Citrus Sinensis ID: 000318
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1675 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NTI5 | 1447 | Sister chromatid cohesion | yes | no | 0.605 | 0.701 | 0.246 | 1e-71 | |
| Q5F3U9 | 1412 | Sister chromatid cohesion | yes | no | 0.605 | 0.718 | 0.246 | 1e-71 | |
| Q4VA53 | 1446 | Sister chromatid cohesion | yes | no | 0.605 | 0.701 | 0.244 | 6e-71 | |
| Q6TRW4 | 1447 | Sister chromatid cohesion | yes | no | 0.605 | 0.701 | 0.244 | 9e-71 | |
| Q5U241 | 1464 | Sister chromatid cohesion | N/A | no | 0.607 | 0.694 | 0.238 | 1e-70 | |
| Q498H0 | 1448 | Sister chromatid cohesion | N/A | no | 0.607 | 0.702 | 0.240 | 1e-69 | |
| Q29RF7 | 1337 | Sister chromatid cohesion | no | no | 0.601 | 0.753 | 0.25 | 3e-66 | |
| A4L9P7 | 1333 | Sister chromatid cohesion | no | no | 0.601 | 0.756 | 0.249 | 4e-66 | |
| A1L1F4 | 1320 | Sister chromatid cohesion | no | no | 0.595 | 0.756 | 0.243 | 1e-65 | |
| Q5F3V3 | 1330 | Sister chromatid cohesion | no | no | 0.606 | 0.763 | 0.246 | 6e-65 |
| >sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1 | Back alignment and function desciption |
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Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 267/1085 (24%), Positives = 489/1085 (45%), Gaps = 70/1085 (6%)
Query: 9 LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNA---IVQPVLL 65
+KE+ K+ +K+ +V+ LK +++Q E + +LN + L
Sbjct: 19 VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKELYLNLALHLASDFFL 69
Query: 66 KHQDKDVKLLVATCICEITRITAPEAPY-SDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV 124
KH DKDV+LLVA C+ +I RI APEAPY S D LKDIF I GL+DT P F R
Sbjct: 70 KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129
Query: 125 VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 183
+LE +A +S + +LE +E+ ++Y T F+V ++ H + V M +M ++ E +
Sbjct: 130 YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189
Query: 184 DIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDSRPG 239
+ ++LL +L L +N N A LA ++++ A +E I F M G +
Sbjct: 190 TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249
Query: 240 HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299
++I ++Y +L V+P L +L ++ + RL+ V L+ +F S
Sbjct: 250 DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309
Query: 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 359
Q ++ +L R D V +R+ ++ CL+ P A + L R D +E +R
Sbjct: 310 QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAK--DLTEYLKVRSHDPEEAIR 367
Query: 360 KQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419
V+ I A + + + V ER DK V++ M LA I++ L++ G
Sbjct: 368 HDVIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGK 427
Query: 420 INQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI 478
+ WI K+L Y +E + + P +R++ +++ D
Sbjct: 428 DAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLN 487
Query: 479 EMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+KAL ++ + + L+ +++ L L +Q D I K++ V++R+ +P KA+
Sbjct: 488 AVKALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVM----VITRNLPDPGKAQ 543
Query: 538 ENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLSM 594
+ Q+ D + K L L+ S QA ++ K LG K FL +
Sbjct: 544 DFMKKFTQVLEDDEKIRKQLEVLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKF 603
Query: 595 ---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCMDILGILARFSPLL 642
+ + + + E + ++ +V + Q +++ +++L +L+ P+
Sbjct: 604 LLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPIS 663
Query: 643 LGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 700
E E L+ LK ++E + E L + G I E S++ +L +G
Sbjct: 664 FHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKSKKGPP 723
Query: 701 RQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFE 758
RQAKYA+H + AI + + +++ L L+ HL L ++G IA A F
Sbjct: 724 RQAKYAIHCIHAIFSSKETQ-FAQIFEPLHKSLDPSNLEHLITPLVTIGHIALLAPDQFA 782
Query: 759 TR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGIKTLVKSYLPVKDA 814
+S + FI +L T W ++ S ++KI IK +V+ L +K+
Sbjct: 783 APLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETMVKIQAIKMMVRWLLGMKNN 842
Query: 815 HIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ--WDHKIPVD 872
H + G L + + S G+++E + S D + LRLA+ A+++L+++ + I ++
Sbjct: 843 HSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLE 902
Query: 873 VFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLF-GITESKSPEFEENL 929
+ L Q +++F K+H+ + L +Y CA + + + L
Sbjct: 903 QYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCL 962
Query: 930 ADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVY 989
I + + + +V S PEY++PY +H AH PD + +D++ + V
Sbjct: 963 VKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD--PDYVKVQDIEQLKDVK 1018
Query: 990 CRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIV---DAAKSKNSHAICD 1046
L+F++ +L+ K+E+ S + I + +IK ++D DA ++ + +CD
Sbjct: 1019 ECLWFVLEILMAKNEN--------NSHAFIRKMVENIKQTKDAQGPDDAKMNEKLYTVCD 1070
Query: 1047 LGLSI 1051
+ ++I
Sbjct: 1071 VAMNI 1075
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Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells. Homo sapiens (taxid: 9606) |
| >sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 | Back alignment and function description |
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| >sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1675 | ||||||
