609954699999889999766404998243
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 059988999999999999999972-8-969999717977898534899997298799835977898650
Q 000284 608 LDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 608 LDEPTsGlDp~srr~iw~~l~~~~-~-~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~ 674 (1723)
|||||+||||.+|+.+|++|++++ + |+|||++||+|+||..+||||++|.+|++++.|++.++.++.
T Consensus 160 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 160 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=430.82 Aligned_cols=221 Identities=29% Similarity=0.458 Sum_probs=154.9
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCC
Q ss_conf 99996899939987567641254345997588099999489994988999991998799518999685089996876054
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1434 (1723)
Q Consensus 1355 i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~ 1434 (1723)
|+++|++|+|+ ++.||+|+||++++||++||+|||||||||+++||+|+.+|++|+|.++|.++.... ..+++
T Consensus 1 Iev~nv~k~yg------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERG 73 (232)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-GGGTC
T ss_pred CEEEEEEEEEC------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC-HHHCE
T ss_conf 99999999989------999981117788699899999899982999999996587888888999999778886-44432
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 39980589879999999999999997099905599999999987499520189989989569999999999906998899
Q 000284 1435 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVI 1514 (1723)
Q Consensus 1435 iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~ill 1514 (1723)
||||||++.+++.+||+||+.+...++|.++++.++++.++++.++|.++.++++.+||||||||++||+||+++|++|+
T Consensus 74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill 153 (232)
T d2awna2 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 153 (232)
T ss_dssp EEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 22343342026433378897899987599889999999999975788656648965699999999999999703998899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1515 LDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1515 LDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
|||||+||||.+++.+|+.|+++.++.| +|||++||+|+|+..+|||+++|++|++++.|+++++.++
T Consensus 154 lDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 154 LDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 7588878898899899999999987429-8799994899999996999999979999998089999738
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=432.71 Aligned_cols=219 Identities=29% Similarity=0.497 Sum_probs=207.2
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEE
Q ss_conf 99996799943767841102434578847919999879999479999999489999962299956148721898723529
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG 529 (1723)
|+++||+|.| +.+.||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++.. ....|+.||
T Consensus 1 Iev~nv~k~y----g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~-~~~~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND-TPPAERGVG 75 (232)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTT-SCGGGTCEE
T ss_pred CEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCC-CCHHHCEEE
T ss_conf 9999999998----99999811177886998999998999829999999965878888889999997788-864443222
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 98258888999999999999999509997889999999999939982106323788956899999999972699686605
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLD 609 (1723)
||||++.||+.+||+||+.+...+++.++++.++++.++++.++|.+..++.+.+||||||||+++|+||+.+|++++||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD 155 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 155 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEE
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 34334202643337889789998759988999999999997578865664896569999999999999970399889975
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 998899999999999999997-2-896999971797789853489999729879983597789865
Q 000284 610 EPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 610 EPTsGlDp~srr~iw~~l~~~-~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||+||||.+++.+|++|+++ + .|+|||++||+|+||..+||||++|.+|++++.|++.++.++
T Consensus 156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 888788988998999999999874298799994899999996999999979999998089999738
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=422.92 Aligned_cols=227 Identities=26% Similarity=0.462 Sum_probs=179.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CH---H
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899-96---8
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DP---K 1429 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~---~ 1429 (1723)
+|+++||+|.|+++. +...||+|+||+|++||++||+|||||||||++++|.|+.+|++|+|.++|.++.. +. .
T Consensus 1 mi~v~nlsk~y~~~~--~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78 (240)
T ss_dssp CEEEEEEEEEEECSS--CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHH
T ss_pred CEEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHH
T ss_conf 979982799969998--148986150578869979999899989888999987588636677328867685208755511
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 76054399805898799999999999999970999055999999999874995201899899895699999999999069
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~ 1509 (1723)
..|++|||+||++.+++.+||+||+.+..+++|.+++++++++.++++.++|.+++++++.+||||||||++||+||+.+
T Consensus 79 ~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~ 158 (240)
T d3dhwc1 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (240)
T ss_dssp HHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCC
T ss_conf 55416643022522279964999999999984999899999999999976990355489434999999899986401058
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 98899938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1510 p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
|++|+|||||+||||.+++.++++|++++++.| .|||++||+|+++..+|||+++|.+|++++.|+++++.++
T Consensus 159 P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~ 231 (240)
T d3dhwc1 159 PKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231 (240)
T ss_dssp CSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 986874465565898885679999999986469-7899983899999986999999979999998799999728
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=425.99 Aligned_cols=225 Identities=26% Similarity=0.446 Sum_probs=184.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCH----H
Q ss_conf 199996899939987567641254345997588099999489994988999991998799518999685089996----8
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP----K 1429 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~----~ 1429 (1723)
.|+++||+|.|++ ++..||+|+||+|++||++||+|||||||||+++||.|+++|++|+|.++|.++.... .
T Consensus 3 ~i~v~nlsk~y~~----g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECC----CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 8999757999889----998998040789879989999989998099999999758688874599999995137311153
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 76054399805898799999999999999970999055999999999874995201899899895699999999999069
Q 000284 1430 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1509 (1723)
Q Consensus 1430 ~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~ 1509 (1723)
..+++|||+||++++++.+||+||+.+..+.++.+++++++++.++++.++|++++++++.+||||||||++||+||+.+
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~ 158 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 12045147730433466665777766556761379999999999998665917666489545999998589987577604
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 98899938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1510 p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
|++|+|||||+||||.+++.++++|+++.++.| .|||++||+|+++.++|||+++|++|++++.|+|+++.++
T Consensus 159 P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g-~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 661454478667998998899899999986359-8799997999999996999999989999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=424.25 Aligned_cols=226 Identities=31% Similarity=0.439 Sum_probs=211.7
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC----CHHHH
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872----18987
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDEI 524 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~----~~~~~ 524 (1723)
.|+++||+|+|..+.+...||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|+++.. +....
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 23529982588889999999999999995099978899999999999399821063237889568999999999726996
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~ 604 (1723)
|+.+|++||+..||+.+||+||+.+...+.+.++++.++++.++++.+||.+.+++.+.+||||||||++||+||+.+|+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 160 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 41664302252227996499999999998499989999999999997699035548943499999989998640105898
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 866059988999999999999999972-8-969999717977898534899997298799835977898650
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 605 vliLDEPTsGlDp~srr~iw~~l~~~~-~-~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~ 674 (1723)
+++|||||+||||.+++.+|++|++++ + |.|+|++||+|++|..+||||++|.+|++++.|++.++.++.
T Consensus 161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P 232 (240)
T d3dhwc1 161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232 (240)
T ss_dssp EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 687446556589888567999999998646978999838999999869999999799999987999997289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=419.37 Aligned_cols=218 Identities=28% Similarity=0.513 Sum_probs=169.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19999689993998756764125434599758809999948999498899999199879951899968508999687605
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~ 1433 (1723)
+|+++||+|+|++ .||+|+||+|++||++||+|||||||||++++|+|+.+|++|+|.++|.++.... ..++
T Consensus 1 mi~v~nlsk~y~~-------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~~r 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH 72 (229)
T ss_dssp CEEEEEEEEECSS-------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHH
T ss_pred CEEEEEEEEEECC-------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC-HHHH
T ss_conf 9899989999499-------7884337898799899999899982999999996476888788999567346521-6574
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 43998058987999999999999999709990559999999998749952018998998956999999999990699889
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1513 (1723)
+|||+||++.+++.+||+||+.+..++++.+.. +++.++++.+++.+..++++.+||||||||++||+||+++|++|
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iL 149 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCE
T ss_conf 056151211117466577888887764055389---99999999825655575895547999840140304344367714
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1514 lLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
+|||||+||||.+++.+|++|+++.++.| .|||++||+|+|+..+||||++|.+|++++.|+++++.++
T Consensus 150 llDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 150 LLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 43478767998999999999999986479-6899974999999996999999979999998699999868
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=421.59 Aligned_cols=224 Identities=24% Similarity=0.417 Sum_probs=210.1
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCC----HHHH
Q ss_conf 099996799943767841102434578847919999879999479999999489999962299956148721----8987
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITAD----MDEI 524 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~----~~~~ 524 (1723)
.|+++||+|+|+. +.+.||+|+||++++||+++|+|||||||||++++|+|+++|++|+|+++|.++... ....
T Consensus 3 ~i~v~nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEEEEEEECC--CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHH
T ss_conf 8999757999889--99899804078987998999998999809999999975868887459999999513731115312
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 23529982588889999999999999995099978899999999999399821063237889568999999999726996
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 525 r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~ 604 (1723)
|+++||+||++.||+.+||+||+.+..+.++.++.++++++.++++.++|.+..++.+.+||||||||++||+||+.+|+
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ 160 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 04514773043346666577776655676137999999999999866591766648954599999858998757760466
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 866059988999999999999999972-8-969999717977898534899997298799835977898650
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 605 vliLDEPTsGlDp~srr~iw~~l~~~~-~-~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~ 674 (1723)
+++|||||+||||.+++.+|++|++++ + |.|+|++||+|+||..+||||++|.+|++++.|++.++.+..
T Consensus 161 llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 145447866799899889989999998635987999979999999969999999899999986999998689
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=417.81 Aligned_cols=217 Identities=26% Similarity=0.461 Sum_probs=201.8
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCE
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872189872352
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~i 528 (1723)
.|+++||+|.|+ + .||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.++.. ....|+.+
T Consensus 1 mi~v~nlsk~y~----~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~-~~~~~r~i 74 (229)
T d3d31a2 1 MIEIESLSRKWK----N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHDI 74 (229)
T ss_dssp CEEEEEEEEECS----S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT-SCHHHHTC
T ss_pred CEEEEEEEEEEC----C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CCHHHHCC
T ss_conf 989998999949----9-78843378987998999998999829999999964768887889995673465-21657405
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 99825888899999999999999950999788999999999993998210632378895689999999997269968660
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 G~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliL 608 (1723)
||+||++.||+.+||+||+.+...+++.+.. +++.++++.+++.+..++.+.+||||||||+++|+||+.+|++++|
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLll 151 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL 151 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEE
T ss_conf 6151211117466577888887764055389---9999999982565557589554799984014030434436771443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-H-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 5998899999999999999997-2-8969999717977898534899997298799835977898650
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKI-K-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 609 DEPTsGlDp~srr~iw~~l~~~-~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~ 674 (1723)
||||+||||.+++.+|++|+++ + .|.|||++||+|+||..+||||++|.+|+++++|++.++.++.
T Consensus 152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 47876799899999999999998647968999749999999969999999799999986999998689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=412.95 Aligned_cols=222 Identities=28% Similarity=0.410 Sum_probs=190.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHH-
Q ss_conf 6419999689993998756764125434599758809999948999498899999199879951899968508999687-
Q 000284 1352 NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKA- 1430 (1723)
Q Consensus 1352 ~~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~- 1430 (1723)
+.+|+++||+|.|+ ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 d~~Lev~~l~k~yg------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~ 77 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp SEEEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred CEEEEEEEEEEEEC------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
T ss_conf 60799961899989------988883025788899799999999985999999996788888038984244344660888
Q ss_pred -HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -6054399805898799999999999999970999055999999999874-99520189989989569999999999906
Q 000284 1431 -ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAKKPSFTLSGGNKRKLSVAIAMIG 1508 (1723)
Q Consensus 1431 -~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~lSgG~krrl~iA~al~~ 1508 (1723)
.+..++|+||+..+++.+||+||+.+.+..+. .....++.+++.++.+ ++.+.+++++++||||||||+++|+||++
T Consensus 78 ~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 887423556765545776369999998887327-8889999999999874176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99889993879999999999999999998741699699994377888997757999998999999559557976
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKT 1582 (1723)
Q Consensus 1509 ~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~ 1582 (1723)
+|++|+|||||+||||.+++.+|++|+++++ +| +|||++||+|+|++.+||||++|++|++++.|+++++.+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g-~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EG-TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 9987400398867999999999999999996-89-989999588999999699999998999999848999842
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=410.27 Aligned_cols=220 Identities=29% Similarity=0.471 Sum_probs=199.1
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH--HHH
Q ss_conf 309999679994376784110243457884791999987999947999999948999996229995614872189--872
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMD--EIR 525 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~--~~r 525 (1723)
..++++||+|.| |.+.||+|+||++++|||++|+||||||||||+++|+|+++|++|+|.++|.++..... ..|
T Consensus 5 ~~Lev~~l~k~y----g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 5 IVLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEEEE----CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 079996189998----9988883025788899799999999985999999996788888038984244344660888887
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 35299825888899999999999999950999788999999999993-99821063237889568999999999726996
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV-GLADKVNIVVRALSGGMKRKLSLGIALIGDSK 604 (1723)
Q Consensus 526 ~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~ 604 (1723)
..++++||+..+|+.+||+||+.+.+..+. +....+++++++++.+ ++.+..++.+.+||||||||+++|+||+.+|+
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 423556765545776369999998887327-8889999999999874176888758543389999999999999982998
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 866059988999999999999999972-89699997179778985348999972987998359778986
Q 000284 605 VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 672 (1723)
Q Consensus 605 vliLDEPTsGlDp~srr~iw~~l~~~~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~ 672 (1723)
+++|||||+||||.+++.+|++|++++ +|+|||++||+|+|+..+||||++|.+|++++.|++.++.+
T Consensus 160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 740039886799999999999999999689989999588999999699999998999999848999842
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=402.81 Aligned_cols=222 Identities=22% Similarity=0.391 Sum_probs=174.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCC------
Q ss_conf 19999689993998756764125434599758809999948999498899999199879951899968508999------
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD------ 1427 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~------ 1427 (1723)
.|+++||+|.|+ .+.||+||||+|++||++||+|||||||||++++|+|+.+|++|+|.++|.++...
T Consensus 2 ~Lev~nl~k~yg------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYG------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 699997899989------99988150668869979999989998299999999747667899779999993367752000
Q ss_pred --------HHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHH
Q ss_conf --------6876054399805898799999999999999-9709990559999999998749952-01899899895699
Q 000284 1428 --------PKAARRLIGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1428 --------~~~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~-~~~g~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lSgG~k 1497 (1723)
....+++|||+||++.+++.+|+.|++.+.. ..++.++.+..+++.++++.++|.+ ..++.+.+||||||
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~ 155 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 155 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHH
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHH
T ss_conf 02351767999745448998332314110102136565787629998999999999999829952443068220567788
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999906998899938799999999999999999987416996999943778889977579999989999995595
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 rrl~iA~al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~ 1577 (1723)
||++||+||+.+|++|+|||||+||||.+++.++++|+++++ +| +|||++||+|+++..+||||++|.+|++++.|++
T Consensus 156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~ 233 (258)
T d1b0ua_ 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233 (258)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CC-CCEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 898999998439987885245556887888899876554103-68-8338994899999986999999979999998499
Q ss_pred HHHHHH
Q ss_conf 579761
Q 000284 1578 QHLKTR 1583 (1723)
Q Consensus 1578 ~~l~~~ 1583 (1723)
+++.++
T Consensus 234 ~ev~~~ 239 (258)
T d1b0ua_ 234 EQVFGN 239 (258)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999838
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=401.06 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=204.7
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC---------
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872---------
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA--------- 519 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~--------- 519 (1723)
.|+++||+|.| |...||+|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++..
T Consensus 2 ~Lev~nl~k~y----g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 77 (258)
T d1b0ua_ 2 KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77 (258)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred EEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCC
T ss_conf 69999789998----99998815066886997999998999829999999974766789977999999336775200002
Q ss_pred -----CHHHHHCCEEEECCCCCCCCCCCHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHH
Q ss_conf -----1898723529982588889999999999999-995099978899999999999399821-063237889568999
Q 000284 520 -----DMDEIRKGLGVCPQYDILFPELTVREHLEMF-AVLKGVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRK 592 (1723)
Q Consensus 520 -----~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~-~~lkg~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSGG~krk 592 (1723)
.....|+.+|++||++.+++.+||.|++.+. ...++.+..+.++.+.++++.++|.+. .++.+.+||||||||
T Consensus 78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QR 157 (258)
T d1b0ua_ 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 157 (258)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred CCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHH
T ss_conf 35176799974544899833231411010213656578762999899999999999982995244306822056778889
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 999999726996866059988999999999999999972-8969999717977898534899997298799835977898
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 593 LsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk 671 (1723)
+++|+||+.+|++++|||||+||||.+++.+|++|++++ +|+|||++||+|++|..+||||++|.+|++++.|++.++.
T Consensus 158 v~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 158 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 89999984399878852455568878888998765541036883389948999999869999999799999984999998
Q ss_pred HHH
Q ss_conf 650
Q 000284 672 HQY 674 (1723)
Q Consensus 672 ~~~ 674 (1723)
.+.
T Consensus 238 ~~P 240 (258)
T d1b0ua_ 238 GNP 240 (258)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 389
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=401.24 Aligned_cols=216 Identities=25% Similarity=0.445 Sum_probs=104.8
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-C---HHHH-
Q ss_conf 9999679994376784110243457884791999987999947999999948999996229995614872-1---8987-
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D---MDEI- 524 (1723)
Q Consensus 450 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~---~~~~- 524 (1723)
|+++||+|.|+.+.+...||+|+||++++||+++|+|||||||||++++|+|+.+|++|+|+++|.++.. + ....
