Citrus Sinensis ID: 000324
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1665 | 2.2.26 [Sep-21-2011] | |||||||
| O75643 | 2136 | U5 small nuclear ribonucl | yes | no | 0.974 | 0.759 | 0.576 | 0.0 | |
| Q9VUV9 | 2142 | Putative U5 small nuclear | yes | no | 0.976 | 0.759 | 0.572 | 0.0 | |
| Q9U2G0 | 2145 | Putative U5 small nuclear | yes | no | 0.974 | 0.756 | 0.515 | 0.0 | |
| Q55CI8 | 2237 | Activating signal cointeg | yes | no | 0.977 | 0.727 | 0.485 | 0.0 | |
| Q9UT24 | 2176 | Pre-mRNA-splicing factor | yes | no | 0.965 | 0.738 | 0.483 | 0.0 | |
| F1NTD6 | 2211 | Activating signal cointeg | yes | no | 0.814 | 0.613 | 0.462 | 0.0 | |
| E1BNG3 | 2201 | Activating signal cointeg | no | no | 0.814 | 0.616 | 0.459 | 0.0 | |
| Q8N3C0 | 2202 | Activating signal cointeg | no | no | 0.813 | 0.615 | 0.453 | 0.0 | |
| E9PZJ8 | 2198 | Activating signal cointeg | no | no | 0.808 | 0.612 | 0.452 | 0.0 | |
| F1LPQ2 | 2197 | Activating signal cointeg | no | no | 0.735 | 0.557 | 0.485 | 0.0 |
| >sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1911 bits (4951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 965/1674 (57%), Positives = 1246/1674 (74%), Gaps = 52/1674 (3%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PELEEKLKKSAKKKKERDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
+++E+ + +K+ E D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 -QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEE----DEEEEEDV 230
DY GD + N +++D+ GV V+FE ++++ +E V+EE D E +E V
Sbjct: 181 DY--GGD---KEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAV 235
Query: 231 AEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
S + G + +++ L+ +DIDA+WLQR++S+ +D I QK
Sbjct: 236 VRCTLSANLVASGELM-------SSKKKDLHPRDIDAFWLQRQLSRFYDDAI---VSQKK 285
Query: 291 AEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKK 349
A+EVL+IL DDRE EN+L+ L F+ F IK L ++R+ +++CT LA AQ + E+++
Sbjct: 286 ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKER 345
Query: 350 IEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLV 409
I +M P+L+ L QLH T E IREE R + S D +
Sbjct: 346 IMGKMEA-DPELSKFLYQLHETEK---------EDLIREERSRRERVRQSRMDTDLETM- 394
Query: 410 DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKP 469
D D G L RQ+LDL+ L F QG FMAN++C LP+GS R KGYEE+HVPA+K KP
Sbjct: 395 DLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKP 454
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
E+L+ + ++P++AQ F+G LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA+
Sbjct: 455 FGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 514
Query: 530 LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
+ +L+++ + N DG+ N ++KI+Y+APM++LV E+VG+ RL Y + V EL+GD
Sbjct: 515 MCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQ 574
Query: 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
L +++I TQIIV TPEKWDIITRK G+RTYTQLV+L+I+DEIHLLHD+RGPVLE++VAR
Sbjct: 575 LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 634
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+R IE T+E +RL+GLSATLPNYEDVA FLRV+ KGLFYFDNS+RPVPL Q Y+GI
Sbjct: 635 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE 694
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
KK ++RFQ+MN++ YEK++ AGK+QVL+FVHSRKET KTARAIRD LE DTLG FL+E
Sbjct: 695 KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 754
Query: 770 DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
S S E+L++ + K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTAT
Sbjct: 755 GSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 814
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
LAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD+ GEGI+IT H
Sbjct: 815 LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 874
Query: 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P
Sbjct: 875 ELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPT 934
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
LYG++ + LK D L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI+
Sbjct: 935 LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 994
Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEE 1069
+ T+ TYN+ LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EE
Sbjct: 995 NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEE 1054
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNL 1129
PSAKINVLLQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL
Sbjct: 1055 PSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNL 1114
Query: 1130 SKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTL 1189
KM+ KRMW PLRQF +P E++ K+EKK+F +ER YDL+ E+GELIR PKMG+T+
Sbjct: 1115 CKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTI 1174
Query: 1190 HKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYIL 1249
HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG E FW++VED D E IL
Sbjct: 1175 HKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVIL 1234
Query: 1250 HHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK 1309
HHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL +T LPVSFRHLILPEK
Sbjct: 1235 HHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294
Query: 1310 YPPPTELLDLQPLPVTALRNPLYEALYQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368
YPPPTELLDLQPLPV+ALRN +E+LYQ F FNPIQTQVF +YN+DDNV V APTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354
Query: 1369 GKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428
GKTIC+EFAILR ++SE R VYI P+EALA++ Y DW KF L +VV LTGE
Sbjct: 1355 GKTICAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1411
Query: 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488
T+ DLKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI
Sbjct: 1412 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1471
Query: 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548
SRMRYI+SQ+E IRIVALS+SL+NAKD+ W+G ++ FNF P VRPVPLE+HIQG +
Sbjct: 1472 SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFN 1531
Query: 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
I++ + R+ +M KP + AI +H+ +KP +VFVPSRK RLTA+D++T + D Q+ F
Sbjct: 1532 ISHTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRF 1589
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
L +++ P+++ + + LK TL +GVGYLHEGL+ ++ +V LF +G I++
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQV 1643
|
Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 1909 bits (4945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1671 (57%), Positives = 1236/1671 (73%), Gaps = 45/1671 (2%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
A+A AR QYEY+ANS+LVL D RPR E TGE SL GK+D GDR R +
Sbjct: 2 ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 65 PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
P + EE K+K+ + + + D + A SEG Y+PKT+ETR YE +LS I
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL + + F LV++GK IT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
D+ A A N E +D+ G+ V+FEE+ EEESD DM E +++ +D E
Sbjct: 181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ +++ + + + SL+ DIDAYWLQR +S+ + D Q A +V
Sbjct: 238 RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
LKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA AQ ER++I E+
Sbjct: 295 LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M G LA IL QL ++ +E EAR S G+ A
Sbjct: 355 MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+HVPA+K P D N
Sbjct: 399 AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
E+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459 EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V EL+GD LTR+
Sbjct: 519 REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
QI TQ+IV TPEKWDIITRK G+RT+ LV+L+IIDEIHLLHD RGPVLE++VART+R
Sbjct: 579 QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L QQYIG+ KK L
Sbjct: 639 IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE DTLG FLKE S S
Sbjct: 699 KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759 MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819 VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879 YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
+ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939 SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999 LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
+RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSFRHLILPEK PP
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPP 1298
Query: 1314 TELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTI 1372
TELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV V APTGSGK
Sbjct: 1299 TELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMT 1358
Query: 1373 CSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432
+EFAI+R S+ R VY+ EALA + DW KFG L ++VV+LTGET D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFG-SLDIKVVKLTGETGTD 1414
Query: 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ SRMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
YI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PLE+HIQG ++T+
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534
Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++ D Q + F
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592
Query: 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G +++
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVA 1643
|
Putative RNA helicase involved in the second step of RNA splicing. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1729 bits (4478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1675 (51%), Positives = 1174/1675 (70%), Gaps = 53/1675 (3%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PP-----ELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG 119
P + +K ++ R+ D G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELM-GAYKPRTQETKQTYEVILSFILDALG 120
Query: 120 GQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA 179
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 121 DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFS-- 178
Query: 180 GDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDV-----AEPN 234
+ G D+ ++ GV V+F D DEEE D MV E + EE+ + +
Sbjct: 179 --IEEENKPEGDGDIYENEGVNVQF---DSDEEEDDGGMVNEIKGDSEEESEEEEGVDTD 233
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ ++ G + +D++ G+ L+ +DIDA+W+QR +++ F DP Q+ EV
Sbjct: 234 YTATLKGDGHLTEDEQKA---RGI-LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEV 286
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L R +++ER +IE++
Sbjct: 287 IGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCT-LLRQANEKERLQIEDD 345
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M P+L IL L T + + +EKS R+ + K +A++ + +
Sbjct: 346 MRS-RPELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAAN---------EAIS 392
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G W R++LDL+ L F QG M+N++C+LP+GS R K YEEIHVPA+K +P
Sbjct: 393 AGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEG 452
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+L
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
Q++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V E++GD ++++
Sbjct: 513 QEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
Q TQ+IV TPEK+D++TRK G+R Y Q+V+LLIIDEIHLLHD+RGPVLESIV RT+RQ
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQ 632
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL QQYIG+ KK L
Sbjct: 633 MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE DTL F++E S S
Sbjct: 692 KRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSAS 751
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+QVL STATLAWG
Sbjct: 752 TEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWG 811
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GEGI+IT HSEL+Y
Sbjct: 812 VNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQY 871
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L++RML+NP LYG+
Sbjct: 872 YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGRIAS++Y ++ ++
Sbjct: 932 THEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESM 991
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PIP+KE+L+E SAK
Sbjct: 992 QTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAK 1051
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA LA+K L L KMV
Sbjct: 1052 TNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMV 1111
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
T+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+ PKMG+ L KF+
Sbjct: 1112 TQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFI 1171
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +ED DGE ILHHE+
Sbjct: 1172 RQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEF 1231
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SFRHLILPEKYPPP
Sbjct: 1232 FLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPP 1291
Query: 1314 TELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT 1371
TELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++NV+V AP GSGKT
Sbjct: 1292 TELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKT 1351
Query: 1372 ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431
+E A+LR+ + E +AVYI P+E +A + Y DW+ + +G +V LTGE M
Sbjct: 1352 AIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM 1408
Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491
DLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ SR
Sbjct: 1409 DLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
Query: 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551
RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVPL++ I+ ++++
Sbjct: 1469 RYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSH 1528
Query: 1552 FEARMQAMTKPTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609
+R AM +P + AI +HA KPALVFVP R+ R AV L+T + DG K
Sbjct: 1529 NASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLR 1588
Query: 1610 LWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE+ I++C
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVC 1643
|
Putative RNA helicase involved in the second step of RNA splicing. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1633 bits (4229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1741 (48%), Positives = 1177/1741 (67%), Gaps = 113/1741 (6%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPEL 68
+E AR KQY Y+ NS+LV ++ + EP GEPE+LWG++ GDR +P EL
Sbjct: 2 SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60
Query: 69 EEKLKK---------------------SAKKKKERDP------------------DADAA 89
EK++ + KK K ++P D
Sbjct: 61 LEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDIL 120
Query: 90 AASE---GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
+A+E G Y+PKTKETR YE +L+ IQ+ +G QP +V GA DEIL++LK+D ++ P+
Sbjct: 121 SATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPE 180
Query: 147 KKKEIEKLLNPIPNHVFDQLVSIGKLITDYQD---AGDAAGNDAANGGEDLDDDMGVAVE 203
KK EI KLL + + F +L +GK ITD++D A + LDD+ GVAV
Sbjct: 181 KKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVI 240
Query: 204 FEENDDDEEESDLDM----------------------VQEEDEEEEEDVAEPNASGAMQM 241
+E +++E SD ++ + +D E + N Q
Sbjct: 241 IDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQK 300
Query: 242 ----------GGGIDDDDESGDANEGMSL-NVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
D + D N L + +ID++W+QRKIS+ F++ D ++L
Sbjct: 301 IKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISE-FER--DHDLSKQL 357
Query: 291 AEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
AE+ L IL + + R E +L+ DK +K ++ N+ +++CT LA+A++ +ERKKI
Sbjct: 358 AEKTLNILRQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKI 417
Query: 351 EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
E+EM P +IL++L TA +K +EK+ E+ + KD + ++ +
Sbjct: 418 EDEMSS-NPVTLSILNRLKGNEVTAATTEKTIEKT---ESNK-KDVEMKQQQQQQQDEIK 472
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
+ ++LL+L+ L+FQQG M N++ P+GS+R KG+EEIHVPA + P
Sbjct: 473 K--------PKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPF 524
Query: 471 DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
+PNE+LI I E+PEW++ F+ G+ LNRVQS+++ A + +N+LL APT +GKTNVA
Sbjct: 525 NPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVA 584
Query: 529 VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
+LTIL ++ NR+ D G +KIVY+APMK+LV E+VGN S RL+ Y + V EL+GD
Sbjct: 585 MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGD 644
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
Q+LT +QI ETQIIVTTPEKWDIITRKSGDR YTQLVKL+IIDEIHLLHD RGPVLE IV
Sbjct: 645 QSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIV 704
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+R IE+T++ +RLVGLSATLPNYEDVA FLRV + G+FYFD+SYRP+PL QQYIGI
Sbjct: 705 ARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGI 763
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ +++ Q ND+ + KV G HQ+LIFVHSR+ETAKT + +RD A+E+ ++ R++
Sbjct: 764 S-DRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822
Query: 768 KEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
+ D SREIL+ + + +++ +LKDLLPYG IHHAG++R DR LVEDLFGD +QVL+S
Sbjct: 823 R-DPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIS 881
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D GEGIIIT
Sbjct: 882 TATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
EL++YLSL+N QL IESQF+S++AD LNAEIVLG++Q ++A NW+GYTYLYI M+R
Sbjct: 941 SQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIR 1000
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LY ++ + ++D L +RR DLVH+AATIL++N+L+KYDRKSG Q T+LG++AS+Y
Sbjct: 1001 NPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHY 1060
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI++ ++S Y EHLKP+M DIEL R+FSLS EFK V VR+ EK EL KLL+RVPIP+KE+
Sbjct: 1061 YITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKEN 1120
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+EEPS+KINVLLQ YIS LKL+G +L DM +I QSA R+ RALFEIVLK+GWAQLA+K
Sbjct: 1121 IEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKI 1180
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNL+KM+ +MWS Q+PLRQF+ I ++L +LE++ E Y+ + Q+LG I+ P G
Sbjct: 1181 LNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEG 1240
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
+ L +H FPKL L AHVQPI +L+VEL+ITPDF +D++ H +W+IVED DGE
Sbjct: 1241 KQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGE 1300
Query: 1247 YILHHEYFMLKKQYIE-EDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
IL+ EYF LKK+ + ED ++FTVP+ +PLPPQY++RV+SD W+G++ LP+SF+HLI
Sbjct: 1301 RILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLI 1360
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAA 1364
LPEKYPP LLDLQPLP+ L++P E++++ F FN IQTQVF +Y ++DN ++A
Sbjct: 1361 LPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISA 1420
Query: 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG--QGLGMRV 1422
PT SGKT+C+E A++R ++ + V VY+AP++ LA R +DW KFG G+ V
Sbjct: 1421 PTNSGKTVCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477
Query: 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482
+LTG+ D K+L++ II++ EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ GP
Sbjct: 1478 SDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGP 1537
Query: 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI 1542
+E++VSRMRYI++Q N +R++ALS+S+ANA+DL WIGAT +NF P VRP+P+E
Sbjct: 1538 TMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEY 1597
Query: 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM-TYSSMD 1601
IQG + +F ARM AMTKPT + ++ KN++ ++VFVP+RK R A D++ SS +
Sbjct: 1598 QIQGFEFPHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSFE 1655
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
+L+ + P+++++ LK +L+ GV + H+GL + ++ VV LF +G I+
Sbjct: 1656 DTLTKPYLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIR 1715
Query: 1662 I 1662
+
Sbjct: 1716 V 1716
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1581 bits (4093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1688 (48%), Positives = 1120/1688 (66%), Gaps = 80/1688 (4%)
Query: 17 QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKK 74
QY Y A S+LV D R R EPTGEPESL ++ G RA +P L +L +
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQ 88
Query: 75 SAKKKKERDPDADAAAASEGT-----------------------YQPKTKETRAAYEAML 111
++ R P DA + G Y P T ETR Y+ +L
Sbjct: 89 EVQEV--RLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYIL 146
Query: 112 SVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQLVSIG 170
S IQQ LG Q I+ AAD I+ +LK+ ++ +KK+IE++L+ +P F QLV++G
Sbjct: 147 SFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLG 206
Query: 171 KLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQE--------- 221
+TDY + N+ ++ GV V F E D++EE + E
Sbjct: 207 NRLTDYTVEQEEELNEEGV------NESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVL 260
Query: 222 ----EDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQA 277
EEE++++ P+ ++ E +++ ++IDA+WLQR+I++
Sbjct: 261 ETSISQEEEKKNIENPDTEVTFISA-------DTKKVTEIPTVHPREIDAFWLQREIAKY 313
Query: 278 FDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT 336
F D CQ+ + + L A+ D E+EN+L+ ++ F L++ L +NR +V CT
Sbjct: 314 F---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCT 370
Query: 337 RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKN-LEKSIREEARRLKD 395
L RA EER +EE++ G + IL+ L T + N L ++ E+A
Sbjct: 371 MLKRAATDEERLGVEEQIRAAG--RSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPV 428
Query: 396 ESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNK 455
+ + + + +DL+ F +G M+N+ LPEGS R T K
Sbjct: 429 SEIP---------LSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
GYEEIHVPA L +E+L+KI E+PEW+ AF LNR+QS +Y A + +NIL
Sbjct: 480 GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENIL 539
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
LCAPTGAGKTNVA+L IL +L + +D SFN N+KIVY+AP+KALV E+V N S RL
Sbjct: 540 LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
Y+++V EL+GD LT+QQI ETQIIVTTPEKWDIITRK+ D +Y LV+L+IIDE+HLL
Sbjct: 600 PYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLL 659
Query: 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
HD RGPVLESIVAR R E T E +RLVGLSATLPNY DVA FL V+ +KGLFYFD++Y
Sbjct: 660 HDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTY 719
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
RP PL Q++IGI K P +R Q N+ CYEKV+ AGK+QVLIFVHSRKETAKTAR IRD
Sbjct: 720 RPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRD 779
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
ALE +T+G L+ D+ SREIL++ D +LKDLLPYGFAIHHAGM R DRQ EDL
Sbjct: 780 KALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDL 839
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ
Sbjct: 840 FADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQ 899
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGTV++ ++ +W+
Sbjct: 900 FDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
GYTYLY+RMLR+PALY + PE +D L ++RADL+H+AA +L++ L+ Y+R+SG
Sbjct: 960 GYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLT 1018
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
T+LG++A+ YY++H +++ YN L T IEL R+FS S+EFK++ VR++EK+ELAKL
Sbjct: 1019 ATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKL 1078
Query: 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
L+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DMV++TQSAGR++RA+FEI L
Sbjct: 1079 LERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL 1138
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQE 1175
+RGW+ +A +L+ KM+ KR+W +PLRQF P+E++ ++EKK+F W+RY+DL P E
Sbjct: 1139 RRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE 1198
Query: 1176 LGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP 1235
LGEL+ PK GR ++ V FP+L + AHVQPITR++++VEL I F WDD + G E
Sbjct: 1199 LGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEA 1258
Query: 1236 FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295
FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EPLPP YFI++VSD+WL S T
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSIT 1318
Query: 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYN 1355
+P+SF+ LI+PEK+P PT LLDLQ PV++L NP + +LY FK FN IQTQVF +Y
Sbjct: 1319 KVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYK 1378
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+D+V + AP GSGKT+C+E A+L +H + G AVYIAP++ + RY +W KF
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFS 1435
Query: 1416 Q-GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G G +V+LTGE + DLKL++ +I TP +WD+LS+RW+ + +Q+V +I DEL
Sbjct: 1436 DLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQ 1495
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG 1534
L+GG GP+ E+++SR+RY+A Q+E IR+V LS S+ANA+DLGEW+G + +FNF P
Sbjct: 1496 LLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPK 1555
Query: 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594
RP PL IH+Q IT+F + M AM+KP + ++ K +VF P RK + A DL
Sbjct: 1556 DRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDL 1615
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
+T+S D D+ L+ E E F + +++ L+ +L+HG+ Y+ E + DQ +V L
Sbjct: 1616 VTFSMADEDE----YLFSLMENEAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYL 1670
Query: 1655 FEAGKIKI 1662
+ G IK+
Sbjct: 1671 YRHGLIKV 1678
|
Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures (By similarity). Required for pre-spliceosome formation, which is the first step of pre-mRNA splicing. This protein is associated with snRNP U5. Has a role in branch site-3' splice site selection. Associates with the branch site-3' splice 3'-exon region. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1256 bits (3249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/1405 (46%), Positives = 921/1405 (65%), Gaps = 49/1405 (3%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
E+L GD E++N+L L + F LI+ LL+NR +V R Q+ + + ++E
Sbjct: 261 EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316
Query: 353 EMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE----ARRLKDESASDGGRDRRGL 408
+ + A T E++K L K R E ARR K ++ DG GL
Sbjct: 317 QCKKFIGENAKPNYGCQVT--IQSEQEKLLMKQYRREEKRNARREK-QAGEDGEVSGEGL 373
Query: 409 VDRDA---------------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKC 443
+ D LG+++ +DL+ + + + F+ K
Sbjct: 374 LCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGGAKV 433
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPE QR NK YEE+ +P + P+ EK++ I ++ E Q AFKGM +LNR+QS V
Sbjct: 434 FLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIV 493
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G +KIVYVAPMKAL
Sbjct: 494 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYVAPMKALA 552
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 553 AEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 612
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
LVKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 613 LVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLFYFD+ +RPVPL Q +IGI+ +Q+ M+++CYE V+ + HQV++FVH
Sbjct: 673 NPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVH 732
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA A+R+ A N + FL + ++ L++L P GF+IHH
Sbjct: 733 ARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHH 792
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L
Sbjct: 793 AGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGI 852
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD LNAEI
Sbjct: 853 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIA 912
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D L + R LV LD+
Sbjct: 913 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDK 972
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++G+F TDLGR AS+YYI + TI T+NE + ++ + S +EEF+
Sbjct: 973 ARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQ 1032
Query: 1042 VTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL D +P +E KIN+LLQ YIS+ +L+ SL SD ++
Sbjct: 1033 IKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVA 1092
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P +L KLE+
Sbjct: 1093 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE 1152
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ K+G + + VHQ P + + A +QPITRTVL+V L IT
Sbjct: 1153 KNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNIT 1212
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+++K+ + +E L FT+PI+EPL
Sbjct: 1213 PDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPL 1272
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL +P YE LY+
Sbjct: 1273 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYK 1332
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNPIQTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1333 -FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1388
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +VVELTG+ D++ + + +I++TPEKWD +SR W+
Sbjct: 1389 PLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQ 1448
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQ+VS+ IIDE+HL+G + GPVLEVIVSR +I+S E +R+V LST+LANA+DL
Sbjct: 1449 NRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDL 1508
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM M KP F AI H+ KP
Sbjct: 1509 ADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSP-AKPV 1567
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLT++DL+ + + + D K +L E+ I +++ LK TL G+G
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WLKMDEREMNDIIGTVRDSNLKLTLAFGIG 1626
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
H GL++ D++ V LF KI++
Sbjct: 1627 MHHAGLHERDRKTVEELFVNCKIQV 1651
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkhb3, enabling alkhb3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/1404 (45%), Positives = 921/1404 (65%), Gaps = 48/1404 (3%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + G GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGLL 365
Query: 410 DRDADGGWLGQRQLL---------------DLDTLAF----------QQGGLFMANRKCD 444
D + + Q L D++ + + + F+A K
Sbjct: 366 CFDPKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSAFIAGAKMI 425
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+
Sbjct: 426 LPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVF 485
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL A
Sbjct: 486 ETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALAA 544
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQL 623
E+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+
Sbjct: 545 EMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQI 604
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN
Sbjct: 605 VKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 664
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHS 742
GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+
Sbjct: 665 PCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHA 724
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
R T +TA ++ + A N + FL + ++ +++L P GF+IHHA
Sbjct: 725 RNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHA 784
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862
GM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L L
Sbjct: 785 GMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGIL 844
Query: 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
D+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI L
Sbjct: 845 DVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIAL 904
Query: 923 GTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982
GTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV LD+
Sbjct: 905 GTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDKA 964
Query: 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYV 1042
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF +
Sbjct: 965 RMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQI 1024
Query: 1043 TVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQ 1101
VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++ Q
Sbjct: 1025 KVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQ 1084
Query: 1102 SAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKK 1161
+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K
Sbjct: 1085 NAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEEK 1144
Query: 1162 DFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITP 1221
+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL+V L+I+P
Sbjct: 1145 NLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSISP 1204
Query: 1222 DFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLP 1278
DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP
Sbjct: 1205 DFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPLP 1264
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL YEALY
Sbjct: 1265 SQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALY-N 1323
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIAP
Sbjct: 1324 FSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAP 1380
Query: 1399 LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458
L+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1381 LKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQN 1440
Query: 1459 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG 1518
R YV+QV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1441 RNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1500
Query: 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KPTF AI H+ KP L
Sbjct: 1501 DWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSP-AKPVL 1559
Query: 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638
+FV SR+ RLTA++L+ + + + D K +L E+E I I++ LK TL G+G
Sbjct: 1560 IFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIGTIRDSNLKLTLAFGIGM 1618
Query: 1639 LHEGLNKTDQEVVSALFEAGKIKI 1662
H GL++ D++ V LF KI++
Sbjct: 1619 HHAGLHERDRKTVEELFVNCKIQV 1642
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1229 bits (3181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1405 (45%), Positives = 913/1405 (64%), Gaps = 50/1405 (3%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L + LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASIKSGD--ELQDELFELLGPEGLELIEKLLQNRITIV--DRFLNSSNDHRFQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGLM 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RDAD + + D A + F+A K
Sbjct: 366 CFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + PL EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+V+LLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A + F + + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 AQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K ++ D+ E+G ++ +G + + VHQ P +++ A +QPITRTVL+V L+I
Sbjct: 1144 KKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIY 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 ADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP
Sbjct: 1500 ADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I +++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIATVRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
H GL++ D++ V LF K+++
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKVQV 1642
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1224 bits (3167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/1393 (45%), Positives = 915/1393 (65%), Gaps = 47/1393 (3%)
Query: 305 EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI 364
E++++L L + LI+ LL+NR+ +V R + + + +++ + L
Sbjct: 263 ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQDSCKKI---LGEN 317
Query: 365 LDQLHATRATAK-ERQKNLEKSIREEARRL---KDESASDGGRDRRGLVDRDA------- 413
+ + T + E++K L K R E +R+ + ++ DG G++ D
Sbjct: 318 SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377
Query: 414 --------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKCDLPEGSQRFTNK 455
+ LG+++ ++ + + + ++ F+A K LPEG QR K
Sbjct: 378 EHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTK 437
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+++A ++ +N+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
+CAPTGAGKTN+A+LTIL ++ + + G + +KIVYVAPMKAL AE+ S RL+
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYVAPMKALAAEMTNYFSKRLE 556
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHL 634
+ V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+VKLLI+DE+HL
Sbjct: 557 PLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHL 616
Query: 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
LH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN GLFYFD
Sbjct: 617 LHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGR 676
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753
+RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+R T +TA ++
Sbjct: 677 FRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
+ A + + FL + ++ +++L GF+IHHAGM R DR LVE
Sbjct: 737 IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVE 796
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L LD+MQ+ GRAGR
Sbjct: 797 NLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGR 856
Query: 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
PQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI LGTV N +EA
Sbjct: 857 PQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVR 916
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ YTYLY+RM NP YG++ + + D TL + R L+ LD+ +++++ ++GY
Sbjct: 917 WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGY 976
Query: 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA 1053
F TDLGR AS++YI + TI T+NE + ++ + S +EEF + VR++E EL
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELD 1036
Query: 1054 KLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
LL+ + +E KIN+LLQ YIS+ +++ SL SD ++ Q+A R++RALFE
Sbjct: 1037 ALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFE 1096
Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
I L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K+ ++ D+
Sbjct: 1097 IALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMR 1156
Query: 1173 PQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGY 1232
E+G ++ +G + + VHQ P + + A +QPITRTVL+V L I PDF W+D+VHG
Sbjct: 1157 KDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGT 1216
Query: 1233 V-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP QY+IR VSD+
Sbjct: 1217 VGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDR 1276
Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY F HFNP+QTQ+
Sbjct: 1277 WLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NFSHFNPVQTQI 1335
Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIAPL+AL +ER D
Sbjct: 1336 FHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDD 1392
Query: 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
W+I+ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+ R YVQQV++ I
Sbjct: 1393 WKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILI 1452
Query: 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLF 1529
IDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL +W+ GLF
Sbjct: 1453 IDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512
Query: 1530 NFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589
NF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP L+FV SR+ RL
Sbjct: 1513 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRL 1571
Query: 1590 TAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649
TA++L+ + + + D K +L +E++ I +++ LK TL G+G H GL++ D++
Sbjct: 1572 TALELIAFLATEEDPKQ-WLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRK 1630
Query: 1650 VVSALFEAGKIKI 1662
V LF K+++
Sbjct: 1631 TVEELFVNCKVQV 1643
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1239 (48%), Positives = 845/1239 (68%), Gaps = 14/1239 (1%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
A ++ F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q A
Sbjct: 412 AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++ + + G +
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
+KIVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD
Sbjct: 531 EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590
Query: 610 IITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++TRKS GD +Q+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSA
Sbjct: 591 VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
TLPNY DVA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+
Sbjct: 651 TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710
Query: 729 A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
V HQV++FVH+R T +TA ++ + A + + FL ++
Sbjct: 711 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
+++L GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771 QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
IY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
F+ LAD LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL +
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
R L+ LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE +
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLK 1086
++ + S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +Q
Sbjct: 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
PITRTVL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E
Sbjct: 1191 PITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKE 1250
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLP 1323
L FT+PI+EPLP QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP
Sbjct: 1251 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLP 1310
Query: 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383
VTAL YEALY F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R
Sbjct: 1311 VTALGCKAYEALY-NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFN 1369
Query: 1384 KASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443
K + +AVYIAPL+AL +ER DW+I+ + LG +V+ELTG+ D+K + K +I+
Sbjct: 1370 KYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIV 1426
Query: 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503
+TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +R
Sbjct: 1427 TTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVR 1486
Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563
IV LST+LANA+DL +W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP
Sbjct: 1487 IVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546
Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623
F H ++P L+ +P R +T ++L+ + + + D K +L +E+E I +
Sbjct: 1547 FQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-WLNMDEQEMENIIATV 1603
Query: 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
++ LK TL G+G H GL++ D++ V LF K+++
Sbjct: 1604 RDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQV 1642
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1665 | ||||||
| 225433894 | 2177 | PREDICTED: U5 small nuclear ribonucleopr | 0.994 | 0.760 | 0.861 | 0.0 | |
| 356556951 | 2183 | PREDICTED: U5 small nuclear ribonucleopr | 0.992 | 0.757 | 0.850 | 0.0 | |
| 356525813 | 2183 | PREDICTED: U5 small nuclear ribonucleopr | 0.992 | 0.757 | 0.848 | 0.0 | |
| 449459768 | 2175 | PREDICTED: U5 small nuclear ribonucleopr | 0.994 | 0.761 | 0.844 | 0.0 | |
| 449517355 | 2175 | PREDICTED: LOW QUALITY PROTEIN: U5 small | 0.994 | 0.761 | 0.845 | 0.0 | |
| 224136151 | 2157 | predicted protein [Populus trichocarpa] | 0.979 | 0.756 | 0.841 | 0.0 | |
| 147802492 | 2144 | hypothetical protein VITISV_042645 [Viti | 0.974 | 0.756 | 0.833 | 0.0 | |
| 224121998 | 2175 | predicted protein [Populus trichocarpa] | 0.988 | 0.756 | 0.819 | 0.0 | |
| 297850522 | 2171 | EMB1507 [Arabidopsis lyrata subsp. lyrat | 0.992 | 0.760 | 0.809 | 0.0 | |
| 357451431 | 2223 | U5 small nuclear ribonucleoprotein 200 k | 0.993 | 0.744 | 0.809 | 0.0 |
| >gi|225433894|ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2942 bits (7626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1448/1680 (86%), Positives = 1559/1680 (92%), Gaps = 24/1680 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62
Query: 64 RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL E L + +K+++ ++ ++ ++ EG YQPKTKETR
Sbjct: 63 RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181
Query: 165 QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
QLVSIG+LITD+QD GDAAG AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182 QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241
Query: 225 EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
E+++ + + N SGAMQMGGGIDDDD +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242 EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQ
Sbjct: 300 QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAEDQ 359
Query: 345 EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
EERKKIEEEM G G DLAAIL+QLHATRATAKERQK LEKSIREEARRLKDES DG RD
Sbjct: 360 EERKKIEEEMTGSGSDLAAILEQLHATRATAKERQKILEKSIREEARRLKDESGGDGDRD 419
Query: 405 RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
RRG VDRDA+ GWL GQRQLLDLD +AF QGG MAN+KC+LP GS R +KGYEE+HVP
Sbjct: 420 RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 479
Query: 464 AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
A+K L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 480 ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 539
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 540 KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 599
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 600 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 659
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 660 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 719
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 720 YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 779
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 780 GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 839
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 840 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 899
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 900 IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 959
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
MLRNP LYGL+ + L DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 960 MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 1019
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 1020 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1079
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL
Sbjct: 1080 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1139
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1140 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1199
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1200 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1259
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRH 1303
DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLGSQ+VLPVSFRH
Sbjct: 1260 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH 1319
Query: 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363
LILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNPIQTQVFTVLYNTDDNVLVA
Sbjct: 1320 LILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVLVA 1379
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
APTGSGKTIC+EFAILRNHQK SE+ ++RAVYIAP+EALAKERYRDWE KFG+GLGMRVV
Sbjct: 1380 APTGSGKTICAEFAILRNHQKGSES-IVRAVYIAPIEALAKERYRDWERKFGRGLGMRVV 1438
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
ELTGETA DLKLLE+GQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPV
Sbjct: 1439 ELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPV 1498
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543
LEVIVSRMRYIASQ ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH
Sbjct: 1499 LEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1558
Query: 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603
IQGVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVDL TYSS DG
Sbjct: 1559 IQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGG 1618
Query: 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
+ FLL EE+EPF+ IQEEML+ATLRHGVGYLHEGL DQEVVS LFEAG I++C
Sbjct: 1619 ENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVC 1678
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556951|ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2895 bits (7504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1435/1687 (85%), Positives = 1555/1687 (92%), Gaps = 34/1687 (2%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSA-------------------KKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL+EKL+K+ K++ D+ +A+ +G YQPKTKETR
Sbjct: 63 RPPELDEKLEKAKNKKKKKDRDAAADDAAAVPSKRRRVQHDSVLSASDDGVYQPKTKETR 122
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQ QLGGQPL+IVS AADEILAVLKND VKNPDKKK+IEKLLNPIP HVFD
Sbjct: 123 AAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDVVKNPDKKKDIEKLLNPIPGHVFD 182
Query: 165 QLVSIGKLITDYQDAGDAA-GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEED 223
QLVSIGKLITD+Q+A D G+ A +G E LDDD+GVAVEFEEN+DD+EESDLD+VQ+E+
Sbjct: 183 QLVSIGKLITDFQEAVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEE 242
Query: 224 EEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
EE+E+ V EPN+SGAMQMGG D+D E G NEGM LNVQDIDAYWLQRKISQAF+QQID
Sbjct: 243 EEDED-VTEPNSSGAMQMGGIDDEDMEEG--NEGMGLNVQDIDAYWLQRKISQAFEQQID 299
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQ CQKLAEEVLKILAEGDDREVENKLL+HL+FDKFSLIKFLLRNRLK+VWCTRLARAQD
Sbjct: 300 PQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD 359
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG- 402
QEER++IEEEM G +L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ DG
Sbjct: 360 QEERERIEEEMKG--TELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDK 417
Query: 403 ----RDRRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGY 457
R RR + DRD + GWL GQRQ+LDLD++AF QGG FMA +KCDLP+GS R +KGY
Sbjct: 418 ESRDRSRRVVADRDGESGWLKGQRQMLDLDSIAFAQGGFFMAKKKCDLPDGSYRHLSKGY 477
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
EEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL DN+LLC
Sbjct: 478 EEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFQPDNLLLC 537
Query: 518 APTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTGAGKTNVAVLTILQQ+A +RN DGS +HS YKIVYVAPMKALVAEVVGNLSNRLQ
Sbjct: 538 APTGAGKTNVAVLTILQQIARHRNPKDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQD 597
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
YDVKVRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
Sbjct: 598 YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 657
Query: 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
DNRGPVLESIVARTVRQIETTK++IRLVGLSATLPNYEDVALFLRV+L+KGLFYFDNSYR
Sbjct: 658 DNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYR 717
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPLSQQY+GI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDT
Sbjct: 718 PVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDT 777
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
AL NDTLGRFLKEDS SREIL +HTD+VKSNDLKDLLPYGFAIHHAGMTR DRQLVEDLF
Sbjct: 778 ALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLF 837
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQY
Sbjct: 838 ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY 897
Query: 877 DSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIG 936
DSYGEGII+TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EACNWIG
Sbjct: 898 DSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIG 957
Query: 937 YTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
YTYLY+RMLRNP+LYG+AP+VL DITL ERRADL+HTAATILDRNNLVKYDRKSGYFQV
Sbjct: 958 YTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQV 1017
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
TDLGRIASYYYI+HG+ISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
Sbjct: 1018 TDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1077
Query: 1057 DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1116
DRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
Sbjct: 1078 DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1137
Query: 1117 RGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQEL 1176
RGWAQLAEKALNL KMVTKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+
Sbjct: 1138 RGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEI 1197
Query: 1177 GELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPF 1236
GELIR PKMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF WDD++HGYVEPF
Sbjct: 1198 GELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPF 1257
Query: 1237 WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV 1296
WVIVEDNDGEYILHHEYFMLKKQYI+EDH+LNFTVPIYEPLPPQYFIRVVSD+WLGSQTV
Sbjct: 1258 WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTV 1317
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNP YE+LY+ FKHFNP+QTQVFTVLYN+
Sbjct: 1318 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYESLYKDFKHFNPVQTQVFTVLYNS 1377
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
DDNVLVAAPTGSGKTIC+EFAILRNHQK ++ VMR VY+AP+E+LAKERYRDWE KFG
Sbjct: 1378 DDNVLVAAPTGSGKTICAEFAILRNHQKWPDS-VMRVVYVAPIESLAKERYRDWEKKFGG 1436
Query: 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
GL +RVVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLI
Sbjct: 1437 GLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1496
Query: 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
GGQGGP+LEV+VSRMRYIASQVENKIR+VALSTSLANAKDLGEWIGATSHGLFNFPPGVR
Sbjct: 1497 GGQGGPILEVVVSRMRYIASQVENKIRVVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1556
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPLEIHIQG+DI NFEARMQAMTKPT+TAIVQHAKN KPALVFVP+RK+VRLTAVDL+T
Sbjct: 1557 PVPLEIHIQGIDIANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLIT 1616
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
YS D +K FLL AEE+EPF+D I +EMLK TLR GVGYLHEGLN D+++V+ LFE
Sbjct: 1617 YSGADSGEK-PFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDRDIVTQLFE 1675
Query: 1657 AGKIKIC 1663
AG I++C
Sbjct: 1676 AGWIQVC 1682
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525813|ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2892 bits (7496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1432/1687 (84%), Positives = 1551/1687 (91%), Gaps = 34/1687 (2%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSA-------------------KKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL+EKL+K+ K++ D+ + + +G YQPKTKETR
Sbjct: 63 RPPELDEKLEKAKNKKKKKDRDAAADDATAVPSKRRRVQHDSVLSTSDDGVYQPKTKETR 122
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQ QLGGQPL+IVS AADEILAVLKND VKNPDKKK+IEKLLNPIP HVFD
Sbjct: 123 AAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDTVKNPDKKKDIEKLLNPIPGHVFD 182
Query: 165 QLVSIGKLITDYQDAGDAA-GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEED 223
QLVSIGKLITD+Q+ D G+ A +G E LDDD+GVAVEFEEN+DD+EESDLD+VQ+E+
Sbjct: 183 QLVSIGKLITDFQEVVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEE 242
Query: 224 EEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
E++E+ VAEPN SGAMQMGG D+D E G NEGM LNVQDIDAYWLQRKISQAF+QQID
Sbjct: 243 EDDED-VAEPNGSGAMQMGGIDDEDMEEG--NEGMGLNVQDIDAYWLQRKISQAFEQQID 299
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQ CQKLAEEVLKILAEGDDREVENKLL+HL+FDKFSLIKFLLRNRLK+VWCTRLARAQD
Sbjct: 300 PQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD 359
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG- 402
QEER+KIEEEM G +L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ DG
Sbjct: 360 QEEREKIEEEMKG--TELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDK 417
Query: 403 ----RDRRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGY 457
R RRG+ DRD + GWL GQRQ+LDLD++AF QGG FMA +KCDLP+GS R +KGY
Sbjct: 418 ESRDRSRRGVADRDGESGWLKGQRQMLDLDSIAFTQGGFFMAKKKCDLPDGSYRHLSKGY 477
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
EEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL DN+LLC
Sbjct: 478 EEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLC 537
Query: 518 APTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTGAGKTNVAVLTILQQ+A +RN +DGS +HS YKIVYVAPMKALVAEVVGNLSNRLQ
Sbjct: 538 APTGAGKTNVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQE 597
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
YDVKVRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
Sbjct: 598 YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 657
Query: 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
DNRGPVLESIVARTVRQIETTK++IRLVGLSATLPNYEDVALFLRV+L+KGLFYFDNSYR
Sbjct: 658 DNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYR 717
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPLSQQY+GI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRD
Sbjct: 718 PVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDA 777
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
AL NDTLGRFLKEDS SREIL +HTD+VKSNDLKDLLPYGFAIHHAGMTR DRQLVEDLF
Sbjct: 778 ALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLF 837
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQY
Sbjct: 838 ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY 897
Query: 877 DSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIG 936
DSYGEGII+TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EACNWIG
Sbjct: 898 DSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIG 957
Query: 937 YTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
YTYLY+RMLRNP+LYG+AP+VL DITL ERRADL+HTAATILDRNNLVKYDRKSGYFQV
Sbjct: 958 YTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQV 1017
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
TDLGRIASYYYI+HG+ISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
Sbjct: 1018 TDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1077
Query: 1057 DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1116
DRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
Sbjct: 1078 DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1137
Query: 1117 RGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQEL 1176
RGWAQLAEKALNL KM TKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+
Sbjct: 1138 RGWAQLAEKALNLCKMGTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEI 1197
Query: 1177 GELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPF 1236
GELIR PKMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF WDD++HGYVEPF
Sbjct: 1198 GELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPF 1257
Query: 1237 WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV 1296
WVIVEDNDGEYILHHEYFMLKKQYI+EDH+LNFTVPIYEPLPPQYFIRVVSD+WLGSQTV
Sbjct: 1258 WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTV 1317
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRN YE+LY+ FKHFNP+QTQVFTVLYN+
Sbjct: 1318 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSSYESLYKDFKHFNPVQTQVFTVLYNS 1377
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
DDNVLVAAPTGSGKTIC+EFAILRNHQK ++ VMR VY+AP+EALAKERYRDWE KFG
Sbjct: 1378 DDNVLVAAPTGSGKTICAEFAILRNHQKGPDS-VMRVVYVAPVEALAKERYRDWERKFGG 1436
Query: 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
GL +RVVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLI
Sbjct: 1437 GLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1496
Query: 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
GGQGGP+LEV+VSRMRYIASQVENK RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR
Sbjct: 1497 GGQGGPILEVVVSRMRYIASQVENKSRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1556
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPLEIHIQG+DITNFEARMQAMTKPT+TAIVQHAKN KPAL+FVP+RK+VRLTAVD++T
Sbjct: 1557 PVPLEIHIQGIDITNFEARMQAMTKPTYTAIVQHAKNGKPALIFVPTRKHVRLTAVDMIT 1616
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
YS D +K FLL AEE+EPF+D I +EMLK TLR GVGYLHEGLN D ++V+ LFE
Sbjct: 1617 YSGADSGEK-PFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFE 1675
Query: 1657 AGKIKIC 1663
AG I++C
Sbjct: 1676 AGWIQVC 1682
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459768|ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2887 bits (7483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1417/1678 (84%), Positives = 1535/1678 (91%), Gaps = 22/1678 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RPPEL+EKLKKS +KKKE DP A+ + EG Y PKTKETRAA
Sbjct: 63 RPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND+ KNPDKKKEIEKLLNPIPN+VFDQL
Sbjct: 123 YEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFDQL 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQD DA G ANG LDDD+GVAVE E +++EEESDLDMVQE++E+E
Sbjct: 183 VSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVE-FEENEEEEESDLDMVQEDEEDE 241
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
++ VAEPN SGAMQM GGIDDDD + + GM+LNVQDIDAYWLQRKISQA++QQIDPQQ
Sbjct: 242 DD-VAEPNGSGAMQMDGGIDDDDLQ-ENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQ 299
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDRE+E KLL HLQF+KFSL+KFLLRNRLKVVWCTRLAR++DQEE
Sbjct: 300 CQKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEE 359
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
RKKIEEEMM LGPDLAAIL+QLHATRATAKERQKNLEKSIREEARRLKDES D R RR
Sbjct: 360 RKKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRR 419
Query: 407 GLVDRDAD-GGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
V+RD D GG GQ QLLDLD++AFQQG L MAN KC LP+GS R KGYEEIHVP +
Sbjct: 420 DPVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKL 479
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
KP +EK +KI+ MP+WAQPAFKGMTQLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 480 NAKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKT 539
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+AL+ N DGS+NH++YKIVYVAPMKALVAEVVGNLSNRLQ Y VKVRELS
Sbjct: 540 NVAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELS 599
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GDQTLTRQQI+ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 600 GDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 659
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+ +KGLF+FDNSYRPV L QQYI
Sbjct: 660 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYI 719
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI VKKPLQRFQLMNDLCYEKV++ AGKHQVLIFVHSRKET+KTARAIRD AL NDTL R
Sbjct: 720 GITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSR 779
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FLKEDS SREIL +HTD+VKSN+LKDLLPYGFAIHHAGMTR DRQLVEDLF DGH+QVLV
Sbjct: 780 FLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLV 839
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAH VIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQ+DS G GIII
Sbjct: 840 STATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIII 899
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EA NW+GYTYLY+RML
Sbjct: 900 TGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRML 959
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLA + DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASY
Sbjct: 960 RNPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASY 1019
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKP MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL+RVPIP+KE
Sbjct: 1020 YYITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE 1079
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1080 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1139
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV+KRMWSVQTPLRQF+GI N+ILMKLEKKD AWERYYDLS QELGELIR PKM
Sbjct: 1140 ALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKM 1199
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHGYVE FWV+VEDNDG
Sbjct: 1200 GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDG 1259
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
E+I HHE+F+LKKQYI+EDH+LNFTVPI EPLPPQYFIRVVSD+WLGSQT+LPVSFRHLI
Sbjct: 1260 EFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLI 1319
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAP 1365
LPEK+PPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVLVAAP
Sbjct: 1320 LPEKFPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP 1379
Query: 1366 TGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425
TGSGKTIC+EFAILRN+QK + V+RAVYIAP+E+LAKERYRDW+ KFG+GLG+RVVEL
Sbjct: 1380 TGSGKTICAEFAILRNYQKGQDN-VLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVEL 1438
Query: 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485
TGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE
Sbjct: 1439 TGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1498
Query: 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545
VIVSRMRYIASQ+ENKIRIVALSTSLANAKD+G+WIGATSHGLFNFPPGVRPVPLEIHIQ
Sbjct: 1499 VIVSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQ 1558
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
GVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVD+MTYSS D +K
Sbjct: 1559 GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEK 1618
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
FLL E++EPF+D I +EMLKA LRHGVGYLHEGL+ DQEVV+ LFEAG I++C
Sbjct: 1619 LPFLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVC 1676
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517355|ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2882 bits (7472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1418/1678 (84%), Positives = 1535/1678 (91%), Gaps = 22/1678 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RPPEL+EKLKKS +KKKE DP A+ + EG Y PKTKETRAA
Sbjct: 63 RPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND+ KNPDKKKEIEKLLNPIPN+VFDQL
Sbjct: 123 YEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFDQL 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQD DA G ANG LDDD+GVAVEFEEN++ EEESDLDMVQE++E+E
Sbjct: 183 VSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVEFEENEE-EEESDLDMVQEDEEDE 241
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
++ VAEPN SGAMQM GGIDDDD + + GM+LNVQDIDAYWLQRKISQA++QQIDPQQ
Sbjct: 242 DD-VAEPNGSGAMQMDGGIDDDDLQ-ENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQ 299
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDRE+E KLL HLQF+KFSL+KFLLRNRLKVVWCTRLAR++DQEE
Sbjct: 300 CQKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEE 359
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
R KIEEEMM LGPDLAAIL+QLHATRATAKERQKNLEKSIREEARRLKDES D R RR
Sbjct: 360 RXKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRR 419
Query: 407 GLVDRDAD-GGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
V+RD D GG GQ QLLDLD++AFQQG L MAN KC LP+GS R KGYEEIHVP +
Sbjct: 420 DPVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKL 479
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
KP +EK +KI+ MP+WAQPAFKGMTQLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 480 NAKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKT 539
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+AL+ N DGS+NH++YKIVYVAPMKALVAEVVGNLSNRLQ Y VKVRELS
Sbjct: 540 NVAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELS 599
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GDQTLTRQQI+ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 600 GDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 659
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+ +KGLF+FDNSYRPV L QQYI
Sbjct: 660 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYI 719
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI VKKPLQRFQLMNDLCYEKV++ AGKHQVLIFVHSRKET+KTARAIRD AL NDTL R
Sbjct: 720 GITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSR 779
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FLKEDS SREIL +HTD+VKSN+LKDLLPYGFAIHHAGMTR DRQLVEDLF DGH+QVLV
Sbjct: 780 FLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLV 839
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAH VIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQ+DS G GIII
Sbjct: 840 STATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIII 899
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EA NW+GYTYLY+RML
Sbjct: 900 TGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRML 959
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLA + DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASY
Sbjct: 960 RNPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASY 1019
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKP MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL+RVPIP+KE
Sbjct: 1020 YYITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE 1079
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1080 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1139
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV+KRMWSVQTPLRQF+GI N+ILMKLEKKD AWERYYDLS QELGELIR PKM
Sbjct: 1140 ALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKM 1199
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHGYVE FWV+VEDNDG
Sbjct: 1200 GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDG 1259
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
E+I HHE+F+LKKQYI+EDH+LNFTVPI EPLPPQYFIRVVSD+WLGSQT+LPVSFRHLI
Sbjct: 1260 EFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLI 1319
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAP 1365
LPEK+PPP ELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVLVAAP
Sbjct: 1320 LPEKFPPPMELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP 1379
Query: 1366 TGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425
TGSGKTIC+EFAILRN+QK + V+RAVYIAP+E+LAKERYRDW+ KFG+GLG+RVVEL
Sbjct: 1380 TGSGKTICAEFAILRNYQKGQDN-VLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVEL 1438
Query: 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485
TGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE
Sbjct: 1439 TGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1498
Query: 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545
VIVSRMRYIASQ+ENKIRIVALSTSLANAKD+G+WIGATSHGLFNFPPGVRPVPLEIHIQ
Sbjct: 1499 VIVSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQ 1558
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
GVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVD+MTYSS D +K
Sbjct: 1559 GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEK 1618
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
FLL E++EPF+D I +EMLKA LRHGVGYLHEGL+ DQEVV+ LFEAG I++C
Sbjct: 1619 LPFLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVC 1676
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136151|ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2861 bits (7416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1415/1682 (84%), Positives = 1534/1682 (91%), Gaps = 51/1682 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPE+LWG+IDPRSFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADAA-----------------AASEGTYQPKTKETRAA 106
RP EL+EK+ K+ +KKKERD ++A + EG YQPKTKETRAA
Sbjct: 63 RPAELDEKINKAKRKKKERDAVSEAGPTRQAKRRRLREESVLTSTEEGVYQPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPLNIVS AADEILAVLKN++V+ DK+KEIEKLLNPIPN++F+Q+
Sbjct: 123 YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNNMFEQV 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQDAGD AG ANG + LDD +GVAVEF+E+++DEEE + E+EEE
Sbjct: 183 VSIGRLITDYQDAGDGAGASVANGDDALDDGVGVAVEFDEDNEDEEEDSDLDMVPEEEEE 242
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
E+DV EP SGAMQMGGGIDDD E G+ANEG++LNVQDIDAYWLQRKIS A++QQIDPQQ
Sbjct: 243 EDDVVEPGGSGAMQMGGGIDDD-EMGEANEGLNLNVQDIDAYWLQRKISLAYEQQIDPQQ 301
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQEE
Sbjct: 302 CQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAKDQEE 361
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
RK+IEEEMMGLGPDLA IL+QLHATRATAKERQKNLEKSIREEARRLKDE+ DG RDRR
Sbjct: 362 RKQIEEEMMGLGPDLAGILEQLHATRATAKERQKNLEKSIREEARRLKDETGGDGDRDRR 421
Query: 407 GLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
GLVDRDA+ GW+ GQ Q+LDLD++AF+QGGL MAN+KCDLP GS + KGYEE+HVPA+
Sbjct: 422 GLVDRDAESGWVKGQPQMLDLDSIAFEQGGLLMANKKCDLPVGSFKHQKKGYEEVHVPAL 481
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
K KP+ P+E+ +KISEMP+WAQPAFKGM QLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 482 KQKPIPPDERFVKISEMPDWAQPAFKGMQQLNRVQSKVYETALFKADNVLLCAPTGAGKT 541
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+ALNRN DGSFN++NYKIVYVAPMKALVAEVVGNLSNRLQ Y V+
Sbjct: 542 NVAVLTILQQIALNRNPDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQ----- 596
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 597 ----------------------WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 634
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPN+EDVALFLRV+L+KGLF+FDNSYRPVPLSQQYI
Sbjct: 635 IVARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVDLDKGLFHFDNSYRPVPLSQQYI 694
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI +KKPLQRFQLMND+CYEKV+ VAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL R
Sbjct: 695 GINIKKPLQRFQLMNDICYEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSR 754
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FL+EDS SREILQ+HT++VKSNDLKDLLPYGFA+HHAGMTRGDRQLVEDLF DGHVQVLV
Sbjct: 755 FLREDSASREILQTHTELVKSNDLKDLLPYGFAVHHAGMTRGDRQLVEDLFADGHVQVLV 814
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGIII
Sbjct: 815 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIII 874
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRML
Sbjct: 875 TGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRML 934
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLAP+VL DITL ERRADL+H+AA ILD+NNLVKYDRKSGYFQ TDLGRIASY
Sbjct: 935 RNPTLYGLAPDVLTRDITLEERRADLIHSAAAILDKNNLVKYDRKSGYFQGTDLGRIASY 994
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+KE
Sbjct: 995 YYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE 1054
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1055 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1114
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV KRMWSVQTPLRQF+GIPNEILMKLEKKD +W+RYYDL PQE+GELIRFPKM
Sbjct: 1115 ALNLCKMVNKRMWSVQTPLRQFHGIPNEILMKLEKKDLSWDRYYDLKPQEIGELIRFPKM 1174
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTL+KF+HQFPKL LAAHVQPITRTVL+VELTIT DF W+D VHGYVEPFWVIVEDNDG
Sbjct: 1175 GRTLYKFIHQFPKLNLAAHVQPITRTVLRVELTITADFQWEDNVHGYVEPFWVIVEDNDG 1234
Query: 1246 EYILHHEYFMLKKQYIEE----DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
+YILHHEYFMLKKQY++E D +LNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF
Sbjct: 1235 DYILHHEYFMLKKQYVDEHQVVDLTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1294
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVL 1361
RHLILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVL
Sbjct: 1295 RHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVL 1354
Query: 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421
VAAPTGSGKTIC+EFAILRNHQK E+ VMRAVYIAPLEA+A+ERYRDWE KFG+GLGMR
Sbjct: 1355 VAAPTGSGKTICAEFAILRNHQKGPES-VMRAVYIAPLEAIARERYRDWERKFGRGLGMR 1413
Query: 1422 VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481
VVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG
Sbjct: 1414 VVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1473
Query: 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE 1541
PVLEVIVSRMRYIASQ+ENKIRIVALS+SLANAKDLGEWIGATSHGLFNFPPGVRPVPLE
Sbjct: 1474 PVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE 1533
Query: 1542 IHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601
IHIQGVDI NFEARMQAMTKPT+T+IVQHAKN KPA+VFVP+RK+VRL AVDLMTYSSMD
Sbjct: 1534 IHIQGVDIANFEARMQAMTKPTYTSIVQHAKNGKPAIVFVPTRKHVRLAAVDLMTYSSMD 1593
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
G +K FLL EE+EPFI IQEEML+ATL HG+GYLHEGL+ DQEVVS LFEAG I+
Sbjct: 1594 GGEKPPFLLRSIEELEPFIGKIQEEMLRATLHHGIGYLHEGLSSLDQEVVSQLFEAGWIQ 1653
Query: 1662 IC 1663
+C
Sbjct: 1654 VC 1655
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802492|emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2823 bits (7318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1400/1680 (83%), Positives = 1515/1680 (90%), Gaps = 57/1680 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62
Query: 64 RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL E L + +K+++ ++ ++ ++ EG YQPKTKETR
Sbjct: 63 RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181
Query: 165 QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
QLVSIG+LITD+QD GDAAG AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182 QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241
Query: 225 EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
E+++ + + N SGAMQMGGGIDDDD +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242 EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+V C
Sbjct: 300 QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVCC--------- 350
Query: 345 EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
M G L K +++ ++ + LKDES DG RD
Sbjct: 351 ----------MPQGQLL--------------KRDKRSWRRAFEKRLDVLKDESGGDGDRD 386
Query: 405 RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
RRG VDRDA+ GWL GQRQLLDLD +AF QGG MAN+KC+LP GS R +KGYEE+HVP
Sbjct: 387 RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 446
Query: 464 AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
A+K L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 447 ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 506
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 507 KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 566
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 567 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 626
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 627 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 686
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 687 YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 746
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 747 GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 806
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 807 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 866
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 867 IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 926
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
MLRNP LYGL+ + L DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 927 MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 986
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 987 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1046
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL
Sbjct: 1047 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1106
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1107 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1166
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1167 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1226
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRH 1303
DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLGSQ+VLPVSFRH
Sbjct: 1227 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH 1286
Query: 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363
LILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNPIQTQVFTVLYNTDDNVLVA
Sbjct: 1287 LILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVLVA 1346
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
APTGSGKTIC+EFAILRNHQK SE+ ++RAVYIAP+EALAKERYRDWE KFG+GLGMRVV
Sbjct: 1347 APTGSGKTICAEFAILRNHQKGSES-IVRAVYIAPIEALAKERYRDWERKFGRGLGMRVV 1405
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
ELTGETA DLKLLE+GQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPV
Sbjct: 1406 ELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPV 1465
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543
LEVIVSRMRYIASQ ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH
Sbjct: 1466 LEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1525
Query: 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603
IQGVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVDL TYSS DG
Sbjct: 1526 IQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGG 1585
Query: 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
+ FLL EE+EPF+ IQEEML+ATLRHGVGYLHEGL DQEVVS LFEAG I++C
Sbjct: 1586 ENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVC 1645
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121998|ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2763 bits (7161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1382/1686 (81%), Positives = 1513/1686 (89%), Gaps = 40/1686 (2%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLV TTD+R RDTHEPTGEPESLWG+IDPRSFGDRA RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVHTTDTRRRDTHEPTGEPESLWGRIDPRSFGDRAHRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RP EL+EK+ K+ KKKERD ++A + EG Y PKTKETRAA
Sbjct: 63 RPSELDEKINKAKGKKKERDALSEAVRGCQAKRRRLREESVLTSTEEGVYHPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPLNIVS AADEILAVLKN++V+ DK+KEIEKLLNPIPN +FDQ
Sbjct: 123 YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNSMFDQF 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESD-LDMVQEEDEE 225
VSIGKLITDYQD GD AG ANG + L+D++GVAVEF+E+++DEE LDMV +E+EE
Sbjct: 183 VSIGKLITDYQDGGDGAGVSVANGDDVLNDNVGVAVEFDEDNEDEEGDSDLDMVPQEEEE 242
Query: 226 EEEDVAEPNA--SGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
EEED A SGAMQMGG IDDD+ G ANEGM+LNVQDIDAYWLQRKISQA++QQID
Sbjct: 243 EEEDDDVVEAGGSGAMQMGGRIDDDEMRG-ANEGMNLNVQDIDAYWLQRKISQAYEQQID 301
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQQCQKLAEEVLK+LAEGDDREVE KLL HLQFDKFS IKFLL NRLK+VWCTRL R++D
Sbjct: 302 PQQCQKLAEEVLKLLAEGDDREVETKLLLHLQFDKFSFIKFLLWNRLKIVWCTRLFRSKD 361
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGR 403
QEERK+IEEEMMG PDLA IL++LHATRATAKERQKNLEKSIREEAR LKDE+ DG R
Sbjct: 362 QEERKQIEEEMMGSDPDLAGILEELHATRATAKERQKNLEKSIREEARWLKDEAGGDGDR 421
Query: 404 DRRGLVDRDADGGWL-GQRQLLDLDTLAFQQG-GLFMANRKCDLPEGSQRFTNKGYEEIH 461
RRGLVDRDA+ GWL GQ QLLDLD++AF+QG GL MAN+KCDLP GS + KGYEE+H
Sbjct: 422 GRRGLVDRDAESGWLKGQPQLLDLDSIAFEQGTGLLMANKKCDLPVGSFKHQKKGYEEVH 481
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K + + PNE+ +KISEMP+WAQPAF+GM QLNRVQS+VY++AL ADNILL APTG
Sbjct: 482 VPALKPRAIPPNERFVKISEMPDWAQPAFEGMQQLNRVQSKVYETALFKADNILLSAPTG 541
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVAVLTILQQ+ALNRN DGSFN++NYKIVYVAPMKALVAEVVGNLSNRLQ Y V+V
Sbjct: 542 AGKTNVAVLTILQQIALNRNLDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQV 601
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641
+ELSGDQT+TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGP
Sbjct: 602 KELSGDQTMTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGP 661
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIVARTVRQIETTKE+IRLVGLSATLPN+EDVALFLRV+LEKGLF+FDNSY+ S
Sbjct: 662 VLESIVARTVRQIETTKENIRLVGLSATLPNFEDVALFLRVDLEKGLFHFDNSYQA---S 718
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
+ RFQLMND+C+EKV+ VAGKHQVLIFVHSRKETAKTARAIRDTAL ND
Sbjct: 719 SSFS--------TRFQLMNDICHEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALAND 770
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL RFL+EDS SREILQ+ +++VKSNDLKDLLPYGFAIHHAGMTRGDR LVE+ F D HV
Sbjct: 771 TLSRFLREDSASREILQTDSELVKSNDLKDLLPYGFAIHHAGMTRGDRHLVEERFRDRHV 830
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQIYNPE+GAWTELSPLD+MQMLGRAGRPQYDSYGE
Sbjct: 831 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEEGAWTELSPLDVMQMLGRAGRPQYDSYGE 890
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GIIITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLG+VQNA+EAC+W+ YTYLY
Sbjct: 891 GIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGSVQNAREACHWLEYTYLY 950
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RM+RNP LYGLAP+VL DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGR
Sbjct: 951 VRMMRNPTLYGLAPDVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGR 1010
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IASYYYI+HGT+STYNEHLKPTMGDIELC LFSLSEEFKYVTVRQDEKMELAKLLD VPI
Sbjct: 1011 IASYYYITHGTMSTYNEHLKPTMGDIELCHLFSLSEEFKYVTVRQDEKMELAKLLDCVPI 1070
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWA+
Sbjct: 1071 PIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAR 1130
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LAEKALNL KM+ KRMWSVQTPLRQF+GI NE LM LEKKD +WERYYDL PQE+GELIR
Sbjct: 1131 LAEKALNLCKMINKRMWSVQTPLRQFHGILNETLMMLEKKDLSWERYYDLKPQEIGELIR 1190
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
FPKMG+TLHKF+HQFPKL LAAHVQPITRTVL+VELTIT DFLWD+ VHGYVEPFWVI+E
Sbjct: 1191 FPKMGKTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITADFLWDENVHGYVEPFWVIME 1250
Query: 1242 DNDGEYILHHEYFMLKKQYIEE----DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297
DN+G+ ILHHEYFMLK+Q ++E D +LNFTV I+EPLPPQYFIRVVSDKWLGSQTVL
Sbjct: 1251 DNNGDSILHHEYFMLKRQSVDEEQVVDPTLNFTVLIHEPLPPQYFIRVVSDKWLGSQTVL 1310
Query: 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTD 1357
P+S RHLILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTD
Sbjct: 1311 PISLRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTD 1370
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
DNVLVAAPT SGKT C+EFAILRNHQK E VMRAVYIAPLE +AKERYRDWE KFGQG
Sbjct: 1371 DNVLVAAPTASGKTTCAEFAILRNHQKGPEC-VMRAVYIAPLEVIAKERYRDWERKFGQG 1429
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
LGMRVVELTGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFI DELHLIG
Sbjct: 1430 LGMRVVELTGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFITDELHLIG 1489
Query: 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
QGGPVLEVIVSRMRYIASQ+ENKIRIVALS+SLANAKDLGEWIGATSHGLFNFPPGVRP
Sbjct: 1490 DQGGPVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRP 1549
Query: 1538 VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597
VPLEIHIQGVDI NF+ARMQAMTKPT+T IV+HAKN KPA+VFVP+RK+V+L AVDLMTY
Sbjct: 1550 VPLEIHIQGVDIANFDARMQAMTKPTYTYIVKHAKNGKPAIVFVPTRKHVQLAAVDLMTY 1609
Query: 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657
SS+DG +K AFLL +EE+EPFI IQEEML+ATL HGVGYLHEGL+ DQEVV LFEA
Sbjct: 1610 SSVDGGEKPAFLL-RSEELEPFIGKIQEEMLRATLYHGVGYLHEGLSSLDQEVVCQLFEA 1668
Query: 1658 GKIKIC 1663
G I++C
Sbjct: 1669 GWIQVC 1674
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850522|ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2761 bits (7158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1357/1677 (80%), Positives = 1525/1677 (90%), Gaps = 25/1677 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPELEEKLK----------------KSAKKKKERDPDADAAAASEGTYQPKTKETRAAY 107
RP ELE+KLK + +K+++ R+ ++ + YQPKTKETRAAY
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDTANVRQSKRRRLRE-ESVLTDTDDAVYQPKTKETRAAY 121
Query: 108 EAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLV 167
EAMLS+IQQQLGGQPL+IVSGAADEILAVLKND +NP+KK EIEKLLN I NH FDQLV
Sbjct: 122 EAMLSLIQQQLGGQPLSIVSGAADEILAVLKNDTFRNPEKKMEIEKLLNHIENHEFDQLV 181
Query: 168 SIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEE 227
SIGKLITD+Q+ GD+ G A+ E LDDD+GVAVEFEEN++D++ESD DMVQEED+EE+
Sbjct: 182 SIGKLITDFQEGGDSGGG-KADEEEGLDDDLGVAVEFEENEEDDDESDPDMVQEEDDEED 240
Query: 228 EDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQC 287
EP +G MQ+ GI+D D +GDANEG +LNVQDIDAYWLQRKISQA++QQIDPQQC
Sbjct: 241 ---EEPTRTGGMQVDAGINDQD-AGDANEGANLNVQDIDAYWLQRKISQAYEQQIDPQQC 296
Query: 288 QKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEER 347
Q LAEE+LK+LAEGDDR VENKLL HLQF+KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 297 QVLAEELLKVLAEGDDRVVENKLLMHLQFEKFSLVKFLLRNRLKVVWCTRLARAEDQEER 356
Query: 348 KKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRG 407
K+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+ DGGR RR
Sbjct: 357 KRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRRRRD 416
Query: 408 LVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
+ DRD++ GW+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 417 VADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVS 476
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+N+LLCAPTGAGKTN
Sbjct: 477 KK-VDSNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENLLLCAPTGAGKTN 535
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VA+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSG
Sbjct: 536 VAMLTILQQLEMNRNKDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELSG 595
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646
DQ+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+LLIIDEIHLLHDNRGPVLESI
Sbjct: 596 DQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESI 655
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIG
Sbjct: 656 VARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIG 715
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKETAKTA+AIRDTA+ NDTL RF
Sbjct: 716 ISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETAKTAKAIRDTAMANDTLSRF 775
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDSV+RE+LQSH D+VK+ +LK++LPYGFAIHHAG+TRGDR++VE+LF GHVQVLVS
Sbjct: 776 LKEDSVTREVLQSHVDIVKNGELKNILPYGFAIHHAGLTRGDREIVENLFAQGHVQVLVS 835
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIIT
Sbjct: 836 TATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDRHGEGIIIT 895
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+R
Sbjct: 896 GYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVR 955
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYY
Sbjct: 956 NPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY 1015
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI+HGTI+TYNEHLKPTMGDI+L RLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+KE+
Sbjct: 1016 YITHGTIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKET 1075
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LEEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKA
Sbjct: 1076 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKA 1135
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV +RMWSVQTPLRQF+GIPN+ILM LEKKD WERYYDLS QELGELIR PKMG
Sbjct: 1136 LNLSKMVGRRMWSVQTPLRQFHGIPNDILMNLEKKDLVWERYYDLSSQELGELIRSPKMG 1195
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHKF+HQFPKL L+AHVQPITRTVLKVELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1196 RPLHKFIHQFPKLTLSAHVQPITRTVLKVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGE 1255
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL 1306
ILHHEYF+LK+QYI+EDH+LNFTVPI+EPLPPQYF+RVVSDKWLGS+TVLPVSFRHLIL
Sbjct: 1256 KILHHEYFLLKQQYIDEDHTLNFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLIL 1315
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
PEKYPPPTELLDLQPLPVTALRNP YE LYQ FKHFNP+QTQVFTVLYNT+DNVLVAAPT
Sbjct: 1316 PEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPT 1375
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKTIC+EFAILRNHQ+ + MR VYIAPLEA+AKE++R WE KFG+GLG+RVVELT
Sbjct: 1376 GSGKTICAEFAILRNHQEGPD-ATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELT 1434
Query: 1427 GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486
GETA+DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQGGPVLEV
Sbjct: 1435 GETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQGGPVLEV 1494
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546
IVSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+SHGLFNFPPGVRPVPLEIHIQG
Sbjct: 1495 IVSRMRYISSQVNNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQG 1554
Query: 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606
VDI++FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDLM YS MD Q
Sbjct: 1555 VDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSP 1614
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
FLL EE++PF+ I+EE LK TLRHG+GYLHEGL+ DQE+V+ LFEAG+I+ C
Sbjct: 1615 DFLLGQLEELDPFVSQIREETLKETLRHGIGYLHEGLSSLDQEIVTQLFEAGRIQAC 1671
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451431|ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2760 bits (7155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1400/1730 (80%), Positives = 1518/1730 (87%), Gaps = 75/1730 (4%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWG+ID ++FGDR
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDAKNFGDRVSHD 62
Query: 64 RPPELEEKLKKSA---------------------KKKKERDPDADAAAASEGTYQPKTKE 102
RPPEL EKL + K++ ++ A +G YQPKTKE
Sbjct: 63 RPPELTEKLNAAKKKKKDREKDRDPLDSGSGQRRNKRRRMMEESVLTATDDGVYQPKTKE 122
Query: 103 TRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHV 162
TRAAYEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND +KN DKKK+IEKLLN IPN V
Sbjct: 123 TRAAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDTLKNVDKKKDIEKLLNTIPNQV 182
Query: 163 FDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDD--MGVAVEFEENDDDEEESDLDMVQ 220
FDQLVSIGKLITD+Q+ G+ G G D D +GVAVEFEEN+DDE+E V
Sbjct: 183 FDQLVSIGKLITDFQEVGEVGGGGGGGGEVDGGLDDDVGVAVEFEENEDDEDEESDLDVV 242
Query: 221 EEDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQ 280
+EDEE+E+DV E N SG MQMGG IDD+D DANEGM+LNVQDIDAYWLQRKIS A++Q
Sbjct: 243 QEDEEDEDDVVEGNGSGGMQMGG-IDDEDME-DANEGMNLNVQDIDAYWLQRKISHAYEQ 300
Query: 281 QIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLAR 340
IDP QCQKLA EVLKILA+ DDREVENKLL+HL++DKFSLIKFLLRNRLK++WCTRLAR
Sbjct: 301 LIDPDQCQKLAGEVLKILADPDDREVENKLLFHLEYDKFSLIKFLLRNRLKILWCTRLAR 360
Query: 341 AQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASD 400
AQDQEER+ IEEEM L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ D
Sbjct: 361 AQDQEERETIEEEMKE-SDLLQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTVGD 419
Query: 401 GGRDRR--------GLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQR 451
G ++R G DRD + GWL GQRQ+LDLD L F+QGGLFMA +KCDLP+GS R
Sbjct: 420 GDKERDRDRDRIRRGAGDRDGESGWLKGQRQMLDLDNLTFEQGGLFMAKKKCDLPDGSYR 479
Query: 452 FTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
KGYEEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL
Sbjct: 480 HLEKGYEEIHVPALKAKPLDPNEKLLKISAMPDWAQPAFKGMTQLNRVQSKVYETALFKP 539
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNL 570
DN+LLCAPTGAGKTNVAVLTILQQ+A +RN DDGS +HS YKIVYVAPMKALVAEVVGNL
Sbjct: 540 DNLLLCAPTGAGKTNVAVLTILQQIARHRNTDDGSIDHSAYKIVYVAPMKALVAEVVGNL 599
Query: 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIID 630
SNRLQ Y+V VRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL+IID
Sbjct: 600 SNRLQDYNVTVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLVIID 659
Query: 631 EIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY 690
EIHLLHDNRGPVLESIVARTVRQIET+K++IRLVGLSATLPNYEDVALFLRV+L KGLFY
Sbjct: 660 EIHLLHDNRGPVLESIVARTVRQIETSKDYIRLVGLSATLPNYEDVALFLRVDLNKGLFY 719
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750
FDNSYRPVPLSQQYIGI +KKPLQRFQLMND+CY KV+ VAGKHQVLIFVHSRKETAKTA
Sbjct: 720 FDNSYRPVPLSQQYIGITIKKPLQRFQLMNDICYRKVLDVAGKHQVLIFVHSRKETAKTA 779
Query: 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810
RAIRD AL +DTLGRFLKEDS SREIL +HTD+VKS+DLKDLLPYGFAIHHAGMTR DRQ
Sbjct: 780 RAIRDAALADDTLGRFLKEDSASREILHTHTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQ 839
Query: 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870
LVEDLF DGH QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGR
Sbjct: 840 LVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGR 899
Query: 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKE 930
AGRPQYDSYGEGII+TGHSEL+YYLSLMNQQLPIESQF+SKLADQLNAEIVLGTVQNAKE
Sbjct: 900 AGRPQYDSYGEGIILTGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAKE 959
Query: 931 ACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL---------------VHTA 975
AC+WIGYTYLY+RMLRNP+LYGLAP+VL DITL ERRADL +HTA
Sbjct: 960 ACHWIGYTYLYVRMLRNPSLYGLAPDVLSRDITLEERRADLFIELLEKGTKSLWTIIHTA 1019
Query: 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI+HGTISTYNEHLKPTMGDIELCRLFSL
Sbjct: 1020 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSL 1079
Query: 1036 SEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSD 1095
SEEFKYVTVRQDEKMELAKLLDRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLS+TSD
Sbjct: 1080 SEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSMTSD 1139
Query: 1096 MVFIT----------------------QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
MVFIT QSAGRLLRALFEIVLKRGWAQLAEKALNL KMV
Sbjct: 1140 MVFITQFIRSGVPLILLFADSCIMFLFQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMV 1199
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
TKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+GELIR PKMGRTLH+F+
Sbjct: 1200 TKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWERYYDLSSQEIGELIRAPKMGRTLHRFI 1259
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL LAAHVQPITRTVL VELTITPDF WDD++HGYVEPFWVIVEDNDGEYILHHEY
Sbjct: 1260 HQFPKLNLAAHVQPITRTVLGVELTITPDFAWDDRMHGYVEPFWVIVEDNDGEYILHHEY 1319
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LKKQYIEEDH+LNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP
Sbjct: 1320 FLLKKQYIEEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1379
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
TELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYN+DDNVLVAAPTGSGKTIC
Sbjct: 1380 TELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTIC 1439
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+EFAILRNHQK ++ VMR VYIAP+EALAKERYRDWE KFG GL ++VVELTGETA DL
Sbjct: 1440 AEFAILRNHQKLPDS-VMRVVYIAPVEALAKERYRDWEKKFGGGLKLKVVELTGETATDL 1498
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493
KLLEKGQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY
Sbjct: 1499 KLLEKGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1558
Query: 1494 IASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553
I+SQ+ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI NFE
Sbjct: 1559 ISSQLENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFE 1618
Query: 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613
ARMQAMTKPT+T+I QHAKN+KPA+VFVP+RK+VRLTAVDL+TYS D +K FLL
Sbjct: 1619 ARMQAMTKPTYTSIAQHAKNKKPAIVFVPTRKHVRLTAVDLITYSGADSGEK-PFLLRSL 1677
Query: 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
EE+EPFI+ I +EMLK TLR GVGYLHEGLN D ++V+ LFEAG I++C
Sbjct: 1678 EELEPFINKISDEMLKVTLREGVGYLHEGLNSLDHDIVAQLFEAGWIQVC 1727
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1665 | ||||||
| TAIR|locus:2037375 | 2171 | emb1507 "embryo defective 1507 | 0.992 | 0.761 | 0.764 | 0.0 | |
| TAIR|locus:2059969 | 2172 | AT2G42270 [Arabidopsis thalian | 0.992 | 0.761 | 0.720 | 0.0 | |
| UNIPROTKB|O75643 | 2136 | SNRNP200 "U5 small nuclear rib | 0.831 | 0.647 | 0.607 | 0.0 | |
| ZFIN|ZDB-GENE-081105-64 | 2134 | si:ch211-251j10.5 "si:ch211-25 | 0.830 | 0.647 | 0.606 | 0.0 | |
| UNIPROTKB|E1BH78 | 2136 | LOC100850262 "Uncharacterized | 0.831 | 0.647 | 0.605 | 0.0 | |
| UNIPROTKB|F1LNJ2 | 2139 | Ascc3l1 "Protein Ascc3l1" [Rat | 0.831 | 0.647 | 0.606 | 0.0 | |
| FB|FBgn0263599 | 2142 | l(3)72Ab "lethal (3) 72Ab" [Dr | 0.815 | 0.633 | 0.596 | 0.0 | |
| WB|WBGene00012896 | 2145 | snrp-200 [Caenorhabditis elega | 0.818 | 0.635 | 0.545 | 0.0 | |
| UNIPROTKB|Q9U2G0 | 2145 | Y46G5A.4 "Putative U5 small nu | 0.818 | 0.635 | 0.545 | 0.0 | |
| ASPGD|ASPL0000051297 | 2208 | AN10194 [Emericella nidulans ( | 0.836 | 0.630 | 0.520 | 0.0 |
| TAIR|locus:2037375 emb1507 "embryo defective 1507" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6601 (2328.7 bits), Expect = 0., P = 0.