| 147777785 | 1922 | hypothetical protein VITISV_030148 [Viti | 0.972 | 0.847 | 0.665 | 0.0 | |
| 255585406 | 1735 | androgen induced inhibitor of proliferat | 0.964 | 0.930 | 0.646 | 0.0 | |
| 224139450 | 1417 | predicted protein [Populus trichocarpa] | 0.838 | 0.991 | 0.719 | 0.0 | |
| 356522079 | 1641 | PREDICTED: sister chromatid cohesion pro | 0.967 | 0.987 | 0.639 | 0.0 | |
| 356564452 | 1642 | PREDICTED: sister chromatid cohesion pro | 0.967 | 0.987 | 0.632 | 0.0 | |
| 449443672 | 1692 | PREDICTED: sister chromatid cohesion pro | 0.896 | 0.887 | 0.654 | 0.0 | |
| 224089565 | 1411 | predicted protein [Populus trichocarpa] | 0.789 | 0.936 | 0.696 | 0.0 | |
| 356557993 | 1656 | PREDICTED: sister chromatid cohesion pro | 0.972 | 0.983 | 0.606 | 0.0 | |
| 356532370 | 1648 | PREDICTED: sister chromatid cohesion pro | 0.969 | 0.985 | 0.605 | 0.0 | |
| 186530158 | 1607 | sister chromatid cohesion protein PDS5 [ | 0.946 | 0.986 | 0.585 | 0.0 |
| >gi|147777785|emb|CAN75734.1| hypothetical protein VITISV_030148 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 2190 bits (5674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1130/1698 (66%), Positives = 1348/1698 (79%), Gaps = 69/1698 (4%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K +QQL++VGSKLE PP+TKD LVKLLKQAATCL+EL+QSP ASILE++QP LNAIV
Sbjct: 56 MDQKRQQQLRDVGSKLENPPATKDALVKLLKQAATCLTELDQSPSASILESLQPSLNAIV 115
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
+P LLKHQD+DVKLLVATCICEITRITAPEAPYSDDVLKDIF+LIV TFSGL DT GP+F
Sbjct: 116 KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFRLIVSTFSGLSDTNGPAF 175
Query: 121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
GRRVVILETLA+YRSCVVMLDLECD+LVNEM+ TFF+VA DDHPESVL+SMQTIM+VLLE
Sbjct: 176 GRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFFSVARDDHPESVLTSMQTIMVVLLE 235
Query: 181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
ESED++EDLL +LS LGRNK+D ARRLAMNVIE CA KLE GIKQFLVSS+SGD+R
Sbjct: 236 ESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVIEHCAAKLEPGIKQFLVSSISGDNR 295
Query: 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
+S IDYHEVIYD+YRC+PQILSGV PYLTGELLTD LDTRLKAV LVGDLFA+PG A
Sbjct: 296 SMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVGDLFALPGLAI 355
Query: 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
+E F +FSEFLKRL DR+V VRMSVLEHVKSCLL++PSRA+APQI++ALCDRLLD+DEN
Sbjct: 356 SEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISALCDRLLDYDEN 415
Query: 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
VRKQVVAVICDVACH+L+SIPVET KLVAERLRDKSVLVK+YT+ERLA+I+ CLR +
Sbjct: 416 VRKQVVAVICDVACHSLSSIPVETXKLVAERLRDKSVLVKKYTLERLAEIYNLYCLRCCD 475
Query: 418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
GS+N +EF+WIPGKILRC YDKDF SDTIESVLC +LFPT FS+KD+V+HWVR+FSGFD+
Sbjct: 476 GSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKHWVRVFSGFDK 535
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+E+KALEKILEQKQRLQQEMQRYLSL+QMHQDG+ PEIQKK+ +C R+MSR FA+PAKAE
Sbjct: 536 VEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMSRLFADPAKAE 595
Query: 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
ENF ILDQLKD N+WKIL +L+D TSF QA + RDDLL+ILG KHRLYDFL TLS+KCS
Sbjct: 596 ENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYDFLGTLSLKCS 655
Query: 598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE 657
YLLFNKEHVKE LLE A QKSS N Q++QSCM++L +LARFSPLLL G EE+LV+LLK++
Sbjct: 656 YLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDD 715
Query: 658 NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
NEIIKEG+LH+LAKAGGTIREQLA TSSSVDL+LERLCLEGSRRQAKYAVHALAAITKDD
Sbjct: 716 NEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAVHALAAITKDD 775
Query: 718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 777
GLKSLSVLYKRLVDML++KTHLPAVLQSLGCIAQTAMPVFETRESEIE FIK +IL+CS+
Sbjct: 776 GLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGFIKCEILKCSS 835
Query: 778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
I+GIKT+VKSYLPVKDAH+R GIDDLL ILK++L +GE+S
Sbjct: 836 --------------------IFGIKTMVKSYLPVKDAHLRLGIDDLLEILKNILLFGEIS 875
Query: 838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
+DIESS+VDKAHLRLA+AKA+LRL+R WDHKIPV VFHLTLRT E SFPQAKKLFLSKVH
Sbjct: 876 KDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLRTSESSFPQAKKLFLSKVH 935
Query: 898 QYVKDRLLDAKYACAFLFGITESKSPEFEE---NLADIIQMHHQMKARQISVQSDANSFA 954
QY+KDRLLDAKYACAF F I S+ EFEE NL DIIQM+HQ KARQ+S QSDA+S A
Sbjct: 936 QYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQAKARQLSTQSDASSLA 995
Query: 955 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--- 1011
YPE+I+PYLVH AHHSCPDIDECKDVKAFE +Y +L+ +SML+H DED K+EA
Sbjct: 996 -YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDEDTKAEAGADK 1054
Query: 1012 NKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSL 1071
KE IS IISIF+SIK SEDIVDAAKSKNSHA+CDLGLSI KRL + +D+ QG+ SS++L
Sbjct: 1055 EKEGISAIISIFQSIKLSEDIVDAAKSKNSHALCDLGLSIIKRLVQKQDDVQGLTSSITL 1114
Query: 1072 PSTLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHEVVGSEIARHEALDDLEK 1131
P LYK EKKEGDDS+ASE QTWLADE VLTHFESLKLET+ +V E ++B ++
Sbjct: 1115 PPILYKLCEKKEGDDSVASEGQTWLADEXVLTHFESLKLETNGMVDEE----GVINBNDR 1170
Query: 1132 DGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVREINLDNLGVLNK 1191
DGNE+PLGKMI++LKS+G K K K KKSSPA+ K ENDVDIL+MVREIN D +G+ +K