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 235299825888899999999999999950---99978899999999999399821-06323788956899999999972
Q 000284 525 RKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEELLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 525 r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lk---g~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSGG~krkLsiA~Ali 600 (1723)
|+.|||+||++.|++.+||+||+.+...++ +.+..+..+++.++++.++|.++ .+..+.+||||||||++||+||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~ 161 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA 161 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880238999999999875652
Q ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHH-HC-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 699686605998899999999999999997-28-9699997179778985348999972987998359
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KK-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGS 666 (1723)
Q Consensus 601 g~p~vliLDEPTsGlDp~srr~iw~~l~~~-~~-~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs 666 (1723)
.+|++++|||||+||||.+++.+|++|+++ ++ |+|||++||+|++|. +||||++|.+|++++.|+
T Consensus 162 ~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~-~~drv~~m~~G~Iv~~g~ 228 (230)
T d1l2ta_ 162 NNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVEREEK 228 (230)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHT-TSSEEEEEETTEEEEEEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH-HCCEEEEEECCEEEEECC
T ss_conf 2788899468765469899999999999999843999999878889998-699899998999999525
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=399.48 Aligned_cols=220 Identities=26% Similarity=0.445 Sum_probs=196.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHH--
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899-9687--
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA-- 1430 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~-- 1430 (1723)
+|+++||+|.|+.+. ....||+|+||+|++||++||+|||||||||+++||+|+.+|++|+|+++|.++.. +..+
T Consensus 1 mI~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (230)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCC
T ss_conf 989990799948998--208987133778849979999889999821655750688777766269999985768855512
Q ss_pred -H-CCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHH
Q ss_conf -6-054399805898799999999999999970---9990559999999998749952-018998998956999999999
Q 000284 1431 -A-RRLIGYCPQFDALLEYLTVQEHLELYARIK---GVAEYRMDDVVMEKLVEFDLLK-HAKKPSFTLSGGNKRKLSVAI 1504 (1723)
Q Consensus 1431 -~-~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~---g~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lSgG~krrl~iA~ 1504 (1723)
. +++|||+||++.+++.+||+||+.+...++ +.+..+..+++.++++.++|.+ .+++++.+||||||||++||+
T Consensus 79 ~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 31255577880412417686688877578887224789999999999998876242345534880238999999999875
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 9906998899938799999999999999999987416996999943778889977579999989999995595
Q 000284 1505 AMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1505 al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~ 1577 (1723)
||+.+|++|+|||||+||||.+++.+|++|+++.++.| +|||++||+|+++ ++|||+++|.+|+++++|++
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC-CEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC-CEEEEECCCHHHH-HHCCEEEEEECCEEEEECCC
T ss_conf 65227888994687654698999999999999998439-9999987888999-86998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=404.54 Aligned_cols=222 Identities=22% Similarity=0.312 Sum_probs=178.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHH-
Q ss_conf 41999968999399875676412543459975880999994899949889999919987995189996850899-9687-
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKA- 1430 (1723)
Q Consensus 1353 ~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~- 1430 (1723)
.+|+++||+|.|+ .+.||+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+.+
T Consensus 3 ~iL~v~nlsk~yg------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (254)
T d1g6ha_ 3 EILRTENIVKYFG------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76 (254)
T ss_dssp EEEEEEEEEEEET------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEEEC------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHH
T ss_conf 6699977899979------9688712179988997999999999849999999977976887379999996640569999
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 605439980589879999999999999997-------------0999055999999999874995201899899895699
Q 000284 1431 ARRLIGYCPQFDALLEYLTVQEHLELYARI-------------KGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNK 1497 (1723)
Q Consensus 1431 ~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~-------------~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~k 1497 (1723)
.+..|||+||++.+++.+|+.||+.+.... ....+....+++.++++.+++.+.+++++++||||||
T Consensus 77 ~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred HHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 98338725776424788742321430133303450456654213532899999999998761963020595356991888
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999906998899938799999999999999999987416996999943778889977579999989999995595
Q 000284 1498 RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1577 (1723)
Q Consensus 1498 rrl~iA~al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~ 1577 (1723)
||+++|+||+.+|++|+|||||+||||.+++.+|++|++++ ++| +|||++||+|+|+..+||||++|++|++++.|++
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g-~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKG-ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTT-CEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECH
T ss_conf 89999999975927232439765699999999999999999-789-9899994769999986999999969989999668
Q ss_pred HHHHH
Q ss_conf 57976
Q 000284 1578 QHLKT 1582 (1723)
Q Consensus 1578 ~~l~~ 1582 (1723)
+++.+
T Consensus 235 ~e~~~ 239 (254)
T d1g6ha_ 235 EEEIK 239 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=401.70 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=199.3
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHH-HH
Q ss_conf 309999679994376784110243457884791999987999947999999948999996229995614872-1898-72
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE-IR 525 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~-~r 525 (1723)
..++++||+|.| +.+.||+|+||++++|||+||+|||||||||++++|+|+++|++|+|.++|.++.. ...+ .+
T Consensus 3 ~iL~v~nlsk~y----g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (254)
T d1g6ha_ 3 EILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78 (254)
T ss_dssp EEEEEEEEEEEE----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEE----CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHH
T ss_conf 669997789997----9968871217998899799999999984999999997797688737999999664056999998
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 35299825888899999999999999950-------------99978899999999999399821063237889568999
Q 000284 526 KGLGVCPQYDILFPELTVREHLEMFAVLK-------------GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 592 (1723)
Q Consensus 526 ~~iG~cpQ~~~L~~~lTV~EhL~~~~~lk-------------g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krk 592 (1723)
..+|++||.+.+++.+||+||+.+....+ ....++..+++.++++.+++.+..++++.+||||||||
T Consensus 79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL 158 (254)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred HCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHHHH
T ss_conf 33872577642478874232143013330345045665421353289999999999876196302059535699188889
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 999999726996866059988999999999999999972-8969999717977898534899997298799835977898
Q 000284 593 LSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLK 671 (1723)
Q Consensus 593 LsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk 671 (1723)
+++|+||+.+|++++|||||+||||.+++.+|++|++++ +|+|||++||+|+|+..+||||++|.+|++++.|++.++.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99999997592723243976569999999999999999978998999947699999869999999699899996689986
Q ss_pred H
Q ss_conf 6
Q 000284 672 H 672 (1723)
Q Consensus 672 ~ 672 (1723)
+
T Consensus 239 ~ 239 (254)
T d1g6ha_ 239 K 239 (254)
T ss_dssp H
T ss_pred H
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=392.48 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=184.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19999689993998756764125434599758809999948999498899999199879951899968508999687605
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~ 1433 (1723)
.+++ ++.|+|+ ++. + |+||++. +|++||+|||||||||++++|+|+++|++|+|.++|.++.... ..++
T Consensus 2 ~l~v-~~~k~~g------~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-~~~r 70 (240)
T d2onka1 2 FLKV-RAEKRLG------NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERR 70 (240)
T ss_dssp CEEE-EEEEEET------TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-TTTS
T ss_pred EEEE-EEEEEEC------CEE-E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCC-HHHC
T ss_conf 7999-9999989------999-9-9999749-9799999799980999999997399989628999999988699-8992
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 43998058987999999999999999709990559999999998749952018998998956999999999990699889
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1513 (1723)
+|||+||++++++.+||+||+.+. +++.++.+.++++.++++.++|.+..++++.+||||||||+++|+||+++|++|
T Consensus 71 ~ig~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~il 148 (240)
T d2onka1 71 GIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred CCEEECCCHHHCCCCHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 852252314435220155766653--233677889999999998638375665794448999989999987775167706
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9938799999999999999999987416996999943778889977579999989999995595579761
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1514 lLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
+|||||+||||.+++.+|+.|++++++.| +|||++||+|+|+..+|||+++|++|++++.|+++++.+.
T Consensus 149 llDEPts~LD~~~~~~i~~~i~~l~~~~g-~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 149 LLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 75286555887999999999999987439-7699981899999996999999989999999069998329
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=390.96 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=193.9
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEE
Q ss_conf 99996799943767841102434578847919999879999479999999489999962299956148721898723529
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLG 529 (1723)
Q Consensus 450 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG 529 (1723)
+++ ++.|.|+ ... + |+||++. +|+++|+|||||||||++++|+|+++|++|+|.++|.|+... ...|+.||
T Consensus 3 l~v-~~~k~~g----~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~-~~~~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLG----NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGIG 73 (240)
T ss_dssp EEE-EEEEEET----TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCCB
T ss_pred EEE-EEEEEEC----CEE-E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCC-CHHHCCCE
T ss_conf 999-9999989----999-9-9999749-979999979998099999999739998962899999998869-98992852
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 98258888999999999999999509997889999999999939982106323788956899999999972699686605
Q 000284 530 VCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILD 609 (1723)
Q Consensus 530 ~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLD 609 (1723)
|+||++.||+.+||+||+.|. +++.++.+.++++.++++.+||.+.+++.+.+||||||||+++|+||+.+|++++||
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD 151 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred EECCCHHHCCCCHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 252314435220155766653--233677889999999998638375665794448999989999987775167706752
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9988999999999999999972-8-96999971797789853489999729879983597789865
Q 000284 610 EPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 610 EPTsGlDp~srr~iw~~l~~~~-~-~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~ 673 (1723)
|||+||||.+++.+|++++++. + |.|||++||+|+||..+||||++|++|+++++|++.++.+.
T Consensus 152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 865558879999999999999874397699981899999996999999989999999069998329
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=366.49 Aligned_cols=223 Identities=26% Similarity=0.389 Sum_probs=152.2
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHCC
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872-18987235
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~~ 527 (1723)
.|+++|+++.|+.+. .+.+|+|+||++++||+++++|+|||||||++++|+|+++|++|+|+++|.++.. +....|+.
T Consensus 11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred EEEEEEEEEECCCCC-CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHHH
T ss_conf 699999899889999-9976744389984998999999999849999999861437876899889985311013788877
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 299825888899999999999999950999788999-----999999993--9982106323788956899999999972
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLES-----VVAEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 528 iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGG~krkLsiA~Ali 600 (1723)
+||+||++.+|+. |++||+.+....+. ...+..+ ...+.++.+ ++....+.....||||||||++||+||+
T Consensus 90 i~~v~Q~~~lf~~-tv~eni~~g~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 90 VAAVGQEPQVFGR-SLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp EEEECSSCCCCSS-BHHHHHHCSCSSCC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCCCC-CHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 6540456500276-34655454210130-278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 6996866059988999999999999999972--89699997179778985348999972987998359778986509
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 601 g~p~vliLDEPTsGlDp~srr~iw~~l~~~~--~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g 675 (1723)
.+|++++||||||+||+.+++.++++|.++. .++|+|++||+++.+.. ||||++|++|++++.|++.+|.++-|
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aDrI~vl~~G~iv~~Gt~~eLl~~~~ 243 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIREGGTHQQLMEKKG 243 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 68707871675765685368999999999765069899999597999985-99999998999999889999985975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=363.46 Aligned_cols=219 Identities=24% Similarity=0.426 Sum_probs=155.6
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHCCE
Q ss_conf 9999679994376784110243457884791999987999947999999948999996229995614872-189872352
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~~i 528 (1723)
|+++|+++.|+. +...+++|+||++++||++|++|+|||||||++++|+|+++|++|+|.++|.|+.. +..+.|+.+
T Consensus 2 I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 2 ITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred EEEEEEEEEECC--CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 299999999089--996037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHC-----CCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99825888899999999999999950999788999999--999993-----99821063237889568999999999726
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA--EMVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIG 601 (1723)
Q Consensus 529 G~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~--~~l~~~-----~L~~~~~~~~~~LSGG~krkLsiA~Alig 601 (1723)
||+||++.+|+. |++||+.+... ..+.+++....+ .+.+.+ ++....+.....||||||||+++|+||+.
T Consensus 80 ~~v~Q~~~lf~~-Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 80 GVVLQDNVLLNR-SIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp EEECSSCCCTTS-BHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCC-CCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 898244655784-00035223575--543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHH
Q ss_conf 9968660599889999999999999999728969999717977898534899997298799835977898650
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 674 (1723)
Q Consensus 602 ~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~ 674 (1723)
+|++++||||||+||+.+++.+++.|+++.+++|+|++||+++.+. .||||++|++|++++.|++.+|.++.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHST
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6513556477655598999999999999858998999978899998-49999999899999988999998299
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=357.53 Aligned_cols=222 Identities=25% Similarity=0.410 Sum_probs=163.5
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHCC
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872-18987235
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~~ 527 (1723)
.|+++||++.|+.+ ...+|+|+||++++||+++++|+|||||||++++|+|+++|++|+|.++|.++.. +....|+.
T Consensus 13 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 13 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEECCC--CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHE
T ss_conf 79999889992999--9763533289985999999999999859999999862168884689878801211106654206
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 29982588889999999999999995099978899999-----9999993--9982106323788956899999999972
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIALI 600 (1723)
Q Consensus 528 iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v-----~~~l~~~--~L~~~~~~~~~~LSGG~krkLsiA~Ali 600 (1723)
+||+||++.+|+. |+++++.+. .....+.+++.+.. .+.++.+ |+....+.....||||||||++||+||+
T Consensus 91 i~~v~Q~~~l~~~-ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 91 VALVSQNVHLFND-TVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-CHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8799502544786-202433205-72208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 699686605998899999999999999997289699997179778985348999972987998359778986509
Q 000284 601 GDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 601 g~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g 675 (1723)
.+|++++||||||+||+.+++.+++.|+++++++|+|++||+++.+. .||||++|++|+++..|++.+|.++.+
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~~~ 242 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 49988995164445898899999999987522788999988799998-599999998999999889999986893
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=360.12 Aligned_cols=225 Identities=21% Similarity=0.354 Sum_probs=189.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899-968760
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~~~ 1432 (1723)
.|+++|+++.|++. .++.+++|+||+|++||++|++|||||||||++++|+|+++|++|+|.++|.++.. +....|
T Consensus 11 ~I~~~nvsf~Y~~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CEEEEEEEECCTTS---TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred EEEEEEEEEECCCC---CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 69999989988999---999767443899849989999999998499999998614378768998899853110137888
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54399805898799999999999999970999055999-----999999874--99520189989989569999999999
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDD-----VVMEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~a 1505 (1723)
+++||+||++.+++ .|++||+.+..... .......+ ...+.++.+ ++....++....||||||||++||||
T Consensus 88 ~~i~~v~Q~~~lf~-~tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFG-RSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCC-CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 77654045650027-63465545421013-02788999999998999998561211136751676689547048998604
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 90699889993879999999999999999998741699699994377888997757999998999999559557976118
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1506 l~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~~~ 1585 (1723)
|+.+|+|++|||||++||+.+++.+++.|.++.++.+ +|||++||+++.++ .||||++|++|++++.|++++|.++-+
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~-~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~~~ 243 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS-RSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKKG 243 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG-CEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 4568707871675765685368999999999765069-89999959799998-599999998999999889999985975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=369.32 Aligned_cols=214 Identities=24% Similarity=0.391 Sum_probs=123.7
Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHCCE
Q ss_conf 9999679994376784110243457884791999987999947999999948999996229995614872-189872352
Q 000284 450 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGL 528 (1723)
Q Consensus 450 i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~~i 528 (1723)
|+++||++.|+. .+.+++|+||++++||+++++|||||||||++++|+|+++|++|+|.++|.++.. +....|+.+
T Consensus 2 le~knvsf~Y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 2 LSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp EEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEECCC---CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHE
T ss_conf 799988998799---98414225899859999999999999799999999996098987798899884424678887436
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-------CCCCC----CCCCCCHHHHHHHHHHH
Q ss_conf 99825888899999999999999950999788999999999993998-------21063----23788956899999999
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-------DKVNI----VVRALSGGMKRKLSLGI 597 (1723)
Q Consensus 529 G~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~-------~~~~~----~~~~LSGG~krkLsiA~ 597 (1723)
||+||++.+|+. |++||+.+.... ..... ++.+.++..++. +..++ ....||||||||+++|+
T Consensus 79 ~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 79 GFVSQDSAIMAG-TIRENLTYGLEG-DYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (242)
T ss_dssp CEECCSSCCCCE-EHHHHTTSCTTS-CSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEECCCCCCCCC-CHHHHEECCCCC-CCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 797566545785-345430124455-54235----677899999755542037421015236878987999999999999
Q ss_pred HHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9726996866059988999999999999999972896999971797789853489999729879983597789865
Q 000284 598 ALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 598 Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~ 673 (1723)
||+.+|++++||||||+||+.+++.+++.|+++++++|+|++||+++.+.. ||||++|++|++++.|++.+|.++
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHHHC
T ss_conf 985299899965886556988999998878887179989999787999984-999999989999999999999868
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=355.67 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=178.2
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHCC
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872-18987235
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 527 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~~ 527 (1723)
.|+++|+++.|+.. ...+++|+||++++||+++++|+|||||||++++|+|+++|++|+|.++|.|+.. +....|+.
T Consensus 16 ~I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 16 RIDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CEEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEEECCC--CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHE
T ss_conf 79999889995999--9760644389983998999988999809999999971278630001539987530788886341
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCCHHHHHHHHHH
Q ss_conf 2998258888999999999999999509997889999999999939982-----------10632378895689999999
Q 000284 528 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLAD-----------KVNIVVRALSGGMKRKLSLG 596 (1723)
Q Consensus 528 iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGG~krkLsiA 596 (1723)
+|||||++.+|+. ||+||+.+... .... +++.+.++.+++.+ ........||||||||+++|
T Consensus 94 i~~v~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 94 IGLVQQDNILFSD-TVKENILLGRP--TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCS--SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCC-CHHHHHHCCCC--CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHH
T ss_conf 4565101568998-79999851586--7999----999999999697999973624201033388898499999999999
Q ss_pred HHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 9972699686605998899999999999999997289699997179778985348999972987998359778986509
Q 000284 597 IALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 675 (1723)
Q Consensus 597 ~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~~g 675 (1723)
+||+.+|++++||||||+||+.+++.+++.|.++++++|+|++||+++.+. .||||++|++|++++.|++.+|.++.+
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~~~~ 244 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQG 244 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTTS
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 998559989998376544797799999999998753888999968999998-599999998999999889999986884
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=356.09 Aligned_cols=216 Identities=21% Similarity=0.359 Sum_probs=180.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899-968760
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~~~ 1432 (1723)
+|+++|+++.|++ .+.+++|+||++++||++|++|||||||||++++|+|+++|++|+|.++|.++.. +....|
T Consensus 1 mle~knvsf~Y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 75 (242)
T d1mv5a_ 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (242)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEECCC-----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHH
T ss_conf 9799988998799-----98414225899859999999999999799999999996098987798899884424678887
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCCHHHHHHHH
Q ss_conf 543998058987999999999999999709990559999999998749952-----------018998998956999999
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----------HAKKPSFTLSGGNKRKLS 1501 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lSgG~krrl~ 1501 (1723)
++|||+||++.+++. |++||+.+.... ...... +.+.++..++.+ ........||||||||++
T Consensus 76 ~~i~~v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~ 149 (242)
T d1mv5a_ 76 SQIGFVSQDSAIMAG-TIRENLTYGLEG-DYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (242)
T ss_dssp TTCCEECCSSCCCCE-EHHHHTTSCTTS-CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred HHEEEECCCCCCCCC-CHHHHEECCCCC-CCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 436797566545785-345430124455-542356----77899999755542037421015236878987999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999069988999387999999999999999999874169969999437788899775799999899999955955797
Q 000284 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1502 iA~al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~ 1581 (1723)
+||||+.+|+|++|||||++||+.+++.+++.|+++. ++ +|||++||+++.+.. ||||++|++|++++.|++++|.