Identities = 1282/1676 (76%), Positives = 1435/1676 (85%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPXXXXXXXXXXXXXXXRDPDADAAAAS---------------EGTYQPKTKETRAAYE 108
RP D S + YQPKTKETRAAYE
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
AML +IQ+QLGGQP +IVSGAADEILAVLKNDA +NP+KK EIEKLLN I NH FDQLVS
Sbjct: 123 AMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLLNKIENHEFDQLVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITD+Q +GVAV MV+
Sbjct: 183 IGKLITDFQEGGDSGGGRANDDEGLDDD-LGVAVEFEENEEDDEESDPDMVEEDDDEEDD 241
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
EP +G MQ+ +LNVQDIDAYWLQRKISQA++QQIDPQQCQ
Sbjct: 242 ---EPTRTGGMQVDAGINDEDAGDANEGT-NLNVQDIDAYWLQRKISQAYEQQIDPQQCQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
LAEE+LKILAEGDDR VE+KLL HLQ++KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 298 VLAEELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXXXXXXXXX 408
+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+
Sbjct: 358 RIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDV 417
Query: 409 XXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKH 467
W+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 418 ADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSK 477
Query: 468 KPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNV 527
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+NILLCAPTGAGKTNV
Sbjct: 478 K-VDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNV 536
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSGD
Sbjct: 537 AMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGD 596
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
Q+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESIV
Sbjct: 597 QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV 656
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIGI
Sbjct: 657 ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGI 716
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKET+KTARAIRDTA+ NDTL RFL
Sbjct: 717 SVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFL 776
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
KEDSV+R++L SH D+VK++DLKD+LPYGFAIHHAG++RGDR++VE LF GHVQVLVST
Sbjct: 777 KEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVST 836
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
ATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIITG
Sbjct: 837 ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITG 896
Query: 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+RN
Sbjct: 897 YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN 956
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYY 1007
P LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYYY
Sbjct: 957 PTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY 1016
Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESL 1067
I+HGTI+TYNEHLKPTMGDI+L RLFSLS+EFKYVTVRQDEKMELAKLLDRVPIP+KE+L
Sbjct: 1017 ITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL 1076
Query: 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKAL 1127
EEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKAL
Sbjct: 1077 EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL 1136
Query: 1128 NLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGR 1187
NLSKMV KRMWSVQTPLRQF+G+ N+ILM+LEKKD WERYYDLS QELGELIR PKMG+
Sbjct: 1137 NLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGK 1196
Query: 1188 TLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEY 1247
LHKF+HQFPK+ L+AHVQPITRTVL VELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1197 PLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEK 1256
Query: 1248 ILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILP 1307
ILHHEYF+LKKQYI+EDH+L+FTVPI+EPLPPQYF+RVVSDKWLGS+TVLPVSFRHLILP
Sbjct: 1257 ILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILP 1316
Query: 1308 EKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTG 1367
EKYPPPTELLDLQPLPVTALRNP YE LYQ FKHFNP+QTQVFTVLYNT+DNVLVAAPTG
Sbjct: 1317 EKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTG 1376
Query: 1368 SGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG 1427
SGKTIC+EFAILRNH + + MR VYIAPLEA+AKE++R WE KFG+GLG+RVVELTG
Sbjct: 1377 SGKTICAEFAILRNHHEGPDA-TMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTG 1435
Query: 1428 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487
ETA+DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQ GPVLEVI
Sbjct: 1436 ETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVI 1495
Query: 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV 1547
VSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+SHGLFNFPPGVRPVPLEIHIQGV
Sbjct: 1496 VSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGV 1555
Query: 1548 DITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607
DI++FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDLM YS MD Q
Sbjct: 1556 DISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPD 1615
Query: 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
FLL EE++PF++ I+EE LK TL HG+GYLHEGL+ DQE+V+ LFEAG+I++C
Sbjct: 1616 FLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVC 1671
|
|
| TAIR|locus:2059969 AT2G42270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6141 (2166.8 bits), Expect = 0., P = 0.
Identities = 1209/1677 (72%), Positives = 1378/1677 (82%)
Query: 4 NLGGG-AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFR 62
NLGGG AE AR KQY Y+ NSSLVL +D R RDTHE +GEPESL G+IDP+SFGDR R
Sbjct: 3 NLGGGGAEEQARLKQYGYKVNSSLVLNSDERRRDTHESSGEPESLRGRIDPKSFGDRVVR 62
Query: 63 GRPPXXXXXXXXXXXXXXXRDPDADAAAAS--------------EGTYQPKTKETRAAYE 108
GRP D A + +G YQPKTKETR A+E
Sbjct: 63 GRPHELDERLNKSKKKKERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
ML +IQQQLGGQPL+IV GAADEILAVLKN++VKN +KK EIEKLLN I + VF Q VS
Sbjct: 123 IMLGLIQQQLGGQPLDIVCGAADEILAVLKNESVKNHEKKVEIEKLLNVITDQVFSQFVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITDY+ +GVA+ MVQ
Sbjct: 183 IGKLITDYEEGGDSLSGKASEDGGLDYD-IGVALECEEDDDESDLD---MVQDEKDEEDE 238
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
V E N +G +Q+ SLNV DIDAYWLQRKISQ ++Q+ID Q+CQ
Sbjct: 239 DVVELNKTGVVQVGVAINGEDARQAKEDT-SLNVLDIDAYWLQRKISQEYEQKIDAQECQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
+LAEE+LKILAEG+DR+VE KLL HLQF+KFSL+KFLL+NRLKVVWCTRLAR +DQEER
Sbjct: 298 ELAEELLKILAEGNDRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRLARGRDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDE-SASXXXXXXXX 407
+IEEEM+GLG +LAAI+ +LHA RATAKER++ EK I+EEA+ L D+ S
Sbjct: 358 QIEEEMLGLGSELAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDDDSGVDGDRGMRD 417
Query: 408 XXXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
WL GQRQ++DL++LAF QGG N KC+LP+ S R K ++E+HVP +
Sbjct: 418 VDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRGKEFDEVHVPWVS 477
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K D NEKL+KIS++PEWAQPAF+GM QLNRVQS+VY +AL ADNILLCAPTGAGKTN
Sbjct: 478 KK-FDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTN 536
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VAVLTIL QL LN N G+FNH NYKIVYVAPMKALVAEVV +LS RL+ + V V+ELSG
Sbjct: 537 VAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSG 596
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESI 646
DQ+LT Q+I+ETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESI
Sbjct: 597 DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESI 656
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIE+TKEHIRLVGLSATLPN +DVA FLRV+L+ GLF FD SYRPVPL QQYIG
Sbjct: 657 VARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIG 716
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPL+RFQLMND+CY+KVVAVAGKHQVLIFVHSRKETAKTARAIRDTA+ NDTL RF
Sbjct: 717 INVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRF 776
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDS SREIL+ ++K+NDLK+LLPYGFAIHHAG+TR DR++VE+ F G++QVL+S
Sbjct: 777 LKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLIS 836
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPE+G W ELSPLD+MQM+GRAGRPQYD GEGIIIT
Sbjct: 837 TATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIIT 896
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+S+L+YYL LMN+QLPIESQF+SKLADQLNAEIVLGT+QNA+EAC+W+GYTYLY+RM+R
Sbjct: 897 GYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVR 956
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYG++P+ L +D+ L ERRADL+H+AATILD+NNL+KYDRKSG+FQVTDLGRIASYY
Sbjct: 957 NPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYY 1016
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YISHGTI+ YNE+LKPTM DIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE+
Sbjct: 1017 YISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKET 1076
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LE+PSAKINVLLQ YIS+LKLEGLSLTSDMV+ITQSAGRLLRA+FEIVLKRGWAQL++KA
Sbjct: 1077 LEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKA 1136
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV KRMWSVQTPL QF GIP EILMKLEK D WERYYDLS QELGELI PKMG
Sbjct: 1137 LNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMG 1196
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHK++HQFPKL LAAHVQPI+R+VL+VELT+TPDF WDDK + YVEPFW+IVEDNDGE
Sbjct: 1197 RPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGE 1256
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL 1306
ILHHEYF+ KK+ I+EDH+LNFTVPI EP+PPQYFIRVVSDKWL S TVLPVSFRHLIL
Sbjct: 1257 KILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLIL 1316
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
PEKYPPPTELLDLQPLPV ALRNP YE LYQ FKHFNP+QTQVFTVLYNT DNV+VAAPT
Sbjct: 1317 PEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPT 1376
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKTIC+EFAILRNH + ++ MR VYIAPLEA+AKE++RDWE KFG+GLG+RVVELT
Sbjct: 1377 GSGKTICAEFAILRNHLEGPDSA-MRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELT 1435
Query: 1427 GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486
GET +DLKLLEKGQIIISTPEKWDALSRRWKQRKY+QQVSLFI+DELHLIGGQGG VLEV
Sbjct: 1436 GETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEV 1495
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546
IVSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+S G+FNFPP VRPVPLEIHI G
Sbjct: 1496 IVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHG 1555
Query: 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606
VDI +FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDL+ YS MD +
Sbjct: 1556 VDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSP 1615
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
FLL EE+EPF+ I EE LK TLRHG+GYLHEGL+ DQE+V+ LFEAG+I++C
Sbjct: 1616 DFLLGNLEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVC 1672
|
|
| UNIPROTKB|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 4438 (1567.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 854/1405 (60%), Positives = 1086/1405 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1264 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1323
Query: 1339 -FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR ++SE G R VYI
Sbjct: 1324 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-G--RCVYIT 1380
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG IIISTPEKWD LSRRWK
Sbjct: 1381 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK 1440
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
QRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1441 QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1500
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +KP
Sbjct: 1501 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-KKPV 1559
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
+VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +GVG
Sbjct: 1560 IVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1618
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
YLHEGL+ ++ +V LF +G I++
Sbjct: 1619 YLHEGLSPMERRLVEQLFSSGAIQV 1643
|
|
| ZFIN|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 4436 (1566.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 851/1404 (60%), Positives = 1083/1404 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ ++ I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 257 LHPRDIDAFWLQRQLSRFYNDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 313
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R +++CT LA AQ + E++KI +M DL+ +L QL T KE
Sbjct: 314 FDFIKVLRQHRRMILYCTMLASAQSEAEKEKIINKMEA-DQDLSKVLYQLQETE---KED 369
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + + + RQLLDL+ L F QG FM
Sbjct: 370 IIREERSRRERMRKSRVDDLESMDIDHGES---------VSSRQLLDLEDLTFTQGSHFM 420
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E L+ I ++P++AQ F+G LNR
Sbjct: 421 ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDEETLVGIEKLPKYAQAGFEGFKSLNR 480
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS+++K+ + + +N+L+CAPTGAGKTNVA++ +L+++ + N DG+ N +++KI+Y+AP
Sbjct: 481 IQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAP 540
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 541 MRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER 600
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLES++ART+R +E T+E +RL+GLSATLPNYEDVA
Sbjct: 601 TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT 660
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
LRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 661 CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 720
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 721 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 780
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 781 IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 840
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYDS GEGI+IT H EL+YYLSL+NQQLPIESQ V KLAD LNA
Sbjct: 841 LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNA 900
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GYTYLY+RMLRNP LYG++ + D L RR DLVHTAAT+
Sbjct: 901 EIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSIDPLLERRRMDLVHTAATV 960
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++NNLVKYD++SG FQVTDLGRIAS++YI+H +I TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 961 LEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE 1020
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQAYISQLKLEG +L +DMV+
Sbjct: 1021 FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY 1080
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW +PLRQF +P E++ K+
Sbjct: 1081 VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI 1140
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VHQFPKL LA H+QPITR+ LKVELT
Sbjct: 1141 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT 1200
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WDDK+HG E FW++VED D E +LHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1201 ITPDFQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP 1260
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIR+ SD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1261 PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNGAFESLYQN 1320
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR +E G R VYI P
Sbjct: 1321 FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAE-G--RCVYITP 1377
Query: 1399 LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458
+EALA++ + DW KF + L +VV LTGET+ DLKLL KG II+STP+KWD LSRRWKQ
Sbjct: 1378 MEALAEQVFLDWHQKFQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ 1437
Query: 1459 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG 1518
RK VQ VSLFIIDE+HLIGG GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1438 RKNVQNVSLFIIDEVHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 1497
Query: 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578
W+G ++ FNF P VRPVPLE+HIQG ++++ + R+ +M KP + AI++H+ + KP L
Sbjct: 1498 HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPS-KPVL 1556
Query: 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638
VFVPSR+ RLTA+D++T+ + D + FL +++ PF++N+ + LK TL +GVGY
Sbjct: 1557 VFVPSRRQTRLTAIDILTFCAADVVPQR-FLHSTEKDLVPFMENLSDVTLKETLSNGVGY 1615
Query: 1639 LHEGLNKTDQEVVSALFEAGKIKI 1662
LHEGL+ T++ +V LF +G I++
Sbjct: 1616 LHEGLSPTERRIVEHLFTSGAIQV 1639
|
|
| UNIPROTKB|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 4432 (1565.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 851/1405 (60%), Positives = 1085/1405 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
E+VLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1264 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1323
Query: 1339 -FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR + SE G R VYI
Sbjct: 1324 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSE-G--RCVYIT 1380
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG +I+STPEKWD LSRRWK
Sbjct: 1381 PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWK 1440
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
QRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1441 QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1500
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +KP
Sbjct: 1501 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-KKPV 1559
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
+VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +GVG
Sbjct: 1560 IVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1618
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
YLHEGL+ ++ +V LF +G I++
Sbjct: 1619 YLHEGLSPLERRLVEQLFSSGAIQV 1643
|
|
| UNIPROTKB|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 4422 (1561.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 854/1408 (60%), Positives = 1085/1408 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDK---VHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
ITPDF WD+K VHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++E
Sbjct: 1204 ITPDFQWDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE 1263
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEAL 1335
PLPPQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+L
Sbjct: 1264 PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL 1323
Query: 1336 YQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV 1394
YQ F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR + SE G R V
Sbjct: 1324 YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSE-G--RCV 1380
Query: 1395 YIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
YI P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG IIISTPEKWD LSR
Sbjct: 1381 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSR 1440
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514
RWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NA
Sbjct: 1441 RWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA 1500
Query: 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574
KD+ W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +
Sbjct: 1501 KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-K 1559
Query: 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634
KP +VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +
Sbjct: 1560 KPVIVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1618
Query: 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
GVGYLHEGL+ ++ +V LF +G I++
Sbjct: 1619 GVGYLHEGLSPMERRLVEQLFSSGAIQV 1646
|
|
| FB|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 4317 (1524.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 825/1382 (59%), Positives = 1056/1382 (76%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
D Q A +VLKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA A
Sbjct: 283 DAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASA 342
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
Q ER++I E+M G LA IL QL T K + E+ ++R K ++
Sbjct: 343 QTDSERQRIREKMRG-NSALAKILRQLD----TGKSEDQ--EEGEARGSKRGKGDAEDGG 395
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+H
Sbjct: 396 AAAAGQVA---------GVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVH 446
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K P D NE+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTG
Sbjct: 447 VPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTG 506
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+++++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V
Sbjct: 507 AGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTV 566
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
EL+GD LTR+QI TQ+IV TPEKWDIITRK G+RT+ LV+ RGP
Sbjct: 567 SELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGP 626
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLE++VART+R IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L
Sbjct: 627 VLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLE 686
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE D
Sbjct: 687 QQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQD 746
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TLG FLKE S S E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+
Sbjct: 747 TLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHI 806
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GE
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGE 866
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL++YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLY
Sbjct: 867 GILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLY 926
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
IRMLRNP LYG++ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGR
Sbjct: 927 IRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGR 986
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS+YY++H T+ TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPI
Sbjct: 987 IASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPI 1046
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KES+EE SAK+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQ
Sbjct: 1047 PIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQ 1106
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KM+ +RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR
Sbjct: 1107 LADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIR 1166
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PK+G+T+HKFVHQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++E
Sbjct: 1167 VPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIE 1226
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D D E ILHHE+F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSF
Sbjct: 1227 DVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSF 1286
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNV 1360
RHLILPEK PPTELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV
Sbjct: 1287 RHLILPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENV 1346
Query: 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420
V APTGSGK +EFAI+R S+ R VY+ EALA + DW KFG L +
Sbjct: 1347 FVGAPTGSGKMTIAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFGS-LDI 1402
Query: 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480
+VV+LTGET DLKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+
Sbjct: 1403 KVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEE 1462
Query: 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL 1540
GPVLE++ SRMRYI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PL
Sbjct: 1463 GPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPL 1522
Query: 1541 EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600
E+HIQG ++T+ R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++
Sbjct: 1523 ELHIQGYNVTHNATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAAS 1581
Query: 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
D Q + F E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G +
Sbjct: 1582 DL-QPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAV 1640
Query: 1661 KI 1662
++
Sbjct: 1641 QV 1642
|
|
| WB|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 3949 (1395.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 757/1387 (54%), Positives = 1009/1387 (72%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDN 1359
RHLILPEKYPPPTELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419
V+V AP GSGKT +E A+LR+ + E +AVYI P+E +A + Y DW+ + +G
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIG 1396
Query: 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
+V LTGE MDLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG
Sbjct: 1397 HTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGAS 1456
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP 1539
G V EV+ SR RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVP
Sbjct: 1457 NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVP 1516
Query: 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNE-KPALVFVPSRKYVRLTAVDLMTY 1597
L++ I+ ++++ +R AM +P + AI +HA K E KPALVFVP R+ R AV L+T
Sbjct: 1517 LDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTM 1576
Query: 1598 SSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
+ DG K L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE
Sbjct: 1577 ALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFE 1636
Query: 1657 AGKIKIC 1663
+ I++C
Sbjct: 1637 SNAIQVC 1643
|
|
| UNIPROTKB|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 3949 (1395.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 757/1387 (54%), Positives = 1009/1387 (72%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDN 1359
RHLILPEKYPPPTELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419
V+V AP GSGKT +E A+LR+ + E +AVYI P+E +A + Y DW+ + +G
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIG 1396
Query: 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
+V LTGE MDLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG
Sbjct: 1397 HTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGAS 1456
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP 1539
G V EV+ SR RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVP
Sbjct: 1457 NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVP 1516
Query: 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNE-KPALVFVPSRKYVRLTAVDLMTY 1597
L++ I+ ++++ +R AM +P + AI +HA K E KPALVFVP R+ R AV L+T
Sbjct: 1517 LDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTM 1576
Query: 1598 SSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
+ DG K L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE
Sbjct: 1577 ALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFE 1636
Query: 1657 AGKIKIC 1663
+ I++C
Sbjct: 1637 SNAIQVC 1643
|
|
| ASPGD|ASPL0000051297 AN10194 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 3798 (1342.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 736/1415 (52%), Positives = 999/1415 (70%)
Query: 260 LNVQDIDAYWLQRKISQAF-DQQIDPQQCQKLAEEVLKILAEGDDR---EVENKLLYHLQ 315
++ +DIDAYWLQR+I A+ D I ++ + E + +G R +VEN L+
Sbjct: 297 VSARDIDAYWLQRQIGAAYSDAHIQQEKATQALEIMEGKTEDGSPRSLRDVENDLMELFD 356
Query: 316 FDKFSLIKFLLRNRLKVVWCTRLAR-AQDQEERKKIEEEMMGLGPDLAAILDQLHATRAT 374
+D L+ L+ NR KVVW TR R A+D + R +E EM+ G ILD++ +
Sbjct: 357 YDFPDLVAKLVTNRDKVVWTTRWRRVAEDADARNLVESEMVEAGH--RGILDEIRGKTVS 414
Query: 375 AKERQKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQG 434
EK I+ + + A L ++L++L+ L F QG
Sbjct: 415 RDNDSGRPEKRIKMDLMDVDLPKAPAAAEEKKTADGGLVRG--LQPKRLINLENLVFHQG 472
Query: 435 GLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMT 494
M N LP+GS + T KGYEEIHVP K K +P E+ + ISE+PEWA+ F
Sbjct: 473 NHLMTNPNVKLPQGSTKRTFKGYEEIHVPQPKSKQ-EPGERKVAISELPEWARIGFGDAK 531
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD-GSFNHSNYKI 553
+LNR+Q++ Y SA N+L+CAPTG+GKTNVA+L+IL+++ NRN G ++KI
Sbjct: 532 ELNRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKI 591
Query: 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITR 613
VY++P+KALV E V N RL Y +KV EL+GD+ LT+QQI ETQ+IVTTPEK+D+ITR
Sbjct: 592 VYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITR 651
Query: 614 KSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
K+ + +YT+LV+ RGPV+ESIV+RT+RQ+E T + +R+VGLSATLPNY
Sbjct: 652 KASETSYTKLVRLIIIDEIHLLHDERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNY 711
Query: 674 EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG- 732
DVA FLRV+ KGLF+FD SYRP PL Q++IG+ KKP+++ ++MND+CY KV+ G
Sbjct: 712 RDVASFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPIKQLKIMNDICYNKVIEHVGQ 771
Query: 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791
++Q+LIFVHSRKETAKTA+ +RD ALE +T+G+ LK DS SR IL + V LKD
Sbjct: 772 NRNQMLIFVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRAILAEEAESVNDAALKD 831
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
+LPYGF IHHAG++ DR V+ LF DG +QVLV TATLAWGVNLPAHTVIIKGTQ+Y+P
Sbjct: 832 ILPYGFGIHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSP 891
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSK 911
EKG+W ELSP D++QMLGRAGRPQYD+YGEGIIIT +E++YYLSLMNQQLPIESQ VSK
Sbjct: 892 EKGSWVELSPQDVLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLPIESQLVSK 951
Query: 912 LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL 971
LAD +NAEIVLG ++ E +W+GYTYL++RMLR+P LY + + +D L ++R DL
Sbjct: 952 LADNMNAEIVLGNIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGADYENDD-ALEQKRVDL 1010
Query: 972 VHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031
VH+AA +L++ LVKYD+K+G Q T+LGRIAS+YYI H ++ TYN+HL+P++G+IEL R
Sbjct: 1011 VHSAAVLLEKAGLVKYDKKTGRLQSTELGRIASHYYIGHNSMLTYNQHLQPSIGNIELFR 1070
Query: 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLS 1091
+F+LS+EFKY+ VRQDEK+ELAK+L RVP+PVKE ++EP AKINVLLQAYIS+LKLEGL+
Sbjct: 1071 IFALSDEFKYIPVRQDEKLELAKMLGRVPVPVKEGIDEPHAKINVLLQAYISRLKLEGLA 1130
Query: 1092 LTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIP 1151
L +D+V++TQSAGR+LRALFEI L+RGWA +A+ AL+L KM +RMW +PLRQF P
Sbjct: 1131 LMADLVYVTQSAGRILRALFEICLRRGWASVAKNALDLCKMAERRMWPTMSPLRQFPRCP 1190
Query: 1152 NEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRT 1211
+IL K E+ D W Y+DL P +GEL+ P+ G+T+ V +FP+L + A VQPITR+
Sbjct: 1191 RDILQKSERIDVPWGSYFDLDPPRMGELLGMPRAGKTVCDLVSKFPRLEVQAQVQPITRS 1250
Query: 1212 VLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEED---HSLN 1268
+L+VELTITP+F+WD+++HG + FW++VED DGE IL H+ F+L+K Y E + H +
Sbjct: 1251 MLRVELTITPNFVWDEELHGTAQDFWIMVEDCDGEEILFHDQFVLRKDYAESEMNEHLVE 1310
Query: 1269 FTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALR 1328
FTVPI EP+PP YFI +VSD+W+ S+T + VSF+ LILPE++PP T LLD+Q PV AL+
Sbjct: 1311 FTVPITEPMPPNYFISLVSDRWMHSETRIAVSFQKLILPERFPPHTPLLDMQRAPVKALK 1370
Query: 1329 NPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388
Y+ LY +++FN IQTQ F L+ +DDNV + APTGSGKT+C+E AILR H ++
Sbjct: 1371 RDEYQRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPTGSGKTVCAELAILR-HWAKEDS 1429
Query: 1389 GVMRAVYIAPLEALAKERYRDWEIKF-GQGLGMRVVELTGETAMDLKLLEKGQIIISTPE 1447
G RAVY+AP + L R DW+ + G G + +LTGE DLK+L ++++TP
Sbjct: 1430 G--RAVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAKLTGEMTADLKILAGSDLVLATPT 1487
Query: 1448 KWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507
+WD LSR+W++RK V+ V LF+ DELH++GG GG V EV+VSRM IA Q E+ +RIV L
Sbjct: 1488 QWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGYVYEVVVSRMHSIALQTESGMRIVGL 1547
Query: 1508 STSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567
S L+NA+D+GEWIGA+ H ++NF P RPVPLE+HIQ I +F + M AM +P + +I
Sbjct: 1548 SVPLSNARDIGEWIGASKHTIYNFSPHARPVPLELHIQSFSIPHFPSLMLAMARPAYLSI 1607
Query: 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEM 1627
+Q + +KPAL+FVP+RK R TA+DL+T S+D D+ FL EE++P + + E
Sbjct: 1608 LQLSA-DKPALIFVPNRKQTRATAIDLLTACSIDDDE-DRFLHADIEELQPLLGRVHERT 1665
Query: 1628 LKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
L +L HG+GY HE L++TD+ +VS L+ G I++
Sbjct: 1666 LAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQV 1700
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9U2G0 | U520_CAEEL | 3, ., 6, ., 4, ., 1, 3 | 0.5152 | 0.9741 | 0.7561 | yes | no |
| O75643 | U520_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.5764 | 0.9741 | 0.7593 | yes | no |
| Q9VUV9 | U520_DROME | 3, ., 6, ., 4, ., 1, 3 | 0.5727 | 0.9765 | 0.7591 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1665 | |||
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 0.0 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-130 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 1e-121 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 1e-109 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 3e-55 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 4e-45 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 6e-44 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 1e-43 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-35 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-34 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-31 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 5e-31 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 2e-29 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 5e-27 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-24 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-23 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 2e-21 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-21 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-19 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 1e-17 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 8e-17 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-16 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 3e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-14 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 4e-14 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 3e-12 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 6e-12 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 8e-12 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 4e-11 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 3e-10 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 4e-10 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 4e-10 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-09 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-08 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-08 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-07 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-07 | |
| COG1203 | 733 | COG1203, COG1203, CRISPR-associated helicase Cas3 | 3e-07 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-06 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-06 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 8e-06 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 9e-06 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-05 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 2e-05 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 4e-05 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 7e-05 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 7e-04 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 9e-04 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 0.001 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.001 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.001 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 617 bits (1594), Expect = 0.0
Identities = 259/808 (32%), Positives = 379/808 (46%), Gaps = 56/808 (6%)
Query: 459 EIHVPA--MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILL 516
EI + + + ++++++I + + N Q V K LS N+L+
Sbjct: 1 EIFMKEEKLATSKVKLDDRVLEILKGDGIDE-------LFNPQQEAVEKGLLSDE-NVLI 52
Query: 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTG+GKT +A+L IL + K+VY+ P+KAL E S RL+
Sbjct: 53 SAPTGSGKTLIALLAILS----------TLLEGGGKVVYIVPLKALAEEKYEEFS-RLEE 101
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
++V +GD L +++ +IVTTPEK D +TRK + + V L++IDEIHLL
Sbjct: 102 LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLG 159
Query: 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
D RGPVLESIVAR R E IR+VGLSATLPN E+VA +L L + +
Sbjct: 160 DRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLR 215
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754
R VP ++G KK L+++L E V+ ++A QVL+FVHSRKE KTA+ +R
Sbjct: 216 RGVPYVGAFLGADGKKKTWP-LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
+ + D + IL T + +L +L+ G A HHAG+ R DRQLVED
Sbjct: 275 IKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
F G ++VLVST TLA GVNLPA TVIIK T+ Y+P+ G ++ LD++QM GRAGRP
Sbjct: 335 AFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRP 393
Query: 875 QYDSYGEGIII-TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
YD YGE II+ T H EL Y L Q P SKL D+LN L V + +A +
Sbjct: 394 GYDDYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVS 451
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ T Y R NP YG + +L N + D
Sbjct: 452 WLELTDFYERTFYNPQTYGEGMLREEILASLRYLEE-------------NGLILDADWEA 498
Query: 994 FQVTDLGRIASYYYISHGTISTYNE---HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
T+LG++ S YI + + + L +I L L SL+ + + +R+ E
Sbjct: 499 LHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESS 558
Query: 1051 ELAK--LLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
EL L ++ + E L+E + + N+LLQA + +L +D I + G
Sbjct: 559 ELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPG 618
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERY 1168
L I W L+ L L K + + L + +++E E
Sbjct: 619 DLLRIAETAEW--LSADLLALGKAAERLAKILGLGLHVLR-KLEILSLRIEYG-VRSEEL 674
Query: 1169 YDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDK 1228
+L +R K+ +K + + A + P+T ++ I D
Sbjct: 675 LELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVL 734
Query: 1229 VHGYVEPFWVIVEDNDGEYILHHEYFML 1256
+ G F + V + D Y+LH E +L
Sbjct: 735 LSGRAYFFSIEVRELDLLYVLHEEALIL 762
|
Length = 766 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 406 bits (1046), Expect = e-130
Identities = 162/310 (52%), Positives = 214/310 (69%), Gaps = 7/310 (2%)
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
T+LGRIAS+YYI + T+ T+N LKP +L + S + EF+ + VR++EK EL KLL
Sbjct: 2 TELGRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKLL 61
Query: 1057 DRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
+RVPIPVK +++P AK+N+LLQAY+S+LKL SL SD+ +I Q+AGRLLRALFEI L
Sbjct: 62 ERVPIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIAL 121
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA-WERYYDLSPQ 1174
+GW A AL LSKM+ +R+W +PLRQ IP E+L KLEKK + E DL P+
Sbjct: 122 SKGWLSPALNALELSKMIEQRLWPSDSPLRQLPHIPPEVLKKLEKKGISSLEDLMDLDPE 181
Query: 1175 ELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPITRTV-LKVELTITPDFLWDDKVHGY 1232
ELGEL+ PK G+ + +FV++FP+L + A VQPITR V L+VE+T+T DF WD++ HG
Sbjct: 182 ELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREVSLRVEVTLTRDFEWDERFHGK 241
Query: 1233 VEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPI-YEPLPPQYFIRVVSDKWL 1291
E FW++VED+D +L E F L K+ E H L FTVP+ PLPPQ IR+VSD WL
Sbjct: 242 SEGFWIVVEDSDNNELLAIERFTLNKKKDE--HELEFTVPLSGGPLPPQLTIRLVSDSWL 299
Query: 1292 GSQTVLPVSF 1301
G +PVS
Sbjct: 300 GCDQEVPVSL 309
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 384 bits (988), Expect = e-121
Identities = 139/313 (44%), Positives = 203/313 (64%), Gaps = 4/313 (1%)
Query: 993 YFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052
TDLGRIASYYYIS+ TI T+NE LKP M +L R+ S+S EF + VR +E + L
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 1053 AKLLDRVPIPVK-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111
+L +++PI ++ SL++P K N+LLQA++S+LKL +L SD V++ Q+AGRLL+A+
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD-FAWERYYD 1170
+I L+RGW A ALNLS+M+ + +W +PL Q +P EIL +LEKK + E +
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKKVLSLEDLLE 180
Query: 1171 LSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKV 1229
L +E GEL+ G ++K + + PKL + ++PITRTVL VE+T+T D WDD++
Sbjct: 181 LEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEI 240
Query: 1230 HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
HG E +W+++ D+DG +LH E F L K+ + E+ L+FT P E QY +R+VSD
Sbjct: 241 HGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDS 299
Query: 1290 WLGSQTVLPVSFR 1302
+LG P+SF
Sbjct: 300 YLGCDQEYPLSFD 312
|
Length = 312 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 348 bits (896), Expect = e-109
Identities = 134/313 (42%), Positives = 197/313 (62%), Gaps = 8/313 (2%)
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
T+LGRIASYYYIS+ TI T+N+ LKPT ++ + S + EFK + VR +EK EL +L
Sbjct: 2 TELGRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNELN 61
Query: 1057 DRVPIPVKESLEE-PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
RVPIPVKE + + P AK+N+LLQA++S+L L L SD+ +I Q+A R+LRAL +I L
Sbjct: 62 KRVPIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIAL 121
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGI-PNEILMKLEKKD--FAWERYYDL 1171
+GW + A AL+LS+MV +R+W +PL+Q ++ KLE KD ++E D+
Sbjct: 122 SKGWLRTALNALDLSQMVVQRLWEDSDSPLKQLPHFLIEDVYDKLELKDGSRSFELLLDM 181
Query: 1172 SPQELGELI-RFPKMGRTLHKFVHQFPKLILAAHVQPITRTV-LKVELTITPDFLWDDKV 1229
+ ELGE + R P GR +++ + +FPK+ + A V PITR + L+VEL ITP F WD
Sbjct: 182 NAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVELEITPVFAWDLPR 241
Query: 1230 -HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSD 1288
G E +W++V D+D +L + L+K+ + L+FTVP+ EP P Y + ++SD
Sbjct: 242 HKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKSNEVKLDFTVPLSEPGPENYTVYLISD 301
Query: 1289 KWLGSQTVLPVSF 1301
+LG + S
Sbjct: 302 SYLGCDQEVSFSL 314
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 3e-55
Identities = 112/325 (34%), Positives = 167/325 (51%), Gaps = 18/325 (5%)
Query: 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401
FNP Q V L + D+NVL++APTGSGKT+ + AIL E G + VYI PL+A
Sbjct: 33 FNPQQEAVEKGLLS-DENVLISAPTGSGKTLIALLAILS---TLLEGG-GKVVYIVPLKA 87
Query: 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKY 1461
LA+E+Y ++ + LG+RV TG+ +D + L + +I++TPEK D+L+R+ +
Sbjct: 88 LAEEKYEEFSRL--EELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--W 143
Query: 1462 VQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW 1520
+++V L +IDE+HL+G + GPVLE IV+RMR + IRIV LS +L NA+++ +W
Sbjct: 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADW 199
Query: 1521 IGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALV 1579
+ A + P R VP G D + +++ LV
Sbjct: 200 LNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT-WPLLIDNLALELVLESLAEGGQVLV 258
Query: 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKS-AFLLWPAEEVE-PFIDNIQEEMLKATLRHGVG 1637
FV SRK TA L S L A + P ++E L + GV
Sbjct: 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKI 1662
+ H GL + D+++V F GKIK+
Sbjct: 319 FHHAGLPREDRQLVEDAFRKGKIKV 343
|
Length = 766 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-45
Identities = 125/386 (32%), Positives = 195/386 (50%), Gaps = 55/386 (14%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +N+++ PT AGKT +A I + + K +Y+ P+++L E
Sbjct: 34 LRKGENVIVSVPTAAGKTLIAYSAIYETF-----------LAGLKSIYIVPLRSLAMEKY 82
Query: 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLL 627
LS RL+ ++V+ GD I+ +++ T EK D + D V L+
Sbjct: 83 EELS-RLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLI 139
Query: 628 IIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+ DEIH++ D +RGP LE+ V + R + R++ LSAT+ N ++A +L +L K
Sbjct: 140 VADEIHIIGDEDRGPTLET-VLSSARYV---NPDARILALSATVSNANELAQWLNASLIK 195
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDLCYEKVVAVAGKHQVLIFVH 741
+++RPVPL +GI +K L +R Q+ + ++ V G QVL+FV
Sbjct: 196 ------SNFRPVPLK---LGILYRKRLILDGYERSQVDINSLIKETVNDGG--QVLVFVS 244
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDS---VSREILQSHTDMVKSNDLKDLLPYGFA 798
SRK A L + E + VS E + D L ++LP+G A
Sbjct: 245 SRKNAEDYAE----------MLIQHFPEFNDFKVSSENNNVYDDS-----LNEMLPHGVA 289
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
HHAG++ R+ +E++F + +++V+V+T TLA GVNLPA VI++ Y G
Sbjct: 290 FHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYG--NGGIRY 347
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGII 884
LS ++I QM+GRAGRP YD YG G I
Sbjct: 348 LSNMEIKQMIGRAGRPGYDQYGIGYI 373
|
Length = 674 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 6e-44
Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 63/470 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ KS + N++L PT +GKT VA + ++ +L +G
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL----REGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + ++V +GD T + + + II+ T EK+D
Sbjct: 70 -KAVYLVPLKALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VKL++ DEIHL+ +RG LE I+ + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ-------ILGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIG--IQVKKPLQRFQL-MNDLCY 724
+ N E++A +L L + +RPV L + Y G ++RF L Y
Sbjct: 179 VGNAEELAEWLNAELVV------SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVY 232
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL--KEDSVSREILQSHTD 782
+ AV L+FV++R+ K A + + RFL E +E+ S +
Sbjct: 233 D---AVKKGKGALVFVNTRRSAEKEALEL------AKKIKRFLTKPELRALKELADSLEE 283
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ LK L G A HHAG+ R +R L+ED F +G ++V+ +T TL+ G+NLPA VI
Sbjct: 284 NPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVI 343
Query: 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-- 900
I+ T+ Y+ W ++ L+I QM+GRAGRP+YD GE II+ E LM +
Sbjct: 344 IRDTKRYS--NFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS---KLMERYI 398
Query: 901 ---------QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
L ES F S Q+ A I V N KE N++ T+
Sbjct: 399 FGKPEKLFSMLSNESAFRS----QVLALITNFGVSNFKELVNFLERTFYA 444
|
Length = 720 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-43
Identities = 134/438 (30%), Positives = 212/438 (48%), Gaps = 76/438 (17%)
Query: 478 KISEM--PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
KI+E+ PE + +G+ +L Q+ ++ L N+L PT +GKT +A L +L
Sbjct: 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAML 61
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+ +A K +Y+ P++AL +E R + V+V +GD +
Sbjct: 62 KAIA-----------RGGKALYIVPLRALASEKFEEFE-RFEELGVRVGISTGDYDSRDE 109
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVR 652
+ + IIV T EK D + R + + +++DE+HL+ NRGP LE +A+ R
Sbjct: 110 WLGDNDIIVATSEKVDSLLRNGAP--WLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR 167
Query: 653 QIETTKEHIRLVGLSATLPNYEDVALFLR----------VNLEKGLFY-----FDNSYRP 697
+++V LSAT+ N +++A +L ++L +G+FY FD+S R
Sbjct: 168 LNPD----LQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQRE 223
Query: 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETA----KTARAI 753
V V L+ D + Q L+FV SR+ + A A+
Sbjct: 224 VE---------VPSKDDTLNLVLD-------TLEEGGQCLVFVSSRRNAEGFAKRAASAL 267
Query: 754 RD--TALENDTLGRFLKEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810
+ TA E L ++ EI + S T+ S DL D + G A HHAG++R R+
Sbjct: 268 KKTLTAAERAEL------AELAEEIREVSDTET--SKDLADCVAKGAAFHHAGLSREHRE 319
Query: 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QM 867
LVED F D ++V+ ST TLA G+NLPA VII+ + Y+ G + P+ ++ QM
Sbjct: 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAG----MQPIPVLEYHQM 375
Query: 868 LGRAGRPQYDSYGEGIII 885
GRAGRP D YGE +++
Sbjct: 376 AGRAGRPGLDPYGEAVLL 393
|
Length = 737 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 4e-35
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
+Q++ + LS D +L+ APTG+GKT +L ILQ L + + +
Sbjct: 1 TPIQAQAIPAILSGKD-VLVQAPTGSGKTLAFLLPILQALLP--------KKGGPQALVL 51
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE----ETQIIVTTPEKWDIIT 612
AP + L ++ L ++ ++V L+G +L Q + + I+V TP + +
Sbjct: 52 APTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL 111
Query: 613 RKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R+ G + +KLL++DE H L D G LE I++R +++ LSATLP
Sbjct: 112 RR-GKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSR-------LPPDRQILLLSATLP 163
Query: 672 -NYEDV 676
N ED+
Sbjct: 164 RNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-34
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402
PIQ Q + + +VLV APTGSGKT+ IL+ + G +A+ +AP L
Sbjct: 1 TPIQAQAIPAILS-GKDVLVQAPTGSGKTLAFLLPILQAL--LPKKGGPQALVLAPTREL 57
Query: 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG--QIIISTPEKWDALSRRWKQ 1458
A++ Y + + K + LG+RV LTG T++ + L+KG I++ TP + L RR K
Sbjct: 58 AEQIYEELK-KLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGK- 115
Query: 1459 RKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA-NAKD 1516
K ++ + L ++DE H + G G LE I+SR+ +I+ LS +L N +D
Sbjct: 116 LKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP-------PDRQILLLSATLPRNLED 168
Query: 1517 L 1517
L
Sbjct: 169 L 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-31
Identities = 135/620 (21%), Positives = 232/620 (37%), Gaps = 147/620 (23%)
Query: 279 DQQIDPQQCQKLAEEVLKILAEGDDREVENKL-LYHLQFDKFSLIKF-LLRNRLKVVWCT 336
+Q P + KL IL ++ E+E L Y+L + L + LL R V+
Sbjct: 54 EQLRPPSEVLKLLRSARIILLPANEEEIEEMLKSYNLSAEVARLCRHCLLEGRYTVLTEG 113
Query: 337 RLARAQDQE-----ERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEAR 391
+ +E ++++ E+ G + + LE+ + +
Sbjct: 114 NRIKYGGEEICERCAEEELKRELRFRGNSIGM---------------LEQLERLLHKFR- 157
Query: 392 RLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQR 451
DLD + F +L R
Sbjct: 158 ---------------------------------DLDKVLEMLDPRFDPLEDPEL----TR 180
Query: 452 FTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
+ E V + LD EK ++ + +G+ +L VQ ++ L
Sbjct: 181 YDEVTAETDEVERVPVDELDIPEKFKRMLKR--------EGIEELLPVQVLAVEAGLLEG 232
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
+N+L+ + T +GKT + L + +L L+ K++++ P+ AL + +
Sbjct: 233 ENLLVVSATASGKTLIGELAGIPRL-LSGGK---------KMLFLVPLVALANQKYEDFK 282
Query: 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII--TRKSGD---RTYTQL--V 624
R +KV G ++R + E ++V T DII T + D RT L +
Sbjct: 283 ERYSKLGLKVAIRVG---MSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDI 339
Query: 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
++IDEIH L D RGP L+ ++ R + + + LSAT+ N E++A L
Sbjct: 340 GTVVIDEIHTLEDEERGPRLDGLIGR----LRYLFPGAQFIYLSATVGNPEELAKKLGAK 395
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC---YEKVVAVAGKHQVLIFV 740
L +D RPVPL + + + + +++ ++ L + + + Q ++F
Sbjct: 396 L----VLYDE--RPVPLERHLVFARNES--EKWDIIARLVKREFSTESSKGYRGQTIVFT 447
Query: 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800
+SR+ + L L + PY
Sbjct: 448 YSRRRCHE--------------LADALTGKGLKAA------------------PY----- 470
Query: 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELS 860
HAG+ +R+ VE F + +V+TA LA GV+ PA VI + + W LS
Sbjct: 471 HAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----EW--LS 524
Query: 861 PLDIMQMLGRAGRPQYDSYG 880
+ QMLGRAGRP Y G
Sbjct: 525 VREFQQMLGRAGRPDYHDRG 544
|
Length = 830 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-31
Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 40/336 (11%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + P Q + N+++A PT SGKT+ +E ++ ++ E G +AVY+
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMV--NKLLREGG--KAVYL 74
Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
PL+ALA+E+YR E K + LG+RV TG+ + L K III+T EK+D+L R
Sbjct: 75 VPLKALAEEKYR--EFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH- 131
Query: 1457 KQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
+++ V L + DE+HLIG G LE+I++ M + +I+ LS ++ NA+
Sbjct: 132 -GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM-------LGRAQILGLSATVGNAE 183
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF----EARMQAMTKPTFTAIVQHA 1571
+L EW+ A RPV L +GV F + +++ + +
Sbjct: 184 ELAEWLNAEL-----VVSDWRPVKLR---KGVFYQGFLFWEDGKIERFPNSWESLVYDAV 235
Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE-EVEPFIDNIQE----E 1626
K K ALVFV +R+ A++L + FL P ++ D+++E E
Sbjct: 236 KKGKGALVFVNTRRSAEKEALEL-------AKKIKRFLTKPELRALKELADSLEENPTNE 288
Query: 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKI 1662
LK LR GV + H GL +T++ ++ F G IK+
Sbjct: 289 KLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKV 324
|
Length = 720 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 2e-29
Identities = 92/307 (29%), Positives = 142/307 (46%), Gaps = 34/307 (11%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
NV+V+ PT +GKT+ + AI ++++YI PL +LA E+Y E+ + L
Sbjct: 39 NVIVSVPTAAGKTLIAYSAIYETFLAG-----LKSIYIVPLRSLAMEKYE--ELSRLRSL 91
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
GMRV G+ +++ ++I T EK D+L + V L + DE+H+IG
Sbjct: 92 GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLIVADEIHIIGD 149
Query: 1479 QG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
+ GP LE ++S RY+ RI+ALS +++NA +L +W+ A S NF RP
Sbjct: 150 EDRGPTLETVLSSARYVNPDA----RILALSATVSNANELAQWLNA-SLIKSNF----RP 200
Query: 1538 VPLEIHIQGVD--ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM 1595
VPL++ I I + R Q V LVFV SRK A L+
Sbjct: 201 VPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQ---VLVFVSSRKNAEDYAEMLI 257
Query: 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655
+ D K V +N+ ++ L L HGV + H GL+ + + +F
Sbjct: 258 QHFPEFNDFK----------VSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307
Query: 1656 EAGKIKI 1662
IK+
Sbjct: 308 RNRYIKV 314
|
Length = 674 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 5e-27
Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 48/322 (14%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N+L A PT SGKT+ +E A+L+ + G +A+YI PL ALA E++ ++E +F + L
Sbjct: 41 NLLAAIPTASGKTLIAELAMLK---AIARGG--KALYIVPLRALASEKFEEFE-RFEE-L 93
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR---RWKQRKYVQQVSLFIIDELHL 1475
G+RV TG+ + L II++T EK D+L R W + ++ ++DE+HL
Sbjct: 94 GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPW-----LDDITCVVVDEVHL 148
Query: 1476 IGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNF 1531
I GP LEV ++++R + ++ +VALS ++ NA +L +W+ A S
Sbjct: 149 IDSANRGPTLEVTLAKLRRLNPDLQ----VVALSATIGNADELADWLDAELVDSEW---- 200
Query: 1532 PPGVRPVPLEIHIQGV---DITNFEARMQAM---TKPTFTAIVQHAKNEK-PALVFVPSR 1584
RP+ L +GV +F+ + + +K +V E LVFV SR
Sbjct: 201 ----RPIDLR---EGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSR 253
Query: 1585 K----YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640
+ + + A L + + A L AEE+ D + L + G + H
Sbjct: 254 RNAEGFAKRAASALKKTLTAAERAELAEL---AEEIREVSDTETSKDLADCVAKGAAFHH 310
Query: 1641 EGLNKTDQEVVSALFEAGKIKI 1662
GL++ +E+V F IK+
Sbjct: 311 AGLSREHRELVEDAFRDRLIKV 332
|
Length = 737 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 26/219 (11%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G L Q ++ LS +++L APTG+GKT A+L L+ L
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEAL---------KRGKG 54
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE----ETQIIVTTPE 606
+++ + P + L + L +KV L G + Q + +T I+VTTP
Sbjct: 55 GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPG 114
Query: 607 KWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVG 665
+ + D+ V L+I+DE H L D G LE ++ ++++L+
Sbjct: 115 RLLDLLEN--DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKL-------LPKNVQLLL 165
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
LSAT P + L L +N + D + P+ +Q+
Sbjct: 166 LSATPPEEIENLLELFLN---DPVFIDVGFTPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-23
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 18/206 (8%)
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
GF+ P Q + L + +V++AAPTGSGKT+ + L + R + +
Sbjct: 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPAL---EALKRGKGGRVLVLV 61
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGET-AMDLKLLEKG--QIIISTPEKWDALSR 1454
P LA++ + + V G++ L+ LE G I+++TP + L
Sbjct: 62 PTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
K + V L I+DE H + G G LE ++ + ++++ LS +
Sbjct: 122 NDK--LSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP-------KNVQLLLLSATPPE 172
Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVP 1539
+ + + G P+
Sbjct: 173 EIENLLELFL--NDPVFIDVGFTPLE 196
|
Length = 201 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-21
Identities = 104/430 (24%), Positives = 176/430 (40%), Gaps = 95/430 (22%)
Query: 480 SEMPEWAQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
+ + + FK T L Q + S +N+L+ APTG+GKT A L ++ +L
Sbjct: 6 NILDPRVREWFKRKFTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELL- 63
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN--RLQMYDVKVRELSGD--QTLTRQQ 594
+ +Y++P+KAL ++ L R +V VR GD Q+ ++
Sbjct: 64 --SLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVR--HGDTPQSEKQKM 119
Query: 595 IEETQ-IIVTTPEKWDII-TRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTV 651
++ I++TTPE I+ V+ +I+DEIH L ++ RG L + R +
Sbjct: 120 LKNPPHILITTPESLAILLNSPKFRELLRD-VRYVIVDEIHALAESKRGVQLALSLER-L 177
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQY-IGIQ 708
R++ + R +GLSAT+ E+VA FL F + V +++ I +
Sbjct: 178 REL--AGDFQR-IGLSATVGPPEEVAKFLVG--------FGDPCEIVDVSAAKKLEIKVI 226
Query: 709 VKKP-LQRFQLMNDLCYEKVVAVAGKHQ-VLIFVHSRKETAKTARAIRDTALENDTLGRF 766
L + + YE++ + KH+ LIF ++ R
Sbjct: 227 SPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNT----------------------RS 264
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
E R LK L P +HH ++R R VE+ +G ++ +V+
Sbjct: 265 GAERLAFR--------------LKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVA 310
Query: 827 TATLAWG-----VNLPAHTVIIKGTQIYNPEKGAWTELSPLDI---MQMLGRAGRPQYDS 878
T++L G ++L VI Q+ SP + +Q +GRAG +
Sbjct: 311 TSSLELGIDIGDIDL----VI----QL----------GSPKSVNRFLQRIGRAGH-RLGE 351
Query: 879 YGEGIIITGH 888
+GIII
Sbjct: 352 VSKGIIIAED 361
|
Length = 814 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
++LL APTG+GKT A+L IL+ L + +++ +AP + L +V L
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELL---------DSLKGGQVLVLAPTRELANQVAERLKE 52
Query: 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLII 629
+KV L G ++ +Q +T I+V TP + + + + + LLI+
Sbjct: 53 LFG-EGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER--LKLSLKKLDLLIL 109
Query: 630 DEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
DE H L + ++ + + +++ LSAT
Sbjct: 110 DEAHRLLNQ------GFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-19
Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 42/279 (15%)
Query: 1326 ALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT------ICSEFAIL 1379
L + E + F P Q +++ +NVL+ APTGSGKT + +E +L
Sbjct: 7 ILDPRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINE--LL 63
Query: 1380 RNHQKASETGVMRAVYIAPLEALAK---ERYRDWEIKFGQGLGMRVVELTGET--AMDLK 1434
+ E G+ A+YI+PL+AL R + + LG+ V G+T + K
Sbjct: 64 SLGKGKLEDGI-YALYISPLKALNNDIRRRLEEP----LRELGIEVAVRHGDTPQSEKQK 118
Query: 1435 LLEKGQ-IIISTPEK------WDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEV 1486
+L+ I+I+TPE + +YV I+DE+H L + G L +
Sbjct: 119 MLKNPPHILITTPESLAILLNSPKFRELLRDVRYV------IVDEIHALAESKRGVQLAL 172
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQ 1545
+ R+R +A RI LS ++ +++ +++ G + + +++
Sbjct: 173 SLERLRELAGDF---QRI-GLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR 1584
D+ E A+ + I + K + L+F +R
Sbjct: 229 VEDLIYDEELWAALYE----RIAELVKKHRTTLIFTNTR 263
|
Length = 814 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-17
Identities = 71/353 (20%), Positives = 107/353 (30%), Gaps = 44/353 (12%)
Query: 1280 QYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGF 1339
+Y D ++L I +AL E LY
Sbjct: 19 EYLEDEFKDAEGQEGSILRD---PEIEARPGKTSEFPELRDESLKSALVKAGIERLY--- 72
Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
H Q ++ NV+V TGSGKT IL RA+ + P
Sbjct: 73 SH----QVDALRLIRE-GRNVVVTTGTGSGKTESFLLPIL---DHLLRDPSARALLLYPT 124
Query: 1400 EALA---KERYRDWEIKFGQGLGMRVVELTGET---AMDLKLLEKGQIIISTPEKWDALS 1453
ALA ER R+ + TG+T + I+++ P+ L
Sbjct: 125 NALANDQAERLRELISDLPGKVTFGR--YTGDTPPEERRAIIRNPPDILLTNPDMLHYLL 182
Query: 1454 RRWKQRKYVQ--QVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510
R + ++DELH G QG V + + R+ + + ++I+ S +
Sbjct: 183 LRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL-LRRLLRRLRRYGSPLQIICTSAT 241
Query: 1511 LANAKDLGEWIGATSHGLFNFPPGV------RPVPLEIHIQGVDITNFEARMQAMTKPTF 1564
LAN + E LF V P L ++ A +
Sbjct: 242 LANPGEFAE-------ELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294
Query: 1565 TAIV---QHAKNEKPALVFVPSRKYV-RLTAVDLMTYSSMDGDQKSAFLLWPA 1613
A + + LVF SRK V L G A + A
Sbjct: 295 LATLAALLVRNGIQT-LVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA 346
|
Length = 851 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 8e-17
Identities = 91/374 (24%), Positives = 150/374 (40%), Gaps = 102/374 (27%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413
++VLV APT SGKT+ +E+AI LR+ Q R +Y +P++AL+ ++YRD K
Sbjct: 134 GESVLVCAPTSSGKTVVAEYAIALALRDGQ--------RVIYTSPIKALSNQKYRDLLAK 185
Query: 1414 FG---QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WKQRKYVQQVSL 1467
FG +G+ +TG+ +++ ++ T E + R ++ +
Sbjct: 186 FGDVADMVGL----MTGDVSIN----PDAPCLVMTTEILRNMLYRGSES-----LRDIEW 232
Query: 1468 FIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH 1526
+ DE+H IG + G V E ++ + + +R V LS ++ NA++ EWI
Sbjct: 233 VVFDEVHYIGDRERGVVWEEVI-------ILLPDHVRFVFLSATVPNAEEFAEWIQRVHS 285
Query: 1527 GLFNFPPGV----RPVPLEIHI-------QGVD------ITNFEA--------------- 1554
+ V RPVPLE + VD NF +
Sbjct: 286 QPIHV---VSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342
Query: 1555 ---------------RMQAMTKPTFTAIVQHAKNEK--PALVFVPSRKYVRLTAVDLMTY 1597
R A IV + PA+VF SR+ A L T
Sbjct: 343 DDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTL 402
Query: 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEE---------MLKATLRHGVGYLHEGLNKTDQ 1648
+ ++K + E ++ I ++ EE + A L G+ H GL +
Sbjct: 403 DLVLTEEKERAI---REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459
Query: 1649 EVVSALFEAGKIKI 1662
E+V LF+ G +K+
Sbjct: 460 ELVEELFQEGLVKV 473
|
Length = 1041 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
+VL+AAPTGSGKT+ + IL + + + +AP LA + +K G
Sbjct: 2 DVLLAAPTGSGKTLAALLPIL---ELLDSLKGGQVLVLAPTRELANQVAE--RLKELFGE 56
Query: 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475
G++V L G T++ L K I++ TP + R K ++++ L I+DE H
Sbjct: 57 GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHR 114
Query: 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
+ QG + I ++ +++ LS
Sbjct: 115 LLNQGFGL------LGLKILLKLPKDRQVLLLS 141
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 3e-15
Identities = 95/390 (24%), Positives = 150/390 (38%), Gaps = 105/390 (26%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
LL APTG+GKT L L LA +Y+ P++AL ++ NL +
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEK-----PKKGLHTLYITPLRALAVDIARNLQAPI 86
Query: 575 Q--MYDVKVRELSGDQTLTRQQIEET---QIIVTTPEKWDI-ITRKSGDRTYTQLVKLLI 628
+ ++V +GD + + + + I++TTPE + ++ R + L + ++
Sbjct: 87 EELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDL-RCVV 145
Query: 629 IDEIH-LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
+DE H L RG LE +AR + +R GLSAT+ N E+ L
Sbjct: 146 VDEWHELAGSKRGDQLELALAR----LRRLAPGLRRWGLSATIGNLEEARRVL------- 194
Query: 688 LFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETA 747
+ V G VL+
Sbjct: 195 ----------------------------------------LGVGGAPAVLV-------RG 207
Query: 748 KTARAIRDTALENDTLGRF-------LKE-DSVSREILQSHTDMVKSN----------DL 789
K +AI +L ++ RF L+ V EI Q+ T +V +N L
Sbjct: 208 KLPKAIPVISLLPESEERFPWAGHLGLRALPEVYAEIDQARTTLVFTNTRSQAELWFQAL 267
Query: 790 KDLLPYGF---AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN-LPAHTVIIKG 845
+ P A+HH + R R+ VE G ++ +V T++L GV+ P VI
Sbjct: 268 WEANPEFALPIALHHGSLDREQRRWVEAAMAAGRLRAVVCTSSLDLGVDFGPVDLVI--- 324
Query: 846 TQIYNPEKGAWTELSPLDIMQMLGRAG-RP 874
QI +P KG + L +Q GR+ RP
Sbjct: 325 -QIGSP-KGV----ARL--LQRAGRSNHRP 346
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-14
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNP 851
L A H G+++ +R+ + D F +G ++VLV+T G++LP VII
Sbjct: 10 LGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD------ 63
Query: 852 EKGAWTELSPLDIMQMLGRAGRP 874
SP +Q +GRAGR
Sbjct: 64 -----LPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-14
Identities = 101/468 (21%), Positives = 169/468 (36%), Gaps = 85/468 (18%)
Query: 480 SEMPEWAQPAFK------GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
SE PE + K G+ +L Q + + N+++ TG+GKT +L IL
Sbjct: 49 SEFPELRDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPIL 107
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS--NRLQMYDVKVRELSGD--QT 589
L + + + + + P AL + L V +GD
Sbjct: 108 DHLLRDPSA---------RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPE 158
Query: 590 LTRQQIEE-TQIIVTTPEKWDIITRKSGDRT---YTQLVKLLIIDEIHLLHDNRGPVLES 645
R I I++T P+ + ++ D L K L++DE LH RG V S
Sbjct: 159 ERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNL-KYLVVDE---LHTYRG-VQGS 213
Query: 646 IVA----RTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPL 700
VA R +R++ ++++ SATL N E + E D P L
Sbjct: 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE---VPVDEDGSPRGL 270
Query: 701 SQQYI---GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTA 757
I+ R + +L + V Q L+F SRK+ + R
Sbjct: 271 RYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPR--- 327
Query: 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
R ++E ++L + + + AG+ R +R+ +E F
Sbjct: 328 ------RRLVRE---GGKLLDAVS-----------------TYRAGLHREERRRIEAEFK 361
Query: 818 DGHVQVLVSTATLAWGVNLPA-HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
+G + +++T L G+++ + VI G P L Q GRAGR
Sbjct: 362 EGELLGVIATNALELGIDIGSLDAVIAYG----YPGVSV------LSFRQRAGRAGRRGQ 411
Query: 877 DSYGEGIIITGHSE--LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
+S +++ S+ YYL + L V + N E +L
Sbjct: 412 ESL---VLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDNNEYLL 456
|
Length = 851 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-12
Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 28/242 (11%)
Query: 1314 TELLDLQPLPVTALRNP--LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGK 1370
E +++ +PV L P L + G + P+Q +N+LV + T SGK
Sbjct: 186 AETDEVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGK 245
Query: 1371 TICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG--- 1427
T+ E A + + + +++ PL ALA ++Y D++ ++ + LG++V G
Sbjct: 246 TLIGELAGIPRLLSGGK----KMLFLVPLVALANQKYEDFKERYSK-LGLKVAIRVGMSR 300
Query: 1428 ----ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG-GQGGP 1482
E + + II+ T E D L R K + V +IDE+H + + GP
Sbjct: 301 IKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTV---VIDEIHTLEDEERGP 357
Query: 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI 1542
L+ ++ R+RY+ + + LS ++ N ++L + +GA L++ RPVPLE
Sbjct: 358 RLDGLIGRLRYLFPGAQ----FIYLSATVGNPEELAKKLGAKLV-LYD----ERPVPLER 408
Query: 1543 HI 1544
H+
Sbjct: 409 HL 410
|
Length = 830 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 54/175 (30%)
Query: 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758
P+ Q + ++ +K +L+ + + +VLIF S+K
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEH-------LKKGGKVLIFCPSKKML------------ 41
Query: 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
D L L++ + A H ++ +R+ V F +
Sbjct: 42 --DELAELLRKPGIK-----------------------VAALHGDGSQEEREEVLKDFRE 76
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
G + VLV+T +A G++LP +V+I Y+ SP +Q +GRAGR
Sbjct: 77 GEIVVLVATDVIARGIDLPNVSVVI----NYDLPW------SPSSYLQRIGRAGR 121
|
Length = 131 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-12
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G A+HHAG+ ++LVE+LF +G V+V+ +T T A G+N+PA TV+ ++
Sbjct: 442 LLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDG 501
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
W LSP + QM GRAGR D G I+I
Sbjct: 502 NGHRW--LSPGEYTQMSGRAGRRGLDVLGTVIVI 533
|
Length = 1041 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-11
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 21/184 (11%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N+L+ +PTG+GKT A L I+ +L +G Y +YV+P++AL ++ NL
Sbjct: 49 NVLISSPTGSGKTLAAFLAIIDEL-FRLGREGELEDKVY-CLYVSPLRALNNDIHRNLEE 106
Query: 573 RLQ------------MYDVKVRELSGDQTLTRQQ--IEET-QIIVTTPEKWDIITRKSGD 617
L + +++V +GD + +Q +++ I++TTPE I+
Sbjct: 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKF 166
Query: 618 RTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
R + VK +I+DEIH L +N RG L + R + ++ E +R +GLSAT+ E+V
Sbjct: 167 REKLRTVKWVIVDEIHSLAENKRGVHLSLSLER-LEEL-AGGEFVR-IGLSATIEPLEEV 223
Query: 677 ALFL 680
A FL
Sbjct: 224 AKFL 227
|
Length = 876 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-10
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
+ VP + E+ + Q A + L +++L+C
Sbjct: 96 DYDMVPDAESPFDLAPPAREYPFELDPFQQEAI---------------AILERGESVLVC 140
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577
APT +GKT VA I LAL +++Y +P+KAL + +L +
Sbjct: 141 APTSSGKTVVAEYAI--ALALRDGQ---------RVIYTSPIKALSNQKYRDLLAKFGDV 189
Query: 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL--LIIDEIHLL 635
V ++GD ++ + +V T E I R R L + ++ DE+H +
Sbjct: 190 ADMVGLMTGDVSIN----PDAPCLVMTTE----ILRNMLYRGSESLRDIEWVVFDEVHYI 241
Query: 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
D RG V E ++ I H+R V LSAT+PN E+ A +++ + + ++
Sbjct: 242 GDRERGVVWEEVI------ILLPD-HVRFVFLSATVPNAEEFAEWIQ-RVHSQPIHVVST 293
Query: 695 -YRPVPLSQQYI 705
+RPVPL + ++
Sbjct: 294 EHRPVPL-EHFV 304
|
Length = 1041 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 4e-10
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 1361 LVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWE-IKFGQGL 1418
L+ APTGSGKT+ L + +YI PL ALA + R+ + GL
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALAVDIARNLQAPIEELGL 91
Query: 1419 GMRVVELTGETAMDLKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH- 1474
+RV TG+T+ + ++ I+++TPE L + + + ++DE H
Sbjct: 92 PIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDLRCVVVDEWHE 151
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
L G + G LE+ ++R+R +A + R LS ++ N ++ +
Sbjct: 152 LAGSKRGDQLELALARLRRLAPGL----RRWGLSATIGNLEEARRVLL 195
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-10
Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 114/418 (27%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVAPMKALVAEVVGNLSNRLQ 575
APTG+GKT A L L +L +D H +I+Y++P+KAL +V NL L+
Sbjct: 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62
Query: 576 -MYDVKVRE-----------LSGDQT------LTRQQIEETQIIVTTPEK-WDIITRKSG 616
+ D + R +GD LTR I++TTPE + ++T ++
Sbjct: 63 GIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN---PPDILITTPESLYLMLTSRA- 118
Query: 617 DRTYTQLVKLLIIDEIHLLH-DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
R + V+ +IIDE+H + RG L + R + T+ + I GLSAT+ + D
Sbjct: 119 -RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRI---GLSATVRSASD 174
Query: 676 VALFLRVNLEKGLFYFDNSYRPV----PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731
VA FL RPV P + ++ I++ P+ M+D V +VA
Sbjct: 175 VAAFL------------GGDRPVTVVNPPAMRHPQIRIVVPVAN---MDD-----VSSVA 214
Query: 732 GKH----------------------QVL------IFVHSR----KETAK-----TARAIR 754
+VL +F +SR K TA+ AR R
Sbjct: 215 SGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR 274
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
++ D + S + S + +S HH +++ R + E
Sbjct: 275 SPSIAVDAAHFESTSGATSNRVQSSDVFIARS-------------HHGSVSKEQRAITEQ 321
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872
G ++ +V+T++L G+++ A ++I Q+ P LS +Q +GRAG
Sbjct: 322 ALKSGELRCVVATSSLELGIDMGAVDLVI---QVATP-------LSVASGLQRIGRAG 369
|
Length = 1490 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-09
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPEK 853
A H G+++ +R+ + + F +G +VLV+T G++LP + VI Y+
Sbjct: 8 IKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVI-----NYDLPW 62
Query: 854 GAWTELSPLDIMQMLGRAGR 873
+P +Q +GRAGR
Sbjct: 63 ------NPASYIQRIGRAGR 76
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388
L +Y GF+ PIQ + L + D V+ A TGSGKT IL + +
Sbjct: 9 ELLRGIYALGFEKPTPIQARAIPPLLSGRD-VIGQAQTGSGKTAAFLIPILEKLDPSPKK 67
Query: 1389 GVMRAVYIAPLEALA---KERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QII 1442
+A+ +AP LA E R K G+ ++VV + G T++ ++ L++G I+
Sbjct: 68 DGPQALILAPTRELALQIAEVAR----KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIV 123
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472
++TP + L R K + +V ++DE
Sbjct: 124 VATPGRLLDLLERGKLD--LSKVKYLVLDE 151
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-08
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L +AL GF+ PIQ ++ D VL A TG+GKT +L+ K+
Sbjct: 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKS 94
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLEKG-QI 1441
E + A+ +AP LA + + K G+ L G+RV + G ++ ++ L++G I
Sbjct: 95 VERKYVSALILAPTRELAVQIAEE-LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDI 153
Query: 1442 IISTP 1446
+++TP
Sbjct: 154 VVATP 158
|
Length = 513 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-07
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMR----AV 1394
F F P Q L + NVL+++PTGSGKT+ + AI+ + G + +
Sbjct: 30 FGTFTPPQRYAI-PLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCL 88
Query: 1395 YIAPLEALAKERYRDWEI----------KFGQGL-GMRVVELTGETAMD--LKLLEKG-Q 1440
Y++PL AL + +R+ E + G+ L +RV TG+T+ K+L+K
Sbjct: 89 YVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPH 148
Query: 1441 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVE 1499
I+I+TPE L K R+ ++ V I+DE+H L + G L + + R+ +A
Sbjct: 149 ILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG--G 206
Query: 1500 NKIRI 1504
+RI
Sbjct: 207 EFVRI 211
|
Length = 876 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 89/490 (18%), Positives = 171/490 (34%), Gaps = 101/490 (20%)
Query: 453 TNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
K + + + K L E + F+ T +Q L+
Sbjct: 11 KLKSAHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTP---IQLAAIPLILAGR 67
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
D +L A TG GKT +L +LQ++ ++ +AP + L ++ L
Sbjct: 68 D-VLGQAQTGTGKTAAFLLPLLQKI-----LKSVERKYVSALI-LAPTRELAVQIAEELR 120
Query: 572 NRLQ-MYDVKVRELSGDQTLTRQ--QIEET-QIIVTTPEK-WDIITRKSGDRTYTQLVKL 626
+ + ++V + G ++ +Q ++ I+V TP + D+I R D V+
Sbjct: 121 KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLD---LSGVET 177
Query: 627 LIIDEIHLLHD---NRG--PVLESIVARTVRQIETTKEHIRLVGL-SATLPNYEDVALFL 680
L++DE D + G +E I+ R L SAT+P +D+
Sbjct: 178 LVLDEA----DRMLDMGFIDDIEKILKAL--------PPDRQTLLFSATMP--DDIRELA 223
Query: 681 RVNLEKGLFY---FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737
R L + + R + +Q+ ++V+ ++ +L+ L + +V+
Sbjct: 224 RRYLNDPVEIEVSVEKLERTLKKIKQFY-LEVESEEEKLELLLKLL-----KDEDEGRVI 277
Query: 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797
+FV +++ + A L++ L
Sbjct: 278 VFVRTKRLVEELA--------------ESLRKRGFKVAAL-------------------- 303
Query: 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H + + +R + F DG ++VLV+T A G+++P + +I Y+
Sbjct: 304 ---HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL------ 350
Query: 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE----LRYYLSLMNQQLPIESQFVSKLA 913
L P D + +GR GR G I E L+ + ++LP
Sbjct: 351 PLDPEDYVHRIGRTGR--AGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408
Query: 914 DQLNAEIVLG 923
+
Sbjct: 409 EDAKLLKTTR 418
|
Length = 513 |
| >gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-07
Identities = 77/461 (16%), Positives = 154/461 (33%), Gaps = 105/461 (22%)
Query: 441 RKCDLPEGSQRFTNKGYEEIHVPAM--KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
K D+ + E + + + K E +L
Sbjct: 151 EKMDIKDTRNFTELAKQEARLLKPLLLLLSAIARINKFKSFIE---------HEGYELQE 201
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+ + ++L APTG GKT +++ L L +++YV P
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKS-------RVIYVLP 254
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSG--DQTLTRQQIEETQIIVTTPEKWDIITRK-S 615
+ ++ ++ ++ V + L + L + ++ + +TT + + +
Sbjct: 255 FRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALI 314
Query: 616 GDRTYTQLVK----------------LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659
L+ L+I+DE+HL D + + + + +
Sbjct: 315 VVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETML---AALLALLEALA--EA 369
Query: 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQVKKPLQRFQ 717
+ ++ +SATLP + L + + + P ++ + V+ +
Sbjct: 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED--GPQE 427
Query: 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777
+ +L E+V GK +VL+ V++ RAI L LKE
Sbjct: 428 ELIELISEEV--KEGK-KVLVIVNTVD------RAIE--------LYEKLKEK------- 463
Query: 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLFGDGHVQVLVSTATLAWG 833
LL H+ T DR+ ++ LF ++V+T + G
Sbjct: 464 ---------GPKVLLL-------HSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLD-IMQMLGRAGR 873
V++ +I TEL+P+D ++Q GR R
Sbjct: 508 VDIDFDVLI--------------TELAPIDSLIQRAGRVNR 534
|
Length = 733 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + AL N L+ PTG GKT +A + I +L R G K++++AP
Sbjct: 20 QLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRL---RWFGG-------KVLFLAPT 67
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQIEET-QIIVTTPE--KWDIIT-RK 614
K LV + + + ++ L+G+ + R+++ ++ V TP+ + D+ R
Sbjct: 68 KPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRI 127
Query: 615 SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
D V LLI DE H R V ++ + ++ ++GL+A+
Sbjct: 128 DLDD-----VSLLIFDEAH-----RA-VGNYAYVFVAKEYLRSAKNPLILGLTAS 171
|
Length = 542 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-06
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 25/146 (17%)
Query: 497 NRVQSRVY-----KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
N +++R+Y +AL N L+ PTG GKT +A+L I ++L G
Sbjct: 12 NTIEARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLH---KKGG------- 59
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQI-EETQIIVTTPE--K 607
K++ +AP K LV + L + + K+ +G+ R ++ E+ ++IV TP+ +
Sbjct: 60 KVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIE 119
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIH 633
D+I R + V LLI DE H
Sbjct: 120 NDLIAG----RISLEDVSLLIFDEAH 141
|
Length = 773 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 8e-06
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 1362 VAAPTGSGKTICS-EFAILR-------NHQKASETGVMRAVYIAPLEAL----------- 1402
V APTGSGKT+ + +A+ R + ++A + R +YI+P++AL
Sbjct: 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIP 60
Query: 1403 ----AKERYRDWEIKFGQGLGMRVVELTGET--AMDLKLLEK-GQIIISTPEKWDALSRR 1455
A ER R E + +G+R TG+T KL I+I+TPE L
Sbjct: 61 LKGIADERRRRGETEVNLRVGIR----TGDTPAQERSKLTRNPPDILITTPESL-YLMLT 115
Query: 1456 WKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514
+ R+ ++ V IIDE+H + G + G L + + R+ + +I LS ++ +A
Sbjct: 116 SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRI---GLSATVRSA 172
Query: 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554
D+ ++G PP +R + I + ++ + +
Sbjct: 173 SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSS 212
|
Length = 1490 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-06
Identities = 73/403 (18%), Positives = 122/403 (30%), Gaps = 116/403 (28%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV---------- 563
+++ APTG GKT A+L AL+ + +++ P +A +
Sbjct: 2 LVIEAPTGYGKTEAALL-----WALHSLKSQKAD----RVIIALPTRATINAMYRRAKEA 52
Query: 564 --AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE-----TQIIVTTPEKWDI-ITRKS 615
+ + S + I V T ++ + +
Sbjct: 53 FGETGLYHSSILSSRIKEMGDSEEFEHLFPLYIHSNDTLFLDPITVCTIDQVLKSVFGEF 112
Query: 616 GDRTYTQL---VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG-----LS 667
G +T LLI DE+H + T+ I E ++ +S
Sbjct: 113 GHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLMS 161
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
ATLP FL+ EK + +N P + + + L
Sbjct: 162 ATLPK------FLKEYAEKIGYVEENEPLDLKPNERAPFIKIESDKVGEISSLERL---- 211
Query: 727 VVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786
+ + V I V+ T A+ LKE EI+
Sbjct: 212 LEFIKKGGSVAIIVN----TVDRAQEFYQQ----------LKEKGPEEEIM--------- 248
Query: 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDL----FGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ H+ T DR E F V+V+T + +++ +I
Sbjct: 249 ------------LIHSRFTEKDRAKKEAELLLEFKKSEKFVIVATQVIEASLDISVDVMI 296
Query: 843 IKGTQIYNPEKGAWTELSPLD-IMQMLGRAGRPQYDSYGEGII 884
TEL+P+D ++Q LGR R YGE
Sbjct: 297 --------------TELAPIDSLIQRLGRLHR-----YGEKNG 320
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 11/192 (5%)
Query: 69 EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSG 128
EE+ KK KK + E + E++ + + L G +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEE---IKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 129 AADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDA-----A 183
+I A K K +K L + + K D D +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELD---SSKKAEKKNALDKDDDLNYVKDIDV 126
Query: 184 GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGG 243
N A + +D DDD + +++DDDE++ + D + D+E+EE
Sbjct: 127 LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Query: 244 GIDDDDESGDAN 255
+ D+D+S
Sbjct: 187 FVWDEDDSEALR 198
|
Length = 509 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 75/408 (18%), Positives = 131/408 (32%), Gaps = 122/408 (29%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP-----------MKAL 562
+++ APTG GKT A+L AL+ + +++ P K L
Sbjct: 2 LVIEAPTGYGKTEAALL-----WALHSIKSQKAD----RVIIALPTRATINAMYRRAKEL 52
Query: 563 VAEVVGNLSNRLQMYDVKVRELSGD----QTLTRQQIEE---TQIIVTTPEKWDI-ITRK 614
+G L + +K S + L ++ I V T ++ + +
Sbjct: 53 FGSNLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGE 112
Query: 615 SGDRTYTQLV---KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG-----L 666
G +T LLI DE+H + T+ I E ++ +
Sbjct: 113 FGHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLM 161
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNS---YRPVPLSQQY-IGIQVKKPLQRFQLMNDL 722
SATLP FL+ EK + N + +++ + + L
Sbjct: 162 SATLPK------FLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERL 215
Query: 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ + ++ I V+ T A+ EN
Sbjct: 216 ----LEFIKKGGKIAIIVN----TVDRAQEFYQQLKENA--------------------- 246
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDR-----QLVEDLFGDGHVQVLVSTATLAWGVNLP 837
+ LL H+ T DR +L+E+ V+V+T + +++
Sbjct: 247 ---PEEEIMLL-------HSRFTEKDRAKKEAELLEE-MKKNEKFVIVATQVIEASLDIS 295
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLD-IMQMLGRAGRPQYDSYGEGII 884
A +I TEL+P+D ++Q LGR R YG
Sbjct: 296 ADVMI--------------TELAPIDSLIQRLGRLHR-----YGRKNG 324
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-05
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
N LV PTG GKT + I R H+K + + +AP + L ++ + KF
Sbjct: 29 KKNTLVVLPTGLGKTAIALLVIAERLHKKGG-----KVLILAPTKPLVEQHAEFFR-KFL 82
Query: 1416 QGLGMRVVELTGETAMD--LKLLEKGQIIISTPE--KWDALSRRWKQRKYVQQVSLFIID 1471
++V TGE + + +L EK ++I++TP+ + D ++ R ++ VSL I D
Sbjct: 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRIS----LEDVSLLIFD 138
Query: 1472 ELH 1474
E H
Sbjct: 139 EAH 141
|
Length = 773 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 33/192 (17%)
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
F+ T +Q+R LS D ++ A TG+GKT ++ IL++L + DG
Sbjct: 19 FEKPTP---IQARAIPPLLSGRD-VIGQAQTGSGKTAAFLIPILEKLDPSPKKDG----- 69
Query: 550 NYKIVYVAPMKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE----TQIIV 602
+ + +AP + L +AEV L + ++KV + G ++ +QI + I+V
Sbjct: 70 -PQALILAPTRELALQIAEVARKLG---KHTNLKVVVIYGGTSI-DKQIRKLKRGPHIVV 124
Query: 603 TTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI-ETTKEH 660
TP + D++ R D VK L++DE + L+ +R+I + +
Sbjct: 125 ATPGRLLDLLERGKLD---LSKVKYLVLDEADRM-------LDMGFEDQIREILKLLPKD 174
Query: 661 IRLVGLSATLPN 672
+ + SAT+P
Sbjct: 175 RQTLLFSATMPK 186
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 176 YQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMV--------QEEDEEEE 227
+ + A G + DDD E+E +D++ + + + + + D E+E
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Query: 228 EDVAEPNASGAMQMGGGIDDDDESGDANEGMSLN 261
E+ E + ++DE A E +
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEA 169
|
This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317 |
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 9e-04
Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 67/255 (26%)
Query: 59 RAFRGRPPELEEKLKKS------------AKKKKERDPDADAAAASEGTYQPKTKETRAA 106
RA R R PEL + L A + D D A AA G ++ +A
Sbjct: 51 RANRARLPELPKHLTDKEIALTRGLGDSMALRLACHDADCHAVAAPIG------QDAQAI 104
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDA------VKNPDKKKEI------EKL 154
++A+ + +G + V+ +L + A K +E EKL
Sbjct: 105 FDAVEQARVEAIGAAAMPGVAKNLSAMLEEKYDKANFSKRTDKEDAPLEEAVALLVREKL 164
Query: 155 LNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDD-------------DMGVA 201
P +++ + + + D AG D ++DD M +A
Sbjct: 165 TGDAPPDSAGKVLDLWR-----DEIEDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMA 219
Query: 202 VEF-----------EENDDDEEESDLDMVQEEDEEEEEDVAEPN----ASGAMQMG---- 242
E E+ DDD+ +++ D +E E D +E + G + G
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279
Query: 243 GGIDDDDESGDANEG 257
+D ES +++E
Sbjct: 280 AEASEDSESDESDED 294
|
Length = 620 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N LV PTG GKT + I + +++AP + L + +
Sbjct: 29 FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGK----VLFLAPTKPLVLQHAE----FCRK 80
Query: 1417 GLGM---RVVELTGETAMD--LKLLEKGQIIISTPE--KWDALSRRWKQRKYVQQVSLFI 1469
G+ + LTGE + +L K ++ ++TP+ + D + R VSL I
Sbjct: 81 VTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDD----VSLLI 136
Query: 1470 IDELH 1474
DE H
Sbjct: 137 FDEAH 141
|
Length = 542 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 34/173 (19%)
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ ++ PTGAGKT VA + +L + + P K L+
Sbjct: 49 VKNRRTERRGVIVLPTGAGKTVVA-AEAIAEL-------------KRSTLVLVPTKELLD 94
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL- 623
+ L L + D ++ G +++E ++ V T + R+ +
Sbjct: 95 QWAEALKKFLLLND-EIGIYGGG----EKELEPAKVTVAT---VQTLARRQLLDEFLGNE 146
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
L+I DE+H L R + +E +GL+AT ED
Sbjct: 147 FGLIIFDEVHHLPAP--------SYRRI--LELLSAAYPRLGLTATPE-REDG 188
|
Length = 442 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+ ++ PTG+GKT+ + AI + + + P + L + +
Sbjct: 54 TERRGVIVLPTGAGKTVVAAEAI----AELKR----STLVLVPTKELLDQWAEALKKFL- 104
Query: 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ-QVSLFIIDELH 1474
L + G K LE ++ ++T L+RR +++ + L I DE+H
Sbjct: 105 -LLNDEIGIYGGGE----KELEPAKVTVAT---VQTLARRQLLDEFLGNEFGLIIFDEVH 156
Query: 1475 LIG 1477
+
Sbjct: 157 HLP 159
|
Length = 442 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 775 EILQSHTDMVKSNDLKDLLP-YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E L LK P Y + H M +++ V + F +G V +LV+T + G
Sbjct: 462 EKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521
Query: 834 VNLPAHTVIIKGTQIYNPEK-GAWTELSPLDIMQMLGRAGRPQYDSY 879
V++P TV++ I + E+ G LS L Q+ GR GR + SY
Sbjct: 522 VDVPNATVMV----IEDAERFG----LSQLH--QLRGRVGRGDHQSY 558
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 25/129 (19%)
Query: 112 SVIQQQLGGQ-PLNIVSGAADEILAVLKNDAVKNPDKKKEI-----EKLLNPIPNHVFDQ 165
S +QQQ G+ P GA D+ L + ++ I + + Q
Sbjct: 174 SQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVL-----KQ 228
Query: 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDL----DMVQE 221
K A D + ++ D +++D+D ESDL D V +
Sbjct: 229 PKKQAKSSK----RRTIAQIDGIDSDDEGDGSD------DDDDEDAIESDLDDSDDDVSD 278
Query: 222 EDEEEEEDV 230
ED E+ D
Sbjct: 279 EDGEDLFDT 287
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1665 | |||
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.98 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.98 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.98 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.98 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.98 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.98 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.98 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.97 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.97 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.97 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.97 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.97 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.97 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.97 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.96 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.96 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.96 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.96 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.96 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.96 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.96 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.95 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.95 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.95 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.95 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.95 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.95 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.95 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.95 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.95 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.94 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.94 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.94 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.94 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.94 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.94 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.94 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.94 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.94 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.94 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.93 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.93 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.93 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.93 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.93 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.93 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.93 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.92 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.92 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.92 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.91 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.91 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.91 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.91 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.91 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.9 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.9 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.89 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.89 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.89 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.88 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.88 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 99.88 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.87 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.87 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.87 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.86 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.86 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.85 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.85 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.85 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.85 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.85 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.84 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.84 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.84 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.84 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.83 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.83 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.82 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.82 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.82 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.82 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.81 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.81 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.81 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.8 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.8 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.79 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.79 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.77 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.77 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.76 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.76 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.73 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.73 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.71 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.7 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.69 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.68 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.67 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.65 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.65 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.65 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.65 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.65 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.64 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.63 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.62 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.62 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.6 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.59 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.59 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.58 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.58 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.57 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.57 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.57 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.56 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.55 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.55 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.54 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.52 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.52 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.5 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.46 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.45 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.45 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.45 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.43 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.39 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.37 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.36 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.36 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.35 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.34 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.34 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.34 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.33 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.33 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.33 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.32 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.32 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.32 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.32 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.31 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.29 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.29 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.27 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.24 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.23 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.2 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.18 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.18 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.18 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.14 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.11 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.09 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.04 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.02 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.02 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.99 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.97 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.97 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 98.97 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 98.92 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 98.92 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 98.78 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.76 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 98.75 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 98.74 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.72 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.68 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.67 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.64 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 98.6 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.58 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.58 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.58 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.54 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.54 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.52 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.51 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.48 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.48 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.45 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.45 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.44 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.43 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.39 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.33 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.3 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.22 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.19 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.15 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 98.15 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.13 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.03 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.03 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 97.94 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.93 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 97.89 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 97.88 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.88 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.79 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.77 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.76 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.76 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.74 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.7 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 97.7 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.68 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.62 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.6 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 97.6 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 97.6 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.59 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.58 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 97.55 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.54 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.49 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.44 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.4 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 97.37 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.36 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.36 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.33 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.32 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.28 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.27 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.24 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.16 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.11 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.01 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.96 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.93 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 96.92 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 96.85 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.8 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.79 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 96.76 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.76 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 96.75 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.71 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.71 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 96.7 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.68 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.62 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.62 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.61 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.57 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.54 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.45 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.44 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 96.43 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.43 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.38 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 96.23 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.23 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.12 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.07 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.04 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 96.0 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 95.99 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.93 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 95.89 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.84 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.82 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.8 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.79 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.72 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 95.72 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.71 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.71 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.66 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.64 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.61 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.59 | |
| PRK06526 | 254 | transposase; Provisional | 95.43 | |
| PRK06526 | 254 | transposase; Provisional | 95.42 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 95.39 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.37 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.33 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 95.3 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.23 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.23 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 95.2 | |
| PRK08181 | 269 | transposase; Validated | 95.14 | |
| PRK08181 | 269 | transposase; Validated | 95.14 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 95.14 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 94.99 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.97 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.97 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.93 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.86 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 94.85 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.83 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.81 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.77 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 94.77 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.7 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 94.69 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 94.63 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 94.59 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.58 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 94.56 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 94.52 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 94.5 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 94.48 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.47 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 94.47 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 94.37 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 94.29 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 94.22 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 94.15 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 94.15 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.08 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 94.07 | |
| PRK08727 | 233 | hypothetical protein; Validated | 94.05 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.04 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 93.99 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 93.98 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 93.98 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 93.97 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 93.93 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.92 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 93.92 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 93.91 | |
| PRK08116 | 268 | hypothetical protein; Validated | 93.9 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.9 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.9 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 93.9 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 93.89 | |
| PRK08116 | 268 | hypothetical protein; Validated | 93.84 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 93.8 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.78 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.78 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.76 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 93.73 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 93.7 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 93.7 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 93.7 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 93.69 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 93.64 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 93.62 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 93.61 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 93.6 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.58 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 93.5 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 93.49 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 93.49 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 93.47 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.39 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 93.34 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 93.32 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 93.3 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 93.29 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 93.22 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 93.16 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 93.14 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 93.12 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 93.1 | |
| PRK08727 | 233 | hypothetical protein; Validated | 93.08 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 93.07 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 93.06 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 93.05 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 93.05 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 92.96 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 92.92 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 92.9 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 92.88 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.84 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 92.81 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 92.81 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 92.8 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 92.74 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 92.72 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 92.67 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 92.65 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 92.64 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 92.57 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.53 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 92.48 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 92.45 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 92.44 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 92.42 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 92.42 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 92.42 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 92.41 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 92.38 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 92.36 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 92.36 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 92.35 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 92.3 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 92.28 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.26 |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-258 Score=2330.53 Aligned_cols=1435 Identities=66% Similarity=1.053 Sum_probs=1315.2
Q ss_pred HHHhhhhhccccccccccCCCCCCCCCCCCCCCcceeecCCCCCchhhhhccccccccchhhhhccCCCCccccccCCCC
Q 000324 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (1665)
Q Consensus 166 l~~l~k~ItD~~~~~~~~~~~~~~~~~~~d~~~gv~v~fd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1665)
+|+|+|+||||...++.. ...+..+++..||+|.|++.|++++++..+.++++.++|++...++.....++-....