Sbjct: 1171 DGNELPLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREINFDAMGMSSK 1230
Query: 1192 FESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSFPVPKRRRSLSAHGGFRTPKSNSKAP 1251
FESSNGH++ ++ K+ ++E+ K+R++T+VT VPKRRRS SA P+S SK
Sbjct: 1231 FESSNGHEYSSHRKSKMGQKHEKKKRRRSTEVTPVTVPKRRRSSSAKSSL--PRSASKGS 1288
Query: 1252 LRASGGGSHHAGVSSFQSIDMDDDI-SESEVKISTKKKKFTSNESDSFASRFQGSRSFSS 1310
+RA H AGVSSFQS DMD ++ ++SE K+S K ESD S F+ + +F S
Sbjct: 1289 VRALRDNLHQAGVSSFQSTDMDSEVHTDSEDKVSALKNIGEPAESDLLVSCFRRNSNFLS 1348
Query: 1311 KRKGKSADLGHDNEADEVGEADEGDLKNSDMLS-----------KSPVGSAKKRKRRSIA 1359
KRKGK +D G ++EA VGE + DL+ ++ KSP GS KKRKRRSIA
Sbjct: 1349 KRKGKGSDKGDNDEARIVGEDXDHDLRKPNVPMETDKIHTASNVKSPTGSTKKRKRRSIA 1408
Query: 1360 GLAKCTTKNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 1419
GLAK T+K + DLI RIKVWWPMDKQFYEG +KSYDP +KHV+LYDD DVEVLR
Sbjct: 1409 GLAKSTSKEGRSHAADLIDCRIKVWWPMDKQFYEGXVKSYDPKARKHVVLYDDGDVEVLR 1468
Query: 1420 LDKERWELLDNGRKPTKKSKSNSLKHASLIQVSSGKKNKLSGGARQNKKSMKD-----KG 1474
L +ERWEL++N KP K K NS K VS+ +KNK G++QNKK +K +G
Sbjct: 1469 LARERWELVENVAKPAK--KLNSSKTPPSKGVSADQKNKFLNGSQQNKKPIKSSSSKVRG 1526
Query: 1475 KRTPKKSLKDRPKFA----SKSYFSEDEDSEKTDVSDPKPTTVSKVLETNSGDSQGKRAD 1530
KRTP+K+LK K + + F E E +DVS+P+P +SKV + NSGDS+ K +
Sbjct: 1527 KRTPRKNLKHVEKAGLESNTATEFCEVESRGSSDVSNPEPNAMSKVEDMNSGDSEEKLNE 1586
Query: 1531 MEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDESDEVDKMDSEEKPAEEVGSVPQD 1590
++ LT EESDKE K +SE + VED E + +ES++ +K SE +P E+ + QD
Sbjct: 1587 RSEKGLTGGEESDKEEKSVSEGKQVEDKEKRPSDTEESEKEEKPYSEGRPVEDKEGICQD 1646
Query: 1591 EK---------SDEEDKEEAESSKGSREEANEDGKSDSEGNEEINGDGSSPMNPEKSQNE 1641
+ S+E + EE++ S EEAN++ +SDSE + N + S+P + +KS +
Sbjct: 1647 AQESPEKKESYSEEREPEESKRDSPSGEEANKEEQSDSEETQAENLE-SNPTDXDKSSKK 1705
Query: 1642 LPKPVDADDAEISDDEPL 1659
P + +DA+ SDDEPL
Sbjct: 1706 TSDPSNTEDAKNSDDEPL 1723
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585406|ref|XP_002533398.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi|223526757|gb|EEF28984.1| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224139450|ref|XP_002323118.1| predicted protein [Populus trichocarpa] gi|222867748|gb|EEF04879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356522079|ref|XP_003529677.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356564452|ref|XP_003550468.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443672|ref|XP_004139601.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224089565|ref|XP_002308759.1| predicted protein [Populus trichocarpa] gi|222854735|gb|EEE92282.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356557993|ref|XP_003547294.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356532370|ref|XP_003534746.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|186530158|ref|NP_001119390.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi|332008170|gb|AED95553.1| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1675 | ||||||
| TAIR|locus:2169058 | 1607 | AT5G47690 [Arabidopsis thalian | 0.748 | 0.779 | 0.638 | 0.0 | |
| TAIR|locus:2116787 | 873 | AT4G31880 [Arabidopsis thalian | 0.136 | 0.262 | 0.463 | 1.3e-66 | |
| UNIPROTKB|F1N7G8 | 1449 | PDS5B "Uncharacterized protein | 0.330 | 0.382 | 0.268 | 8.1e-66 | |
| RGD|1307094 | 1333 | Pds5a "PDS5, regulator of cohe | 0.438 | 0.551 | 0.249 | 1e-65 | |
| UNIPROTKB|Q5F3U9 | 1412 | PDS5B "Sister chromatid cohesi | 0.330 | 0.392 | 0.270 | 2.3e-65 | |
| UNIPROTKB|F1P3B8 | 1446 | PDS5B "Sister chromatid cohesi | 0.330 | 0.383 | 0.270 | 3.5e-65 | |
| UNIPROTKB|Q29RF7 | 1337 | PDS5A "Sister chromatid cohesi | 0.438 | 0.549 | 0.249 | 4.5e-65 | |
| MGI|MGI:2140945 | 1446 | Pds5b "PDS5, regulator of cohe | 0.330 | 0.383 | 0.267 | 1.8e-64 | |
| UNIPROTKB|Q5U241 | 1464 | pds5b-b "Sister chromatid cohe | 0.330 | 0.378 | 0.263 | 2.8e-64 | |
| UNIPROTKB|F1Q0Z0 | 1447 | PDS5B "Uncharacterized protein | 0.330 | 0.382 | 0.268 | 3.7e-64 |
| TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4139 (1462.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 807/1264 (63%), Positives = 986/1264 (78%)
Query: 1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
M +K E+QLKE+GSKL+ P +KD L+KLLK+AA CLSEL QSPP ++L+++QPFL+A++
Sbjct: 1 MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60
Query: 61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
+P +L HQDKDVKLLVA+C+ EITRITAPEAPYSD+++KDIFQLIV F+GL D GPSF
Sbjct: 61 KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120
Query: 121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
GRRV+ILET+AKYRSCVVMLDLECD+LV E+++TF VA DDHPE V SSMQ IMIVLLE
Sbjct: 121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLE 180
Query: 181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
ESED+QE LL+ILLS LGRN++D ARRLAM VIE CA K+E+ IKQFL+SSMSGDSR
Sbjct: 181 ESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDSR 240
Query: 238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG+LF++PG
Sbjct: 241 FSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVGELFSLPGRVI 300
Query: 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
+E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++ALCDRLLD+DEN
Sbjct: 301 SEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISALCDRLLDYDEN 360
Query: 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
+RKQVVAVICDV+ AL SIPV+T+KLVAERLRDK++LVK YTMERL ++FR CLR +