T Consensus 150 iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl 225 (242)
T d1mv5a_ 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KG-RTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELV 225 (242)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TT-SEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CC-CEEEEEECCHHHHHH-CCEEEEEECCEEEEECCHHHHH
T ss_conf 9999852998999658865569889999988788871--79-989999787999984-9999999899999999999998
Q ss_pred HHC
Q ss_conf 611
Q 000284 1582 TRF 1584 (1723)
Q Consensus 1582 ~~~ 1584 (1723)
++.
T Consensus 226 ~~~ 228 (242)
T d1mv5a_ 226 ATH 228 (242)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 689
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=344.46 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=188.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899-968760
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~~~ 1432 (1723)
-|+++|+++.|+++ ...+|+|+||.|++||++||+|||||||||++++|+|+++|++|+|.++|.++.. +....+
T Consensus 13 ~I~~~nvsf~Y~~~----~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 13 DLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEEECCC----CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 79999889992999----97635332899859999999999998599999998621688846898788012111066542
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5439980589879999999999999997099905599999-----9999874--99520189989989569999999999
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV-----MEKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIA 1505 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~a 1505 (1723)
+++||+||++.++. .|+++|+.+. ......+.++.+.. .+.++.+ ++.....+....||||||||++||||
T Consensus 89 ~~i~~v~Q~~~l~~-~ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 89 NQVALVSQNVHLFN-DTVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HTEEEECSSCCCCS-SBHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCC-CCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 06879950254478-6202433205-722089999999999981799997355441014348889849999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 90699889993879999999999999999998741699699994377888997757999998999999559557976118
Q 000284 1506 MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 1585 (1723)
Q Consensus 1506 l~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~~~ 1585 (1723)
|+.+|+|++|||||++||+.+++.+++.|+++. ++ +|||++||+++.++ .||||++|++|++++.|++++|.++.+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~~~~ 242 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQ--KN-RTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHG 242 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TT-SEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 954998899516444589889999999998752--27-88999988799998-599999998999999889999986893
Q ss_pred C
Q ss_conf 9
Q 000284 1586 N 1586 (1723)
Q Consensus 1586 ~ 1586 (1723)
.
T Consensus 243 ~ 243 (253)
T d3b60a1 243 V 243 (253)
T ss_dssp S
T ss_pred H
T ss_conf 9
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=348.66 Aligned_cols=219 Identities=25% Similarity=0.441 Sum_probs=183.6
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHCC
Q ss_conf 999968999399875676412543459975880999994899949889999919987995189996850899-9687605
Q 000284 1355 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARR 1433 (1723)
Q Consensus 1355 i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~~~~ 1433 (1723)
|+++|+++.|+.+ .+.+++|+||++++||++|++|||||||||++++|+|+++|++|+|.++|.++.. +....|+
T Consensus 2 I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 77 (241)
T d2pmka1 2 ITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77 (241)
T ss_dssp EEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEEEEEEEEECCC----CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHC
T ss_conf 2999999990899----960374248998499999999999998999999997357888889999999944002465535
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4399805898799999999999999970999055999999-----999874--995201899899895699999999999
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVM-----EKLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAM 1506 (1723)
Q Consensus 1434 ~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~al 1506 (1723)
+||||||++.+++ .|++||+.+... .....++..... +.+..+ ++....+.....||||||||++|||||
T Consensus 78 ~i~~v~Q~~~lf~-~Ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 78 QVGVVLQDNVLLN-RSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp HEEEECSSCCCTT-SBHHHHHCTTST--TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-CCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2889824465578-400035223575--5438889999999755788876320134432787886698898987544344
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHC
Q ss_conf 069988999387999999999999999999874169969999437788899775799999899999955955797611
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1584 (1723)
Q Consensus 1507 ~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~~ 1584 (1723)
+.+|+|++|||||++||+.+++.+++.|+++. ++ +|+|++||+++.+. .||||++|++|++++.|++++|.++-
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG-RTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TT-SEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHHST
T ss_pred HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 41651355647765559899999999999985--89-98999978899998-49999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=341.41 Aligned_cols=217 Identities=25% Similarity=0.406 Sum_probs=184.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHHC
Q ss_conf 1999968999399875676412543459975880999994899949889999919987995189996850899-968760
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAAR 1432 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~~~ 1432 (1723)
.|+++|++++|+++ ...+++|+||+|++||+++++|||||||||++++|+|+++|++|+|.++|.++.. +....|
T Consensus 16 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 16 RIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEEECCC----CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 79999889995999----97606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCCHHHHHHHH
Q ss_conf 543998058987999999999999999709990559999999998749952-----------018998998956999999
Q 000284 1433 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLK-----------HAKKPSFTLSGGNKRKLS 1501 (1723)
Q Consensus 1433 ~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lSgG~krrl~ 1501 (1723)
+++|||||++.+++ .|++||+.+... ... ++++.+.++..++.+ ........||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~-~Ti~eNi~~g~~--~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~ 164 (255)
T d2hyda1 92 NQIGLVQQDNILFS-DTVKENILLGRP--TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 164 (255)
T ss_dssp HTEEEECSSCCCCS-SBHHHHHGGGCS--SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred HEEEEEECCCCCCC-CCHHHHHHCCCC--CCC----HHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf 41456510156899-879999851586--799----99999999996979999736242010333888984999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999069988999387999999999999999999874169969999437788899775799999899999955955797
Q 000284 1502 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1502 iA~al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~ 1581 (1723)
+||||+.+|++++|||||++||+.+++.+++.|+++. ++ +|+|++||+++.+. .||||++|++|++++.|++++|.
T Consensus 165 iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~-~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl 240 (255)
T d2hyda1 165 IARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KD-RTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELI 240 (255)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TT-SEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CC-CEEEEEECCHHHHH-HCCEEEEEECCEEEEECCHHHHH
T ss_conf 9999855998999837654479779999999999875--38-88999968999998-59999999899999988999998
Q ss_pred HHCC
Q ss_conf 6118
Q 000284 1582 TRFG 1585 (1723)
Q Consensus 1582 ~~~~ 1585 (1723)
++.+
T Consensus 241 ~~~~ 244 (255)
T d2hyda1 241 AKQG 244 (255)
T ss_dssp HTTS
T ss_pred HCCC
T ss_conf 6884
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=344.49 Aligned_cols=211 Identities=21% Similarity=0.338 Sum_probs=163.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCC-CHHHH
Q ss_conf 41999968999399875676412543459975880999994899949889999919987995189996850899-96876
Q 000284 1353 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAA 1431 (1723)
Q Consensus 1353 ~~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~-~~~~~ 1431 (1723)
.+++++|+.+.| +++++||+|++||++||+|||||||||++++|+|+. |++|+|.++|.++.. ...+.
T Consensus 2 ~il~~~dv~~~~----------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 2 IVMQLQDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEEECCTT----------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEEECCCCCC----------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHH
T ss_conf 599998741571----------555888899489899999899980999999994887-995599999999986998999
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---
Q ss_conf 05439980589879999999999999997099905599999999987499520189989989569999999999906---
Q 000284 1432 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIG--- 1508 (1723)
Q Consensus 1432 ~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~--- 1508 (1723)
+...+|++|........++.+++.++.. ++...+.+.++++.+++.+..++++.+||||||||+++|+||+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHCEEEECCCCCCCCCCHHHHHHHCCC-----HHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 8640245121357744209887641001-----46689999999986598767676844569988999999999985171
Q ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
Q ss_conf ----9988999387999999999999999999874169969999437788899775799999899999955955797
Q 000284 1509 ----DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLK 1581 (1723)
Q Consensus 1509 ----~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~ 1581 (1723)
+|++++|||||+||||.++..++++|++++ ++| +|||++||+|+++..+|||+++|++|++++.|+++++.
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~-~~g-~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALC-QQG-LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHH-HTT-CEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH-HCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 3389988999718777789899999999999998-679-99999967799999979999999799899988999981
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=341.02 Aligned_cols=209 Identities=19% Similarity=0.309 Sum_probs=185.1
Q ss_pred CEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC-CHHHHHC
Q ss_conf 309999679994376784110243457884791999987999947999999948999996229995614872-1898723
Q 000284 448 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 526 (1723)
Q Consensus 448 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~-~~~~~r~ 526 (1723)
..++++++++.| +++++||++.+||+++|+|||||||||++++|+|+. |++|+|.++|.++.. ...+.+.
T Consensus 2 ~il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~ 72 (231)
T d1l7vc_ 2 IVMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 72 (231)
T ss_dssp EEEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHH
T ss_pred EEEEEECCCCCC--------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHH
T ss_conf 599998741571--------555888899489899999899980999999994887-99559999999998699899986
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----
Q ss_conf 529982588889999999999999995099978899999999999399821063237889568999999999726-----
Q 000284 527 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIG----- 601 (1723)
Q Consensus 527 ~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig----- 601 (1723)
..++.+|........++++.+.++.. ....++.++++++.+++.++.++.+.+||||||||+++|+|++.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~ 147 (231)
T d1l7vc_ 73 HRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 147 (231)
T ss_dssp HEEEECSCCCCCSSCBHHHHHHHHCS-----CTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred HCEEEECCCCCCCCCCHHHHHHHCCC-----HHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 40245121357744209887641001-----4668999999998659876767684456998899999999998517133
Q ss_pred --CCCEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
Q ss_conf --996866059988999999999999999972-896999971797789853489999729879983597789
Q 000284 602 --DSKVVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFL 670 (1723)
Q Consensus 602 --~p~vliLDEPTsGlDp~srr~iw~~l~~~~-~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~L 670 (1723)
+|++++|||||+||||.++..+++++++++ +|+|||++||+|+++..+||||++|++|++++.|++.++
T Consensus 148 ~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev 219 (231)
T d1l7vc_ 148 NPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219 (231)
T ss_dssp CTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 899889997187777898999999999999986799999996779999997999999979989998899998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=329.20 Aligned_cols=191 Identities=23% Similarity=0.377 Sum_probs=138.5
Q ss_pred CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHH
Q ss_conf 11024345788479199998799994799999994899999622999561487218987235299825888899999999
Q 000284 466 CCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVRE 545 (1723)
Q Consensus 466 ~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~E 545 (1723)
.++|+|+||++++||+++++|||||||||++++|+|+++|++|+|.++| .++|+||++.+|+. ||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCSE-EHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC------------EEEEEECCCCCCCC-EEEC
T ss_conf 7677375999859999999989998299999999579747882899999------------99998164302676-0321
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH---HHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHH
Q ss_conf 9999999509997889999999---99993998210----6323788956899999999972699686605998899999
Q 000284 546 HLEMFAVLKGVKEELLESVVAE---MVDEVGLADKV----NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 618 (1723)
Q Consensus 546 hL~~~~~lkg~~~~~~~~~v~~---~l~~~~L~~~~----~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~ 618 (1723)
|+.+.. .......++.++. ......+.+.. +....+||||||||+++|+||+.+|++++|||||++|||.
T Consensus 116 ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 116 NIIFGV---SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHTTTS---CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 420333---45605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred HHHHHHHH-HHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 99999999-99972896999971797789853489999729879983597789865
Q 000284 619 SMRLTWQL-IKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 673 (1723)
Q Consensus 619 srr~iw~~-l~~~~~~rtiiltTH~mdEa~~l~DrI~Im~~G~l~~~Gs~~~Lk~~ 673 (1723)
+++.+++. +...++++|+|++||+++.+. .||||++|++|++++.|++.+|.+.
T Consensus 193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 193 TEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 999999999988628999999925289998-5999999989999998789999605
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-44 Score=318.25 Aligned_cols=196 Identities=24% Similarity=0.366 Sum_probs=139.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCC
Q ss_conf 19999689993998756764125434599758809999948999498899999199879951899968508999687605
Q 000284 1354 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1433 (1723)
Q Consensus 1354 ~i~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~ 1433 (1723)
.|+++||++.|+ +.+++|+||++++||++||+|||||||||++++|+|+++|++|+|.++|.++. +.+.
T Consensus 2 ~lev~~ls~~y~-------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~ 70 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKG 70 (200)
T ss_dssp EEEEEEEEEESS-------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGG
T ss_pred EEEEEEEEEEEC-------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH----HHCC
T ss_conf 599998999939-------92884208898599899999999971999999996620567788999989626----7367
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 43998058987999999999999999709990559999999998749952018998998956999999999990699889
Q 000284 1434 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIV 1513 (1723)
Q Consensus 1434 ~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~il 1513 (1723)
+++|+||+..+++.+|++|++.+.+.+++.... ++++.+.++.+++.+ .++++++||||||||+++|+|++.+|+++
T Consensus 71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~ll 147 (200)
T d1sgwa_ 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIY 147 (200)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 089995013578882899999999975488637--999999998748856-30126868971888899999886499899
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC
Q ss_conf 9938799999999999999999987416996999943778889977579999989
Q 000284 1514 ILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1568 (1723)
Q Consensus 1514 lLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~ 1568 (1723)
+|||||+|||+.+++.+++.|.++.++++ ++|+.++|++ ++||++.+|.+
T Consensus 148 llDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 148 VLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSCC----TTSSEEEEGGG
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECHH----HHCCHHHHEEE
T ss_conf 98686201699999999999999986799-9999991625----44161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.3e-44 Score=313.83 Aligned_cols=194 Identities=22% Similarity=0.362 Sum_probs=169.4
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCE
Q ss_conf 09999679994376784110243457884791999987999947999999948999996229995614872189872352
Q 000284 449 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 528 (1723)
Q Consensus 449 ~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~i 528 (1723)
-|+++||++.|. +.+++|+||++.+||+++|+|||||||||++++|+|+++|++|+|.++|.++. ..+..+
T Consensus 2 ~lev~~ls~~y~-----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS-----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGE
T ss_pred EEEEEEEEEEEC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH----HHCCCE
T ss_conf 599998999939-----92884208898599899999999971999999996620567788999989626----736708
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 99825888899999999999999950999788999999999993998210632378895689999999997269968660
Q 000284 529 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVIL 608 (1723)
Q Consensus 529 G~cpQ~~~L~~~lTV~EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliL 608 (1723)
+++||+..+++.+|++|++.+.+.+.+.... ++++.+.++.+++.+. ++.+.+||||||||+++|+|++.+|++++|
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llll 149 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 149 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9995013578882899999999975488637--9999999987488563-012686897188889999988649989998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHHCCEEEEEEC
Q ss_conf 59988999999999999999972-8-96999971797789853489999729
Q 000284 609 DEPTSGMDPYSMRLTWQLIKKIK-K-GRIILLTTHSMDEAEELGDRIAIMAN 658 (1723)
Q Consensus 609 DEPTsGlDp~srr~iw~~l~~~~-~-~rtiiltTH~mdEa~~l~DrI~Im~~ 658 (1723)
||||+||||.+++.+|+.|.+.. + +.+||.++|++ .+||++.+|++
T Consensus 150 DEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 6862016999999999999999867999999991625----44161234010
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-44 Score=319.24 Aligned_cols=192 Identities=24% Similarity=0.382 Sum_probs=155.1
Q ss_pred CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 41254345997588099999489994988999991998799518999685089996876054399805898799999999
Q 000284 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1452 (1723)
Q Consensus 1373 ~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~lTv~e 1452 (1723)
+.+++|+||+|++||++||+|||||||||++++|+|+++|++|+|.++| +++|+||++.+++ .|++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------RVSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------CEEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC------------EEEEEECCCCCCC-CEEEC
T ss_conf 7677375999859999999989998299999999579747882899999------------9999816430267-60321
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH-----HHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 9999999709990559999999-----99874--9952018998998956999999999990699889993879999999
Q 000284 1453 HLELYARIKGVAEYRMDDVVME-----KLVEF--DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1525 (1723)
Q Consensus 1453 ~l~~~~~~~g~~~~~~~~~~~~-----~l~~~--~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GLDp~ 1525 (1723)
|+.+... ..+......... .+..+ ++....++...+||||||||+++|+||+.+|+|++|||||++|||.
T Consensus 116 ni~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 116 NIIFGVS---YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHTTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred CCCCCCC---CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHH
T ss_conf 4203334---5605799999997769999846123323555542377999999999999998696351333855448989
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 9999999999987416996999943778889977579999989999995595579761
Q 000284 1526 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1583 (1723)
Q Consensus 1526 ~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~l~~~gs~~~l~~~ 1583 (1723)
+++.+++.+.... ..+ +|+|++||+++.+. .||||++|++|++++.|++++|.+.