T Consensus 1 lV~l~k~itdy~~~~~sk----~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDSK----KVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCch----hhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 589999999996554421 1223556777899999998877776544445543332221111000011111111110
Q ss_pred CCCCCCCccccCCCCCcccCChHHHHHHHHhHhccCCChHHHHHHHHHHHHHHhc-CChhHHHHHHHhccCCCChhHHHH
Q 000324 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (1665)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1665)
+ +++...+ ....+++||++||||+++++|. ++..+|+....+..+|+. .+++++|++|+.+++|++|.+|+.
T Consensus 77 k-~el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 K-TELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred c-chhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 1 1100001 1145899999999999999999 666666666666667766 689999999999999999999999
Q ss_pred HHhchhhhHhHhhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHhhhccccCCCCCC
Q 000324 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404 (1665)
Q Consensus 325 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1665)
|++||++|+|||+|++|..++|+..|++.|+..+..+..++.++..+......+.-+..+.++. +.++..
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~~l~~~--e~~~~~-------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEKKLEKR--EELLVS-------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhhhhhcc--chhhhh--------
Confidence 9999999999999999988899999999999986326778888766543221110000011111 111100
Q ss_pred CCCCccCCCCCCCCCccccccccccccccCCcccccceeeCCCCCccccCCCceEEecCCCCCCCCCCCCCccccCCCCh
Q 000324 405 RRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPE 484 (1665)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~ 484 (1665)
. ....++...+|..+++.+|++.+.|++|+++|.+++|.+|+|+++...++|+++|||++.+.|+..++.+..++++|.
T Consensus 220 ~-~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~ 298 (1674)
T KOG0951|consen 220 V-IALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPK 298 (1674)
T ss_pred h-hhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcc
Confidence 0 011112233457789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
|.+++|.|..+||++|++++++++.+++|+++|||||+|||++|++.||+.+..+.+.+|..+...++++|++|+++||+
T Consensus 299 Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvq 378 (1674)
T KOG0951|consen 299 WNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQ 378 (1674)
T ss_pred hhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
+++..|.+++.++|++|+++|||.+.+.+++.+++|||||||+||.++|+..++.+.+.++++||||+|++||+|||++|
T Consensus 379 E~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLE 458 (1674)
T KOG0951|consen 379 EMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLE 458 (1674)
T ss_pred HHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHH
Q 000324 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1665)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1665)
+|++|+.+..+.....+|+||||||||||+||+.||++++ .++|+|+++|||+|+.|+|+|++++++.+++++||+.||
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC
Q 000324 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1665)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm 804 (1665)
++++++.+++|+|||||||+++.++|+.+++.+...+++..|++.++.++++++.+++...|.+|++++++|||+|||||
T Consensus 538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 805 ~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
++.||..++++|++|+++|||||+|+|||||+|+++|||+||++|||++|+|.++|+.|.+||+|||||||+|+.|+++|
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhH
Q 000324 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (1665)
Q Consensus 885 l~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (1665)
++.+++++||.+++|+++||||++.++|.|.|||||+.| +++.+|+++||+|||+|+||.+||..|+++++ .+|..+
T Consensus 698 it~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~l 774 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRLL 774 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999997 458999
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcC
Q 000324 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (1665)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~ 1044 (1665)
++.+.+++|+|+..|+++|+|.|+..+|.+++|++|+|+|+|||.+.+|..|++.|+++|++++++++||+|.||++++|
T Consensus 775 e~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~sv 854 (1674)
T KOG0951|consen 775 EQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSV 854 (1674)
T ss_pred HHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHH
Q 000324 1045 RQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124 (1665)
Q Consensus 1045 R~~E~~~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~ 1124 (1665)
|++|+.+|++|++++|||+++.+++|.+|||+|||+|||+++++||+|.+||+||.|+|+|++||+|||++++||+.++.
T Consensus 855 r~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~ 934 (1674)
T KOG0951|consen 855 REEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQ 934 (1674)
T ss_pred cHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCCCchhhccCChHHHhhhhcCchhhHHHHHHHhcCCcceEEEE
Q 000324 1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (1665)
Q Consensus 1125 ~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~P~l~l~~~ 1204 (1665)
.+|.+|||+++|||++++|||||++++.++++++|++.++|.++++|++.|++++++.|++|+.++.++++||++.++++
T Consensus 935 ~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~ 1014 (1674)
T KOG0951|consen 935 MALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAH 1014 (1674)
T ss_pred HHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCceEEEEEEEccCCccCCCCCCCcccEEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEE
Q 000324 1205 VQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIR 1284 (1665)
Q Consensus 1205 v~pit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~ 1284 (1665)
+||||++.++|+|+++|+|.||+++||..|+||++|||.++++|+|+++|.++++ +|.+.|++|+++| ||+|||+
T Consensus 1015 vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~ 1089 (1674)
T KOG0951|consen 1015 VQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIR 1089 (1674)
T ss_pred eeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEE
Confidence 9999999999999999999999999999999999999999999999999999984 8999999999999 9999999
Q ss_pred EeecccccccccccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEEC
Q 000324 1285 VVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAA 1364 (1665)
Q Consensus 1285 ~vSD~wl~~e~~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~A 1364 (1665)
++||+|++++..+|++|+|+++|+++||||+++|++|+|++++.++.+..+|..| ||+|+|+|+.+|++++||+|+|
T Consensus 1090 lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~---n~iqtqVf~~~y~~nd~v~vga 1166 (1674)
T KOG0951|consen 1090 LVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDF---NPIQTQVFTSLYNTNDNVLVGA 1166 (1674)
T ss_pred EeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhcccc---CCceEEEEeeeecccceEEEec
Confidence 9999999999999999999999999999999999999999999999999998744 9999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEE
Q 000324 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444 (1665)
Q Consensus 1365 pTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~ 1444 (1665)
|+|||||.|+++++++ . .+.+ +++||+|..+.+..++..|.++|+..+|+.++.++|+.+.+.+++..++|+|+
T Consensus 1167 ~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~ 1240 (1674)
T KOG0951|consen 1167 PNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIIS 1240 (1674)
T ss_pred CCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEe
Confidence 9999999999999996 2 2333 99999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhccc
Q 000324 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT 1524 (1665)
Q Consensus 1445 TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~ 1524 (1665)
||++|+.+ + .+|.++++|.||+|++++..|+.+|++++ |++|.+++.++.|++++|.+++|++|+ +|..
T Consensus 1241 tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s 1309 (1674)
T KOG0951|consen 1241 TPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGAS 1309 (1674)
T ss_pred chhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---cccc
Confidence 99999987 1 58899999999999999888999999999 999999999999999999999999999 9999
Q ss_pred CCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCc
Q 000324 1525 SHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQ 1604 (1665)
Q Consensus 1525 ~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~ 1604 (1665)
..++|||.|+.||+|++++++++...++.+++.+|.+|.|.++..+...++|++||+++|++|+.+|..|+.++.++.+.
T Consensus 1310 ~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~ 1389 (1674)
T KOG0951|consen 1310 SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPD 1389 (1674)
T ss_pred ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999988877333
Q ss_pred ccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1605 KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1605 ~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
|+....++ .|..|++.+.+||+ |.||+..+..++-.+|..|.|+|+|
T Consensus 1390 ---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1390 ---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred ---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEE
Confidence 33221111 67899999999999 9999999999999999999999987
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-202 Score=1826.49 Aligned_cols=1193 Identities=49% Similarity=0.803 Sum_probs=1124.7
Q ss_pred CCccccccccccccccCCcccccceeeCCCCCccccCCCceEEecCCCCCCCCCCCCCccccCCCChhhHhhcCCCCCCC
Q 000324 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (1665)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~l~ 497 (1665)
..++++++--.+.+.. +.++.+.++.+|+|+.|.+.+.|||+.+|+..+++ ...+.++.|++||+..++.|.+|+.||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 3456677655444332 24556679999999999999999999999998888 566788999999999998888999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (1665)
.+|+.|||.+|++++|+|||||||||||.+|+|+||+.+.++. ..+.+..+++|||||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999998742 336677789999999999999999999999999999
Q ss_pred CcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcC-CCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhh
Q 000324 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (1665)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~-~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~ 656 (1665)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.||+|++|+++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999985 4567799999999999999999999999999999999999
Q ss_pred ccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhC-CCe
Q 000324 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (1665)
Q Consensus 657 ~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 735 (1665)
.+..+||||||||+||++|+|.||++++..++|+|+..|||+|+.+.++|.+.++.......+.+.||+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999999886666677888999999887665 889
Q ss_pred EEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHH
Q 000324 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (1665)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~ 815 (1665)
++||||+|+++.++|+.|.+.+........|++. .+++.|++++++|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~--------------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS--------------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCC--------------hhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999999998877766666543 15678999999999999999999999999999
Q ss_pred HhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|..|.++|||||+|+|||||+||+.|||+||+.||..+|+++++++.|++|++|||||||||+.|.++|+|+.+.+++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHH
Q 000324 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (1665)
Q Consensus 896 ~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (1665)
++++++.||||+|..+|.|||||||++|||+++++|++||+|||||+||.+||..||+..+.+..||.+..++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHH
Q 000324 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (1665)
Q Consensus 976 ~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l 1055 (1665)
+..|.+..||.+|.+++.+.+|++||+||+|||+|+||+.|++..++.+++.++|.++|+|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCChHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHc
Q 000324 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTK 1135 (1665)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~ 1135 (1665)
++..-....-+.+ ..|+|+|+|+||||..+..|+|.+|..|+.|||+||.||+|+++..++|...+.+++.|||||++
T Consensus 658 ~~~~~~~~~~~~~--~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier 735 (1230)
T KOG0952|consen 658 NEDSCEKYPFGGE--KGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIER 735 (1230)
T ss_pred Hhccccccccccc--chhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 9763221111122 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCCCHHHHHHHHhCCCCchhhccCChHHHhhhhcCchhhHHHHHHHhcCCcceEEEEEeeccCceEEE
Q 000324 1136 RMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKV 1215 (1665)
Q Consensus 1136 ~~W~~~~pL~Q~~~i~~~~~~~l~~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~P~l~l~~~v~pit~~~l~v 1215 (1665)
+||...+||+||+.+.. ++ ++++. .+.+|..+++++++++.++| ++.++.+|.+++++.++|+|++++++
T Consensus 736 ~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vlri 805 (1230)
T KOG0952|consen 736 RMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVLRI 805 (1230)
T ss_pred HHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhhee
Confidence 99999999999998776 44 44443 78899999999999988888 88999999999999999999999999
Q ss_pred EEEEccCCccCCCCCCCcccEEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEEEeecccccccc
Q 000324 1216 ELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295 (1665)
Q Consensus 1216 ~l~i~~~~~w~~~~h~~~e~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~ 1295 (1665)
.+.++|+|.|++.+||+...+ +|++|.+...++|++.+.+.++..++.+.+.|++|+++|+|+++.++.+||.|++++.
T Consensus 806 ~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~ 884 (1230)
T KOG0952|consen 806 EVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAET 884 (1230)
T ss_pred eeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCce
Confidence 999999999999999998777 9999999999999999999988888999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHH
Q 000324 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSE 1375 (1665)
Q Consensus 1296 ~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~ 1375 (1665)
..+++++|+++|...++.|+++++.|+|..+|.+..++.+|+ .|+|+|++.|..+|+.+.|+++.+|||+|||++|+
T Consensus 885 ~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae 961 (1230)
T KOG0952|consen 885 VYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAE 961 (1230)
T ss_pred eccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhcCCccCcchhHHH
Confidence 999999999999999999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHh
Q 000324 1376 FAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR 1455 (1665)
Q Consensus 1376 l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~ 1455 (1665)
+++++.+... +.. +++||+|.++|+....++|.+++... |++++.++|+...+...+..++++|+||++|+.++|.
T Consensus 962 ~a~~~~~~~~-p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rs 1037 (1230)
T KOG0952|consen 962 LAIFRALSYY-PGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRS 1037 (1230)
T ss_pred HHHHHHhccC-CCc--cEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcccc
Confidence 9999988883 445 99999999999999999999888766 9999999999999988899999999999999999999
Q ss_pred hhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCC
Q 000324 1456 WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV 1535 (1665)
Q Consensus 1456 ~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~ 1535 (1665)
|..++.++++.++|+||.|++++++||++|.+.++++++.++++..+|++++|..++|+.|+++|++.... |||.|.+
T Consensus 1038 w~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~sv 1115 (1230)
T KOG0952|consen 1038 WQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSV 1115 (1230)
T ss_pred ccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred CccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCccc
Q 000324 1536 RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (1665)
Q Consensus 1536 rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (1665)
||+|+++++++|+..+++.++.+|++|+++++..+ ++.+|+|||+.+|++++.+|..|+..+..++.+.+ |+++++.+
T Consensus 1116 rpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~-fl~~de~e 1193 (1230)
T KOG0952|consen 1116 RPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ-FLNMDELE 1193 (1230)
T ss_pred ccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeecccccccchHhHHhhccCCCCchh-ccCCCHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred chhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHH
Q 000324 1616 VEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (1665)
Q Consensus 1616 l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v 1651 (1665)
++.++.+++|.+|+.++++||+.||+|+...||..+
T Consensus 1194 ~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1194 LEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 999999999999999999999999999999999754
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-90 Score=912.11 Aligned_cols=660 Identities=25% Similarity=0.366 Sum_probs=555.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
||+++...+ .||.+|+|+|++|++..+.+++|++++||||||||++|++++++.+.. +.++||++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeCh
Confidence 688888888 589999999999999878788899999999999999999999998853 3489999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1665)
|+||.|++++|++ +..+|++|+.++|+..........++|+|||||+|+.++|+.. .+++.+++||+||+|++.+ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999996 5566999999999988766666789999999999999999754 4788999999999999998 7
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHH
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
||+.+|.+++++.+ ..+.+|+|+||||++|+++++.|++... |.+.+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAEL------VDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCCc------ccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998864 3567899999999999999999998652 6788999998765432111000000000
Q ss_pred HH----HHHHHHHHHH-hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHh-------hhhcccc
Q 000324 719 MN----DLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS-------HTDMVKS 786 (1665)
Q Consensus 719 ~~----~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~-------~~~~~~~ 786 (1665)
+. ...+..+... ..++++||||+||+.|+.+|..|....... +. ......+.. ......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~---~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-----LT---AAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CC---HHHHHHHHHHHHHHHhccCcccc
Confidence 00 1122222222 247899999999999999999998764321 00 001111111 1122356
Q ss_pred chhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 787 ~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
..|+.++..||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||++++.||+.. ++.+++..+|+|
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Q 374 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999876 578999999999
Q ss_pred hhcccCCCCCCCceEEEEEeCCC--cHHHHHHhh-cCCCccccchh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHH
Q 000324 867 MLGRAGRPQYDSYGEGIIITGHS--ELRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (1665)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ll-~~~~piES~l~--~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~ 941 (1665)
|+|||||+|+|..|.+++++... ..++|.+++ ..+.|+||+|. ..|.+++++||+.|++.+.+|+++|++|||+|
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~ 454 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYA 454 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHH
Confidence 99999999999999999999875 345677777 58899999995 48999999999999999999999999999999
Q ss_pred HHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcC
Q 000324 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLK 1021 (1665)
Q Consensus 942 ~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1021 (1665)
++. ..++++.++|++++..|.++|||+.+ ++.+.+|++|+++|+|||+|.|+..|.+.|+
T Consensus 455 ~~~------------------~~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 455 TQT------------------DDTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred hhc------------------cchHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 752 01346678999999999999999975 4679999999999999999999999999988
Q ss_pred CCC--CHHHHHHHhcCCccCCCCcCChhHHHHHHHHh--------ccCCCCCCCC-CCC--hHHHHHHHHHHHHcCCCCC
Q 000324 1022 PTM--GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKLE 1088 (1665)
Q Consensus 1022 ~~~--~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~--------~~~~~~~~~~-~~~--~~~K~~~Llqa~is~~~~~ 1088 (1665)
... +..++|.++|.++||..+++|++|...|.++. .++|.++.+. ++. ++.|+++|||+||++.+++
T Consensus 515 ~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~ 594 (737)
T PRK02362 515 AAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEE 594 (737)
T ss_pred hcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 764 78999999999999999999999999998875 5566655432 233 7899999999999999963
Q ss_pred ----CCcc-hhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCC
Q 000324 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (1665)
Q Consensus 1089 ----~~~l-~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~ 1163 (1665)
.|.+ .+|+..++++|.||++|+++||... |..++..+++|++||.+++|++.+||.|+||++++++++|++.|+
T Consensus 595 ~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~-~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi 673 (737)
T PRK02362 595 RITERYGVGPGDIRGKVETAEWLLHAAERLASEL-DLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGI 673 (737)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCC
Confidence 5667 5899999999999999999998764 557799999999999999999999999999999999999999999
Q ss_pred -CchhhccCChHHHhhhhcCchhhHHHHHHHhcC
Q 000324 1164 -AWERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (1665)
Q Consensus 1164 -~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~~ 1196 (1665)
+++++..++++++..+++ ++.++.|++.+..+
T Consensus 674 ~s~~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 674 ESRADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred CCHHHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 889999999999999977 67788888877743
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-86 Score=872.18 Aligned_cols=658 Identities=27% Similarity=0.384 Sum_probs=537.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
+|+.+...+ .||++|||+|.++++..+.+++|++++||||||||++|++|+++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 577777777 6899999999999998777788999999999999999999999987642 3589999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1665)
++||.|++++|.. +..+|++|..++|+..........++|+|+|||+|+.++++.. .+++++++||+||+|++.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999987 4567999999999988766666789999999999999988654 4788999999999999987 6
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEE--ee---ecCchh
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI--GI---QVKKPL 713 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~--~~---~~~~~~ 713 (1665)
||+.++.+++++ ...+|+|+||||++|+.+++.|++... +.+.+||+++..... +. ......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998752 567889999864322 11 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCc-h-hHHHHHhhhhccccchhhh
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS-V-SREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~-~-~~~~l~~~~~~~~~~~l~~ 791 (1665)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... . -.+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 111334445555443 3679999999999999999998765321 111100 0 0111111122345678999
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
++.+||++|||||++++|..+++.|++|.++|||||++++||||+|+++|||++++.|+. .++.++++.+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999972 357889999999999999
Q ss_pred CCCCCCCceEEEEEeCCCc-HHHHHHhh-cCCCccccchh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcC
Q 000324 872 GRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~-~~~y~~ll-~~~~piES~l~--~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~n 947 (1665)
||+|+|..|.++++++..+ .++|.+++ ..+.++.|.+. +.|.++++++|+.|++.+.+|+++||++||+|+ +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998765 45566663 23334445443 356899999999999999999999999999995 46
Q ss_pred CcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 000324 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (1665)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~---~~ 1024 (1665)
|.+|++ .+++++++..|.+++||+.++ ++.+.+|++|+++|+|||+|.|+..|.+.++. .+
T Consensus 448 ~~~~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 766642 246888999999999999864 46799999999999999999999999998876 67
Q ss_pred CHHHHHHHhcCCccCCCCcCChhHHHHHH--------HHhccCCCCCCCCCCC--hHHHHHHHHHHHHcCCCCC----CC
Q 000324 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELA--------KLLDRVPIPVKESLEE--PSAKINVLLQAYISQLKLE----GL 1090 (1665)
Q Consensus 1025 ~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~--------~l~~~~~~~~~~~~~~--~~~K~~~Llqa~is~~~~~----~~ 1090 (1665)
++.++|+++|.++||..+++|++|...|. +|..++|.+.....+. ++.|+++|||+|||+.+++ .|
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~ 591 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETY 591 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 88999999999999999999999998888 3434444432222333 7899999999999999874 23
Q ss_pred cc-hhhHHHHHHhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCC-Cchh
Q 000324 1091 SL-TSDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWER 1167 (1665)
Q Consensus 1091 ~l-~~D~~~i~~~a~rl~~a~~ei~~~~g~~-~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~-~~~~ 1167 (1665)
.. .+|+..++++|.||++|+++||...||. .....+.+|++||+||+|++++||.|+||+|++++++|.++|+ ++.+
T Consensus 592 ~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~ 671 (720)
T PRK00254 592 NIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIED 671 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHH
Confidence 33 4899999999999999999999977763 3334445899999999999999999999999999999999999 8999
Q ss_pred hccCChHHHhhhhcC-chhhHHHHHHHhc
Q 000324 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (1665)
Q Consensus 1168 l~~l~~~el~~ll~~-~~~~~~i~~~~~~ 1195 (1665)
+..+++++|..+.+. ++.++.|++.++.
T Consensus 672 i~~a~~~el~~~~gi~~~~a~~i~~~~~~ 700 (720)
T PRK00254 672 IVNAKPSELLKVEGIGAKIVEGIFKHLGV 700 (720)
T ss_pred HHhCCHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 999999999998543 5778888888773
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-87 Score=852.83 Aligned_cols=738 Identities=34% Similarity=0.466 Sum_probs=613.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+..+ ++++|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 345555555 4555556555555555555689999999999999999999999999874 4689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccC-
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~- 638 (1665)
||||.|++++|+ ++..+|++|++.|||.......+.+++|||+||||||+++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788999999999999999999999999999999999999999884 8999999999999999996
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHH
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
|||++|.+++++++. ...+||||||||+||+.++|.||++++....+++.+.+|+++..+.+.+...... ..-..
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999763 3459999999999999999999999987788999999999999999988775543 11222
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcE
Q 000324 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (1665)
....++..+..... ++|+|||||||+.+..+|+.++........-................+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 23344555555444 78999999999999999999996433222111111111111122223334455689999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (1665)
++|||||++++|..+++.|+.|.++|||||+|||||||+|+.+|||+++..|++.. +++++++.|++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~-g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG-GIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC-CeEECchhhHhhccCcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999954 49999999999999999999999
Q ss_pred CceEEEEEe-CCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCcc
Q 000324 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (1665)
Q Consensus 878 ~~G~~iil~-~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~ 956 (1665)
..|.+++++ +..+..++.+...++.|.+ +.+.|.+..+++..++++.+..++++|+.+||+|.|++.||.+|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5566677777777766655 666666667999999999999999999999999999999999887621
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCC---CHHHHHHHh
Q 000324 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (1665)
Q Consensus 957 ~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~~~ll~~~ 1033 (1665)
..+.+..++..|.+++++ .+.....+.+|++|+.+|+|||+|.|++.|.+.+.... +..+++..+
T Consensus 474 -----------~~~~i~~~~~~L~~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 225678899999998722 23345789999999999999999999999998876654 889999999
Q ss_pred cCCccCCCCcCChhHHHHH--HHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHH
Q 000324 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (1665)
Q Consensus 1034 s~s~Ef~~i~~R~~E~~~l--~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ 1111 (1665)
|.++||..+++|.++..++ ..+.+..++...+....+..|.+.++|++.+...+.++....|..+|.++..+...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999885 55566677777777778889999999999999999889999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCCCchhhccCChHHHhhhhcCchhhHHHHH
Q 000324 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHK 1191 (1665)
Q Consensus 1112 ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~ 1191 (1665)
.++....|. .+. ++.|++++.+..|....++.|+ .+...+..+++ .|+.-+++.++..-+-...++..+..+..++
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie-~gv~~e~~~~l~~i~~~grvrar~ly~~g~~ 697 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE-YGVRSEELLELVEIRGVGRVRARKLYNAGYK 697 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh-cCCChhhhcccccccccchhHHHHHHHhhhc
Confidence 999999999 555 9999999999999999999999 77777666665 4442256666543332222555667777788
Q ss_pred HHhcCCcceEEEEEeeccCceEEEEEEEccCCccCCCCCCCcccEEEEEEeCCCCeEEEEeeeeee
Q 000324 1192 FVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLK 1257 (1665)
Q Consensus 1192 ~~~~~P~l~l~~~v~pit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~d~~~~~il~~~~~~l~ 1257 (1665)
.++.+|.......+.|+++...++.-.|.+.+.|....|+..+.||..+.+.+...++|.+.+.+.
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (766)
T COG1204 698 SLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILA 763 (766)
T ss_pred cHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccC
Confidence 888888777777788887776777777788899999999999999999999999999998877654
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-82 Score=828.34 Aligned_cols=643 Identities=24% Similarity=0.350 Sum_probs=533.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
||+.+.+.+ .+|+ |+++|.++++.+ .+++|++++||||||||++|++++++.+.. +.++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEEEEech
Confidence 677777777 4565 999999999986 556789999999999999999999988754 3479999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~ 638 (1665)
++||.|++++|++ +...|++|...+|+..........++|+|+|||+|+.+.+++. .+++++++||+||+|++.+ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4567899999999987766666789999999999999998865 5688999999999999987 6
Q ss_pred CchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc--hhHHH
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (1665)
||+.++.+++++.. ..++.|+|+||||++|..++++|++... +...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~~------~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNASL------IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCCc------cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999999887643 3567999999999999999999998652 667889999886544221100 00000
Q ss_pred HHHHHHHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 717 QLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 717 ~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
.. .+...+.. ...++++||||+||+.|+.+|..|.......... . .........+..|++++++
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 01122222 2347899999999999999999998764322111 0 0011123346788999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.++..|+.. ...++|+.+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999998888754 246799999999999999999
Q ss_pred CCCceEEEEEeCCCc-HHHHHHhh-cCCCccccchhHh--hHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCccc
Q 000324 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSK--LADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~-~~~y~~ll-~~~~piES~l~~~--l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y 951 (1665)
+|..|.|++++...+ .++|.+++ +.+.|+||+|... +..+++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987654 67888887 7899999999865 44455699999999999999999999999973 21
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 000324 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (1665)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~ 1031 (1665)
.+++.++|++|+..|.++|||+.+ +.+.+|++|+++|+|||+|.|+..|.+.++..++..++|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124568899999999999999743 5589999999999999999999999999999999999999
Q ss_pred HhcCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCCC----CCcch-hhHHHHHHhHHHH
Q 000324 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLE----GLSLT-SDMVFITQSAGRL 1106 (1665)
Q Consensus 1032 ~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~~----~~~l~-~D~~~i~~~a~rl 1106 (1665)
++|.++|| +|+|..|...+.++.+.+|. .....++.|+++|||+||||.+++ .|... +|+..+++++.|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGV---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 89999888888888888764 234468999999999999999973 34454 7999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHHhCCC-CchhhccCChHHHhhhhcCc-h
Q 000324 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-K 1184 (1665)
Q Consensus 1107 ~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~-~~~~l~~l~~~el~~ll~~~-~ 1184 (1665)
.+|+..+|.. +|..++..+-.|.++|.||+|++.+||.|+|||++.++++|.++|+ ++.++.+++++++.+++++. +
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 9999999875 4566666677788889999999999999999999999999999999 89999999999999998764 4
Q ss_pred hhHHHHHHHhc
Q 000324 1185 MGRTLHKFVHQ 1195 (1665)
Q Consensus 1185 ~~~~i~~~~~~ 1195 (1665)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 55666665544
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-63 Score=607.81 Aligned_cols=491 Identities=29% Similarity=0.533 Sum_probs=440.7
Q ss_pred ccCCCC-hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEE
Q 000324 478 KISEMP-EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (1665)
Q Consensus 478 ~i~~Lp-~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i 556 (1665)
|++.|. +.+...|.. +||+|+++|+..+++++|++|+||+|||||.|+.+++++ +. ...+++||
T Consensus 1128 ~~~~l~N~~~~~lf~~---~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~~-------~~~~~vyi 1192 (1674)
T KOG0951|consen 1128 PVSALRNPSFETLFQD---FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----PD-------TIGRAVYI 1192 (1674)
T ss_pred chhccCCcchhhhccc---cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----Cc-------cceEEEEe
Confidence 566664 445555543 499999999999999999999999999999999999987 11 35589999
Q ss_pred cccHHHHHHHHHHHHHhhcc-CCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 557 APMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 557 aP~raLa~q~~~~~~~~~~~-~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
+|+-+.+..+++.|.++++. .|..+..++|+.+.+.......+|+|+|||+||.+. ..+.+++.|.||.|++
T Consensus 1193 ~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~lq-------~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1193 APLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLLQ-------SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred cchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHHh-------hhhhcceEeeehhhhh
Confidence 99999999999999999875 589999999999999999999999999999999882 5788999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHH
Q 000324 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (1665)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (1665)
++..|+++|.|++ ++.+..+..+++|+|++|..+.|+.|+ ++.. ..++|+|.++.||+|+..++.++.......+
T Consensus 1266 gg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s-~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~ 1340 (1674)
T KOG0951|consen 1266 GGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGAS-SSGVFNFSPSVRPVPLEIHIQSVDISHFESR 1340 (1674)
T ss_pred cccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---cccc-ccceeecCcccCCCceeEEEEEeccchhHHH
Confidence 9889999999999 888888899999999999999999888 7766 4789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcC
Q 000324 716 FQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 716 ~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
+.+|.+..|..+..+.+ +++.+||+++|+.|..+|..+....... ....+-.+.+. .+..|++.++
T Consensus 1341 ~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~------------~~~~l~~~~e~-~~~~l~e~l~ 1407 (1674)
T KOG0951|consen 1341 MLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHAD------------EPDYLLSELEE-CDETLRESLK 1407 (1674)
T ss_pred HHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccC------------cHHHHHHHHhc-chHhhhhccc
Confidence 99999999999988877 7799999999999999998887664332 11222222222 5778999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 795 ~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
+||+ |-||+..|...+-.+|..|.|+|+|...- .||+-..++.||+.||++||...+.+.+|++++++||+|+|.|
T Consensus 1408 ~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~- 1483 (1674)
T KOG0951|consen 1408 HGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG- 1483 (1674)
T ss_pred cccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC-
Confidence 9999 99999999999999999999999999888 9999999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCC
Q 000324 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLA 954 (1665)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~ 954 (1665)
.|.|+++|...+..||++|+.+++|+||++...|+|++|+||+.++|.|.+||++||+|||+|+|+..||+||++.
T Consensus 1484 ----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~ 1559 (1674)
T KOG0951|consen 1484 ----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQ 1559 (1674)
T ss_pred ----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceeccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 000324 955 PEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (1665)
Q Consensus 955 ~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (1665)
+. +..+++.++++++++++..|+...||+.+..+. -+|.|+|+|||+|-|+..|...++...
T Consensus 1560 ~v---~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~-----~l~~Ias~y~i~y~ti~~f~~~L~~~t 1621 (1674)
T KOG0951|consen 1560 GV---SHRHLSDFLSELVETTLNDLEESKCIEVDDEDD-----SLGMIASYYYISYITIERFSSSLSEKT 1621 (1674)
T ss_pred cc---chhhhhhHHHHHHHHHHHHhhcCceEEeecccc-----ccchhhhhceeeeEeeehhhhhhhhhh
Confidence 84 567899999999999999999999999876544 299999999999999998876665443
|
|
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-53 Score=504.78 Aligned_cols=308 Identities=45% Similarity=0.765 Sum_probs=294.1
Q ss_pred cccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhccCCCCCC-CCCCChHH
Q 000324 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (1665)
Q Consensus 994 ~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~~-~~~~~~~~ 1072 (1665)
+.+|++|++||+|||++.||+.|+..+++.++..++|.++|.|+||.++++|++|+.+|.+|.+.+|++++ ...+.++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999877 45788999
Q ss_pred HHHHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCH
Q 000324 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (1665)
Q Consensus 1073 K~~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~ 1152 (1665)
|+++||||||+|++++.++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||+||+|++++||+||||+++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CchhhccCChHHHhhhhcCc-hhhHHHHHHHhcCCcceEEEEEeeccCceEEEEEEEccCCccCCCCC
Q 000324 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (1665)
Q Consensus 1153 ~~~~~l~~~~~-~~~~l~~l~~~el~~ll~~~-~~~~~i~~~~~~~P~l~l~~~v~pit~~~l~v~l~i~~~~~w~~~~h 1230 (1665)
+.+++|+++|+ +++++.++++++++.+++++ +.+++++++++.||+++|+++++|+++...++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999996 89999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEEEeeccccccccccccccc
Q 000324 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (1665)
Q Consensus 1231 ~~~e~~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~vs~~ 1302 (1665)
++.|.||+||+|+++++|+|+++|++++....+++.++|.+|...+. ++|+|+++||+|+|++...+++|+
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999999999887665689999999985444 999999999999999999888763
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=469.00 Aligned_cols=558 Identities=24% Similarity=0.353 Sum_probs=423.2
Q ss_pred cccCC--CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcE
Q 000324 477 IKISE--MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552 (1665)
Q Consensus 477 ~~i~~--Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~k 552 (1665)
+++++ +|+.++..+ .|++.|.|+|..++.+.+-.++|++|.++|+||||+++.++-+..+... +.|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~K 263 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKK 263 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCe
Confidence 34554 489999998 7899999999999999988889999999999999999999988887653 558
Q ss_pred EEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCcccccee
Q 000324 553 IVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625 (1665)
Q Consensus 553 il~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~ 625 (1665)
.+|++|..|||+|.++.|+++..++|++|..-.|-..+.... ...++|||+|.|-+|.++|... .+.+|+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~---~lgdiG 340 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK---DLGDIG 340 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC---cccccc
Confidence 999999999999999999999999999999988866554332 2478999999999999999874 688999
Q ss_pred EEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEE
Q 000324 626 LLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704 (1665)
Q Consensus 626 liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~ 704 (1665)
.|||||+|.|.| +||+-+.-++.|+.+ ..+..|+|+||||+.|+++++..|+..+ +....||||++.|.
T Consensus 341 tVVIDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~l------V~y~~RPVplErHl 410 (830)
T COG1202 341 TVVIDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKL------VLYDERPVPLERHL 410 (830)
T ss_pred eEEeeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCee------EeecCCCCChhHee
Confidence 999999999998 799999999999976 4568999999999999999999999875 23456999999988
Q ss_pred EeeecCchhHHHHHHHHHHHHHHHHHhC---CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhh
Q 000324 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781 (1665)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 781 (1665)
+...... .+...++.++-........ .+|+|||++||+.|..+|..|...+..
T Consensus 411 vf~~~e~--eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~---------------------- 466 (830)
T COG1202 411 VFARNES--EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLK---------------------- 466 (830)
T ss_pred eeecCch--HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcc----------------------
Confidence 7655332 3333444444333322222 689999999999999999999877643
Q ss_pred hccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCH
Q 000324 782 DMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861 (1665)
Q Consensus 782 ~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~ 861 (1665)
...+||||+..+|..++..|.++.+.++|+|++|+.|||+|+-.||+..- . -+..|+|+
T Consensus 467 ---------------a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL-----a-MG~~WLs~ 525 (830)
T COG1202 467 ---------------AAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL-----A-MGIEWLSV 525 (830)
T ss_pred ---------------cccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----H-cccccCCH
Confidence 35679999999999999999999999999999999999999999887421 1 12478999
Q ss_pred HHHHhhhcccCCCCCCCceEEEEEeCCCcH----------HHHHHhh-cCCCccccchhH-hhHHHHHHHHHhccccChH
Q 000324 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSEL----------RYYLSLM-NQQLPIESQFVS-KLADQLNAEIVLGTVQNAK 929 (1665)
Q Consensus 862 ~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~----------~~y~~ll-~~~~piES~l~~-~l~d~lnaeI~~g~i~~~~ 929 (1665)
.+|.||.||||||+|+..|.+|+++.+... +.-.+++ ..+.|+.-.... .-.+++.| ..|...+..
T Consensus 526 ~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~ 603 (830)
T COG1202 526 REFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLS 603 (830)
T ss_pred HHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHH
Confidence 999999999999999999999999976432 1223343 345565544433 22233333 233333332
Q ss_pred HHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCC
Q 000324 930 EACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009 (1665)
Q Consensus 930 ~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~ 1009 (1665)
+ ++- -|+...|-..+ ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.
T Consensus 604 ~-i~~-----------v~~~~~g~~~~---------------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~ 654 (830)
T COG1202 604 V-IER-----------VNSLMLGAAFD---------------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLG 654 (830)
T ss_pred H-Hhh-----------cChhhccccCC---------------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecC
Confidence 2 111 12222332111 14678899999999865 3669999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhc-cCCCCCCC--------C----CC-Ch--HHH
Q 000324 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE--------S----LE-EP--SAK 1073 (1665)
Q Consensus 1010 ~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~-~~~~~~~~--------~----~~-~~--~~K 1073 (1665)
|.++..+...+-..+ +.+++++.-.=|++..+...=+..+.+... ++|-.+-. . +. +| ..|
T Consensus 655 p~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~ 731 (830)
T COG1202 655 PSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEK 731 (830)
T ss_pred chHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHH
Confidence 999998888754333 567777777778888777666666655443 34432211 0 10 22 446
Q ss_pred HHHHHHHHHcC-------------------CCCCC-------------Ccch---hhHHHHHHhHHHHHHHHHHHHHHcC
Q 000324 1074 INVLLQAYISQ-------------------LKLEG-------------LSLT---SDMVFITQSAGRLLRALFEIVLKRG 1118 (1665)
Q Consensus 1074 ~~~Llqa~is~-------------------~~~~~-------------~~l~---~D~~~i~~~a~rl~~a~~ei~~~~g 1118 (1665)
...+.|.+++. +++++ |.+. +|..+-++++.|++.|.-.||...+
T Consensus 732 l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~ 811 (830)
T COG1202 732 LLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFK 811 (830)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677777773 12222 4443 7999999999999999999998877
Q ss_pred CHHHHHHHHHHHHHHHcc
Q 000324 1119 WAQLAEKALNLSKMVTKR 1136 (1665)
Q Consensus 1119 ~~~~a~~~l~L~k~i~~~ 1136 (1665)
--..+..+..|.+-|+.+
T Consensus 812 kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 812 KREVEAEAKALKKKIEEG 829 (830)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 777777888887776643
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=478.75 Aligned_cols=305 Identities=39% Similarity=0.667 Sum_probs=243.1
Q ss_pred cChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhccCCCCC-CCCCCChHHHH
Q 000324 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (1665)
Q Consensus 996 ~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~-~~~~~~~~~K~ 1074 (1665)
||++|+|||+|||++.||..|...+++.++..++|.++|.|.||+++++|++|+.+|.+|.+.+|+|+ ++.+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998 77899999999
Q ss_pred HHHHHHHHcCCCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHH
Q 000324 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (1665)
Q Consensus 1075 ~~Llqa~is~~~~~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~ 1154 (1665)
++||||||+|+++++++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||+||+|++.+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-CchhhccCChHHHhhhhc-CchhhHHHHHHHhcCCcceEEEEEeeccCce---EEEEEEEccCCccCCCC
Q 000324 1155 LMKLEKKDF-AWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (1665)
Q Consensus 1155 ~~~l~~~~~-~~~~l~~l~~~el~~ll~-~~~~~~~i~~~~~~~P~l~l~~~v~pit~~~---l~v~l~i~~~~~w~~~~ 1229 (1665)
+++|+++|+ +++++.++++++++.+++ .+++++++.+++++||++++++.++|++... ++|+|++++.+.|++++
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 999999995 999999999999999996 6789999999999999999999999998887 99999999999999999
Q ss_pred CCC-cccEEEEEEeCCCCeEEEEeeeee-eecccccceeEEEeeccC-CCCCCceEEEEeecccccccccccccc
Q 000324 1230 HGY-VEPFWVIVEDNDGEYILHHEYFML-KKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (1665)
Q Consensus 1230 h~~-~e~~wi~v~d~~~~~il~~~~~~l-~~~~~~~~~~~~f~vp~~-~p~p~~y~v~~vSD~wl~~e~~~~vs~ 1301 (1665)
|+. .+.||++|+|.++++|++++++.+ +++ ....+.++|++|.. .|.+++|.++++||+|+|++..++++|
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKK-SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS---EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhc-cCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 998 899999999999999999999999 332 35678999999985 555699999999999999999988765
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=415.69 Aligned_cols=336 Identities=22% Similarity=0.348 Sum_probs=281.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|++.|++||++++|.++.+.+ +|..|.||||||.+|.|||++.+...+ ..+.+++++|||+||.|+.+.|
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHHHHHHHHHHH
Confidence 4799999999999999998866 999999999999999999999998853 3589999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHh---hhccccEEEeChhh-HHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1665)
..+....|++|..+.|+.....+ ...++||+|+||++ ||++..... ..+..++++|+||||.+.| +|++.++.
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99888999999999999987654 34689999999999 588876554 5688999999999999998 68888887
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ecCCCcccc-ceEEEEeeecCchhHHHHHHHHHH
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVP-LSQQYIGIQVKKPLQRFQLMNDLC 723 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~-f~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1665)
|+..+ +...|.+++|||+| ..+.+.+++.+....-. ....|+.++ +.|+|..++.+.....+ .
T Consensus 228 ILk~i-------p~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL---V--- 292 (476)
T KOG0330|consen 228 ILKVI-------PRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL---V--- 292 (476)
T ss_pred HHHhc-------CccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH---H---
Confidence 77654 57899999999998 46777777766544332 334455554 66677766655332211 1
Q ss_pred HHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCC
Q 000324 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1665)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hag 803 (1665)
.+++...++++||||++...+..++-.|+..+..+.. +||.
T Consensus 293 --~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~-------------------------------------LhGq 333 (476)
T KOG0330|consen 293 --YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIP-------------------------------------LHGQ 333 (476)
T ss_pred --HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceec-------------------------------------ccch
Confidence 1333444789999999999999999999988766543 3999
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEE
Q 000324 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 804 m~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
|++..|.-.++.|++|...|||||++++||+|+|.+++||+ ||.|. +..||+||+||+||.| .+|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHcccccccC--CCcceE
Confidence 99999999999999999999999999999999999999999 99887 7889999999999999 899999
Q ss_pred EEeCCCcHHHHHHh---hcCCCc
Q 000324 884 IITGHSELRYYLSL---MNQQLP 903 (1665)
Q Consensus 884 il~~~~~~~~y~~l---l~~~~p 903 (1665)
.++++.+++.|.++ +...+|
T Consensus 402 tlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 402 TLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEehhhhHHHHHHHHHHhcCCC
Confidence 99999999888763 555554
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=442.07 Aligned_cols=661 Identities=23% Similarity=0.327 Sum_probs=449.4
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHHH--HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 000324 481 EMPEWAQPAF---KGMTQLNRVQSRVYK--SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (1665)
Q Consensus 481 ~Lp~~~~~~f---~g~~~l~~iQ~~~i~--~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ 555 (1665)
-+|+.....+ .|...+..+|.+|+. .++ +.+|+|.++||++|||+++.+-+++.+...+ .+++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~r----------r~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRR----------RNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHh----------hceeE
Confidence 4565555544 678899999999984 444 7789999999999999999999999887653 25899
Q ss_pred EcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 556 iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
+.|..+.+++....+..++...|+.|.+++|...... ..+...+.|||-||-..+.....+...+..+++||+||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 9999999999999999999999999999997665443 345678999999998776666655566788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEe-eecCchh
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-IQVKKPL 713 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-~~~~~~~ 713 (1665)
+| +||..+|.++++++..... ..+|+||||||+||..+++.||.+. .+...|||||+...... ......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~--~~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLE--TSVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhccc--cceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 7999999999999765433 3489999999999999999999854 56778999999876532 111111
Q ss_pred HHHHHHHHHH--H-------------HHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhcccccccccc-CchhHHH
Q 000324 714 QRFQLMNDLC--Y-------------EKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE-DSVSREI 776 (1665)
Q Consensus 714 ~~~~~~~~~~--~-------------~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~-~~~~~~~ 776 (1665)
.+...+..+. + ....+.. .+.++|||||+|+.|+.+|..+.........-..++.. +..+.-.
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 0111111111 0 1111222 25679999999999999997776654332111111100 0000000
Q ss_pred HHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCc
Q 000324 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1665)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~ 856 (1665)
........-+..|+..+++|++|||+|++.++|+.|+..|+.|.+.|++||+|++||||+|+.+|||..- ++..
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP-~~g~----- 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP-YVGR----- 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC-cccc-----
Confidence 1111223456789999999999999999999999999999999999999999999999999999999722 1221
Q ss_pred ccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCC-ccccchhH----hhHHHHHHHHHhccccChHHH
Q 000324 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVS----KLADQLNAEIVLGTVQNAKEA 931 (1665)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~-piES~l~~----~l~d~lnaeI~~g~i~~~~~~ 931 (1665)
..++..+|.||+|||||.|.|+.|.+++++...+...+..+++.++ |+-|++.. .+...+..-|+.|...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 3468899999999999999999999999999999888888888766 46666643 122345556777888899999
Q ss_pred HHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH-HHHhHcCCcc-cccCCCccccChHHHHHHHhcCC
Q 000324 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA-TILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (1665)
Q Consensus 932 ~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~-~~L~~~~~i~-~~~~~~~~~~T~lG~i~s~~yi~ 1009 (1665)
..+..+|+++.... |..-..+.+ ...+.. .+..+. ..+-+..+|. .........+|+||+..=.-.++
T Consensus 659 ~~~va~tl~s~q~~--~~~~~~~le-~~s~ql-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEK--PENVREQLE-MESDQL-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccc--hhhhhhccc-chhhhh-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 99999999876432 111111111 001100 001111 1222233333 11111122389999987666777
Q ss_pred HHHHHHHHHhcCCCCC----HHHHHHHhcCCccC-CCCcCChhHHHHHHHHhccCCCC------------------CCCC
Q 000324 1010 HGTISTYNEHLKPTMG----DIELCRLFSLSEEF-KYVTVRQDEKMELAKLLDRVPIP------------------VKES 1066 (1665)
Q Consensus 1010 ~~t~~~~~~~l~~~~~----~~~ll~~~s~s~Ef-~~i~~R~~E~~~l~~l~~~~~~~------------------~~~~ 1066 (1665)
|.-...+...|+..+. +..+ +++=.-.=| .. .+...-.+.-.+...+|-| +++.
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~l-h~lylvtP~~~~--~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gq 805 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSL-HLLYLVTPYLEV--MNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQ 805 (1008)
T ss_pred hhhhHHHHHHHHHhhhcccccccc-ceeeeecchHhh--cccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhcc
Confidence 6655544433332210 0000 100000000 00 0011111111122222211 0110
Q ss_pred ----CCCh----HHHHHHHHHHHHcCCCC----CCCcch-hhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000324 1067 ----LEEP----SAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (1665)
Q Consensus 1067 ----~~~~----~~K~~~Llqa~is~~~~----~~~~l~-~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i 1133 (1665)
..+. ..=+...||.+++..++ ++|... +=+...++++.+...++.-.|.+.+|.....-.-++-+.+
T Consensus 806 s~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl 885 (1008)
T KOG0950|consen 806 SVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRL 885 (1008)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 1111 22367789999999887 445444 4566788999999999999999999974444444567777
Q ss_pred HcccCCCCCcccccCCCCHHHHHHHHhCCC-CchhhccCChHHHhhhhc
Q 000324 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (1665)
Q Consensus 1134 ~~~~W~~~~pL~Q~~~i~~~~~~~l~~~~~-~~~~l~~l~~~el~~ll~ 1181 (1665)
..+.-.+..||.-+|++...++++|+.+|+ ++.+|..-++.++..-+.
T Consensus 886 ~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 886 SFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred hccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 788888899999999999999999999999 778888888888776553
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=469.74 Aligned_cols=414 Identities=23% Similarity=0.324 Sum_probs=294.7
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 480 ~~Lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
+.|++.++..| .+|..|||+|.++++.++.+ +|++++||||||||++|++|+++.+.......+ ...+.++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~--~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGREGE--LEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhccccC--CCCCeEEEEEcC
Confidence 44677777777 57889999999999997665 679999999999999999999998875321110 123678999999
Q ss_pred cHHHHHHHHHHHHHhh-----------ccC-CcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccc
Q 000324 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~-----------~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~ 623 (1665)
+|+|+.|+++++...+ ... +++|...+||.....+. ...++|+|||||+|..+.+.......+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766422 122 67899999998765542 24689999999999777765443346789
Q ss_pred eeEEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcccc----CceEEecCC-Ccc
Q 000324 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE----KGLFYFDNS-YRP 697 (1665)
Q Consensus 624 v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~----~~~~~f~~~-~rp 697 (1665)
+++|||||+|.+.+ .||..++.++.++.... ....|+|++|||++|.++++.|+..... ..+...... .++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999986 69999999999886643 4578999999999999999999975311 112222221 222
Q ss_pred ccceEEEEeeecCchhHHHHHHHHHHHHHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHH
Q 000324 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (1665)
Q Consensus 698 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~ 776 (1665)
..+.... ..... .......+...++..+.... ..+++||||+|++.|+.++..|.......
T Consensus 250 ~~i~v~~-p~~~l-~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~---------------- 311 (876)
T PRK13767 250 FDIKVIS-PVDDL-IHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE---------------- 311 (876)
T ss_pred ceEEEec-cCccc-cccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh----------------
Confidence 2221110 00000 00000111222233333322 26789999999999999999987643110
Q ss_pred HHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCc
Q 000324 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (1665)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~ 856 (1665)
....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |++|.
T Consensus 312 ---------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~--- 369 (876)
T PRK13767 312 ---------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK--- 369 (876)
T ss_pred ---------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC---
Confidence 12367999999999999999999999999999999999999999999999999 88776
Q ss_pred ccCCHHHHHhhhcccCCCCCCCceEEEEEeCC-CcH-HH--HHH-hhcC-CCc--cccchhHhhHHHHHHHHHhccccCh
Q 000324 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SEL-RY--YLS-LMNQ-QLP--IESQFVSKLADQLNAEIVLGTVQNA 928 (1665)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~~~-~~--y~~-ll~~-~~p--iES~l~~~l~d~lnaeI~~g~i~~~ 928 (1665)
|+.+|+||+|||||.+ +..+.+++++.. .+. +. +.+ .... ..| +...-...|..|+.+-++.+ .-+.
T Consensus 370 ---sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~ 444 (876)
T PRK13767 370 ---SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDI 444 (876)
T ss_pred ---CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCH
Confidence 8999999999999864 233344444433 332 21 111 1111 112 22233456788888866654 6689
Q ss_pred HHHHHHHHhhHHHHHh
Q 000324 929 KEACNWIGYTYLYIRM 944 (1665)
Q Consensus 929 ~~~~~wl~~t~~~~r~ 944 (1665)
+++.+|+..||.|+.+
T Consensus 445 ~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 445 EEAYNIVRRAYPYRDL 460 (876)
T ss_pred HHHHHHHhccCCcccC
Confidence 9999999999988753
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=444.38 Aligned_cols=346 Identities=34% Similarity=0.562 Sum_probs=296.6
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHH
Q 000324 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (1665)
Q Consensus 1304 l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~ 1383 (1665)
.+.|...|++ ...-..+.++.|. ...+.-|.+|..||.+|+.|||.+|+++.|.|||||||||||..|+|+||+.+.
T Consensus 76 ~~~P~s~~~~--~~~~k~~~isdld-~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 76 VKIPASVPMP--MDGEKLLSISDLD-DVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EecCccCCCc--cccccceeEEecc-hhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3455555554 2223333444443 244422335999999999999999999999999999999999999999999999
Q ss_pred hhc-----CCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhc
Q 000324 1384 KAS-----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458 (1665)
Q Consensus 1384 ~~~-----~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~ 1458 (1665)
+.. ..+..++|||+|++|||.++++.|.++|+. +|++|..+|||+......+..++|||+|||+|+.+.|+|..
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~-~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP-LGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhccc-ccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 631 233469999999999999999999999875 58999999999988766688999999999999999998765
Q ss_pred c-ccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhccc-CCcEEecCCCCC
Q 000324 1459 R-KYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVR 1536 (1665)
Q Consensus 1459 ~-~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~-~~~~~~f~~~~r 1536 (1665)
. ..++.|+||||||+|++-+++||++|.++.|+....+.....+|+||||||+||..|+|.||++. ..++|.|....|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 3 35678999999999999999999999999999988888888999999999999999999999997 468999999999
Q ss_pred ccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccc
Q 000324 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (1665)
Q Consensus 1537 pv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (1665)
|+|++.++.|............+....+..+.+.+..+.+++|||.+|..+..+|+.|...+...+.... |+.
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~-f~~------ 384 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL-FLP------ 384 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc-cCC------
Confidence 9999999999888866666777888889999999999999999999999999999999887765554433 432
Q ss_pred hhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.-.++.|+++...|+++||+||..+||..+++.|+.|.++||||
T Consensus 385 -----~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 385 -----SPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred -----ChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 22667899999999999999999999999999999999999999
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=438.32 Aligned_cols=450 Identities=23% Similarity=0.306 Sum_probs=333.2
Q ss_pred cCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc
Q 000324 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1665)
Q Consensus 479 i~~Lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (1665)
.+.|++++++.| ..|.+|||.|.++++.+.. ++|+||+||||||||.+|.||++..+..... ....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~---~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGK---GKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccC---CCCCCceEEEEeC
Confidence 456889999999 4599999999999999885 5789999999999999999999999987621 1122468999999
Q ss_pred ccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 558 P~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|.|||.+++.+++...+..+|+.|..-+||++...++ .+.+||+|||||.+..++-...-+..+.+|+++||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999876543 3578999999999977766555567899999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+.+ .||..+...+.|+.... + ..|.||||||+.+++++++||........+.-.+..++..+.............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~---~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~ 236 (814)
T COG1201 161 LAESKRGVQLALSLERLRELA---G-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDE 236 (814)
T ss_pred hhccccchhhhhhHHHHHhhC---c-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCcccccc
Confidence 986 79999999999986542 2 889999999999999999999876311122222222222222111111100011
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.....+...+++.+.+ ...+|||+|||..|+.++..|...+.
T Consensus 237 ~~~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~----------------------------------- 278 (814)
T COG1201 237 ELWAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGP----------------------------------- 278 (814)
T ss_pred chhHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcC-----------------------------------
Confidence 1112222233333332 34799999999999999999887642
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+..|||+++++.|..+|+.|++|.++++|||++++-|||+-+++.||+ |+.|. |+..++||+||+|+
T Consensus 279 -~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsgH 347 (814)
T COG1201 279 -DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAGH 347 (814)
T ss_pred -CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhcccccc
Confidence 35899999999999999999999999999999999999999999999999 88887 89999999999998
Q ss_pred CCCCCceEEEEEeCCCcHHHHHH------hhc---CCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000324 874 PQYDSYGEGIIITGHSELRYYLS------LMN---QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~------ll~---~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~ 944 (1665)
+.+...++++++.+ ..+.++. ... +..++.-.-...|..++.+.+... .-+.+++.+.+..+|.|+.+
T Consensus 348 -r~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L 424 (814)
T COG1201 348 -RLGEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADL 424 (814)
T ss_pred -ccCCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccC
Confidence 35677889999887 2222221 111 133444555567888888877777 77888888888888876532
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH--cCCcccccCC-CccccChHHHHHHHhcCCHHHH
Q 000324 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR--NNLVKYDRKS-GYFQVTDLGRIASYYYISHGTI 1013 (1665)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~--~~~i~~~~~~-~~~~~T~lG~i~s~~yi~~~t~ 1013 (1665)
+. +-..+.++.|.. ...++...+. |.+ +.-.....+||....|+
T Consensus 425 ---------~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 425 ---------SR--------------EDFRLVLRYLAGEKNVYAKIWLDEDGLF--GRGKGTRMIYYMNYGTI 471 (814)
T ss_pred ---------CH--------------HHHHHHHHHHhhcccceeEEeecCccee--ccCccceeeeeeccccc
Confidence 21 223556777777 6666554322 322 33233445555555543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=452.63 Aligned_cols=356 Identities=21% Similarity=0.219 Sum_probs=271.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++.+..++ .||+.|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4677777777 68999999999999998766 5699999999999999999999998653 2468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh--hccccEEEeChhhHH-HHHhhc-CCCccccceeEEEEecccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWD-IITRKS-GDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~--~~~~~IiV~TPekld-~l~r~~-~~~~~l~~v~liIiDEaH~ 634 (1665)
|||||.|++..++++. ..++++..++|+.....+. ..+++|+|+||+.+. .+++.. ....+++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999999865 4578999999998765432 356899999999874 222211 1113578999999999999
Q ss_pred cccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeec-----
Q 000324 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (1665)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (1665)
+.+.+|..+..++.|+.+.....+.++|+|++|||++|..+++.++...+ ...++.+..|.......+....
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP---VVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEEECCCCCCcCceEEEEecCCccccc
Confidence 98789999999999998887777788999999999999988887765443 3334444444332222111111
Q ss_pred -Cc--hhHH--HHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhcc
Q 000324 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (1665)
Q Consensus 710 -~~--~~~~--~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 784 (1665)
.. ...+ .......+...+. .+.++||||+||+.|+.++..|........
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 0111112222221 267999999999999999998876431110
Q ss_pred ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHH
Q 000324 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1665)
Q Consensus 785 ~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~ 864 (1665)
..+..++..|||||++++|..+++.|++|.+++||||+++++|||+|++++||+ |+.|. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012345788999999999999999999999999999999999999999999999 88876 89999
Q ss_pred HhhhcccCCCCCCCceEEEEEeCCCcHHHH
Q 000324 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1665)
+||+|||||.| ..|.++++++.+..+.|
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d~~ 391 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLDTY 391 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHHHH
Confidence 99999999988 67999999886544433
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=420.05 Aligned_cols=401 Identities=27% Similarity=0.371 Sum_probs=312.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.+-.+|++||-.+ ..+++|+|.|+|.||||++|+.||.-.-.+ ..|+||.+|.|||.+|.+++|+..|
T Consensus 297 elD~FQk~Ai~~l-erg~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHH-HcCCeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 7889999999875 455779999999999999999998755332 4589999999999999999999988
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (1665)
.. |+.+|||.+++. ++.++|+|.|-|..++-+.. ..++++.+||+||+|.+.| +||.++|.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 64 559999999876 58899999998865555554 3678899999999999999 899999988753
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc------------------hhH-
Q 000324 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK------------------PLQ- 714 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~------------------~~~- 714 (1665)
.+.++++|+||||+||..+++.|+|-...+.+++....-|||||+.++..-.... ...