Sbjct: 361 IRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTELFRVYCLRCAD 420
Query: 418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
G ++ +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+HW++IFSGFD+
Sbjct: 421 GKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKHWIQIFSGFDK 480
Query: 478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
+E KA EKILEQ+QR+QQEMQRYLS++Q Q DAPEIQKKILF FRVMSR+F++P K E
Sbjct: 481 VETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMSRAFSDPPKTE 540
Query: 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
+NFLILDQLKDAN+WKIL NLLD NTS QA RDD+LKIL KH LYDFLSTLS+KCS
Sbjct: 541 QNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYDFLSTLSIKCS 600
Query: 598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTXXXXXXXXXXX 657
YLLF+KE+VKEIL EV+ +KSS N +Q CMD LG+LA F P L G
Sbjct: 601 YLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAEEELISFLKDD 660
Query: 658 XXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
++KEG L +LAKAGGTIRE L +SSVDLLLER+C+EG+R+QAKYAVHALA+ITKDD
Sbjct: 661 DEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAVHALASITKDD 720
Query: 718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXXXXXXXLRCSN 777
GLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR L+ +
Sbjct: 721 GLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILKLKS 780
Query: 778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
+ +D K WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGILK++LS+GE+S
Sbjct: 781 ETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVS 840
Query: 838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
ED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP AKK+FL KVH
Sbjct: 841 EDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPTAKKIFLGKVH 900
Query: 898 QYVKDRLLDAKYACAFLFGITESKSPEFEE---NLADIIQMHHQMKARQISVQSDANSFA 954
QYVKDR+L+ KYAC+FLF IT S E EE NLADIIQ +Q K R+IS Q+DANS
Sbjct: 901 QYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKISAQTDANSVT 960
Query: 955 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKE 1014
YP +I+PYLVH AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+ED K+E +KE
Sbjct: 961 LYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEEDGKTEDIDKE 1020
Query: 1015 XXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLP 1072
K SED+ DA KSKNSHAIC+LGLSI L++ E + QG + VSLP
Sbjct: 1021 REYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITPVSLP 1080
Query: 1073 STLYKPYEKKEGDDSLASERQTWLADESVLTHFESLKLETHE--VVGSEIARHEALDDLE 1130
TLYKP EK EGD S E + WLADE+VL HF +LKLE+H V + + +E + D E
Sbjct: 1081 PTLYKPSEKVEGDKSQVGEEKLWLADETVLLHFRALKLESHADASVIPQTSENEVMIDGE 1140
Query: 1131 KDGNEVPLGKMIXXXXXXXXXXXXXXXXXXXXXEVKGTENDVDILQMVREINLDNLGVLN 1190
DGNE+PLGK++ E + +NDVD+L+MVREINLD+L +L+
Sbjct: 1141 SDGNEIPLGKIVERLRAQGTKTRKGKKNKSVPAEDENGKNDVDVLKMVREINLDHLQMLD 1200
Query: 1191 KFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTSF-PVPKRRRSLSAHGGFRTPKSNSK 1249
KFESSNGHKH PS++ ++ +++ KR D TS VPKRRRS S H ++ S K
Sbjct: 1201 KFESSNGHKHSPSERAEICQRDQKGNKRNVGDATSVVSVPKRRRSSSGHSPYKFSNSGPK 1260
Query: 1250 APLR 1253
L+
Sbjct: 1261 VQLK 1264
|
|
| TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2140945 Pds5b "PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5U241 pds5b-b "Sister chromatid cohesion protein PDS5 homolog B-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q0Z0 PDS5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1675 | |||
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-06 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 6e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 2e-05 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 9e-05 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 1e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 2e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 2e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-04 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 5e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 6e-04 | |
| PLN02976 | 1713 | PLN02976, PLN02976, amine oxidase | 6e-04 | |
| TIGR01651 | 600 | TIGR01651, CobT, cobaltochelatase, CobT subunit | 6e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 7e-04 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 9e-04 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.002 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 0.003 | |
| PLN02967 | 581 | PLN02967, PLN02967, kinase | 0.003 | |
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.004 |
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 3e-06
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 18/151 (11%)
Query: 1508 PKPTTVSKVLETNSGDSQGKRADMEDENLTDKEESDKEFKLISEERDVEDTEGNLNGEDE 1567
P P T SG A+ E+ +E + +E +
Sbjct: 46 PAPPA-----PTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSG----SG 96
Query: 1568 SDEVDKMDSEEKPAEEVGSVPQDEKSDEEDKEEAESSKGSREEANEDGKSDSEGNEEING 1627
S+ V + E + ++ E+ +S E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE--- 153
Query: 1628 DGSSPMNPEKSQNELPKPVDADDAEISDDEP 1658
+ S N+ P E S +EP
Sbjct: 154 ------SHNPSPNQQPSSFLQPSHEDSPEEP 178
|
Length = 413 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|215527 PLN02976, PLN02976, amine oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|215521 PLN02967, PLN02967, kinase | Back alignment and domain information |
|---|