T Consensus 193 ~~~~i~~~~~~~~-~~~-~tvi~itH~~~~l~-~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 193 TEEQVFESCVCKL-MAN-KTRILVTSKMEHLR-KADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp HHHHHHHHCCCCC-TTT-SEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCC-CEEEEEECHHHHHH-HCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9999999999886-289-99999925289998-5999999989999998789999605
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.51 E-value=8.1e-17 Score=128.33 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=81.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCC----CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999489994988999991998799518999685089996876054399805898----799999999999999970999
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDA----LLEYLTVQEHLELYARIKGVA 1464 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~----l~~~lTv~e~l~~~~~~~g~~ 1464 (1723)
++|.||||+||||++++|+|.++|+.|.+.+.+.+..... .+.++..+... .....+..+... ..+ .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~- 75 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSSKFFTSKKL-VGS-YGV- 75 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEETTCCCSSE-ETT-EEE-
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHC-
T ss_conf 9999899938999999998148888646998771328888----765311233667778875411345544-302-303-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 05599999999987499520189989989569999999999906998899938799999999999999999987416996
Q 000284 1465 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1544 (1723)
Q Consensus 1465 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~ 1544 (1723)
+.....+++|++++..+++++..+|+++++|||. .++...+.+++.+.++....+ .
T Consensus 76 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~--~~~~~~~~~~~~l~~~l~~~~-~ 131 (178)
T d1ye8a1 76 ---------------------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIG--KMELFSKKFRDLVRQIMHDPN-V 131 (178)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCS--TTGGGCHHHHHHHHHHHTCTT-S
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC--CCCHHHHHHHHHHHHHHCCCC-C
T ss_conf ---------------------7625665320137899999974099742302777--310045799999998750579-7
Q ss_pred EEEEECCCHHHHHHHCCEEEEEECCEEEEEC
Q ss_conf 9999437788899775799999899999955
Q 000284 1545 AVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1575 (1723)
Q Consensus 1545 tiilttH~m~e~e~l~dri~il~~G~l~~~g 1575 (1723)
++++++|..+ ...+|+++..+.+|+++..+
T Consensus 132 ~il~~~h~~~-~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 132 NVVATIPIRD-VHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp EEEEECCSSC-CSHHHHHHHTCTTCEEEECC
T ss_pred EEEEEECCHH-HHHHHCEEEEEECCEEEEEC
T ss_conf 8999974477-89863659987199999989
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=4.5e-13 Score=102.60 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCE
Q ss_conf 99899895699999999999----06998899938799999999999999999987416996999943778889977579
Q 000284 1487 KPSFTLSGGNKRKLSVAIAM----IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1562 (1723)
Q Consensus 1487 ~~~~~lSgG~krrl~iA~al----~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dr 1562 (1723)
+....+|||+|..+++|..+ ..++++++||||+++|||..++.+-+.|.++. .. ++-+|++||+.+-++ .+|+
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~-~~Q~I~iTH~~~~~~-~ad~ 404 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NP-DLQFIVISLKNTMFE-KSDA 404 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BT-TBEEEEECSCHHHHT-TCSE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CC-CCEEEEEECCHHHHH-HCCC
T ss_conf 34333223047999999999995479997799968877789999999999999972-89-988999958789997-3661
Q ss_pred EEEE
Q ss_conf 9999
Q 000284 1563 IGIM 1566 (1723)
Q Consensus 1563 i~il 1566 (1723)
....
T Consensus 405 ~~~V 408 (427)
T d1w1wa_ 405 LVGV 408 (427)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 7999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.47 E-value=3.2e-16 Score=124.23 Aligned_cols=152 Identities=16% Similarity=0.068 Sum_probs=101.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECC-----CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998799994799999994899999622999561487218987235299825-----88889999999999999995099
Q 000284 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQ-----YDILFPELTVREHLEMFAVLKGV 556 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ-----~~~L~~~lTV~EhL~~~~~lkg~ 556 (1723)
.+|.|||||||||+++.++|.++|+.|.+.+.+.+..... ...++..+ ...+... +..+...+ +
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~- 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KRTGFRIITTEGKKKIFSSK-FFTSKKLV-----G- 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------CCEEEEEETTCCEEEEEET-TCCCSSEE-----T-
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----H-
T ss_conf 9999899938999999998148888646998771328888----76531123366777887541-13455443-----0-
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH-HC-CC
Q ss_conf 97889999999999939982106323788956899999999972699686605998899999999999999997-28-96
Q 000284 557 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKI-KK-GR 634 (1723)
Q Consensus 557 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~-~~-~r 634 (1723)
+ ...+.....+++|++++.++++++..+|+++++|||... +...+..++.+.+. +. +.
T Consensus 72 -~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 72 -S-----------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp -T-----------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTS
T ss_pred -H-----------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCCCC
T ss_conf -2-----------------303762566532013789999997409974230277731--00457999999987505797
Q ss_pred EEEEECCCHHHHHHHCCEEEEEECCEEEEEC
Q ss_conf 9999717977898534899997298799835
Q 000284 635 IILLTTHSMDEAEELGDRIAIMANGSLKCCG 665 (1723)
Q Consensus 635 tiiltTH~mdEa~~l~DrI~Im~~G~l~~~G 665 (1723)
++|+++|..+. ..++|++..+.+|++...+
T Consensus 132 ~il~~~h~~~~-~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 132 NVVATIPIRDV-HPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp EEEEECCSSCC-SHHHHHHHTCTTCEEEECC
T ss_pred EEEEEECCHHH-HHHHCEEEEEECCEEEEEC
T ss_conf 89999744778-9863659987199999989
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=1.3e-10 Score=85.65 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEE
Q ss_conf 89989569999999999----90699889993879999999999999999998741699699994377888997757999
Q 000284 1489 SFTLSGGNKRKLSVAIA----MIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIG 1564 (1723)
Q Consensus 1489 ~~~lSgG~krrl~iA~a----l~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~ 1564 (1723)
...+|+|+|+.+.++.. ....|++++.|||-++|+|...+.+.+.|++.. + . +-||+|||+.+-++ .+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~-~-~QviitTHsp~~~~-~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-H-TQFIVITHNKIVME-AADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-T-SEEEEECCCTTGGG-GCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC-C-C-CEEEEEECCHHHHH-HCCCEE
T ss_conf 110257776677777665565422674455432033579789999999999855-4-8-87999989889997-324289
Q ss_pred E
Q ss_conf 9
Q 000284 1565 I 1565 (1723)
Q Consensus 1565 i 1565 (1723)
.
T Consensus 293 ~ 293 (308)
T d1e69a_ 293 G 293 (308)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=5e-10 Score=81.64 Aligned_cols=79 Identities=30% Similarity=0.333 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHH----HHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEE
Q ss_conf 3237889568999999999----726996866059988999999999999999972896999971797789853489999
Q 000284 580 IVVRALSGGMKRKLSLGIA----LIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAI 655 (1723)
Q Consensus 580 ~~~~~LSGG~krkLsiA~A----lig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa~~l~DrI~I 655 (1723)
.....+|+|+|..+.++.. ....+.++++|||-++|+|...+.+.++|+....+.-+|+|||+.+-.+ .+|++..
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HCCCEEE
T ss_conf 101102577766777776655654226744554320335797899999999998554887999989889997-3242899
Q ss_pred --EECC
Q ss_conf --7298
Q 000284 656 --MANG 659 (1723)
Q Consensus 656 --m~~G 659 (1723)
|.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEECC
T ss_conf 999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=3.3e-08 Score=69.12 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH----HCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHCCE
Q ss_conf 0632378895689999999997----269968660599889999999999999999728-96999971797789853489
Q 000284 578 VNIVVRALSGGMKRKLSLGIAL----IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK-GRIILLTTHSMDEAEELGDR 652 (1723)
Q Consensus 578 ~~~~~~~LSGG~krkLsiA~Al----ig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~-~rtiiltTH~mdEa~~l~Dr 652 (1723)
.......||||||..+++|..+ ..++++++||||+++|||..++.+-++|.+.+. +.-+|+|||..+-++. ||+
T Consensus 326 ~~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~ 404 (427)
T d1w1wa_ 326 RFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDA 404 (427)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCC
T ss_conf 0434333223047999999999995479997799968877789999999999999972899889999587899973-661
Q ss_pred EEEE
Q ss_conf 9997
Q 000284 653 IAIM 656 (1723)
Q Consensus 653 I~Im 656 (1723)
+...
T Consensus 405 ~~~V 408 (427)
T d1w1wa_ 405 LVGV 408 (427)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 7999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.45 E-value=3.5e-06 Score=55.23 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=25.9
Q ss_pred CCCEEECCCCCCCCCHHHHHHH-HHHHHHHH-CCCEEEEECCCHHHHH
Q ss_conf 9968660599889999999999-99999972-8969999717977898
Q 000284 602 DSKVVILDEPTSGMDPYSMRLT-WQLIKKIK-KGRIILLTTHSMDEAE 647 (1723)
Q Consensus 602 ~p~vliLDEPTsGlDp~srr~i-w~~l~~~~-~~rtiiltTH~mdEa~ 647 (1723)
+..++++||+..|-||.....+ |.++..+. .+..++++||+.+-.+
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 772785545456862332002588888888623761378652023332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=1.7e-05 Score=50.57 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=24.4
Q ss_pred CEEECCCCCCCCCHHHHHHH-HHHHHHHH--CCCEEEEECCCHHHHH
Q ss_conf 68660599889999999999-99999972--8969999717977898
Q 000284 604 KVVILDEPTSGMDPYSMRLT-WQLIKKIK--KGRIILLTTHSMDEAE 647 (1723)
Q Consensus 604 ~vliLDEPTsGlDp~srr~i-w~~l~~~~--~~rtiiltTH~mdEa~ 647 (1723)
.++++||+..|-+|..+..+ |.++..+. .+..+++|||+.+.++
T Consensus 122 sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 122 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp EEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 08853222358774566678987645432045442898524687764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.09 E-value=8e-05 Score=45.89 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=38.2
Q ss_pred HCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCE
Q ss_conf 06998899938799999999999-999999987416996999943778889977579
Q 000284 1507 IGDPPIVILDEPSTGMDPIAKRF-MWEVISRLSTRQGKTAVILTTHSMNEAQALCTR 1562 (1723)
Q Consensus 1507 ~~~p~illLDEPt~GLDp~~r~~-i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dr 1562 (1723)
+.+..++++||+..|-||..... .|.++..+.+ .+ ..++++||+.+-.+.-..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~-~~~i~tTH~~eL~~l~~~~ 166 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RR-AYTLFATHYFELTALGLPR 166 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HT-CEEEEECCCHHHHTCCCTT
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CC-CCEEEEEECHHHHHHHHCC
T ss_conf 8977278554545686233200258888888862-37-6137865202333221021
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=0.00011 Score=44.99 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=70.8
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCC
Q ss_conf 254345997588099999489994988999991--------998799518999685089996876054399805898799
Q 000284 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMIS--------GEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLE 1446 (1723)
Q Consensus 1375 av~~is~~v~~Gei~gllG~NGAGKTTll~~l~--------g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~ 1446 (1723)
+-++++++ +.+.+.-|-|||.+||||.+|.+. |..-|.. .+.+ +-.|.++-
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~-~a~~-------------------~~~d~I~~ 89 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ-KVEI-------------------GPIDRIFT 89 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSS-EEEE-------------------CCCCEEEE
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECC-CEEC-------------------CCCHHHEE
T ss_conf 64057988-995399995467313689999879999998729767417-6661-------------------34420234
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 99999999999997099905599999999987499520189989989569999999999906998899938799999999
Q 000284 1447 YLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1526 (1723)
Q Consensus 1447 ~lTv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GLDp~~ 1526 (1723)
.+...|.+.-... ++. .+-++++-.+--..+..++++||+..|=+|..
T Consensus 90 ~~~~~d~~~~~~S-------------------------------~F~-~E~~~~~~il~~~~~~sLvliDE~~~gT~~~e 137 (234)
T d1wb9a2 90 RVGAADDLASGRS-------------------------------TFM-VEMTETANILHNATEYSLVLMDEIGRGTSTYD 137 (234)
T ss_dssp EEC------------------------------------------CH-HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred EECCCCCCCCCHH-------------------------------HHH-HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 8746753436531-------------------------------899-99999999997454660885322235877456
Q ss_pred HHHH-HHHHHHHHHCCCCEEEEEECCCHHHHH
Q ss_conf 9999-999999874169969999437788899
Q 000284 1527 KRFM-WEVISRLSTRQGKTAVILTTHSMNEAQ 1557 (1723)
Q Consensus 1527 r~~i-~~~i~~l~~~~~~~tiilttH~m~e~e 1557 (1723)
...+ |.++..+..+ ++..+++|||..+..+
T Consensus 138 g~~l~~a~l~~l~~~-~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 138 GLSLAWACAENLANK-IKALTLFATHYFELTQ 168 (234)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEECSCGGGGG
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEECCHHHHHH
T ss_conf 667898764543204-5442898524687764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.83 E-value=0.0018 Score=36.60 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=20.2
Q ss_pred CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 1024345788479199998799994799999994
Q 000284 467 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 467 ~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~ 500 (1723)
..+|++.-.+.+||++.+.|+.|+||||++.-++
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6688874697898089999479997999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.70 E-value=0.00079 Score=39.06 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8809999948999498899999199879951899
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~ 1418 (1723)
+|.+..++|+.|+|||||++.|.|......|.+.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.45 E-value=0.011 Score=31.28 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=12.0
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 099999489994988999991
Q 000284 1387 ECFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1387 ei~gllG~NGAGKTTll~~l~ 1407 (1723)
.++.|+||+|+|||||+-=|+
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEEEECSCCC----HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999999899999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.43 E-value=0.017 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=12.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 758809999948999498899999
Q 000284 1383 VQAGECFGFLGTNGAGKTTTLSMI 1406 (1723)
Q Consensus 1383 v~~Gei~gllG~NGAGKTTll~~l 1406 (1723)
+++|.+.-+.|+.|+||||+..-+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qi 46 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRF 46 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 869849999918999999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.28 E-value=0.0029 Score=35.20 Aligned_cols=156 Identities=14% Similarity=0.064 Sum_probs=80.0
Q ss_pred CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 41254345997588099999489994988999991998799518999685089996876054399805898799999999
Q 000284 1373 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQE 1452 (1723)
Q Consensus 1373 ~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~lTv~e 1452 (1723)
...+|++.-.+.+|+++.+.|+.|+||||+..-+.--.....| .++.|+. .+++..+
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----------------~~v~~~s------~E~~~~~ 78 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----------------KKVGLAM------LEESVEE 78 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----------------CCEEEEE------SSSCHHH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----------------CCEEEEE------ECCCHHH
T ss_conf 3668887469789808999947999799999999972655336-----------------6345764------0111135
Q ss_pred HH-HHHHHHCCCCHHHHHH---------HHHHHHHHC-CCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99-9999970999055999---------999999874-9952-0189989989569999999999906998899938799
Q 000284 1453 HL-ELYARIKGVAEYRMDD---------VVMEKLVEF-DLLK-HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST 1520 (1723)
Q Consensus 1453 ~l-~~~~~~~g~~~~~~~~---------~~~~~l~~~-~L~~-~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~ 1520 (1723)
.. ++.+...+++....+. ...++.+.. +... +.................-...--.+|+++++|=-+
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~- 157 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS- 157 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEE-
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-
T ss_conf 7769999864587101012222214567788898874035214662143310689999986543213676259970542-
Q ss_pred CCCH--------HHHHHHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 9999--------99999999999987416996999943778
Q 000284 1521 GMDP--------IAKRFMWEVISRLSTRQGKTAVILTTHSM 1553 (1723)
Q Consensus 1521 GLDp--------~~r~~i~~~i~~l~~~~~~~tiilttH~m 1553 (1723)
-|++ .....+...+++++.+.+ ++|++++|--
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~-i~vi~~~q~~ 197 (277)
T d1cr2a_ 158 IVVSASGESDERKMIDNLMTKLKGFAKSTG-VVLVVICHLK 197 (277)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHC-CEEEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEEECCCC
T ss_conf 120346544306778999999999765016-5520310356
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.13 E-value=0.00059 Score=39.92 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8809999948999498899999199879951899
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~ 1418 (1723)
+|.+..|+|+.|+||||+++.|.|......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.13 E-value=0.01 Score=31.48 Aligned_cols=99 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79199998799994799999994899999622999561487218987235299825888899999999999999950999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 557 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~ 557 (1723)
.-.|..|+||+|+|||||+-=|+-.+. ...++++++-=+.. ..-..|.|..|+.+-|++
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~------------------~~g~kV~lit~Dt~---R~ga~eQL~~~a~~l~v~ 69 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK------------------KKGFKVGLVGADVY---RPAALEQLQQLGQQIGVP 69 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH------------------HTTCCEEEEECCCS---SHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH------------------HCCCCEEEEEEECC---CCCHHHHHHHHCCCCCCC
T ss_conf 998999989999998999999999999------------------77993699972023---551567898740146842
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
Q ss_conf 78899999999999399821063237889568999999999726996866059988999999
Q 000284 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 619 (1723)
Q Consensus 558 ~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~s 619 (1723)
-. .-.....+.--+++ .+..+...+-++++.| |+|..|..