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 5889999999999999999999999887788888888899999998664311000 000
Q ss_pred ---HHH------------------------H--------H-HH--HHHHHHHHHhC---CCeEEEEecChhHHHHHHHHH
Q 000324 715 ---RFQ------------------------L--------M-ND--LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 715 ---~~~------------------------~--------~-~~--~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (1665)
++. . - .. ..|-.+..+.. --|++|||-||+.|...|+.|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 000 0 0 00 12222333332 348999999999999999999
Q ss_pred HHHhhhccccccccccCchhH-HH-HHhhhhcc--------ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCe
Q 000324 754 RDTALENDTLGRFLKEDSVSR-EI-LQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~-~~-l~~~~~~~--------~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~V 823 (1665)
......... ..+. .. +.+..... +--.+.+++..|+++||||+-+--++.|+-+|..|-++|
T Consensus 588 ~~~nL~~~~--------EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 588 TNLNLTDSK--------EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred hccCcccch--------hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 876443211 1111 11 11111111 223578899999999999999999999999999999999
Q ss_pred EEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCC--cHHHHHHh-hcC
Q 000324 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQ 900 (1665)
Q Consensus 824 LVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~l-l~~ 900 (1665)
|+||-|+|+|||+|+.+||+.+.+..|+.. +.++.+-+|.||+|||||.|.|..|.+|+++... ....+..+ +..
T Consensus 660 LFATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 660 LFATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGG 737 (1248)
T ss_pred EeehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCC
Confidence 999999999999999999999999998765 7899999999999999999999999999999874 56666665 678
Q ss_pred CCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhH
Q 000324 901 QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939 (1665)
Q Consensus 901 ~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~ 939 (1665)
+.+++|||.-.....||---+.. -.+-+.++++|
T Consensus 738 ~~~L~SQFRlTY~MILnLLRve~-----lrvEdm~krSf 771 (1248)
T KOG0947|consen 738 PTRLESQFRLTYGMILNLLRVEA-----LRVEDMMKRSF 771 (1248)
T ss_pred CchhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 89999999887666666432221 24455666776
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=413.85 Aligned_cols=345 Identities=21% Similarity=0.298 Sum_probs=263.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++....++ .||..|+|||.++++.++.+.+ ++..|.||||||++|++|++.++...... ....+++.+|+++||
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~--~~~~~~P~vLVL~PT 174 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGK--LSRGDGPIVLVLAPT 174 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhcccc--ccCCCCCeEEEEcCc
Confidence 344444444 7999999999999999999866 99999999999999999999999863111 112357899999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
|+||.|+.+.+.++...+++++.+++|+.+...|.. ...+|+|+||+++ |.+..... .++++.++|+||||.|
T Consensus 175 RELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~---~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 175 RELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSL---NLSRVTYLVLDEADRM 251 (519)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCc---cccceeEEEeccHHhh
Confidence 999999999999998888899999999999887643 4689999999997 66655543 6789999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCCCc-cccceEEEEeeecCc
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKK 711 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~-~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~ 711 (1665)
.| ++.+.++.|+.++ .++..|+++.|||.|. ...++ .|+. ++..-.+....... ...+.|....+.
T Consensus 252 ldmGFe~qI~~Il~~i------~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~--- 321 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQI------PRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD--- 321 (519)
T ss_pred hccccHHHHHHHHHhc------CCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC---
Confidence 99 7999988888765 2344489999999985 33333 4444 43211111110111 111222211122
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
...+...+..+ ...+. ...++++||||+|++.|.+++..|...+
T Consensus 322 ~~~K~~~l~~l-L~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~---------------------------------- 365 (519)
T KOG0331|consen 322 ETAKLRKLGKL-LEDIS-SDSEGKVIIFCETKRTCDELARNLRRKG---------------------------------- 365 (519)
T ss_pred HHHHHHHHHHH-HHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcC----------------------------------
Confidence 11122222221 11121 2236799999999999999999988754
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
++...+||..++.+|..+++.|++|...|||||+++|+|+|+|+|++||+ ||+|. ++.+|+||+||+
T Consensus 366 ---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGRT 432 (519)
T KOG0331|consen 366 ---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGRT 432 (519)
T ss_pred ---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCcc
Confidence 23456699999999999999999999999999999999999999999999 99998 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHH
Q 000324 872 GRPQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~ 893 (1665)
||.| ..|.++.+.+..+...
T Consensus 433 GRa~--~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 433 GRAG--KKGTAITFFTSDNAKL 452 (519)
T ss_pred ccCC--CCceEEEEEeHHHHHH
Confidence 9987 8999999999876544
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=427.54 Aligned_cols=345 Identities=19% Similarity=0.274 Sum_probs=261.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++++...+ .||..||++|.++++.++.+. |+|++||||||||++|++|+++.+....... ......++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEEEEeC
Confidence 3566666666 789999999999999998764 5999999999999999999999986542210 1123468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
|++||.|+++.+..+....++++..++|+.+.+.+. ...++|+|+||++|..+..... ..++.+++|||||||++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888899999999998876543 2478999999999754444332 35788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
.+ .+...+..++. ..+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLA-------KLPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHH-------hCCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 45555544443 34567899999999986 4566655544431 122222222222344443332221
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.+...+ ..+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~l-----~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKRELL-----SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHHH-----HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 111111 122333345799999999999999999886543
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |++|. +..+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 23577899999999999999999999999999999999999999999999 99886 88999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHH
Q 000324 874 PQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
.| ..|.|++++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 88 779999998887755443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=432.80 Aligned_cols=346 Identities=21% Similarity=0.272 Sum_probs=259.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.||+.+...+ .||..|||+|.++++.++.+ +|++++||||||||++|++|++..+...... ......++++||++|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeC
Confidence 3677777777 68999999999999999876 5699999999999999999999887643211 111124679999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
||+||.|+.+.++.+.+..++++..++|+.....+. ..+++|+|+||++| +.+.++ ...++++++|||||||+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHH
Confidence 999999999999888777788888888887665542 34689999999998 555444 24678999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCcccc-ceEEEEeeecCc
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (1665)
|.+ ++.+.+..++.. -+..|++++|||+++ .+.++.++..++ ..+.+....++.. +.+.+..+....
T Consensus 282 ml~~gf~~~i~~i~~~--------l~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQA--------LSQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHh--------CCCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 987 455554444332 246799999999986 345565554432 2333343344432 233333332221
Q ss_pred hhHHHHHHHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (1665)
+... +++.+..... ..++||||+++..+..++..|....
T Consensus 352 ---k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 1111 2222222111 4689999999999999888775421
Q ss_pred hhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcc
Q 000324 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1665)
Q Consensus 791 ~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GR 870 (1665)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||+|. ++.+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 123677899999999999999999999999999999999999999999999 99886 89999999999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHHH
Q 000324 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
|||.| ..|.++++++.++...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99988 7899999999877655443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=426.85 Aligned_cols=336 Identities=21% Similarity=0.320 Sum_probs=261.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++++...+ .||.+|||+|.++++.++.+. |++++||||||||++|++|+++.+.... ...+++|++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~Pt 81 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPT 81 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCC
Confidence 566666665 689999999999999998875 5999999999999999999999885431 24579999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
++||.|+++.++...... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADRM 159 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHHH
Confidence 999999999998876544 78999999998875542 3478999999999855555432 45788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
.+ ++...++.++.. .+...|++++|||+|+ ...++..+...+ ..+.+........+.+.++.+....
T Consensus 160 l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~i~~~~~~~~~~~-- 228 (460)
T PRK11776 160 LDMGFQDAIDAIIRQ-------APARRQTLLFSATYPEGIAAISQRFQRDP--VEVKVESTHDLPAIEQRFYEVSPDE-- 228 (460)
T ss_pred hCcCcHHHHHHHHHh-------CCcccEEEEEEecCcHHHHHHHHHhcCCC--EEEEECcCCCCCCeeEEEEEeCcHH--
Confidence 87 567766666554 4667899999999985 233333332222 1233333333344666666544322
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
+...+.. ++......++||||+|++.+..++..|...+
T Consensus 229 -k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~------------------------------------ 266 (460)
T PRK11776 229 -RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG------------------------------------ 266 (460)
T ss_pred -HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2332222 2233446789999999999999999987643
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+|||||
T Consensus 267 -~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtGR 335 (460)
T PRK11776 267 -FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTGR 335 (460)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhcccccC
Confidence 34678899999999999999999999999999999999999999999999 88775 78899999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHH
Q 000324 874 PQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y 894 (1665)
.| ..|.|+.++++.+...+
T Consensus 336 ~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 336 AG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred CC--CcceEEEEEchhHHHHH
Confidence 88 77999999998775543
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=422.40 Aligned_cols=345 Identities=15% Similarity=0.205 Sum_probs=255.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++++...+ .||..|+|+|+++++.++.+. |++++||||||||++|++|+++.+.......+ ....++++||++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECCc
Confidence 566666666 689999999999999998775 59999999999999999999998876432111 11235799999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++||.|+++.+..+....|+++..++|+.....+. ..+++|+|+||+++..+.+... ..++++++|||||||++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~--~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH--INLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cccccccEEEEecHHHHh
Confidence 99999999999998888899999999987765432 2468999999999744444332 457889999999999998
Q ss_pred c-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH-HHH-HHHhccccCceEEecCCC-ccccceEEEEeeecCch
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE-DVA-LFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKKP 712 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~-dv~-~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~~ 712 (1665)
+ ++...++.++.++ . .....+.+++|||++... .+. .++. ++ ..+...+.. ....+.+.++... .
T Consensus 171 ~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~~~~~~~~~~~~-~p--~~i~v~~~~~~~~~i~~~~~~~~---~ 239 (423)
T PRK04837 171 DLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSYRVRELAFEHMN-NP--EYVEVEPEQKTGHRIKEELFYPS---N 239 (423)
T ss_pred hcccHHHHHHHHHhC----C-CccceeEEEEeccCCHHHHHHHHHHCC-CC--EEEEEcCCCcCCCceeEEEEeCC---H
Confidence 7 5655655554433 1 123456789999998521 221 2222 11 112222221 1222333322111 1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhh
Q 000324 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (1665)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (1665)
..+...+. . +.......++||||+++..|..++..|...+
T Consensus 240 ~~k~~~l~----~-ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g----------------------------------- 279 (423)
T PRK04837 240 EEKMRLLQ----T-LIEEEWPDRAIIFANTKHRCEEIWGHLAADG----------------------------------- 279 (423)
T ss_pred HHHHHHHH----H-HHHhcCCCeEEEEECCHHHHHHHHHHHHhCC-----------------------------------
Confidence 12222221 2 2222336799999999999999999887543
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 793 l~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
+.+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||+|. +..+|+||+||||
T Consensus 280 --~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~g 347 (423)
T PRK04837 280 --HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRTG 347 (423)
T ss_pred --CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEecccccc
Confidence 34788899999999999999999999999999999999999999999999 88886 8899999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHH
Q 000324 873 RPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|.| ..|.|+.|.++.+...+.
T Consensus 348 R~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 348 RAG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CCC--CCeeEEEEeCHHHHHHHH
Confidence 998 789999999887654443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=428.89 Aligned_cols=344 Identities=17% Similarity=0.238 Sum_probs=259.1
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.+|+++...+ .||.+|+|+|.+++|.++.+. ++|++||||||||++|++|++..+....... ...++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~---~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPAIVHINAQPLLR---YGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEEeCCCChHHHHHHHHHHHHHHhccccc---CCCCcEEEEECC
Confidence 4678777777 689999999999999998875 5999999999999999999998876532110 123578999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
||+||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++..++.... ..+.++++|||||||++
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~--~~l~~v~~lViDEAd~m 289 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV--TNLRRVTYLVLDEADRM 289 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC--CChhhCcEEEeehHHhh
Confidence 999999999999998777789999999988765442 3478999999999743333332 46788999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCc---cccceEEEEeeecC
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQVK 710 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~~ 710 (1665)
.+ ++.+.+..++.. ..+..|++++|||+|. .+.++..+... ..+........ ...+.+.+..+...
T Consensus 290 ld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 290 LDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEEH 360 (545)
T ss_pred hhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEech
Confidence 87 566666555543 3567899999999985 33444443321 11211111111 11233444333322
Q ss_pred chhHHHHHHHHHHHHHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 711 KPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 711 ~~~~~~~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
. +...+..+ +.... ...++||||++++.|..++..|...+
T Consensus 361 ~---k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g-------------------------------- 401 (545)
T PTZ00110 361 E---KRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDG-------------------------------- 401 (545)
T ss_pred h---HHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcC--------------------------------
Confidence 1 22222222 11222 46799999999999999999887543
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||+|. ++.+|+||+|
T Consensus 402 -----~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRiG 466 (545)
T PTZ00110 402 -----WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRIG 466 (545)
T ss_pred -----CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHhc
Confidence 23466799999999999999999999999999999999999999999999 99887 8999999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
||||.| ..|.|++++++.+.....
T Consensus 467 RtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 467 RTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred ccccCC--CCceEEEEECcchHHHHH
Confidence 999988 789999999987765443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=394.12 Aligned_cols=339 Identities=22% Similarity=0.346 Sum_probs=273.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
||..|+|||..+||.++.+.+ ++.||-||||||.+|++|+|..+.-.+.. ....++|+++|||+|+.|++...+
T Consensus 200 Gy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~~ 273 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVTK 273 (691)
T ss_pred CCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHHH
Confidence 999999999999999999877 99999999999999999999988654322 235689999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
++.....|.|+.+.||.++..+. ...++|+|+||++| |++ |++.. ..++++.++|+|||++|++ .|...+..|
T Consensus 274 qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHl-rNs~s-f~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 274 QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHL-RNSPS-FNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHh-ccCCC-ccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 99888899999999999987764 36899999999997 555 44433 5789999999999999987 465555554
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEe--cCCCccccceEEEEeeecCchhHHHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1665)
+. ..+.+.|.++||||++ +.|.........+++-.| .+..++..|.|.|+.+.......+-..+..+
T Consensus 352 i~-------lcpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l-- 420 (691)
T KOG0338|consen 352 IR-------LCPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL-- 420 (691)
T ss_pred HH-------hccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH--
Confidence 43 3577899999999997 455555555544554443 4455666788888877765443332222221
Q ss_pred HHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC
Q 000324 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1665)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm 804 (1665)
+.... ...+||||.|++.|.++--.|--.+.. ++-+||.|
T Consensus 421 --~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~-------------------------------------agElHGsL 460 (691)
T KOG0338|consen 421 --ITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLK-------------------------------------AGELHGSL 460 (691)
T ss_pred --HHHhc-ccceEEEEehHHHHHHHHHHHHHhhch-------------------------------------hhhhcccc
Confidence 22222 467999999999999887766555433 44559999
Q ss_pred CHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 805 ~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
++.+|...++.|+++.++|||||++++||+|++++.+||+ |+.|. +...|+||+||+.|+| +.|.+|.
T Consensus 461 tQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsVt 528 (691)
T KOG0338|consen 461 TQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSVT 528 (691)
T ss_pred cHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceEE
Confidence 9999999999999999999999999999999999999999 98887 8999999999999998 8899999
Q ss_pred EeCCCcHHHHHHhhcCC
Q 000324 885 ITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 885 l~~~~~~~~y~~ll~~~ 901 (1665)
++..++...++..+...
T Consensus 529 lvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 529 LVGESDRKLLKEIIKSS 545 (691)
T ss_pred EeccccHHHHHHHHhhh
Confidence 99999888777666553
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=408.59 Aligned_cols=404 Identities=26% Similarity=0.386 Sum_probs=313.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
+|-|+|+.++.+ +..++++||+|-|.+|||.+|..+|...+.. +.++||..|.|||.+|.|+++...|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----------kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----------KQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHh-----------cCeEEeeChhhhhcchhHHHHHHHh
Confidence 788999999986 5777899999999999999999999999865 3489999999999999999998877
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (1665)
+ .|+..|||..++. .+.-+|+|.|-|..++-+.. ..+..|.+||+||+|.|-| +||.++|.-+--
T Consensus 197 ~----DVGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 K----DVGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred c----ccceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 6 5889999999876 47789999998865555544 4678899999999999999 899999865432
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEe---------eecCchh--HHH-HHHHH
Q 000324 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~~~~ 721 (1665)
++.++|.|+||||+||+.++|+|+..-...++.++...|||.||+++++. ++++... ..+ .+|..
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 58899999999999999999999987777889999999999999877543 2222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHh--CCCeEEEEecChhHHHHHHHHHHHHhhhcccccccccc
Q 000324 722 ------------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (1665)
Q Consensus 722 ------------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~ 769 (1665)
-+|..+.... ...|+|||+-|+++|+..|..+.+...+.+.-.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk----- 414 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK----- 414 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH-----
Confidence 1222222222 246999999999999999999887765532110
Q ss_pred CchhHHHHHhhhhcc--------ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEE
Q 000324 770 DSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (1665)
Q Consensus 770 ~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (1665)
..-.++........ +-..+-.++..|||+||+||-+--++.|+-+|.+|.++||+||-|++.|+|.||.+|
T Consensus 415 -~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 415 -ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred -HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 11112222222222 223455678899999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH-HHHHHhh-cCCCccccchhHhhHHHHHHH
Q 000324 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-RYYLSLM-NQQLPIESQFVSKLADQLNAE 919 (1665)
Q Consensus 842 VI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~-~~y~~ll-~~~~piES~l~~~l~d~lnae 919 (1665)
|+.....||+.. +.|+|.-+|+||.|||||.|.|..|.+|++.+..-- +.-..++ ++.-|+-|.|+-.....||--
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 999989999886 667899999999999999999999999999988543 3444444 556789999988777777765
Q ss_pred HHhccccChHHHHHHHHhhHH
Q 000324 920 IVLGTVQNAKEACNWIGYTYL 940 (1665)
Q Consensus 920 I~~g~i~~~~~~~~wl~~t~~ 940 (1665)
-+.|.- . -..|..+|+
T Consensus 572 RvEei~--p---e~~l~~SF~ 587 (1041)
T KOG0948|consen 572 RVEEIS--P---EYMLERSFH 587 (1041)
T ss_pred HHccCC--H---HHHHHHHHH
Confidence 554431 1 234555655
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=425.60 Aligned_cols=345 Identities=15% Similarity=0.208 Sum_probs=256.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++++...+ .||..|||+|.++|+.++.+.+ ++++||||||||++|++|+++.+....... ......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceEEEEeCc
Confidence 566666666 7899999999999999988754 999999999999999999999886532110 001125789999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++||.|+++.+.++....++++..++|+.....+. ...++|||+||++|..+.+... ...+..+++|||||||++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999998766542 2467999999999744444322 1347789999999999998
Q ss_pred c-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HH-HHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-ED-VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~-~d-v~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+ .+...++.++.++. .....|++++|||+++. .. ...++.. + ..+...........+.+.++... ..
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~~v~~l~~~~l~~-p-~~i~v~~~~~~~~~i~q~~~~~~---~~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSHRVLELAYEHMNE-P-EKLVVETETITAARVRQRIYFPA---DE 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccHHHHHHHHHHhcC-C-cEEEeccccccccceeEEEEecC---HH
Confidence 7 56666666655442 12367999999999852 12 2233322 1 11222122222233344433222 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.+...+. .++....+.++||||+|+..++.++..|...+
T Consensus 243 ~k~~~L~-----~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLLL-----GLLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHHH-----HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 2222211 12233346799999999999999999887543
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 34788999999999999999999999999999999999999999999999 88775 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHH
Q 000324 874 PQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~ 893 (1665)
.| ..|.|++++++.+...
T Consensus 351 ~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 351 LG--EEGDAISFACERYAMS 368 (572)
T ss_pred CC--CCceEEEEecHHHHHH
Confidence 98 6899999998765443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=416.21 Aligned_cols=343 Identities=22% Similarity=0.283 Sum_probs=261.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++.+...+ .||..|+++|.++++.++++. +++++||||+|||++|++|+++.+....... ....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~----~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRRK----SGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhccccC----CCCceEEEECC
Confidence 3566666676 789999999999999999875 5999999999999999999999887542211 13568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l 635 (1665)
|++||.|+++.+..+....++++..++|+.....+. ...++|+|+||+++..+..+.. ..++.+++|||||||++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~--~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN--FDCRAVETLILDEADRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--cCcccCCEEEEECHHHH
Confidence 999999999999998888899999999998765542 3468999999999743433322 34678999999999999
Q ss_pred cc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccc-cceEEEEeeecCc
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKK 711 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~ 711 (1665)
.+ +++..++.+... .+...|+++||||++. ..++..++...+. .+...+..+.. .+.+.+.....
T Consensus 160 l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~~-- 228 (434)
T PRK11192 160 LDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRADD-- 228 (434)
T ss_pred hCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEeCC--
Confidence 87 577777665543 3456799999999974 4566666654431 12222222221 22233222211
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
...+... +. .+.......++||||+++..+..++..|...+
T Consensus 229 ~~~k~~~----l~-~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------- 269 (434)
T PRK11192 229 LEHKTAL----LC-HLLKQPEVTRSIVFVRTRERVHELAGWLRKAG---------------------------------- 269 (434)
T ss_pred HHHHHHH----HH-HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC----------------------------------
Confidence 1112221 22 22333346799999999999999999887632
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |..+|+||+|||
T Consensus 270 ---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR~ 336 (434)
T PRK11192 270 ---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGRT 336 (434)
T ss_pred ---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhccccc
Confidence 23678899999999999999999999999999999999999999999999 88876 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHHHH
Q 000324 872 GRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
||.| ..|.|+++++..+...+.
T Consensus 337 gR~g--~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 337 GRAG--RKGTAISLVEAHDHLLLG 358 (434)
T ss_pred ccCC--CCceEEEEecHHHHHHHH
Confidence 9987 779999999876655443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=421.85 Aligned_cols=327 Identities=21% Similarity=0.274 Sum_probs=246.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|+..|+|+|.++|+.++.+.+ +|+++|||+|||+||++|++.. ...+|||+|+++|+.+++..+
T Consensus 456 FG~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHH
Confidence 3899999999999999988755 9999999999999999999853 236999999999999887776
Q ss_pred HHhhccCCcEEEEEECCCcccHhh-----h----ccccEEEeChhhH---HHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ-----I----EETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~-----~----~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
.. .|+.+..+.|+.....+. . ...+|+|+|||++ +.+.+..........+.+|||||||++.+
T Consensus 521 ~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqW 596 (1195)
T PLN03137 521 LQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQW 596 (1195)
T ss_pred Hh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhc
Confidence 54 489999999988765432 1 4679999999997 34454433222345589999999999976
Q ss_pred --CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 638 --~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
++.+.+..+ ..+ ....+.+++++||||++. .+++...|+.. . ...|..++....+. |..+. +. .
T Consensus 597 GhDFRpdYr~L-~~L----r~~fp~vPilALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~--y~Vv~-k~-k 664 (1195)
T PLN03137 597 GHDFRPDYQGL-GIL----KQKFPNIPVLALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLW--YSVVP-KT-K 664 (1195)
T ss_pred ccchHHHHHHH-HHH----HHhCCCCCeEEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceE--EEEec-cc-h
Confidence 255555432 111 123457889999999985 45677777643 2 23344443332332 22122 11 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
..... +...+.....+.+.||||+||++|+.++..|...+
T Consensus 665 k~le~----L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G------------------------------------ 704 (1195)
T PLN03137 665 KCLED----IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG------------------------------------ 704 (1195)
T ss_pred hHHHH----HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC------------------------------------
Confidence 11111 22222222235679999999999999999987643
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..+++|||||++.+|..+++.|..|.++|||||++++||||+|+|++||+ |+.|. |+.+|+||+|||||
T Consensus 705 -ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGR 773 (1195)
T PLN03137 705 -HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGR 773 (1195)
T ss_pred -CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCC
Confidence 34678899999999999999999999999999999999999999999999 99887 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000324 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1665)
.| ..|.|+++++..+...+..++.+.
T Consensus 774 DG--~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 774 DG--QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred CC--CCceEEEEecHHHHHHHHHHHhcc
Confidence 98 789999999988877777776543
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=387.80 Aligned_cols=350 Identities=21% Similarity=0.329 Sum_probs=274.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|.+...+++ .||.++|++|+++++.++.+. ++++.|-||+|||++|++|+++.+.+.+... ..+..+++|+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~~~~vlIi~PT 163 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RNGTGVLIICPT 163 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccCC----CCCeeEEEeccc
Confidence 444555555 799999999999999999887 5999999999999999999999998765432 257789999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|+||.|++...+++++.. ++.|+.+.|+....... ...++|+|+||++| |++.+... ....+++++|+||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchh
Confidence 999999999999999877 89999999999876542 34899999999997 66666555 5667789999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEE-ecCCCccc---cceEEEEeee
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFY-FDNSYRPV---PLSQQYIGIQ 708 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~-~~~~-f~~~~rpv---~l~~~~~~~~ 708 (1665)
+++ +|...++.|+.-+ +...|.+++|||.|. .|.+..+..... .+|. ......+. .+.|-|+..+
T Consensus 242 lLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~~--kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQPS--KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred hhhcccHHHHHHHHHhc-------cccceeeEeeCCCcH--HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999 7877777777643 678899999999985 333333332222 2222 22222222 3445444333
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccch
Q 000324 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (1665)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (1665)
.. .++. .+|..+.++....++||||+|...+...+..|.....
T Consensus 313 ~~---~~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dl------------------------------ 355 (543)
T KOG0342|consen 313 SD---SRFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDL------------------------------ 355 (543)
T ss_pred cc---chHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCC------------------------------
Confidence 22 2222 3455556666568999999999999999988874332
Q ss_pred hhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhh
Q 000324 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (1665)
Q Consensus 789 l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~ 868 (1665)
.|..+||++++..|..+...|++.+--|||||+++|||+|+|+|++||+ |++|+ .+.+|+||+
T Consensus 356 -------pv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRv 418 (543)
T KOG0342|consen 356 -------PVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRV 418 (543)
T ss_pred -------chhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHh
Confidence 2444599999999999999999999999999999999999999999999 99998 899999999
Q ss_pred cccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccc
Q 000324 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIE 905 (1665)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piE 905 (1665)
||+||.| +.|+++++..++++.++..+- .+|++
T Consensus 419 GRTaR~g--k~G~alL~l~p~El~Flr~LK--~lpl~ 451 (543)
T KOG0342|consen 419 GRTAREG--KEGKALLLLAPWELGFLRYLK--KLPLE 451 (543)
T ss_pred ccccccC--CCceEEEEeChhHHHHHHHHh--hCCCc
Confidence 9999977 899999999999987765543 45544
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=442.18 Aligned_cols=400 Identities=21% Similarity=0.273 Sum_probs=267.7
Q ss_pred EEccCCCchHHHHHHHHHHHHHhcCCCC--CCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc------------cCCcEE
Q 000324 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (1665)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~--g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~------------~~gi~V 581 (1665)
|+||||||||++|.||++..+....... +.-..++.++|||+|+|+|+.|++++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542110 00012357999999999999999999875221 247999
Q ss_pred EEEECCCcccHhh--h-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHHHhhc
Q 000324 582 RELSGDQTLTRQQ--I-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (1665)
Q Consensus 582 ~~ltGd~~~~~~~--~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~ 657 (1665)
+..+||++...+. . ..++|+|||||+|+.++... ....++++++|||||+|.+.+ .||..++.++.|+... .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999877643 2 47899999999997665432 235789999999999999987 5999999999998764 3
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh-------------HHHHHHHHHHH
Q 000324 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------------QRFQLMNDLCY 724 (1665)
Q Consensus 658 ~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~-------------~~~~~~~~~~~ 724 (1665)
+.+.|+|+||||++|.+++++||+......+ +..+..++.++...+ ........ .+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~I-v~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTV-VNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEE-ECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHH
Confidence 4678999999999999999999986422222 224445555554322 11110000 00111111122
Q ss_pred HHHHH-HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhh---hhcCCcEEEe
Q 000324 725 EKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK---DLLPYGFAIH 800 (1665)
Q Consensus 725 ~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~---~ll~~gv~~~ 800 (1665)
..+.. ....+++|||||||+.|+.++..|.+....... ........ ........+.... ......+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQ------RSPSIAVD-AAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcc------ccccccch-hhhhhhccccchhccccccceeeeec
Confidence 22222 223679999999999999999999875321100 00000000 0000000011111 1112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCce
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+.|. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999999 77665 899999999999996 45677
Q ss_pred EEEEEeCCCcHHH------HHHhhcCC-Cccc--cchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHH
Q 000324 881 EGIIITGHSELRY------YLSLMNQQ-LPIE--SQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (1665)
Q Consensus 881 ~~iil~~~~~~~~------y~~ll~~~-~piE--S~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~ 941 (1665)
.++++..+.. +. ...++... .|+. .+-...|..|+.+.++.+.+ +.++..+.+..+|.|
T Consensus 377 ~gli~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCc
Confidence 7886665422 21 12233222 1222 22234677777777776543 356666655555443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=418.16 Aligned_cols=340 Identities=22% Similarity=0.354 Sum_probs=268.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|.+++.+.+ .||..|+|||.+++|.++.+.+ ++++|+||||||.+|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 445555555 6999999999999999999855 99999999999999999999997642111 01119999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh--h-ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ--I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~--~-~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|+||.|+++.+..+.... ++++..++|+.+...+. + .+++|+|+||+++ |++.+. ...++.++++|+||||.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEeccHhh
Confidence 999999999999988877 79999999999877653 2 2599999999996 666666 25788999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCc-eEEecC-CC--ccccceEEEEeeec
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDN-SY--RPVPLSQQYIGIQV 709 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~-~~~f~~-~~--rpv~l~~~~~~~~~ 709 (1665)
|.+ ++.+.++.|+..+ +.+.|++++|||+|. .+..+.......+ ...... .. .+..+.+.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 999 7888888777754 558999999999996 4555554332222 222332 22 34566777766654
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
.. .++..+. .++......++||||+|+..+..++..|...+.
T Consensus 257 ~~--~k~~~L~-----~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~------------------------------- 298 (513)
T COG0513 257 EE--EKLELLL-----KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGF------------------------------- 298 (513)
T ss_pred HH--HHHHHHH-----HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC-------------------------------
Confidence 32 2333222 233333455899999999999999998887653
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
.+..+||+|++.+|..+++.|++|..+|||||++++||||+|++.+||+ ||.|. +..+|+||+|
T Consensus 299 ------~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 299 ------KVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred ------eEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 3567799999999999999999999999999999999999999999999 99886 8999999999
Q ss_pred ccCCCCCCCceEEEEEeCCC-cHHHHHH
Q 000324 870 RAGRPQYDSYGEGIIITGHS-ELRYYLS 896 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-~~~~y~~ 896 (1665)
|+||.| ..|.++.|+++. +...+.+
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 999998 899999999975 5554443
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=375.36 Aligned_cols=357 Identities=19% Similarity=0.288 Sum_probs=272.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|.+|+..++ .||..+||+|..++|.++...| |++-||||||||++|++|++..+...... ......-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 458999988 7999999999999998877655 99999999999999999999998543221 11224679999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCcEEEEEECCCcccHhh----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~-~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|+||.|+.+....++.. .++++..++|+.+.+... .++++|+|+|||++..+.++......+..+.++|+||||.
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADr 168 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADR 168 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHh
Confidence 99999999998887776 578999999998776542 3578999999999844444433334467899999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ec---CCCccccceEEEEeeec
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FD---NSYRPVPLSQQYIGIQV 709 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~-f~---~~~rpv~l~~~~~~~~~ 709 (1665)
|.| +|-..+..|++++ +...|.=++|||... .+.+..++...+.+-+ +. .+..|..+..+|..+..
T Consensus 169 LldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~~--~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a 239 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFL-------PKQRRTGLFSATQTQ--EVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA 239 (567)
T ss_pred HhcccHHHHHHHHHHhc-------ccccccccccchhhH--HHHHHHHhhccCceeeeecccccccCchhhcceeeEecH
Confidence 999 7877888777765 667888999999863 4444444433332221 11 12256667777776553
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
. .++..+..+ + .....+++|||.+|...++..+..+.....
T Consensus 240 ~---eK~~~lv~~----L-~~~~~kK~iVFF~TCasVeYf~~~~~~~l~------------------------------- 280 (567)
T KOG0345|consen 240 D---EKLSQLVHL----L-NNNKDKKCIVFFPTCASVEYFGKLFSRLLK------------------------------- 280 (567)
T ss_pred H---HHHHHHHHH----H-hccccccEEEEecCcchHHHHHHHHHHHhC-------------------------------
Confidence 3 333333322 2 223467999999999999888877765421
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
...+...||.|.+..|..++..|.+..-.||+||+++|||+|+|++++||+ ||||. .+..++||+|
T Consensus 281 ----~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~G 346 (567)
T KOG0345|consen 281 ----KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRCG 346 (567)
T ss_pred ----CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhcc
Confidence 133566799999999999999999988899999999999999999999999 99998 7889999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcC-CCcccc
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIES 906 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~-~~piES 906 (1665)
|+||.| +.|.++++..+.+.+|..-+-.. ..++|+
T Consensus 347 RTaR~g--r~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 347 RTARAG--REGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred hhhhcc--CccceEEEecccHHHHHHHHHhcCccchhh
Confidence 999998 89999999999666655433222 344444
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=413.49 Aligned_cols=343 Identities=19% Similarity=0.303 Sum_probs=256.1
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
.|++.+..++ .||.+|+++|.++++.++.++ |+|++||||||||++|++|+++.+......... ..+..++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~-~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKER-YMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCccccc-ccCCceEEEEeC
Confidence 4677777776 689999999999999988774 599999999999999999999998765321110 112468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
|++||.|+++.++.+.+..++++..++|+.....+. ...++|+|+||+++..+..++. .+++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987765432 2368999999999855555443 5788999999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCC-ccccceEEEEeeecCc
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (1665)
+.+ .+.+.+..++..+ . .....|++++|||+++ ...++..+..++ ..+.+.... ....+.+++..+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 4544444443322 1 1235699999999874 334443333222 122222221 1222344444433221
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
+... ++. ++......++||||++++.++.++..|...+
T Consensus 322 ---k~~~----l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYN-LVTQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1222 222 2223335699999999999999998886532
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. |+.+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 23677899999999999999999999999999999999999999999999 88776 899999999999
Q ss_pred CCCCCCCceEEEEEeCCCcH
Q 000324 872 GRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~ 891 (1665)
||.| ..|.++++.+.++.
T Consensus 427 GR~g--~~g~~i~~~~~~d~ 444 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDA 444 (475)
T ss_pred CCCC--CCceEEEEecHHHH
Confidence 9998 67999999987654
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=379.46 Aligned_cols=342 Identities=18% Similarity=0.280 Sum_probs=272.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCC-CCCCCcEEEEEcccHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGS-FNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~-~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
.||..++|||.+++|..++. .++|..|.||||||.+|++|++-.+...+.-... -...++++++++|||+||+|+..+
T Consensus 263 ~~y~eptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 68999999999999977665 5599999999999999999999888765422111 123578999999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHh---hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (1665)
-.++...+|+++..+.|+.+++.+ ...+|+|+|+||+++ |+|-++.. .++++.+||+|||+.+.| ++-+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l---vl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL---VLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH---HhccCceEeccchhhhhcccccHHHH
Confidence 999999999999999999998876 345899999999997 77777654 678899999999999999 7888888
Q ss_pred HHHHHHHHHH------------------hhccCCeeEEEEcccCCC-hHHHH-HHHhccccCceEEecCCCccccc-eEE
Q 000324 645 SIVARTVRQI------------------ETTKEHIRLVGLSATLPN-YEDVA-LFLRVNLEKGLFYFDNSYRPVPL-SQQ 703 (1665)
Q Consensus 645 ~iv~r~~~~~------------------~~~~~~~riV~lSATl~n-~~dv~-~~l~~~~~~~~~~f~~~~rpv~l-~~~ 703 (1665)
.+++.+...- .....-.+.+.||||+|. .+.++ .+|+. | ...+.....+|.|. +|.
T Consensus 419 ~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~-p--v~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 419 KILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR-P--VVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC-C--eEEEeccCCCCccchheE
Confidence 8887664211 111123789999999997 33333 34432 2 24445566677664 445
Q ss_pred EEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhc
Q 000324 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (1665)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 783 (1665)
++.+++... ...+.+ +++.....++|||||+++.|..+|+.|...+.
T Consensus 496 v~m~~ed~k---~kkL~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~------------------------- 542 (673)
T KOG0333|consen 496 VEMVSEDEK---RKKLIE-----ILESNFDPPIIIFVNTKKGADALAKILEKAGY------------------------- 542 (673)
T ss_pred EEEecchHH---HHHHHH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhccc-------------------------
Confidence 554554432 222222 22223467999999999999999999987653
Q ss_pred cccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHH
Q 000324 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1665)
Q Consensus 784 ~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~ 863 (1665)
.+..+|||-++++|+.++..|++|..+|||||+++++|||+|+|.+||+ ||..+ |+.|
T Consensus 543 ------------~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak------sieD 600 (673)
T KOG0333|consen 543 ------------KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK------SIED 600 (673)
T ss_pred ------------eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchhh------hHHH
Confidence 3566799999999999999999999999999999999999999999999 99988 9999
Q ss_pred HHhhhcccCCCCCCCceEEEEEeCCCcHHHHHH
Q 000324 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
|+||+||+||+| ++|.++.|++..+-+.|..
T Consensus 601 YtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 601 YTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred HHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 999999999999 8999999999988665543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=417.43 Aligned_cols=336 Identities=21% Similarity=0.291 Sum_probs=255.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++.+..++ .||.+|+|+|.++++.++.+. ++|++||||||||++|.+|+++.+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 556666666 689999999999999998775 5999999999999999999998875421 24689999999
Q ss_pred HHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccc
Q 000324 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
++||.|+++.+..+.+.+ ++.+..++|+.+...+. ...++|+|+||+++ +.+.+.. ..++++++||+||||.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998876654 79999999998765442 24689999999997 5655543 3578899999999999
Q ss_pred ccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHHHHHHhccccCceEEecCCC-ccccceEEEEeeecCc
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~-~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (1665)
+.+ .+...++.++.. .+...|+++||||+|+. ..+...+..++. .+...... ....+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~~--~i~i~~~~~~~~~i~q~~~~v~~~- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEPQ--EVRIQSSVTTRPDISQSYWTVWGM- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCCe--EEEccCccccCCceEEEEEEechh-
Confidence 876 565666655543 46788999999999863 334333322221 11222221 112334444433321
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.+...+.. ++......++||||+|+..+..++..|...+
T Consensus 231 --~k~~~L~~-----~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---------------------------------- 269 (629)
T PRK11634 231 --RKNEALVR-----FLEAEDFDAAIIFVRTKNATLEVAEALERNG---------------------------------- 269 (629)
T ss_pred --hHHHHHHH-----HHHhcCCCCEEEEeccHHHHHHHHHHHHhCC----------------------------------
Confidence 22222222 2233345789999999999999999887643
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhccc
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (1665)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.|. +..+|+||+|||
T Consensus 270 ---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRt 336 (629)
T PRK11634 270 ---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRT 336 (629)
T ss_pred ---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhccc
Confidence 34667799999999999999999999999999999999999999999999 88876 889999999999
Q ss_pred CCCCCCCceEEEEEeCCCcHHHHH
Q 000324 872 GRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
||.| +.|.|++++++.+...+.
T Consensus 337 GRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 337 GRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred cCCC--CcceEEEEechHHHHHHH
Confidence 9988 789999999887654443
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=382.88 Aligned_cols=345 Identities=20% Similarity=0.283 Sum_probs=280.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|..++.||+++|+.++.+.+ +|..|.||||||++|++|+|..+....... .++.-+|+|.|||+||.|+++.+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCC----CCCceeEEecchHHHHHHHHHHH
Confidence 5789999999999999999977 999999999999999999999998876543 35778999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHh--hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
.+..+..+++.+.+.||...... .+.+.+|+||||+++ .++-.... ....++.++|+|||+.+.| +|..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 99988889999999999876543 467899999999985 44443332 3457789999999999999 788899988
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE----ecCCCccccceEEEEeeecCchhHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY----FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~----f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1665)
+..+ +...|.+++|||-.+ .++...+.....+.+. -...-.|..|.|.|+.++..... ..
T Consensus 240 i~~l-------P~~RQTLLFSATqt~--svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki-------~~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQTK--SVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKI-------DM 303 (758)
T ss_pred HHhC-------Chhheeeeeecccch--hHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHH-------HH
Confidence 8754 778999999999764 3444444433332222 22345688899999887765432 23
Q ss_pred HHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecC
Q 000324 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (1665)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Ha 802 (1665)
+|..+..+. ..++|||++|.+++..+++.++..... ..+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg-----------------------------------~~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPG-----------------------------------IPLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCC-----------------------------------Cceeeecc
Confidence 455555554 678999999999999999998876422 12455699
Q ss_pred CCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 803 gm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
+|++..|..|+..|-...--||+||++++||+|+|+|++||. ||.|. .+.+|+||+||+.|. +..|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe------dv~tYIHRvGRtAR~--~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE------DVDTYIHRVGRTARY--KERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch------hHHHHHHHhhhhhcc--cCCCce
Confidence 999999999999999988899999999999999999999999 89887 899999999999995 489999
Q ss_pred EEEeCCCcHHHHHHhhcCC-Ccccc
Q 000324 883 IIITGHSELRYYLSLMNQQ-LPIES 906 (1665)
Q Consensus 883 iil~~~~~~~~y~~ll~~~-~piES 906 (1665)
+++.++++.+.+...+... +|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 9999999977777655544 66654
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=404.80 Aligned_cols=340 Identities=19% Similarity=0.306 Sum_probs=250.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|+++....+ .||..|+|+|.++++.++++.+ ++++||||||||++|++++++.+... ..+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYD--------LNACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCC--------CCCceEEEECCC
Confidence 444444333 5899999999999999988755 89999999999999999999887532 125689999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++||.|+.+.+.......++.+..++|+....... ...++|+|+||+++..+.++.. ..++++++|||||+|++.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH--LRVDDLKLFILDEADEML 183 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC--cccccccEEEEecHHHHH
Confidence 99999999999888777788899999987654332 2457999999999744444332 357889999999999987
Q ss_pred c-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh-HHH-HHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~-~dv-~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+ .++..+..++ ...+...|++++|||+|+. .++ ..+++. + ..+...........+.+.+..+.. ..
T Consensus 184 ~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~ 252 (401)
T PTZ00424 184 SRGFKGQIYDVF-------KKLPPDVQVALFSATMPNEILELTTKFMRD-P-KRILVKKDELTLEGIRQFYVAVEK--EE 252 (401)
T ss_pred hcchHHHHHHHH-------hhCCCCcEEEEEEecCCHHHHHHHHHHcCC-C-EEEEeCCCCcccCCceEEEEecCh--HH
Confidence 6 3433333332 2346789999999999862 122 223221 1 111111111122223333333221 11
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
.....+. .+.......++||||+|++.+..++..|...+
T Consensus 253 ~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~------------------------------------ 291 (401)
T PTZ00424 253 WKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD------------------------------------ 291 (401)
T ss_pred HHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC------------------------------------
Confidence 1111111 12233345789999999999999988776532
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
.++..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||
T Consensus 292 -~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRagR 360 (401)
T PTZ00424 292 -FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSGR 360 (401)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeeccccccc
Confidence 35788999999999999999999999999999999999999999999999 88775 89999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHh
Q 000324 874 PQYDSYGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~l 897 (1665)
.| ..|.|++++++.+.+++..+
T Consensus 361 ~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 361 FG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CC--CCceEEEEEcHHHHHHHHHH
Confidence 87 78999999998887766543
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=374.93 Aligned_cols=370 Identities=21% Similarity=0.287 Sum_probs=272.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.++..+|.+|+++||.+++++| ++|.|+||||||++|++|+++.+..... ..-..++.-+++|+|||+||.|+|+.+
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALVivPTREL~~Q~y~~~ 231 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIVPTRELALQIYETV 231 (708)
T ss_pred hccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEechHHHHHHHHHHH
Confidence 5799999999999999999766 9999999999999999999999876532 222456889999999999999999999
Q ss_pred HHhhccCC-cEEEEEECCCcccH---hhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHH
Q 000324 571 SNRLQMYD-VKVRELSGDQTLTR---QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (1665)
Q Consensus 571 ~~~~~~~g-i~V~~ltGd~~~~~---~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le 644 (1665)
+++++++. |.-+.+.||..... +..++.+|+|+||+++ |+|..... ..++++++||+||+|.|.+ +++..+.
T Consensus 232 qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 232 QKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHH
Confidence 99998764 44566677665432 2357899999999996 77766543 4577899999999999999 8888888
Q ss_pred HHHHHHHHHHh------hccCCeeEEEEcccCCChHHHHHHHhccccCceEEe---------------------------
Q 000324 645 SIVARTVRQIE------TTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--------------------------- 691 (1665)
Q Consensus 645 ~iv~r~~~~~~------~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f--------------------------- 691 (1665)
.|+..+-.+.. ..+...+-++|||||.+ .|.+.-+.....+++.-
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd--~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l 387 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTD--GVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKL 387 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHH--HHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccc
Confidence 88876632111 12334678999999974 34443333322222111
Q ss_pred cCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCc
Q 000324 692 DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (1665)
Q Consensus 692 ~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~ 771 (1665)
+...-|-.|.++|..++.+- ++-.+...+.+.+.. ....++|||+++...++.-+..|.........-
T Consensus 388 ~~~~iPeqL~qry~vVPpKL---RLV~Laa~L~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~-------- 455 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPKL---RLVALAALLLNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG-------- 455 (708)
T ss_pred ccccCcHHhhhceEecCCch---hHHHHHHHHHHHhhh-hhhceeEEEEechhHHHHHHHHHHhhhhccccc--------
Confidence 11223445666666665542 334444444443332 234589999999999999888887654331100
Q ss_pred hhHHHHHhhhhccccchhhh-hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccC
Q 000324 772 VSREILQSHTDMVKSNDLKD-LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850 (1665)
Q Consensus 772 ~~~~~l~~~~~~~~~~~l~~-ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd 850 (1665)
......+..+.. ++...+.-+||+|++++|..+++.|....-.||+||++++||+|+|.|++||. ||
T Consensus 456 --------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd 523 (708)
T KOG0348|consen 456 --------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YD 523 (708)
T ss_pred --------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eC
Confidence 000011111111 22344777899999999999999999998889999999999999999999999 99
Q ss_pred CCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000324 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 851 ~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
+|. +..||+||+||+.|.| ..|.+++|..+.+.+ |.+++..
T Consensus 524 ~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 524 PPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 997 9999999999999999 889999999999988 5544443
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=360.65 Aligned_cols=344 Identities=19% Similarity=0.313 Sum_probs=272.7
Q ss_pred ccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 000324 478 KISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (1665)
Q Consensus 478 ~i~~Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ 555 (1665)
+.-.|.+|+-+.+ .|++.+||+|..|+|.++.+.+ +|-||.||||||.+|.+||++.|..++. +.-+++
T Consensus 10 ~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP~--------giFalv 80 (442)
T KOG0340|consen 10 SILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDPY--------GIFALV 80 (442)
T ss_pred hhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCCC--------cceEEE
Confidence 3345678988877 6899999999999999999877 9999999999999999999999987643 457899
Q ss_pred EcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCC-CccccceeEEEEe
Q 000324 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIID 630 (1665)
Q Consensus 556 iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~liIiD 630 (1665)
+.|||+||-|+.+.|....+.+++++..++|++..-.+. ...+|++|+|||++ |.+...... ...+++++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999998889999999999998765443 35899999999998 444444222 3457889999999
Q ss_pred ccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCc----cccceEEEE
Q 000324 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR----PVPLSQQYI 705 (1665)
Q Consensus 631 EaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~r----pv~l~~~~~ 705 (1665)
||+.+.+ .+...++.+.. ..+...|.++||||+.+ .+....+.....+..++....- +-.|.+.|+
T Consensus 161 EADrvL~~~f~d~L~~i~e-------~lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEE-------CLPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred chhhhhccchhhHHhhhhc-------cCCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 9999987 46666665544 34667899999999974 4555666554443444433333 334666666
Q ss_pred eeecCchhHHHHHHHHHHHHHHHHHh--CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhc
Q 000324 706 GIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (1665)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 783 (1665)
.++..-. +..+|..+.... +++.++|||++..+|+.++..|.....
T Consensus 232 ~~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~------------------------- 279 (442)
T KOG0340|consen 232 LVSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV------------------------- 279 (442)
T ss_pred ecchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce-------------------------
Confidence 5554321 112222222222 377999999999999999998887543
Q ss_pred cccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHH
Q 000324 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1665)
Q Consensus 784 ~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~ 863 (1665)
.++.+|+.|++.+|...+.+|+++.++|||||+++++|+|+|.|.+||+ ||.|. .+.+
T Consensus 280 ------------r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~diPr------~P~~ 337 (442)
T KOG0340|consen 280 ------------RVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HDIPR------DPKD 337 (442)
T ss_pred ------------eeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cCCCC------CHHH
Confidence 3566799999999999999999999999999999999999999999999 88776 7889
Q ss_pred HHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|+||+||+.|+| +.|.++.|+++.+.+...
T Consensus 338 yiHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 338 YIHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 999999999998 899999999988776554
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=357.66 Aligned_cols=334 Identities=21% Similarity=0.298 Sum_probs=274.8
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH
Q 000324 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (1665)
++.+...| .||+.|+|+|.+++|.++.+.+ +++-|..|+|||.+|.+|+|..+.... ....+++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecch
Confidence 35556666 7999999999999999988765 999999999999999999999885532 3567999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 562 La~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
||-|+-+.+.+..+.+|++|...||++++.+..+ ...|++|+||++.-.+..+.. ..+++..++|+|||+.|++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV--a~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV--ADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc--ccchhceEEEechhhhhhch
Confidence 9999999999988899999999999999887643 467999999999644544443 4678899999999999988
Q ss_pred CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEEecCCCccccceEEEEeeecCchhHHH
Q 000324 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (1665)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (1665)
++++.++.++.. +++..|++++|||+|. -|..|+.....+ ..++.-....+.-+.|+|..+.+.. +.
T Consensus 243 ~F~~~~e~li~~-------lP~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q---Kv 310 (459)
T KOG0326|consen 243 DFQPIVEKLISF-------LPKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ---KV 310 (459)
T ss_pred hhhhHHHHHHHh-------CCccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh---hh
Confidence 799999888775 4789999999999995 456666544332 2455555666677777776665542 23
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCc
Q 000324 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (1665)
Q Consensus 717 ~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (1665)
..++ .+.....-+|.||||||.+.++-+|+.+.+.+..
T Consensus 311 hCLn-----tLfskLqINQsIIFCNS~~rVELLAkKITelGys------------------------------------- 348 (459)
T KOG0326|consen 311 HCLN-----TLFSKLQINQSIIFCNSTNRVELLAKKITELGYS------------------------------------- 348 (459)
T ss_pred hhHH-----HHHHHhcccceEEEeccchHhHHHHHHHHhccch-------------------------------------
Confidence 3333 3334445689999999999999999999887644
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC
Q 000324 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1665)
Q Consensus 797 v~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (1665)
..+.|+.|.+++|+.|+..|++|.++.||||+.+.||||++++.|||+ ||.++ +..+|+||+||+||-|
T Consensus 349 cyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG- 417 (459)
T KOG0326|consen 349 CYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG- 417 (459)
T ss_pred hhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC-
Confidence 345699999999999999999999999999999999999999999999 99887 8899999999999976
Q ss_pred CCceEEEEEeCCCcHHH
Q 000324 877 DSYGEGIIITGHSELRY 893 (1665)
Q Consensus 877 d~~G~~iil~~~~~~~~ 893 (1665)
..|.+|-+.+.++...
T Consensus 418 -hlGlAInLityedrf~ 433 (459)
T KOG0326|consen 418 -HLGLAINLITYEDRFN 433 (459)
T ss_pred -CcceEEEEEehhhhhh
Confidence 8999999888766543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=409.85 Aligned_cols=410 Identities=28% Similarity=0.383 Sum_probs=311.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.|-++|++++.. +..+++|+||||||||||.++..+|...+.. +.+++|++|.|||.+|.+++|..++
T Consensus 119 ~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRD-----------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------CCceEeccchhhhhhhHHHHHHHHh
Confidence 789999999975 5667889999999999999999999988765 3469999999999999999999988
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (1665)
...--.|+.+|||.+.+. .+.++|+|.|-+..++.+.. ..+..+..||+||+|++.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 643224689999999876 58899999998866665554 5788999999999999999 799999988764
Q ss_pred HhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEee-------ecCch--hHHHHHHHHHH-
Q 000324 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQLMNDLC- 723 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~~~~~~~- 723 (1665)
.+..+|+|+||||+||+++++.|++......+......+||+||.+++..- ..+.. ...+...+..+
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 478899999999999999999999977677888899999999999877642 12211 00000000000
Q ss_pred ----------------------------------HHHHH--HHhCCCeEEEEecChhHHHHHHHHHHHHhhhcccccccc
Q 000324 724 ----------------------------------YEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 724 ----------------------------------~~~i~--~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
++.+. ...+.-|+|+|+-|++.|+..+..+.........-..
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e-- 411 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE-- 411 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH--
Confidence 00111 1122458999999999999999988754322211100
Q ss_pred ccCchhHHHHHhhhhcc---------ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCc
Q 000324 768 KEDSVSREILQSHTDMV---------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~---------~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~ 838 (1665)
..-+.++...+..+ +-..+..+|..|+|+||+||-+.-|..|+.+|..|.++|++||.|++.|+|+|+
T Consensus 412 ---~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 412 ---RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred ---HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 00122333333322 234567788899999999999999999999999999999999999999999999
Q ss_pred eEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc--HHHHHHh-hcCCCccccchhHhhHHH
Q 000324 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE--LRYYLSL-MNQQLPIESQFVSKLADQ 915 (1665)
Q Consensus 839 v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~--~~~y~~l-l~~~~piES~l~~~l~d~ 915 (1665)
.+||+-+.+.+|+.. ..+++..+|.||.|||||.|.|..|.+|++-.... ......+ .....|+-|+|...+...
T Consensus 489 rtvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~mi 566 (1041)
T COG4581 489 RTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMI 566 (1041)
T ss_pred cceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHH
Confidence 999999999999664 68899999999999999999999999999954432 3333333 455678888887765555
Q ss_pred HHHHHHhccccChHHHHHHHHhhHH
Q 000324 916 LNAEIVLGTVQNAKEACNWIGYTYL 940 (1665)
Q Consensus 916 lnaeI~~g~i~~~~~~~~wl~~t~~ 940 (1665)
+|- ..+...+.+-..+..+|.
T Consensus 567 lnl----l~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 567 LNL----LRVEGLQTAEDLLERSFA 587 (1041)
T ss_pred Hhh----hhhcccCcHHHHHHhhHH
Confidence 553 233444445556666664
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=423.03 Aligned_cols=315 Identities=28% Similarity=0.464 Sum_probs=253.8
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|++.+.+.+.. ||..|+|+|++||+..+.+++|++++||||||||++|++|+++++.. ++ ++|||+|+++||.|
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~--kal~i~P~raLa~q 82 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GG--KALYIVPLRALASE 82 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CC--cEEEEeChHHHHHH
Confidence 44556666655 79999999999999966667789999999999999999999999864 34 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhH
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~ 1484 (1665)
++++|+ .|+. .|++++.++|+...+.+.+..++|+|||||+|+.+++++ ...+++++++|+||+|++++ .+|+.+
T Consensus 83 ~~~~~~-~~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 83 KFEEFE-RFEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHH-Hhhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHH
Confidence 999999 5754 489999999998877777778899999999999999863 34578999999999999987 569999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC----
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT---- 1560 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~---- 1560 (1665)
|.++++++++ ....|+|+||||++|++++++|++... |.+..||+++...+......++......+.
T Consensus 159 e~il~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 159 EVTLAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred HHHHHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 9999999875 457899999999999999999998753 677889999987765433322222222222
Q ss_pred hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhh-------hHHHHHHHhc
Q 000324 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI-------QEEMLKATLR 1633 (1665)
Q Consensus 1561 k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i-------~d~~L~~~l~ 1633 (1665)
.+.+..+...+..++++||||+||++|+.+|..|....... +...+...+..+.+.+ .+..|.+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT------LTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 34455555555678899999999999999999997654321 1111122333444444 4678899999
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.||++|||||++.+|..|+++|++|.++||||
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLva 335 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISS 335 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 99999999999999999999999999999998
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=399.44 Aligned_cols=332 Identities=21% Similarity=0.281 Sum_probs=242.6
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 487 QPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 487 ~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+..| ||..|+|+|.++++.++.+. +++++||||||||++|++|++.. +..+|||+|+++|+.|+
T Consensus 4 ~~~~-g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq 67 (470)
T TIGR00614 4 KTVF-GLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQ 67 (470)
T ss_pred Hhhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHH
Confidence 3444 89999999999999999876 59999999999999999998752 23689999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHh-------hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
+..+.. .|+.+..++|+...... .....+|+++|||++....+.........++++|||||||++.+ .
T Consensus 68 ~~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~ 142 (470)
T TIGR00614 68 VLQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-W 142 (470)
T ss_pred HHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-c
Confidence 988865 47888888888765422 12357999999998632111110001356799999999999975 2
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (1665)
|..+...+.++.... ...+++++++||||+++. .++..+++... ..+...+..|| .+... +..... ....
T Consensus 143 g~~fr~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~--~~~~~~s~~r~-nl~~~---v~~~~~-~~~~ 214 (470)
T TIGR00614 143 GHDFRPDYKALGSLK-QKFPNVPIMALTATASPSVREDILRQLNLKN--PQIFCTSFDRP-NLYYE---VRRKTP-KILE 214 (470)
T ss_pred ccccHHHHHHHHHHH-HHcCCCceEEEecCCCHHHHHHHHHHcCCCC--CcEEeCCCCCC-CcEEE---EEeCCc-cHHH
Confidence 322333333332222 224678999999999863 56777776542 22222222233 22211 111111 1111
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcE
Q 000324 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1665)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (1665)
. +...+.....++.+||||+|++.|+.++..|...+ ..+
T Consensus 215 ~----l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~ 253 (470)
T TIGR00614 215 D----LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAA 253 (470)
T ss_pred H----HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCe
Confidence 1 22223333445677999999999999999987643 246
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (1665)
+.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |++|. |..+|+||+|||||.|
T Consensus 254 ~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G-- 321 (470)
T TIGR00614 254 GAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG-- 321 (470)
T ss_pred eEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--
Confidence 78899999999999999999999999999999999999999999999 88886 8999999999999988
Q ss_pred CceEEEEEeCCCcHHHHHHhhcC
Q 000324 878 SYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 878 ~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
..|.|+++++..+...+..++..
T Consensus 322 ~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 322 LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCceEEEEechhHHHHHHHHHhc
Confidence 78999999999988877776543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=340.40 Aligned_cols=336 Identities=19% Similarity=0.326 Sum_probs=263.1
Q ss_pred hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 484 EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 484 ~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
+.++..| .||+.|+.||+.+++.++.+.+ +++.|..|+|||..|-+.+++.+.-. .....+++++|||+|
T Consensus 37 dlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~--------~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDIS--------VRETQALILSPTREL 107 (400)
T ss_pred HHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeecccc--------cceeeEEEecChHHH
Confidence 4556666 6999999999999999999866 99999999999999988888776432 234689999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhh-HHHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 563 a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
|.|+.+.+..+..++|+.+..+.|+.++..... -+.+++.+||++ +|++.|+.. ....++++|+||++.|++
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L---~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSL---RTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccc---cccceeEEEeccHHHHHHh
Confidence 999999999988899999999999998665322 478999999999 477777654 456799999999999987
Q ss_pred CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccc-cceEEEEeeecCchhHH
Q 000324 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKKPLQR 715 (1665)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~ 715 (1665)
+++..+-.+.. .++++.|++++|||+|. ..+..+++..+|. .+. .....-+. -+.+.|+.+.. ..++
T Consensus 185 gfk~Qiydiyr-------~lp~~~Qvv~~SATlp~eilemt~kfmtdpv-ril-vkrdeltlEgIKqf~v~ve~--EewK 253 (400)
T KOG0328|consen 185 GFKEQIYDIYR-------YLPPGAQVVLVSATLPHEILEMTEKFMTDPV-RIL-VKRDELTLEGIKQFFVAVEK--EEWK 253 (400)
T ss_pred hHHHHHHHHHH-------hCCCCceEEEEeccCcHHHHHHHHHhcCCce-eEE-EecCCCchhhhhhheeeech--hhhh
Confidence 56655544433 46889999999999984 2233333333332 122 22222233 25566665543 3345
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
+..+.+ +|+. ..-.|++|||||++.+..+.+.+++.. +
T Consensus 254 fdtLcd-LYd~----LtItQavIFcnTk~kVdwLtekm~~~n-------------------------------------f 291 (400)
T KOG0328|consen 254 FDTLCD-LYDT----LTITQAVIFCNTKRKVDWLTEKMREAN-------------------------------------F 291 (400)
T ss_pred HhHHHH-Hhhh----hehheEEEEecccchhhHHHHHHHhhC-------------------------------------c
Confidence 555443 2332 335699999999999988888777643 3
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.|...||.|.+++|..+.+.|++|+-+||++|++-|||+|+|.+.+||+ ||.|. ....|+||+||+||-|
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG 361 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC
Confidence 3666799999999999999999999999999999999999999999999 99886 5688999999999966
Q ss_pred CCCceEEEEEeCCCcHHHHHH
Q 000324 876 YDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~~~~y~~ 896 (1665)
+.|.++-++..++++.|.+
T Consensus 362 --RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 --RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred --CcceEEEEecHHHHHHHHH
Confidence 9999999999988776654
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=396.93 Aligned_cols=419 Identities=17% Similarity=0.217 Sum_probs=286.1
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~ 582 (1665)
+-.++.++.++|++||||||||+++.+++++... .+.+|+|++|+|++|.|+++++.+.++ ..|..|+
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3345567788999999999999999999998752 134899999999999999999976554 4567777
Q ss_pred EEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc-ccc-CCchHHHHHHHHHHHHHhhccCC
Q 000324 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKEH 660 (1665)
Q Consensus 583 ~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~r~~~~~~~~~~~ 660 (1665)
..++.... ....++|+|+||+.+...... ...++.+++|||||+|. ..+ +.+.. ++..+ ....+.+
T Consensus 79 y~vr~~~~---~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~d 146 (819)
T TIGR01970 79 YRVRGENK---VSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRED 146 (819)
T ss_pred EEEccccc---cCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCCC
Confidence 66654332 224689999999975333322 35689999999999995 333 33221 11112 1234678
Q ss_pred eeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 000324 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (1665)
Q Consensus 661 ~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (1665)
.|+|+||||+++ ..+..|++..+ ++. ...+..|+.++|........ ....+...+.. +... ..+++||||
T Consensus 147 lqlIlmSATl~~-~~l~~~l~~~~---vI~--~~gr~~pVe~~y~~~~~~~~--~~~~v~~~l~~-~l~~-~~g~iLVFl 216 (819)
T TIGR01970 147 LKILAMSATLDG-ERLSSLLPDAP---VVE--SEGRSFPVEIRYLPLRGDQR--LEDAVSRAVEH-ALAS-ETGSILVFL 216 (819)
T ss_pred ceEEEEeCCCCH-HHHHHHcCCCc---EEE--ecCcceeeeeEEeecchhhh--HHHHHHHHHHH-HHHh-cCCcEEEEE
Confidence 999999999975 45777776332 232 23345566666654432211 11112222222 2221 257899999
Q ss_pred cChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000324 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (1665)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~ 820 (1665)
+++.++..++..|.+... ....+..+||+|++++|..+++.|++|.
T Consensus 217 pg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~ 262 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGR 262 (819)
T ss_pred CCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCC
Confidence 999999999998875321 0134778899999999999999999999
Q ss_pred CCeEEeccccccccCCCceEEEEecc----cccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 821 VQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~t----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
.+|||||+++++|||+|++++||+.. ..||+.+|- ..++|..++.||+|||||. ..|.||.+++..+..
T Consensus 263 rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 263 RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHH
Confidence 99999999999999999999999964 357777652 3679999999999999997 589999999976544
Q ss_pred HHHHhhcCCCc--cccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHH
Q 000324 893 YYLSLMNQQLP--IESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970 (1665)
Q Consensus 893 ~y~~ll~~~~p--iES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~ 970 (1665)
.+. ....| ..+.| ...+..-...| +.+..+ +.|| ..+...
T Consensus 340 ~l~---~~~~PEI~r~~L----~~~~L~l~~~g-~~~~~~-~~~l-----------------------------~~P~~~ 381 (819)
T TIGR01970 340 RLP---AQDEPEILQADL----SGLALELAQWG-AKDPSD-LRWL-----------------------------DAPPSV 381 (819)
T ss_pred hhh---cCCCcceeccCc----HHHHHHHHHcC-CCChhh-CCCC-----------------------------CCcCHH
Confidence 332 22222 22222 22222111122 111110 1111 111124
Q ss_pred HHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCC
Q 000324 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLS 1036 (1665)
Q Consensus 971 li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s 1036 (1665)
.+..|+..|...|+|+.+ | .+|++|+.||.++++|...+++..+....|. .+.+.|.|+-
T Consensus 382 ~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~l 441 (819)
T TIGR01970 382 ALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAALL 441 (819)
T ss_pred HHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHHH
Confidence 578999999999999744 3 6899999999999999999999887655543 3455444443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=367.55 Aligned_cols=337 Identities=22% Similarity=0.296 Sum_probs=257.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCC--CCcEEEEEcccHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~--~~~kil~iaP~raLa~q~~~ 568 (1665)
.++..+||+|+.+++.+..+.+ +++|||||||||.+|++|++..+............ ..+.+++++|||+||.|++.
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred ccccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 6899999999999999877766 99999999999999999999998876443211111 35899999999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc--CCchH
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPV 642 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~ 642 (1665)
+.++.....++++...+|+.+...+. ..+++|+||||+++ |.+.++. ..++.++++|+|||+.|.| .|+|.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchHHhhhhcccccc
Confidence 99998877889999999997665542 35899999999998 5555544 4678899999999999999 69999
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCC-h-HHHHHHHhccccCceEEec--CCCccccceEEEEeeecCchhHHHHH
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLPN-Y-EDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl~n-~-~dv~~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
+..|+.++-. ......|.++||||.|. . ...+.|+..+ .++.-- -.-.+..+.+.+..+.+......
T Consensus 248 Ir~iv~~~~~---~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~--- 318 (482)
T KOG0335|consen 248 IRKIVEQLGM---PPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFVNEMEKRSK--- 318 (482)
T ss_pred HHHHhcccCC---CCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeeecchhhHHH---
Confidence 9988876521 12357899999999984 1 2333444332 121111 11123345555555554332221
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 719 MNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
+.+++-.. ..... ...++|||.+++.+..++..|...+....
T Consensus 319 Lldll~~~-~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~-------------------------------- 365 (482)
T KOG0335|consen 319 LLDLLNKD-DGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAK-------------------------------- 365 (482)
T ss_pred HHHHhhcc-cCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCce--------------------------------
Confidence 11111110 00001 23899999999999999999988764433
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
-.||.-++.+|...++.|++|.+.|||||+++|||+|+|+|++||+ ||.|. ...+|+||+||+||
T Consensus 366 -----sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 366 -----SIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DIDDYVHRIGRTGR 430 (482)
T ss_pred -----eecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chhhHHHhcccccc
Confidence 3499999999999999999999999999999999999999999999 99887 68999999999999
Q ss_pred CCCCCceEEEEEeCCCc
Q 000324 874 PQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~ 890 (1665)
.| ..|.++.|++...
T Consensus 431 ~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 431 VG--NGGRATSFFNEKN 445 (482)
T ss_pred CC--CCceeEEEecccc
Confidence 98 8899999998443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=402.60 Aligned_cols=320 Identities=33% Similarity=0.506 Sum_probs=257.2
Q ss_pred HHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1332 YEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1332 ~~~l~~--~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
+..++. ++..++|.|+.++...+.++.|++||+|||||||++|+++|++.+... ++ ++|||||+++||.|.+++
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~--k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GG--KVVYIVPLKALAEEKYEE 95 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CC--cEEEEeChHHHHHHHHHH
Confidence 444444 465555555555555554488999999999999999999999999983 34 999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-CchhHHHHH
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIV 1488 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~-~g~~~e~~~ 1488 (1665)
|+ +|.. .|++|...||+...+...+..++|||+|||+|+.+.|++.. .+..|++|||||+|++++. +|+.+|.++
T Consensus 96 ~~-~~~~-~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv 171 (766)
T COG1204 96 FS-RLEE-LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIV 171 (766)
T ss_pred hh-hHHh-cCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHH
Confidence 99 6654 58999999999998888899999999999999999998554 7889999999999999997 899999999
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCC-cEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~-~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i 1567 (1665)
++++.. ...+|+++||||++|+.++|+|+++... ..+.+.|..++++....+.+...... ..........+..+
T Consensus 172 ~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v 246 (766)
T COG1204 172 ARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELV 246 (766)
T ss_pred HHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHH
Confidence 999876 3458999999999999999999999865 46777888899888877776654333 22223344556667
Q ss_pred HHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCccccccc--CCcccch-hhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL--WPAEEVE-PFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1568 ~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~--~~~~~l~-~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
...+..++++||||+||+.|..+|..|............ ... ...+.+. .......++.|++++..|+++||+||+
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDE-KIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhh-hhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 777789999999999999999999999864443322211 111 1111111 223344568899999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++|..+++.|+.|+|+||||
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~ 346 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVS 346 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEe
Confidence 999999999999999999998
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=390.90 Aligned_cols=333 Identities=20% Similarity=0.302 Sum_probs=245.4
Q ss_pred ccCCCCh-hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEE
Q 000324 478 KISEMPE-WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (1665)
Q Consensus 478 ~i~~Lp~-~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~i 556 (1665)
+...++. .++.. .||..|+|+|.++++.++.+. ++++++|||+|||++|++|++.. ...+|||
T Consensus 8 ~~~~~~~~~l~~~-fG~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVi 71 (607)
T PRK11057 8 NLESLAKQVLQET-FGYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVV 71 (607)
T ss_pred CchhHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEE
Confidence 4444443 33343 489999999999999998775 59999999999999999999853 2268999
Q ss_pred cccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHH--HHHhhcCCCccccceeEE
Q 000324 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLL 627 (1665)
Q Consensus 557 aP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~li 627 (1665)
+|+++|+.|++..+... |+.+..+.+........ ....+++++|||++. .+... ....++++|
T Consensus 72 sPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~i 143 (607)
T PRK11057 72 SPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALL 143 (607)
T ss_pred ecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEE
Confidence 99999999999988753 78888887766543321 135789999999862 22222 123468999
Q ss_pred EEeccccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccCceEEecCCCccccceE
Q 000324 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (1665)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~ 702 (1665)
||||||++.+ .+.+.+..+ ..+. ...+++++++||||+++. .++..+++.. .......+..||. +.
T Consensus 144 VIDEaH~i~~~G~~fr~~y~~L-~~l~----~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~- 214 (607)
T PRK11057 144 AVDEAHCISQWGHDFRPEYAAL-GQLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IR- 214 (607)
T ss_pred EEeCccccccccCcccHHHHHH-HHHH----HhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ce-
Confidence 9999999975 244555432 2222 234578999999999863 3566666543 2233333333442 21
Q ss_pred EEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhh
Q 000324 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (1665)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 782 (1665)
+....... .... +...+ ....++++||||+|+++|+.++..|...+
T Consensus 215 -~~v~~~~~---~~~~----l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g------------------------- 260 (607)
T PRK11057 215 -YTLVEKFK---PLDQ----LMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG------------------------- 260 (607)
T ss_pred -eeeeeccc---hHHH----HHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------
Confidence 11111111 1111 11212 22346799999999999999999987643
Q ss_pred ccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHH
Q 000324 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (1665)
Q Consensus 783 ~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~ 862 (1665)
..++.+||+|+..+|..+++.|+.|.++|||||+++++|||+|++++||+ |++|. |..
T Consensus 261 ------------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~ 318 (607)
T PRK11057 261 ------------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIE 318 (607)
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHH
Confidence 24788899999999999999999999999999999999999999999999 88886 899
Q ss_pred HHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000324 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1665)
+|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 319 ~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 319 SYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred HHHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 9999999999998 679999999999988888777654
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=394.19 Aligned_cols=410 Identities=18% Similarity=0.221 Sum_probs=282.9
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~ 582 (1665)
|-.++.++.+++++||||||||+++.++++.... .+.+|++++|+|++|.|+++++.+.++ ..|..|+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3344566778999999999999999999986521 124899999999999999999976654 4577888
Q ss_pred EEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCee
Q 000324 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (1665)
Q Consensus 583 ~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~r 662 (1665)
..+++..... ..++|+|+||+.+..+... ...++.+++|||||+|.. +...+.++..+.......+++.|
T Consensus 82 y~vr~~~~~~---~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 82 YRMRAESKVG---PNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred EEecCccccC---CCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccce
Confidence 8777654322 3578999999986433333 346899999999999963 21111122222222234567899
Q ss_pred EEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 000324 663 LVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742 (1665)
Q Consensus 663 iV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s 742 (1665)
+|+||||++. +.+..|+...+ ++. ...+..|+.++|........ ....+...+.. +.. ...+++||||++
T Consensus 152 lilmSATl~~-~~l~~~~~~~~---~I~--~~gr~~pV~~~y~~~~~~~~--~~~~v~~~l~~-~l~-~~~g~iLVFlpg 221 (812)
T PRK11664 152 LLIMSATLDN-DRLQQLLPDAP---VIV--SEGRSFPVERRYQPLPAHQR--FDEAVARATAE-LLR-QESGSLLLFLPG 221 (812)
T ss_pred EEEEecCCCH-HHHHHhcCCCC---EEE--ecCccccceEEeccCchhhh--HHHHHHHHHHH-HHH-hCCCCEEEEcCC
Confidence 9999999964 46777775322 332 33355567777664432211 11111122222 222 136899999999
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000324 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822 (1665)
Q Consensus 743 r~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~ 822 (1665)
++++..++..|...... ...+..+||+|+..+|..+++.|++|..+
T Consensus 222 ~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk 267 (812)
T PRK11664 222 VGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRK 267 (812)
T ss_pred HHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeE
Confidence 99999999998753110 12367789999999999999999999999
Q ss_pred eEEeccccccccCCCceEEEEecc----cccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHH
Q 000324 823 VLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 823 VLVaT~tla~GVdlP~v~vVI~~t----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1665)
|||||+++++|||+|++++||+.. ..||+..|. ..++|..+|.||+|||||. ..|.||.+++..+..