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1675 | |||
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 100.0 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 99.73 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 98.95 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.66 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.56 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.21 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.95 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.94 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.81 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.53 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.5 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.42 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.31 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.31 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.17 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.02 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.01 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 97.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.85 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.81 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 96.75 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 96.69 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.66 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.6 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.47 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.4 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.37 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.36 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 96.25 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 96.09 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.08 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.0 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.0 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.89 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.71 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 95.61 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 95.57 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.17 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.09 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 94.77 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.69 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 94.45 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.42 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 94.4 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.33 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 94.28 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.21 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.2 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.69 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 93.44 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 93.44 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.42 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.07 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 93.02 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 92.99 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 92.99 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 92.43 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 92.37 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 91.84 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.27 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 90.92 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 90.72 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 90.65 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 90.6 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 90.21 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 90.08 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 90.03 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 89.53 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 89.44 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.2 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 89.16 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 88.82 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 88.8 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 88.78 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 88.54 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 87.59 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 87.56 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 87.41 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 87.19 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 86.96 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 85.22 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 84.98 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.14 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 84.0 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 83.94 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 82.89 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 81.82 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 81.75 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 81.53 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 81.19 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 80.4 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 80.18 |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-137 Score=1336.67 Aligned_cols=1066 Identities=30% Similarity=0.466 Sum_probs=900.8