T Consensus 70 ~~------------------~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~~~ 109 (211)
T d1j8yf2 70 VY------------------GEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHGYG 109 (211)
T ss_dssp EE------------------CCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCCTT
T ss_pred EE------------------ECCCCHHHHHHHHH--HHHHHHCCCCCEEEEE--CCCCCCCC
T ss_conf 23------------------02441024478999--9987402677369985--37767631
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0034 Score=34.70 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 79199998799994799999994899999622999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALV 512 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i 512 (1723)
+|++++++|++|+||||++|.|.|-..--.|.+.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.00014 Score=44.23 Aligned_cols=35 Identities=37% Similarity=0.461 Sum_probs=28.8
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 024345788479199998799994799999994899
Q 000284 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 468 av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
..++.++.+.+| +++|.|+|||||||++..|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.86 E-value=0.029 Score=28.30 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=26.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCC
Q ss_conf 88479199998799994799999994899999622-999561
Q 000284 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-ALVFGK 515 (1723)
Q Consensus 475 ~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~-v~i~G~ 515 (1723)
.++.|.|+-+-|+.|+||||+.-.++....-..|. ++|+..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.0022 Score=35.92 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=17.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999994899949889999919987
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
|.++.|.||+||||||+++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.03 Score=28.18 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
+-|.||.|+|||++.+.++..+
T Consensus 48 iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHC
T ss_conf 7866899888228999999982
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.70 E-value=0.041 Score=27.29 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=10.2
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q ss_conf 19999879999479999999
Q 000284 480 QILALLGHNGAGKSTTISML 499 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL 499 (1723)
++..+.|+.||||||+.+-+
T Consensus 15 ~liil~G~pGsGKST~a~~l 34 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEH 34 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999899999899999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.00039 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.1
Q ss_pred CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1254345997588099999489994988999991998
Q 000284 1374 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1374 ~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
...++.++.+.+| +..|.|+|||||||++..|.-.+
T Consensus 13 ~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 13 NGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6870279974998-08998899998799999999996
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.54 E-value=0.011 Score=31.31 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=12.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 88099999489994988999991
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~ 1407 (1723)
++.++.|+||+|+|||||+-=|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 97799998999998899999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.017 Score=29.91 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 69988999387999999999999999999874169969999437788
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554 (1723)
Q Consensus 1508 ~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~ 1554 (1723)
+..+++++||.-. |...+...+.+.+.+.. ..+.+|++|++.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~---~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC---CCCCCEEEECCCC
T ss_conf 8724999424333-45431112210022135---6643000102111
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.52 E-value=0.026 Score=28.63 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=14.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 80999994899949889999919987995
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEYPTD 1414 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~p~s 1414 (1723)
+.-+-+.|+-|+||||+++.|.+.++|..
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 78889994035662578999865301456
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.49 E-value=0.005 Score=33.52 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 919999879999479999999489999
Q 000284 479 NQILALLGHNGAGKSTTISMLVGLIPP 505 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~Gl~~p 505 (1723)
|.+.+|+||+||||||+++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.055 Score=26.38 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999994899949889999919987
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
...+-|.||.|+|||++.+.++....
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 88678668998882289999999829
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.056 Score=26.34 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=24.9
Q ss_pred HHHHCCCCEEECCCCCC-----CCCHHHHHHHHHHHHHHH--CCCEEEEECCCH
Q ss_conf 99726996866059988-----999999999999999972--896999971797
Q 000284 597 IALIGDSKVVILDEPTS-----GMDPYSMRLTWQLIKKIK--KGRIILLTTHSM 643 (1723)
Q Consensus 597 ~Alig~p~vliLDEPTs-----GlDp~srr~iw~~l~~~~--~~rtiiltTH~m 643 (1723)
.+.+.+++++++|--+. --|....+.+...++.+. .+.+++++.|.-
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 875267658962813542266523225689999887777644797540131005
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.20 E-value=0.059 Score=26.16 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=71.1
Q ss_pred EEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHH
Q ss_conf 0243457-884791999987999947999999948999996229995614872189872352998258888999999999
Q 000284 468 AVNSLQL-TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREH 546 (1723)
Q Consensus 468 av~~lsl-~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~Eh 546 (1723)
.||.+=- .+++|+++.+.|+.|+||||+..-++--..-..+.+ .|.. + +.+..+.
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~------------------~~is-----~-e~~~~~~ 69 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERA------------------ILFA-----Y-EESRAQL 69 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCE------------------EEEE-----S-SSCHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC------------------CEEE-----C-CCCHHHH
T ss_conf 79884568986984999991899999999999999998723244------------------1121-----2-6799999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCC---CHHHHHHH
Q ss_conf 999999509997889999999999939982106323788956899999999972699686605998899---99999999
Q 000284 547 LEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGM---DPYSMRLT 623 (1723)
Q Consensus 547 L~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGl---Dp~srr~i 623 (1723)
... +.-.+.+..+. ...+.....+...........-..-....--.+|++++.|--++-+ ++...+..
T Consensus 70 ~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~ 140 (242)
T d1tf7a2 70 LRN-AYSWGMDFEEM--------ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQF 140 (242)
T ss_dssp HHH-HHTTSCCHHHH--------HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHH
T ss_pred HHH-HHHCCCCHHHH--------HHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHH
T ss_conf 999-99829986998--------545861799730001017999999999998408853322043143048999999999
Q ss_pred HH-HHHHHH-CCCEEEEECCCHH----------HHHHHCCEEEEEE
Q ss_conf 99-999972-8969999717977----------8985348999972
Q 000284 624 WQ-LIKKIK-KGRIILLTTHSMD----------EAEELGDRIAIMA 657 (1723)
Q Consensus 624 w~-~l~~~~-~~rtiiltTH~md----------Ea~~l~DrI~Im~ 657 (1723)
.. +.+..+ .+.+++++.|.-. ....++|-|..|.
T Consensus 141 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 141 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 9999999998698399998567512554457764046421699999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0033 Score=34.76 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++++.|++||||||+++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.009 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=11.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999948999498899999199
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
|.++.|.||.|+||||+++.|.-.
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 809999999999999999999863
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.07 E-value=0.0029 Score=35.16 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 79199998799994799999994899999622999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALV 512 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i 512 (1723)
+|++++|+|++|+||||++|.|.|-..-..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.94 E-value=0.014 Score=30.40 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=14.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHH
Q ss_conf 97588099999489994988999
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLS 1404 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~ 1404 (1723)
.+++|+++-+.|+.|+|||++..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHH
T ss_conf 99698399999479999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0039 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
|+++.|++||||||+++-|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.83 E-value=0.071 Score=25.59 Aligned_cols=159 Identities=19% Similarity=0.107 Sum_probs=72.6
Q ss_pred CEEEEEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHH
Q ss_conf 10243457-88479199998799994799999-99489999962299956148721898723529982588889999999
Q 000284 467 CAVNSLQL-TLYENQILALLGHNGAGKSTTIS-MLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVR 544 (1723)
Q Consensus 467 ~av~~lsl-~i~~Gei~~LLG~NGAGKSTll~-iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~ 544 (1723)
..||++-- .+++|+++.+.|+.|+||||+.- ++..........+.+.. .+.+..
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s------------------------~e~~~~ 68 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT------------------------FEETPQ 68 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE------------------------SSSCHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC------------------------CCCCHH
T ss_conf 77988556899698399999479999999999999999985688742012------------------------667999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCHHHHHHH-HHHHHH--HCCCCEEECCCCCCCC--
Q ss_conf 999999995099978899999999999399821----0632378895689999-999997--2699686605998899--
Q 000284 545 EHLEMFAVLKGVKEELLESVVAEMVDEVGLADK----VNIVVRALSGGMKRKL-SLGIAL--IGDSKVVILDEPTSGM-- 615 (1723)
Q Consensus 545 EhL~~~~~lkg~~~~~~~~~v~~~l~~~~L~~~----~~~~~~~LSGG~krkL-siA~Al--ig~p~vliLDEPTsGl-- 615 (1723)
+..... ...+..... .......... ...............+ .-..+. -.+|+++++|--+.-.
T Consensus 69 ~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 69 DIIKNA-RSFGWDLAK-------LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp HHHHHH-GGGTCCHHH-------HHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred HHHHHH-HHCCCCHHH-------HHHHCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999-984998489-------887143024442103354444302458999999999988631222002078899876
Q ss_pred --C-HHHHHHHHHHHHHHH-CCCEEEEECCCHHH---------HHHHCCEEEEEE
Q ss_conf --9-999999999999972-89699997179778---------985348999972
Q 000284 616 --D-PYSMRLTWQLIKKIK-KGRIILLTTHSMDE---------AEELGDRIAIMA 657 (1723)
Q Consensus 616 --D-p~srr~iw~~l~~~~-~~rtiiltTH~mdE---------a~~l~DrI~Im~ 657 (1723)
+ ...++.+..+++..+ .+.+++++.|..++ .+.++|.+..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 141 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 0572678999999999998639716884210255422246762335362999988
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.82 E-value=0.01 Score=31.46 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
|++++||-||||||+++-|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.011 Score=31.29 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=10.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999994899949889999919
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISG 1408 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g 1408 (1723)
+.++.|.||.||||||+.+.|..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 71899989999898999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.074 Score=25.49 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=34.3
Q ss_pred HCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 269968660599889999999999999999728969999717977
Q 000284 600 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMD 644 (1723)
Q Consensus 600 ig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~md 644 (1723)
.+..+++++||.-. |...+...+..++........+|++|++.+
T Consensus 129 ~~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 129 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 78724999424333-454311122100221356643000102111
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.66 E-value=0.013 Score=30.70 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=40.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 47919999879999479999999489999962299956148721898723529982588889999999999999995099
Q 000284 477 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV 556 (1723)
Q Consensus 477 ~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~ 556 (1723)
.++.+..|+||+|+|||||+-=|+-.+.- . .++++++-=+.. ..-..|.|..|+++-++
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~-~-----------------g~kV~lit~Dt~---R~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN-L-----------------GKKVMFCAGDTF---RAAGGTQLSEWGKRLSI 62 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT-T-----------------TCCEEEECCCCS---STTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-C-----------------CCCEEEEEECCC---CCCCHHHHHHCCCCCCC
T ss_conf 99779999899999889999999999997-7-----------------990799981366---65402667640545682
Q ss_pred C
Q ss_conf 9
Q 000284 557 K 557 (1723)
Q Consensus 557 ~ 557 (1723)
+
T Consensus 63 ~ 63 (207)
T d1okkd2 63 P 63 (207)
T ss_dssp C
T ss_pred E
T ss_conf 3
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.60 E-value=0.015 Score=30.22 Aligned_cols=26 Identities=46% Similarity=0.602 Sum_probs=15.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79199998799994799999994899
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.|++..|.|+.||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.50 E-value=0.044 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999947999999948999
Q 000284 482 LALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
.-|.||.|+|||++.+.+++.+.
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.015 Score=30.33 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479199998799994799999994899
Q 000284 477 YENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 477 ~~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
+.+.|+.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.36 E-value=0.025 Score=28.77 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++++|+.|+||||+++.|+|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.36 E-value=0.0065 Score=32.75 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999948999498899999199879
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEYP 1412 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~p 1412 (1723)
++|+.|++||||||+++-|...+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.095 Score=24.74 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
Q ss_conf 699889993879999999999999999998741699699994377888997
Q 000284 1508 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1558 (1723)
Q Consensus 1508 ~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~ 1558 (1723)
..-..+++| .+..+...|+.+.++.++.. - ...++....+.+.+..
T Consensus 63 ~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~--~-~~~~v~l~~~~e~~~~ 108 (172)
T d1yj5a2 63 RQGKRVVID--NTNPDVPSRARYIQCAKDAG--V-PCRCFNFCATIEQARH 108 (172)
T ss_dssp HTTCCEEEE--SCCCSHHHHHHHHHHHHHHT--C-CEEEEEECCCHHHHHH
T ss_pred HCCCCCEEE--CCCCCHHHHHHHHHHHHHCC--C-CEEEEEECCCHHHHHH
T ss_conf 779995551--76799999999999998558--8-8799994899999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.34 E-value=0.012 Score=30.91 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=12.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999994899949889999919
Q 000284 1387 ECFGFLGTNGAGKTTTLSMISG 1408 (1723)
Q Consensus 1387 ei~gllG~NGAGKTTll~~l~g 1408 (1723)
.++.|+||||+||||++-=|+.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989999988999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.0034 Score=34.69 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=24.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEE
Q ss_conf 999994899949889999919987995189996850
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1423 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~ 1423 (1723)
++.|.||+|+||||+++.+...+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999988999719999999999999779979999845
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.019 Score=29.60 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 791999987999947999999948999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
+|.+++|+||+|+||||+++.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.17 E-value=0.012 Score=30.82 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++|+|+-||||||+++.|+|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.0049 Score=33.58 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=30.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 19999879999479999999489999962299956148
Q 000284 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 517 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i 517 (1723)
....|.|++|+||||+++.++..+....+.+.+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~ 39 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 69999889997199999999999997799799998455
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.99 E-value=0.019 Score=29.47 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+++++|+-||||||+++-|+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.97 E-value=0.013 Score=30.65 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=59.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 78847919999879999479999999489999962299956148721898723529982588889999999999999995
Q 000284 474 LTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVL 553 (1723)
Q Consensus 474 l~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~l 553 (1723)
+.-.+-.+.+|+||+|+|||||+-=|+-.+.- -.++++++-=+.. ..-..|.|.-|+++
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~------------------~~~kV~lit~Dt~---R~gA~eQL~~~a~~ 64 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD------------------EGKSVVLAAADTF---RAAAIEQLKIWGER 64 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH------------------TTCCEEEEEECTT---CHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH------------------CCCCEEEEEECCC---CCCHHHHHHHHHHH
T ss_conf 79999989999899999889999999999997------------------7990699960133---42046788877643
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 0999788999999999993998210632378895689999999997269968660599889999999999999
Q 000284 554 KGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQL 626 (1723)
Q Consensus 554 kg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~ 626 (1723)
-+++ -........+ -.-.+...+.+...+-++++.| |+|..|.....+-++
T Consensus 65 l~i~------------------~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~~~el 115 (213)
T d1vmaa2 65 VGAT------------------VISHSEGADP--AAVAFDAVAHALARNKDVVIID--TAGRLHTKKNLMEEL 115 (213)
T ss_dssp HTCE------------------EECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHHHHHH
T ss_pred CCCC------------------CCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEE--CCCCCCCHHHHHHHH
T ss_conf 2764------------------1036777768--9987887899987699989982--455330168888998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.96 E-value=0.03 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880999994899949889999919987
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
.|+++.|.||.||||||+-+.|...+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.90 E-value=0.022 Score=29.15 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=13.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999948999498899999199
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
..++.|+||||+||||++-=|+..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.83 E-value=0.01 Score=31.39 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 199998799994799999994899999
Q 000284 480 QILALLGHNGAGKSTTISMLVGLIPPT 506 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~~pt 506 (1723)
.|.++.|.+||||||+++-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.018 Score=29.67 Aligned_cols=20 Identities=45% Similarity=0.796 Sum_probs=9.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799994799999994
Q 000284 481 ILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~ 500 (1723)
|.+|+||+|+|||||+-=|+
T Consensus 11 vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999899999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.73 E-value=0.024 Score=28.79 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=54.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79199998799994799999994899999622999561487218987235299825888899999999999999950999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK 557 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~~ 557 (1723)
+..+..|+||||+|||||+-=|+-.+. .. .++++++.=+.. ..-..|.|.-|+++-+++
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~-~~-----------------g~kV~lit~Dt~---R~gA~eQL~~~a~~l~v~ 67 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK-----------------GRRPLLVAADTQ---RPAAREQLRLLGEKVGVP 67 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HT-----------------TCCEEEEECCSS---CHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HC-----------------CCCEEEEECCCC---CCHHHHHHHHHHHHCCCC
T ss_conf 986899989999988999999999999-77-----------------992799954434---640888899999862886
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
Q ss_conf 788999999999993998210632378895689999999997269968660599889999999999
Q 000284 558 EELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLT 623 (1723)
Q Consensus 558 ~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~i 623 (1723)
- ..-.....+. .-.+-....+...+-++++.| |+|..+.....+
T Consensus 68 ~------------------~~~~~~~~~~--~~~~~~~~~~~~~~~d~vlID--TaGr~~~d~~~~ 111 (207)
T d1ls1a2 68 V------------------LEVMDGESPE--SIRRRVEEKARLEARDLILVD--TAGRLQIDEPLM 111 (207)
T ss_dssp E------------------EECCTTCCHH--HHHHHHHHHHHHHTCCEEEEE--CCCCSSCCHHHH
T ss_pred C------------------CCCCCCCHHH--HHHHHHHHHHHHCCCCCEEEC--CCCCCHHHHHHH
T ss_conf 3------------------1112442036--788889888763367640334--544200003668
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.64 E-value=0.12 Score=24.15 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 99879999479999999489
Q 000284 483 ALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~Gl 502 (1723)
.|.||-|+|||++.+.++..
T Consensus 46 Ll~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 46 LLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 87668988835999999987
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.61 E-value=0.054 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
-++++|+.|+||||+++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.49 E-value=0.031 Score=28.13 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 91999987999947999999948999
Q 000284 479 NQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
+.+.++.|+.||||||+.+.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899989999898999999999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.44 E-value=0.052 Score=26.55 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999994899949889999919987
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
..-+-|.||.|.|||++.+.+++...
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 87578878998763047788787718
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.014 Score=30.37 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=59.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 09999948999498899999199879951899968508999687605439980589879999999999999997099905
Q 000284 1387 ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1466 (1723)
Q Consensus 1387 ei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~~ 1466 (1723)
.++.|+||||+||||++-=|+..+.- . .++++.+.-+. ...-+.|.|..|+++-+++-.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~-~-----------------g~kV~lit~Dt---~R~gA~eQL~~~a~~l~v~~~ 68 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQ-Q-----------------GKSVMLAAGDT---FRAAAVEQLQVWGQRNNIPVI 68 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHT-T-----------------TCCEEEECCCT---TCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-C-----------------CCCEEEEECCC---CCCCCHHHHHHHHHHCCCCCC
T ss_conf 79999899999989999999999997-7-----------------99479982321---366612045554343388621
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CHHHHHHHHHHHHHH
Q ss_conf 59999999998749952018998998956999999999990699889993879999---999999999999998
Q 000284 1467 RMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM---DPIAKRFMWEVISRL 1537 (1723)
Q Consensus 1467 ~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GL---Dp~~r~~i~~~i~~l 1537 (1723)
. ......+..=.++ .+..|-..+-+++|.|= +|. |....+++.++.+..