T Consensus 268 VlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~-- 342 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE-- 342 (812)
T ss_pred EEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh--
Confidence 999999999999999999999964 348888763 2578999999999999997 489999999976543
Q ss_pred HHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHH
Q 000324 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974 (1665)
Q Consensus 895 ~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~ 974 (1665)
.+.....| .-+...|...+..-...|. .+..+ +.|| +.| ....+..
T Consensus 343 -~l~~~~~P--EI~r~dL~~~~L~l~~~g~-~~~~~-~~~l------------------------d~P-----~~~~~~~ 388 (812)
T PRK11664 343 -RAAAQSEP--EILHSDLSGLLLELLQWGC-HDPAQ-LSWL------------------------DQP-----PAAALAA 388 (812)
T ss_pred -hCccCCCC--ceeccchHHHHHHHHHcCC-CCHHh-CCCC------------------------CCC-----CHHHHHH
Confidence 33323333 2222233333332222231 22111 1111 011 1245789
Q ss_pred HHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCC
Q 000324 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (1665)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1022 (1665)
|+..|...|+|+.+ | .+|++|+.|+.++++|...+++..+...
T Consensus 389 A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 389 AKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 99999999999743 3 7899999999999999999999876543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=394.75 Aligned_cols=331 Identities=20% Similarity=0.276 Sum_probs=247.2
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHH
Q 000324 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1665)
Q Consensus 486 ~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (1665)
++..| ||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. +..++||+|+++|+.|
T Consensus 5 l~~~f-g~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 5 LKRTF-GYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKD 68 (591)
T ss_pred HHHhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHH
Confidence 34444 79999999999999999876 59999999999999999998742 2258999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHH--HHHhhcCCCccccceeEEEEecccccc
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
++..+.. +|+.+..++|+....... ....+|+++|||++. .+.+. ....++++|||||||++.
T Consensus 69 q~~~l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 69 QVDQLRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVS 140 (591)
T ss_pred HHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCcccc
Confidence 9998876 378899999887654321 236799999999862 22222 224578999999999997
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhH
Q 000324 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQ 714 (1665)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~ 714 (1665)
+ +|..+.....++....... +..+++++|||.+. ..++..+++... ...++.+..||. +. +.......
T Consensus 141 ~-~g~~frp~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~n-l~--~~v~~~~~--- 210 (591)
T TIGR01389 141 Q-WGHDFRPEYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRPN-LR--FSVVKKNN--- 210 (591)
T ss_pred c-ccCccHHHHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCCC-cE--EEEEeCCC---
Confidence 4 3333333333333333332 34559999999875 356888887643 222333333442 22 21111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcC
Q 000324 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 715 ~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
... .+.+.+.. ..+.++||||+|++.|+.++..|...+
T Consensus 211 ~~~----~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g------------------------------------- 248 (591)
T TIGR01389 211 KQK----FLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG------------------------------------- 248 (591)
T ss_pred HHH----HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------
Confidence 111 12222222 236789999999999999999887543
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 795 ~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
..++.+||||+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.
T Consensus 249 ~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~ 318 (591)
T TIGR01389 249 ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRD 318 (591)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCC
Confidence 23678899999999999999999999999999999999999999999999 99887 899999999999998
Q ss_pred CCCCceEEEEEeCCCcHHHHHHhhcCCCcc
Q 000324 875 QYDSYGEGIIITGHSELRYYLSLMNQQLPI 904 (1665)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~~ll~~~~pi 904 (1665)
| ..|.|+++++..+...+..++....|-
T Consensus 319 G--~~~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 319 G--LPAEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred C--CCceEEEecCHHHHHHHHHHHhccCCc
Confidence 8 678999999999998888888765553
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=357.53 Aligned_cols=374 Identities=21% Similarity=0.299 Sum_probs=266.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCC---CCCCCCcE--EEEEcccHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG---SFNHSNYK--IVYVAPMKALVAE 565 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g---~~~~~~~k--il~iaP~raLa~q 565 (1665)
.||..|++||+.++|.++.+.-+++..|.||||||++|-+||+..+........ .....+++ .++++|||+||.|
T Consensus 199 ~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 199 LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 699999999999999999997779999999999999999999996654322110 11123344 9999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhh-HHHHHhhcCCCccccceeEEEEeccccccc-CCc
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRG 640 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg 640 (1665)
+.+.+.......+++|..++||...-+++. ..++|+|+||++ |..+.........+.+++++|+||+|+|.. +.-
T Consensus 279 V~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF 358 (731)
T KOG0347|consen 279 VKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHF 358 (731)
T ss_pred HHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccH
Confidence 999999999889999999999998877653 478999999999 566655544456678899999999999986 455
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCCh--HHHHHHHhccccC-----ce--EEecCCCccccceEEEEeeecCc
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEK-----GL--FYFDNSYRPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dv~~~l~~~~~~-----~~--~~f~~~~rpv~l~~~~~~~~~~~ 711 (1665)
..+..++..+. -++.....|.+.+|||+.-. ..+..-....... .+ ..-.-.+|.-| .++..+...
T Consensus 359 ~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp---kiiD~t~q~ 433 (731)
T KOG0347|consen 359 EELSKLLKHLN--EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP---KIIDLTPQS 433 (731)
T ss_pred HHHHHHHHHhh--hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC---eeEecCcch
Confidence 56666666554 13445677999999998621 0111111100000 00 00000011111 111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHh--------------CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHH
Q 000324 712 PLQRFQLMNDLCYEKVVAVA--------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~--------------~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l 777 (1665)
. ....+.+..+.+. -.+.+|||||+...+.+++-.|.......
T Consensus 434 --~----ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p----------------- 490 (731)
T KOG0347|consen 434 --A----TASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPP----------------- 490 (731)
T ss_pred --h----HHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCC-----------------
Confidence 1 1111111111110 15789999999999999998887654322
Q ss_pred HhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcc
Q 000324 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (1665)
Q Consensus 778 ~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~ 857 (1665)
..+||.|.+.+|...++.|++..-.|||||+++|||+|+|+|.+||| |..|.
T Consensus 491 --------------------~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH----YqVPr---- 542 (731)
T KOG0347|consen 491 --------------------LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH----YQVPR---- 542 (731)
T ss_pred --------------------chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE----eecCC----
Confidence 23499999999999999999999999999999999999999999999 77665
Q ss_pred cCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhh---c--C---CCccccchhHhhHHH--HHHHHHhcc
Q 000324 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM---N--Q---QLPIESQFVSKLADQ--LNAEIVLGT 924 (1665)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll---~--~---~~piES~l~~~l~d~--lnaeI~~g~ 924 (1665)
+..-|+||.||+.|++ ..|..+++|.+.+...|.++. . + -+||+..++..+.+. |..||..-.
T Consensus 543 --tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e 615 (731)
T KOG0347|consen 543 --TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLE 615 (731)
T ss_pred --ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhh
Confidence 6677999999999998 789999999999988887752 1 1 257777777655543 344444433
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=335.32 Aligned_cols=341 Identities=19% Similarity=0.270 Sum_probs=262.3
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccH
Q 000324 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1665)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (1665)
|+.++..+ .+|..|+.||..++|-++.. ..|+|..+..|+|||.+|.|++|..+... ...+.+++++|+|
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 45555555 68999999999999998866 56999999999999999999999887543 2356799999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
+||.|+.+.+.+..+..++++.....+....+...-..+|+|+||+.+ |...+-.. ..+++++++|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~--id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKC--IDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHh--hChhhceEEEecchhhhhhcc
Confidence 999999999999888778888887777755544444678999999997 54444122 357889999999999998754
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc-cc-CceEEecCCCccccceEEEEeeecCchhHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN-LE-KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~-~~-~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (1665)
|-. ..-.++ ....+++.|++++|||.. +.++.|...- +. +.++.-.....-.++.|.++.+.. ...+++
T Consensus 249 G~~--D~S~rI---~~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~--~~~K~~ 319 (477)
T KOG0332|consen 249 GFQ--DQSIRI---MRSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC--RDDKYQ 319 (477)
T ss_pred ccc--ccchhh---hhhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc--hhhHHH
Confidence 321 111222 334678999999999986 4555554321 11 233333444444556666655443 334455
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcE
Q 000324 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (1665)
Q Consensus 718 ~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (1665)
.+.. +|.. ..-++.||||+|++.+..++..+...+ +.|
T Consensus 320 ~l~~-lyg~----~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYGL----LTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHhh----hhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5444 3332 235799999999999999999988765 457
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (1665)
..+||.|...+|..+.+.|+.|.-+|||+|+++|||||++.+.+||+ ||.|...-..-+...|+||+||+||-|
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtGRFG-- 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTGRFG-- 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhccccccc--
Confidence 88899999999999999999999999999999999999999999999 887765556679999999999999976
Q ss_pred CceEEEEEeCCCc
Q 000324 878 SYGEGIIITGHSE 890 (1665)
Q Consensus 878 ~~G~~iil~~~~~ 890 (1665)
+.|.++-+....+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 9999999888755
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=396.08 Aligned_cols=308 Identities=32% Similarity=0.528 Sum_probs=241.5
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
+++.+.+.+.. ||..|+|+|++||+..+.+++|++++||||||||++|++|+++++.. .++ ++|||+|+++|+.|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~--~~l~l~P~~aLa~q 83 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGG--KAVYLVPLKALAEE 83 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCC--eEEEEeChHHHHHH
Confidence 44556666665 89999999999999866667789999999999999999999999876 234 99999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhH
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~ 1484 (1665)
+++.|+ .|.. .|++|..++|+...+.+.+..++|+|+||++|+.++++ ....++++++||+||+|++++ .+|+.+
T Consensus 84 ~~~~~~-~~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~l 159 (720)
T PRK00254 84 KYREFK-DWEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATL 159 (720)
T ss_pred HHHHHH-HHhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHH
Confidence 999998 4643 58999999999887767777889999999999999875 334688999999999999986 468888
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEE--EEeecccchhhHH---HHhc
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI--HIQGVDITNFEAR---MQAM 1559 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i--~i~~~~~~~~~~~---~~~~ 1559 (1665)
+.+++++ ..+.|+|++|||++|++++++|++... +.+..||+++.. ..+++........ ...+
T Consensus 160 e~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 160 EMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred HHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 8887764 457899999999999999999998753 567789988853 3333322111110 1122
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCC-cccchhhHhh----hhHHHHHHHhcc
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP-AEEVEPFIDN----IQEEMLKATLRH 1634 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~-~~~l~~~~~~----i~d~~L~~~l~~ 1634 (1665)
... +...+..++++||||+||++|+.+|..|...+.. ++..+ .+.+..+.+. ..+..|++.+.+
T Consensus 228 ~~~----~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (720)
T PRK00254 228 ESL----VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELADSLEENPTNEKLKKALRG 296 (720)
T ss_pred HHH----HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 222 2333345789999999999999999999765431 22221 1233334333 356788999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||++|||||++.+|..++++|++|.++||||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 9999999999999999999999999999998
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.19 Aligned_cols=336 Identities=19% Similarity=0.305 Sum_probs=256.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.||.+|+|||+++.|.+|++.+ ++..|.||+|||++|++|-+-++.......+ +..++.+|+++||++||.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 5999999999999999999877 9999999999999999998776654332222 335678999999999999998887
Q ss_pred HHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
.+. ...|.+..++.|+.+...+. ..+..|+++||++|..|..... ..+..+.++|+|||+.|+| +|.|.+..|
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~--i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNV--INLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCe--eeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 764 34477777788877665542 3578999999999855544332 4678899999999999999 788877665
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCcccc---ceEEEEeeecCchhHHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDLC 723 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~~~~~~ 723 (1665)
+-- ..++.++++.|||.|. .|.+........++..+..+..-+. +.|.++ ++. ...++..+..
T Consensus 392 lld-------iRPDRqtvmTSATWP~--~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~~--d~~k~~~~~~-- 457 (629)
T KOG0336|consen 392 LLD-------IRPDRQTVMTSATWPE--GVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VTT--DSEKLEIVQF-- 457 (629)
T ss_pred hhh-------cCCcceeeeecccCch--HHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-ecc--cHHHHHHHHH--
Confidence 543 4678999999999995 3444433333444555555544332 333332 222 2233333222
Q ss_pred HHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCC
Q 000324 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (1665)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hag 803 (1665)
.+.......++||||.++.-|..+...|+-.++.... +||+
T Consensus 458 --f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~-------------------------------------lHG~ 498 (629)
T KOG0336|consen 458 --FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQS-------------------------------------LHGN 498 (629)
T ss_pred --HHHhcCCCceEEEEEechhhhhhccchhhhcccchhh-------------------------------------ccCC
Confidence 2334455779999999998887777666655444332 3999
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEE
Q 000324 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 804 m~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
-.+.||+..++.|++|.++|||||+.+++|+|+|++++|++ ||.|. .+.+|+||+||+||+| +.|.++
T Consensus 499 r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~si 566 (629)
T KOG0336|consen 499 REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGTSI 566 (629)
T ss_pred hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcceE
Confidence 99999999999999999999999999999999999999999 99886 8999999999999999 899999
Q ss_pred EEeCCCcHHHHHHh
Q 000324 884 IITGHSELRYYLSL 897 (1665)
Q Consensus 884 il~~~~~~~~y~~l 897 (1665)
.+.+..+......+
T Consensus 567 s~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 567 SFLTRNDWSMAEEL 580 (629)
T ss_pred EEEehhhHHHHHHH
Confidence 99998887766544
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=341.12 Aligned_cols=346 Identities=23% Similarity=0.308 Sum_probs=250.7
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~--------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
.+++.+.|+|..+++.++.. ..++.|.||||||||++|.+||++.+.... .+..++|+|+|+++|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccceEEEEEeeHHHH
Confidence 56889999999999998642 246999999999999999999999987642 235799999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEECCCcccHhhh--------ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccc
Q 000324 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 563 a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~--------~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1665)
+.|+++.|.++....|+.|+.++|..++..+.. ...+|+|+||+++ |+|..-.+ ..+++++++||||||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999998876532 1349999999997 77764332 578999999999999
Q ss_pred cccc-CCchHHHHHHHHHH------------HHHh---------------hccCCeeEEEEcccCCC-hHHHHHHHhccc
Q 000324 634 LLHD-NRGPVLESIVARTV------------RQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (1665)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~------------~~~~---------------~~~~~~riV~lSATl~n-~~dv~~~l~~~~ 684 (1665)
+|++ .|...+..+...+. ++.. ...++...+.+|||+.. +..+..+--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 34333333332221 1100 01223346777888763 444444332222
Q ss_pred cCceEEec----CCCc-cccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhh
Q 000324 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (1665)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1665)
. +|... ..|+ |-.+....+.....-.. ..+|.. .......++|+|+++...+.+++..|.-...+
T Consensus 386 r--l~~v~~~~~~ryslp~~l~~~~vv~~~~~kp-------l~~~~l-I~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 R--LFHVSKPLIGRYSLPSSLSHRLVVTEPKFKP-------LAVYAL-ITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred c--eEEeecccceeeecChhhhhceeecccccch-------HhHHHH-HHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 1 22222 1122 22233333222221100 112322 23344679999999999999999988732211
Q ss_pred ccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCce
Q 000324 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (1665)
Q Consensus 760 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (1665)
. ...+..+.|+++...|...++.|+.|.++|||||++++||+|+-++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 1 0123335899999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000324 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
++||+ ||+|. +...|+||+||+||+| ..|.|+.+....+...|.+++..
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 99999 99986 8999999999999999 77999999999888888776543
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=383.56 Aligned_cols=443 Identities=17% Similarity=0.176 Sum_probs=284.7
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcE
Q 000324 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVK 580 (1665)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~ 580 (1665)
+.|..++.+++.++|+|+||||||+. +|.+-.- ... | ...+|++..|+|-.|.+++.++.+.++ .+|-.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle-~g~---g----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLE-LGR---G----VKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHH-cCC---C----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 34555677788899999999999994 5532111 111 1 123688889987666666666665554 23444
Q ss_pred EEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc-ccc-CCchHHHHHHHHHHHHHhhcc
Q 000324 581 VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTK 658 (1665)
Q Consensus 581 V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d-~rg~~le~iv~r~~~~~~~~~ 658 (1665)
|+.-+ ..+.+....++|+|+||+.+-.... ....++.+++|||||||. ..+ ++ +..++.++ .. ..
T Consensus 150 VGY~v---rf~~~~s~~t~I~v~TpG~LL~~l~---~d~~Ls~~~~IIIDEAHERsLn~Df---LLg~Lk~l---L~-~r 216 (1294)
T PRK11131 150 VGYKV---RFNDQVSDNTMVKLMTDGILLAEIQ---QDRLLMQYDTIIIDEAHERSLNIDF---ILGYLKEL---LP-RR 216 (1294)
T ss_pred eceee---cCccccCCCCCEEEEChHHHHHHHh---cCCccccCcEEEecCccccccccch---HHHHHHHh---hh-cC
Confidence 44322 2233334579999999998532222 224689999999999994 333 22 11222222 22 23
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCch---hHHHHHHHHHHHHHHHHHhCCCe
Q 000324 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP---LQRFQLMNDLCYEKVVAVAGKHQ 735 (1665)
Q Consensus 659 ~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~ 735 (1665)
++.|+|+||||+ +.+.++++++..+ ++...+ +..|+.+.|........ ...+..+...+.. + ...+.++
T Consensus 217 pdlKvILmSATi-d~e~fs~~F~~ap---vI~V~G--r~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~-l-~~~~~Gd 288 (1294)
T PRK11131 217 PDLKVIITSATI-DPERFSRHFNNAP---IIEVSG--RTYPVEVRYRPIVEEADDTERDQLQAIFDAVDE-L-GREGPGD 288 (1294)
T ss_pred CCceEEEeeCCC-CHHHHHHHcCCCC---EEEEcC--ccccceEEEeecccccchhhHHHHHHHHHHHHH-H-hcCCCCC
Confidence 578999999999 4677888776443 444443 34455666654332111 1112222111111 1 1234678
Q ss_pred EEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHH
Q 000324 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (1665)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~ 815 (1665)
+||||+++.++..++..|...+.. ...|..+||+|+..+|..+++.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~ 334 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLR----------------------------------HTEILPLYARLSNSEQNRVFQS 334 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCC----------------------------------cceEeecccCCCHHHHHHHhcc
Confidence 999999999999999998764311 1236678999999999999886
Q ss_pred HhCCCCCeEEeccccccccCCCceEEEEec----ccccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeC
Q 000324 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1665)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (1665)
.|..+|||||+++++|||+|++++||+. ...||+..+- ..++|..+|.||+|||||.+ .|.||.+++
T Consensus 335 --~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyt 409 (1294)
T PRK11131 335 --HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYS 409 (1294)
T ss_pred --cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCC
Confidence 5789999999999999999999999995 3568877652 35688999999999999974 899999999
Q ss_pred CCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHH
Q 000324 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967 (1665)
Q Consensus 888 ~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~ 967 (1665)
..+.. .+-. .+...-+...|...+..-..+|. . ++..+. +.+.|
T Consensus 410 e~d~~---~~~~--~~~PEIlR~~L~~viL~lk~lgl-~--------------------di~~F~-----fldpP----- 453 (1294)
T PRK11131 410 EDDFL---SRPE--FTDPEILRTNLASVILQMTALGL-G--------------------DIAAFP-----FVEAP----- 453 (1294)
T ss_pred HHHHH---hhhc--ccCCccccCCHHHHHHHHHHcCC-C--------------------Ccceee-----CCCCC-----
Confidence 76533 2211 11122222223332222222221 1 111110 01111
Q ss_pred HHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChh
Q 000324 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQD 1047 (1665)
Q Consensus 968 ~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~ 1047 (1665)
-.+.|..|+..|.+.|+|+.++.++...+|++|+.+|.+|++|...+++..+....|. .+++.|.|+-+ ..++..|+.
T Consensus 454 ~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Ls-v~dpf~~p~ 531 (1294)
T PRK11131 454 DKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALS-IQDPRERPM 531 (1294)
T ss_pred CHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHc-CCCcccCCc
Confidence 1256889999999999998654334568999999999999999999999988777765 56666655533 356677776
Q ss_pred HHHHH
Q 000324 1048 EKMEL 1052 (1665)
Q Consensus 1048 E~~~l 1052 (1665)
++.+-
T Consensus 532 ~~~~~ 536 (1294)
T PRK11131 532 DKQQA 536 (1294)
T ss_pred hhHHH
Confidence 66543
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=380.54 Aligned_cols=308 Identities=29% Similarity=0.456 Sum_probs=242.3
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|++...+.+.. +|. ++|+|++|++.+.. ++|++++||||||||++|++++++.+.. ++ ++|||+|+++||.|
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q 80 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAME 80 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHH
Confidence 44555555544 455 99999999999865 5569999999999999999999998876 23 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhH
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~ 1484 (1665)
++++|+ ++.. .|.++..++|+...+...++.++|+|+|||+|+.++++|. ..++++++||+||+|++++ .+|+.+
T Consensus 81 ~~~~~~-~l~~-~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 81 KYEELS-RLRS-LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHH-HHhh-cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHH
Confidence 999999 4543 5789999999988776677888999999999999998854 4588999999999999986 569999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHH
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~ 1564 (1665)
+.++++++++ ..+.|+|++|||++|+.++++|+++.. |.+..||+|+.+.+............ .......
T Consensus 157 e~ll~~~~~~----~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~~-~~~~~~~ 226 (674)
T PRK01172 157 ETVLSSARYV----NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGYE-RSQVDIN 226 (674)
T ss_pred HHHHHHHHhc----CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeecccc-cccccHH
Confidence 9999888765 457999999999999999999998753 66778999998776543322111000 0111123
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
..+......++++||||+|+++|+.+|..|...+..... +.. ..+ .....+..|++++.+||++|||+|+
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~-~~~-----~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFND----FKV-SSE-----NNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccc----ccc-ccc-----ccccccHHHHHHHhcCEEEecCCCC
Confidence 334444466789999999999999999999765442211 110 001 1233467888999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+|..+++.|++|.++||||
T Consensus 297 ~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred HHHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999998
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=331.12 Aligned_cols=335 Identities=19% Similarity=0.277 Sum_probs=261.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
..|++++|+|-+++|.++.+.+ |+-.|-||||||.+|+.|++-+++....- ...+++..||++|||+||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHH
Confidence 3588999999999999998877 99999999999999999999988764321 1235789999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~ 645 (1665)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++.-+.. .+.++.++||||++.|.+ ++-+...+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKat---n~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKAT---NLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcc---cceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999999887653 25899999999996 77776654 678899999999999998 67777777
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCC--ccccceEEEEeeecCchhHHHHHHHHH
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~ 722 (1665)
|...+ .++.|.++||||++- .+.+++-+-..| +-.+..+. ....+.|.+..+.. ..++++.+.
T Consensus 394 I~~hi-------rpdrQtllFsaTf~~kIe~lard~L~dp---VrvVqg~vgean~dITQ~V~V~~s--~~~Kl~wl~-- 459 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFKKKIEKLARDILSDP---VRVVQGEVGEANEDITQTVSVCPS--EEKKLNWLL-- 459 (731)
T ss_pred HHhhc-------CCcceEEEeeccchHHHHHHHHHHhcCC---eeEEEeehhccccchhheeeeccC--cHHHHHHHH--
Confidence 66644 678999999999974 333332222222 22222211 11223333332222 222333222
Q ss_pred HHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecC
Q 000324 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (1665)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Ha 802 (1665)
..+......+++||||.-+..+++++..|.-.+ +.|+.+||
T Consensus 460 --~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-------------------------------------~~v~llhg 500 (731)
T KOG0339|consen 460 --RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-------------------------------------FNVSLLHG 500 (731)
T ss_pred --HHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-------------------------------------ceeeeecC
Confidence 223344457899999999999999998877554 34677799
Q ss_pred CCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 803 gm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
.|.+.+|..++..|+.+...|||+|+++++|+|+|.+.-||+ ||.-. ++..+.||+||+||.| ..|.+
T Consensus 501 dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGva 568 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVA 568 (731)
T ss_pred chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--cccee
Confidence 999999999999999999999999999999999999999999 88765 8899999999999998 67999
Q ss_pred EEEeCCCcHHHHHHh
Q 000324 883 IIITGHSELRYYLSL 897 (1665)
Q Consensus 883 iil~~~~~~~~y~~l 897 (1665)
+.++++.+.++.-.+
T Consensus 569 yTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 569 YTLVTEKDAEFAGHL 583 (731)
T ss_pred eEEechhhHHHhhHH
Confidence 999999887654333
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=378.74 Aligned_cols=441 Identities=17% Similarity=0.187 Sum_probs=290.0
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000324 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (1665)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V 581 (1665)
..|..++.+++.+||+|+||||||+.....++.. .. + ...+|+++.|+|-.|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 3445567778889999999999999654444331 11 1 13478999999999999999988765 4555
Q ss_pred EEEECC-CcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc-cccCCchHHHHHHHHHHHHHhhccC
Q 000324 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (1665)
Q Consensus 582 ~~ltGd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~-l~d~rg~~le~iv~r~~~~~~~~~~ 659 (1665)
+..+|. ...+.+....++|+|+||+.+ ++.......++.+++|||||||. ..+ .+.++..+..... ..+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il~-~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLLP-RRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHHHHh-hCC
Confidence 555552 344444456799999999964 33333345789999999999994 332 2223332222222 346
Q ss_pred CeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc---hhHHHHHHHHHHHHHHHHHhCCCeE
Q 000324 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 660 ~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
+.|+|+||||+ +.+.++++++..+ ++...+ +..|+...|....... .......+...+.. +.. ...+++
T Consensus 211 dLKlIlmSATl-d~~~fa~~F~~ap---vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~-l~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATI-DPERFSRHFNNAP---IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDE-LFA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCc-CHHHHHHHhcCCC---EEEECC--CcccceeEEecccccccchhhhHHHHHHHHHHH-HHh-hCCCCE
Confidence 78999999999 4678888886543 444443 4445555555432211 11122222222222 111 246799
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
|||+++++++..++..|...... ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999998764311 12367789999999999997654
Q ss_pred hCCCCCeEEeccccccccCCCceEEEEecc----cccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~t----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
+..+|||||+++++|||+|++++||+.. ..||+.+|- ..++|.++|.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999953 567777652 25789999999999999986 8999999997
Q ss_pred CcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHH
Q 000324 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (1665)
Q Consensus 889 ~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (1665)
.+..... ....| .-+...|...+..-...|. . ++.-+. .+..+.
T Consensus 404 ~~~~~~~---~~~~P--EIlR~~L~~viL~l~~lg~-~--------------------di~~f~----------fldpP~ 447 (1283)
T TIGR01967 404 EDFNSRP---EFTDP--EILRTNLASVILQMLALRL-G--------------------DIAAFP----------FIEAPD 447 (1283)
T ss_pred HHHHhhh---hccCc--ccccccHHHHHHHHHhcCC-C--------------------Cccccc----------CCCCCC
Confidence 6543321 11112 1111222222222112221 1 111110 011111
Q ss_pred HHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhH
Q 000324 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (1665)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E 1048 (1665)
.+.|..|+..|...|+|+.++ +...+|++|+.+|.++++|...+++..+....|. .+++.|.|+-++ .++..|+.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 356889999999999997543 3367999999999999999999999988776664 556666555443 556666555
Q ss_pred HHH
Q 000324 1049 KME 1051 (1665)
Q Consensus 1049 ~~~ 1051 (1665)
+..
T Consensus 524 ~~~ 526 (1283)
T TIGR01967 524 KQQ 526 (1283)
T ss_pred hHH
Confidence 443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=325.07 Aligned_cols=326 Identities=21% Similarity=0.280 Sum_probs=249.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|+.++||||.+-+|.++.+.+ +|-.|-||||||++|.||++.........-.-....++..++|+|.|+||.|.++-+
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii 266 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII 266 (610)
T ss_pred cCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH
Confidence 7999999999999999998877 999999999999999999887654432111112235788999999999999999887
Q ss_pred HHhhccC------CcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CC
Q 000324 571 SNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR 639 (1665)
Q Consensus 571 ~~~~~~~------gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r 639 (1665)
..++..+ .++...+.|+.....+. ..+.||+|+||+++ |++.++.. .+.-.+++.+|||++|.| +|
T Consensus 267 e~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~---sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 267 EQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM---SLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc---cHHHHHHhhhhhHHHHhhccc
Confidence 7766533 36788899999877653 45889999999998 77777654 567789999999999999 78
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHH---
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF--- 716 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~--- 716 (1665)
...+..++..+ ....|.+++|||+| ..+..|.+....+ |+.+..--.|...-+.....
T Consensus 344 Eddir~iF~~F-------K~QRQTLLFSATMP--~KIQ~FAkSALVK----------PvtvNVGRAGAAsldViQevEyV 404 (610)
T KOG0341|consen 344 EDDIRTIFSFF-------KGQRQTLLFSATMP--KKIQNFAKSALVK----------PVTVNVGRAGAASLDVIQEVEYV 404 (610)
T ss_pred hhhHHHHHHHH-------hhhhheeeeecccc--HHHHHHHHhhccc----------ceEEecccccccchhHHHHHHHH
Confidence 88888877765 34568899999998 4566666554322 33322211111111111111
Q ss_pred HHHHHHHHHHHHHHhC--CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcC
Q 000324 717 QLMNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 717 ~~~~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
..-++++| +++... ..|+||||..+.++..+.++|--.+...
T Consensus 405 kqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEa---------------------------------- 448 (610)
T KOG0341|consen 405 KQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEA---------------------------------- 448 (610)
T ss_pred Hhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHcccee----------------------------------
Confidence 11122232 233333 5799999999999999988887655432
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 795 ~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
...|||-.++||....+.|+.|+-+|||||++++.|+|+|++.+||+ ||.|. .+..|+||+||+||.
T Consensus 449 ---vaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIENYVHRIGRTGRs 515 (610)
T KOG0341|consen 449 ---VAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIENYVHRIGRTGRS 515 (610)
T ss_pred ---EEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHHHHHHhcccCCC
Confidence 34599999999999999999999999999999999999999999999 99887 789999999999999
Q ss_pred CCCCceEEEEEeCCCc
Q 000324 875 QYDSYGEGIIITGHSE 890 (1665)
Q Consensus 875 g~d~~G~~iil~~~~~ 890 (1665)
| +.|.+..|.+...
T Consensus 516 g--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 516 G--KTGIATTFINKNQ 529 (610)
T ss_pred C--Ccceeeeeecccc
Confidence 8 8899998887754
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=365.28 Aligned_cols=310 Identities=20% Similarity=0.260 Sum_probs=228.6
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+| ++|++|.+|++.++.+ ..++++|||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 449 ~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 449 PF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVAVLVPTTLLAQQH 516 (926)
T ss_pred CC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEEEEeCcHHHHHHH
Confidence 56 5999999999999875 2469999999999999999999988754 34799999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
++.|+++++.+++++..++|..+...+. ...++|||+||. .+. +. ..++++++|||||+|+++
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~---ll~-~~---v~f~~L~llVIDEahrfg--- 586 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK---LLQ-KD---VKFKDLGLLIIDEEQRFG--- 586 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH---Hhh-CC---CCcccCCEEEeecccccc---
Confidence 9999999998899999999987643221 125899999995 232 21 356889999999999853
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1665)
......+ .....++++++||||+. ...+...+.......++...+.. ..++...+.... . ..+
T Consensus 587 -v~~~~~L-------~~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~-R~~V~t~v~~~~---~----~~i 649 (926)
T TIGR00580 587 -VKQKEKL-------KELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPED-RLPVRTFVMEYD---P----ELV 649 (926)
T ss_pred -hhHHHHH-------HhcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCC-ccceEEEEEecC---H----HHH
Confidence 2222222 23456789999999953 34444333221111122222221 223443333221 1 111
Q ss_pred HHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEE
Q 000324 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (1665)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (1665)
...+.. ....+++++|||++++.+..++..|..... ...++.
T Consensus 650 ~~~i~~---el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~ 691 (926)
T TIGR00580 650 REAIRR---ELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAI 691 (926)
T ss_pred HHHHHH---HHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEE
Confidence 111111 123478999999999999999888876421 135889
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCc
Q 000324 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 800 ~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (1665)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. ++..+|.||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999999998 66654 36778999999999987 78
Q ss_pred eEEEEEeCCC
Q 000324 880 GEGIIITGHS 889 (1665)
Q Consensus 880 G~~iil~~~~ 889 (1665)
|.||+++++.
T Consensus 761 g~aill~~~~ 770 (926)
T TIGR00580 761 AYAYLLYPHQ 770 (926)
T ss_pred eEEEEEECCc
Confidence 9999998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.61 Aligned_cols=341 Identities=18% Similarity=0.259 Sum_probs=255.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEccc
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 Lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ 559 (1665)
|++.+.++. .||..+|-||+.+||-++++.+ ++..|.||||||.+|++|+++.+......+ -...++.+++++||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPT 102 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEech
Confidence 444555554 5999999999999999999875 999999999999999999999998765432 23457789999999
Q ss_pred HHHHHHHHHHHHHhhccCC--cEEEEEECCCcccHh---hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccc
Q 000324 560 KALVAEVVGNLSNRLQMYD--VKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 560 raLa~q~~~~~~~~~~~~g--i~V~~ltGd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH 633 (1665)
|+||+|++..+.++...++ +++.-++.+++-+.. ....++|+|+||.++ ..+.-... ..+..++++|+||||
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~--~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL--EYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc--hhhhheeeEEechhh
Confidence 9999999999988766443 555556655543332 346899999999996 33333222 578889999999999
Q ss_pred cccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCcc--ccceEEEEeeec
Q 000324 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRP--VPLSQQYIGIQV 709 (1665)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rp--v~l~~~~~~~~~ 709 (1665)
++.. ++...+..+. ..+++..|.++||||+.+ ...+...+..+|. +..+....-| ..+.|+++.+.+
T Consensus 181 LllsfGYeedlk~l~-------~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv--iLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLR-------SHLPRIYQCFLMSATLSDDVQALKKLFLHNPV--ILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHH-------HhCCchhhheeehhhhhhHHHHHHHHhccCCe--EEEeccccCCCcccceEEEEEecc
Confidence 9986 4433333333 345788899999999973 3333333333332 3344444333 567777776664
Q ss_pred CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 710 ~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
... +.. +|..+.-..-.+++||||||...|.++-..|...++..
T Consensus 252 ~DK---fll----lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiks----------------------------- 295 (569)
T KOG0346|consen 252 EDK---FLL----LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKS----------------------------- 295 (569)
T ss_pred chh---HHH----HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHh-----------------------------
Confidence 432 221 22222222226899999999999999998888776543
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccc-----------------------------------ccccc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT-----------------------------------LAWGV 834 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~t-----------------------------------la~GV 834 (1665)
.++.|.|+..-|..+++.|..|..+++|||+. .+|||
T Consensus 296 --------ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 296 --------CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred --------hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 34489999999999999999999999999981 46999
Q ss_pred CCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 835 dlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
|+..|..||+ ||.|. ++..|+||+||++|.+ +.|.++.++.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 99887 8999999999999987 889999999886644
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=359.94 Aligned_cols=307 Identities=23% Similarity=0.313 Sum_probs=220.4
Q ss_pred CCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
| +||++|.++++.+..+- .|+|++||||||||.+|+++++..+.. +.+++|++||++||.|++
T Consensus 260 f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 260 F-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQHY 327 (681)
T ss_pred C-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHHH
Confidence 5 69999999999988753 379999999999999999999988743 458999999999999999
Q ss_pred HHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCc
Q 000324 568 GNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRG 640 (1665)
Q Consensus 568 ~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg 640 (1665)
+.+++++..+|++|..++|+.+...+. ...++|+|+||+.+. ....+.+++++||||+|.+...
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~-- 398 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVE-- 398 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHH--
Confidence 999999999999999999998754321 125899999998642 1134678999999999986421
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHH
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 720 (1665)
.... +......+++++||||.. ...++.............-.+..| .|+...+.. .... .
T Consensus 399 --qr~~-------l~~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~--~~~~----~--- 458 (681)
T PRK10917 399 --QRLA-------LREKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGR-KPITTVVIP--DSRR----D--- 458 (681)
T ss_pred --HHHH-------HHhcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCC-CCcEEEEeC--cccH----H---
Confidence 1111 112345688999999953 344332222111111111111111 133333322 1111 1
Q ss_pred HHHHHHHHHH-hCCCeEEEEecChhHHHH--------HHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 721 DLCYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 721 ~~~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.+++.+... ..+++++|||+..++... +++.|. .
T Consensus 459 -~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~------------------------------------~ 501 (681)
T PRK10917 459 -EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQ------------------------------------E 501 (681)
T ss_pred -HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHH------------------------------------H
Confidence 112222222 347799999997654432 222222 1
Q ss_pred hc-CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcc
Q 000324 792 LL-PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1665)
Q Consensus 792 ll-~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GR 870 (1665)
.+ ...++++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||. |+++. .+...+.||+||
T Consensus 502 ~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GR 572 (681)
T PRK10917 502 AFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGR 572 (681)
T ss_pred HCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhc
Confidence 12 256999999999999999999999999999999999999999999999998 88775 367889999999
Q ss_pred cCCCCCCCceEEEEEeCC
Q 000324 871 AGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (1665)
+||.| ..|.|+++++.
T Consensus 573 vGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 573 VGRGA--AQSYCVLLYKD 588 (681)
T ss_pred ccCCC--CceEEEEEECC
Confidence 99987 78999999964
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=316.82 Aligned_cols=281 Identities=22% Similarity=0.294 Sum_probs=225.2
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
++.++++++.-. +|..|++||++++|.++.|+| ||..|.||||||.+|.+||++++.+.+.. ++++|++||||||.
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p~~--~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEPKL--FFALVLTPTRELAQ 143 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCCCC--ceEEEecCcHHHHH
Confidence 455677777765 799999999999999999888 99999999999999999999999995433 59999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
|+...+. .++...|+++..+.||.... ..+.+++||+||||+++.+++...+ ...+..++++|+||||+++++.
T Consensus 144 QI~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tk-gf~le~lk~LVlDEADrlLd~d- 220 (476)
T KOG0330|consen 144 QIAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTK-GFSLEQLKFLVLDEADRLLDMD- 220 (476)
T ss_pred HHHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhcc-CccHHHhHHHhhchHHhhhhhh-
Confidence 9999999 89999999999999998765 4467889999999999999887533 3568899999999999999876
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
|...+.+|...++...|.+++|||++..- .+. ... -.+|+.+.+.-.....++..+.+..+.
T Consensus 221 -----F~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~---ras---------l~~p~~v~~s~ky~tv~~lkQ~ylfv~ 283 (476)
T KOG0330|consen 221 -----FEEELDYILKVIPRERQTFLFSATMTKKVRKLQ---RAS---------LDNPVKVAVSSKYQTVDHLKQTYLFVP 283 (476)
T ss_pred -----hHHHHHHHHHhcCccceEEEEEeecchhhHHHH---hhc---------cCCCeEEeccchhcchHHhhhheEecc
Confidence 66777777788899999999999998742 222 111 113444433333333334433332222
Q ss_pred ---hhH-HHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1561 ---KPT-FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1561 ---k~~-~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
|++ +-.|+.+ ..+.++||||+|...++.++..| ..+++..
T Consensus 284 ~k~K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L-----------------------------------~~lg~~a 327 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLL-----------------------------------RNLGFQA 327 (476)
T ss_pred ccccchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHH-----------------------------------HhcCcce
Confidence 222 3345555 56789999999999999999766 4577778
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+||.|++..|.-.++.|++|...||||
T Consensus 328 ~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~ 356 (476)
T KOG0330|consen 328 IPLHGQMSQSKRLGALNKFKAGARSILVC 356 (476)
T ss_pred ecccchhhHHHHHHHHHHHhccCCcEEEe
Confidence 89999999999999999999999999999
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=351.07 Aligned_cols=363 Identities=21% Similarity=0.335 Sum_probs=277.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
||..++|||.+|+|+++.+.+ ||..|-||||||++|.||+++++...+... ..+++.+|+++|||+||.|+.+.+.
T Consensus 384 ~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 384 GYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred cCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHHH
Confidence 789999999999999998877 999999999999999999998887654322 1258899999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccHhh---hccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
++++.+|+++...+|+...+.+. ...+.|+||||+++ |.+.-.......+.++.++|+||+|.|.+ .+-|..-.|
T Consensus 460 kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~I 539 (997)
T KOG0334|consen 460 KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRI 539 (997)
T ss_pred HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchH
Confidence 99999999999999999887763 24699999999995 88888877777788888999999999998 677877666
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCc-cccceEEEEeeecCchhHHHHHHHHHHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1665)
+.++ ++..|.|.+|||+|. .+.++.-....|.. ..+...-. --.+.+.+..+.. ...++..+.++
T Consensus 540 i~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~eL-- 606 (997)
T KOG0334|consen 540 LQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLEL-- 606 (997)
T ss_pred Hhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC--chHHHHHHHHH--
Confidence 5544 678899999999986 34444444444322 22222111 1123333333331 11223322222
Q ss_pred HHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC
Q 000324 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (1665)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm 804 (1665)
+.......++||||.+...|..+.+.|...+..+.. +|||.
T Consensus 607 --l~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~s-------------------------------------lHGgv 647 (997)
T KOG0334|consen 607 --LGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDS-------------------------------------LHGGV 647 (997)
T ss_pred --HHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhh-------------------------------------hcCCC
Confidence 233334789999999999999999999876655433 39999
Q ss_pred CHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 805 ~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
++.+|..+++.|++|.+++||||+++++|+|++...+||+ ||.+. -..+|+||+||+||+| ..|.|+.
T Consensus 648 ~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Avt 715 (997)
T KOG0334|consen 648 DQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAVT 715 (997)
T ss_pred chHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeEE
Confidence 9999999999999999999999999999999999999999 99988 4667999999999998 8999999
Q ss_pred EeCCCcHHHHHH----hhcCCCccccchhHhhHHHHHHHHHhc
Q 000324 885 ITGHSELRYYLS----LMNQQLPIESQFVSKLADQLNAEIVLG 923 (1665)
Q Consensus 885 l~~~~~~~~y~~----ll~~~~piES~l~~~l~d~lnaeI~~g 923 (1665)
|.++.+..+--. +.....|+. .++..+..-+.++...|
T Consensus 716 Fi~p~q~~~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 716 FITPDQLKYAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred EeChHHhhhHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 999855443221 222222222 55555655555555544
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=357.76 Aligned_cols=312 Identities=24% Similarity=0.339 Sum_probs=220.5
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+| +||++|.+|++.++.+- .|.+++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHH
Confidence 46 79999999999988652 368999999999999999999988753 45799999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
++.+++.++.+|+++..++|+.....+. ..+++|+|+||+.+. . ...+.++++|||||+|.++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999998999999999998765421 135799999998542 1 1346789999999999864321
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1665)
...+. .. ......+++++||||... ..++..+............+..| .|+...+.. ... +
T Consensus 374 ----r~~l~---~~-~~~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~--~~~---~---- 434 (630)
T TIGR00643 374 ----RKKLR---EK-GQGGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIK--HDE---K---- 434 (630)
T ss_pred ----HHHHH---Hh-cccCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeC--cch---H----
Confidence 11111 10 001126789999999543 33332221111111111111111 233333321 111 1
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecChhHHHHH--------HHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhh
Q 000324 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (1665)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (1665)
..++..+.+. ..+++++|||+..++...+ ++.|.+.
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 2233334333 3478999999987554332 2222111
Q ss_pred hhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcc
Q 000324 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (1665)
Q Consensus 791 ~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GR 870 (1665)
+-...|+++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. |+++. ++..+|.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 12356999999999999999999999999999999999999999999999998 88764 367899999999
Q ss_pred cCCCCCCCceEEEEEeCC
Q 000324 871 AGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (1665)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99987 78999999843
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=328.99 Aligned_cols=441 Identities=16% Similarity=0.184 Sum_probs=315.7
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEEEE
Q 000324 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584 (1665)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~~l 584 (1665)
.+++.++.+||.|+||||||+.....+...-.. ...+|.+..|+|-.|..+++++....+ .+|-.|+..
T Consensus 61 ~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 61 YAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----------cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 456788999999999999999776665554322 133599999999999999999987554 344445443
Q ss_pred ECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEE
Q 000324 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (1665)
Q Consensus 585 tGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV 664 (1665)
.. +++.....+.|.+.|.+ +|+|.....+.++++++||+|||| +|.-..+.++.-+.+. -+..+..|+|
T Consensus 131 IR---Fed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki-~~~R~~LklI 199 (674)
T KOG0922|consen 131 IR---FEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKI-LKKRPDLKLI 199 (674)
T ss_pred EE---ecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHH-HhcCCCceEE
Confidence 32 23333347999999999 788888777899999999999999 5555556566544443 3456789999
Q ss_pred EEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChh
Q 000324 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (1665)
Q Consensus 665 ~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (1665)
.+|||+ |.+.+..|++..+ ++... .|..|++..|..-+.. ....+....+.+ ++...+.+.+|||.+.++
T Consensus 200 imSATl-da~kfS~yF~~a~---i~~i~--GR~fPVei~y~~~p~~---dYv~a~~~tv~~-Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 200 IMSATL-DAEKFSEYFNNAP---ILTIP--GRTFPVEILYLKEPTA---DYVDAALITVIQ-IHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEeeee-cHHHHHHHhcCCc---eEeec--CCCCceeEEeccCCch---hhHHHHHHHHHH-HHccCCCCCEEEEeCCHH
Confidence 999999 7899999998754 44444 4555666655542222 222222222333 333455789999999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeE
Q 000324 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (1665)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VL 824 (1665)
+.+.+++.|.+........ .+.-+...||.|+.+++..|++.-..|..+|+
T Consensus 270 EIe~~~~~l~e~~~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvI 320 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVI 320 (674)
T ss_pred HHHHHHHHHHHHhhhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceEE
Confidence 9999999998875332211 01124567999999999999999999999999
Q ss_pred EeccccccccCCCceEEEEec----ccccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHH
Q 000324 825 VSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~----t~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
+||++++..|.+|++.+||+. ...|+|..|. .+++|.++..||.|||||.| .|.||.+++.++ |.+
T Consensus 321 lsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~ 394 (674)
T KOG0922|consen 321 LSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDK 394 (674)
T ss_pred EEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hhh
Confidence 999999999999999999995 5679998873 47899999999999999986 899999999766 355
Q ss_pred hhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000324 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (1665)
Q Consensus 897 ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (1665)
+..++.|-.. ...|...+..-.++| ..||.-+... +.+..+.+.+|+
T Consensus 395 ~~~~~~PEI~--R~~Ls~~vL~Lkalg---------------------i~d~l~F~f~----------d~P~~~~l~~AL 441 (674)
T KOG0922|consen 395 MPLQTVPEIQ--RVNLSSAVLQLKALG---------------------INDPLRFPFI----------DPPPPEALEEAL 441 (674)
T ss_pred cccCCCCcee--eechHHHHHHHHhcC---------------------CCCcccCCCC----------CCCChHHHHHHH
Confidence 6555555111 112222222211222 1223222211 112235678999
Q ss_pred HHHhHcCCcccccCCCccccCh-HHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHH
Q 000324 977 TILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (1665)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l 1052 (1665)
..|...|.|+.+ | .+|+ +|+.||.++++|...++...+-...|+ .+++.+.|+-+ -.++..|..++..-
T Consensus 442 ~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 442 EELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKKAE 511 (674)
T ss_pred HHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchhhh
Confidence 999999999843 4 4555 999999999999999999988777776 67787777765 56777777665544
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=336.48 Aligned_cols=327 Identities=21% Similarity=0.315 Sum_probs=250.4
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHH
Q 000324 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1665)
Q Consensus 486 ~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q 565 (1665)
++..| |+..|++-|.++|..++.+ +++|+..|||+||++||.+|.+-. .+-+|+|.|..+|...
T Consensus 9 L~~~f-Gy~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~--------------~G~TLVVSPLiSLM~D 72 (590)
T COG0514 9 LKQVF-GYASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL--------------EGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHh-CccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc--------------CCCEEEECchHHHHHH
Confidence 44445 7999999999999999988 559999999999999999998754 1258999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhH--HHHHhhcCCCccccceeEEEEecccccc
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~liIiDEaH~l~ 636 (1665)
+++.+... |+.+..+.+..+..... ....++++-+||++ ..+.+... -..+.+++||||||+.
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHh
Confidence 99998764 78888887775544321 13579999999996 22222211 3458899999999997
Q ss_pred c---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCc
Q 000324 637 D---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711 (1665)
Q Consensus 637 d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~ 711 (1665)
. +|.|.|..+-.-. ... +++.+++||||.++ ..|+..-|+... ...+..+-.||. +...+ ....+
T Consensus 145 qWGhdFRP~Y~~lg~l~----~~~-~~~p~~AlTATA~~~v~~DI~~~L~l~~--~~~~~~sfdRpN-i~~~v--~~~~~ 214 (590)
T COG0514 145 QWGHDFRPDYRRLGRLR----AGL-PNPPVLALTATATPRVRDDIREQLGLQD--ANIFRGSFDRPN-LALKV--VEKGE 214 (590)
T ss_pred hcCCccCHhHHHHHHHH----hhC-CCCCEEEEeCCCChHHHHHHHHHhcCCC--cceEEecCCCch-hhhhh--hhccc
Confidence 6 4778877554422 233 38899999999875 467888887653 223334444552 11111 11111
Q ss_pred hhHHHHHHHHHHHHHHHH--HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 712 PLQRFQLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
...+ .. .+.+ ....++.||||.||+.++.+|.+|...+
T Consensus 215 ~~~q------~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g-------------------------------- 254 (590)
T COG0514 215 PSDQ------LA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNG-------------------------------- 254 (590)
T ss_pred HHHH------HH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCC--------------------------------
Confidence 1111 11 1221 3336679999999999999999998864
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
..++++||||+..+|..+++.|..+.++|+|||.++++|||-|++++||| ||.|. |+.+|.|-+|
T Consensus 255 -----~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~G 319 (590)
T COG0514 255 -----ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETG 319 (590)
T ss_pred -----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHh
Confidence 23688899999999999999999999999999999999999999999999 99987 9999999999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
||||.| ...+|++++++.+......++....|
T Consensus 320 RAGRDG--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 320 RAGRDG--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred hccCCC--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 999999 88999999999998877777777666
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=328.91 Aligned_cols=329 Identities=18% Similarity=0.281 Sum_probs=254.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|..+++||..|||.++.+-+ +||.|..|+|||++|...+++.+... .....+++++|||++|.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4789999999999999988766 99999999999999998888876442 23568999999999999999999
Q ss_pred HHhhcc-CCcEEEEEECCCcccHh--hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCchHHHH
Q 000324 571 SNRLQM-YDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (1665)
Q Consensus 571 ~~~~~~-~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~ 645 (1665)
.+.... .|.+|..+.||+..... .+++++|+|+||+++..|..... ...++++|+|+||||.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 987763 48999999999876543 56799999999999876665543 4678999999999999987 35555554
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCC-ccccceEEEEeeecC-chhHHHHHHHH
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVK-KPLQRFQLMND 721 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~-~~~~~~~~~~~ 721 (1665)
|+. .++...|++++|||-|. ...+++|++.. .++.|..+. .-.-+.|+++..... ...+.+..+..
T Consensus 192 ii~-------slP~~rQv~a~SATYp~nLdn~Lsk~mrdp---~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 192 IIN-------SLPQIRQVAAFSATYPRNLDNLLSKFMRDP---ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred HHH-------hcchhheeeEEeccCchhHHHHHHHHhccc---ceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 444 45778999999999984 23455666532 133333221 122445555544333 22333333333
Q ss_pred HHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEec
Q 000324 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1665)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~H 801 (1665)
.+ ..+....+-.|.||||+....|+.+|..|...++. +-+..
T Consensus 262 ~L-~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d-------------------------------------~~~IS 303 (980)
T KOG4284|consen 262 KL-THVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD-------------------------------------VTFIS 303 (980)
T ss_pred HH-HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC-------------------------------------eEEec
Confidence 22 23444455679999999999999999999876644 45568
Q ss_pred CCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceE
Q 000324 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1665)
Q Consensus 802 agm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (1665)
|.|++.+|..+++.++.-+++|||+|+..+||||-|.+.+||+ .|++. +-.+|+||+|||||-| ..|.
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~p~------d~eTY~HRIGRAgRFG--~~G~ 371 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----IDAPA------DEETYFHRIGRAGRFG--AHGA 371 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cCCCc------chHHHHHHhhhccccc--ccce
Confidence 9999999999999999999999999999999999999999999 67664 6678999999999976 8999
Q ss_pred EEEEeCCCc
Q 000324 882 GIIITGHSE 890 (1665)
Q Consensus 882 ~iil~~~~~ 890 (1665)
+|.++...+
T Consensus 372 aVT~~~~~~ 380 (980)
T KOG4284|consen 372 AVTLLEDER 380 (980)
T ss_pred eEEEeccch
Confidence 999887744
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=326.81 Aligned_cols=339 Identities=21% Similarity=0.276 Sum_probs=247.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|..++|+|.+++|.++.. .+++.|||||||||++|.+||+..+....... ...+.+++|+.|||+||.|++.++
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~-r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~---~~~gl~a~Il~ptreLa~Qi~re~ 229 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEK-RDVLACAPTGSGKTLAFNLPILQHLKDLSQEK---HKVGLRALILSPTRELAAQIYREM 229 (593)
T ss_pred CCCCCCCcccchhhhhhhcc-cceEEeccCCCcchhhhhhHHHHHHHHhhccc---CccceEEEEecchHHHHHHHHHHH
Confidence 68999999999999988776 45999999999999999999999998764211 235789999999999999999999
Q ss_pred HHhh--ccCCcEEEEEECCCcccHh----hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 571 SNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 571 ~~~~--~~~gi~V~~ltGd~~~~~~----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
.++. ...+.++..+......... ....++|+|+||-++-.+.....-...+..|.++|+||++++.+. ..+-
T Consensus 230 ~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~--~~f~ 307 (593)
T KOG0344|consen 230 RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP--EFFV 307 (593)
T ss_pred HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh--hhHH
Confidence 9877 4555666666554332221 234689999999986444444332346788999999999999764 1233
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCcc---ccceEEEEeeecCchhHHHHHHHH
Q 000324 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
.-++.+...+ ..+.+++-+||||++ ..+.+|......... ...-..++ ..+.|..+.+... . .++.++.+
T Consensus 308 ~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~-~vivg~~~sa~~~V~QelvF~gse-~-~K~lA~rq 380 (593)
T KOG0344|consen 308 EQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSDLK-RVIVGLRNSANETVDQELVFCGSE-K-GKLLALRQ 380 (593)
T ss_pred HHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhccce-eEEEecchhHhhhhhhhheeeecc-h-hHHHHHHH
Confidence 3333333322 247888899999987 578888876532211 11111121 1222222222211 1 11222111
Q ss_pred HHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEec
Q 000324 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (1665)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~H 801 (1665)
.+ ...-..|+||||.+.+.|..+...|... + .-.|++.|
T Consensus 381 ----~v-~~g~~PP~lIfVQs~eRak~L~~~L~~~----~--------------------------------~i~v~vIh 419 (593)
T KOG0344|consen 381 ----LV-ASGFKPPVLIFVQSKERAKQLFEELEIY----D--------------------------------NINVDVIH 419 (593)
T ss_pred ----HH-hccCCCCeEEEEecHHHHHHHHHHhhhc----c--------------------------------CcceeeEe
Confidence 11 1112679999999999999888877411 0 12478889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceE
Q 000324 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1665)
Q Consensus 802 agm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (1665)
|..++.+|..+++.|+.|++.||+||++++||+|+.++..||+ ||.+. |..+|+||+||+||+| +.|.
T Consensus 420 ~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGRtgRag--~~g~ 487 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGRTGRAG--RSGK 487 (593)
T ss_pred cccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhccCCCC--CCcc
Confidence 9999999999999999999999999999999999999999999 99887 8999999999999998 8999
Q ss_pred EEEEeCCCcHHHHH
Q 000324 882 GIIITGHSELRYYL 895 (1665)
Q Consensus 882 ~iil~~~~~~~~y~ 895 (1665)
||.+++..+..+..
T Consensus 488 Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 488 AITFYTDQDMPRIR 501 (593)
T ss_pred eEEEeccccchhhh
Confidence 99999997766654
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=345.21 Aligned_cols=297 Identities=22% Similarity=0.301 Sum_probs=240.3
Q ss_pred cccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHH
Q 000324 1325 TALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Ptre 1401 (1665)
..|++...+.+...|..|||.|.+||+.++.| .|+||+||||||||++|.||++..+.... +..+..+|||+|.||
T Consensus 6 ~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G-~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 6 NILDPRVREWFKRKFTSLTPPQRYAIPEIHSG-ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hhcCHHHHHHHHHhcCCCCHHHHHHHHHHhCC-CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 44556666666668999999999999999974 55999999999999999999999998852 334579999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC-
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG- 1477 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~- 1477 (1665)
|.+++..++. ..+..+|+.|...+|+++...+ ..+.+||+|+|||.+..++..-+.+..+.+|+++||||+|.+.
T Consensus 85 Ln~Di~~rL~-~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLE-EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHH-HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 9999999999 6677889999999999987633 3345699999999998888765677889999999999999776
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccC-CcEEecCCCCCccceEEEEeecccchhhHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~-~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
+.+|..+...+.|++.+.. +.|.||||||..+..++++|++... .....-.+..++..+.+..........
T Consensus 164 sKRG~~Lsl~LeRL~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~---- 235 (814)
T COG1201 164 SKRGVQLALSLERLRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD---- 235 (814)
T ss_pred cccchhhhhhHHHHHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----
Confidence 4789999999999998753 8999999999999999999998875 333333344455555554433332222
Q ss_pred HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1557 ~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
.......+..+.......+.+|||+|||.+|+.++..|. ......|
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~----------------------------------~~~~~~i 281 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLK----------------------------------KLGPDII 281 (814)
T ss_pred cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHH----------------------------------HhcCCce
Confidence 222344555566666667899999999999999998873 2233679
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..|||.++.+.|..+++.|++|.++++||
T Consensus 282 ~~HHgSlSre~R~~vE~~lk~G~lravV~ 310 (814)
T COG1201 282 EVHHGSLSRELRLEVEERLKEGELKAVVA 310 (814)
T ss_pred eeecccccHHHHHHHHHHHhcCCceEEEE
Confidence 99999999999999999999999999999
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=341.01 Aligned_cols=327 Identities=18% Similarity=0.180 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHH---------HHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI---------LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~i---------l~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
.+|.++++.+.++ +++|++|+||||||.+....+ +..+..-. . .....++++++|||+||.|+..
T Consensus 167 ~iQ~qil~~i~~g-kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-~----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISR-KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-P----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhC-CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-c----ccCCcEEEEECcHHHHHHHHHH
Confidence 4899999998766 459999999999999844333 33222110 0 1124589999999999999999
Q ss_pred HHHHhhcc---CCcEEEEEECCCccc--HhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHH
Q 000324 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1665)
Q Consensus 569 ~~~~~~~~---~gi~V~~ltGd~~~~--~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1665)
++.+.++. .|..|....|+.... .......+|+|+|+.. ....++.+++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876653 367788899988632 1122357899999762 1135778999999999987643 3333
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCch--hHHHHHHH
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKP--LQRFQLMN 720 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~--~~~~~~~~ 720 (1665)
..++... .+...|+++||||++. .+.+..|++.. ..+.... ....|+++.++....... ......-.
T Consensus 311 L~llk~~------~~~~rq~ILmSATl~~dv~~l~~~~~~p---~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 311 IAVARKH------IDKIRSLFLMTATLEDDRDRIKEFFPNP---AFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHh------hhhcCEEEEEccCCcHhHHHHHHHhcCC---cEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHH
Confidence 3333322 1223489999999983 55677777532 2233322 112566666654321100 00000001
Q ss_pred HHHHHHHHHH--hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEE
Q 000324 721 DLCYEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (1665)
Q Consensus 721 ~~~~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (1665)
..+...+... ..++++||||+++.++..+++.|..... ...+.
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~ 425 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFY 425 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEE
Confidence 1112222222 1256899999999999999998876420 12367
Q ss_pred EecCCCCHHHHHHHHHHH-hCCCCCeEEeccccccccCCCceEEEEecccccCCC--CCCcccCCHHHHHhhhcccCCCC
Q 000324 799 IHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F-~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~--~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||+....+.|. .|...++|.++|.||+|||||.
T Consensus 426 ~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 426 IIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred eccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 789999975 4555666 789999999999999999999999999965444432 3445678999999999999997
Q ss_pred CCCceEEEEEeCCCc
Q 000324 876 YDSYGEGIIITGHSE 890 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~ 890 (1665)
..|.|+.+++..+
T Consensus 503 --~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 --SPGTYVYFYDLDL 515 (675)
T ss_pred --CCCeEEEEECHHH
Confidence 4799999998765
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=358.71 Aligned_cols=310 Identities=19% Similarity=0.263 Sum_probs=224.4
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+| .+|++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|+
T Consensus 598 ~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 598 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQH 665 (1147)
T ss_pred CC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHH
Confidence 35 7999999999998875 2569999999999999999988876542 45899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCCcccHhh--h-----ccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ--I-----EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~~~~~~--~-----~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
++.|.+++..+++++..++|..+...+. + ..++|+|+||+. + ++. ..++++++|||||+|+++.
T Consensus 666 ~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L-~~~---v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 666 YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---L-QSD---VKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---H-hCC---CCHhhCCEEEEechhhcch--
Confidence 9999999988889999999987654432 1 368999999973 2 221 2457899999999998732
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHH
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 719 (1665)
..... +...+.++++++||||+.+ ..+...+........+...+. ...++...+..+. .. . +
T Consensus 737 --~~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~gl~d~~~I~~~p~-~r~~v~~~~~~~~--~~-~----~ 798 (1147)
T PRK10689 737 --RHKER-------IKAMRADVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPA-RRLAVKTFVREYD--SL-V----V 798 (1147)
T ss_pred --hHHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhhCCCcEEEecCCC-CCCCceEEEEecC--cH-H----H
Confidence 11111 2234678999999999643 222211111111112222222 2223433322211 10 0 0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEE
Q 000324 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (1665)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (1665)
...+ ..+...+++++||||+++.+..++..|..... ..+|+.
T Consensus 799 k~~i---l~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~ 840 (1147)
T PRK10689 799 REAI---LREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAI 840 (1147)
T ss_pred HHHH---HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEE
Confidence 1111 12223478999999999999999988876421 135888
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCc
Q 000324 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 800 ~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (1665)
+||+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++..+|+||+||+||.| ..
T Consensus 841 lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~ 909 (1147)
T PRK10689 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQ 909 (1147)
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--Cc
Confidence 999999999999999999999999999999999999999999985 33332 36678999999999987 78
Q ss_pred eEEEEEeCCC
Q 000324 880 GEGIIITGHS 889 (1665)
Q Consensus 880 G~~iil~~~~ 889 (1665)
|.|++++...
T Consensus 910 g~a~ll~~~~ 919 (1147)
T PRK10689 910 AYAWLLTPHP 919 (1147)
T ss_pred eEEEEEeCCC
Confidence 9999998754
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=329.03 Aligned_cols=280 Identities=20% Similarity=0.281 Sum_probs=216.8
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh----cCCCCeEEEEEcccHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~----~~~~~~r~l~I~Ptre 1401 (1665)
|..+....+.. ||..|+|||.+++|.++.|+| ++..|.||||||++|++|++.++... ....+|++||++||||
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 34455666665 899999999999999999888 99999999999999999999999862 1333579999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
||.|+..++. .|+..++++..+++|+.+...+ +.++.+|+||||+++.+++.. +...++++.++|+||||+|++
T Consensus 177 LA~QV~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 177 LAVQVQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLD 253 (519)
T ss_pred HHHHHHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhc
Confidence 9999999999 8888888999999999887633 445679999999999999987 677899999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhcC-CCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeec----ccchh
Q 000324 1479 QGGPVLEVIVSRMRYIASQVE-NKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV----DITNF 1552 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~-~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~----~~~~~ 1552 (1665)
++ |-..++.|..+++ +..|++++|||.|. .+.++.-+-... +.+.+-.. ...++
T Consensus 254 mG------Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~--------------~~i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 254 MG------FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNP--------------IQINVGNKKELKANHNI 313 (519)
T ss_pred cc------cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCc--------------eEEEecchhhhhhhcch
Confidence 88 7788888888884 44579999999987 445655443322 11111111 01111
Q ss_pred hHHHHhcChh----HHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHH
Q 000324 1553 EARMQAMTKP----TFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (1665)
Q Consensus 1553 ~~~~~~~~k~----~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (1665)
.+........ .+..++... ....++||||+|++.|..++..|.
T Consensus 314 ~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~------------------------------- 362 (519)
T KOG0331|consen 314 RQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLR------------------------------- 362 (519)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHH-------------------------------
Confidence 1111111111 122222222 345689999999999999997772
Q ss_pred HHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1627 ~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++++..+||+.++.+|..+++.|++|+..||||
T Consensus 363 ----~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVA 397 (519)
T KOG0331|consen 363 ----RKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVA 397 (519)
T ss_pred ----hcCcceeeecccccHHHHHHHHHhcccCCcceEEE
Confidence 23477999999999999999999999999999998
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=341.45 Aligned_cols=430 Identities=18% Similarity=0.204 Sum_probs=307.9
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEE
Q 000324 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (1665)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V 581 (1665)
.-+-.++..+..++|+||||||||+...+.++..... .+.+|+++.|+|--|..+++++.+.++ .++
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~ 122 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKL 122 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCc
Confidence 3445567788889999999999999988888876541 245899999999999999999988765 334
Q ss_pred EEEEC-CCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCC
Q 000324 582 RELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH 660 (1665)
Q Consensus 582 ~~ltG-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~ 660 (1665)
+..+| -..++......+.|-++|.+ +|+|.......++.+++|||||+| +|.-..+.++.-+.......+.+
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCC
Confidence 44333 12233334457999999999 777777777889999999999999 67777777888777766776778
Q ss_pred eeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 000324 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (1665)
Q Consensus 661 ~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv 740 (1665)
.|+|.||||+ |.+.++.+++..| + +..+.|..|++.+|........ .....+...+.. ....+.+.+|||.
T Consensus 196 LKiIimSATl-d~~rfs~~f~~ap---v--i~i~GR~fPVei~Y~~~~~~d~-~l~~ai~~~v~~--~~~~~~GdILvFL 266 (845)
T COG1643 196 LKLIIMSATL-DAERFSAYFGNAP---V--IEIEGRTYPVEIRYLPEAEADY-ILLDAIVAAVDI--HLREGSGSILVFL 266 (845)
T ss_pred ceEEEEeccc-CHHHHHHHcCCCC---E--EEecCCccceEEEecCCCCcch-hHHHHHHHHHHH--hccCCCCCEEEEC
Confidence 9999999999 7899999998654 3 4445566777766643322211 122222222211 1122378999999
Q ss_pred cChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000324 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (1665)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~ 820 (1665)
+...+...+++.|.+..... ..-|..+||.|+.+++..+++.-..|.
T Consensus 267 pG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 267 PGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred CcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 99999999999998721110 123677899999999999999999998
Q ss_pred CCeEEeccccccccCCCceEEEEec----ccccCCCCCC----cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 821 VQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
.+|++||++++.++.+|++++||++ ...||+..|- .+++|.++..||.|||||.+ .|.||-+++.++
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~-- 388 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED-- 388 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH--
Confidence 8899999999999999999999995 4578988873 37899999999999999985 899999999744
Q ss_pred HHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHH
Q 000324 893 YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972 (1665)
Q Consensus 893 ~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li 972 (1665)
|..+...+.| ||....+. ..+-.+.. ..+..+|..+ +.++.+-...+
T Consensus 389 -~~~~~~~t~P---------------EIlrtdLs---~~vL~l~~----~G~~~d~~~f----------~fld~P~~~~i 435 (845)
T COG1643 389 -FLAFPEFTLP---------------EILRTDLS---GLVLQLKS----LGIGQDIAPF----------PFLDPPPEAAI 435 (845)
T ss_pred -HHhcccCCCh---------------hhhhcchH---HHHHHHHh----cCCCCCcccC----------ccCCCCChHHH
Confidence 3355444444 22211111 11111100 0000122221 12222233567
Q ss_pred HHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCc
Q 000324 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSE 1037 (1665)
Q Consensus 973 ~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~ 1037 (1665)
..|+..|...|++..+. .+|++|+.||.++++|+-+++...+-...|. .+++.|.|+-+
T Consensus 436 ~~A~~~L~~LGAld~~g-----~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~Ls 494 (845)
T COG1643 436 QAALTLLQELGALDDSG-----KLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASMLS 494 (845)
T ss_pred HHHHHHHHHcCCcCCCC-----CCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhhc
Confidence 88999999999998653 5999999999999999999999987775553 45555555433
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=317.62 Aligned_cols=283 Identities=20% Similarity=0.259 Sum_probs=226.0
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCC-CeEEEEEcccHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG-VMRAVYIAPLEALA 1403 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~-~~r~l~I~PtreLa 1403 (1665)
.|+.+++.++-. ||..|||||.++||..+-|+| ++.||.||||||.+|.+|+|.++...+.+. .-|+||++|||||+
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 355678888876 999999999999999999888 999999999999999999999998743221 23899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|++...+ .++....+.|++..||.+...+ +...+||||+||++|.+++++.. ...+.++..+|+||||+|++.+
T Consensus 266 iQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ldsiEVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 266 IQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLDSIEVLVLDEADRMLEEG 343 (691)
T ss_pred HHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-CccccceeEEEechHHHHHHHH
Confidence 99999998 7888888999999999887633 45678999999999999998743 4578999999999999998777
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|...|+.|...++.+.|.++||||+.. .++++..--..+..+|.-++...+..+ .+.+..+
T Consensus 344 ------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~L------------tQEFiRI 405 (691)
T KOG0338|consen 344 ------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKL------------TQEFIRI 405 (691)
T ss_pred ------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhh------------hHHHhee
Confidence 999999999999999999999999987 456666544444444443333322222 1222111
Q ss_pred C------hh-HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1560 T------KP-TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1560 ~------k~-~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
. ++ .+..++.. .-...+||||.|+++|..+-..| -.+
T Consensus 406 R~~re~dRea~l~~l~~r-tf~~~~ivFv~tKk~AHRl~Ill-----------------------------------GLl 449 (691)
T KOG0338|consen 406 RPKREGDREAMLASLITR-TFQDRTIVFVRTKKQAHRLRILL-----------------------------------GLL 449 (691)
T ss_pred ccccccccHHHHHHHHHH-hcccceEEEEehHHHHHHHHHHH-----------------------------------HHh
Confidence 1 22 22333333 23567999999999999887555 557
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+..++-+||.|++.+|...++.|++++|.||||
T Consensus 450 gl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 450 GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred hchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 888999999999999999999999999999998
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=335.09 Aligned_cols=286 Identities=18% Similarity=0.278 Sum_probs=216.3
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC----CCCeEEEEEcccH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLE 1400 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~----~~~~r~l~I~Ptr 1400 (1665)
.|.+.+++.+.. ||..|||+|.+|++.++++++ ++++||||||||+||++|++..+..... ...+++|||+||+
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~d-vlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptr 85 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRD-LMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcH
Confidence 355677777776 899999999999999999766 9999999999999999999999876321 1234899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+||.|+++.+. .+....++++..++|+.+.+.+ +...++|+|+||++|..+... ....+.++++|||||||+++
T Consensus 86 eLa~Qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll 162 (456)
T PRK10590 86 ELAAQIGENVR-DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRML 162 (456)
T ss_pred HHHHHHHHHHH-HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHh
Confidence 99999999998 5666778999999999876632 345679999999999888765 44568899999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
+.+ +...++.+...++...|++++|||+++ ..+++.++...+..+...........+..++...+...
T Consensus 163 ~~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----- 231 (456)
T PRK10590 163 DMG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR----- 231 (456)
T ss_pred ccc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-----
Confidence 765 555666677777888999999999988 46777777654433322222222222222222111110
Q ss_pred HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1557 ~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
.......+... ....++||||+|+..|..++..|. ..+..+
T Consensus 232 ---k~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~-----------------------------------~~g~~~ 272 (456)
T PRK10590 232 ---KRELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLN-----------------------------------KDGIRS 272 (456)
T ss_pred ---HHHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHH-----------------------------------HCCCCE
Confidence 01112222222 345689999999999999997772 235568
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+||+|++.+|..+++.|++|+++||||
T Consensus 273 ~~lhg~~~~~~R~~~l~~F~~g~~~iLVa 301 (456)
T PRK10590 273 AAIHGNKSQGARTRALADFKSGDIRVLVA 301 (456)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999999999999999998
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=349.32 Aligned_cols=304 Identities=17% Similarity=0.225 Sum_probs=223.0
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|.+.+.+.+.. ||..|+|+|.+|++.+++|++ ++++||||||||+||.+|+++.+... +. +++|||+||+||+.|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~n-vvv~apTGSGKTla~~LPiL~~l~~~-~~--~~aL~l~PtraLa~q 96 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRH-VVVATGTASGKSLAYQLPVLSALADD-PR--ATALYLAPTKALAAD 96 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCC-EEEECCCCCcHHHHHHHHHHHHHhhC-CC--cEEEEEcChHHHHHH
Confidence 44566666665 899999999999999998665 99999999999999999999999763 33 399999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccchh--ccCCCcEEEEChhhHHHH-HH-hhhccccCCCccEEEeecccccCCCCc
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK--LLEKGQIIISTPEKWDAL-SR-RWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~~~--~l~~~~IIV~TPe~l~~l-~r-~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
++..++ .++ ..++++..++|+++.+.+ +.++++|||+||+++... +. ..+.+..++++++|||||||.+.+.+|
T Consensus 97 ~~~~l~-~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg 174 (742)
T TIGR03817 97 QLRAVR-ELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFG 174 (742)
T ss_pred HHHHHH-Hhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccH
Confidence 999999 565 457899999999876533 345689999999998642 21 111224588999999999999987788
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccce-EEEEeecccchhhH----HH
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL-EIHIQGVDITNFEA----RM 1556 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l-~i~i~~~~~~~~~~----~~ 1556 (1665)
..+..++.+++.+....+.++|++++|||++|..++++++...+. ..+.....|... .+.+.......... ..