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhchhhhhcCCCcchhHHHHHHHHHHhhhcCC
Q 000318 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1675)
Q Consensus 10 ~~~g~kL~~~~~s~~eLlkrLk~L~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1675)
..-|-+....|++++||++||++|+.||++++|++ .+++++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34455666678999999999999999999999996 6899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhheeccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000318 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1675)
Q Consensus 90 dAPytd~qLkdIF~l~v~qf~~L~d~~~p~f~q~~~LLE~LA~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~V~~ 169 (1675)
||||++.||+|||++|++||.||.|+.+|||.|||||||+||.||.|++|.|.+|++++.+||++||++++.+|+.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555555599999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchH
Q 000318 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1675)
Q Consensus 170 ~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~---~~a~~lA~~v~~~~~dkL~~~I~qyf~~il~~~~-~~~~~~~~~ 245 (1675)
|.+||+.+|.|.+.||.++|++||.+|+.++. ..|+.||..+|+.|++.+++.|++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCchHHHHHHHHHHHHhhcCCCCCchhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000318 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1675)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViPqLe~EL~sed~~~Rl~At~llG~mfs~~~s~~a~~y~~lw~~fL~R~~D~s~~VR~~~Ve 325 (1675)
|++|++||+++|++|++|||||++||+++++.+|+.||.++|+||+.+++.++.+|+++|.+||+||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHhhhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000318 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1675)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DEkVR~aaV~ai~~la~~~l~~Vs~elL~~laeR~RDKK~~VRkeAm~~La 405 (1675)
++++||.+||+...+..+..+++.|+.|++++||..||.++|+++.+.+..++. +|+.|+||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HhhhccCCCcchhccccchHHHhhhhccCCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000318 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1675)
Q Consensus 406 ~LY~~-~~~~~~~~~~~~~~~~wIP~~IL~~~Y~nd~~~-~lVE~vL~e~LlP~~~~~~~R~~~ll~l~~~LD~~~~kal 483 (1675)
++|+. ||..++++...+..|.|||++||++||.++.+. .+||++|+++|+|+++++++||++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 566667777888999999999999999998764 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000318 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1675)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kL~~~i~~Ls~~fPDp~Ka~e~L~kf~kl--nD~Ri~kLLk~~idp 561 (1675)
..|+++|.++|.+++.||.+++..+.++ ..+++...|..++..||||..+....++|++. .+..+..++..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765433 77788888999999999999999999999763 467888999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccCh-hHHHHHHHHHHhhcc-------cch--hhhHHH
Q 000318 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------SAN--AQFMQS 627 (1675)
Q Consensus 562 ~td~~t~~~a~kELlkkL~~----~~~~~d~l~~Ll~R~S~li~Nk-s~V~~LL~~v~~~~~-------~~~--~~~~~~ 627 (1675)
..+|.++.-.+++++.+++. +..+..+.+.|+.|..++.+.. +.+..++........ .++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 99998776556666666554 4457788888999999988887 777777765432211 111 122345
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchHhHHHHHHHhhcchhhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000318 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1675)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--v~~Li~lL~~~~~~~~~~aLkiLak~~k~~~e~~~~~~s~l~~~L~~lal~GtpkqAKy 705 (1675)
...||.++|..+|.+|... +..++..+....+...+.+|+.+...|.......+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 6789999999999999876 36666666666666778899999888854444455566778999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhccccccc-chHHHHHHHHHhhhcccCcc
Q 000318 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKI 779 (1675)
Q Consensus 706 Avr~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sLg~Iaq~aP~vfe~-~~~eI~~fIik~ILl~~~~~ 779 (1675)
|++|+.++...+.. .+.+++..+.+.+... .++.+.+.+||+|+.+.|..|.+ ....+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876422 2345666677766433 49999999999999999966554 57889999999998888887
Q ss_pred CCC-CCCCCCCc----hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCcCccCCCCChhhHhHhH
Q 000318 780 RND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1675)
Q Consensus 780 ~~~-~~~~W~d~----s~~~~aKi~aLK~Lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR 851 (1675)
++. ....|++. +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|++..+..+|..++++||
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 56778762 45688899999999999999976521 111112566777765 69999999999999999999
Q ss_pred HHHHHHHHHhhhc--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCh--hhHH
Q 000318 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSP--EFEE 927 (1675)
Q Consensus 852 LaAa~sLLKLAr~--~d~~i~~d~f~l~~ll~qD~~~~VR~~Fl~KL~k~L~~~~Lp~kY~~lf~laa~a~ep~--e~e~ 927 (1675)
+.|+.++||||.. +..++.+++|..+.+.++|++++||..|+.||++++....+|.-||+.|.+++.+.... ..+.