T Consensus 69 ~------------------~~~~~d~~~~l~~--~~~~a~~~~~d~ilIDT--aGr~~~d~~~~~el~~l~~~~ 120 (211)
T d2qy9a2 69 A------------------QHTGADSASVIFD--AIQAAKARNIDVLIADT--AGRLQNKSHLMEELKKIVRVM 120 (211)
T ss_dssp C------------------CSTTCCHHHHHHH--HHHHHHHTTCSEEEECC--CCCGGGHHHHHHHHHHHHHHH
T ss_pred C------------------CCCCCCHHHHHHH--HHHHHHHCCCCEEEECC--CCCCCCCHHHHHHHHHHHHHH
T ss_conf 1------------------3568779999999--99999876998899656--887632077899999999998
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.22 E-value=0.03 Score=28.18 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
..+|+|+-||||||+++-|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.22 E-value=0.036 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=13.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 791999987999947999999948
Q 000284 478 ENQILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~G 501 (1723)
+|.+..|.|..||||||+-+.|+-
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976999889999999999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.22 E-value=0.014 Score=30.51 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 919999879999479999999489999
Q 000284 479 NQILALLGHNGAGKSTTISMLVGLIPP 505 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~Gl~~p 505 (1723)
.-+.|+.|+-||||||+++-|+..+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 328974389999899999999999975
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.037 Score=27.54 Aligned_cols=20 Identities=40% Similarity=0.742 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|+.|+||||++|.|+|
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.99 E-value=0.041 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=12.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7919999879999479999999489
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl 502 (1723)
+|-...|.|+.||||||+.+.|+-.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9888999828999889999999998
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.95 E-value=0.039 Score=27.40 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
+.+++|+.|+||||+++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.80 E-value=0.17 Score=22.99 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=30.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCE
Q ss_conf 97588099999489994988999991998799518-999685
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT-AFIFGK 1422 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~-i~i~g~ 1422 (1723)
.++.|.+.-+-||.|+||||+.-.++....-..|. ++++..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.71 E-value=0.046 Score=26.90 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 588099999489994988999991998
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
++|-...|.||.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.70 E-value=0.049 Score=26.69 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 91999987999947999999948999
Q 000284 479 NQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
.++..|.|+.||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.19 Score=22.76 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=76.3
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 25434599758809999948999498899999199879951899968508999687605439980589879999999999
Q 000284 1375 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHL 1454 (1723)
Q Consensus 1375 av~~is~~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~lTv~e~l 1454 (1723)
++++ +.+|++.-|.|+.|+||||+.--|+.-+. +|.- ..+.... ....+-|+-.++ +..+..
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~-~~~~~~~-----~~~~vl~~~~E~------~~~~~~ 83 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGEL-----PTGPVIYLPAED------PPTAIH 83 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCC-----CCCCEEEEESSS------CHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCC-CCCCCCC-----CCCCEEEEECCC------HHHHHH
T ss_conf 8689----55895899992899989999999999997--6997-2111235-----787368985123------499999
Q ss_pred -HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-----CCCHHHHH
Q ss_conf -999997099905599999999987499520189989989569999999999906998899938799-----99999999
Q 000284 1455 -ELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPST-----GMDPIAKR 1528 (1723)
Q Consensus 1455 -~~~~~~~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~-----GLDp~~r~ 1528 (1723)
++.+...+...... ........+....+.......- ..+.-....+.+|+++++|--+. --|....+
T Consensus 84 ~Rl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~ 156 (274)
T d1nlfa_ 84 HRLHALGAHLSAEER----QAVADGLLIQPLIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMA 156 (274)
T ss_dssp HHHHHHHTTSCHHHH----HHHHHHEEECCCTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred HHHHHHHHCCCHHHH----HCCCCCCEECCCCCCCCHHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHH
T ss_conf 999998623686665----3123332321456742035789---999998875267658962813542266523225689
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 9999999987416996999943778
Q 000284 1529 FMWEVISRLSTRQGKTAVILTTHSM 1553 (1723)
Q Consensus 1529 ~i~~~i~~l~~~~~~~tiilttH~m 1553 (1723)
.+.+.+++++.+.+ ++|+++.|.-
T Consensus 157 ~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 157 QVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred HHHHHHHHHHHCCC-CCEEHHHHCC
T ss_conf 99988777764479-7540131005
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.054 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899949889999919
Q 000284 1388 CFGFLGTNGAGKTTTLSMISG 1408 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g 1408 (1723)
.+.|+||+|+||+|+++-|..
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 199999899999999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.044 Score=27.02 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.|+||+||||||+.+.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.30 E-value=0.049 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 588099999489994988999991998
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
.+|-++-|.|+.||||||+-+.|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.26 E-value=0.056 Score=26.33 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+|+|+.|+||||+++.|+|-
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.20 E-value=0.2 Score=22.48 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+-|.||-|.|||++.+.++...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.12 E-value=0.062 Score=26.02 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
-++|+|+.||||||+++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.07 E-value=0.047 Score=26.85 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.+|+|..|+||||++|.|.|.-
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999986999999985898
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.05 E-value=0.052 Score=26.54 Aligned_cols=18 Identities=50% Similarity=0.671 Sum_probs=8.9
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 998799994799999994
Q 000284 483 ALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~ 500 (1723)
+|.||+|+||||+++.|.
T Consensus 4 vl~GPsGsGK~tl~~~L~ 21 (190)
T d1lvga_ 4 VLSGPSGAGKSTLLKKLF 21 (190)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.01 E-value=0.047 Score=26.86 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 19999879999479999999489
Q 000284 480 QILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl 502 (1723)
-+.+++||-.||||||++.|++.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 87999969985499999999823
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.95 E-value=0.053 Score=26.47 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
|.|+-|+.||||||+.+.|.-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.87 E-value=0.064 Score=25.92 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+++++|+-|+||||+++-|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.82 E-value=0.067 Score=25.77 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
..+++|+-|+||||+++-|+|.-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.75 E-value=0.049 Score=26.71 Aligned_cols=122 Identities=19% Similarity=0.144 Sum_probs=70.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 57884791999987999947999999948999996229995614872189872352998258888999999999999999
Q 000284 473 QLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAV 552 (1723)
Q Consensus 473 sl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~ 552 (1723)
..-+..+.-..+.|+-||||||+++.|.+.++|..=-+.|....- +-+-+..++. .
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~E----------l~l~~~~~~~--~------------ 215 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----------IVFKHHKNYT--Q------------ 215 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCC----------CCCSSCSSEE--E------------
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCHHH----------HHCCCCCCCC--E------------
T ss_conf 999983788899940356625789998653014562331132265----------5111124541--0------------
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 50999788999999999993998210632378895689999999997269968660599889999999999999999728
Q 000284 553 LKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKK 632 (1723)
Q Consensus 553 lkg~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~ 632 (1723)
+... ...+ +. =.+-.||=.+|+.++++|--. +. .|++++....
T Consensus 216 ---------------------~~~~-----~~~~--~~--~ll~~~lR~~pd~iivgEiR~---~e----a~~~l~a~~t 258 (323)
T d1g6oa_ 216 ---------------------LFFG-----GNIT--SA--DCLKSCLRMRPDRIILGELRS---SE----AYDFYNVLCS 258 (323)
T ss_dssp ---------------------EECB-----TTBC--HH--HHHHHHTTSCCSEEEESCCCS---TH----HHHHHHHHHT
T ss_pred ---------------------ECCC-----CCHH--HH--HHHHHHHCCCCCCCCCCCCCC---HH----HHHHHHHHHH
T ss_conf ---------------------0146-----5424--99--999997434998545786674---65----9999999981
Q ss_pred CC-EEEEECCCHHHHHHHCCEEEEE
Q ss_conf 96-9999717977898534899997
Q 000284 633 GR-IILLTTHSMDEAEELGDRIAIM 656 (1723)
Q Consensus 633 ~r-tiiltTH~mdEa~~l~DrI~Im 656 (1723)
|. .++-|.|--+-.+. -+|++-|
T Consensus 259 Gh~g~~tT~Ha~s~~~a-~~Rl~~l 282 (323)
T d1g6oa_ 259 GHKGTLTTLHAGSSEEA-FIRLANM 282 (323)
T ss_dssp TCSCEEEEECCSSHHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCHHHH-HHHHHHH
T ss_conf 69857998787999999-9999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.73 E-value=0.068 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999948999498899999199879
Q 000284 1387 ECFGFLGTNGAGKTTTLSMISGEEYP 1412 (1723)
Q Consensus 1387 ei~gllG~NGAGKTTll~~l~g~~~p 1412 (1723)
.++.+.|+.||||||+.+.|.-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.72 E-value=0.099 Score=24.63 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+|+|+.|+||||+++.++|-
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.71 E-value=0.051 Score=26.62 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.+|+|..||||||+++.|+|-.
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996788
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.23 Score=22.10 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH
Q ss_conf 988999387999999999999999999874169969999437788
Q 000284 1510 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1554 (1723)
Q Consensus 1510 p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~ 1554 (1723)
.+++++||.= +|++.+...+...+.+.. ..+.+|++|++.+
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~---~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP---EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC---TTEEEEEEESCGG
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHCCC---CCEEEEEECCCCC
T ss_conf 8799997811-089999999999985689---8869999738856
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.068 Score=25.75 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=18.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79199998799994799999994899
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
+|-+.++-|+-||||||.++.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.037 Score=27.59 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=12.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 791999987999947999999948
Q 000284 478 ENQILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~G 501 (1723)
+|.+..|.|+.||||||+-+.|+-
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 996999889999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.57 E-value=0.07 Score=25.65 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 999879999479999999489999962
Q 000284 482 LALLGHNGAGKSTTISMLVGLIPPTTG 508 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ptsG 508 (1723)
.+++|..|+||||++|.|.|.-.-..|
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999899999789999999588867775
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.53 E-value=0.036 Score=27.61 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
+||+|+-++||||+++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.50 E-value=0.073 Score=25.53 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=11.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999489994988999991
Q 000284 1388 CFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~ 1407 (1723)
++.+.|+.||||||+.+-|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.42 E-value=0.043 Score=27.10 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
+||+|+-++||||+++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.11 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99994899949889999919
Q 000284 1389 FGFLGTNGAGKTTTLSMISG 1408 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g 1408 (1723)
+-|.||.|.||||+.+.++.
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 98889998759999999998
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.33 E-value=0.069 Score=25.68 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999948999498899999199879
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEYP 1412 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~p 1412 (1723)
++|+-|+.||||||+-+.|.-.+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.32 E-value=0.069 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=16.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998799994799999994899
Q 000284 480 QILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
...++.|+.|+||||+.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.31 E-value=0.067 Score=25.80 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999947999999948999
Q 000284 482 LALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
.+|+||+||||+|+++.|.-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.31 E-value=0.039 Score=27.40 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+||+|+-++||||+++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.30 E-value=0.047 Score=26.82 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
.+.|+|+.||||||+++.+++...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.077 Score=25.35 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
|.|+-|+.||||||+.+.|.-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.08 Score=25.27 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
.++++|.-|+||||+++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.23 E-value=0.072 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=25.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCC
Q ss_conf 8847919999879999479999999489999962-29995614
Q 000284 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTG-DALVFGKN 516 (1723)
Q Consensus 475 ~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG-~v~i~G~~ 516 (1723)
.++.|.|+-+-|+.|+||||+.-.++....-..| -++++..+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.20 E-value=0.087 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999994899949889999919987
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
..++.|.|+.||||||+-+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.14 E-value=0.074 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
|..+.|+.||||||+.+.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.11 E-value=0.066 Score=25.82 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.++|+|+-||||||+++-|+|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.075 Score=25.44 Aligned_cols=21 Identities=43% Similarity=0.450 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
..|.|+.|+||||+.+.|+-.
T Consensus 5 I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.07 E-value=0.084 Score=25.12 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
+..|.|+.||||||+.+.|+..+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.04 E-value=0.097 Score=24.67 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.|++||-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.036 Score=27.64 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 809999948999498899999199879
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEYP 1412 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~p 1412 (1723)
.-++|+.||.||||||++.-|...+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 328974389999899999999999975
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.99 E-value=0.11 Score=24.33 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+++|+.|+||||+++.++|-
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999999998999999998089
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.088 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5880999994899949889999919987
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
++|-++.+-|+-||||||..+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=90.86 E-value=0.087 Score=24.99 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 19999879999479999999489999962299956148
Q 000284 480 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI 517 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i 517 (1723)
++..+.|+.||||||+.+-|.. ...|.+.+...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HCCCCEEECHHHH
T ss_conf 7999989999999999999999---5799799603999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.85 E-value=0.066 Score=25.82 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCC
Q ss_conf 88479199998799994799999994899999622-9995614
Q 000284 475 TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-ALVFGKN 516 (1723)
Q Consensus 475 ~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~-v~i~G~~ 516 (1723)
.++.|.++-+.||+|+||||+.-.++.......|. |+|+...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8666336999648874889999999998754898899998976
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.048 Score=26.78 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
|.|+-|+.||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.80 E-value=0.095 Score=24.74 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+++++|..|+||||+++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.75 E-value=0.055 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+||+|.-|+||||+++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.73 E-value=0.076 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
..|+|+.||||||+-++|+-
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 89988999988999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.71 E-value=0.09 Score=24.90 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799994799999994
Q 000284 481 ILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~ 500 (1723)
|.|+-|+-||||||+...|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99837998788999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.63 E-value=0.13 Score=23.87 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
.+.++|+.|+||||+++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.62 E-value=0.083 Score=25.16 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|+-.||||||++.|+|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.59 E-value=0.086 Score=25.03 Aligned_cols=24 Identities=33% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
...|+|..|+||||+++.|.|...
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.55 E-value=0.098 Score=24.66 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
++|+-|+.||||||+-+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.50 E-value=0.088 Score=24.97 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.|.||+|+||||+.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.48 E-value=0.087 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
...+.||.|+||||+.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.48 E-value=0.1 Score=24.56 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=13.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1999987999947999999948
Q 000284 480 QILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~G 501 (1723)
.+..++||-||||||+.+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4899989999988999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.32 E-value=0.096 Score=24.73 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+|.|+.||||||+.+.|+--
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 989899999989999999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.26 E-value=0.085 Score=25.06 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 9999879999479999999-489999962
Q 000284 481 ILALLGHNGAGKSTTISML-VGLIPPTTG 508 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL-~Gl~~ptsG 508 (1723)
-..|||..|+||||+++-+ .|...||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.11 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=14.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 791999987999947999999948
Q 000284 478 ENQILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~G 501 (1723)
+|...++-|.-||||||.++.|.-
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 987899989988879999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.18 E-value=0.12 Score=24.16 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 91999987999947999999948999
Q 000284 479 NQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
....+|+||+|+||+|+++-|....+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.06 E-value=0.11 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
..|.|+.||||||+.++|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.05 E-value=0.078 Score=25.35 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=14.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4791999987999947999999948
Q 000284 477 YENQILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 477 ~~Gei~~LLG~NGAGKSTll~iL~G 501 (1723)
.++.+..|+||-||||||..+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6782899989999987999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=0.16 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=17.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 884791999987999947999999948
Q 000284 475 TLYENQILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 475 ~i~~Gei~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|+++.+.|+.|+||||+..-++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 985997999995899999999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.84 E-value=0.12 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 791999987999947999999948999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
+|.+.++-|..||||||.+++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.061 Score=26.05 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
++|+-|+.||||||+-+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.13 Score=23.80 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 588099999489994988999991998799518
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1416 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~ 1416 (1723)
.+|....+-|+-||||||..++|.-.+.. .|.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 97689999899888699999999999971-977
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.77 E-value=0.12 Score=24.15 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
+..+.|+.||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.77 E-value=0.12 Score=23.94 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 09999948999498899999199879951899968
Q 000284 1387 ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1421 (1723)
Q Consensus 1387 ei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g 1421 (1723)
.++.|.||.|+||||+.+.|...+. +...+.|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.71 E-value=0.097 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
.+.|+|+-|||||||++-|+|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.67 E-value=0.13 Score=23.78 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=13.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998799994799999994899
Q 000284 480 QILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.|..++||-||||||..+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.66 E-value=0.14 Score=23.60 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 919999879999479999999489
Q 000284 479 NQILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.-+.|+.|+=||||||++.-|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 159861179988899999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=89.61 E-value=0.13 Score=23.77 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+++|+-|+||||+++.|+|.
T Consensus 4 I~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999688
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.56 E-value=0.13 Score=23.89 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
...|+|+.|+||||+++.+++...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999999999999958998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.43 E-value=0.1 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
-.+++|+.|+||||+++.|++-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=89.41 E-value=0.14 Score=23.50 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099999489994988999991998
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
|=-++++|+-|+||||+++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.41 E-value=0.1 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 758809999948999498899999199
Q 000284 1383 VQAGECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1383 v~~Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+.++.++-|+||-||||||.-+.|+-.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 467828999899999879999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.36 E-value=0.12 Score=24.08 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999879999479999999489999962299956
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG 514 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G 514 (1723)
.+.|.||.|+||||+.+.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.22 E-value=0.15 Score=23.36 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880999994899949889999919987
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
+|..+.+-|+-||||||..+.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.21 E-value=0.16 Score=23.13 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=5.2
Q ss_pred CCEEEEECCCHHH
Q ss_conf 9699997179778
Q 000284 633 GRIILLTTHSMDE 645 (1723)
Q Consensus 633 ~rtiiltTH~mdE 645 (1723)
++-++++-...|.