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPV--VAVTEDGSPRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCe--EEECCCCCCcCceEEEEecCCcccccccccccc
Confidence 999999999999998888899999999999999888887754432 223332222221 11110000000000 00
Q ss_pred -HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhccc
Q 000324 1557 -QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (1665)
Q Consensus 1557 -~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (1665)
..........+...+..+.++||||+||+.|+.++..|...... ....++.+
T Consensus 253 r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~---------------------------~~~~l~~~ 305 (742)
T TIGR03817 253 RRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGE---------------------------VDPDLAER 305 (742)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHh---------------------------hccccccc
Confidence 00001122233333345689999999999999999887432210 00123567
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1636 VGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1636 I~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|..|||+|++++|+.++++|++|++++|||
T Consensus 306 v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 306 VAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred hhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 899999999999999999999999999998
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=311.53 Aligned_cols=477 Identities=17% Similarity=0.178 Sum_probs=329.6
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCc
Q 000324 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (1665)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi 579 (1665)
-.+.+ .++..+..+||.|.||||||+.....+...-.. ..+.+|-+..|+|-.|..++.++.+- +|+
T Consensus 270 kdell-~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---------k~gk~IgcTQPRRVAAmSVAaRVA~E---Mgv 336 (902)
T KOG0923|consen 270 KDELL-KAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT---------KGGKKIGCTQPRRVAAMSVAARVAEE---MGV 336 (902)
T ss_pred HHHHH-HHHHhCcEEEEEcCCCCCccccccHHHHhcccc---------cCCceEeecCcchHHHHHHHHHHHHH---hCc
Confidence 33444 456778889999999999999766655443222 23556999999999999999998874 445
Q ss_pred EEEEEEC-CCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhcc
Q 000324 580 KVRELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (1665)
Q Consensus 580 ~V~~ltG-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (1665)
+.+--+| ...+.+.....+-|-++|.+ +|+|.....+.+..+++|||||||. |.-..+.++.-+.. +....
T Consensus 337 kLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHE----RTL~TDILfgLvKD-Iar~R 408 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHE----RTLHTDILFGLVKD-IARFR 408 (902)
T ss_pred ccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhh----hhhhhhHHHHHHHH-HHhhC
Confidence 5443333 22233333457889999999 7888887778899999999999994 33333333332222 22346
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEE
Q 000324 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738 (1665)
Q Consensus 659 ~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLV 738 (1665)
+..+++..|||+ +++.+..|+...| +|.+.+ |..|+..+|-..++.. .+.+....+.+ |+...+.+.+||
T Consensus 409 pdLKllIsSAT~-DAekFS~fFDdap---IF~iPG--RRyPVdi~Yt~~PEAd---YldAai~tVlq-IH~tqp~GDILV 478 (902)
T KOG0923|consen 409 PDLKLLISSATM-DAEKFSAFFDDAP---IFRIPG--RRYPVDIFYTKAPEAD---YLDAAIVTVLQ-IHLTQPLGDILV 478 (902)
T ss_pred CcceEEeecccc-CHHHHHHhccCCc---EEeccC--cccceeeecccCCchh---HHHHHHhhhee-eEeccCCccEEE
Confidence 899999999998 7899999998765 666655 4455555544333322 22221111111 222233689999
Q ss_pred EecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhC
Q 000324 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (1665)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~ 818 (1665)
|.....+.+.+...|.+.....+.- .+++ -|..+||.|+.+.+..|++.-..
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGsk-------------------------i~el---iv~PiYaNLPselQakIFePtP~ 530 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSK-------------------------IREL---IVLPIYANLPSELQAKIFEPTPP 530 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccc-------------------------cceE---EEeeccccCChHHHHhhcCCCCC
Confidence 9999999988888887764322110 1111 25667999999999999999999
Q ss_pred CCCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 819 GHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
|..+|++||++++.++.++++.+||+- ...|+|.+| ..+++|.++..||+|||||.| +|.|+.+++...
T Consensus 531 gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~a 607 (902)
T KOG0923|consen 531 GARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWA 607 (902)
T ss_pred CceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhh
Confidence 999999999999999999999999984 356888887 347899999999999999997 899999999654
Q ss_pred HHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHH
Q 000324 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRAD 970 (1665)
Q Consensus 891 ~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~ 970 (1665)
....+. ..++..-...+|......--++|. .|.++| -| . +.| ..+
T Consensus 608 Y~~eLE----~~t~PEIqRtnL~nvVL~LkSLGI----~Dl~~F---dF-----------m--------DpP-----p~e 652 (902)
T KOG0923|consen 608 YEHELE----EMTVPEIQRTNLGNVVLLLKSLGI----HDLIHF---DF-----------L--------DPP-----PTE 652 (902)
T ss_pred hhhhhc----cCCCcceeeccchhHHHHHHhcCc----chhccc---cc-----------C--------CCC-----ChH
Confidence 332221 122222223344444444444442 222221 11 1 111 124
Q ss_pred HHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHH
Q 000324 971 LVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050 (1665)
Q Consensus 971 li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~ 1050 (1665)
.+..|+..|-..|.+.-. | .+|.+||.||.|+++|...+++..+-+..|+ .+|+.|.|+.+.+..++.|+.++.
T Consensus 653 tL~~aLE~LyaLGALn~~---G--eLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~ 726 (902)
T KOG0923|consen 653 TLLKALEQLYALGALNHL---G--ELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQ 726 (902)
T ss_pred HHHHHHHHHHHhhccccc---c--chhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhh
Confidence 567789999999998644 3 8999999999999999999999988888876 899999999999999999998876
Q ss_pred HHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCC
Q 000324 1051 ELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLK 1086 (1665)
Q Consensus 1051 ~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~ 1086 (1665)
.-..-+.+ + +..+..--.+||+.|-+...
T Consensus 727 v~ad~a~~---~----f~~~~gDhi~~L~vyn~w~e 755 (902)
T KOG0923|consen 727 VHADNARK---N----FEEPVGDHIVLLNVYNQWKE 755 (902)
T ss_pred hhhhhhhh---c----cCCCCcchhhhhHHHHHHhh
Confidence 44332211 1 22334445667777776543
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=333.63 Aligned_cols=282 Identities=19% Similarity=0.282 Sum_probs=213.5
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|.+.+++.+.. ||..|||+|.+|++.++++++ ++++||||||||++|.+|++.++..... .+++||++||+||+.|
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~d-vi~~a~TGsGKT~a~~lpil~~l~~~~~--~~~~lil~PtreLa~Q 87 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGKD-VIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQALVLCPTRELADQ 87 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEECCCCCcHHHHHHHHHHHHhhhccC--CceEEEEeCCHHHHHH
Confidence 55667777776 899999999999999999766 9999999999999999999999876322 3489999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1406 ~~~~~~~~~~~~-~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
+.+.++ .++.. .++++..++|+.+.+.+ +...++|+|+||++|..++++ ....+.++++||+||||++++.+
T Consensus 88 ~~~~~~-~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g- 163 (460)
T PRK11776 88 VAKEIR-RLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMG- 163 (460)
T ss_pred HHHHHH-HHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcC-
Confidence 999998 45443 47899999999876532 335679999999999998876 44568899999999999998765
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
+...+..+...++...|++++|||+++. ..++..+...+.. +.+.+......+........... .
T Consensus 164 -----~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-i~~~~~~~~~~i~~~~~~~~~~~---k----- 229 (460)
T PRK11776 164 -----FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVE-VKVESTHDLPAIEQRFYEVSPDE---R----- 229 (460)
T ss_pred -----cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEE-EEECcCCCCCCeeEEEEEeCcHH---H-----
Confidence 5556666777778899999999999874 4555554333322 22222222222333222221111 1
Q ss_pred hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEc
Q 000324 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (1665)
Q Consensus 1561 k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H 1640 (1665)
......++.. ....++||||+|++.|+.++..|. ..+..+..+|
T Consensus 230 ~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~-----------------------------------~~~~~v~~~h 273 (460)
T PRK11776 230 LPALQRLLLH-HQPESCVVFCNTKKECQEVADALN-----------------------------------AQGFSALALH 273 (460)
T ss_pred HHHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHH-----------------------------------hCCCcEEEEe
Confidence 1122223333 345679999999999999998883 2356789999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1641 EGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1641 ~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|+|++.+|..+++.|++|.++||||
T Consensus 274 g~~~~~eR~~~l~~F~~g~~~vLVa 298 (460)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVA 298 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999999999999999998
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=333.66 Aligned_cols=284 Identities=21% Similarity=0.323 Sum_probs=216.5
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~ 1404 (1665)
|...+++.+.. ||..|+|||.+++|.++.|+| +++.|+||||||++|.+|+++.+... ..... .+||++||||||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~-~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVERKYV-SALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccccCCC-ceEEECCCHHHHH
Confidence 66778888887 899999999999999999877 99999999999999999999998742 22221 2999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEeCCCccchh--ccC-CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMDLK--LLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~-~i~v~~l~G~~~~~~~--~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
|+++.+. .++... ++++..++|+.+...+ .++ ++|||||||+|+.+++.+ ....+.++.++|+||||.|++++
T Consensus 114 Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhcCC
Confidence 9999999 788777 7999999999877633 333 589999999999999987 46789999999999999999987
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCC-CC--CccceEEEEeecccchhhHHH
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPP-GV--RPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~-~~--rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
|...+..|.+.++.+.|+++||||+++. ..++.-+-..+. .....+ .. .+..+...+... .....
T Consensus 191 ------f~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v--~~~~~-- 259 (513)
T COG0513 191 ------FIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEV--ESEEE-- 259 (513)
T ss_pred ------CHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEe--CCHHH--
Confidence 8889999999999999999999999983 133322222221 222221 11 111111111111 11000
Q ss_pred HhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccE
Q 000324 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (1665)
Q Consensus 1557 ~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI 1636 (1665)
....+..++.. ....++||||+|++.|..++..| ...++.+
T Consensus 260 ---k~~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l-----------------------------------~~~g~~~ 300 (513)
T COG0513 260 ---KLELLLKLLKD-EDEGRVIVFVRTKRLVEELAESL-----------------------------------RKRGFKV 300 (513)
T ss_pred ---HHHHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHH-----------------------------------HHCCCeE
Confidence 01112222222 23346999999999999999777 3456779
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1637 GYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1637 ~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+||+|++.+|..+++.|++|.++||||
T Consensus 301 ~~lhG~l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 301 AALHGDLPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999999999999998
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=353.17 Aligned_cols=300 Identities=22% Similarity=0.351 Sum_probs=221.6
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC----CCCeEEEEEcccHHHHHH
Q 000324 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1331 ~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~----~~~~r~l~I~PtreLa~Q 1405 (1665)
.+...+. +|..|||+|++|++.++.++ |++++||||||||++|++|++.++..... ..++++|||+|++||+.|
T Consensus 21 ~v~~~~~~~~~~~tpiQ~~Ai~~il~g~-nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~d 99 (876)
T PRK13767 21 YVREWFKEKFGTFTPPQRYAIPLIHEGK-NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNND 99 (876)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHcCC-CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHH
Confidence 3444444 79999999999999998865 59999999999999999999998875321 224589999999999999
Q ss_pred HHHHHHHHh----------cCCC-CcEEEEEeCCCccchh--cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEee
Q 000324 1406 RYRDWEIKF----------GQGL-GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIID 1471 (1665)
Q Consensus 1406 ~~~~~~~~~----------~~~~-~i~v~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViD 1471 (1665)
+++++...+ +... ++++..++|+++.+.+ .+ ..++|+|+|||+|..++.....+..+.++++||+|
T Consensus 100 i~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVID 179 (876)
T PRK13767 100 IHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVD 179 (876)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEe
Confidence 998765322 2222 7889999999887643 33 46799999999999888765444568899999999
Q ss_pred cccccCC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccC-----Cc-EEecCCCCCccceEEEE
Q 000324 1472 ELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-----HG-LFNFPPGVRPVPLEIHI 1544 (1665)
Q Consensus 1472 EaH~l~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~-----~~-~~~f~~~~rpv~l~i~i 1544 (1665)
|+|.+.+ .+|..++..+.++..+. +.+.|+|++|||++|..+++.|++... .. .+......++..+.+..
T Consensus 180 E~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~ 256 (876)
T PRK13767 180 EIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS 256 (876)
T ss_pred chhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec
Confidence 9999985 56999999999988774 457899999999999999999997642 11 11112222333333221
Q ss_pred eecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhh
Q 000324 1545 QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (1665)
Q Consensus 1545 ~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (1665)
....... .....+....+..+...+..++++||||||+++|+.++..|...+..
T Consensus 257 p~~~l~~--~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~------------------------ 310 (876)
T PRK13767 257 PVDDLIH--TPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE------------------------ 310 (876)
T ss_pred cCccccc--cccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh------------------------
Confidence 1110000 00011223344555555566789999999999999999888532210
Q ss_pred HHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1625 d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.....+|++|||+|++.+|..+++.|++|.++||||
T Consensus 311 -----~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVa 346 (876)
T PRK13767 311 -----EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVS 346 (876)
T ss_pred -----hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 023568999999999999999999999999999998
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=334.96 Aligned_cols=287 Identities=18% Similarity=0.227 Sum_probs=214.2
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Ptre 1401 (1665)
.+.+.+++.|.. ||..|+|+|.+++|.++.+++ ++++||||||||++|++|++.++...+ ...++++|||+||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRD-MIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 456677888876 899999999999999999876 999999999999999999998876532 223468999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
||.|+.+.++ .|+...++++..++|+.+... .+...++|+|+||++|..++.. ....+.++++||+||||++++
T Consensus 215 La~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhh
Confidence 9999999998 787777889999999876542 2445679999999999988876 345688999999999999987
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCc--cceEEEEeecccchhhHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRP--VPLEIHIQGVDITNFEAR 1555 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rp--v~l~i~i~~~~~~~~~~~ 1555 (1665)
++ +...++.+..++.+..|++++|||++.. ..++.++.......++....... ..+...+.... ...
T Consensus 292 ~g------f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~--~~~-- 361 (545)
T PTZ00110 292 MG------FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE--EHE-- 361 (545)
T ss_pred cc------hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe--chh--
Confidence 66 5556667777778899999999999873 46666654322222222111100 01111111111 000
Q ss_pred HHhcChhHHHHHHHHhc-CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1556 MQAMTKPTFTAIVQHAK-NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1556 ~~~~~k~~~~~i~~~l~-~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
....+..++..+. ...++||||+|++.|+.++..|. ..++
T Consensus 362 ----k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~-----------------------------------~~g~ 402 (545)
T PTZ00110 362 ----KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELR-----------------------------------LDGW 402 (545)
T ss_pred ----HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHH-----------------------------------HcCC
Confidence 0111222333322 56789999999999999998772 2345
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+..+||+|++.+|..+++.|++|+++||||
T Consensus 403 ~~~~ihg~~~~~eR~~il~~F~~G~~~ILVa 433 (545)
T PTZ00110 403 PALCIHGDKKQEERTWVLNEFKTGKSPIMIA 433 (545)
T ss_pred cEEEEECCCcHHHHHHHHHHHhcCCCcEEEE
Confidence 6789999999999999999999999999998
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=346.16 Aligned_cols=352 Identities=21% Similarity=0.280 Sum_probs=265.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|+..|+++|.+|+..+.++ +|+||++|||||||.+|++||+..+.+.. ..++|||.||+|||+.|.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhhhHhhHHHHH
Confidence 57778999999999988776 77999999999999999999999998763 238999999999999999999
Q ss_pred HHhhccCC--cEEEEEECCCcccHhh---hccccEEEeChhhHHH-HHhhcCC-CccccceeEEEEecccccccCCchHH
Q 000324 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKSGD-RTYTQLVKLLIIDEIHLLHDNRGPVL 643 (1665)
Q Consensus 571 ~~~~~~~g--i~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~-l~r~~~~-~~~l~~v~liIiDEaH~l~d~rg~~l 643 (1665)
++....++ +.+..++||+..+... .+.++|++|||.+|+. ++|.... ...+.++++||+||+|..-.-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988776 8999999999988773 5789999999999976 5555432 34567799999999999987899999
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHH---HHHH
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF---QLMN 720 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~~~ 720 (1665)
..++.|+++.+...+.+.++|+.|||+.|..+.+.-+....-. ..++.+..|-.....+...+........ ....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~--~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE--VPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce--eeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 9999999999998889999999999999977666554332111 1134444444443333332211100000 1111
Q ss_pred HHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEe
Q 000324 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (1665)
Q Consensus 721 ~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~ 800 (1665)
..-.-.-.....+-++|+|+.+|+.++.++...+....... . -+..-+..|
T Consensus 294 ~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~----------------------------~l~~~v~~~ 344 (851)
T COG1205 294 ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G----------------------------KLLDAVSTY 344 (851)
T ss_pred HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h----------------------------hhhhheeec
Confidence 11000111122367999999999999998765554432211 0 011347889
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCce
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||+|...+|.+++..|+.|++.++++|++++-|||+-++..||. +.-|. -|..+++||+|||||.+ ..+
T Consensus 345 ~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~----~g~P~-----~s~~~~~Q~~GRaGR~~--~~~ 413 (851)
T COG1205 345 RAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIA----YGYPG-----VSVLSFRQRAGRAGRRG--QES 413 (851)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhh----cCCCC-----chHHHHHHhhhhccCCC--CCc
Confidence 99999999999999999999999999999999999999999998 44332 16889999999999987 566
Q ss_pred EEEEEeCCCcHHHH
Q 000324 881 EGIIITGHSELRYY 894 (1665)
Q Consensus 881 ~~iil~~~~~~~~y 894 (1665)
..+++...+-.+.|
T Consensus 414 l~~~v~~~~~~d~y 427 (851)
T COG1205 414 LVLVVLRSDPLDSY 427 (851)
T ss_pred eEEEEeCCCccchh
Confidence 66766665544433
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=325.38 Aligned_cols=284 Identities=19% Similarity=0.273 Sum_probs=207.1
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC-----CCCeEEEEEccc
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPL 1399 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~-----~~~~r~l~I~Pt 1399 (1665)
.|++.+++.+.. ||..|+|+|++|+|.++.|++ ++++||||||||+||++|++..+...+. ..++++|||+||
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRD-VAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCc-EEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 466778888877 899999999999999999776 9999999999999999999998875322 123589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l 1476 (1665)
+|||.|+++.+. .+....++++..++|+...+.. +..+++|+|+||+++..+++. ....+.+++++|+||||++
T Consensus 93 reLa~Qi~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAE-PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 999999999988 6776778999999998765422 334579999999999988865 4556889999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCC--CCeEEEEcccCCCh-HHHH-HHhcccCCcEEecCCCCCc-cceEEEEeecccch
Q 000324 1477 GGQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVRP-VPLEIHIQGVDITN 1551 (1665)
Q Consensus 1477 ~~~~g~~~e~~~srl~~i~~~~~~--~~riI~lSATl~n~-~dl~-~wl~~~~~~~~~f~~~~rp-v~l~i~i~~~~~~~ 1551 (1665)
.+.+ +...+..+...++. ..+.+++|||++.. ..++ .++.. .....+.+.... ..+.... +. ..
T Consensus 170 ~~~~------f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~--p~~i~v~~~~~~~~~i~~~~--~~-~~ 238 (423)
T PRK04837 170 FDLG------FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNN--PEYVEVEPEQKTGHRIKEEL--FY-PS 238 (423)
T ss_pred hhcc------cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCC--CEEEEEcCCCcCCCceeEEE--Ee-CC
Confidence 8765 44555555555553 45679999999864 2333 23322 122222222211 1111111 10 01
Q ss_pred hhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHH
Q 000324 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (1665)
Q Consensus 1552 ~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (1665)
.... ...+..++.. ....++||||+++..|+.++..|. .
T Consensus 239 ~~~k-----~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~-----------------------------------~ 277 (423)
T PRK04837 239 NEEK-----MRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLA-----------------------------------A 277 (423)
T ss_pred HHHH-----HHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHH-----------------------------------h
Confidence 1111 1112222222 345679999999999999997772 2
Q ss_pred hcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1632 l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++.+.++||+|++.+|..+++.|++|+++||||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVa 311 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVA 311 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEE
Confidence 4567999999999999999999999999999998
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=318.10 Aligned_cols=301 Identities=21% Similarity=0.233 Sum_probs=202.2
Q ss_pred HHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc-
Q 000324 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (1665)
Q Consensus 499 iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~- 576 (1665)
+|.++|+++++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.|++++|.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 49999999999875 68999999999999999998842 236899999999999999999998753
Q ss_pred ---CCcEEEEEECCCcccHh-----------------------hhccccEEEeChhhHHHHHhhcCC------Cccccce
Q 000324 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSGD------RTYTQLV 624 (1665)
Q Consensus 577 ---~gi~V~~ltGd~~~~~~-----------------------~~~~~~IiV~TPekld~l~r~~~~------~~~l~~v 624 (1665)
.++.+..++|+...+.+ ....++|++|||+.|+.++|.+.. ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36788888987332200 013578999999999998887522 1236889
Q ss_pred eEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcc--ccCceEEecC---------
Q 000324 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN--------- 693 (1665)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~--~~~~~~~f~~--------- 693 (1665)
++|||||+|.+.......+...+..+ ..+.......|+|+||||++. .+..++... ....+....+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYM-QLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHH-HHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 99999999998754433333222222 222222335799999999874 444444321 1111111111
Q ss_pred ---------CCccc--cceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccc
Q 000324 694 ---------SYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (1665)
Q Consensus 694 ---------~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (1665)
.+||+ ++.+.+.. ........+..+.+.+.+.+ ....++++||||+|++.+..++..|.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~---- 297 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGL---- 297 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCC----
Confidence 24443 34443332 21111111222222211111 112467999999999999999999986421
Q ss_pred cccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEE
Q 000324 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (1665)
Q Consensus 763 l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV 842 (1665)
...+..+||.+++.+|..+ +..+|||||+++++|||+|.+. |
T Consensus 298 -------------------------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~-v 339 (357)
T TIGR03158 298 -------------------------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDW-L 339 (357)
T ss_pred -------------------------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCce-E
Confidence 1235678999999998754 4789999999999999999874 4
Q ss_pred EecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 843 I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
|. +|. +..+|+||+||+|
T Consensus 340 i~-----~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 IF-----SAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred EE-----CCC-------CHHHHhhhcccCC
Confidence 42 332 6789999999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=332.73 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=208.6
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-----CCCCeEEEEEccc
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPL 1399 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-----~~~~~r~l~I~Pt 1399 (1665)
.|.+.+++.+.. ||..|||+|.+|++.++.+++ ++++||||||||++|++|++.++.... ...++++|||+||
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~d-viv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PT 205 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRS-LLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC-EEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCC
Confidence 466778888876 899999999999999998665 999999999999999999998876421 1234699999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l 1476 (1665)
+|||.|+.+.++ .+....++++..+.|+..... ++..+++|||+||++|..++.+ ....+.++++||+||||++
T Consensus 206 reLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lViDEad~m 282 (518)
T PLN00206 206 RELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLVLDEVDCM 282 (518)
T ss_pred HHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEEeecHHHH
Confidence 999999999888 777777888888888765542 2345679999999999888876 3567899999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccc-eEEEEeecccchhhH
Q 000324 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEA 1554 (1665)
Q Consensus 1477 ~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~-l~i~i~~~~~~~~~~ 1554 (1665)
++.+ +...+..+...+ ++.|++++|||+++. ..++.++.... ..+.+....++.. +...........
T Consensus 283 l~~g------f~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~-~~i~~~~~~~~~~~v~q~~~~~~~~~--- 351 (518)
T PLN00206 283 LERG------FRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDI-ILISIGNPNRPNKAVKQLAIWVETKQ--- 351 (518)
T ss_pred hhcc------hHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCC-EEEEeCCCCCCCcceeEEEEeccchh---
Confidence 8765 333344444444 467999999999874 46777765432 2333333222221 111111111000
Q ss_pred HHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1555 ~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
. ....+..+........++||||+|+..|+.++..|. ...+.
T Consensus 352 k----~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~----------------------------------~~~g~ 393 (518)
T PLN00206 352 K----KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAIT----------------------------------VVTGL 393 (518)
T ss_pred H----HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHh----------------------------------hccCc
Confidence 0 011122222221224579999999999999987662 12345
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+..+||+|++.+|..+++.|++|+++||||
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVa 424 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVA 424 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 6889999999999999999999999999998
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-31 Score=334.41 Aligned_cols=285 Identities=22% Similarity=0.333 Sum_probs=208.7
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-----CCCCeEEEEEcccH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-----~~~~~r~l~I~Ptr 1400 (1665)
|.+.+++.|.. ||..|||+|.++||.++.++| ++++||||||||++|++|+++++.... ....+++|||+||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 56677777776 899999999999999999776 999999999999999999999886521 11135999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
||+.|+++.+. .|+...++++..++|+...+.+ +...++|||+||++|..+++++. ...+..+++|||||||+++
T Consensus 95 eLa~Qi~~~~~-~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAV-KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999998 7777788999999999876532 23456999999999998876532 2457889999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcCC--CCeEEEEcccCCCh-HHHH-HHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~--~~riI~lSATl~n~-~dl~-~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+.+ +...+..+...++. ..|+++||||+++. ..+. .++.. +..+..-........+...+. .....
T Consensus 173 d~g------f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~---~~~~~ 242 (572)
T PRK04537 173 DLG------FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNE-PEKLVVETETITAARVRQRIY---FPADE 242 (572)
T ss_pred hcc------hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcC-CcEEEeccccccccceeEEEE---ecCHH
Confidence 755 55566666666664 68999999999873 2333 33332 212221111111111111111 11100
Q ss_pred HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
.. ...+..++.. ....++||||+|+..|+.++..|. ..+
T Consensus 243 ~k-----~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~-----------------------------------~~g 281 (572)
T PRK04537 243 EK-----QTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLE-----------------------------------RHG 281 (572)
T ss_pred HH-----HHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHH-----------------------------------HcC
Confidence 00 1112222222 456789999999999999998773 235
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+.++||+|++.+|..+++.|++|+++||||
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVa 313 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVA 313 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 56999999999999999999999999999998
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-31 Score=332.96 Aligned_cols=326 Identities=17% Similarity=0.159 Sum_probs=215.1
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
++..+ .||+ |+|||.++++.++.+.++++++||||||||.++.++.+.. ... . ....++||++|||+||.
T Consensus 7 ff~~~-~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~-----~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 7 WYQGL-HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--A-----KVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHH-hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--c-----cccceEEEeCchHHHHH
Confidence 34443 4887 9999999999999887778999999999998665444422 111 0 11236777899999999
Q ss_pred HHHHHHHHhhccC-----------------------CcEEEEEECCCcccHhhh---ccccEEEeChhhHHHHHhhcCC-
Q 000324 565 EVVGNLSNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGD- 617 (1665)
Q Consensus 565 q~~~~~~~~~~~~-----------------------gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~- 617 (1665)
|+++.+.+..+.+ +++|..++|+.....+.. .+++|||+|++ .+.++...
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~ 153 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFS 153 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccc
Confidence 9999999877644 488999999988776543 46899999965 45443321
Q ss_pred ------------CccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccc
Q 000324 618 ------------RTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (1665)
Q Consensus 618 ------------~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~ 684 (1665)
...++++++||+|||| +...+...++.|+..+.+ .....+.|+++||||++. ..+....+..++
T Consensus 154 gYg~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 154 GYGCGFKSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred ccccccccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 1136889999999999 433566666666554210 011123799999999985 233333333222
Q ss_pred cCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccc
Q 000324 685 EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764 (1665)
Q Consensus 685 ~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~ 764 (1665)
. .+.+.......+-..+++.... ..+...+...+.... ...++++||||||++.|..+++.|...+
T Consensus 231 ~--~i~V~~~~l~a~ki~q~v~v~~---e~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------- 296 (844)
T TIGR02621 231 Y--KHPVLKKRLAAKKIVKLVPPSD---EKFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKEK------- 296 (844)
T ss_pred c--eeecccccccccceEEEEecCh---HHHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhcC-------
Confidence 1 1111111111111122322221 111211111111111 1236789999999999999999887532
Q ss_pred cccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHH-----HHHHHHhC----CC-------CCeEEecc
Q 000324 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTA 828 (1665)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~-----~v~~~F~~----g~-------i~VLVaT~ 828 (1665)
+..+||+|++.+|. .+++.|++ |. .+|||||+
T Consensus 297 --------------------------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd 344 (844)
T TIGR02621 297 --------------------------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS 344 (844)
T ss_pred --------------------------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc
Confidence 35679999999999 88999987 44 68999999
Q ss_pred ccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 829 tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
++++|||++. .+||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 345 VaerGLDId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 345 AGEVGVNISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hhhhcccCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999998 56665 332 46799999999999884333333444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=304.86 Aligned_cols=456 Identities=16% Similarity=0.182 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-c
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-M 576 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~ 576 (1665)
..+.+.+. .+..++.++|.+.||||||+.....++..-.. ++..|.+..|+|..|..++++++..++ .
T Consensus 359 ~~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~edGY~----------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 359 ACRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYEDGYA----------DNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhcccc----------cCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34555554 45677889999999999999766555443221 234788999999999999999987654 3
Q ss_pred CCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhh
Q 000324 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (1665)
Q Consensus 577 ~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~ 656 (1665)
+|-.|+.... +++-....+.|-++|.+ +|+|.......+.++++||+||||. |.-..+.++.- ++..-.
T Consensus 428 lG~~VGYsIR---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHE----RslNtDilfGl-lk~~la 496 (1042)
T KOG0924|consen 428 LGDTVGYSIR---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHE----RSLNTDILFGL-LKKVLA 496 (1042)
T ss_pred cccccceEEE---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhh----cccchHHHHHH-HHHHHH
Confidence 4544544332 22222246789999999 7888876667889999999999994 43334433332 233333
Q ss_pred ccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeE
Q 000324 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 657 ~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
...+.++|..|||+ |++.++.|++..| .|+.. .|..|+...|...+.. ....+...... .|......+.+
T Consensus 497 rRrdlKliVtSATm-~a~kf~nfFgn~p---~f~Ip--GRTyPV~~~~~k~p~e---DYVeaavkq~v-~Ihl~~~~Gdi 566 (1042)
T KOG0924|consen 497 RRRDLKLIVTSATM-DAQKFSNFFGNCP---QFTIP--GRTYPVEIMYTKTPVE---DYVEAAVKQAV-QIHLSGPPGDI 566 (1042)
T ss_pred hhccceEEEeeccc-cHHHHHHHhCCCc---eeeec--CCccceEEEeccCchH---HHHHHHHhhhe-EeeccCCCCCE
Confidence 46799999999998 8899999999655 44444 4555655544432221 11111111110 11222335789
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
|||.+.+..++.++..+.......... ..-...|..+++.|+..-+..+++..
T Consensus 567 lIfmtGqediE~t~~~i~~~l~ql~~~---------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a 619 (1042)
T KOG0924|consen 567 LIFMTGQEDIECTCDIIKEKLEQLDSA---------------------------PTTDLAVLPIYSQLPADLQAKIFQKA 619 (1042)
T ss_pred EEecCCCcchhHHHHHHHHHHHhhhcC---------------------------CCCceEEEeehhhCchhhhhhhcccC
Confidence 999999999999998887765332211 00123477789999999999999999
Q ss_pred hCCCCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
..|..+++|||++++.++.+|++.+||+- -.+|++..| ...++|.+...||.|||||.| .|.||.+++.
T Consensus 620 ~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe 696 (1042)
T KOG0924|consen 620 EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTE 696 (1042)
T ss_pred CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhh
Confidence 99999999999999999999999999983 467999887 458899999999999999986 8999999986
Q ss_pred CcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHH
Q 000324 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (1665)
Q Consensus 889 ~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (1665)
.. |...++....| .-...+|...+.---++ .++|+.+| -| .+ .+.
T Consensus 697 ~a--y~~eml~stvP--EIqRTNl~nvVLlLksl----gV~dll~F---dF-------------------mD-----~Pp 741 (1042)
T KOG0924|consen 697 DA--YKNEMLPSTVP--EIQRTNLSNVVLLLKSL----GVDDLLKF---DF-------------------MD-----PPP 741 (1042)
T ss_pred hH--HHhhcccCCCc--hhhhcchhhHHHHHHhc----ChhhhhCC---Cc-------------------CC-----CCH
Confidence 33 33345555444 11112222222222222 23443332 11 11 112
Q ss_pred HHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhH
Q 000324 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (1665)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E 1048 (1665)
.+.+.+++..|.-.|+|... | .+|++|+-|+.|+++|...++++-+..-.|. .+||.|+|+-+- ..++.|+.|
T Consensus 742 ed~~~~sly~Lw~LGAl~~~---g--~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpke 814 (1042)
T KOG0924|consen 742 EDNLLNSLYQLWTLGALDNT---G--QLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPKE 814 (1042)
T ss_pred HHHHHHHHHHHHHhhccccC---C--ccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeecccc
Confidence 36788999999999999754 3 8999999999999999999999987777765 788888887543 678889888
Q ss_pred HHHHHHHhc
Q 000324 1049 KMELAKLLD 1057 (1665)
Q Consensus 1049 ~~~l~~l~~ 1057 (1665)
+.+-..++.
T Consensus 815 r~eead~ar 823 (1042)
T KOG0924|consen 815 REEEADAAR 823 (1042)
T ss_pred chhhhhhHH
Confidence 887766553
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=299.06 Aligned_cols=334 Identities=21% Similarity=0.366 Sum_probs=253.4
Q ss_pred hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 484 EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 484 ~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
+.++..| .||++|+.||+.|+..++.+.+ +++.|++|+|||.+|.+++++.+... .....+++++|+++|
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qalilaPtreL 106 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--------VKETQALILAPTREL 106 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--------hHHHHHHHhcchHHH
Confidence 3445555 6999999999999999988854 99999999999999999999987432 234578999999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEECCCcccHh--hh--ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEeccccccc
Q 000324 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 563 a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~--~~--~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
|.|+...........+++|..++|+.....+ .+ ..++|+|+||++. +.+.+.. .....++++|+||++.+..
T Consensus 107 a~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhc
Confidence 9999988888888889999999998876533 23 3579999999995 5555542 4566799999999999876
Q ss_pred -CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHH
Q 000324 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (1665)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (1665)
++...+..+... .++++|++++|||+|. ..++.+-+..+|.. +..-.....---+.+.|+.+.... +
T Consensus 184 ~gfkdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~-i~vkk~~ltl~gikq~~i~v~k~~---k 252 (397)
T KOG0327|consen 184 RGFKDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVR-ILVKKDELTLEGIKQFYINVEKEE---K 252 (397)
T ss_pred cchHHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceE-EEecchhhhhhheeeeeeeccccc---c
Confidence 666666666554 4788999999999985 33444433333211 111111111112233333333222 2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
+..+.. +|+ .-.+.+|||||++.+..+...|...+ +
T Consensus 253 ~~~l~d-l~~------~~~q~~if~nt~r~v~~l~~~L~~~~-------------------------------------~ 288 (397)
T KOG0327|consen 253 LDTLCD-LYR------RVTQAVIFCNTRRKVDNLTDKLRAHG-------------------------------------F 288 (397)
T ss_pred ccHHHH-HHH------hhhcceEEecchhhHHHHHHHHhhCC-------------------------------------c
Confidence 222221 122 35689999999999999998885543 2
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.+...|+.|.+.+|..+.+.|+.|..+|||.|+.+|+|+|+-.+..||+ |+.|. ...+|+||+||+||.|
T Consensus 289 ~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 289 TVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG 358 (397)
T ss_pred eEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC
Confidence 3566799999999999999999999999999999999999999999999 88886 6889999999999977
Q ss_pred CCCceEEEEEeCCCcHHHHHH
Q 000324 876 YDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~~~~y~~ 896 (1665)
.+|.++.+++..+...+.+
T Consensus 359 --rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 359 --RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred --CCceeeeeehHhhHHHHHh
Confidence 8999999999877666554
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=321.26 Aligned_cols=285 Identities=19% Similarity=0.272 Sum_probs=210.4
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc--CCCCeEEEEEcccHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~--~~~~~r~l~I~PtreLa 1403 (1665)
|...+++.+.. ||..|+++|.+|++.++++++ ++++||||+|||+||++|+++++...+ ..+.+++||++||++|+
T Consensus 8 l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa 86 (434)
T PRK11192 8 LDESLLEALQDKGYTRPTAIQAEAIPPALDGRD-VLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELA 86 (434)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHH
Confidence 34455666655 899999999999999998766 999999999999999999999987532 12235999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|+++.+. .+....++++..++|+...... +..+++|+|+||+++..++.. ....+.++++||+||||++++++
T Consensus 87 ~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 87 MQVADQAR-ELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred HHHHHHHH-HHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC
Confidence 99999998 6777788999999999876532 335679999999999888765 34457899999999999998765
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCcc-ceEEEEeecccchhhHHHH
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv-~l~i~i~~~~~~~~~~~~~ 1557 (1665)
+...+..+...++...|+++||||++. ..+++.++...+.. +...+..+.. .+....... .....
T Consensus 164 ------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~i~~~~~~~--~~~~~--- 231 (434)
T PRK11192 164 ------FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVE-VEAEPSRRERKKIHQWYYRA--DDLEH--- 231 (434)
T ss_pred ------cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEE-EEecCCcccccCceEEEEEe--CCHHH---
Confidence 334444555566778899999999975 45788887654332 2222222211 111111111 00000
Q ss_pred hcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
....+..+... ....++||||+|+.+|+.++..|. ..+..+.
T Consensus 232 --k~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~-----------------------------------~~~~~~~ 273 (434)
T PRK11192 232 --KTALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLR-----------------------------------KAGINCC 273 (434)
T ss_pred --HHHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHH-----------------------------------hCCCCEE
Confidence 01112222222 245789999999999999998773 1345689
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++||+|++.+|..+++.|++|+++||||
T Consensus 274 ~l~g~~~~~~R~~~l~~f~~G~~~vLVa 301 (434)
T PRK11192 274 YLEGEMVQAKRNEAIKRLTDGRVNVLVA 301 (434)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 9999999999999999999999999998
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=327.23 Aligned_cols=284 Identities=21% Similarity=0.275 Sum_probs=210.2
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
.|++.+++++.. ||.+|+|+|.++++.++.+++ ++++||||||||+||.+|++..+..... .+++|||+||++||.
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~d-vl~~ApTGsGKT~af~lpll~~l~~~~~--~~~~LIL~PTreLa~ 88 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRD-VLGMAQTGSGKTAAFSLPLLHNLDPELK--APQILVLAPTRELAV 88 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcCCCCcHHHHHHHHHHHHhhhccC--CCeEEEEeCcHHHHH
Confidence 366677888876 899999999999999998766 9999999999999999999998866322 349999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
|+++.+........++.+..++|+.+.+.+ +...++|||+||+++..++.+ ....+.++++||+||||.++..+
T Consensus 89 Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~g- 165 (629)
T PRK11634 89 QVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMG- 165 (629)
T ss_pred HHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcc-
Confidence 999999843333357899999998776532 334679999999999888765 44568899999999999998766
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCcc-ceEEEEeecccchhhHHHHhc
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv-~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
+...+..+...++...|+++||||+++. ..++..+...+..+ ......... .+....... ... .
T Consensus 166 -----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i-~i~~~~~~~~~i~q~~~~v--~~~-~----- 231 (629)
T PRK11634 166 -----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV-RIQSSVTTRPDISQSYWTV--WGM-R----- 231 (629)
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEE-EccCccccCCceEEEEEEe--chh-h-----
Confidence 5566666777788899999999999874 34554443322222 111111111 111111100 000 0
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
....+..++.. ....++||||+|+..|..++..|. ..++.+..+
T Consensus 232 k~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~-----------------------------------~~g~~~~~l 275 (629)
T PRK11634 232 KNEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALE-----------------------------------RNGYNSAAL 275 (629)
T ss_pred HHHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHH-----------------------------------hCCCCEEEe
Confidence 01112222232 344679999999999999998772 245678999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||+|++.+|..+++.|++|+++||||
T Consensus 276 hgd~~q~~R~~il~~Fr~G~~~ILVA 301 (629)
T PRK11634 276 NGDMNQALREQTLERLKDGRLDILIA 301 (629)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999998
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=316.78 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=196.6
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH-
Q 000324 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (1665)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~- 592 (1665)
++|+||||||||.+|++++++.+... ...+++|++|+++|+.|+++++...++. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 79999999999999999999886543 2348999999999999999999997653 4555555432100
Q ss_pred --------------------hhhccccEEEeChhhHH-HHHhhcCC-Ccccc--ceeEEEEecccccccCCchHHHHHHH
Q 000324 593 --------------------QQIEETQIIVTTPEKWD-IITRKSGD-RTYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (1665)
Q Consensus 593 --------------------~~~~~~~IiV~TPekld-~l~r~~~~-~~~l~--~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1665)
.....++|+|+||+++. .+.+.... ...+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01124689999999963 33331111 01111 23789999999997642222333333
Q ss_pred HHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccc-cceEEEEeeecCchhHHHHHHHHHHHHHH
Q 000324 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQLMNDLCYEKV 727 (1665)
Q Consensus 649 r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 727 (1665)
.+ . ..+.|+++||||+| +.+..|+........ .......+. ....+.+.............+.. .+
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~ 216 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYVEF-NEPLDLKEERRFERHRFIKIESDKVGEISSLER----LL 216 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCccc-ccCCCCccccccccccceeeccccccCHHHHHH----HH
Confidence 32 2 34689999999998 456666643211100 000000000 01111111111111111111111 12
Q ss_pred HHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHH
Q 000324 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRG 807 (1665)
Q Consensus 728 ~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~ 807 (1665)
.....++++||||+|++.|+.++..|.+.+.. ..+..+||+|++.
T Consensus 217 ~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~~~~ 261 (358)
T TIGR01587 217 EFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRFTEK 261 (358)
T ss_pred HHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCCCHH
Confidence 22234689999999999999999999875421 2478889999999
Q ss_pred HHHHH----HHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC--CceE
Q 000324 808 DRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGE 881 (1665)
Q Consensus 808 dR~~v----~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~ 881 (1665)
+|..+ ++.|++|..+|||||+++++|||+| +.+||. |.. +..+|+||+||+||.|.. ..|.
T Consensus 262 ~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~~~~ 328 (358)
T TIGR01587 262 DRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGENFE 328 (358)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE----cCC--------CHHHHHHHhccccCCCCCCCCCCe
Confidence 99764 7889999999999999999999997 455565 332 567899999999998853 2357
Q ss_pred EEEEeCCCc
Q 000324 882 GIIITGHSE 890 (1665)
Q Consensus 882 ~iil~~~~~ 890 (1665)
.+++....+
T Consensus 329 ~~v~~~~~~ 337 (358)
T TIGR01587 329 VYIITIAPE 337 (358)
T ss_pred EEEEeecCC
Confidence 888876654
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=321.32 Aligned_cols=285 Identities=21% Similarity=0.285 Sum_probs=209.3
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCC-----CCeEEEEEccc
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPL 1399 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~r~l~I~Pt 1399 (1665)
.|.+.+.+.|.. ||.+|+|+|.+|++.+++|++ ++++||||||||+||++|++..+.+.+.. +.+++|||+||
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~d-vi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Pt 171 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHD-AIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPT 171 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCc
Confidence 356677788877 899999999999999999766 99999999999999999999998764321 13599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch--hcc--CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
+||+.|+++.++ .+....++++..++|+.+.+. +.+ ..++|+|+||++|..+..+| ...+.++++|||||||+
T Consensus 172 reLa~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~ 248 (475)
T PRK01297 172 RELVVQIAKDAA-ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADR 248 (475)
T ss_pred HHHHHHHHHHHH-HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHH
Confidence 999999999998 666677899999999876542 222 35799999999998887764 45688999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCC--CCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCC-ccceEEEEeecccch
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVR-PVPLEIHIQGVDITN 1551 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~--~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~r-pv~l~i~i~~~~~~~ 1551 (1665)
+.+.+ +..+++.+..+++. ..|++++|||+++ ...++.++...+ ..+.+.+... ...+..++.......
T Consensus 249 l~~~~------~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMG------FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDP-AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcc------cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCC-EEEEeccCcCCCCcccEEEEEecchh
Confidence 98765 55666666666643 5799999999875 345555443322 2222222111 111222222111110
Q ss_pred hhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHH
Q 000324 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (1665)
Q Consensus 1552 ~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (1665)
. ......++.. ....++||||+++++|+.++..|. .
T Consensus 322 k--------~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~-----------------------------------~ 357 (475)
T PRK01297 322 K--------YKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLV-----------------------------------K 357 (475)
T ss_pred H--------HHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHH-----------------------------------H
Confidence 0 0111122222 344689999999999999997772 2
Q ss_pred hcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1632 l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+..+..+||+|++.+|..+++.|++|+++||||
T Consensus 358 ~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLva 391 (475)
T PRK01297 358 DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVA 391 (475)
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 3456889999999999999999999999999998
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=316.00 Aligned_cols=285 Identities=17% Similarity=0.265 Sum_probs=204.4
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
.+.+.++++++. ||..|+|+|.+|++.++++.+ ++++||||||||++|++|++..+...... .++|||+|+++|+.
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~~~--~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDLNA--CQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCCCC--ceEEEECCCHHHHH
Confidence 466778888888 899999999999999999776 89999999999999999999988653233 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
|+.+.+. .++...++.+..+.|+..... .....++|+|+||+++..++++ ....+.++++||+||||++.+.+
T Consensus 111 Q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~- 186 (401)
T PTZ00424 111 QIQKVVL-ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRG- 186 (401)
T ss_pred HHHHHHH-HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcc-
Confidence 9999888 566666788888888865432 2334569999999999887765 34568899999999999997644
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
+...+..+..+++...|++++|||+++. .++.......+..+...........+........... ..
T Consensus 187 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 254 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE-------WK 254 (401)
T ss_pred -----hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH-------HH
Confidence 2233344455667889999999999873 2333332222222211111111111111111111000 00
Q ss_pred hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEc
Q 000324 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (1665)
Q Consensus 1561 k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H 1640 (1665)
......+... ....++||||+|+++|+.++..|. ..+.++..+|
T Consensus 255 ~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~-----------------------------------~~~~~~~~~h 298 (401)
T PTZ00424 255 FDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMH-----------------------------------ERDFTVSCMH 298 (401)
T ss_pred HHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHH-----------------------------------HCCCcEEEEe
Confidence 1112222222 345679999999999999997762 2356799999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1641 EGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1641 ~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|+|++.+|..+++.|++|+++||||
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLva 323 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLIT 323 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999999998
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=299.43 Aligned_cols=337 Identities=19% Similarity=0.289 Sum_probs=260.2
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
++..+ .||+.++|||++.+|.++.+.+ ++..|-||||||.+|++|+++.+..+. ..+.+++++.|+++||.
T Consensus 33 ~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~ 104 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELAL 104 (529)
T ss_pred HHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHH
Confidence 34444 7899999999999999998866 999999999999999999999998764 23679999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHhhh---ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCc
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRG 640 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg 640 (1665)
|..+.++...+..++++..++|+.++.++.. .+++||++||+++..+.-... ..++.|.+||+||++.|.. ++.
T Consensus 105 qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfq 182 (529)
T KOG0337|consen 105 QTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQ 182 (529)
T ss_pred HHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhH
Confidence 9999999988888899999999888887643 479999999998754443333 4578899999999999987 577
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEE-ecCCCccc-cceEEEEeeecCchhHHHHH
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPV-PLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~-f~~~~rpv-~l~~~~~~~~~~~~~~~~~~ 718 (1665)
+.+..+++|+ +...|.++||||+|+ ++..|.+.....++.+ .+.+-+-. .++..+..+. + ..+..+
T Consensus 183 eql~e~l~rl-------~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~--~-a~K~aa 250 (529)
T KOG0337|consen 183 EQLHEILSRL-------PESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR--K-AEKEAA 250 (529)
T ss_pred HHHHHHHHhC-------CCcceEEEEeccCch--hhHHHHHccCCCCceEEeehhhhcchhhhhheeeec--c-HHHHHH
Confidence 8888888775 566799999999994 6777776654333222 11111111 1122222221 1 122222
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEE
Q 000324 719 MNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (1665)
+..+ +.......+++|||.|+..++.+...|...+.. +.
T Consensus 251 Ll~i----l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~-------------------------------------~s 289 (529)
T KOG0337|consen 251 LLSI----LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGE-------------------------------------GS 289 (529)
T ss_pred HHHH----HhccccccceeEEecccchHHHHHHHHHhcCCC-------------------------------------cc
Confidence 2211 222233568999999999999988888776533 34
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCC
Q 000324 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (1665)
..+|.|.+..|..-...|..++..+||.|+++++|+|+|-..-||+ ||.+. +..-|+||+||+.|.| .
T Consensus 290 ~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin----yd~p~------~~klFvhRVgr~arag--r 357 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN----YDFPP------DDKLFVHRVGRVARAG--R 357 (529)
T ss_pred ccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc----ccCCC------CCceEEEEecchhhcc--c
Confidence 4589999999999999999999999999999999999999999999 66543 3345999999999988 8
Q ss_pred ceEEEEEeCCCcHHHHHHh
Q 000324 879 YGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 879 ~G~~iil~~~~~~~~y~~l 897 (1665)
.|.+|-++.+.+..|...+
T Consensus 358 tg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred cceEEEEEecccchhhhhh
Confidence 8999999999998887664
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=291.19 Aligned_cols=341 Identities=22% Similarity=0.347 Sum_probs=237.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
++.-+++.+|...+..++.+ |.|++.|||-|||.+|++.|...+... ++ ++|+++|||-|+.|.++.+
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHH
Confidence 34557889999999988876 899999999999999999999888764 23 8999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHh--hhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCCchHHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv 647 (1665)
.+.++-..-.++.+||....+.+ .+...+|+|+||... ..+... +..+.++.|+||||||+-..+. .|-.+.
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGny--AYv~Va 153 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNY--AYVFVA 153 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcc--hHHHHH
Confidence 99876445578999999987754 467899999999975 233222 2467889999999999865332 233333
Q ss_pred HHHHHHHhhccCCeeEEEEcccCCC----hHHHHHHHhccccCceEEe---cCCCcccc--ceEEEEeeecC--------
Q 000324 648 ARTVRQIETTKEHIRLVGLSATLPN----YEDVALFLRVNLEKGLFYF---DNSYRPVP--LSQQYIGIQVK-------- 710 (1665)
Q Consensus 648 ~r~~~~~~~~~~~~riV~lSATl~n----~~dv~~~l~~~~~~~~~~f---~~~~rpv~--l~~~~~~~~~~-------- 710 (1665)
.... ....+++++|||||..+ ..+|.+-|+... +.+- +.+.+|.- ....++.++..
T Consensus 154 ~~y~----~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~---vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~ 226 (542)
T COG1111 154 KEYL----RSAKNPLILGLTASPGSDLEKIQEVVENLGIEK---VEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRD 226 (542)
T ss_pred HHHH----HhccCceEEEEecCCCCCHHHHHHHHHhCCcce---EEEecCCCccHHHhhccceeEEEeccCcHHHHHHHH
Confidence 3332 24678899999999765 233444444321 1111 11122110 11111100000
Q ss_pred ----------------------c---------------------hhHHHHHHH------------H--------HH----
Q 000324 711 ----------------------K---------------------PLQRFQLMN------------D--------LC---- 723 (1665)
Q Consensus 711 ----------------------~---------------------~~~~~~~~~------------~--------~~---- 723 (1665)
. ....+..|. + ..
T Consensus 227 ~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 227 LLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred HHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 0 000000000 0 00
Q ss_pred -----------------------------------------------HHHHHHHh---CCCeEEEEecChhHHHHHHHHH
Q 000324 724 -----------------------------------------------YEKVVAVA---GKHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 724 -----------------------------------------------~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~L 753 (1665)
.+.+.+.. ++.++|||++-|..++.++..|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 00111111 2458999999999999999999
Q ss_pred HHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccc
Q 000324 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~G 833 (1665)
...+.... ..|+.. +-.-+..||++.++..+++.|+.|..+|||||++.+.|
T Consensus 387 ~~~~~~~~--~rFiGQ--------------------------a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEG 438 (542)
T COG1111 387 KKIGIKAR--VRFIGQ--------------------------ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEG 438 (542)
T ss_pred HhcCCcce--eEEeec--------------------------cccccccccCHHHHHHHHHHHhcCCceEEEEccccccc
Confidence 98876543 234321 11123489999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCC--cHHHHHH
Q 000324 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLS 896 (1665)
Q Consensus 834 VdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ 896 (1665)
+|+|++++||. |+|-. |..-++||.||+||. +.|.++++.+.. +..||.+
T Consensus 439 LDIp~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 439 LDIPEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred CCCCcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHH
Confidence 99999999998 99876 888999999999994 789999999886 4555553
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=341.38 Aligned_cols=294 Identities=21% Similarity=0.341 Sum_probs=207.5
Q ss_pred EECCCCChHHHHHHHHHHHHHHhhc--------CCCCeEEEEEcccHHHHHHHHHHHHHHh----------cC-CCCcEE
Q 000324 1362 VAAPTGSGKTICSEFAILRNHQKAS--------ETGVMRAVYIAPLEALAKERYRDWEIKF----------GQ-GLGMRV 1422 (1665)
Q Consensus 1362 v~ApTGSGKTl~a~l~il~~l~~~~--------~~~~~r~l~I~PtreLa~Q~~~~~~~~~----------~~-~~~i~v 1422 (1665)
|+||||||||+||+||++..+.... ...++++|||+|++||+.|++++++..+ +. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887532 1124599999999999999999987422 22 257899
Q ss_pred EEEeCCCccchh--cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-CchhHHHHHHHHHHHHhhc
Q 000324 1423 VELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1423 ~~l~G~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~-~g~~~e~~~srl~~i~~~~ 1498 (1665)
..++|+++.+.+ .+ +.+||||+|||+|..++.+ +.+..+++|++|||||+|.+.+. +|..++..++|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999988753 33 4679999999999988764 34567999999999999999874 6999999999998873
Q ss_pred CCCCeEEEEcccCCChHHHHHHhcccCC-cEEecCCCCCccceEEEEeecccchhh------------HHHHhcChhHHH
Q 000324 1499 ENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFE------------ARMQAMTKPTFT 1565 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n~~dl~~wl~~~~~-~~~~f~~~~rpv~l~i~i~~~~~~~~~------------~~~~~~~k~~~~ 1565 (1665)
+.+.|+|+||||++|.+++++|++.... .+++ .+..++.++.+.+...+..... .+...+......
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 5689999999999999999999987533 3443 5666777776655332211110 011111222233
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh---cccEEEEcCC
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL---RHGVGYLHEG 1642 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l---~~gI~~~H~~ 1642 (1665)
.++..+..++++|||||||+.|+.++..|.......... . ..............+....... ...+.+|||+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-S----PSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-c----ccccchhhhhhhccccchhccccccceeeeecccc
Confidence 445544567889999999999999999996533210000 0 0000000011111111111111 2347899999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEC
Q 000324 1643 LNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|++++|..+++.|++|+++||||
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVA 333 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVA 333 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEe
Confidence 99999999999999999999998
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=283.97 Aligned_cols=284 Identities=18% Similarity=0.234 Sum_probs=214.9
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
-+|.+.+.+.+.. |+..|||+|+.|+|.++.|+| ++.||.||||||.+|.+|+++.|...+.+. -++|+.|||||+
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP~gi--FalvlTPTrELA 88 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDPYGI--FALVLTPTRELA 88 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCCCcc--eEEEecchHHHH
Confidence 3444455555555 899999999999999999988 999999999999999999999999965544 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhc--cccCCCccEEEeecccccCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQ--RKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~--~~~l~~v~llViDEaH~l~~ 1478 (1665)
.|+.+.|. .+++.+++++..+.|+++.- ..+.+++|+||+|||++..+++.... ...+++++++|+||||.+++
T Consensus 89 ~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~ 167 (442)
T KOG0340|consen 89 LQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA 167 (442)
T ss_pred HHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc
Confidence 99999999 88999999999999997653 45667899999999999988875311 23578999999999999987
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCc--EEecCC-CCCccceEEEEeecccchhhHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG--LFNFPP-GVRPVPLEIHIQGVDITNFEAR 1555 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~--~~~f~~-~~rpv~l~i~i~~~~~~~~~~~ 1555 (1665)
.. +-..+.-+.+.+|.+.|.++||||+.+. +....++.... .|.+.. ..-+++-... +.
T Consensus 168 ~~------f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~e~~~~vstvetL~----------q~ 229 (442)
T KOG0340|consen 168 GC------FPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFELEVIDGVSTVETLY----------QG 229 (442)
T ss_pred cc------hhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEEeccCCCCchhhhh----------hh
Confidence 65 5555666667778889999999999775 33344443221 222111 0111111111 11
Q ss_pred HHhcC---hhH--HHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHH
Q 000324 1556 MQAMT---KPT--FTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (1665)
Q Consensus 1556 ~~~~~---k~~--~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (1665)
+.... +.+ +..+...- ...+.++|||++.+.|+.++.-|
T Consensus 230 yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l----------------------------------- 274 (442)
T KOG0340|consen 230 YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL----------------------------------- 274 (442)
T ss_pred eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH-----------------------------------
Confidence 11111 111 22222221 13677999999999999999777
Q ss_pred HHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1630 ~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+...++.+||.|++++|...+.+|+++.++||||
T Consensus 275 ~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ilia 310 (442)
T KOG0340|consen 275 KNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIA 310 (442)
T ss_pred hhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEE
Confidence 446778999999999999999999999999999998
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=276.43 Aligned_cols=287 Identities=17% Similarity=0.316 Sum_probs=225.6
Q ss_pred CCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1319 LQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1319 l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
.+.+...+|++++++.+|. ||..|+.||+.|++.++.|++ |+++|..|+|||.+|.+.+++.+.-..... +++++.
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~r~t--Q~lils 102 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISVRET--QALILS 102 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccccee--eEEEec
Confidence 3444556889999999999 999999999999999999888 999999999999999999998777644444 899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcc--chhccC-CCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc
Q 000324 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (1665)
Q Consensus 1398 PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~--~~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH 1474 (1665)
|||||+.|+.+... .++..+++++-.+.|+.+. |.+.+. +.|++.+||+++.+++++ .......++++|+||+|
T Consensus 103 PTRELa~Qi~~vi~-alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 103 PTRELAVQIQKVIL-ALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEAD 179 (400)
T ss_pred ChHHHHHHHHHHHH-HhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccHH
Confidence 99999999999998 7898999999999998774 344444 449999999999999987 55567899999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1475 ~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
.+++.+ +-..+-.+.+.+++..|++++|||+|.. .++.+.+... |+.+-+.-...+.....
T Consensus 180 emL~kg------fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtd------------pvrilvkrdeltlEgIK 241 (400)
T KOG0328|consen 180 EMLNKG------FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTD------------PVRILVKRDELTLEGIK 241 (400)
T ss_pred HHHHhh------HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCC------------ceeEEEecCCCchhhhh
Confidence 988765 6677777778889999999999999863 3444444332 33333333333333334
Q ss_pred HHHHhcChhH--HHHHH---HHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHH
Q 000324 1554 ARMQAMTKPT--FTAIV---QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (1665)
Q Consensus 1554 ~~~~~~~k~~--~~~i~---~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (1665)
+.+....+.. +..++ .. ..-.+++|||||++.+.++...+.
T Consensus 242 qf~v~ve~EewKfdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~--------------------------------- 287 (400)
T KOG0328|consen 242 QFFVAVEKEEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMR--------------------------------- 287 (400)
T ss_pred hheeeechhhhhHhHHHHHhhh-hehheEEEEecccchhhHHHHHHH---------------------------------
Confidence 4443333322 22232 33 234579999999999999998773
Q ss_pred HHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1629 ~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+.|..+||+|++++|..++..|++|+.+||||
T Consensus 288 --~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 288 --EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred --hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 24456999999999999999999999999999997
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=288.85 Aligned_cols=315 Identities=23% Similarity=0.282 Sum_probs=229.8
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCC
Q 000324 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368 (1665)
Q Consensus 1290 wl~~e~~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGS 1368 (1665)
|-.......+++.+-.+|.+-... .-+.++.+.+..+.. ||..|+|||.+|+|..++.+| +|..|.|||
T Consensus 224 wri~redynis~kg~~lpnplrnw---------EE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD-~igvaETgs 293 (673)
T KOG0333|consen 224 WRIFREDYNISIKGGRLPNPLRNW---------EESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD-PIGVAETGS 293 (673)
T ss_pred ceeeecceeeeecCCCCCccccCh---------hhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC-eeeEEeccC
Confidence 545555566777777777643322 223344556665555 899999999999999888666 999999999
Q ss_pred hHHHHHHHHHHHHHHhhcC-------CCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCC
Q 000324 1369 GKTICSEFAILRNHQKASE-------TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEK 1438 (1665)
Q Consensus 1369 GKTl~a~l~il~~l~~~~~-------~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~ 1438 (1665)
|||++|.+|++..+...++ ..+|++++++|||+|+.|+..+-. +|++.+|++++.+.|+.+.+.+ +-.+
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhcc
Confidence 9999999999998877542 235799999999999999999998 8999999999999999998744 5568
Q ss_pred CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHHHHHHHH------------------hhcC
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIA------------------SQVE 1499 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~~i~------------------~~~~ 1499 (1665)
|+|+||||++|.+.+.+ ....+..+.+||+|||+.+.+++ -+.+..+++.|-... ....
T Consensus 373 ceiviatPgrLid~Len--r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred ceeeecCchHHHHHHHH--HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 89999999999887765 44567899999999999998866 444444554442110 0000
Q ss_pred CCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC----hhHHHHHHHHhcCC
Q 000324 1500 NKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT----KPTFTAIVQHAKNE 1574 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~----k~~~~~i~~~l~~~ 1574 (1665)
.-.|.++||||++.+ ..++.-+-. +|+-+.+...+-+.+...+....|. ...+..++.. ...
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr------------~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~-~~~ 517 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLR------------RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILES-NFD 517 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhh------------CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHh-CCC
Confidence 127899999999984 345544322 2222222222222222222222221 1122233333 346
Q ss_pred CCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHH
Q 000324 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654 (1665)
Q Consensus 1575 ~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~ 1654 (1665)
.|+|||||+++.|..+|..| +..++.+..+||+-++++|..+++.
T Consensus 518 ppiIIFvN~kk~~d~lAk~L-----------------------------------eK~g~~~~tlHg~k~qeQRe~aL~~ 562 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKIL-----------------------------------EKAGYKVTTLHGGKSQEQRENALAD 562 (673)
T ss_pred CCEEEEEechhhHHHHHHHH-----------------------------------hhccceEEEeeCCccHHHHHHHHHH
Confidence 78999999999999999888 5577889999999999999999999
Q ss_pred HhcCCceEEEC
Q 000324 1655 FEAGKIKICYR 1665 (1665)
Q Consensus 1655 F~~G~i~VLVC 1665 (1665)
|++|..+||||
T Consensus 563 fr~~t~dIlVa 573 (673)
T KOG0333|consen 563 FREGTGDILVA 573 (673)
T ss_pred HHhcCCCEEEE
Confidence 99999999998
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=309.97 Aligned_cols=310 Identities=15% Similarity=0.163 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..|+++|.++++.++.++ +.+++||||+|||.++...+...+.. ...+++|++||++|+.|+.++|.++
T Consensus 113 ~~~r~~Q~~av~~~l~~~-~~il~apTGsGKT~i~~~l~~~~~~~----------~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNN-RRLLNLPTSAGKSLIQYLLSRYYLEN----------YEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHhcC-ceEEEeCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 489999999999988764 58999999999999875433222222 1338999999999999999999986
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHH
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (1665)
+......+..+.|+.... ...+|+|+||+++. +... .+++.+++||+||||++.+ ..++.++..+
T Consensus 182 ~~~~~~~~~~i~~g~~~~----~~~~I~VaT~qsl~---~~~~--~~~~~~~~iIvDEaH~~~~---~~~~~il~~~--- 246 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD----TDAPIVVSTWQSAV---KQPK--EWFDQFGMVIVDECHLFTG---KSLTSIITKL--- 246 (501)
T ss_pred ccccccceeEEecCcccC----CCCCEEEeeHHHHh---hchh--hhccccCEEEEEchhcccc---hhHHHHHHhh---
Confidence 543334454555554332 35789999999752 2221 3567899999999999864 3355444432
Q ss_pred HhhccCCeeEEEEcccCCChHH----HHHHHhccccCceEEecC-----CCccccceEEEEe--eecC--------chhH
Q 000324 654 IETTKEHIRLVGLSATLPNYED----VALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG--IQVK--------KPLQ 714 (1665)
Q Consensus 654 ~~~~~~~~riV~lSATl~n~~d----v~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~--~~~~--------~~~~ 714 (1665)
+...+++|||||+++... +..+++.. ...... ....+++....+. ++.. ....
T Consensus 247 ----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 318 (501)
T PHA02558 247 ----DNCKFKFGLTGSLRDGKANILQYVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQE 318 (501)
T ss_pred ----hccceEEEEeccCCCccccHHHHHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHH
Confidence 345678999999865221 11122210 000000 0000111111110 0000 0000
Q ss_pred HH------HHHHHHHHHHHHHHh-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccc
Q 000324 715 RF------QLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1665)
Q Consensus 715 ~~------~~~~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 787 (1665)
.+ ..-+..+...+.... .+++++|||.+.+++..+++.|...+.
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~----------------------------- 369 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYD----------------------------- 369 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCC-----------------------------
Confidence 00 011122222222222 356889999999999999988876432
Q ss_pred hhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEec-cccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 788 ~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
.+.++||+|+..+|..+++.|++|...||||| +++++|+|+|.+++||. +.|.+ |...|+|
T Consensus 370 --------~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~Q 431 (501)
T PHA02558 370 --------KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQ 431 (501)
T ss_pred --------CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhh
Confidence 36778999999999999999999999999998 89999999999999998 77776 7788999
Q ss_pred hhcccCCCCCCCceEEEEE
Q 000324 867 MLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 867 r~GRAGR~g~d~~G~~iil 885 (1665)
|+||++|++.+ ...|+++
T Consensus 432 riGR~~R~~~~-K~~~~i~ 449 (501)
T PHA02558 432 SIGRVLRKHGS-KSIATVW 449 (501)
T ss_pred hhhccccCCCC-CceEEEE
Confidence 99999998733 3345554
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=286.89 Aligned_cols=282 Identities=24% Similarity=0.380 Sum_probs=223.3
Q ss_pred HHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1331 LYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1331 ~~~~l~~--~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
.++.++. |+..+.|+|+-|+.+-+-.++|.+|+++|+||||++.++|=+..+.. .++ +.||++|..+||+|.+.
T Consensus 204 ~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~--KmlfLvPLVALANQKy~ 279 (830)
T COG1202 204 KFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGK--KMLFLVPLVALANQKYE 279 (830)
T ss_pred HHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCC--eEEEEehhHHhhcchHH
Confidence 3455544 79999999999999966556779999999999999999999988877 244 89999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEeCCCccc-------hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CC
Q 000324 1409 DWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG 1480 (1665)
Q Consensus 1409 ~~~~~~~~~~~i~v~~l~G~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~ 1480 (1665)
+|+.++++ +|+++..-.|-.-.. ...-..+||||+|.|-++.++|.. ..+.+|+.|||||+|++.+ .+
T Consensus 280 dF~~rYs~-LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 280 DFKERYSK-LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred HHHHHhhc-ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchhc
Confidence 99999965 577777766643222 112346799999999999999863 6789999999999999987 77
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeeccc-chhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI-TNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~-~~~~~~~~~~ 1559 (1665)
|+.+.-++.|++++. +..|+|+||||+.|+.++|..+|... +....||||++-|+.-... .........+
T Consensus 356 G~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~L 426 (830)
T COG1202 356 GPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIARL 426 (830)
T ss_pred ccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHHH
Confidence 999999999999884 48999999999999999999999864 3345699999988753321 1111222222
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
.+..+...... .-.+++|||++||+.|..+|..|. .-+..+..|
T Consensus 427 ~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~-----------------------------------~kG~~a~pY 470 (830)
T COG1202 427 VKREFSTESSK-GYRGQTIVFTYSRRRCHELADALT-----------------------------------GKGLKAAPY 470 (830)
T ss_pred HHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhh-----------------------------------cCCcccccc
Confidence 23223222222 335789999999999999997772 124567899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|+||+..+|+.|+..|.+|.+.++|.
T Consensus 471 HaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 471 HAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred cCCCcHHHHHHHHHHHhcCCcceEee
Confidence 99999999999999999999999873
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=280.45 Aligned_cols=287 Identities=19% Similarity=0.269 Sum_probs=213.3
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcC---CCCeEEEEEcccHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEAL 1402 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~---~~~~r~l~I~PtreL 1402 (1665)
|.+.+.+.+-. ||.++||+|..++|.++.+.| |++.||||||||+||++|++..+..... .+.+-+|||+|||||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 45567777766 899999999999999999777 9999999999999999999999954322 223569999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCccchh----ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1403 a~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~----~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
+.|+.++.........++++.++.||.+.+.. .-++++|+||||||+.+++++-.....+.++.++|+||||++++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 99999999955455578899999999766522 23567899999999999998854455677999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeeccc-ch-hhHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI-TN-FEAR 1555 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~-~~-~~~~ 1555 (1665)
.+ |...++.|.+.+|+..|+=+||||..... +++.. |.. +|+.+.+....... +. ....
T Consensus 172 mg------Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~ra-GLR-----------Npv~V~V~~k~~~~tPS~L~~~ 233 (567)
T KOG0345|consen 172 MG------FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARA-GLR-----------NPVRVSVKEKSKSATPSSLALE 233 (567)
T ss_pred cc------HHHHHHHHHHhcccccccccccchhhHHHHHHHHh-hcc-----------CceeeeecccccccCchhhcce
Confidence 98 99999999999999999999999987643 44432 222 23333322222100 00 0000
Q ss_pred -HHhcChhHHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1556 -MQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1556 -~~~~~k~~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
+..-....+..+...+ ...+++|||.+|...++..+..+..+ ..
T Consensus 234 Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~---------------------------------l~ 280 (567)
T KOG0345|consen 234 YLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL---------------------------------LK 280 (567)
T ss_pred eeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH---------------------------------hC
Confidence 0000111122222222 34578999999999888877666321 13
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+..+||.|++..|..+++.|++-.-.||+|
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~ 313 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFC 313 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhccCceEEe
Confidence 456899999999999999999999988889988
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-30 Score=277.69 Aligned_cols=279 Identities=18% Similarity=0.283 Sum_probs=215.4
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
.-|+.+++..+|. ||..|+|+|.+++|..+.|+| +++.|..|+|||.+|.+|+|..+... ....++++++||||||
T Consensus 90 ~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelA 166 (459)
T KOG0326|consen 90 YCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELA 166 (459)
T ss_pred hhhhHHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhh
Confidence 4567889999998 899999999999999999887 99999999999999999999998873 3345999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccch---hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ- 1479 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~- 1479 (1665)
.|+.+.++ .+++.+|++|...+|+++... ++....|++|+||+++.++..+ .-..++++..+|+||||.+++.
T Consensus 167 LQtSqvc~-~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 167 LQTSQVCK-ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred HHHHHHHH-HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchh
Confidence 99999888 889999999999999998763 3445569999999999999876 5556889999999999999874
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHh
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (1665)
Q Consensus 1480 ~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~ 1558 (1665)
+++.++. +...+|+..|++++|||+|.. ..+....-.. ....|.-....+ ....+.+..
T Consensus 244 F~~~~e~-------li~~lP~~rQillySATFP~tVk~Fm~~~l~k-Py~INLM~eLtl------------~GvtQyYaf 303 (459)
T KOG0326|consen 244 FQPIVEK-------LISFLPKERQILLYSATFPLTVKGFMDRHLKK-PYEINLMEELTL------------KGVTQYYAF 303 (459)
T ss_pred hhhHHHH-------HHHhCCccceeeEEecccchhHHHHHHHhccC-cceeehhhhhhh------------cchhhheee
Confidence 4444444 445679999999999999974 2332222111 112221111111 111111111
Q ss_pred cC----hhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1559 MT----KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1559 ~~----k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
+. -..+..+... ..-.++||||||...++.+|..+ ..+++
T Consensus 304 V~e~qKvhCLntLfsk-LqINQsIIFCNS~~rVELLAkKI-----------------------------------TelGy 347 (459)
T KOG0326|consen 304 VEERQKVHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKI-----------------------------------TELGY 347 (459)
T ss_pred echhhhhhhHHHHHHH-hcccceEEEeccchHhHHHHHHH-----------------------------------Hhccc
Confidence 11 1122333333 34467999999999999999887 34788
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+-|+|+.|-+++|..|.+.|++|+.+.|||
T Consensus 348 scyyiHakM~Q~hRNrVFHdFr~G~crnLVc 378 (459)
T KOG0326|consen 348 SCYYIHAKMAQEHRNRVFHDFRNGKCRNLVC 378 (459)
T ss_pred hhhHHHHHHHHhhhhhhhhhhhccccceeee
Confidence 8999999999999999999999999999999
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=283.29 Aligned_cols=291 Identities=19% Similarity=0.194 Sum_probs=228.7
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc--CCCCeEEEEEcccHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~--~~~~~r~l~I~PtreLa 1403 (1665)
|....+.++.. ||.++|++|..+++.++.|.| +++.|.||||||++|++|++..+...+ +..+..+|||+||||||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkD-vl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA 167 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKD-VLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELA 167 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCcc-ceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHH
Confidence 44455666666 999999999999999999886 999999999999999999999988753 23345899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|++.+.++.+....++.+..+.||.... .++...++|+|||||+|.+++.+... ....+++++|+||||++++.+
T Consensus 168 ~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~G 246 (543)
T KOG0342|consen 168 MQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIG 246 (543)
T ss_pred HHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcc
Confidence 99999999665544489999999998765 33555779999999999999987554 456788999999999999888
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|-..|..|...++...|.++||||.+. .++++.-.-.......+......+...+---+++-......++
T Consensus 247 ------F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f--- 317 (543)
T KOG0342|consen 247 ------FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF--- 317 (543)
T ss_pred ------cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH---
Confidence 788888888999999999999999987 5677766544444455555555444443333333222222221
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
...+..+.++ ....++||||+|...+..+|..| ..+...|--+
T Consensus 318 -~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL-----------------------------------~~~dlpv~ei 360 (543)
T KOG0342|consen 318 -SLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELL-----------------------------------NYIDLPVLEI 360 (543)
T ss_pred -HHHHHHHHHh-cCCceEEEEechhhHHHHHHHHH-----------------------------------hhcCCchhhh
Confidence 1233444444 33478999999999999999666 3456678899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||++++..|..+...|++-+--||||
T Consensus 361 Hgk~~Q~kRT~~~~~F~kaesgIL~c 386 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAESGILVC 386 (543)
T ss_pred hcCCcccccchHHHHHhhcccceEEe
Confidence 99999999999999999999999999
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=303.38 Aligned_cols=428 Identities=17% Similarity=0.176 Sum_probs=291.1
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCC
Q 000324 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYD 578 (1665)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~g 578 (1665)
+.+.+-.+++.+.+++|+|.||||||+.....||....... ...+|++..|+|--|..+++++..... ..|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 34445456788899999999999999999999998876542 356899999999999999999886543 345
Q ss_pred cEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhcc
Q 000324 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (1665)
Q Consensus 579 i~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (1665)
-.|+.-.+-.+ +...++.+.+||.+ +++|+......+..+.+||+||+|.-+-+ ...+-.++..++ ...
T Consensus 249 ~~VGYqvrl~~---~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i~-~DflLi~lk~lL----~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLES---KRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSIN-TDFLLILLKDLL----PRN 317 (924)
T ss_pred CeeeEEEeeec---ccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccCC-cccHHHHHHHHh----hhC
Confidence 45554443322 22235899999999 77777766788999999999999965431 112333333332 245
Q ss_pred CCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEe-------e----------ecCc----------
Q 000324 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-------I----------QVKK---------- 711 (1665)
Q Consensus 659 ~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-------~----------~~~~---------- 711 (1665)
++.++|+||||+ |.+.+..|++..+ ++... .|..|+..+|.. + .+..