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~~~~~~ 957 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKELLANKR 957 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhhhhHHH
Confidence 9999999999986 57889999999888889999999999999999999999999999999988854331110 0011
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccCCchhhhHHHHhHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCcccc
Q 000318 928 NLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVK 1007 (1675)
Q Consensus 928 ~lk~~i~~~~~sr~r~~s~~s~a~~~~~~pEy~LprLIHLLAHH~~Pd~ee~~d~~~~~~~~~~L~F~L~~L~~~~~~~~ 1007 (1675)
....-...+++.+.....+.++. .....|||+.+|.+|++||| |+|...+++..|-.+..++||.++.|...+
T Consensus 958 ~~~t~~~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~---- 1030 (1266)
T KOG1525|consen 958 EEETKNSASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN---- 1030 (1266)
T ss_pred HhhhhcchhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh----
Confidence 11111111222222222222221 15688999999999999999 999998899999999999999999996432
Q ss_pred ccccccccH--HHHHHHHHHhhcccccccc---ccCcchHHHHHHHHHHHHHHhc-cCCCCcccccccCCCccccCCCCC
Q 000318 1008 SEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYEK 1081 (1675)
Q Consensus 1008 ~~~a~~eNi--SlLy~La~rIKq~rDa~d~---~~S~nlY~LcDLAq~IIk~~a~-k~w~lqsyPGkV~LPs~lF~p~~s 1081 (1675)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||++.||..+|.+..+
T Consensus 1031 ------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~~ 1104 (1266)
T KOG1525|consen 1031 ------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPKD 1104 (1266)
T ss_pred ------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcch
Confidence 333 3334445556677787643 3456799999999999998775 679999999999999999998764
Q ss_pred CCcccccccccccccccchh
Q 000318 1082 KEGDDSLASERQTWLADESV 1101 (1675)
Q Consensus 1082 ~~~~~a~~~~~k~yLpde~~ 1101 (1675)
.+ -+..++|+|+++-
T Consensus 1105 ----kn-~~~~k~~i~e~~~ 1119 (1266)
T KOG1525|consen 1105 ----KN-FINNKIYIPEETE 1119 (1266)
T ss_pred ----hh-hccccccCCchhc
Confidence 22 2468999999943
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 3e-17
Identities = 93/634 (14%), Positives = 200/634 (31%), Gaps = 133/634 (20%)
Query: 507 HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 563
H D + E Q K IL F E+ F+ + + + D
Sbjct: 6 HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41
Query: 564 SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 611
+ D ++ A TL K ++ ++ V+E+L +
Sbjct: 42 -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98
Query: 612 EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 667
+ ++ S + D L F+ + + + L++ ++ ++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 668 --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 703
+A L +S +L L++L +
Sbjct: 157 GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 704 KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 754
+ H+ + +++ L L Y+ LV ++ A +L C +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268
Query: 755 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 814
+ TR ++ +F+ + + + + D + LLK + LP +
Sbjct: 269 -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323
Query: 815 HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 861
P ++ ++ L+ +++ IESS ++ A R + +V
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 862 SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 921
IP + L S + ++K+H+Y L++ K I S
Sbjct: 384 ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI-PSI 431
Query: 922 SPEFEENLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECK 980
E + L + +H + I D++ P Y+ Y HH +I+ +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNIEHPE 488
Query: 981 DVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE----DI 1032
+ F +V+ F+ + H + S ++ + I + E I
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 1033 VDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 1066
+D + IC + R++ M ++ +F
Sbjct: 549 LDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1675 | ||||
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.003 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 9e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.003 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1675 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.63 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.47 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.43 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.31 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.11 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.1 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.81 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.68 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.44 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.41 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.19 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.59 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.47 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.16 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.96 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.72 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.67 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 96.52 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.45 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 96.04 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 95.36 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 95.32 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 94.81 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 93.02 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 90.84 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 90.56 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 90.31 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 87.73 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 86.69 | |
| d1wgsa_ | 133 | Probable histone acetyltransferase MYST1 {Mouse (M | 86.25 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 86.1 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 85.51 | |
| d2g3ra1 | 53 | p53-binding protein 1, 53BP1 {Human (Homo sapiens) | 82.02 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.9e-10 Score=86.69 Aligned_cols=367 Identities=13% Similarity=0.145 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999864179994414884899999841132214888220687888887786412999999915899999999982
Q 000318 29 LLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGT 108 (1675)
Q Consensus 29 rL~~l~~~Ls~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~qLkdIF~l~v~q 108 (1675)
|...+.+.+..+.++....+.+....+...|+. +|.-++.+||..+..||..+..-. ...++..+...++..