T Consensus 162 ~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 162 KKEFYFVRTKVDS 174 (400)
T ss_dssp TCEEEEEECCHHH
T ss_pred CCCEEEEEECCCC
T ss_conf 9987999708632
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.10 E-value=0.13 Score=23.88 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 9999948999498899999199879951899968
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFG 1421 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g 1421 (1723)
.+-|.||.|+||||+.+.|++.... +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.091 Score=24.86 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=19.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 791999987999947999999948999
Q 000284 478 ENQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
++.+.++-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.91 E-value=0.15 Score=23.46 Aligned_cols=121 Identities=20% Similarity=0.317 Sum_probs=61.0
Q ss_pred EEEECCCCCCHHHHHHHH---HCCCCCCCCEEEECCCCCC-CCHHHHHCCEEEECCC-CCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999879999479999999---4899999622999561487-2189872352998258-8889999999999999995099
Q 000284 482 LALLGHNGAGKSTTISML---VGLIPPTTGDALVFGKNIT-ADMDEIRKGLGVCPQY-DILFPELTVREHLEMFAVLKGV 556 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL---~Gl~~ptsG~v~i~G~~i~-~~~~~~r~~iG~cpQ~-~~L~~~lTV~EhL~~~~~lkg~ 556 (1723)
.+++||-|+||||++..| +|... ..|++. +|..+. ....+..+.+.+-... ...|++ .
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~---------------~ 67 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKE-RRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG---------------H 67 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSS-SCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT---------------E
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-HHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC---------------C
T ss_conf 99994889809999999999709755-306622-221135626988873876875102222343---------------2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 978899999999999399821063237-8895689999999997269968660599889999999999999999728969
Q 000284 557 KEELLESVVAEMVDEVGLADKVNIVVR-ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635 (1723)
Q Consensus 557 ~~~~~~~~v~~~l~~~~L~~~~~~~~~-~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rt 635 (1723)
--...|++.. .+++-+.+=++ +.+.-|+++| .+.|+-+.+ +.+|+.+++.+..+.
T Consensus 68 -----------------~~n~iDtPGh~dF~~e~~~al~-----~~D~avlvvd-a~~Gv~~~t-~~~~~~~~~~~~p~~ 123 (267)
T d2dy1a2 68 -----------------RVFLLDAPGYGDFVGEIRGALE-----AADAALVAVS-AEAGVQVGT-ERAWTVAERLGLPRM 123 (267)
T ss_dssp -----------------EEEEEECCCSGGGHHHHHHHHH-----HCSEEEEEEE-TTTCSCHHH-HHHHHHHHHTTCCEE
T ss_pred -----------------CEEEECCCCHHHHHHHHHHHHC-----CCCCEEEEEE-CCCCCCCHH-HHHHHHHHHCCCCCC
T ss_conf -----------------1068806815543355654312-----4673389842-357742115-788776554044310
Q ss_pred EEEECCCHHH
Q ss_conf 9997179778
Q 000284 636 ILLTTHSMDE 645 (1723)
Q Consensus 636 iiltTH~mdE 645 (1723)
+++ ..||.
T Consensus 124 i~i--Nk~D~ 131 (267)
T d2dy1a2 124 VVV--TKLDK 131 (267)
T ss_dssp EEE--ECGGG
T ss_pred CCC--CCCCC
T ss_conf 133--32022
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.83 E-value=0.14 Score=23.56 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
++++|+-+||||||++.|++..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.78 E-value=0.14 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
..-|.||.|+||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.78 E-value=0.19 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999947999999948999
Q 000284 482 LALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
++++||-.||||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.76 E-value=0.14 Score=23.53 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999489994988999991
Q 000284 1388 CFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~ 1407 (1723)
++|+.|+.||||||..++|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.73 E-value=0.15 Score=23.37 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999947999999948
Q 000284 481 ILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~G 501 (1723)
|.|+.|..||||||..++|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.68 E-value=0.15 Score=23.36 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
..|+|+.||||||+-++|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.63 E-value=0.17 Score=22.98 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999948999498899999199
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+..++.++||-||||||+-+.|+-.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9948999899999889999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=88.62 E-value=0.15 Score=23.36 Aligned_cols=21 Identities=33% Similarity=0.397 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
..|.||.||||||+-+.|+-.
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 989899999989999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.17 Score=22.93 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879999479999999489
Q 000284 481 ILALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl 502 (1723)
+..++||-||||||..++|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.49 E-value=0.14 Score=23.49 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=63.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 47919999879999479999999489999962299956148721898723529982588889999999999999995099
Q 000284 477 YENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGV 556 (1723)
Q Consensus 477 ~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cpQ~~~L~~~lTV~EhL~~~~~lkg~ 556 (1723)
.++-+..+-||.|||||||+..+...+......|.--.-.+..... .+ .|..+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~----~~---~q~~v~------------------- 209 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDID----GI---GQTQVN------------------- 209 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCS----SS---EEEECB-------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCC----CC---CEEEEC-------------------
T ss_conf 4105489876787774477999866625787469996267434567----88---702655-------------------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf 97889999999999939982106323788956899999999972699686605998899999999999999997289699
Q 000284 557 KEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRII 636 (1723)
Q Consensus 557 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rti 636 (1723)
.. .|..---.+..+|=.+|++++..|.. |+.+.+. +++....|+-|
T Consensus 210 -------------------~~---------~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~---a~~aa~tGhlV 255 (401)
T d1p9ra_ 210 -------------------PR---------VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQI---AVQASLTGHLV 255 (401)
T ss_dssp -------------------GG---------GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHH---HHHHHHTTCEE
T ss_pred -------------------CC---------CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHH---HHHHHHCCCEE
T ss_conf -------------------87---------67799999999984138889845768---7599999---99997249858
Q ss_pred EEECCCHHHHHHHCCE
Q ss_conf 9971797789853489
Q 000284 637 LLTTHSMDEAEELGDR 652 (1723)
Q Consensus 637 iltTH~mdEa~~l~Dr 652 (1723)
+-|-|--+-++. -+|
T Consensus 256 ~tTlHa~~a~~~-~~R 270 (401)
T d1p9ra_ 256 MSTLHTNTAVGA-VTR 270 (401)
T ss_dssp EEEECCSSSHHH-HHH
T ss_pred EEEECCCCHHHH-HHH
T ss_conf 998336766766-543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.43 E-value=0.34 Score=20.93 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++-+++
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899798999999970
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.40 E-value=0.19 Score=22.69 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=19.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 588099999489994988999991998
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
++|.++.|-|+=||||||+.|-+..-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.38 E-value=0.17 Score=23.04 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+-|.||.|.||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.31 E-value=0.17 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
-+.++|+.|+||||+++.+++..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.13 E-value=0.17 Score=23.04 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
..|.|+.||||||+-++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.12 E-value=0.13 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCCCEE
Q ss_conf 9999948999498899999-1998799518
Q 000284 1388 CFGFLGTNGAGKTTTLSMI-SGEEYPTDGT 1416 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l-~g~~~p~sG~ 1416 (1723)
-+-+||..|+||||+++-+ .+...||-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 799998999988999998950982788886
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.09 E-value=0.12 Score=23.95 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=9.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999947999999948
Q 000284 481 ILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~G 501 (1723)
+.++-|.-||||||+++.|..
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999889999888999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.04 E-value=0.2 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
+..++|..|+||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.04 E-value=0.19 Score=22.67 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 880999994899949889999919987995189996
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIF 1420 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~ 1420 (1723)
+-.++.|+||-||||||.-+.|+..+ |-.++.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.01 E-value=0.19 Score=22.65 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=28.6
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 024345788479199998799994799999994899
Q 000284 468 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 468 av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
++| .=+.+-+||..++.|+.|+||||++.+++--.
T Consensus 33 ~ID-~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 33 VLD-LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHH-HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 564-12564578755686799988789999999977
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.18 Score=22.79 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+++
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999698999999970
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.86 E-value=0.11 Score=24.39 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099999489994988999991998
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+|-+.-|.|+.||||||+-+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.78 E-value=0.2 Score=22.52 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799994799999994
Q 000284 481 ILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~ 500 (1723)
|.|+.|..||||||..+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.75 E-value=0.16 Score=23.21 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+++++|+-+||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.69 E-value=0.19 Score=22.75 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 996866059988999999999999999972896999971797789
Q 000284 602 DSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEA 646 (1723)
Q Consensus 602 ~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~mdEa 646 (1723)
...++++||- -.+.......++.++........++++|+..+..
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCEEEEEHHH-HHCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 7228861434-4312147898764112477644788614876656
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.60 E-value=0.21 Score=22.34 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999947999999948
Q 000284 481 ILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~G 501 (1723)
|.|+.|..||||||..+++.-
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.48 E-value=0.22 Score=22.27 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998799994799999994
Q 000284 482 LALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~ 500 (1723)
.+++||-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.46 E-value=0.31 Score=21.20 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHC-C----CCCCCCEEE
Q ss_conf 99987999947999999948-9----999962299
Q 000284 482 LALLGHNGAGKSTTISMLVG-L----IPPTTGDAL 511 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G-l----~~ptsG~v~ 511 (1723)
.+++|..|+||||+++-+++ - +.||.|...
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 99999999799999999973998854576645200
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.43 E-value=0.15 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
..|.||-||||||+.+.|+-
T Consensus 6 I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999998999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.31 E-value=0.26 Score=21.69 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
.+-|.||.|+||||+.+.++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.31 E-value=0.19 Score=22.74 Aligned_cols=115 Identities=21% Similarity=0.371 Sum_probs=60.7
Q ss_pred EEEECCCCCCHHHHHHHH---HCCCCCCCCEEEECCCCC-CCCHHHHHCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999879999479999999---489999962299956148-721898723529982588-889999999999999995099
Q 000284 482 LALLGHNGAGKSTTISML---VGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYD-ILFPELTVREHLEMFAVLKGV 556 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL---~Gl~~ptsG~v~i~G~~i-~~~~~~~r~~iG~cpQ~~-~L~~~lTV~EhL~~~~~lkg~ 556 (1723)
.+++||-|||||||...| +|.+.. .|++. +|..+ ..+..+..+.+.+-...- .-|.+.
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~--------------- 71 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDH--------------- 71 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCCCCSEEEEEETTE---------------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC-CCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCE---------------
T ss_conf 999958989989999999996485340-23365-1846985658887518860011234315983---------------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 978899999999999399821063237-8895689999999997269968660599889999999999999999728969
Q 000284 557 KEELLESVVAEMVDEVGLADKVNIVVR-ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRI 635 (1723)
Q Consensus 557 ~~~~~~~~v~~~l~~~~L~~~~~~~~~-~LSGG~krkLsiA~Alig~p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rt 635 (1723)
--...|++.. .+++-+.+=|+ +.+.-|+++| +..|+.+.+ +.+|+..++.+--+-
T Consensus 72 -----------------~~n~iDtPG~~dF~~e~~~~l~-----~~D~avlVvd-a~~Gv~~~T-~~~w~~a~~~~lP~i 127 (276)
T d2bv3a2 72 -----------------RINIIDAPGHVDFTIEVERSMR-----VLDGAIVVFD-SSQGVEPQS-ETVWRQAEKYKVPRI 127 (276)
T ss_dssp -----------------EEEEECCCSSSSCSTTHHHHHH-----HCCEEEEEEE-TTTSSCHHH-HHHHHHHHTTTCCEE
T ss_pred -----------------EEEEECCCCHHHHHHHHHHHHH-----HHHHEEEECC-CCCCCCHHH-HHHHHHHHHCCCCEE
T ss_conf -----------------8999527860226999999999-----6300577322-567744669-999999998599979
Q ss_pred EE
Q ss_conf 99
Q 000284 636 IL 637 (1723)
Q Consensus 636 ii 637 (1723)
+.
T Consensus 128 ~f 129 (276)
T d2bv3a2 128 AF 129 (276)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=87.26 E-value=0.27 Score=21.64 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=11.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9199998799994799999994
Q 000284 479 NQILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~ 500 (1723)
|--.+|+||-||||||..+.|+
T Consensus 3 ~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 6389998999998899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.22 E-value=0.2 Score=22.60 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+.++|..|+||||+++.|.+.
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999668
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.16 E-value=0.17 Score=22.96 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|+.|+||||+++-+++
T Consensus 3 ivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999965
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.15 E-value=0.21 Score=22.33 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++||-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.14 E-value=0.18 Score=22.77 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=27.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 59975880999994899949889999919987
Q 000284 1380 TFSVQAGECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1380 s~~v~~Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
=+.+.+|+..+|.|+.|.||||++.++..-..
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 25645787556867999887899999999775
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.32 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9758809999948999498899999199
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
.+++|+++-+.||.|+||||+.--++..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=87.07 E-value=0.26 Score=21.77 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 58809999948999498899999199
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++|-...|+||-|+||||.-+.|+--
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.04 E-value=0.26 Score=21.68 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=11.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 79199998799994799999994
Q 000284 478 ENQILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 478 ~Gei~~LLG~NGAGKSTll~iL~ 500 (1723)
+|.+.-|.|..||||||+.+.|.
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699998999999899999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=86.99 E-value=0.24 Score=22.04 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+++|..|+||||+++-+++-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.91 E-value=0.24 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++||.|.-||||||..+++.-.
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.87 E-value=0.28 Score=21.52 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
...|.||.|+||||+.+.++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.83 E-value=0.29 Score=21.38 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=13.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8479199998799994799999994
Q 000284 476 LYENQILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 476 i~~Gei~~LLG~NGAGKSTll~iL~ 500 (1723)
+++|+++-+.|+.|+||||+..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 8699699998389998899999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.76 E-value=0.16 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999489994988999991998
Q 000284 1387 ECFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1387 ei~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
-++++-|+-||||||+.+.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=86.75 E-value=0.19 Score=22.71 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
.+.++|..|+||||+++-+++...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.74 E-value=0.25 Score=21.87 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++||.|.-||||||..+++...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.71 E-value=0.23 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
-.+++|..|+||||+++-|.|--
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.68 E-value=0.19 Score=22.67 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|+.|+||||+++-+++
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999971
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.63 E-value=0.31 Score=21.20 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=14.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8479199998799994799999994
Q 000284 476 LYENQILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 476 i~~Gei~~LLG~NGAGKSTll~iL~ 500 (1723)
+++|+++.+.|+.|+||||+..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6288599999179999899999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=86.49 E-value=0.21 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
.-|+|+.||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.38 E-value=0.25 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHH
Q ss_conf 88479199998799994799999
Q 000284 475 TLYENQILALLGHNGAGKSTTIS 497 (1723)
Q Consensus 475 ~i~~Gei~~LLG~NGAGKSTll~ 497 (1723)
.+++|+++.+.|+.|+||||+.-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHH
T ss_conf 95588799998589898899999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.11 Score=24.34 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
.++|+|+-++||||+++.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.23 E-value=0.25 Score=21.84 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEEC
Q ss_conf 999879999479999999489999962299956148721898723529982
Q 000284 482 LALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP 532 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cp 532 (1723)
+||+|-=.+||||++|.|||.-+ .+..+..+| +..++|+..
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~~------~v~nypftT----~~pn~Gv~~ 43 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVDV------EIANYPFTT----IEANVGVTY 43 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC------------------------CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCC------CHHCCCCCC----CCCCCCEEE
T ss_conf 76889999989999999978897------032699775----558626232
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.20 E-value=0.15 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880999994899949889999919987
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
++...++-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=86.19 E-value=0.3 Score=21.30 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=28.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEECCEEC
Q ss_conf 588099999489994988999991998799--51899968508
Q 000284 1384 QAGECFGFLGTNGAGKTTTLSMISGEEYPT--DGTAFIFGKDI 1424 (1723)
Q Consensus 1384 ~~Gei~gllG~NGAGKTTll~~l~g~~~p~--sG~i~i~g~~i 1424 (1723)
++|-++=|.|..||||||+-+.|.-.+... .-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.13 E-value=0.13 Score=23.77 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
-.+|+|+-++||||++|.|+|.-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=86.13 E-value=0.2 Score=22.52 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994899949889999919987
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
+.++|+.|+||||+++.+++...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~~ 25 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGEI 25 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999965988
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.04 E-value=0.3 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
|.++.||-||||+|.-+.|+--+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.93 E-value=0.21 Score=22.34 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=58.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 80999994899949889999919987995189996850899968760543998058987999999999999999709990
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE 1465 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~~g~~~ 1465 (1723)
+-.+-+.||.|+|||||+..+...+.....+|.--..++... ...+. |..
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~----~~~~~---q~~----------------------- 207 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD----IDGIG---QTQ----------------------- 207 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC----CSSSE---EEE-----------------------
T ss_pred HCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC----CCCCC---EEE-----------------------
T ss_conf 054898767877744779998666257874699962674345----67887---026-----------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 55999999999874995201899899895699999999999069988999387999999999999999999874169969
Q 000284 1466 YRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1545 (1723)
Q Consensus 1466 ~~~~~~~~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~t 1545 (1723)
...... .++ --.+..+|=.+|++++..|-. |+.+.+...+.- ..|. -
T Consensus 208 ---------------v~~~~~---~~~------~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-----~tGh-l 254 (401)
T d1p9ra_ 208 ---------------VNPRVD---MTF------ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-----LTGH-L 254 (401)
T ss_dssp ---------------CBGGGT---BCH------HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-----HTTC-E
T ss_pred ---------------ECCCCC---CCH------HHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH-----HCCC-E
T ss_conf ---------------558767---799------999999984138889845768---759999999997-----2498-5
Q ss_pred EEEECCCHHHHH
Q ss_conf 999437788899
Q 000284 1546 VILTTHSMNEAQ 1557 (1723)
Q Consensus 1546 iilttH~m~e~e 1557 (1723)
|+-|-|--+-..