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~p---vi~i~--grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGCP---VITIP--GRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCCc---eEeec--CCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999999 6889999998554 22222 222232222210 0 0000
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 712 ~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
.......+...+...+.+....+.+|||.++-.++..+...|.......+.
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------- 442 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------- 442 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc-----------------------------
Confidence 000001111112222323333689999999999999999888764432221
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHH
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLD 863 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~ 863 (1665)
..+-+...|+.|+..+++.|+.....|..+|++||++++.+|.+|++.+||+. -..||+..+ ..+|+|.+.
T Consensus 443 -~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAn 521 (924)
T KOG0920|consen 443 -LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKAN 521 (924)
T ss_pred -cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccc
Confidence 11235677999999999999999999999999999999999999999999985 456888765 347899999
Q ss_pred HHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhcc-ccChHHHHHHHHhhHHHH
Q 000324 864 IMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT-VQNAKEACNWIGYTYLYI 942 (1665)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~-i~~~~~~~~wl~~t~~~~ 942 (1665)
..||.|||||. ..|.||-+++... |.+++. ..++.+.++..|- |+++.. +-...+...+|+
T Consensus 522 a~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~-----~~q~PEilR~pL~-~l~L~iK~l~~~~~~~fLs------ 583 (924)
T KOG0920|consen 522 AKQRRGRAGRV---RPGICYHLYTRSR---YEKLML-----AYQLPEILRTPLE-ELCLHIKVLEQGSIKAFLS------ 583 (924)
T ss_pred hHHhcccccCc---cCCeeEEeechhh---hhhccc-----ccCChHHHhChHH-HhhheeeeccCCCHHHHHH------
Confidence 99999999998 4899999998654 333322 2333333333222 233221 223333334443
Q ss_pred HhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCC
Q 000324 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (1665)
Q Consensus 943 r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1022 (1665)
+++..| ..+-|..|+..|.+.|.+..++ .+|+||+.+|.+++++.-.++..-..-.
T Consensus 584 kaldpP-------------------~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~if 639 (924)
T KOG0920|consen 584 KALDPP-------------------PADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAIF 639 (924)
T ss_pred HhcCCC-------------------ChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhhc
Confidence 222222 1246889999999999998664 8999999999999999988887644333
Q ss_pred CC
Q 000324 1023 TM 1024 (1665)
Q Consensus 1023 ~~ 1024 (1665)
.|
T Consensus 640 ~c 641 (924)
T KOG0920|consen 640 GC 641 (924)
T ss_pred cc
Confidence 33
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=274.56 Aligned_cols=330 Identities=18% Similarity=0.300 Sum_probs=234.8
Q ss_pred hHhhcCCCCC-CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 486 AQPAFKGMTQ-LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 486 ~~~~f~g~~~-l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
+.+.| |+.+ =++.|.+++..+..++.+|.||+|||+||++||.||.|-. +..+|++.|..||+.
T Consensus 11 LKK~F-Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 11 LKKLF-GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHh-CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHHHHHH
Confidence 44555 4543 3689999999999999999999999999999999998854 226899999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHh---------hhccccEEEeChhhH-----HHHHhhcCCCccccceeEEEEe
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ---------QIEETQIIVTTPEKW-----DIITRKSGDRTYTQLVKLLIID 630 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~---------~~~~~~IiV~TPekl-----d~l~r~~~~~~~l~~v~liIiD 630 (1665)
.+.+.+.++ .+.+..+.+..+.... ...+..+++-|||.. .-++... ..-+.++++|+|
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEec
Confidence 999998763 3445445443332211 123567999999973 2222222 233457899999
Q ss_pred ccccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEe-cCCCccccceEEE
Q 000324 631 EIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYF-DNSYRPVPLSQQY 704 (1665)
Q Consensus 631 EaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f-~~~~rpv~l~~~~ 704 (1665)
|||++.. ++.|.+-.+-+ +.+..+++..|+|+||... -+|+..-|+.. +++-.| .+.||..- |
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~-----LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~NL----F 217 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGS-----LRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRDNL----F 217 (641)
T ss_pred hhhhHhhhccccCcchhhhhh-----HHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhhhh----h
Confidence 9999965 46676654332 2345678999999999754 46777777654 333333 23444311 1
Q ss_pred EeeecCch-hHHHHHHHHHHHHHHHH-----HhC---CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHH
Q 000324 705 IGIQVKKP-LQRFQLMNDLCYEKVVA-----VAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (1665)
Q Consensus 705 ~~~~~~~~-~~~~~~~~~~~~~~i~~-----~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~ 775 (1665)
+.+..++. ..-+..+.+.+...+-. ..+ .+..||||.||.+|+++|-.|...++..
T Consensus 218 YD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A--------------- 282 (641)
T KOG0352|consen 218 YDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPA--------------- 282 (641)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcch---------------
Confidence 11111111 01122222222221110 001 4578999999999999999887766433
Q ss_pred HHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCC
Q 000324 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (1665)
Q Consensus 776 ~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~ 855 (1665)
-.+|+||-..+|.+|.+.+.+|++.||+||..+++|||-|+|++||+ ||++.
T Consensus 283 ----------------------~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q-- 334 (641)
T KOG0352|consen 283 ----------------------MAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ-- 334 (641)
T ss_pred ----------------------HHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh--
Confidence 23599999999999999999999999999999999999999999999 99987
Q ss_pred cccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHh
Q 000324 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 856 ~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (1665)
++.-|.|..|||||.| ....|-++++.++.....-+
T Consensus 335 ----n~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 335 ----NLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred ----hhHHHHHhccccccCC--CccceeeeecccchHHHHHH
Confidence 8999999999999998 77889999998887665433
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=299.58 Aligned_cols=271 Identities=21% Similarity=0.339 Sum_probs=197.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1332 ~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
++..| ||..|+|+|.++++.++.+++ ++++||||||||+||++|++. ..+ .+|||+|+++|+.|++..+.
T Consensus 3 l~~~~-g~~~~r~~Q~~ai~~~l~g~d-vlv~apTGsGKTl~y~lp~l~------~~~--~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVF-GLSSFRPVQLEVINAVLLGRD-CFVVMPTGGGKSLCYQLPALC------SDG--ITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCCcHhHHHHHHHHH------cCC--cEEEEecHHHHHHHHHHHHH
Confidence 34444 599999999999999999875 999999999999999999983 233 79999999999999999887
Q ss_pred HHhcCCCCcEEEEEeCCCccchh-----c--cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhH
Q 000324 1412 IKFGQGLGMRVVELTGETAMDLK-----L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~~~-----~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~ 1484 (1665)
. .|+.+..++|+...+.. . ....+|+++||+++....+.+.......++++|||||||++++ +|..+
T Consensus 73 -~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 73 -A----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred -H----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 3 36788888887665411 1 1246899999999864322211111467899999999999975 45566
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChh
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~ 1562 (1665)
+..+.++..+...+ ++.++++||||+++. .++..+++.....++..+. .+| .+...+...... ....
T Consensus 147 r~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~r~-nl~~~v~~~~~~--------~~~~ 215 (470)
T TIGR00614 147 RPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-DRP-NLYYEVRRKTPK--------ILED 215 (470)
T ss_pred HHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-CCC-CcEEEEEeCCcc--------HHHH
Confidence 66666666666554 478899999999874 5888998876655544322 233 222222211100 0011
Q ss_pred HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCC
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~ 1642 (1665)
....+... .+++.+||||+|+++|+.++..|. ..+..++.|||+
T Consensus 216 l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~-----------------------------------~~g~~~~~~H~~ 259 (470)
T TIGR00614 216 LLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQ-----------------------------------NLGIAAGAYHAG 259 (470)
T ss_pred HHHHHHHh-cCCCceEEEECcHHHHHHHHHHHH-----------------------------------hcCCCeeEeeCC
Confidence 12222222 355668999999999999998872 245678999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEC
Q 000324 1643 LNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|++.+|..+++.|++|.++||||
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVa 282 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVA 282 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999999999997
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=292.05 Aligned_cols=366 Identities=26% Similarity=0.391 Sum_probs=236.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.+..+|.+.+.. ...++.++|+|||.+|||.+...+|=..+... +...+||++|+++|++|+...+..++
T Consensus 511 ~Pd~WQ~elLDs-vDr~eSavIVAPTSaGKTfisfY~iEKVLRes---------D~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDS-VDRNESAVIVAPTSAGKTFISFYAIEKVLRES---------DSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhh-hhcccceEEEeeccCCceeccHHHHHHHHhhc---------CCCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999986 46678899999999999999888877776554 23479999999999999999998888
Q ss_pred c-cCCcEEEEEECCCcccHhh-hccccEEEeChhhHHHHHhh-cCCCccccceeEEEEeccccccc-CCchHHHHHHHHH
Q 000324 575 Q-MYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (1665)
Q Consensus 575 ~-~~gi~V~~ltGd~~~~~~~-~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~ 650 (1665)
. ..-.+...+-|+...+-+. .-+|+|+||-||.++.++-. .....+..+++++|+||+|+++. +.|..+|.++--
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 4 2212223333443322221 13799999999999776655 22346889999999999999987 466666655432
Q ss_pred HHHHhhccCCeeEEEEcccCCChHHHHHHHhccc-----cCceEEecCC---------------------------Cccc
Q 000324 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL-----EKGLFYFDNS---------------------------YRPV 698 (1665)
Q Consensus 651 ~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~-----~~~~~~f~~~---------------------------~rpv 698 (1665)
.++.++++|||+.|+..+..|+.... ...+..+... .|.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 36789999999999999999997210 0001111000 0000
Q ss_pred cc----------eEEEEeeec----------------------------CchhH-----------H----------HHHH
Q 000324 699 PL----------SQQYIGIQV----------------------------KKPLQ-----------R----------FQLM 719 (1665)
Q Consensus 699 ~l----------~~~~~~~~~----------------------------~~~~~-----------~----------~~~~ 719 (1665)
.. ...+..+.. ..... . ....
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 00 000000000 00000 0 0000
Q ss_pred H-------------------HHHHHHHH----HHh--CCCeEEEEecChhHHHHHHHHHHHHhhhcc-------------
Q 000324 720 N-------------------DLCYEKVV----AVA--GKHQVLIFVHSRKETAKTARAIRDTALEND------------- 761 (1665)
Q Consensus 720 ~-------------------~~~~~~i~----~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~------------- 761 (1665)
. +.+.+.+. ... ..-|.|+|-..|..|+++|...........
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 00000111 111 134899999999888877765432211000
Q ss_pred ----cc-------ccccc------------------------cCch-hHHHHHhhhhcc--ccchhhhhcCCcEEEecCC
Q 000324 762 ----TL-------GRFLK------------------------EDSV-SREILQSHTDMV--KSNDLKDLLPYGFAIHHAG 803 (1665)
Q Consensus 762 ----~l-------~~~~~------------------------~~~~-~~~~l~~~~~~~--~~~~l~~ll~~gv~~~Hag 803 (1665)
.+ ..+.+ +... ....+..+.... .+..+-+++..|+|+||||
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 00 00000 0000 000000001111 2445677888999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEE
Q 000324 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 804 m~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
|++..|..|+-+|+.|++.||+||.||+-|||+|..+||+-|+. -.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceE
Confidence 99999999999999999999999999999999999999997542 235778899999999999999999988
Q ss_pred EEeCC
Q 000324 884 IITGH 888 (1665)
Q Consensus 884 il~~~ 888 (1665)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 87554
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=292.14 Aligned_cols=341 Identities=24% Similarity=0.368 Sum_probs=222.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
++.-.|+.+|.+....|+ .+|+||++|||+|||.+|...+++++.... ++|||++||++-|+.|+...+
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHH
Confidence 345589999999999999 578999999999999999999999987653 469999999999999999888
Q ss_pred HHhhccCCcEEEEEECCC-cccH--hhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCCchHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQ-TLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~-~~~~--~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~i 646 (1665)
+..+.+ ..+....||. .... ......+|+|+||.-+ +.|.....+. ++.+.++||||||.-.. ...|-.+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc--cccHHHH
Confidence 776554 3444445553 3222 2356889999999986 4444433332 78899999999997643 2345555
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCC-hHHHHHHHhc---cc--------------------------------------
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRV---NL-------------------------------------- 684 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~---~~-------------------------------------- 684 (1665)
+...+.. .....||+|||||+.+ .+.+...+.. ..
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 5444332 2223499999999874 2222222210 00
Q ss_pred ----------cCceEEe---cCCCc--c----------ccceEE--EE---------------eee------------cC
Q 000324 685 ----------EKGLFYF---DNSYR--P----------VPLSQQ--YI---------------GIQ------------VK 710 (1665)
Q Consensus 685 ----------~~~~~~f---~~~~r--p----------v~l~~~--~~---------------~~~------------~~ 710 (1665)
..+++.. ...+. + .+-.++ +. ++. ..
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000 00000 0 000001 00 000 00
Q ss_pred chhHH--------------HHHHHHH----------------HHHHHHHH---hCCCeEEEEecChhHHHHHHHHHHHHh
Q 000324 711 KPLQR--------------FQLMNDL----------------CYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (1665)
Q Consensus 711 ~~~~~--------------~~~~~~~----------------~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (1665)
...++ ...|++. +.+.+.++ ....++||||.+|..|..+-.+|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 00000 0011110 11111222 235689999999999999999887521
Q ss_pred hhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCC
Q 000324 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (1665)
Q Consensus 758 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (1665)
........ ++..|-+.-..||++.++.++++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~~--------------------------fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAEI--------------------------FIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccce--------------------------eeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 11000011 1222222234799999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH
Q 000324 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 838 ~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
.+++||. ||..+ ++...+||.|| ||. +.|+++++++..+.
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEV 531 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhH
Confidence 9999999 99877 78999999999 996 58999999985443
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=283.98 Aligned_cols=454 Identities=17% Similarity=0.184 Sum_probs=287.8
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ 583 (1665)
|..+++.+..+||||.||||||+.....+...-..... ..++..|-+..|+|-.|..++.++...++.+|-.|+.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~-----~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ-----SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc-----CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 34456778889999999999999876665554322111 1124477899999999999999999888777767765
Q ss_pred EECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccC----
Q 000324 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE---- 659 (1665)
Q Consensus 584 ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~---- 659 (1665)
... ++......+.|.++|.| +|+|.......+..++.||+||||.-. -....+-.+++|+.+.......
T Consensus 339 qIR---fd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 339 QIR---FDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred EEE---eccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 443 11122246889999999 788887777889999999999999542 1234455566676665554444
Q ss_pred --CeeEEEEcccCCChHHHHHHHhccc-cCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeE
Q 000324 660 --HIRLVGLSATLPNYEDVALFLRVNL-EKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 660 --~~riV~lSATl~n~~dv~~~l~~~~-~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
+.++|.|||||. ..|+..--+..| ..+++.++ -|..|+..||-.-+.... ...+..+.| +|++..+.+.+
T Consensus 412 ~kpLKLIIMSATLR-VsDFtenk~LFpi~pPlikVd--ARQfPVsIHF~krT~~DY--i~eAfrKtc--~IH~kLP~G~I 484 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLR-VSDFTENKRLFPIPPPLIKVD--ARQFPVSIHFNKRTPDDY--IAEAFRKTC--KIHKKLPPGGI 484 (1172)
T ss_pred cCceeEEEEeeeEE-ecccccCceecCCCCceeeee--cccCceEEEeccCCCchH--HHHHHHHHH--HHhhcCCCCcE
Confidence 889999999984 233321111111 11233333 355566666553332211 112222222 34556668899
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccc------ccccccc--------------CchhHHHHHhhhh--------------
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDT------LGRFLKE--------------DSVSREILQSHTD-------------- 782 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~------l~~~~~~--------------~~~~~~~l~~~~~-------------- 782 (1665)
||||....++..+++.|++.....-. .....+. .+...+.+....+
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 99999999999999999987431100 0000000 0000000000000
Q ss_pred -----cccc----------chhhh-------------hcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecccccccc
Q 000324 783 -----MVKS----------NDLKD-------------LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (1665)
Q Consensus 783 -----~~~~----------~~l~~-------------ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GV 834 (1665)
...| ++..+ .-+.-|..+++=|+.+++..|++.-..|..=++|||++++.++
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 0000 01110 1123367789999999999999999999999999999999999
Q ss_pred CCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH-HHHHhh---cCCC
Q 000324 835 NLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR-YYLSLM---NQQL 902 (1665)
Q Consensus 835 dlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~-~y~~ll---~~~~ 902 (1665)
.+|++.+||++ +..||..+| ...|+|.++--||+|||||.| .|+||.+++..-.+ .+..+- -...
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~fS~PEIlk~ 721 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEFSLPEILKK 721 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhhccHHHhhC
Confidence 99999999995 567888877 236899999999999999987 89999998864322 111110 0011
Q ss_pred ccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHc
Q 000324 903 PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRN 982 (1665)
Q Consensus 903 piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~ 982 (1665)
|+|+-.+ .+-...|.+ .-+.+. .+.|. ...++.|.+.|...
T Consensus 722 Pve~lvL---------qMKsMnI~k----------------------VvnFPF---PtpPd-----~~~L~~Aer~L~~L 762 (1172)
T KOG0926|consen 722 PVESLVL---------QMKSMNIDK----------------------VVNFPF---PTPPD-----RSALEKAERRLKAL 762 (1172)
T ss_pred cHHHHHH---------HHHhcCccc----------------------eecCCC---CCCcc-----HHHHHHHHHHHHHh
Confidence 2222111 111111111 111111 11221 13468899999999
Q ss_pred CCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCC
Q 000324 983 NLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023 (1665)
Q Consensus 983 ~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~ 1023 (1665)
|.++.+ | .+|.||..||+|+++|+-.+++.-+-...
T Consensus 763 gALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 763 GALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred cccccc---C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 999864 3 78999999999999999999887544333
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=277.63 Aligned_cols=285 Identities=19% Similarity=0.221 Sum_probs=218.9
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc--CCCCeEEEEEcccHHHHHH
Q 000324 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1329 ~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~--~~~~~r~l~I~PtreLa~Q 1405 (1665)
.+..++|.. +|..+|.||.++||..+.|+| |+..|.||||||++|++|+|.++.... +..|+-||||.||||||.|
T Consensus 78 ~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~Q 156 (758)
T KOG0343|consen 78 QKTLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQ 156 (758)
T ss_pred hHHHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHH
Confidence 455666655 799999999999999999998 999999999999999999999988752 3445689999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchh
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~ 1483 (1665)
++..+. +.++..+.+.+++.||.... ...+.+.+|+||||+|+..++.... .....++.++|+||||++++++
T Consensus 157 tFevL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMG--- 231 (758)
T KOG0343|consen 157 TFEVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMG--- 231 (758)
T ss_pred HHHHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHh---
Confidence 999999 88988899999999998766 3456778999999999998887532 3356789999999999999988
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecC---CCCCccceEEEEeecccchhhHHHHhc
Q 000324 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP---PGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1484 ~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~---~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|-..|..|.+.+|...|.++||||-.. ..|++..--..+ .+..++ ....|..+.....-.+..+-
T Consensus 232 ---Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP-~~vsvhe~a~~atP~~L~Q~y~~v~l~~K------- 300 (758)
T KOG0343|consen 232 ---FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDP-VYVSVHENAVAATPSNLQQSYVIVPLEDK------- 300 (758)
T ss_pred ---HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCC-cEEEEeccccccChhhhhheEEEEehhhH-------
Confidence 888889999999999999999999876 457776432222 222111 11122222222111111110
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
....+..|..| ...++|||++|.++++.++..++... .+..+-.+
T Consensus 301 i~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlr---------------------------------pg~~l~~L 345 (758)
T KOG0343|consen 301 IDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLR---------------------------------PGIPLLAL 345 (758)
T ss_pred HHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcC---------------------------------CCCceeee
Confidence 11223344444 45679999999999999997774311 34457789
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||+|++..|..|...|....--||+|
T Consensus 346 ~G~~~Q~~R~ev~~~F~~~~~~vLF~ 371 (758)
T KOG0343|consen 346 HGTMSQKKRIEVYKKFVRKRAVVLFC 371 (758)
T ss_pred ccchhHHHHHHHHHHHHHhcceEEEe
Confidence 99999999999999999999999998
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-28 Score=274.88 Aligned_cols=285 Identities=21% Similarity=0.300 Sum_probs=221.4
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Ptre 1401 (1665)
++...++.++.. .|.+|+|+|.|++|..+.+++ |+..|-||||||.+|..|++-|+...+ ++.+|.+||+|||||
T Consensus 229 gfDkqLm~airk~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTre 307 (731)
T KOG0339|consen 229 GFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRE 307 (731)
T ss_pred CchHHHHHHHhhhhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHH
Confidence 445566777766 599999999999999999888 999999999999999999999998753 455789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1402 La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
||.|++.+++ +|++..|++++.++|+.+...+ +-.++.||||||+|+.+++.. ...++.++.++|+||+++|.+
T Consensus 308 la~Qi~~eaK-kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfd 384 (731)
T KOG0339|consen 308 LASQIFSEAK-KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFD 384 (731)
T ss_pred HHHHHHHHHH-HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhc
Confidence 9999999999 8999999999999999887633 336789999999999999886 556799999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHH
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1479 ~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~ 1557 (1665)
.+ +...++.|..+..++.|.++||||++-. .-++.-+-..+. |.|..++...+-.+......+.
T Consensus 385 mG------fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpV---------rvVqg~vgean~dITQ~V~V~~ 449 (731)
T KOG0339|consen 385 MG------FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPV---------RVVQGEVGEANEDITQTVSVCP 449 (731)
T ss_pred cc------cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCe---------eEEEeehhccccchhheeeecc
Confidence 88 7888899999999999999999999763 233333322221 2222222221111111111111
Q ss_pred hcChhHHHHHHHHh---cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1558 AMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l---~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
+ ....+..++.++ ...+++||||.....++.++..| ..-++
T Consensus 450 s-~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~L-----------------------------------klk~~ 493 (731)
T KOG0339|consen 450 S-EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANL-----------------------------------KLKGF 493 (731)
T ss_pred C-cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHh-----------------------------------ccccc
Confidence 0 111222333332 45678999999999999999777 33567
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.|..+||.|.+.+|..++..|+.+...|||.
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~Vlva 524 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVA 524 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEE
Confidence 8999999999999999999999999999984
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=271.05 Aligned_cols=289 Identities=19% Similarity=0.237 Sum_probs=215.6
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccH
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~Ptr 1400 (1665)
+|...+++++.. ||.+||-||+.|||.++.|.| +++.|.||||||.+|++|+++.+.... ...++.+++++||+
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 455677777777 899999999999999999886 999999999999999999999987642 22357999999999
Q ss_pred HHHHHHHHHHHHHhcCCC--CcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc
Q 000324 1401 ALAKERYRDWEIKFGQGL--GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~--~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
|||.|+++.+. ++.... .+++..++.+.+.. .-+...++|||+||+++..+..... ...+..+.++|+||||+
T Consensus 104 EL~qQvy~vie-kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~-~~~~~~l~~LVvDEADL 181 (569)
T KOG0346|consen 104 ELAQQVYKVIE-KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV-LEYLDSLSFLVVDEADL 181 (569)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc-chhhhheeeEEechhhh
Confidence 99999999998 444432 35566666544433 3366788999999999998876522 25778999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHH
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~ 1555 (1665)
+++-+ .-..|+.+.+.+|+..|.+++|||+.+.-.-..-+-+....+..+....-|.|-.+..........
T Consensus 182 llsfG------Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~--- 252 (569)
T KOG0346|consen 182 LLSFG------YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE--- 252 (569)
T ss_pred hhhcc------cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc---
Confidence 98766 556788888899999999999999977433333344444455555554444333332222221111
Q ss_pred HHhcChhHH-HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1556 MQAMTKPTF-TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1556 ~~~~~k~~~-~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
.+... .++++.-.-.+++||||||...|..+-..| +.++.
T Consensus 253 ----DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfL-----------------------------------eqFGi 293 (569)
T KOG0346|consen 253 ----DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFL-----------------------------------EQFGI 293 (569)
T ss_pred ----hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHH-----------------------------------HHhCc
Confidence 12211 122222234578999999999999888666 45566
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++++|.||..-|..|++.|..|.++++|+
T Consensus 294 ksciLNseLP~NSR~Hii~QFNkG~YdivIA 324 (569)
T KOG0346|consen 294 KSCILNSELPANSRCHIIEQFNKGLYDIVIA 324 (569)
T ss_pred HhhhhcccccccchhhHHHHhhCcceeEEEE
Confidence 6789999999999999999999999999984
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=303.06 Aligned_cols=282 Identities=19% Similarity=0.270 Sum_probs=197.7
Q ss_pred CCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccH
Q 000324 1321 PLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1321 p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Ptr 1400 (1665)
++|++.--+..+...| |+..|+|+|.++++.++.|++ ++++||||+|||+||++|++.. .+ .+|||+|++
T Consensus 441 ~fpw~~~L~~~lk~~F-G~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~------~G--iTLVISPLi 510 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVF-GNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC------PG--ITLVISPLV 510 (1195)
T ss_pred CCCchHHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc------CC--cEEEEeCHH
Confidence 3444432234445555 599999999999999999877 9999999999999999999842 23 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh-----cc----CCCcEEEEChhhHHH---HHHhhhccccCCCccEE
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL----EKGQIIISTPEKWDA---LSRRWKQRKYVQQVSLF 1468 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~-----~l----~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v~ll 1468 (1665)
+|+.++...+.. .|+++..+.|+.....+ .+ ...+|+++|||+|.. +.+.+........+.+|
T Consensus 511 SLmqDQV~~L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 999977766652 36889999998765421 11 356999999999852 34333222223568999
Q ss_pred EeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEEEee
Q 000324 1469 IIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546 (1665)
Q Consensus 1469 ViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~ 1546 (1665)
||||||++..+ |..++.-...+..+...+ +.+++++||||++. ..++...++.....++. ....|| .+...+..
T Consensus 586 VIDEAHcVSqW-GhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~ 661 (1195)
T PLN03137 586 VIDEAHCVSQW-GHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVP 661 (1195)
T ss_pred ccCcchhhhhc-ccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEec
Confidence 99999999754 455555555555554444 46789999999876 35788888765433332 222344 33322221
Q ss_pred cccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHH
Q 000324 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (1665)
Q Consensus 1547 ~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (1665)
.. . . ........+... ....++||||+||++|+.++..|.
T Consensus 662 k~--k--k----~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~------------------------------- 701 (1195)
T PLN03137 662 KT--K--K----CLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQ------------------------------- 701 (1195)
T ss_pred cc--h--h----HHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHH-------------------------------
Confidence 10 0 0 001111122222 235679999999999999998772
Q ss_pred HHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1627 ~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+++|||||++.+|..+++.|++|+++||||
T Consensus 702 ----~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 702 ----EFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred ----HCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 34667999999999999999999999999999997
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=320.83 Aligned_cols=328 Identities=18% Similarity=0.213 Sum_probs=219.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|| +|+++|.++++.++.+.+ ++++||||||||++++++.+.... .+.+++||+||++|+.|+++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 478 699999999999998865 999999999999976665554321 2458999999999999999999
Q ss_pred HHhhccC--CcEEEEEECCCcccHhh-----h--ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc----
Q 000324 571 SNRLQMY--DVKVRELSGDQTLTRQQ-----I--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---- 637 (1665)
Q Consensus 571 ~~~~~~~--gi~V~~ltGd~~~~~~~-----~--~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---- 637 (1665)
+.....+ ++++..++|+.+...+. + ..++|+|+||+.+....... ...++++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~kn 218 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKN 218 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccc
Confidence 9977654 56778889988765432 1 25899999999763222211 125689999999999864
Q ss_pred --------CCchHHHH----HHH---------------HHHHHHhhccCCee-EEEEcccCCChHHHHHHHhccccCceE
Q 000324 638 --------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGLF 689 (1665)
Q Consensus 638 --------~rg~~le~----iv~---------------r~~~~~~~~~~~~r-iV~lSATl~n~~dv~~~l~~~~~~~~~ 689 (1665)
++.+.+.. ++. ++.......+...+ ++.+|||++...+...+++... .|
T Consensus 219 id~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l---~f 295 (1638)
T PRK14701 219 IDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL---GF 295 (1638)
T ss_pred cchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe---EE
Confidence 45555442 211 11111112233444 5679999986556666664321 12
Q ss_pred EecCCCccc--cceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHH---HHHHHHHHHHhhhccccc
Q 000324 690 YFDNSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTLG 764 (1665)
Q Consensus 690 ~f~~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~l~ 764 (1665)
.... .++. .+.+.++.... ..+ ..+ .+.+ ... +.++||||+|++.+ +.++..|...+.
T Consensus 296 ~v~~-~~~~lr~i~~~yi~~~~---~~k-~~L----~~ll-~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi------ 358 (1638)
T PRK14701 296 EVGS-GRSALRNIVDVYLNPEK---IIK-EHV----RELL-KKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGF------ 358 (1638)
T ss_pred EecC-CCCCCCCcEEEEEECCH---HHH-HHH----HHHH-HhC-CCCeEEEEeccccchHHHHHHHHHHHCCC------
Confidence 2222 2221 23333332211 111 111 1222 222 46899999998864 788888877543
Q ss_pred cccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecc----ccccccCCCc-e
Q 000324 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA-H 839 (1665)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~----tla~GVdlP~-v 839 (1665)
.++.+||+ |..+++.|++|+++|||||+ +++||||+|+ +
T Consensus 359 -------------------------------~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~V 402 (1638)
T PRK14701 359 -------------------------------KIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERI 402 (1638)
T ss_pred -------------------------------eEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCcc
Confidence 35667885 88999999999999999994 8999999999 9
Q ss_pred EEEEecccccCCCCCCcccCCHH-------------HHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcC
Q 000324 840 TVIIKGTQIYNPEKGAWTELSPL-------------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (1665)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~s~~-------------~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (1665)
++||+ |+.|+.++ |+. -.+++.|||||.| ..+.++..+..........++..
T Consensus 403 ryvi~----~~~Pk~~~---~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 403 RFAVF----YGVPKFRF---RVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CEEEE----eCCCCCCc---chhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 99999 88887432 222 3456779999988 45666544444444555555544
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=305.26 Aligned_cols=328 Identities=23% Similarity=0.276 Sum_probs=251.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|...|++-|.+++...+.+.+ ++|.+|||+||++||+||++-. +..+|+|.|..+|++.+...+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 4789999999999998887766 9999999999999999998743 236899999999999998887
Q ss_pred HHhhccCCcEEEEEECCCcccHh-----hh--c--cccEEEeChhhH---HHHHhhcCCCccccceeEEEEeccccccc-
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ-----QI--E--ETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~-----~~--~--~~~IiV~TPekl---d~l~r~~~~~~~l~~v~liIiDEaH~l~d- 637 (1665)
.. .+|....+.|+.....+ .+ + ..+|++.|||++ ..+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 33 47889999998776432 11 2 578999999986 22222222222223389999999999965
Q ss_pred --CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchh
Q 000324 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 638 --~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (1665)
+|.|.|..+..-. ...+.+.+|+||||.+. .+||.+-|+... .-.|..++.+-.+...+..-....
T Consensus 401 gHdFRp~Yk~l~~l~-----~~~~~vP~iALTATAT~~v~~DIi~~L~l~~---~~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLR-----IRFPGVPFIALTATATERVREDVIRSLGLRN---PELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHHH-----hhCCCCCeEEeehhccHHHHHHHHHHhCCCC---cceecccCCCCCceEEEEeccCcc--
Confidence 4667776544322 12345899999999853 578888888752 225566666655544433222111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc
Q 000324 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (1665)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (1665)
. ...+...+........+||||.+|++|+.++..|+..+..
T Consensus 471 ---~--~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---------------------------------- 511 (941)
T KOG0351|consen 471 ---A--LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---------------------------------- 511 (941)
T ss_pred ---c--hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----------------------------------
Confidence 0 1112233445556789999999999999999999987633
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
.+++||||+..+|..|.+.|..++++|+|||=++++|||.|+|+.||| |+.|+ |...|.|-+|||||
T Consensus 512 ---a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 512 ---AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred ---hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 356799999999999999999999999999999999999999999999 99888 99999999999999
Q ss_pred CCCCCceEEEEEeCCCcHHHHHHhhcCC
Q 000324 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (1665)
.| ....|++++...+......++...
T Consensus 579 DG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CC--CcceeEEecchhHHHHHHHHHHcc
Confidence 99 678999999998877777766554
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=298.11 Aligned_cols=369 Identities=21% Similarity=0.187 Sum_probs=235.5
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+.. +.+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999874 5679999999999999999888777653 34799999999999999999988
Q ss_pred hhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCchHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~l 643 (1665)
.+ |.++..++|+.+...+. ....+|+|+||..+ . ..+.++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---~------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---F------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---c------ccccCCCEEEEECCCccccccCcCCCC
Confidence 65 57899999987654321 13579999999853 1 3467899999999997653 234443
Q ss_pred HH-HHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccc-eEEEEeeecCchhHHHHHHHH
Q 000324 644 ES-IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 644 e~-iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
.. -++. ......+.++|++|||. ..+........ .-........+...++ ...++.............+..
T Consensus 281 ~~r~va~----~ra~~~~~~~il~SATp-s~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~ 353 (679)
T PRK05580 281 HARDLAV----VRAKLENIPVVLGSATP-SLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSP 353 (679)
T ss_pred cHHHHHH----HHhhccCCCEEEEcCCC-CHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCH
Confidence 21 1111 11235688999999994 44433332211 1112222222211122 222332211000000012334
Q ss_pred HHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhh----------hcc------
Q 000324 722 LCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMV------ 784 (1665)
Q Consensus 722 ~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~----------~~~------ 784 (1665)
.+++.+.+... ++|+|||+|.|..+..+...-+.....+...+..+..+.......+..+ ..+
T Consensus 354 ~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 354 PLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 55555665554 6699999999987765555555443333322222211111111011111 001
Q ss_pred --------ccchhhhhcC-CcEEEecCCCC--HHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEE--ecccccCC
Q 000324 785 --------KSNDLKDLLP-YGFAIHHAGMT--RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII--KGTQIYNP 851 (1665)
Q Consensus 785 --------~~~~l~~ll~-~gv~~~Hagm~--~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI--~~t~~yd~ 851 (1665)
-.+.|+..++ ..|...|+.+. ..+++.+++.|++|+.+|||+|+.+++|+|+|++++|+ +.+...+.
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 1223444443 47888999987 46799999999999999999999999999999999874 43333333
Q ss_pred CCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 852 ~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
+..+-.+-....|+|++|||||.+ ..|.+++.+...+...+.
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 333333345688999999999965 789999998876644433
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=277.98 Aligned_cols=307 Identities=19% Similarity=0.298 Sum_probs=216.3
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHH
Q 000324 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICS 1374 (1665)
Q Consensus 1296 ~~~vs~~~l~lp~~~~~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a 1374 (1665)
.+++...+...|...+ .+.-..+...+..++.. ++..|||+|+-++|.+.+|++ +++||+||||||.+|
T Consensus 59 ~i~v~~~G~~~p~~i~---------~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 59 DIPVKVSGRDVPPHIP---------TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAF 128 (482)
T ss_pred ceeeeccCCccCCCcc---------cccccchhHHHhhccccccccCCCcceeeccceeecCCc-eEEEccCCCcchHHH
Confidence 4556566666655433 11122333444445544 799999999999999999888 999999999999999
Q ss_pred HHHHHHHHHhhcC--------CCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc---hhccCCCcEEE
Q 000324 1375 EFAILRNHQKASE--------TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIII 1443 (1665)
Q Consensus 1375 ~l~il~~l~~~~~--------~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV 1443 (1665)
++|++.++..... ...|+++|++||||||.|++++.+ +|.-..+++++.++|+.+.. ...-+++||+|
T Consensus 129 LiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~-k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlv 207 (482)
T KOG0335|consen 129 LIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR-KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILV 207 (482)
T ss_pred HHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH-hhcccccceeeeeeCCcchhhhhhhhccCccEEE
Confidence 9999999987521 124799999999999999999999 78777889999999996554 33556789999
Q ss_pred EChhhHHHHHHhhhccccCCCccEEEeecccccCC-CC-chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHH-H
Q 000324 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLG-E 1519 (1665)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~-g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~-~ 1519 (1665)
|||+++.++..+ ....+++++++|+||||.|++ .+ +|.++.++.++... -....|.++||||++.. ..++ .
T Consensus 208 aTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~---~~~~~qt~mFSAtfp~~iq~l~~~ 282 (482)
T KOG0335|consen 208 ATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP---PKNNRQTLLFSATFPKEIQRLAAD 282 (482)
T ss_pred ecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCC---CccceeEEEEeccCChhhhhhHHH
Confidence 999999999886 667899999999999999988 44 44444444332211 01478999999999873 2233 2
Q ss_pred HhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC----hhHHHHHHHHhc---CCC-----CEEEEeCchHHH
Q 000324 1520 WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT----KPTFTAIVQHAK---NEK-----PALVFVPSRKYV 1587 (1665)
Q Consensus 1520 wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~----k~~~~~i~~~l~---~~~-----~~IVFv~sr~~a 1587 (1665)
++... |+ -+.+...+-...+..+....+. +..+..++.... ... .++|||.|++.|
T Consensus 283 fl~~~----yi--------~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~ 350 (482)
T KOG0335|consen 283 FLKDN----YI--------FLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGA 350 (482)
T ss_pred Hhhcc----ce--------EEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchh
Confidence 33211 11 1222222222222222222221 111222222111 122 599999999999
Q ss_pred HHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1588 RLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1588 ~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++..|. ..++....+||.-++.+|...+++|++|++.||||
T Consensus 351 d~l~~~l~-----------------------------------~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVa 393 (482)
T KOG0335|consen 351 DELAAFLS-----------------------------------SNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVA 393 (482)
T ss_pred hHHHHHHh-----------------------------------cCCCCceeecchhhhhHHHHHHHHhhcCCcceEEE
Confidence 99998873 24556789999999999999999999999999998
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=309.62 Aligned_cols=304 Identities=22% Similarity=0.215 Sum_probs=203.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
|+ .|+++|..+++.++.+ ++++++||||+|||.. .++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f-~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTF-GLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHH-HHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 56 8999999999999877 5599999999999964 4444444332 24589999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccH---h-h-----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-----
Q 000324 572 NRLQMYDVKVRELSGDQTLTR---Q-Q-----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD----- 637 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~---~-~-----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d----- 637 (1665)
......++.+..++|+..... . . ...++|+|+||+++...... .....+++||+||||.+.+
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888888765321 1 1 13589999999986433331 2345599999999999875
Q ss_pred -------CCc-hHHHHHHHHHHH----------------HHhh-ccCCeeEEEEcccCCChHHHH-HHHhccccCceEEe
Q 000324 638 -------NRG-PVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (1665)
Q Consensus 638 -------~rg-~~le~iv~r~~~----------------~~~~-~~~~~riV~lSATl~n~~dv~-~~l~~~~~~~~~~f 691 (1665)
++. ..++.++..+.. .+.. .....|++++|||++.. .+. .+++... .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~ll---~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFRELL---GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhccc---eEEe
Confidence 221 344444433311 0000 12267899999999742 121 1222110 1111
Q ss_pred cCC-CccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhH---HHHHHHHHHHHhhhcccccccc
Q 000324 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
... ...-.+.+.++... .+...+.. +.... +.++||||++++. +..++..|...+.
T Consensus 297 ~~~~~~~rnI~~~yi~~~-----~k~~~L~~-----ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi--------- 356 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE-----DSVEKLVE-----LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGI--------- 356 (1176)
T ss_pred cCcccccCCceEEEEEcc-----cHHHHHHH-----HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCC---------
Confidence 111 11122344444322 11122221 22222 4689999999888 9999998887653
Q ss_pred ccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEe----ccccccccCCCc-eEEE
Q 000324 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (1665)
.++.+||+| +| .++.|++|+++|||| |++++||||+|+ +++|
T Consensus 357 ----------------------------~v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 357 ----------------------------NAELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred ----------------------------cEEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 356679999 22 349999999999999 689999999999 8999
Q ss_pred EecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 843 I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 99 8888644322234568999999863
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=298.18 Aligned_cols=336 Identities=22% Similarity=0.311 Sum_probs=220.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.-+++++|.+++..++.+ |+|+++|||+|||.+|.+++...+.. .+.++|||+|+++|+.|+.+.+++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 347899999999988876 79999999999999999998887732 144899999999999999999998
Q ss_pred hhccCCcEEEEEECCCcccHh--hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~ 650 (1665)
.+...+.++..++|+...... ...+.+|+|+||+.+...... ....+..+++|||||||++....+ +..+..+.
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~ 156 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAERY 156 (773)
T ss_pred HhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHHH
Confidence 776445688899998765432 345789999999986322211 123567899999999999865322 22232222
Q ss_pred HHHHhhccCCeeEEEEcccCCC-hHHHHHHHhccccCceEEecCCCcc----c--cceEEEEeeecCchh----------
Q 000324 651 VRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPL---------- 713 (1665)
Q Consensus 651 ~~~~~~~~~~~riV~lSATl~n-~~dv~~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~---------- 713 (1665)
.......+++|||||... ...+...+..-. ...+.+.+.+.+ . +....++.+......
T Consensus 157 ----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~-i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~ 231 (773)
T PRK13766 157 ----HEDAKNPLVLGLTASPGSDEEKIKEVCENLG-IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEA 231 (773)
T ss_pred ----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCC-ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHH
Confidence 223456789999999642 333333322110 001111111110 0 000000000000000
Q ss_pred ------------------------------HH------------HH----------------------------------
Q 000324 714 ------------------------------QR------------FQ---------------------------------- 717 (1665)
Q Consensus 714 ------------------------------~~------------~~---------------------------------- 717 (1665)
.. +.
T Consensus 232 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 232 LKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 00 00
Q ss_pred -----------------------HH---H---------HHHHHHHHH---HhCCCeEEEEecChhHHHHHHHHHHHHhhh
Q 000324 718 -----------------------LM---N---------DLCYEKVVA---VAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (1665)
Q Consensus 718 -----------------------~~---~---------~~~~~~i~~---~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1665)
.+ . ..+.+.+.+ ..+++++||||++++.|..++..|...+..
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~ 391 (773)
T PRK13766 312 EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391 (773)
T ss_pred hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 00 0 000001111 134679999999999999999998654432
Q ss_pred ccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCce
Q 000324 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (1665)
Q Consensus 760 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (1665)
...+ .. .+-.--|+||++.+|..+++.|++|.++|||||+++++|+|+|++
T Consensus 392 ~~~~---~g--------------------------~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 392 AVRF---VG--------------------------QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred eEEE---Ec--------------------------cccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 2110 00 000001567999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH
Q 000324 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 840 ~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
++||+ ||++. +...|+||+||+||.| .|.+++++.....
T Consensus 443 ~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ 481 (773)
T PRK13766 443 DLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGTR 481 (773)
T ss_pred CEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCCh
Confidence 99999 88875 8889999999999975 4888888876543
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=277.82 Aligned_cols=319 Identities=17% Similarity=0.145 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|..+++.++.+. |..+.||+|||++|.+|++..... +..+++++||+.||.|.++.+...+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 67899999999998775 999999999999999999987543 4579999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC----------------------CCccccceeEEEE
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG----------------------DRTYTQLVKLLII 629 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~----------------------~~~~l~~v~liIi 629 (1665)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|..+.. .......+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999764332 345899999999985 55543321 1123355788999
Q ss_pred ecccccc-cC-C----------ch---HHHHHHHHHHHHHhh--------------------------------------
Q 000324 630 DEIHLLH-DN-R----------GP---VLESIVARTVRQIET-------------------------------------- 656 (1665)
Q Consensus 630 DEaH~l~-d~-r----------g~---~le~iv~r~~~~~~~-------------------------------------- 656 (1665)
||||.+. |+ + .. .+-..+.++.+.+..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999652 11 1 11 000000111000000
Q ss_pred -----------------------------------c-----------------------------------------cCC
Q 000324 657 -----------------------------------T-----------------------------------------KEH 660 (1665)
Q Consensus 657 -----------------------------------~-----------------------------------------~~~ 660 (1665)
+ ...
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 001
Q ss_pred eeEEEEcccCCCh-HHHHHHHhccccCceEEecCCCccccceE--EEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeE
Q 000324 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQV 736 (1665)
Q Consensus 661 ~riV~lSATl~n~-~dv~~~l~~~~~~~~~~f~~~~rpv~l~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~v 736 (1665)
.++.|||||++.. +++..+.+.++ ..-+..+|..... .++..+ ...+...+... +.. +..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~v-----v~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPV-----VRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCe-----EEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 2678888888752 24444444432 2234444442111 112111 22233333332 222 2235789
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
||||+|++.++.++..|...+.. +..+||.+...++..+ .|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~ii--~~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAIV--AR 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHHH--HH
Confidence 99999999999999999876532 4566998765555544 45
Q ss_pred hCCCCCeEEeccccccccCCC---ceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
+.+...|+|||++++||+|+| ++. +||+ |+.+. |...|.||+|||||.| ..|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555567999999999999999 665 8998 88876 7889999999999988 78999999887
Q ss_pred Cc
Q 000324 889 SE 890 (1665)
Q Consensus 889 ~~ 890 (1665)
++
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 54
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=280.86 Aligned_cols=293 Identities=28% Similarity=0.493 Sum_probs=228.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.+-++|++||-++..|. +|+|.|+|.+|||++|+.||.-.-.. .. |++|-+|.++|-+|.+++|+..|+.
T Consensus 297 elD~FQk~Ai~~lerg~-SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF~D---- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGD-SVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETFGD---- 366 (1248)
T ss_pred CccHHHHHHHHHHHcCC-eEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhccc----
Confidence 68899999999988755 49999999999999999998743322 33 9999999999999999999999985
Q ss_pred EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhcC
Q 000324 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~~ 1499 (1665)
|+.+||+.... ..+.++|.|.|.|-+++.+ +...++++.+||+||+|-+.+ ++|.+||.++= .+|
T Consensus 367 -vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP 432 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLP 432 (1248)
T ss_pred -cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeee-------ecc
Confidence 55899987655 6789999999999998876 566788999999999999988 67999988762 468
Q ss_pred CCCeEEEEcccCCChHHHHHHhcccCC-cEEecCCCCCccceEEEEeecccc-----------------hhhHH-----H
Q 000324 1500 NKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDIT-----------------NFEAR-----M 1556 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~~dl~~wl~~~~~-~~~~f~~~~rpv~l~i~i~~~~~~-----------------~~~~~-----~ 1556 (1665)
..+++|+||||+||..++|.|+|..+. .++..+...||||++..+..-..- +..+. .
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 999999999999999999999999875 466677779999999877321000 00000 0
Q ss_pred H------------------------------h--c-Ch--hHHHHHHHHhc--CCCCEEEEeCchHHHHHHHHHHHHhcc
Q 000324 1557 Q------------------------------A--M-TK--PTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSS 1599 (1665)
Q Consensus 1557 ~------------------------------~--~-~k--~~~~~i~~~l~--~~~~~IVFv~sr~~a~~la~~L~~~~~ 1599 (1665)
. . - .+ +.+..++.++. ..-|+||||-||+.|+..|+.|.....
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0 0 0 01 24555555543 345899999999999999999976555
Q ss_pred cCCCcccccccCCcccchhhHh----hhh--H------HHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1600 MDGDQKSAFLLWPAEEVEPFID----NIQ--E------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~----~i~--d------~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++.++ +++.-+++ +++ | -.+++.+..|+++||||+-+--+..|+.+|..|-++||++
T Consensus 593 ~~~~EK--------seV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFA 662 (1248)
T KOG0947|consen 593 TDSKEK--------SEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFA 662 (1248)
T ss_pred ccchhH--------HHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEee
Confidence 443332 23333333 232 2 2456788899999999999999999999999999999984
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=257.78 Aligned_cols=298 Identities=17% Similarity=0.233 Sum_probs=219.6
Q ss_pred CCCCCCCCCCCcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHc-CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCC
Q 000324 1312 PPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389 (1665)
Q Consensus 1312 ~~t~ll~l~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~-~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~ 1389 (1665)
|.+|+.....+.--.|++++++++|. +|..|+.||..|+|.++. ...|.|.++..|+|||.||.|.+|.+.... ..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--~~ 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--VV 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--cc
Confidence 56777777777778899999999998 999999999999999886 557999999999999999999999888764 33
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEE
Q 000324 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (1665)
Q Consensus 1390 ~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llV 1469 (1665)
.|++++|+|+||||.|+.+.+. ..|+..++++....-+........-..+|+|+||+.+.++..+++ ...++.++.+|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEE
Confidence 4599999999999999999998 788877777666555442221111234899999999988877643 45688999999
Q ss_pred eecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeecc
Q 000324 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (1665)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~ 1548 (1665)
+||||.+.+..| +-..-..|...++++.|+++||||+.... .++.-+-..+ .++.+.-....
T Consensus 238 lDEAD~Mi~tqG-----~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~------------n~i~Lk~eel~ 300 (477)
T KOG0332|consen 238 LDEADVMIDTQG-----FQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNA------------NVIILKREELA 300 (477)
T ss_pred ecchhhhhhccc-----ccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCC------------ceeeeehhhcc
Confidence 999998877543 22222223344578999999999997743 4444442222 12222222222
Q ss_pred cchhhHHHHhc--ChhHHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhh
Q 000324 1549 ITNFEARMQAM--TKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (1665)
Q Consensus 1549 ~~~~~~~~~~~--~k~~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (1665)
...+.+.+... ....|+.+.... ..-+++||||.|++.|.+++..|
T Consensus 301 L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m------------------------------ 350 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEM------------------------------ 350 (477)
T ss_pred ccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHH------------------------------
Confidence 22222222111 223444444421 34478999999999999999888
Q ss_pred HHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1625 d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...++.|..+||+|...+|..+++.|+.|.-+|||.
T Consensus 351 -----~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 351 -----RAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred -----HhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 346788999999999999999999999999999983
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=291.49 Aligned_cols=268 Identities=21% Similarity=0.304 Sum_probs=199.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1331 ~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
.++..| ||.+|+|+|.++++.+++|++ ++++||||+|||+||++|++. ..+ .++||+|+++|+.|++..+
T Consensus 4 ~l~~~f-g~~~fr~~Q~~~i~~il~g~d-vlv~~PTG~GKTl~y~lpal~------~~g--~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTF-GYDDFRPGQEEIISHVLDGRD-VLVVMPTGGGKSLCYQVPALL------LKG--LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHhHHHHHHHHH------cCC--cEEEEcCCHHHHHHHHHHH
Confidence 445555 499999999999999999875 999999999999999999983 233 7999999999999999988
Q ss_pred HHHhcCCCCcEEEEEeCCCccchh-------ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchh
Q 000324 1411 EIKFGQGLGMRVVELTGETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (1665)
Q Consensus 1411 ~~~~~~~~~i~v~~l~G~~~~~~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~ 1483 (1665)
+. + |+.+..++|+.+.+.. .....+|+++||+++... .|.......++++|||||||++. .+|..
T Consensus 74 ~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~-~~g~~ 145 (591)
T TIGR01389 74 RA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVS-QWGHD 145 (591)
T ss_pred HH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCcccc-cccCc
Confidence 83 3 5788889988765521 113458999999998532 22233445789999999999996 45677
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcCh
Q 000324 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (1665)
Q Consensus 1484 ~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k 1561 (1665)
++..+.++..+...++. .++++||||.+.. .++..|++......+. .+..|| .+...+.... . ...
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-nl~~~v~~~~--~-------~~~ 213 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRP-NLRFSVVKKN--N-------KQK 213 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCC-CcEEEEEeCC--C-------HHH
Confidence 77777888777766654 4499999998763 5799999876655443 333344 2222221110 0 001
Q ss_pred hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcC
Q 000324 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (1665)
Q Consensus 1562 ~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~ 1641 (1665)
.....+.. ..+.++||||+|++.|+.++..|. ..+..++.|||
T Consensus 214 ~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~-----------------------------------~~g~~~~~~H~ 256 (591)
T TIGR01389 214 FLLDYLKK--HRGQSGIIYASSRKKVEELAERLE-----------------------------------SQGISALAYHA 256 (591)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHH-----------------------------------hCCCCEEEEEC
Confidence 12222222 235789999999999999998772 23556899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|+..+|..+++.|.+|.++||||
T Consensus 257 ~l~~~~R~~i~~~F~~g~~~vlVa 280 (591)
T TIGR01389 257 GLSNKVRAENQEDFLYDDVKVMVA 280 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999999997
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=282.55 Aligned_cols=319 Identities=16% Similarity=0.205 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
..|+|+|.+++..++..+ .+.++++|||+|||++++.++.. + +.++|||||+..|+.|+.++|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 478999999999988654 47899999999999999766543 2 1259999999999999999999
Q ss_pred HhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCC----Cccc--cceeEEEEecccccccCCchHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~----~~~l--~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
+++......+..++|+.... ......|+|+|+..+....++... ...+ ..+++||+||||++.. +.+..
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~ 394 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRR 394 (732)
T ss_pred HhcCCCCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHH
Confidence 87643346788888865322 123478999999854322111100 0112 3578999999998842 33333
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChH----HHHHHHhccccCceEEec-------CCCccccceEEEEeeecC----
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPNYE----DVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVK---- 710 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n~~----dv~~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~---- 710 (1665)
++.. .. ....+|||||+...+ ++...++- .++... .-.-++......+..+..
T Consensus 395 il~~-------l~-a~~RLGLTATP~ReD~~~~~L~~LiGP----~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 395 VLTI-------VQ-AHCKLGLTATLVREDDKITDLNFLIGP----KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred HHHh-------cC-cCcEEEEeecCcccCCchhhhhhhcCC----eeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 3322 22 234699999976322 22222221 111110 001111111111111110
Q ss_pred ------chhHHHHHHHHHHHH---HHHH-H-hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHh
Q 000324 711 ------KPLQRFQLMNDLCYE---KVVA-V-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (1665)
Q Consensus 711 ------~~~~~~~~~~~~~~~---~i~~-~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~ 779 (1665)
.....+..++..-+. .++. + ..+.++||||.+...+..++..|
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------- 516 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------- 516 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------
Confidence 000111122211111 1222 2 24679999999988776666544
Q ss_pred hhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCC-CCCeEEeccccccccCCCceEEEEecccccCCCCCCccc
Q 000324 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858 (1665)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g-~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~ 858 (1665)
|+.+.||+++..+|..+++.|++| .+++||+|.++.+|||+|++++||+ ++++.|
T Consensus 517 ----------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g---- 572 (732)
T TIGR00603 517 ----------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG---- 572 (732)
T ss_pred ----------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC----
Confidence 124469999999999999999865 8899999999999999999999999 776644
Q ss_pred CCHHHHHhhhcccCCCCCCCc-----eEEEEEeCCCcHHHH
Q 000324 859 LSPLDIMQMLGRAGRPQYDSY-----GEGIIITGHSELRYY 894 (1665)
Q Consensus 859 ~s~~~~~Qr~GRAGR~g~d~~-----G~~iil~~~~~~~~y 894 (1665)
|..+|+||+||++|++.++. ...|.+++.+..+.+
T Consensus 573 -S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 573 -SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred -CHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 88999999999999984432 233777777665544
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=251.73 Aligned_cols=330 Identities=20% Similarity=0.291 Sum_probs=241.8
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHH
Q 000324 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1665)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (1665)
+.++..|. .+.|+|.|..++...+.+.+ +++..|||.||++||.||.|-. +.-+++|+|..+|+
T Consensus 84 ~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a--------------dg~alvi~plislm 147 (695)
T KOG0353|consen 84 DILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA--------------DGFALVICPLISLM 147 (695)
T ss_pred HHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc--------------CCceEeechhHHHH
Confidence 34555553 67899999999999988866 8888999999999999998853 33689999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEECCCcccHhh---------hccccEEEeChhhH---HHHHhhcCCCccccceeEEEEec
Q 000324 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 564 ~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---------~~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~liIiDE 631 (1665)
..+.-.++. +|+....+...++..... -.+..+|+.|||++ ..+..+.........+++|-|||
T Consensus 148 edqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 988777665 477777666655543321 12567999999996 22222221112345689999999
Q ss_pred cccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHHHHHHhccccCceEEecCCCccccceEEEEe
Q 000324 632 IHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706 (1665)
Q Consensus 632 aH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~ 706 (1665)
+|+... ++.|.+..+ .-+.| .-++..++||+||.+| ..|+...|+.. ..|.|...|....+...+..
T Consensus 224 vhccsqwghdfr~dy~~l-~ilkr----qf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~q 295 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKAL-GILKR----QFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQ 295 (695)
T ss_pred eeehhhhCcccCcchHHH-HHHHH----hCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeee
Confidence 999864 466776543 22222 3568899999999887 56777888764 36777777765555433322
Q ss_pred eecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhcccc
Q 000324 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (1665)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 786 (1665)
-+. +...-.. -+...+.....+...||||-|+++|++++..|...++..
T Consensus 296 kp~-n~dd~~e----di~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a-------------------------- 344 (695)
T KOG0353|consen 296 KPG-NEDDCIE----DIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA-------------------------- 344 (695)
T ss_pred CCC-ChHHHHH----HHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc--------------------------
Confidence 111 1111111 122223333446688999999999999999999876543
Q ss_pred chhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 787 ~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
+.+|+.|.+.||.-+-+.+..|+++|+|||-++++|||-|++++||+ .+.++ |+..|.|
T Consensus 345 -----------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyq 403 (695)
T KOG0353|consen 345 -----------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQ 403 (695)
T ss_pred -----------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHH
Confidence 44699999999999999999999999999999999999999999999 66666 8888999
Q ss_pred -------------------------------------------hhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 867 -------------------------------------------MLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 867 -------------------------------------------r~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
..|||||.+ ....||+++.-.+.-...
T Consensus 404 asarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 404 ASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADIFKIS 473 (695)
T ss_pred HHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHHHhHH
Confidence 789999976 678899988766554433
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=282.05 Aligned_cols=324 Identities=19% Similarity=0.211 Sum_probs=217.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
|+ .++++|..+...+..+ -|+.+.||+|||++|.+|++..... +..+.+++|++.||.|.+..+.
T Consensus 76 g~-~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~-----------G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE-----------GKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred CC-CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc-----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 44 7889999998866544 3999999999999999999865543 3469999999999999999999
Q ss_pred HhhccCCcEEEEEECCCc-cc-HhhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEecccccc-c-CCch-
Q 000324 572 NRLQMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-D-NRGP- 641 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~-~~-~~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~-d-~rg~- 641 (1665)
..+..+|++|+.++|+.+ .. ++....++|+|+||+.+ |.+..+.. ....+..+.++||||||.+. | .+.|
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999987 22 33446799999999996 66655431 22356788999999999763 2 1222
Q ss_pred ----------HHHHHHHHHHHHHhhc-----cCCe---------------------------------------------
Q 000324 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (1665)
Q Consensus 642 ----------~le~iv~r~~~~~~~~-----~~~~--------------------------------------------- 661 (1665)
.+-.++.++...+... ....
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1111222222111100 0011
Q ss_pred ----------------------------------------------------------------eEEEEcccCCChHHHH
Q 000324 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (1665)
Q Consensus 662 ----------------------------------------------------------------riV~lSATl~n~~dv~ 677 (1665)
++.|||.|....+ .
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~--~ 378 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE--K 378 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH--H
Confidence 2333333322100 1
Q ss_pred HHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHH
Q 000324 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (1665)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (1665)
+|.... .-.+ ..-|..+|+.....--.+.. ....+..++. +.+.. +..+.|+||||+|++.+..++..|...
T Consensus 379 e~~~~Y-~l~v-~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~----~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVY-NMEV-VQIPTNRPIIRIDYPDKVFV-TLDEKYKAVI----EEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHh-CCcE-EECCCCCCcccccCCCeEEc-CHHHHHHHHH----HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 111111 0011 12233334322110000000 1112222222 22222 234789999999999999999999876
Q ss_pred hhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCC
Q 000324 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (1665)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (1665)
+.. +..+||.+.+.++..+...+..| +|+|||+.++||+|+
T Consensus 452 gi~-------------------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI 492 (790)
T PRK09200 452 GIP-------------------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDI 492 (790)
T ss_pred CCC-------------------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCC
Confidence 432 45679999999998888887776 799999999999999
Q ss_pred ---CceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 837 ---PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 837 ---P~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
|++. +||+ |+.+. |...|.||+|||||.| ..|.++.+++..+
T Consensus 493 ~l~~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 493 KLGEGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CcccccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 7998 9999 88776 8889999999999988 8899999888644
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=255.47 Aligned_cols=440 Identities=17% Similarity=0.206 Sum_probs=287.3
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCC
Q 000324 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (1665)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~g 578 (1665)
-|+.-|...+..+..++++|.||||||.......+.....+. ..+.+..|.|--|.+++.++... ++
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVadE---MD 116 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVADE---MD 116 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHHH---hc
Confidence 467778888999998999999999999877766666554432 24889999999999999998774 45
Q ss_pred cEEEEEECCC-cccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhc
Q 000324 579 VKVRELSGDQ-TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (1665)
Q Consensus 579 i~V~~ltGd~-~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (1665)
+..+.-.|-. .+.+....++-+-+||.+ +++|.......+..+++||+|||| +|.-..+.++.-+...+ ..
T Consensus 117 v~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~-~~ 188 (699)
T KOG0925|consen 117 VTLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVV-RN 188 (699)
T ss_pred cccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHH-hh
Confidence 6666555532 222222233445567777 778887777889999999999999 44444444444333333 33
Q ss_pred cCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEE
Q 000324 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (1665)
Q Consensus 658 ~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vL 737 (1665)
.++.++|.+|||+ ....+..|++..| +..+.+ ..|+.+ .| ........+.+....+++... ....+.++
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~P---ll~vpg-~~PvEi--~Y---t~e~erDylEaairtV~qih~-~ee~GDil 257 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNAP---LLAVPG-THPVEI--FY---TPEPERDYLEAAIRTVLQIHM-CEEPGDIL 257 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCCC---eeecCC-CCceEE--Ee---cCCCChhHHHHHHHHHHHHHh-ccCCCCEE
Confidence 5799999999998 5678888887654 444444 344433 22 222233445555555554332 23378999
Q ss_pred EEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHh
Q 000324 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (1665)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~ 817 (1665)
||..+..+.+..++.+.....+.. .+..+..|..+| +.++..+++...
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~----------------------------~~~g~l~v~PLy----P~~qq~iFep~p 305 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLG----------------------------PQVGPLKVVPLY----PAQQQRIFEPAP 305 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhc----------------------------cccCCceEEecC----chhhccccCCCC
Confidence 999999999999988875432211 112233455556 334444444332
Q ss_pred C---C--CCCeEEeccccccccCCCceEEEEec----ccccCCCCC----CcccCCHHHHHhhhcccCCCCCCCceEEEE
Q 000324 818 D---G--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (1665)
Q Consensus 818 ~---g--~i~VLVaT~tla~GVdlP~v~vVI~~----t~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (1665)
. | ..+|+|+|++++..+.++++.+||+- .++|+|... -..++|..+..||.|||||. ..|.|+.
T Consensus 306 ~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfr 382 (699)
T KOG0925|consen 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFR 382 (699)
T ss_pred cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEE
Confidence 1 2 35899999999999999999999983 678998753 23689999999999999996 6899999
Q ss_pred EeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhH
Q 000324 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (1665)
Q Consensus 885 l~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (1665)
+++.+- |.+-+..+ ...+.++.+|.+-+..-.-..+ .++-.+. +.+.|.
T Consensus 383 LYte~~---~~~em~~~-----typeilrsNL~s~VL~LKklgI-----------------~dlvhfd-----fmDpPA- 431 (699)
T KOG0925|consen 383 LYTEEA---FEKEMQPQ-----TYPEILRSNLSSTVLQLKKLGI-----------------DDLVHFD-----FMDPPA- 431 (699)
T ss_pred eecHHh---hhhcCCCC-----CcHHHHHHhhHHHHHHHHhcCc-----------------ccccCCc-----CCCCCC-
Confidence 998643 22212111 1112233333222211110111 1111111 111121
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcC
Q 000324 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (1665)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~ 1044 (1665)
-+....|++.|.-.+++..| | .+|++|.+||.|+++|..+++++.+....|+ .++|.|-++-+- .+..+
T Consensus 432 ----PEtLMrALE~LnYLaaLdDd---G--nLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAMLsv-PncFv 500 (699)
T KOG0925|consen 432 ----PETLMRALEVLNYLAALDDD---G--NLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAMLSV-PNCFV 500 (699)
T ss_pred ----hHHHHHHHHHhhhhhhhCCC---c--ccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhcccC-Ccccc
Confidence 13345677777777776544 4 7899999999999999999999999988887 678876665332 45567
Q ss_pred Chh
Q 000324 1045 RQD 1047 (1665)
Q Consensus 1045 R~~ 1047 (1665)
|..
T Consensus 501 Rp~ 503 (699)
T KOG0925|consen 501 RPT 503 (699)
T ss_pred CCC
Confidence 765
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-27 Score=247.19 Aligned_cols=328 Identities=22% Similarity=0.300 Sum_probs=232.0
Q ss_pred CCCCCccccCCCceEEecCCCCCCCCCCCCCccccCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCc
Q 000324 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523 (1665)
Q Consensus 445 lp~g~~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsG 523 (1665)
.|.|..+..+.+|-.||-......- --|+.++... .||++|+.+|.+|+|.++.+-+ ++..|..|.|
T Consensus 24 ~~~~~~~d~kgsyv~ihssgfrdfl-----------lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmg 91 (387)
T KOG0329|consen 24 APAGPKKDKKGSYVSIHSSGFRDFL-----------LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMG 91 (387)
T ss_pred CCCCccccccCcEEEEeccchhhhh-----------cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCC
Confidence 3455555556668887765432111 1144555544 7999999999999999999877 9999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC-CcEEEEEECCCcccHhh---hcccc
Q 000324 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQ 599 (1665)
Q Consensus 524 KT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~ 599 (1665)
||.+|.|+-|+.+..- + +...+++++.||+||-|+..++.++.+.+ +++|..+.|+..+.+.. .+-++
T Consensus 92 ktavfvl~tlqqiepv---~-----g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~Ph 163 (387)
T KOG0329|consen 92 KTAVFVLATLQQIEPV---D-----GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPH 163 (387)
T ss_pred ceeeeehhhhhhcCCC---C-----CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCe
Confidence 9999999999988643 1 25679999999999999988776655533 79999999999876542 24679
Q ss_pred EEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc---CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCC-hHH
Q 000324 600 IIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YED 675 (1665)
Q Consensus 600 IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n-~~d 675 (1665)
|+|+||+++..+.|... ..+++++.+|+|||+.+.+ .|..+-| +...++...|++.+|||+++ ..-
T Consensus 164 ivVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle~lDMrRDvQE--------ifr~tp~~KQvmmfsatlskeiRp 233 (387)
T KOG0329|consen 164 IVVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLEQLDMRRDVQE--------IFRMTPHEKQVMMFSATLSKEIRP 233 (387)
T ss_pred EEEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHHHHHHHHHHHH--------HhhcCcccceeeeeeeecchhhHH
Confidence 99999999988888765 5789999999999998754 2322222 23347888999999999985 223
Q ss_pred HHHHHhccccCceEEecC-CCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHH
Q 000324 676 VALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754 (1665)
Q Consensus 676 v~~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (1665)
+..-+..+|- .+|.-+. ...---++|+|+...+....+++.. ++....-+|++|||.|....
T Consensus 234 vC~kFmQdPm-Ei~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d--------LLd~LeFNQVvIFvKsv~Rl-------- 296 (387)
T KOG0329|consen 234 VCHKFMQDPM-EIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND--------LLDVLEFNQVVIFVKSVQRL-------- 296 (387)
T ss_pred HHHhhhcCch-hhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh--------hhhhhhhcceeEeeehhhhh--------
Confidence 3332222221 1111111 1112235556655554433333222 22333467999999775430
Q ss_pred HHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecccccccc
Q 000324 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (1665)
Q Consensus 755 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GV 834 (1665)
+ | ..+ ||||+.++||+
T Consensus 297 --------------------------------------------------~----------f---~kr-~vat~lfgrgm 312 (387)
T KOG0329|consen 297 --------------------------------------------------S----------F---QKR-LVATDLFGRGM 312 (387)
T ss_pred --------------------------------------------------h----------h---hhh-hHHhhhhcccc
Confidence 0 2 123 89999999999
Q ss_pred CCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHH
Q 000324 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 835 dlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
|+-.+..||+ ||.|. +..+|+||+|||||-| +.|.+|.+.+..+....+
T Consensus 313 diervNi~~N----Ydmp~------~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 313 DIERVNIVFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred Ccccceeeec----cCCCC------CchHHHHHhhhhhccc--cccceeehhcchhhHHHh
Confidence 9999999999 88887 7789999999999977 999999999886655443
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=276.53 Aligned_cols=347 Identities=16% Similarity=0.177 Sum_probs=220.2
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000324 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (1665)
++|+|.+++..+..... .++.++||+|||++|.+|++..... +..++|++|++.||.|.++.+...+.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 45555556655444434 6999999999999999998765543 23599999999999999999999989
Q ss_pred cCCcEEEEEECCCc---cc---HhhhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEecccccc-cC-Cch-
Q 000324 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (1665)
Q Consensus 576 ~~gi~V~~ltGd~~---~~---~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d~-rg~- 641 (1665)
.+|++|+..+++.. .. ++....++|+++||+.+ |.+..+. .....+..+.++|+||||.++ |+ |-|
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999999887632 22 22345899999999997 5553331 122356789999999999873 21 211
Q ss_pred ----------HHHHHHHHHHHHHhhc-----cCCe---------------------------------------------
Q 000324 642 ----------VLESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (1665)
Q Consensus 642 ----------~le~iv~r~~~~~~~~-----~~~~--------------------------------------------- 661 (1665)
.+-..+.++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 1111111121111000 0011
Q ss_pred ----------------------------------------------------------------eEEEEcccCCChHHHH
Q 000324 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (1665)
Q Consensus 662 ----------------------------------------------------------------riV~lSATl~n~~dv~ 677 (1665)
++.|||.|... .-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~--~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKV--AEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChh--HHH
Confidence 33444444321 112
Q ss_pred HHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHH
Q 000324 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (1665)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (1665)
+|.... .--+..-|..+|+.....--.+.. ....++.++.. .+.+ +..+.|+||||+|+..++.++..|...
T Consensus 375 Ef~~iY--~l~v~~IPt~kp~~r~d~~d~i~~-~~~~K~~ai~~----~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 375 EFIETY--SLSVVKIPTNKPIIRIDYPDKIYA-TLPEKLMATLE----DVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHh--CCCEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHH----HHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 222211 001122333444322211000000 11223333322 2222 244789999999999999999999876
Q ss_pred hhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCC
Q 000324 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (1665)
Q Consensus 757 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (1665)
+.. +.++||.+.+.+|..+...++.| +|+|||+.++||+|+
T Consensus 448 gi~-------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI 488 (762)
T TIGR03714 448 GIP-------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDI 488 (762)
T ss_pred CCC-------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCC
Confidence 532 45569999999998888877777 799999999999999
Q ss_pred C---------ceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHH----------HHHHh
Q 000324 837 P---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----------YYLSL 897 (1665)
Q Consensus 837 P---------~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~----------~y~~l 897 (1665)
| ++.|||+ |++++ ...+ .||+|||||.| .+|.++.+++.++.- .+...
T Consensus 489 ~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD~l~~~~~~~~~~~~~~~ 555 (762)
T TIGR03714 489 KLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLEDDLIKRWSPSWLKKYYKK 555 (762)
T ss_pred CCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccchhhhhhcchHHHHHHHHH
Confidence 9 9999999 88886 3445 99999999988 889999988875421 12222
Q ss_pred hc--C----CCccccchhHhhHHH
Q 000324 898 MN--Q----QLPIESQFVSKLADQ 915 (1665)
Q Consensus 898 l~--~----~~piES~l~~~l~d~ 915 (1665)
+. + ..||++.+.....++
T Consensus 556 ~~~~~~~~~~~~i~~~~~~~~i~~ 579 (762)
T TIGR03714 556 YSVKDSKLKPSALFKRRFRKIVEK 579 (762)
T ss_pred cCCCcccccCcccccHHHHHHHHH
Confidence 21 1 267888876655444
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=261.86 Aligned_cols=312 Identities=18% Similarity=0.189 Sum_probs=200.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
+|..||.+|+|+||.+++++| ++|.|+||||||++|++|+++.+.... ...|+-+||||||||||.|+|+.+++.
T Consensus 156 ~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 156 KISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 599999999999999999888 999999999999999999999998743 233579999999999999999999965
Q ss_pred hcCCCCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHH
Q 000324 1414 FGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVS 1489 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~s 1489 (1665)
+....=+--+.+.||.... .++.++.+|+|+||||+.+++.+... ..+++++++|+||+|+|++.+ +..+..++.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-IKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch-heeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 5544323345555654433 45667779999999999999886443 356789999999999999855 667777776
Q ss_pred HHHHHHhh------cCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEec-------CCCC------CccceEEEEeeccc
Q 000324 1490 RMRYIASQ------VENKIRIVALSTSLANA-KDLGEWIGATSHGLFNF-------PPGV------RPVPLEIHIQGVDI 1549 (1665)
Q Consensus 1490 rl~~i~~~------~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f-------~~~~------rpv~l~i~i~~~~~ 1549 (1665)
.+..+... ++...|-+++||||.+. ..++..--..+ -++.. .|.. .++|-.-.+..+.+
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccC
Confidence 66443222 22347889999999874 24443211111 11110 0000 11110000111222
Q ss_pred chh-hHHHHhc-Chh---HHHH-HHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHh
Q 000324 1550 TNF-EARMQAM-TKP---TFTA-IVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFID 1621 (1665)
Q Consensus 1550 ~~~-~~~~~~~-~k~---~~~~-i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~ 1621 (1665)
+.. .+++..+ .+- .+.+ +...+ ....++|||+++...++--+..|......+....++ ....+.+-+
T Consensus 393 PeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~--~~~s~g~~~--- 467 (708)
T KOG0348|consen 393 PEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG--APDSEGLPP--- 467 (708)
T ss_pred cHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC--CcccCCChh---
Confidence 211 1111111 011 1111 11111 344579999999999988777775544332111000 000111111
Q ss_pred hhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1622 NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1622 ~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
-.....+--+||+|++++|..+++.|+.-.--||+|
T Consensus 468 --------l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLc 503 (708)
T KOG0348|consen 468 --------LFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLC 503 (708)
T ss_pred --------hhhcceEEEecCchhHHHHHHHHHhhccccceEEEe
Confidence 123445788999999999999999999988889998
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=256.84 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=208.9
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccHHHH
Q 000324 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1329 ~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~PtreLa 1403 (1665)
.++++++.. ||.+|+|||+||+|.++.|.| ++.+|.||+|||++|++|-+-|+...+ ...+|.+|+++||++|+
T Consensus 229 pevmenIkK~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLa 307 (629)
T KOG0336|consen 229 PEVMENIKKTGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELA 307 (629)
T ss_pred HHHHHHHHhccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHH
Confidence 367888877 899999999999999999988 999999999999999999988776532 34457999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
.|+.-..+ ++.- -|.+.++++|+.+.+.+ +-++.+||++||++|.++... ...++.++.++|+||||.|++++
T Consensus 308 lqie~e~~-kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 308 LQIEGEVK-KYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHhHHh-Hhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc
Confidence 99988877 4443 36677777777666532 345669999999999998765 66789999999999999999987
Q ss_pred chhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhc
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~ 1559 (1665)
|-..++.|.-...++.|+++.|||.|. .+.++.-.-..+..+++ .+..-+.....-+.+-.++-....