T Consensus 20 R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~------~~~~~~~l~~~L~~~ 91 (1207)
T d1u6gc_ 20 RFMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV------KEYQVETIVDTLCTN 91 (1207)
T ss_dssp HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_conf 999999999987230144576889999999999--967998799999999999999767------686699999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-HHHHHHEECCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16998889987146999999997-431420001698-3189999999999732499825199999999999960244554
Q 000318 109 FSGLKDTGGPSFGRRVVILETLA-KYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQ 186 (1675)
Q Consensus 109 l~~L~d~~~p~f~q~~~LLe~LA-~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~V~~~m~~IL~~iI~Ese~ip 186 (1675)
+. +.+...-.-....|.++- +.-.. ...-. ...++..+...+.+.........+.....+++..++.-....-
T Consensus 92 l~---~~~~~~r~~~~~~L~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l 166 (1207)
T d1u6gc_ 92 ML---SDKEQLRDISSIGLKTVIGELPPA--SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL 166 (1207)
T ss_dssp TT---CSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HC---CCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56---896326599999999999966320--0231127889999999998763477778999999999999998756766
Q ss_pred ----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf ----889999999713798578999999999995454-----47999999998305999998873037799999984064
Q 000318 187 ----EDLLVILLSALGRNKNDTARRLAMNVIEQCAGK-----LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP 257 (1675)
Q Consensus 187 ----~~vLd~IL~~l~~~~~~~a~~lA~~ii~~~~dk-----L~~~I~qyf~~il~~d~~~~~~~~~~h~Li~eL~~~~P 257 (1675)
..++..++..+.... ..-+.-|...+...+.. +...+...+..+.... .......+-.++-.|.+..|
T Consensus 167 ~~~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~l~~l~~~~~ 243 (1207)
T d1u6gc_ 167 VNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND--SMSTTRTYIQCIAAISRQAG 243 (1207)
T ss_dssp TTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC--SSCSCTTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCC
T ss_conf 8779999999998808999-89999999999999987799879999999999870599--88999999999999998761
Q ss_pred HHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHH-----------------------
Q ss_conf 034----31122120133677568999999999986159999821004999999982-----------------------
Q 000318 258 QIL----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK----------------------- 310 (1675)
Q Consensus 258 ~lL----~~ViPqLe~EL~sdd~~~Rl~At~llG~mfs~~~s~~a~~y~~~w~~fL~----------------------- 310 (1675)
..+ ..++|.+..-+..++.++|..|...+..+...-+..+...++.++...+.
T Consensus 244 ~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~ 323 (1207)
T d1u6gc_ 244 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 323 (1207)
T ss_dssp GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 54677799999999988258617778999999999998674654455999999999987407300034678877655540
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf --------------0069992299999999588782199999--867899999866079536899999999999643205
Q 000318 311 --------------RLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 374 (1675)
Q Consensus 311 --------------R~~Dks~~VR~~~V~~~~~iL~~~p~~~--~~~ei~~~L~~rL~D~DEkVR~aaVkai~~la~~~l 374 (1675)
-..|.+..||...+++...++.+.|... ...++.+.|..++.|.++.||.+++.++..+.....
T Consensus 324 ~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 324 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 11013566788875220133899999999998689888999999999999999998459854899999999999997303
Q ss_pred CCC----------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 888----------------------9888999997603689369999999999999987
Q 000318 375 NSI----------------------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1675)
Q Consensus 375 ~~V----------------------~~elL~~laeR~RDKK~~VRkeAi~~La~LY~~~ 411 (1675)
... -..++..+...++++...+|..++..+..+....
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~ 462 (1207)
T d1u6gc_ 404 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 462 (1207)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 21255515488876302699999876999999999864886567888999999999972
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
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| >d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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