T Consensus 255 V~tTlHa~~a~~ 266 (401)
T d1p9ra_ 255 VMSTLHTNTAVG 266 (401)
T ss_dssp EEEEECCSSSHH
T ss_pred EEEEECCCCHHH
T ss_conf 899833676676
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.76 E-value=0.28 Score=21.51 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.69 E-value=0.31 Score=21.24 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
++.|+||-||||||.-+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.64 E-value=0.32 Score=21.14 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
+.++-||-||||||..++|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.62 E-value=0.3 Score=21.30 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++|+.|+||||+++.+.+..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999997197
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.57 E-value=0.28 Score=21.47 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
..|+|+.|+||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.57 Score=19.38 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC-----CCCCCEE
Q ss_conf 999948999498899999199-----8799518
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE-----EYPTDGT 1416 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~-----~~p~sG~ 1416 (1723)
+.++|..|+||||+++-+++. ..||-|.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 999998997989999999709998763761331
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.51 E-value=0.14 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999947999999948999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
|.|+-|++||||||+.+.|.-.+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.47 E-value=0.23 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
.+.|.||-||||||+.+.|+--
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.57 Score=19.38 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCEEEE
Q ss_conf 9999948999498899999199-----879951899
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE-----EYPTDGTAF 1418 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~-----~~p~sG~i~ 1418 (1723)
-+.++|..|+||||+++-+++. ..|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 899999999799999999973998854576645200
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.41 E-value=0.32 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
++.+.|..|+||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.29 E-value=0.38 Score=20.57 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCC
Q ss_conf 99987999947999999948999-996
Q 000284 482 LALLGHNGAGKSTTISMLVGLIP-PTT 507 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~-pts 507 (1723)
.+++|+-.|||||+++.|.|.-- |++
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~~lP~~ 53 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRDFLPRG 53 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999818989799999999689978878
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.17 E-value=0.25 Score=21.85 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999973
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=85.13 E-value=0.35 Score=20.88 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
..|+|+-||||||..+.|+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999987999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.36 Score=20.80 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++|+.|+||||+++.+.+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.58 Score=19.35 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999947999999948999
Q 000284 482 LALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
.+++|..|+||||+++.+++...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.88 E-value=0.36 Score=20.75 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
+.++-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.81 E-value=0.57 Score=19.41 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCEEEEC
Q ss_conf 9999879999479999999489999962299956148721898723529982
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP 532 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~~i~~~~~~~r~~iG~cp 532 (1723)
-+||+|-=.+||||+++.||+-- +.+..|..++ +..++|+++
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~------~~~~~ypf~t----i~pn~gvv~ 45 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG------IEAANYPFCT----IEPNTGVVP 45 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------------CCCC----CCCCSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------CCCCCCCCCC----CCCCEEEEE
T ss_conf 48888999998899999997799------7413699888----778458996
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.79 E-value=0.36 Score=20.77 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+++|+.|+||||+++-+++-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.63 E-value=0.35 Score=20.88 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++|+.|+||||+++.+++..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.58 E-value=0.38 Score=20.60 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
..|+|+-||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=0.65 Score=19.01 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+++
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.52 E-value=0.32 Score=21.15 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 999879999479999999489999962
Q 000284 482 LALLGHNGAGKSTTISMLVGLIPPTTG 508 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ptsG 508 (1723)
..|||..|+||||+++.+.....||.|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 999999998889999988408979724
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=84.46 E-value=0.42 Score=20.32 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998799994799999994
Q 000284 482 LALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~ 500 (1723)
.+.+||-.+|||||++.|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999378989899999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=84.37 E-value=0.4 Score=20.42 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999948999498899999199
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
.-+.|+.||-||||||++.-|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 159861179988899999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=84.29 E-value=0.39 Score=20.53 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999489994988999991
Q 000284 1388 CFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~ 1407 (1723)
|.++.||.||||+|.-+.|.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89977999889899999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.26 E-value=0.44 Score=20.16 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=11.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 758809999948999498899999
Q 000284 1383 VQAGECFGFLGTNGAGKTTTLSMI 1406 (1723)
Q Consensus 1383 v~~Gei~gllG~NGAGKTTll~~l 1406 (1723)
+++|+++-+.|+.|+|||++...+
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~ 57 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTL 57 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 768979999889988788999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.21 E-value=0.44 Score=20.16 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=18.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8479199998799994799999994899
Q 000284 476 LYENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 476 i~~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
..+|.+..|-|+=||||||+.+-++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7998299996687765889999987642
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.12 E-value=0.5 Score=19.77 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+++
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.12 E-value=0.31 Score=21.22 Aligned_cols=19 Identities=42% Similarity=0.622 Sum_probs=9.1
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9987999947999999948
Q 000284 483 ALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~G 501 (1723)
+++|+.|+||||+++.+.+
T Consensus 20 ~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 20 LLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999899999999964
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.38 Score=20.61 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+++
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799899999999980
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.97 E-value=0.39 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999498899999199
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~ 1409 (1723)
.+.++|..|+||||+++.+++.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.96 E-value=0.45 Score=20.12 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC-CCC
Q ss_conf 9998799994799999994899-999
Q 000284 482 LALLGHNGAGKSTTISMLVGLI-PPT 506 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~-~pt 506 (1723)
.+++|+-.|||||+++.|+|.- .|+
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~~lP~ 54 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRDFLPR 54 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99976898979999999968986887
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.81 E-value=0.55 Score=19.48 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9758809999948999498899999199
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
.+++|+++-|.|+.|+||||+..-++-.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9869969999838999889999999998
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.78 E-value=0.38 Score=20.63 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+++|..|+||||+++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.77 E-value=0.32 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.|++||-++|||||++.|++..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999588980999999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.68 E-value=0.31 Score=21.22 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999879999479999999489999
Q 000284 481 ILALLGHNGAGKSTTISMLVGLIPP 505 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~~p 505 (1723)
-.||+|-=.+||||+++.||+--.|
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~ 36 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLG 36 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 7999789999899999999778987
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=83.68 E-value=0.38 Score=20.62 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
.+.++|+.|+||||+++.+.+...
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~~ 41 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASEDI 41 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999964877
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.67 E-value=0.72 Score=18.71 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899499999999973
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.59 E-value=0.41 Score=20.38 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+.++|..|+||||+++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.59 E-value=0.38 Score=20.65 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998799994799999994899
Q 000284 480 QILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.-+.|+||-|+|||.+.+.|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 669998999988889999986213
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.48 E-value=0.45 Score=20.13 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899949889999919987
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
++.+-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.44 E-value=0.44 Score=20.16 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999947999999948999
Q 000284 482 LALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
.+++|..|+||||+++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.43 E-value=0.4 Score=20.46 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=8.5
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 998799994799999994
Q 000284 483 ALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~ 500 (1723)
.++|+-||||||..+.|+
T Consensus 4 ~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 4 ILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 998799999899999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.39 E-value=0.33 Score=21.04 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=30.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEE
Q ss_conf 97588099999489994988999991998799518-9996850
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT-AFIFGKD 1423 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~~l~g~~~p~sG~-i~i~g~~ 1423 (1723)
.++.|.+.-+.||+|+||||+.-.++.......|. ++|+...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8666336999648874889999999998754898899998976
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.36 E-value=0.41 Score=20.40 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=9.4
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9987999947999999948
Q 000284 483 ALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~G 501 (1723)
.|-||.|+||||+.+.++.
T Consensus 37 ll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 37 LFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9989999984999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.35 E-value=0.41 Score=20.36 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++|..|+||||+++.+++..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.34 E-value=0.076 Score=25.41 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
++|+|.-|+||||+++.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.30 E-value=0.48 Score=19.94 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=60.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH-------
Q ss_conf 9999948999498899999199879951899968508999687605439980589879999999999999997-------
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI------- 1460 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~~p~sG~i~i~g~~i~~~~~~~~~~iG~~pQ~~~l~~~lTv~e~l~~~~~~------- 1460 (1723)
++||-|+-|+||||+-+.|.-.+... ......+..++.++- | +|-.|...+-...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---------------~~~~~~v~~iS~Ddf-Y--~t~~~r~~L~~~~~~~pl~~ 90 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---------------YGGEKSIGYASIDDF-Y--LTHEDQLKLNEQFKNNKLLQ 90 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---------------HGGGSCEEEEEGGGG-B--CCHHHHHHHHHHTTTCGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---------------HCCCCCEEEECCCCC-C--CCHHHHHHHHHHCCCCCCCE
T ss_conf 99837998788999999999999987---------------277860676356777-7--88899999852135553110
Q ss_pred -CCCCHHHHHHHHHHHHHHCCCC-C-----CCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf -0999055999999999874995-2-----01899899895--699999999999069988999387999999
Q 000284 1461 -KGVAEYRMDDVVMEKLVEFDLL-K-----HAKKPSFTLSG--GNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1524 (1723)
Q Consensus 1461 -~g~~~~~~~~~~~~~l~~~~L~-~-----~~~~~~~~lSg--G~krrl~iA~al~~~p~illLDEPt~GLDp 1524 (1723)
||.|....-+...+.+..+--. + -..-+.-.-|- |..-|..-...+.+.|+|+|+.-=..|..|
T Consensus 91 ~RG~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p 163 (286)
T d1odfa_ 91 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 163 (286)
T ss_dssp SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCCEEEEECHHHCCCC
T ss_conf 0478740348899999999974023124566668846777515532237655200589878997002204541
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.26 E-value=0.46 Score=20.05 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=17.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9199998799994799999994
Q 000284 479 NQILALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 479 Gei~~LLG~NGAGKSTll~iL~ 500 (1723)
+.++.+.|+.|+||||+++.++
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9879998699982999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.21 E-value=0.42 Score=20.29 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+-|-||.|.||||+.+.++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.04 E-value=0.54 Score=19.58 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994899949889999919987
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEEY 1411 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~~ 1411 (1723)
+|++|+=.||||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.96 E-value=0.45 Score=20.11 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
..|+|+-||||||..+.|+-.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999979999999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.95 E-value=0.28 Score=21.53 Aligned_cols=19 Identities=47% Similarity=0.531 Sum_probs=9.2
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9994899949889999919
Q 000284 1390 GFLGTNGAGKTTTLSMISG 1408 (1723)
Q Consensus 1390 gllG~NGAGKTTll~~l~g 1408 (1723)
.++|+.|+||||+++.+.+
T Consensus 21 ~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 21 LILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEETTSSHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999988999988733
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.84 E-value=0.51 Score=19.72 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=16.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1999987999947999999948
Q 000284 480 QILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~G 501 (1723)
.|.||.|.-||||||..++|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.70 E-value=0.47 Score=20.00 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97588099999489994988999991
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~~l~ 1407 (1723)
.+++|+++-+.|+.|+||||+.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.63 E-value=0.42 Score=20.33 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEE
Q ss_conf 999948999498899999199879951899
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEEYPTDGTAF 1418 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~~p~sG~i~ 1418 (1723)
+.++|..|+||||+++.+.....|+.|...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~~ 34 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVE 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 999999998889999988408979724799
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=82.56 E-value=0.51 Score=19.73 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
...|+||-||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.44 E-value=0.8 Score=18.39 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|.-|+||||+++-+++
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899088999999971
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.40 E-value=0.52 Score=19.66 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
..|+||-||||||.-+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.39 E-value=0.56 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999948999498899999199
Q 000284 1386 GECFGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1386 Gei~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+.++.+.||.|.||||+++.++..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 987999869998299999999997
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.36 E-value=0.26 Score=21.77 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999479999999489
Q 000284 482 LALLGHNGAGKSTTISMLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl 502 (1723)
.+++|..|+||||+++-+.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.28 E-value=0.53 Score=19.62 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++-||-||||||.-+.|+..+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=0.64 Score=19.05 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++|+.|+||||+++.+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.08 E-value=0.41 Score=20.37 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+++
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.06 E-value=0.46 Score=20.02 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=30.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC-CCCEEEEECCEE
Q ss_conf 975880999994899949889999919987-995189996850
Q 000284 1382 SVQAGECFGFLGTNGAGKTTTLSMISGEEY-PTDGTAFIFGKD 1423 (1723)
Q Consensus 1382 ~v~~Gei~gllG~NGAGKTTll~~l~g~~~-p~sG~i~i~g~~ 1423 (1723)
.+++|.+.-+-||.|+||||+.-.++.... +..--++++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.90 E-value=0.83 Score=18.26 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++-+.+
T Consensus 8 i~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899789999999971
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.80 E-value=0.53 Score=19.60 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
..++||-||||||.-+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999879999989999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=81.74 E-value=0.85 Score=18.22 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=10.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8809999948999498899999
Q 000284 1385 AGECFGFLGTNGAGKTTTLSMI 1406 (1723)
Q Consensus 1385 ~Gei~gllG~NGAGKTTll~~l 1406 (1723)
.|.-+-+.|+.|+||||+.-.+
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l 35 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDL 35 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
T ss_conf 9999999818999989999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.67 E-value=0.42 Score=20.34 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=15.5
Q ss_pred CCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 96866059988999999999999999972896999971797
Q 000284 603 SKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSM 643 (1723)
Q Consensus 603 p~vliLDEPTsGlDp~srr~iw~~l~~~~~~rtiiltTH~m 643 (1723)
.+++++||.- +|...+...+...+........++++|+..
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHCCCCCCCEEEEECCCCH
T ss_conf 5999982443-232157787752011233333665314743
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.64 E-value=0.63 Score=19.12 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998799994799999994
Q 000284 482 LALLGHNGAGKSTTISMLV 500 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~ 500 (1723)
.+++|..|+||||+++-++
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.55 E-value=0.86 Score=18.17 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.51 E-value=0.84 Score=18.25 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHH-HHCCC
Q ss_conf 99987999947999999-94899
Q 000284 482 LALLGHNGAGKSTTISM-LVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~i-L~Gl~ 503 (1723)
.+++|+.|+||||+++- +.|..
T Consensus 9 i~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999299999999971998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.47 E-value=0.55 Score=19.51 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799994799999994899
Q 000284 481 ILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 481 i~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
..+|+|+-||||||..+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.41 E-value=0.54 Score=19.55 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=30.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 998899938799999999999999999987416996999943778889
Q 000284 1509 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1556 (1723)
Q Consensus 1509 ~p~illLDEPt~GLDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~ 1556 (1723)
..+++++||-- ++...+...+...+.+.. ..+.+++++++.+.+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~---~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS---NSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT---TTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHCCCCC---CCEEEEECCCCHHHH
T ss_conf 35999982443-232157787752011233---333665314743021
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=81.40 E-value=0.68 Score=18.89 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479199998799994799999994899
Q 000284 477 YENQILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 477 ~~Gei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.++|...+.|.+|||||+..+++.-.+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 898189997389899899999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.29 E-value=0.35 Score=20.81 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=10.0
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9987999947999999948
Q 000284 483 ALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~G 501 (1723)
.++|..|+||||+++.+++
T Consensus 16 vlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 16 LMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEETTSSHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999878999999844
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.25 E-value=0.63 Score=19.10 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=9.6
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9987999947999999948
Q 000284 483 ALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 483 ~LLG~NGAGKSTll~iL~G 501 (1723)
.++|+-||||||..+.|+-
T Consensus 6 vl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 6 VLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9989999998999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.10 E-value=0.56 Score=19.44 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|.-|+||||+++.+++
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.09 E-value=0.64 Score=19.04 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++-+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999498999999972
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.03 E-value=0.52 Score=19.65 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCEEE
Q ss_conf 9999948999498899999---19987995189
Q 000284 1388 CFGFLGTNGAGKTTTLSMI---SGEEYPTDGTA 1417 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l---~g~~~p~sG~i 1417 (1723)
-++++|+-|||||||...| +|.+.. .|++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCE
T ss_conf 9999958989989999999996485340-2336
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.02 E-value=0.53 Score=19.62 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999489994988999991
Q 000284 1388 CFGFLGTNGAGKTTTLSMIS 1407 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~ 1407 (1723)
.++++|+-|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.98 E-value=0.59 Score=19.30 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999498899999199
Q 000284 1389 FGFLGTNGAGKTTTLSMISGE 1409 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~ 1409 (1723)
+.++|+-|+||||+++.+++.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.48 Score=19.94 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999399999999962
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.62 E-value=0.35 Score=20.87 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799994799999994899
Q 000284 482 LALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
.-|-||.|.||||+.++++..+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.62 E-value=0.58 Score=19.32 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994988999991998
Q 000284 1388 CFGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1388 i~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
...|+||-||||||.-+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=80.60 E-value=0.76 Score=18.55 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4791999987999947999999948999
Q 000284 477 YENQILALLGHNGAGKSTTISMLVGLIP 504 (1723)
Q Consensus 477 ~~Gei~~LLG~NGAGKSTll~iL~Gl~~ 504 (1723)
.+.|...+.|.+|||||+..+++...+.
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8991799971898888999999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.47 E-value=0.93 Score=17.93 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+|||++++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899789999999973
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.45 E-value=0.6 Score=19.25 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987999947999999948
Q 000284 482 LALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~iL~G 501 (1723)
.+++|..|+||||+++.+++
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999972
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.45 E-value=0.88 Score=18.10 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHH-HHHCC
Q ss_conf 9998799994799999-99489
Q 000284 482 LALLGHNGAGKSTTIS-MLVGL 502 (1723)
Q Consensus 482 ~~LLG~NGAGKSTll~-iL~Gl 502 (1723)
.+++|..|+|||++++ ++.|-
T Consensus 5 ivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999959899999997299
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.40 E-value=0.66 Score=18.95 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99994899949889999919
Q 000284 1389 FGFLGTNGAGKTTTLSMISG 1408 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g 1408 (1723)
+.++|..|+||||+++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.34 E-value=0.57 Score=19.42 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199998799994799999994899
Q 000284 480 QILALLGHNGAGKSTTISMLVGLI 503 (1723)
Q Consensus 480 ei~~LLG~NGAGKSTll~iL~Gl~ 503 (1723)
-+++++|+-++||||++|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.27 E-value=0.63 Score=19.10 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994988999991998
Q 000284 1389 FGFLGTNGAGKTTTLSMISGEE 1410 (1723)
Q Consensus 1389 ~gllG~NGAGKTTll~~l~g~~ 1410 (1723)
+.++|+.|+||||+++.+.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.07 E-value=0.53 Score=19.60 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=27.2
Q ss_pred CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 10243457884791999987999947999999948
Q 000284 467 CAVNSLQLTLYENQILALLGHNGAGKSTTISMLVG 501 (1723)
Q Consensus 467 ~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~G 501 (1723)
+|+|. -+.+-+||..++.|+.|.||||++..++-
T Consensus 57 raID~-l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 57 KVVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHHH-HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEE-ECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 20310-25636788777667999898999999999
|