T Consensus 384 ------FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~v--GsLdL~a~~sVkQ~i~v~~d~~k~--- 452 (629)
T KOG0336|consen 384 ------FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYV--GSLDLVAVKSVKQNIIVTTDSEKL--- 452 (629)
T ss_pred ------ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEe--cccceeeeeeeeeeEEecccHHHH---
Confidence 445555555566789999999999988 45666554433333332 111111111111111111111111
Q ss_pred ChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEE
Q 000324 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (1665)
Q Consensus 1560 ~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~ 1639 (1665)
...+.+....+...++||||.++..|..+..+|+- -+.....+
T Consensus 453 --~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-----------------------------------~gi~~q~l 495 (629)
T KOG0336|consen 453 --EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL-----------------------------------KGISSQSL 495 (629)
T ss_pred --HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-----------------------------------cccchhhc
Confidence 23334444547788999999999988888877631 23445689
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1640 HEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1640 H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
||+-.+.||...++.|++|+++|||+
T Consensus 496 HG~r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 496 HGNREQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred cCChhhhhHHHHHHhhhcCceEEEEE
Confidence 99999999999999999999999984
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=288.46 Aligned_cols=298 Identities=29% Similarity=0.475 Sum_probs=227.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+-++|++++..+-. +++|+||||||||||++++.|+...+.. +. +++|.+|.+||.+|.+.++..+|++. -
T Consensus 118 F~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 118 FELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred CCcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 3689999999998866 5569999999999999999999988877 33 89999999999999999999999854 2
Q ss_pred cEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhc
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~ 1498 (1665)
-.++.+||+.+.+ ..+.++|.|.|.+-+++.+ ....+..+..||+||+|.|++ ++|.+||.++- .+
T Consensus 191 ~~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~l 257 (1041)
T COG4581 191 DMVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-------LL 257 (1041)
T ss_pred hhccceecceeeC----CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHH-------hc
Confidence 3468999988776 6789999999999999877 556789999999999999998 66999998763 45
Q ss_pred CCCCeEEEEcccCCChHHHHHHhcccC-CcEEecCCCCCccceEEEEeec-------cc------chhhHHHHhcC----
Q 000324 1499 ENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGV-------DI------TNFEARMQAMT---- 1560 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n~~dl~~wl~~~~-~~~~~f~~~~rpv~l~i~i~~~-------~~------~~~~~~~~~~~---- 1560 (1665)
+..+|+|+||||++|+.++++|++... ..++.+....||+|++.++..- +. .++.+-+....
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 888999999999999999999998664 4566677888999999887432 00 11110000000
Q ss_pred -------------------------hhH-HHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCC
Q 000324 1561 -------------------------KPT-FTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (1665)
Q Consensus 1561 -------------------------k~~-~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~ 1612 (1665)
.+. ...+..++ ...-|+|+||-|++.|+..|..+...-.....+
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~-------- 409 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE-------- 409 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc--------
Confidence 000 01122221 345689999999999999998885433222222
Q ss_pred ccc-chhhH----hhh---------hHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1613 AEE-VEPFI----DNI---------QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1613 ~~~-l~~~~----~~i---------~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+. +..++ ..+ +-..+...|..|+++||+||-+..|..|+++|..|-++||+.
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFa 476 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFA 476 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEee
Confidence 222 22222 222 224567788999999999999999999999999999999974
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=285.73 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=193.7
Q ss_pred cccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH
Q 000324 1325 TALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~ 1404 (1665)
..+..+.++..| ||..|+|+|.++++.++++++ ++++||||+|||+||++|++.. .+ .+|||+|+++|+.
T Consensus 10 ~~~~~~~l~~~f-G~~~~r~~Q~~ai~~il~g~d-vlv~apTGsGKTl~y~lpal~~------~g--~tlVisPl~sL~~ 79 (607)
T PRK11057 10 ESLAKQVLQETF-GYQQFRPGQQEIIDAVLSGRD-CLVVMPTGGGKSLCYQIPALVL------DG--LTLVVSPLISLMK 79 (607)
T ss_pred hhHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHHHHHHHc------CC--CEEEEecHHHHHH
Confidence 334455666666 599999999999999999776 9999999999999999999832 33 7999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccchh-----cc--CCCcEEEEChhhHHH--HHHhhhccccCCCccEEEeecccc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~-----~l--~~~~IIV~TPe~l~~--l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
|+...++. + |+.+..+.+..+.+.. .+ ...+++++||+++.. +... ....++++|||||||+
T Consensus 80 dqv~~l~~-~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 80 DQVDQLLA-N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHH-c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCccc
Confidence 99998873 2 5777778777654421 11 235899999999863 2222 2235789999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+..+ |..++..+..+..+...+ ++.+++++|||+++. .++..+++.....++ .....||. +...+... ..
T Consensus 151 i~~~-G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~n-l~~~v~~~--~~-- 222 (607)
T PRK11057 151 ISQW-GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPN-IRYTLVEK--FK-- 222 (607)
T ss_pred cccc-cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCc-ceeeeeec--cc--
Confidence 9753 445555555565555444 478899999999874 367788776543332 22223332 11111100 00
Q ss_pred HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
. .......+ .. ..++++||||+|+++|+.++..|. ..+
T Consensus 223 -~----~~~l~~~l-~~-~~~~~~IIFc~tr~~~e~la~~L~-----------------------------------~~g 260 (607)
T PRK11057 223 -P----LDQLMRYV-QE-QRGKSGIIYCNSRAKVEDTAARLQ-----------------------------------SRG 260 (607)
T ss_pred -h----HHHHHHHH-Hh-cCCCCEEEEECcHHHHHHHHHHHH-----------------------------------hCC
Confidence 0 01111112 22 356789999999999999998873 235
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++.|||+|++.+|..+++.|++|.++||||
T Consensus 261 ~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVa 292 (607)
T PRK11057 261 ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVA 292 (607)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 56899999999999999999999999999997
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=268.99 Aligned_cols=297 Identities=20% Similarity=0.249 Sum_probs=202.9
Q ss_pred ccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---------CCCCeE--E
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---------ETGVMR--A 1393 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---------~~~~~r--~ 1393 (1665)
.|+.+++++|-. ||..|+|||+.++|.+..++-+|+..|.||||||+||-+||+..+.... ...+++ +
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCccee
Confidence 455678888866 9999999999999999999777999999999999999999998554421 112234 9
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch--hcc-CCCcEEEEChhhHHHHHHhhhc-cccCCCccEEE
Q 000324 1394 VYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFI 1469 (1665)
Q Consensus 1394 l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~llV 1469 (1665)
||++||||||.|+.+.+. ......++++..++||.+... +++ ..++|||||||||..++..... ...+..+.++|
T Consensus 267 LV~tPTRELa~QV~~Hl~-ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLV 345 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLK-AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLV 345 (731)
T ss_pred EEecChHHHHHHHHHHHH-HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEE
Confidence 999999999999999999 677789999999999988752 333 4679999999999988875332 34678899999
Q ss_pred eecccccCCCCchhHHHHHHHHHHHH-hhcCCCCeEEEEcccCCChH--HHHHHhcccCCc------------EEecCCC
Q 000324 1470 IDELHLIGGQGGPVLEVIVSRMRYIA-SQVENKIRIVALSTSLANAK--DLGEWIGATSHG------------LFNFPPG 1534 (1665)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~~srl~~i~-~~~~~~~riI~lSATl~n~~--dl~~wl~~~~~~------------~~~f~~~ 1534 (1665)
+||+|+|...+ +++.+-.-+..+. .+.....|.+.||||+.-.. .+..-....... ...|.
T Consensus 346 lDEaDRmvekg--hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~-- 421 (731)
T KOG0347|consen 346 LDEADRMVEKG--HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR-- 421 (731)
T ss_pred EccHHHHhhhc--cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc--
Confidence 99999998766 3444444444443 45557789999999986421 111110000000 00011
Q ss_pred CCccceEEEEeecccch-hhHHHHhc--ChhH--HHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccc
Q 000324 1535 VRPVPLEIHIQGVDITN-FEARMQAM--TKPT--FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609 (1665)
Q Consensus 1535 ~rpv~l~i~i~~~~~~~-~~~~~~~~--~k~~--~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l 1609 (1665)
..|.-+...-+.-.... ...++... .+.. |..|.. --+++|||||+..-+..++..|
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r---yPGrTlVF~NsId~vKRLt~~L--------------- 483 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR---YPGRTLVFCNSIDCVKRLTVLL--------------- 483 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee---cCCceEEEechHHHHHHHHHHH---------------
Confidence 11211111111100000 01111100 0000 001111 1356999999999999999776
Q ss_pred cCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1610 LWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1610 ~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+...--.+|+.|.++.|...++.|++..--||||
T Consensus 484 --------------------~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLia 519 (731)
T KOG0347|consen 484 --------------------NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIA 519 (731)
T ss_pred --------------------hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEe
Confidence 234455568999999999999999999999999998
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=258.25 Aligned_cols=285 Identities=21% Similarity=0.279 Sum_probs=190.5
Q ss_pred CCCCCCHHHHHHHHHHHcC--------CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNT--------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~--------~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
+++...|+|.+++|.++.. ..+|.|.||||||||+||.+||++.+... +-..+|||||+||++|+.|++..
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-CccceEEEEEeeHHHHHHHHHHH
Confidence 5899999999999999641 23499999999999999999999999884 33447999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEeCCCccch---hccC-----CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDL---KLLE-----KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~---~~l~-----~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~- 1480 (1665)
|. ++....|+.|+.++|..+... ++.. ..||+|+||+||.++++.. ....+++++++||||||+|++..
T Consensus 235 f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 235 FK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechHHHHHHHHH
Confidence 99 788888999999999877652 2221 3389999999999999863 35678999999999999997532
Q ss_pred ---chhHHHHHHHHH------HHHhh------------------cCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecC
Q 000324 1481 ---GPVLEVIVSRMR------YIASQ------------------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP 1532 (1665)
Q Consensus 1481 ---g~~~e~~~srl~------~i~~~------------------~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~ 1532 (1665)
=+.....+..++ .+..+ ..++.+.+.+|||+.. +..+.+ +......++...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~-l~l~~Prl~~v~ 391 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKD-LTLHIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhh-hhcCCCceEEee
Confidence 111111111110 11110 1123446667777754 222222 211111222211
Q ss_pred CCCCccceEEEEeecccchhhHH----HHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCccccc
Q 000324 1533 PGVRPVPLEIHIQGVDITNFEAR----MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (1665)
Q Consensus 1533 ~~~rpv~l~i~i~~~~~~~~~~~----~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (1665)
. | .+..+..+..... .....+|.+..-+-+.....++|+|++|..++..++..|.-..
T Consensus 392 ~---~-----~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~---------- 453 (620)
T KOG0350|consen 392 K---P-----LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF---------- 453 (620)
T ss_pred c---c-----cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh----------
Confidence 0 0 0011111111111 1111233333322232567789999999999999998884211
Q ss_pred ccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
......+..+.|+++.+.|...++.|..|.|+||||
T Consensus 454 ---------------------~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIc 489 (620)
T KOG0350|consen 454 ---------------------CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLIC 489 (620)
T ss_pred ---------------------ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEe
Confidence 112334566899999999999999999999999999
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=277.67 Aligned_cols=343 Identities=20% Similarity=0.210 Sum_probs=214.0
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh
Q 000324 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (1665)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~ 594 (1665)
|+.||||||||.+|+.++...+.. +.+++|++|+++|+.|++++|++.+ |.++..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-----------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-----------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 578999999999998777666543 3479999999999999999999876 56788999987654321
Q ss_pred -------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCchHHHHH-HHHHHHHHhhccCCeeEE
Q 000324 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESI-VARTVRQIETTKEHIRLV 664 (1665)
Q Consensus 595 -------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg~~le~i-v~r~~~~~~~~~~~~riV 664 (1665)
....+|+|+|+..+ . ..+.++++|||||+|.... ..+|.+..- ++.+ .....+.++|
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---f------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~----ra~~~~~~vi 133 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---F------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY----RAKKFNCPVV 133 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---c------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH----HHHhcCCCEE
Confidence 13679999999843 1 2467899999999998753 334443210 1111 1234578999
Q ss_pred EEcccCCChHHHHHHHhccccCceEEecCCC--ccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhC-CCeEEEEec
Q 000324 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVH 741 (1665)
Q Consensus 665 ~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~vLVFv~ 741 (1665)
++||| |..+.......... ........+ ++.| ...++...... . ...+...+++.+.+... ++|+|||+|
T Consensus 134 l~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p-~v~vid~~~~~--~-~~~ls~~l~~~i~~~l~~g~qvLvfln 206 (505)
T TIGR00595 134 LGSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPP-EVKLIDMRKEP--R-QSFLSPELITAIEQTLAAGEQSILFLN 206 (505)
T ss_pred EEeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCC-eEEEEeccccc--c-cCCccHHHHHHHHHHHHcCCcEEEEEe
Confidence 99999 66555544432110 111111111 1111 22233222111 0 01233445555555444 679999999
Q ss_pred ChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhh----------hccc--------------cchhhhhcC-Cc
Q 000324 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----------DMVK--------------SNDLKDLLP-YG 796 (1665)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~----------~~~~--------------~~~l~~ll~-~g 796 (1665)
+|..+-.+...=+.....+...+..+..+.......+..+ ..+. .+.|+..++ ..
T Consensus 207 rrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~ 286 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGAR 286 (505)
T ss_pred CCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCc
Confidence 9987654444333333333322222211111111111111 0111 234555554 57
Q ss_pred EEEecCCCCHHHH--HHHHHHHhCCCCCeEEeccccccccCCCceEEE--EecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 797 FAIHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 797 v~~~Hagm~~~dR--~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
|...|+.++...+ +.+++.|++|+.+|||+|+.+++|+|+|++++| ++.+...+.+..+-.+-....|+|++||||
T Consensus 287 v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRag 366 (505)
T TIGR00595 287 IARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAG 366 (505)
T ss_pred EEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccC
Confidence 8899999987766 899999999999999999999999999999876 454433333433334446788999999999
Q ss_pred CCCCCCceEEEEEeCCCcHHH
Q 000324 873 RPQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~ 893 (1665)
|.+ ..|.+++.+...+...
T Consensus 367 R~~--~~g~viiqt~~p~~~~ 385 (505)
T TIGR00595 367 RAE--DPGQVIIQTYNPNHPA 385 (505)
T ss_pred CCC--CCCEEEEEeCCCCCHH
Confidence 966 7899998887765433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=256.72 Aligned_cols=286 Identities=21% Similarity=0.295 Sum_probs=220.6
Q ss_pred CcccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccH
Q 000324 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Ptr 1400 (1665)
++.-+|....++++.. ||+.|+|||.+++|.++.+.+ ++..|-||||||.||.+|++.++.... ..+.|++++.||+
T Consensus 23 fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralilsptr 100 (529)
T KOG0337|consen 23 FQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTR 100 (529)
T ss_pred ccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcH
Confidence 3445677888899887 899999999999999999888 999999999999999999999999865 5667999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.|+.+..+ .++...+++..+++|+.+...+ +..++|||+|||+++..+.-. -...++.|.+||+||+|.|.
T Consensus 101 eLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve--m~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 101 ELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE--MTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh--eeccccceeeeeehhhhHHH
Confidence 99999999888 8999899999988887766533 445789999999998766543 23458899999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~ 1557 (1665)
+++ +..++..+.++++...|.++||||+|+. +.++-... ...|+.+.+.+..--......+..
T Consensus 178 emg------fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaG---------l~~p~lVRldvetkise~lk~~f~ 240 (529)
T KOG0337|consen 178 EMG------FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAG---------LVPPVLVRLDVETKISELLKVRFF 240 (529)
T ss_pred hhh------hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHcc---------CCCCceEEeehhhhcchhhhhhee
Confidence 776 7888889999999999999999999875 33333221 113333333322221122222222
Q ss_pred hcChh----HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1558 AMTKP----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1558 ~~~k~----~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
...+. ++..++......++++|||+|+.+++.+..-| ...+
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll-----------------------------------~~~g 285 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL-----------------------------------RDFG 285 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH-----------------------------------HhcC
Confidence 22221 22223332233457999999999999888665 3467
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.++..++|.|.+.-|..-...|+.|+..+||
T Consensus 286 ~~~s~iysslD~~aRk~~~~~F~~~k~~~lv 316 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEARKINGRDFRGRKTSILV 316 (529)
T ss_pred CCccccccccChHhhhhccccccCCccceEE
Confidence 7788999999999999999999999999887
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=264.47 Aligned_cols=297 Identities=26% Similarity=0.439 Sum_probs=223.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.+-|+|.+++.++=+ +++|+|+|.|.+|||++|+.||...+.. +. |++|-.|.++|.+|.|+++...|+
T Consensus 129 ~LDpFQ~~aI~Cidr-~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~----- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDR-GESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFK----- 197 (1041)
T ss_pred ccCchHhhhhhhhcC-CceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhc-----
Confidence 688999999988855 5669999999999999999999999887 33 999999999999999999999997
Q ss_pred EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhcC
Q 000324 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~~ 1499 (1665)
.|+++||+.+.+ ..+..+|.|.|.|.+++.+ +...++.|.+||+||+|-|-+ .+|-+||.-+- .+|
T Consensus 198 DVGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII-------llP 264 (1041)
T KOG0948|consen 198 DVGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-------LLP 264 (1041)
T ss_pred ccceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEE-------ecc
Confidence 589999998876 5678999999999998876 667789999999999999977 67999987441 358
Q ss_pred CCCeEEEEcccCCChHHHHHHhcccC-CcEEecCCCCCccceEEEEee---------------cccchhhHHHHhcCh--
Q 000324 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQG---------------VDITNFEARMQAMTK-- 1561 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~~dl~~wl~~~~-~~~~~f~~~~rpv~l~i~i~~---------------~~~~~~~~~~~~~~k-- 1561 (1665)
.++++|+||||+||+.++|+|+-... ..+..+=...||.|+..++.. |...++...|....+
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 99999999999999999999986543 333333457799999877532 222233333332211
Q ss_pred -------------------------hHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCccc
Q 000324 1562 -------------------------PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (1665)
Q Consensus 1562 -------------------------~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (1665)
..+..+..-. ....|+|||+-|++.|+..|..+.+.-..+..++... .+-
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V----~~i 420 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV----ETI 420 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH----HHH
Confidence 1122222111 3467899999999999999999865544433332200 000
Q ss_pred chhhHhhhh--------HHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1616 VEPFIDNIQ--------EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1616 l~~~~~~i~--------d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
....++.+. -++....+..|||+||+||-+--+..|+-+|.+|-++||++
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFA 478 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFA 478 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHh
Confidence 011111111 13456678999999999999999999999999999999874
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-26 Score=251.08 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=216.4
Q ss_pred chhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh------cCCCCeEEEEEcccH
Q 000324 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLE 1400 (1665)
Q Consensus 1328 ~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~------~~~~~~r~l~I~Ptr 1400 (1665)
+.++++.+.. |+.+|||||.|-+|.++.|+| .+..|-||||||++|.||++....+. ..+.+|..|||||+|
T Consensus 178 P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSR 256 (610)
T KOG0341|consen 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSR 256 (610)
T ss_pred CHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcH
Confidence 3566777766 899999999999999999998 99999999999999999998765553 134467999999999
Q ss_pred HHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeec
Q 000324 1401 ALAKERYRDWEIKFGQ-----GLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472 (1665)
Q Consensus 1401 eLa~Q~~~~~~~~~~~-----~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDE 1472 (1665)
|||.|++..+...+.. ...++...+.|+.+...+ ...+.||+|+||++|.+++.. ...++.-++++++||
T Consensus 257 ELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDE 334 (610)
T KOG0341|consen 257 ELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDE 334 (610)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhh
Confidence 9999999988744432 134678888898876633 334559999999999999875 556788899999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccch
Q 000324 1473 LHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551 (1665)
Q Consensus 1473 aH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~ 1551 (1665)
||++.+.+ |-..++.+...+....|.++||||+|.. ..++. +.-+.|+.+.+.--+...-+
T Consensus 335 ADRmiDmG------FEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk------------SALVKPvtvNVGRAGAAsld 396 (610)
T KOG0341|consen 335 ADRMIDMG------FEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK------------SALVKPVTVNVGRAGAASLD 396 (610)
T ss_pred HHHHhhcc------chhhHHHHHHHHhhhhheeeeeccccHHHHHHHH------------hhcccceEEecccccccchh
Confidence 99999888 7788888888888999999999999864 22222 23346666666555544444
Q ss_pred hhHHHHhcCh-hHHHHHHHHhcC-CCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHH
Q 000324 1552 FEARMQAMTK-PTFTAIVQHAKN-EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (1665)
Q Consensus 1552 ~~~~~~~~~k-~~~~~i~~~l~~-~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (1665)
..+....+.. ...-.+++.+.. ..|+||||..+..+..+...|.
T Consensus 397 ViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLL---------------------------------- 442 (610)
T KOG0341|consen 397 VIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLL---------------------------------- 442 (610)
T ss_pred HHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHH----------------------------------
Confidence 4444333322 122334444433 4569999999999988887772
Q ss_pred HHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1630 ~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.-+..+..+|||-.++||...++.|+.|+-.|||+
T Consensus 443 -lKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 443 -LKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred -HccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 12445688999999999999999999999999984
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=289.09 Aligned_cols=284 Identities=19% Similarity=0.199 Sum_probs=188.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
...|+++|+.+++.++.+. +++++||||||||. |.++++..+... +.+++||+||++||.|+++.+..
T Consensus 76 g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHHHHHHHHHHHH
Confidence 3479999999999998875 59999999999997 556665554331 45899999999999999999999
Q ss_pred hhccCCcEE---EEEECCCcccHhh-----h--ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-C---
Q 000324 573 RLQMYDVKV---RELSGDQTLTRQQ-----I--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (1665)
Q Consensus 573 ~~~~~gi~V---~~ltGd~~~~~~~-----~--~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~--- 638 (1665)
.....|+.+ +.++|+.+...+. + ..++|+|+||+++........ .+++++|+||||.+.+ .
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887766654 3578887655431 1 248999999998643333221 1789999999999976 2
Q ss_pred --------Cch-HHHHHHHHH---------------HHHHhhccCCee--EEEEcccCCChHHHH-HHHhccccCceEEe
Q 000324 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (1665)
Q Consensus 639 --------rg~-~le~iv~r~---------------~~~~~~~~~~~r--iV~lSATl~n~~dv~-~~l~~~~~~~~~~f 691 (1665)
+.+ .++.++..+ .......+...| ++.+|||..+. .+. .+++... .+..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~ll---~~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRELL---GFEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccccc---ceEe
Confidence 222 234433211 111112233333 67789994332 122 2222111 1122
Q ss_pred cCCCc-cccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecCh---hHHHHHHHHHHHHhhhcccccccc
Q 000324 692 DNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 692 ~~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
..... .-.+.+.++.... ....+. + ++... +.++||||+++ +.|..++..|...+.
T Consensus 295 ~~~~~~~r~I~~~~~~~~~-----~~~~L~----~-ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~--------- 354 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED-----LKETLL----E-IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGV--------- 354 (1171)
T ss_pred cCccccccceEEEEEeccc-----HHHHHH----H-HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCc---------
Confidence 21111 1123333332111 111111 2 22223 46899999999 999999998876542
Q ss_pred ccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEec----cccccccCCCc-eEEE
Q 000324 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST----ATLAWGVNLPA-HTVI 842 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT----~tla~GVdlP~-v~vV 842 (1665)
.+..+||+|+ ..+++.|++|+++||||| ++++||||+|+ +++|
T Consensus 355 ----------------------------~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 355 ----------------------------KAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred ----------------------------eEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 3567799997 368899999999999994 89999999999 8999
Q ss_pred EecccccCCCC
Q 000324 843 IKGTQIYNPEK 853 (1665)
Q Consensus 843 I~~t~~yd~~~ 853 (1665)
|+ |+.|+
T Consensus 403 I~----~~~P~ 409 (1171)
T TIGR01054 403 VF----LGVPK 409 (1171)
T ss_pred EE----ECCCC
Confidence 99 99886
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=265.71 Aligned_cols=323 Identities=15% Similarity=0.118 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|..+...+..+ .|..++||+|||++|.+|++-.... +..+.+++|++.||.|.++.+...+
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 6778888887765443 4999999999999999999543332 2258999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEeccccccc--CCchHH---
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLHD--NRGPVL--- 643 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~d--~rg~~l--- 643 (1665)
..+|++|+.++|+.+...+ ....++|+|+||.++ |.+..+. .+...++.+.++||||+|.++- .|.|.+
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 9999999999998775543 334689999999986 6665442 1224567899999999997742 232211
Q ss_pred --------HHHHHHHHHHHhhc-----cCCe-------------------------------------------------
Q 000324 644 --------ESIVARTVRQIETT-----KEHI------------------------------------------------- 661 (1665)
Q Consensus 644 --------e~iv~r~~~~~~~~-----~~~~------------------------------------------------- 661 (1665)
-.....+.+.+... ...-
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 11111121111100 0011
Q ss_pred ------------------------------------------------------------eEEEEcccCCChHHHHHHHh
Q 000324 662 ------------------------------------------------------------RLVGLSATLPNYEDVALFLR 681 (1665)
Q Consensus 662 ------------------------------------------------------------riV~lSATl~n~~dv~~~l~ 681 (1665)
++.|||.|... +-..|..
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~~ 359 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFEK 359 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHHH
Confidence 22333333221 1111111
Q ss_pred ccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhcc
Q 000324 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (1665)
Q Consensus 682 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (1665)
... - -+..-|..+|+.....--.+. .....++.++. .+....+..+.|+||||+|...++.++..|...+..
T Consensus 360 iY~-l-~vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai~---~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~-- 431 (745)
T TIGR00963 360 IYN-L-EVVVVPTNRPVIRKDLSDLVY-KTEEEKWKAVV---DEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP-- 431 (745)
T ss_pred HhC-C-CEEEeCCCCCeeeeeCCCeEE-cCHHHHHHHHH---HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC--
Confidence 110 0 011122233321111000000 01112222222 222223445889999999999999999999886533
Q ss_pred ccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCc---
Q 000324 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA--- 838 (1665)
Q Consensus 762 ~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~--- 838 (1665)
..++||+ +.+|+..+..|+.+...|+|||+.++||+|++.
T Consensus 432 -----------------------------------~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 432 -----------------------------------HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred -----------------------------------eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 3455888 789999999999999999999999999999998
Q ss_pred ----eEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 839 ----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 839 ----v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
..+||. |+.+. |...+.|+.|||||.| ..|.+..+.+..+
T Consensus 475 ~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 475 KELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred hhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 558998 77766 8889999999999998 7899988887654
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=278.15 Aligned_cols=290 Identities=21% Similarity=0.312 Sum_probs=210.7
Q ss_pred ccccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEccc
Q 000324 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPL 1399 (1665)
Q Consensus 1324 ~~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~Pt 1399 (1665)
..++...+++.+.. ||..++|||.||+|+++.|++ ||.+|-||||||++|.||+++|....+ ...+|.+||++||
T Consensus 369 q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPt 447 (997)
T KOG0334|consen 369 QCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPT 447 (997)
T ss_pred hCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCC
Confidence 35566677788855 799999999999999999998 999999999999999999999987753 2336899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhcc-ccCCCccEEEeecccc
Q 000324 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQR-KYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1400 reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~-~~l~~v~llViDEaH~ 1475 (1665)
++|+.|+.+.++ +|.+.+++++++.+|+.....+ +-+++.|+||||++..+++-....+ -++..+.++|+||||+
T Consensus 448 rela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDr 526 (997)
T KOG0334|consen 448 RELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADR 526 (997)
T ss_pred HHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhh
Confidence 999999999888 8888899999999999876532 3356799999999998876553333 2566677999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcE-EecCCCC-CccceEEEEeecccchh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGL-FNFPPGV-RPVPLEIHIQGVDITNF 1552 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~-~~f~~~~-rpv~l~i~i~~~~~~~~ 1552 (1665)
+.+.+ ++. ....|...+++..|++++|||++.. ..++.-+...+..+ +.....+ ..+...+.+.......+
T Consensus 527 mfdmg---feP---q~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 527 MFDMG---FEP---QITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred hheec---cCc---ccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 98655 222 2222555567899999999999885 23444433222111 1100000 11122222211111111
Q ss_pred hHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
.. +..++.......++||||.+..+|..+..+|+. .
T Consensus 601 ~k---------L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-----------------------------------a 636 (997)
T KOG0334|consen 601 LK---------LLELLGERYEDGKTIIFVDKQEKADALLRDLQK-----------------------------------A 636 (997)
T ss_pred HH---------HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh-----------------------------------c
Confidence 11 122333335678999999999999999988842 3
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++.+..+|||.++.+|..+++.|++|.+.+|||
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEe
Confidence 444566999999999999999999999999997
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=251.84 Aligned_cols=281 Identities=18% Similarity=0.319 Sum_probs=215.4
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
..|++.++..+|+ ||..|+.||+.|+..+..|.+ +++.+++|+|||.+|.+++++.+...... ..+++++|+++|+
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~~ke--~qalilaPtreLa 107 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMSVKE--TQALILAPTRELA 107 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcchHH--HHHHHhcchHHHH
Confidence 3566789999999 999999999999999999877 99999999999999999999987653222 3899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc--hhcc--CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~ 1479 (1665)
.|+.+... .++..++.++..+.|+.... ...+ ..++|+|+||+++..++.+ .......++++|+||+|.+++.
T Consensus 108 ~qi~~v~~-~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 108 QQIQKVVR-ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred HHHHHHHH-hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhhhcc
Confidence 99998777 78888899999888887654 2222 3469999999999998876 3556677999999999999877
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHh
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (1665)
Q Consensus 1480 ~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~ 1558 (1665)
+ +...+..+..+++.++|++++|||.+.. .++.+-+... |+++.+.-+........+....
T Consensus 185 g------fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~------------pv~i~vkk~~ltl~gikq~~i~ 246 (397)
T KOG0327|consen 185 G------FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMRE------------PVRILVKKDELTLEGIKQFYIN 246 (397)
T ss_pred c------hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccC------------ceEEEecchhhhhhheeeeeee
Confidence 7 7888888889999999999999999873 3555544332 2222222222111111111111
Q ss_pred cCh-hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1559 MTK-PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1559 ~~k-~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
..+ +.+..+........+++|||||++.+..+...| ...++.+.
T Consensus 247 v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L-----------------------------------~~~~~~~s 291 (397)
T KOG0327|consen 247 VEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKL-----------------------------------RAHGFTVS 291 (397)
T ss_pred ccccccccHHHHHHHhhhcceEEecchhhHHHHHHHH-----------------------------------hhCCceEE
Confidence 111 112222222235567999999999999998776 34567789
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.+|+.|.+.+|..++..|+.|..+|||
T Consensus 292 ~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 292 AIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred EeecccchhhhhHHHHHhhcCCceEEe
Confidence 999999999999999999999999997
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=272.71 Aligned_cols=314 Identities=19% Similarity=0.201 Sum_probs=195.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
...++|+|..+... -.+...+||.||||+|||.+++.++.+.+... ...+++|..||+++++++++++.+
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~---------~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG---------LADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---------CCCeEEEECcHHHHHHHHHHHHHH
Confidence 44899999987543 23456799999999999999988776554332 134799999999999999999986
Q ss_pred hhccC--CcEEEEEECCCcccH-----------------------hhh-------ccccEEEeChhhH-HHHHhhcCCCc
Q 000324 573 RLQMY--DVKVRELSGDQTLTR-----------------------QQI-------EETQIIVTTPEKW-DIITRKSGDRT 619 (1665)
Q Consensus 573 ~~~~~--gi~V~~ltGd~~~~~-----------------------~~~-------~~~~IiV~TPekl-d~l~r~~~~~~ 619 (1665)
.+... ..+|..++|....+. +.. --++|+|||+.++ ..++.... .
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~ 431 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--R 431 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--H
Confidence 44322 346777787654321 001 1268999999985 33332211 1
Q ss_pred cccce----eEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH--HHHHHHhcc-c---c--Cc
Q 000324 620 YTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVN-L---E--KG 687 (1665)
Q Consensus 620 ~l~~v----~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~--dv~~~l~~~-~---~--~~ 687 (1665)
++..+ ++|||||+|.+.. .+..++.++++.... ...++|+||||+|... .+..-.+.. + . -+
T Consensus 432 ~lR~~~La~svvIiDEVHAyD~----ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP 505 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHAYDA----YMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP 505 (878)
T ss_pred HHHHHhhccCeEEEechhhCCH----HHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc
Confidence 22222 5899999998732 333444445444333 3567999999998521 121111110 0 0 00
Q ss_pred eE---------EecCCCc----cccceEEEEeeecCchhHHHHHHHHHHHHHHHHH-hCCCeEEEEecChhHHHHHHHHH
Q 000324 688 LF---------YFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 688 ~~---------~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L 753 (1665)
+. .|....+ +.+....+.......... ...+.+.+.+. ..+++++|||||++.++.+++.|
T Consensus 506 lvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~-----~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 506 LITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLP-----DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred cccccccccceeeeccccccccCcceEEEEEeeccccccC-----HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 00 0100001 111111111010000000 01223333332 34789999999999999999998
Q ss_pred HHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHH----HHHHHH-hCCC---CCeEE
Q 000324 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVLV 825 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~----~v~~~F-~~g~---i~VLV 825 (1665)
++.... ...+..+||+++..+|. .+++.| ++|. .+|||
T Consensus 581 ~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 581 KELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 864211 12378899999999995 456677 6665 47999
Q ss_pred eccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC
Q 000324 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1665)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (1665)
||+++++|||++ .+++|. ... ++..++||+||+||.+.
T Consensus 627 aTQViE~GLDId-~DvlIt----dla--------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLD-FDWLIT----QLC--------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecC-CCeEEE----CCC--------CHHHHHHHHhccCCCCC
Confidence 999999999995 578886 222 56789999999999875
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=279.22 Aligned_cols=301 Identities=21% Similarity=0.263 Sum_probs=224.1
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1332 ~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
...+.. |+..|.++|.+|+..+.+|+ |++|++|||||||.||++||+.++.+.+ .. ++|||.||+||++++.+++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~-~vvVtTgTgSGKTe~FllPIld~~l~~~-~a--~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGR-NVVVTTGTGSGKTESFLLPILDHLLRDP-SA--RALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCC-CEEEECCCCCchhHHHHHHHHHHHhhCc-Cc--cEEEEechhhhHhhHHHHH
Confidence 444444 67779999999999999974 5999999999999999999999999943 33 8999999999999999999
Q ss_pred HHHhcCCC-CcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHH-HHhhh-ccccCCCccEEEeecccccCCCCchhH
Q 000324 1411 EIKFGQGL-GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDAL-SRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (1665)
Q Consensus 1411 ~~~~~~~~-~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l-~r~~~-~~~~l~~v~llViDEaH~l~~~~g~~~ 1484 (1665)
.+...... ++.+..++|++....+ ....++|+++||.+|+.+ ++.+. .+..+.++++||+||+|.+-+-.|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 95444432 5899999999988755 356779999999999884 44322 233567899999999999998999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHH-H-hcChh
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM-Q-AMTKP 1562 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~-~-~~~k~ 1562 (1665)
..++.|++.+....+.+.|+|+.|||++|..++++-+.......- +..+..|-.....+...+........ . +....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~ 294 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH
Confidence 999999999999989999999999999998887776655443331 33333343333333333211111111 0 11111
Q ss_pred HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCC
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~ 1642 (1665)
.-..+...+..+-++|+|+.|+++++.++..........+ ..+...|..|||+
T Consensus 295 ~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~---------------------------~~l~~~v~~~~~~ 347 (851)
T COG1205 295 LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG---------------------------GKLLDAVSTYRAG 347 (851)
T ss_pred HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc---------------------------hhhhhheeecccc
Confidence 1122223335678899999999999999855432221111 1234568999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 000324 1643 LNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
|...+|..++..|++|++.+++
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEe
Confidence 9999999999999999999987
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=278.35 Aligned_cols=256 Identities=18% Similarity=0.225 Sum_probs=186.5
Q ss_pred CCCCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
| .+||+|.+|++.++++ ..+++++||||||||.+|++|++..+.. +. +++|++||++||.|+++.+++.
T Consensus 450 f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 450 F-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred C-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHHHHHHHHH
Confidence 6 5999999999999874 3469999999999999999999988765 23 9999999999999999999976
Q ss_pred hcCCCCcEEEEEeCCCccch-----hccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~ 1486 (1665)
|.. .++++..++|..+... +.+. .++|||+||..+ . ....+.+++++||||+|+++.. .
T Consensus 524 ~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~---~~v~f~~L~llVIDEahrfgv~----~-- 589 (926)
T TIGR00580 524 FAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q---KDVKFKDLGLLIIDEEQRFGVK----Q-- 589 (926)
T ss_pred hcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h---CCCCcccCCEEEeecccccchh----H--
Confidence 664 5789999999876431 1122 469999999432 2 2345789999999999997421 1
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHH-hcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHH
Q 000324 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~w-l~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~ 1565 (1665)
... ...+..++++++||||+.+ +.+... .+.....++...|..| .++..++..+. ......
T Consensus 590 -~~~----L~~~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----------~~~i~~ 651 (926)
T TIGR00580 590 -KEK----LKELRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----------PELVRE 651 (926)
T ss_pred -HHH----HHhcCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----------HHHHHH
Confidence 112 2334678999999999644 444333 3433333444444433 23443333221 112233
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCH
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~ 1645 (1665)
.+...+..+++++||||++++++.++..|.... -+..|+.+||+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~---------------------------------p~~~v~~lHG~m~~ 698 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELV---------------------------------PEARIAIAHGQMTE 698 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC---------------------------------CCCeEEEecCCCCH
Confidence 444555678899999999999999997773211 13569999999999
Q ss_pred HHHHHHHHHHhcCCceEEEC
Q 000324 1646 TDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+|..+++.|++|+++||||
T Consensus 699 ~eRe~im~~F~~Gk~~ILVa 718 (926)
T TIGR00580 699 NELEEVMLEFYKGEFQVLVC 718 (926)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 99999999999999999998
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=254.06 Aligned_cols=316 Identities=24% Similarity=0.345 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHcC---C--CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS---A--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
+||.-|++++..+... . -|=|+.|.-|||||++|+++++..+.. ++.+..++||--||.|-+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHH
Confidence 7899999999988653 2 266999999999999999999999865 56899999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1665)
+.+++.++|++|..+||...-..+. ..+.+|+|+|.- |.. +...++++.|+|+||=|+.+- .
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQ---d~V~F~~LgLVIiDEQHRFGV----~ 399 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQ---DKVEFHNLGLVIIDEQHRFGV----H 399 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhh---cceeecceeEEEEeccccccH----H
Confidence 9999999999999999987654332 246899999975 222 234678899999999997642 2
Q ss_pred HHHHHHHHHHHHhhccC-CeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHH
Q 000324 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~-~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
- | ..+...+. .+.++.|||| |-+.-++--.-.+.....+.--+..| .|+....+. ......
T Consensus 400 Q-----R--~~L~~KG~~~Ph~LvMTAT-PIPRTLAlt~fgDldvS~IdElP~GR-kpI~T~~i~--~~~~~~------- 461 (677)
T COG1200 400 Q-----R--LALREKGEQNPHVLVMTAT-PIPRTLALTAFGDLDVSIIDELPPGR-KPITTVVIP--HERRPE------- 461 (677)
T ss_pred H-----H--HHHHHhCCCCCcEEEEeCC-CchHHHHHHHhccccchhhccCCCCC-CceEEEEec--cccHHH-------
Confidence 1 1 11223344 6889999999 44454443333222211111111111 233333332 221111
Q ss_pred HHHHHHHH-HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhc-CCcEEE
Q 000324 722 LCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFAI 799 (1665)
Q Consensus 722 ~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll-~~gv~~ 799 (1665)
+++.+.. ...++|+.|.|+-..+.+++-..-.... ...|+..+ .+.|+.
T Consensus 462 -v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~----------------------------~~~L~~~~~~~~vgL 512 (677)
T COG1200 462 -VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEEL----------------------------YEELKSFLPELKVGL 512 (677)
T ss_pred -HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHH----------------------------HHHHHHHcccceeEE
Confidence 2233332 2348899999998777663321000000 01112222 245999
Q ss_pred ecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCc
Q 000324 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 800 ~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (1665)
.||.|+..+++.|++.|++|+++|||||.+.+.|||+|+.++.|- +|++. +..++.-|--||.||.+ ..
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~q 581 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--LQ 581 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--cc
Confidence 999999999999999999999999999999999999999999776 78775 48999999999999965 78
Q ss_pred eEEEEEeCCCc
Q 000324 880 GEGIIITGHSE 890 (1665)
Q Consensus 880 G~~iil~~~~~ 890 (1665)
+.|++++.+..
T Consensus 582 SyC~Ll~~~~~ 592 (677)
T COG1200 582 SYCVLLYKPPL 592 (677)
T ss_pred eEEEEEeCCCC
Confidence 99999998755
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=254.51 Aligned_cols=286 Identities=26% Similarity=0.355 Sum_probs=209.6
Q ss_pred chhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc---CCCCeEEEEEcccHHHH
Q 000324 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1328 ~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~---~~~~~r~l~I~PtreLa 1403 (1665)
...+++++-. +|..|+|+|.+|+|.+++.++ ++.|||||||||++|.+|++.++.... ...+.+++|+.|+++|+
T Consensus 144 ~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~-~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa 222 (593)
T KOG0344|consen 144 NKRLLENLQELGFDEPTPIQKQAIPVFLEKRD-VLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELA 222 (593)
T ss_pred cHHHHHhHhhCCCCCCCcccchhhhhhhcccc-eEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHH
Confidence 4455666655 799999999999999999766 999999999999999999999998853 25567999999999999
Q ss_pred HHHHHHHHHHhc--CCCCcEEEEEeCCCccchh----ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1404 KERYRDWEIKFG--QGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~--~~~~i~v~~l~G~~~~~~~----~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
.|++.++. .+. ...+.++..+......+.+ ....++|+|+||-++..++........+.+|.++|+||+|++.
T Consensus 223 ~Qi~re~~-k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 223 AQIYREMR-KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHH-hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 99999998 666 5566666666665333321 2345699999999988887764444578999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHhhcC-CCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHH
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVE-NKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~-~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~ 1556 (1665)
+. +.+...+..|.+.+. +.+++-+||||++ ..+.+|.........+..-..++... ....+..
T Consensus 302 e~-----~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~---------~~V~Qel 365 (593)
T KOG0344|consen 302 EP-----EFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSAN---------ETVDQEL 365 (593)
T ss_pred Ch-----hhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHh---------hhhhhhh
Confidence 76 336677766666554 5677889999975 45778887665444443222222111 1111111
Q ss_pred Hh--cChhHHHHHHHHhc--CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh
Q 000324 1557 QA--MTKPTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (1665)
Q Consensus 1557 ~~--~~k~~~~~i~~~l~--~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (1665)
.. -.+..+.++.+.+. -..|++|||.|..+|..+...|- .+-
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----------------------------------~~~ 411 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----------------------------------IYD 411 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----------------------------------hcc
Confidence 11 11222333333332 34679999999999999997772 112
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1633 ~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...|+++||+.++.+|..++++|+.|+|+||||
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 345899999999999999999999999999999
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=264.62 Aligned_cols=270 Identities=17% Similarity=0.192 Sum_probs=171.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCe-EEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVM-RAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~-r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
||. |+|||.++++.++.|+++++++||||||||.++.++++..... ...+ +.||++|||+|+.|+++.+. ++++
T Consensus 13 G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~---~~~~~rLv~~vPtReLa~Qi~~~~~-~~~k 87 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG---AKVPRRLVYVVNRRTVVDQVTEEAE-KIGE 87 (844)
T ss_pred CCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc---ccccceEEEeCchHHHHHHHHHHHH-HHHH
Confidence 688 9999999999999998779999999999999765444422111 1122 45568899999999999998 4554
Q ss_pred CC-----------------------CcEEEEEeCCCccchh---ccCCCcEEEEChhhHHH-HH-Hhhh--------ccc
Q 000324 1417 GL-----------------------GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDA-LS-RRWK--------QRK 1460 (1665)
Q Consensus 1417 ~~-----------------------~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~-l~-r~~~--------~~~ 1460 (1665)
.+ ++++..++|+.+.+.+ +-.+++|||+|++.+.. .+ +.+. ..-
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag 167 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAG 167 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhh
Confidence 32 4889999999877633 33567999999755431 00 0000 001
Q ss_pred cCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc--CC---CCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCC
Q 000324 1461 YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV--EN---KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPG 1534 (1665)
Q Consensus 1461 ~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~--~~---~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~ 1534 (1665)
.+.++.++|+|||| + ..+ +...+..|.+.+ +. +.|+++||||++. ..+++..+..... .+.+...
T Consensus 168 ~L~~v~~LVLDEAD-L-d~g------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~-~i~V~~~ 238 (844)
T TIGR02621 168 FLGQDALIVHDEAH-L-EPA------FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY-KHPVLKK 238 (844)
T ss_pred hhccceEEEEehhh-h-ccc------cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc-eeecccc
Confidence 26789999999999 3 333 444555555532 22 3699999999976 3345555543321 1111111
Q ss_pred CCccceEEEEeecccchhhHHHHhcChhHHHHHHHH-hcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCc
Q 000324 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (1665)
Q Consensus 1535 ~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~-l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (1665)
. .......+.+...... ... .....+... ...++++||||||++.|+.++..|.
T Consensus 239 ~--l~a~ki~q~v~v~~e~-Kl~----~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~------------------ 293 (844)
T TIGR02621 239 R--LAAKKIVKLVPPSDEK-FLS----TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP------------------ 293 (844)
T ss_pred c--ccccceEEEEecChHH-HHH----HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH------------------
Confidence 1 1110001111111100 000 011111111 1345789999999999999998872
Q ss_pred ccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHH-----HHHHHHhc----CC-------ceEEEC
Q 000324 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE-----VVSALFEA----GK-------IKICYR 1665 (1665)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~-----~v~~~F~~----G~-------i~VLVC 1665 (1665)
..++..+||+|++.+|. .+++.|++ |. .+||||
T Consensus 294 -------------------~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVA 342 (844)
T TIGR02621 294 -------------------KEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVC 342 (844)
T ss_pred -------------------hcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEec
Confidence 12348999999999999 88999987 54 789987
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=253.80 Aligned_cols=293 Identities=17% Similarity=0.224 Sum_probs=222.6
Q ss_pred cccchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
.+|..+++..|.. +|..|++||..|||.++.+=| +||+|..|+|||++|..+++..+... ...++++|++||||++
T Consensus 30 l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 30 LALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEecchhhh
Confidence 4566678888876 799999999999999998777 99999999999999999998888763 3345999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEeCCCccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1404 ~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
-|+...+.+......|.++..+.||+... ...++.++|+|+||||+..+... ...++.+++|+|+||||.+.+..
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~- 183 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE- 183 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh-
Confidence 99999999443345789999999997654 56778999999999999988876 56678999999999999987633
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCC-CccceEEEEeecccchhhHHHHh
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNFEARMQA 1558 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~-rpv~l~i~i~~~~~~~~~~~~~~ 1558 (1665)
.+-..+..|...+|...|++++|||.+. ...++.++.... +..|.... .-.-+..++.....++.......
T Consensus 184 ----sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284|consen 184 ----SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred ----hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccCCcchHHHHH
Confidence 2778888888999999999999999987 335667765432 33332211 11112222222222222222111
Q ss_pred cChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000324 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (1665)
Q Consensus 1559 ~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~ 1638 (1665)
.....+..+... .+..++||||+....|+.+|..| ..-+..+.+
T Consensus 258 lklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L-----------------------------------~ssG~d~~~ 301 (980)
T KOG4284|consen 258 LKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHL-----------------------------------KSSGLDVTF 301 (980)
T ss_pred HHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHh-----------------------------------hccCCCeEE
Confidence 222233333333 45667999999999999999777 234566899
Q ss_pred EcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1639 LHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1639 ~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.|.|++.+|..+++.+++-..+|||.
T Consensus 302 ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 302 ISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred eccccchhHHHHHHHHhhhceEEEEEe
Confidence 999999999999999999999999984
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=275.93 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=184.0
Q ss_pred CCCCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
| .+|++|.+|++.++.+ ..+++++||||+|||.+|+.+++..+.. +. +++||+||++||.|+++.|++.
T Consensus 599 ~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 599 F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred C-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHh
Confidence 5 7999999999999875 2469999999999999999888766543 33 9999999999999999999976
Q ss_pred hcCCCCcEEEEEeCCCccchh--cc-----CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDLK--LL-----EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~~--~l-----~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~ 1486 (1665)
|+. .++++..++|..+...+ .+ ..++|||+||+.+ + ....+.+++++||||+|+++..
T Consensus 673 ~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~---~~v~~~~L~lLVIDEahrfG~~------- 737 (1147)
T PRK10689 673 FAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q---SDVKWKDLGLLIVDEEHRFGVR------- 737 (1147)
T ss_pred hcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h---CCCCHhhCCEEEEechhhcchh-------
Confidence 764 46888889887765422 11 2569999999643 2 2234678999999999998421
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHH
Q 000324 1487 IVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~ 1565 (1665)
....+ ..++.++|+++||||+.+ ...++. .+.....++...|..+ .++......+.. .....
T Consensus 738 ~~e~l----k~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~r-~~v~~~~~~~~~-----------~~~k~ 800 (1147)
T PRK10689 738 HKERI----KAMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPARR-LAVKTFVREYDS-----------LVVRE 800 (1147)
T ss_pred HHHHH----HhcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCCC-CCceEEEEecCc-----------HHHHH
Confidence 11222 345678999999999754 233332 2232333444444333 233333322210 11233
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCH
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~ 1645 (1665)
.+...+..+++++||||+++.++.++..|.... -+.+|+++||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~---------------------------------p~~~v~~lHG~m~q 847 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELV---------------------------------PEARIAIGHGQMRE 847 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---------------------------------CCCcEEEEeCCCCH
Confidence 444555667899999999999999997773211 14579999999999
Q ss_pred HHHHHHHHHHhcCCceEEEC
Q 000324 1646 TDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+|..++..|++|+++||||
T Consensus 848 ~eRe~im~~Fr~Gk~~VLVa 867 (1147)
T PRK10689 848 RELERVMNDFHHQRFNVLVC 867 (1147)
T ss_pred HHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-23 Score=267.62 Aligned_cols=263 Identities=22% Similarity=0.304 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHcCC-----CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1341 HFNPIQTQVFTVLYNTD-----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~-----dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.||++|.+|++.+..+- .|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++.+
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~LA~Q~~~~l~~l~- 334 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEILAEQHYENLKKLL- 334 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHHHHHHHHHHHHHH-
Confidence 59999999999998752 479999999999999999999987754 33 99999999999999999999544
Q ss_pred CCCCcEEEEEeCCCccchh-----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
...|+++..++|+.+...+ .+. .++|+|+||+.+.. ...+.+++++|+||+|+++... .
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q-------r 400 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ-------R 400 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH-------H
Confidence 4468999999999875321 222 47999999987632 2347789999999999985221 1
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCChHHHHHH-hcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n~~dl~~w-l~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i 1567 (1665)
..+ .....++++++||||+.+ +.++.. .+........-.|..+. ++...+.... . ....+..+
T Consensus 401 ~~l----~~~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~--~--------~~~~~~~i 464 (681)
T PRK10917 401 LAL----REKGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS--R--------RDEVYERI 464 (681)
T ss_pred HHH----HhcCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc--c--------HHHHHHHH
Confidence 111 122456889999999744 333322 23222222222233222 3333322111 0 12234455
Q ss_pred HHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh-cccEEEEcCCCCHH
Q 000324 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNKT 1646 (1665)
Q Consensus 1568 ~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gI~~~H~~m~~~ 1646 (1665)
...+..+++++|||+..+.++.+. +. .... + -+.|...+ ...|+++||+|++.
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~--~~-------------------~~~~----~-~~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLD--LQ-------------------SAEE----T-YEELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchh--HH-------------------HHHH----H-HHHHHHHCCCCcEEEEeCCCCHH
Confidence 555567889999999765443210 00 0000 0 01222222 36799999999999
Q ss_pred HHHHHHHHHhcCCceEEEC
Q 000324 1647 DQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1647 dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|..+++.|++|+++||||
T Consensus 519 eR~~i~~~F~~g~~~ILVa 537 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVA 537 (681)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999998
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=263.22 Aligned_cols=268 Identities=21% Similarity=0.307 Sum_probs=177.9
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
+| .||++|.+|++.++.+ ..|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHHHHHHHHHHHH
Confidence 46 7999999999999864 2368999999999999999999988765 33 899999999999999999995
Q ss_pred HhcCCCCcEEEEEeCCCccchh-----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHH
Q 000324 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1413 ~~~~~~~i~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
.+. ..|+++..++|+.+...+ .+. .++|||+||+.+.. ...+.+++++|+||+|+++... .
T Consensus 307 l~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q----r 374 (630)
T TIGR00643 307 LLA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ----R 374 (630)
T ss_pred Hhc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH----H
Confidence 554 458999999999876422 222 45999999987642 2346889999999999975321 1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHh-cccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHH
Q 000324 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl-~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~ 1564 (1665)
..+..... ....++++++|||+.+ +.++..+ +..........|..+ .++...+.... . ....+
T Consensus 375 ---~~l~~~~~-~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~--~--------~~~~~ 438 (630)
T TIGR00643 375 ---KKLREKGQ-GGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD--E--------KDIVY 438 (630)
T ss_pred ---HHHHHhcc-cCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc--h--------HHHHH
Confidence 11111110 0126789999999754 2233222 222212222222222 13333322111 1 02344
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHH-hcccEEEEcCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT-LRHGVGYLHEGL 1643 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~-l~~gI~~~H~~m 1643 (1665)
..+...+..+++++|||+....++.+... ..+... ..|.+. .+..|+++||+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~---------------------~a~~~~-----~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLK---------------------AAEALY-----ERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHH---------------------HHHHHH-----HHHHhhCCCCcEEEEeCCC
Confidence 55555656788999999987544322000 000000 112222 356799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEC
Q 000324 1644 NKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1644 ~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++.+|..+++.|++|+++||||
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVa 514 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVA 514 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999997
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=250.72 Aligned_cols=268 Identities=22% Similarity=0.335 Sum_probs=201.6
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1330 ~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
..+..+|. +..|+|-|.+++..++++++ +++.+|||+||++||++|.+-. .| -+|||.|..+|..++...
T Consensus 7 ~~L~~~fG-y~~FR~gQ~evI~~~l~g~d-~lvvmPTGgGKSlCyQiPAll~------~G--~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFG-YASFRPGQQEIIDALLSGKD-TLVVMPTGGGKSLCYQIPALLL------EG--LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhC-ccccCCCHHHHHHHHHcCCc-EEEEccCCCCcchHhhhHHHhc------CC--CEEEECchHHHHHHHHHH
Confidence 34556654 99999999999999999865 9999999999999999999832 34 799999999999999998
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchh-----ccCC--CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCch
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLK-----LLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~-----~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~ 1482 (1665)
++. .|+.+..+.+..+.+.+ .+.. -+++.-+||++..-.-. ....-..+.++|||||||+. .+|.
T Consensus 77 l~~-----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~--~~L~~~~i~l~vIDEAHCiS-qWGh 148 (590)
T COG0514 77 LEA-----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL--ELLKRLPISLVAIDEAHCIS-QWGH 148 (590)
T ss_pred HHH-----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH--HHHHhCCCceEEechHHHHh-hcCC
Confidence 883 26899999988776622 2333 48999999998542110 11114579999999999996 5567
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcC
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~ 1560 (1665)
.++.-..++..+...++ ++++++||||-++ ..|+.+-|+.....+|.-+. .|| +.........
T Consensus 149 dFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf-dRp-------------Ni~~~v~~~~ 213 (590)
T COG0514 149 DFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF-DRP-------------NLALKVVEKG 213 (590)
T ss_pred ccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC-CCc-------------hhhhhhhhcc
Confidence 88888888888887777 8889999999766 45888989887654444222 222 2222221111
Q ss_pred --hhHHHHHHH-HhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1561 --KPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1561 --k~~~~~i~~-~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
...+..+.. .....++.||||.||+.|+.+|..|. .-+..++
T Consensus 214 ~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~-----------------------------------~~g~~a~ 258 (590)
T COG0514 214 EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLR-----------------------------------KNGISAG 258 (590)
T ss_pred cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHH-----------------------------------HCCCceE
Confidence 111113332 11455679999999999999998883 2366799
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.|||||+..+|..+.+.|..+.++|+||
T Consensus 259 ~YHaGl~~~eR~~~q~~f~~~~~~iiVA 286 (590)
T COG0514 259 AYHAGLSNEERERVQQAFLNDEIKVMVA 286 (590)
T ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999999999999999998
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=242.06 Aligned_cols=268 Identities=20% Similarity=0.241 Sum_probs=175.4
Q ss_pred HHHHHHHHHHcCCC-cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC---CCc
Q 000324 1345 IQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG---LGM 1420 (1665)
Q Consensus 1345 iQ~qa~~~ll~~~d-nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~---~~i 1420 (1665)
+|+++|+++++++. +++++||||||||.||++|++. ... +++|++|+++|++|++++|++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~~~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------GEN--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------cCC--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999875 6899999999999999999983 123 78999999999999999999776432 367
Q ss_pred EEEEEeCCCccchhc-----------------------cCCCcEEEEChhhHHHHHHhhhccc------cCCCccEEEee
Q 000324 1421 RVVELTGETAMDLKL-----------------------LEKGQIIISTPEKWDALSRRWKQRK------YVQQVSLFIID 1471 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~-----------------------l~~~~IIV~TPe~l~~l~r~~~~~~------~l~~v~llViD 1471 (1665)
.+..++|++..+.+. ...++|+++||+.|..++++|.... .+.+++++|+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 788888874443111 2357899999999998888753222 36899999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHH--hccc----CCcEEecCC----------
Q 000324 1472 ELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEW--IGAT----SHGLFNFPP---------- 1533 (1665)
Q Consensus 1472 EaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~w--l~~~----~~~~~~f~~---------- 1533 (1665)
|+|.+.......+...+..+..+... ....+++++|||++.. +.+.+- +|.. ....+.|..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 99999865554555444555544332 3357999999999763 122221 1111 011111211
Q ss_pred -CCCcc--ceEEEEeecccchhhHHHHhcChhHHHHHHHHh--cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCccccc
Q 000324 1534 -GVRPV--PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (1665)
Q Consensus 1534 -~~rpv--~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l--~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~ 1608 (1665)
..||+ +++..+.. ........+ +.....+.+.+ .+++++||||+|++.|+.++..|...
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l----~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~----------- 295 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEEL----SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ----------- 295 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHH----HHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----------
Confidence 12322 33333322 111111111 11122222222 24678999999999999999877310
Q ss_pred ccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+..+||.+++.+|..+ ++++||||
T Consensus 296 ----------------------~~~~~~~~l~g~~~~~~R~~~------~~~~iLVa 324 (357)
T TIGR03158 296 ----------------------GLGDDIGRITGFAPKKDRERA------MQFDILLG 324 (357)
T ss_pred ----------------------CCCceEEeeecCCCHHHHHHh------ccCCEEEE
Confidence 022357889999999998654 47889987
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=255.18 Aligned_cols=311 Identities=25% Similarity=0.403 Sum_probs=231.4
Q ss_pred CCCCCCHHHHHHHH--HHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1338 GFKHFNPIQTQVFT--VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~--~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
|...+..+|..|+. .++ ++.|.+.++||+.|||+++++-+++..... .. .++.+.|..+.+.+-...+. .|.
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~--rr--~~llilp~vsiv~Ek~~~l~-~~~ 293 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR--RR--NVLLILPYVSIVQEKISALS-PFS 293 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH--hh--ceeEecceeehhHHHHhhhh-hhc
Confidence 57789999999984 465 678899999999999999999999887763 22 68899999999988888777 677
Q ss_pred CCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i 1494 (1665)
...|+.|..++|..+.. +..+.-++.|||.|+-+.+..+.-....+..+++|||||.|++++ .+|..+|.++..+.+.
T Consensus 294 ~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 77899999888766544 445666899999999988887765555688899999999999998 4599999999999887
Q ss_pred HhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcCh-------------
Q 000324 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK------------- 1561 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k------------- 1561 (1665)
.. ....|+||+|||++|..++..|+.. +.+....||+|+.-++..-.......++.....
T Consensus 373 ~~--~~~~~iIGMSATi~N~~lL~~~L~A-----~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 373 NL--ETSVQIIGMSATIPNNSLLQDWLDA-----FVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred cc--ccceeEeeeecccCChHHHHHHhhh-----hheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 54 3448899999999999999999984 345667799998766632222211112111110
Q ss_pred --hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhh------HhhhhHHHHHHHhc
Q 000324 1562 --PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF------IDNIQEEMLKATLR 1633 (1665)
Q Consensus 1562 --~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~------~~~i~d~~L~~~l~ 1633 (1665)
.....+.+.+..+.++||||++|+.|+.+|..+............ ++. .-++... ....-|..|+.++.
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~--~~~~~s~s~~lr~~~~~ld~Vl~~ti~ 522 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLG--LWELLSISNLLRRIPGILDPVLAKTIP 522 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhh--HHHHHHHHhHhhcCCcccchHHheecc
Confidence 111122233344566999999999999999888665543321111 110 0011111 11123567899999
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+||+|||+|++..+|+.|+..|++|.+.|++|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~a 554 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVA 554 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEe
Confidence 99999999999999999999999999999997
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=216.18 Aligned_cols=311 Identities=22% Similarity=0.281 Sum_probs=211.7
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|++.|..+-..++ +..+.+||.|-||||||......|-..+.+ +.++.+..|+...|-|++.++
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-----------G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-----------GGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-----------CCeEEEecCcccchHHHHHHH
Confidence 389999999877664 456779999999999999776666666543 558999999999999999999
Q ss_pred HHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~ 650 (1665)
+..|. ++.+..++||+...- .++++|+|..+ +.|.. +.++++||||+|...-.-.+.+...+...
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred HHhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHHH------hhccEEEEeccccccccCCHHHHHHHHHh
Confidence 99877 567888999876433 38899999885 44432 34789999999987544455566555543
Q ss_pred HHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCce--EEecCCC--ccccceEEEEeeecCchhHHHHHHHHHHHHH
Q 000324 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL--FYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726 (1665)
Q Consensus 651 ~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~--~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1665)
....--+|.||||.++ .+.+-+. ...+ ......| +|.|+...+....-.+...+. .+.-.++..
T Consensus 230 ------rk~~g~~IylTATp~k--~l~r~~~---~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~-kl~~kl~~~ 297 (441)
T COG4098 230 ------RKKEGATIYLTATPTK--KLERKIL---KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRN-KLPLKLKRW 297 (441)
T ss_pred ------hcccCceEEEecCChH--HHHHHhh---hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhc-cCCHHHHHH
Confidence 2345567999999764 2222221 1111 2222222 344444322211111111110 011122333
Q ss_pred HHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCC
Q 000324 727 VVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (1665)
Q Consensus 727 i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~ 805 (1665)
+..+.. +.|++||+++....+++|..|...... ..++..|+.
T Consensus 298 lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~-- 340 (441)
T COG4098 298 LEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE-- 340 (441)
T ss_pred HHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--
Confidence 333333 689999999999999999988664321 124555653
Q ss_pred HHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 806 ~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
..+|.+..+.|++|++++|++|.+|+|||.+|.+.|.+-|... .-++.+.++|++||+||.-....|..+.+
T Consensus 341 d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh--------~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 341 DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH--------RVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCc--------ccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 5678888999999999999999999999999999998864321 22477899999999999754455665555
Q ss_pred eC
Q 000324 886 TG 887 (1665)
Q Consensus 886 ~~ 887 (1665)
-.
T Consensus 413 H~ 414 (441)
T COG4098 413 HY 414 (441)
T ss_pred ec
Confidence 43
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=244.95 Aligned_cols=297 Identities=21% Similarity=0.276 Sum_probs=194.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
...++++|.+++..+... ....++++|||+|||.+++..+-.. ..+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------------cCCEEEEECcHHHHHHHHHH
Confidence 347999999999998884 5669999999999999997766543 12399999999999999988
Q ss_pred HHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhc-CCCccccceeEEEEecccccccCCchHHHHHHH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1665)
+...+.. +..++.+.|+...... ..|.|+|.. .+.+.. ......+..++||+||||++.... +..+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~q---tl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQ---TLARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhH---HHhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 7776542 2346666666543221 569999988 454431 111233468999999999986532 232332
Q ss_pred HHHHHHhhccCCee-EEEEcccCCC-----hHHHHHHHhccccCceEEecC-----CCccccceEEEEee--ecCc----
Q 000324 649 RTVRQIETTKEHIR-LVGLSATLPN-----YEDVALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGI--QVKK---- 711 (1665)
Q Consensus 649 r~~~~~~~~~~~~r-iV~lSATl~n-----~~dv~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~~--~~~~---- 711 (1665)
.+ .... ++|||||++- ..++...++ .-++.+.. ...-.|.....+.. ....
T Consensus 169 ~~--------~~~~~~LGLTATp~R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~ 236 (442)
T COG1061 169 LL--------SAAYPRLGLTATPEREDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREY 236 (442)
T ss_pred hh--------hcccceeeeccCceeecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHh
Confidence 22 1223 8999999762 122333332 00111110 00111211111111 1100
Q ss_pred --hhHHHH-------------------HHHH----HHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccc
Q 000324 712 --PLQRFQ-------------------LMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (1665)
Q Consensus 712 --~~~~~~-------------------~~~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~ 766 (1665)
...+.. ..+. .+...+..+..+.+++||+.+...+..++..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~--------- 307 (442)
T COG1061 237 AKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG--------- 307 (442)
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---------
Confidence 000000 0000 111111112135699999999999999988765432
Q ss_pred cccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecc
Q 000324 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (1665)
Q Consensus 767 ~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t 846 (1665)
++....+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 308 -----------------------------~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~-- 356 (442)
T COG1061 308 -----------------------------IVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII-- 356 (442)
T ss_pred -----------------------------ceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE--
Confidence 1345689999999999999999999999999999999999999999997
Q ss_pred cccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 847 QIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
-.|.. |...|+||+||.-|+
T Consensus 357 --~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 --LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred --eCCCC------cHHHHHHHhhhhccC
Confidence 55543 899999999999996
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=227.92 Aligned_cols=320 Identities=18% Similarity=0.250 Sum_probs=201.2
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHh---hccCCcEEEEEECCCcccHh---hhccccEEEeChhhHHHHHhhcCCCcccc
Q 000324 549 SNYKIVYVAPMKALVAEVVGNLSNR---LQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (1665)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~---~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~ 622 (1665)
+.+++|++-|.|+|+.|.++.+.++ .....++-..+.|+.....+ ...+++|+|+||++++.+..+.. ..+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~--~~lt 362 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL--VTLT 362 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc--eeee
Confidence 5678999999999999999966553 32223444456665544433 34689999999999865555443 4678
Q ss_pred ceeEEEEecccccccCCchHHHHHHHHHHHHHhhc---cCCeeEEEEcccCCCh--HHHHH-------HHhcccc----C
Q 000324 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT---KEHIRLVGLSATLPNY--EDVAL-------FLRVNLE----K 686 (1665)
Q Consensus 623 ~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~---~~~~riV~lSATl~n~--~dv~~-------~l~~~~~----~ 686 (1665)
+++++|+||++.++.. .+...+.|+..++.+. ....+.+.+|||+.-. ..+++ |...... .
T Consensus 363 ~crFlvlDead~lL~q---gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQ---GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eeEEEEecchhhhhhc---ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 8999999999998752 2445555655444332 3567889999998642 22332 2211100 0
Q ss_pred ceEEe--------cCCCccc--cc-------eEEEEe--eecCchhHHHHHH-HHHHHHHHHHHhCCCeEEEEecChhHH
Q 000324 687 GLFYF--------DNSYRPV--PL-------SQQYIG--IQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSRKET 746 (1665)
Q Consensus 687 ~~~~f--------~~~~rpv--~l-------~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vLVFv~sr~~~ 746 (1665)
.+..+ +.+|-.. ++ .+.... ............+ .+.+...+.++ ...++||||.|+.+|
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dc 518 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDC 518 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccc
Confidence 00000 1111100 00 000000 0011111111111 11222222222 356899999999999
Q ss_pred HHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEe
Q 000324 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (1665)
Q Consensus 747 ~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVa 826 (1665)
..+-+.+.+.+.. .+....+||...+.+|...++.|+.+.++.|||
T Consensus 519 DnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflic 564 (725)
T KOG0349|consen 519 DNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLIC 564 (725)
T ss_pred hHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEE
Confidence 9999998886532 144677899999999999999999999999999
Q ss_pred ccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC-CcHHHHH--Hh-----h
Q 000324 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRYYL--SL-----M 898 (1665)
Q Consensus 827 T~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~~~~~y~--~l-----l 898 (1665)
|+++|+|+|+..+.++|+-|.+-| ...|+||+||.||+- +-|.+|.++.. .++-.|- +- .
T Consensus 565 tdvaargldi~g~p~~invtlpd~----------k~nyvhrigrvgrae--rmglaislvat~~ekvwyh~c~srgr~c~ 632 (725)
T KOG0349|consen 565 TDVAARGLDITGLPFMINVTLPDD----------KTNYVHRIGRVGRAE--RMGLAISLVATVPEKVWYHWCKSRGRSCN 632 (725)
T ss_pred ehhhhccccccCCceEEEEecCcc----------cchhhhhhhccchhh--hcceeEEEeeccchheeehhhhccCCccc
Confidence 999999999999999999665544 446999999999975 77888877654 3332221 10 1
Q ss_pred cCCC---------ccccchhHhhHHHHHHHH
Q 000324 899 NQQL---------PIESQFVSKLADQLNAEI 920 (1665)
Q Consensus 899 ~~~~---------piES~l~~~l~d~lnaeI 920 (1665)
|..+ --|-+|++.+.||||--|
T Consensus 633 nt~l~e~~gc~iwyne~~llaeve~hln~ti 663 (725)
T KOG0349|consen 633 NTNLTEVRGCCIWYNEPNLLAEVEDHLNITI 663 (725)
T ss_pred CCccccccceEEEeCchhHHHHHHHhhccee
Confidence 1111 126677777788887544
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=264.39 Aligned_cols=265 Identities=19% Similarity=0.241 Sum_probs=169.6
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1331 LYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1331 ~~~~l~~---~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
.++.+|. |+ .|+|+|.++++.++.+++ ++++||||||||.+ .++++..+.. .+. ++|||+||++|+.|++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~d-v~i~ApTGsGKT~f-~l~~~~~l~~--~g~--~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGES-FAIIAPTGVGKTTF-GLVMSLYLAK--KGK--KSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCc-EEEEcCCCCCHHHH-HHHHHHHHHh--cCC--eEEEEeccHHHHHHHH
Confidence 4555664 34 899999999999998765 99999999999964 4555444433 233 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCcc--c-----hhcc--CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1408 RDWEIKFGQGLGMRVVELTGETAM--D-----LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1408 ~~~~~~~~~~~~i~v~~l~G~~~~--~-----~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
+.++ .++...++.+..+.|+... + ...+ ..++|+|+||+++..+... .....++++|+||||+++.
T Consensus 141 ~~l~-~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 141 EKLE-KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHH-HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhh
Confidence 9999 6766677888777776532 1 1122 2479999999998876552 2345699999999999875
Q ss_pred CC----------c---hhHHHHHHHHH-------------HHHhhc----CCCCeEEEEcccCCCh-HH---HHHHhccc
Q 000324 1479 QG----------G---PVLEVIVSRMR-------------YIASQV----ENKIRIVALSTSLANA-KD---LGEWIGAT 1524 (1665)
Q Consensus 1479 ~~----------g---~~~e~~~srl~-------------~i~~~~----~~~~riI~lSATl~n~-~d---l~~wl~~~ 1524 (1665)
+. | ..++.++..++ .+.... +...|++++|||+++. .. +.+.++
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~-- 293 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG-- 293 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce--
Confidence 21 1 12222332221 111111 1268999999999752 11 112221
Q ss_pred CCcEEecCCCCCc-cceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHH---HHHHHHHHHHhccc
Q 000324 1525 SHGLFNFPPGVRP-VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSSM 1600 (1665)
Q Consensus 1525 ~~~~~~f~~~~rp-v~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~---a~~la~~L~~~~~~ 1600 (1665)
|........ -.+... +.... . .......++..+ +.++||||+|++. |+.++..|
T Consensus 294 ----~~v~~~~~~~rnI~~~---yi~~~--~-----k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L------ 351 (1176)
T PRK09401 294 ----FEVGSPVFYLRNIVDS---YIVDE--D-----SVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYL------ 351 (1176)
T ss_pred ----EEecCcccccCCceEE---EEEcc--c-----HHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHH------
Confidence 111111000 011111 10000 0 111222233332 3579999999888 98888777
Q ss_pred CCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+..++.+||+| +| .++.|++|+++||||
T Consensus 352 -----------------------------~~~gi~v~~~hg~l---~~--~l~~F~~G~~~VLVa 382 (1176)
T PRK09401 352 -----------------------------EDLGINAELAISGF---ER--KFEKFEEGEVDVLVG 382 (1176)
T ss_pred -----------------------------HHCCCcEEEEeCcH---HH--HHHHHHCCCCCEEEE
Confidence 23466789999999 22 349999999999997
|
|
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=216.03 Aligned_cols=279 Identities=24% Similarity=0.365 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHhcCCccC-----CCCcCChhHHHHHHHHhccCCC---CCCCC-CC-ChHHHHHHHHHHHHcCCCCCCCc
Q 000324 1022 PTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-LE-EPSAKINVLLQAYISQLKLEGLS 1091 (1665)
Q Consensus 1022 ~~~~~~~ll~~~s~s~Ef-----~~i~~R~~E~~~l~~l~~~~~~---~~~~~-~~-~~~~K~~~Llqa~is~~~~~~~~ 1091 (1665)
|.|.+.-++-+||.|.|| +.+.-|+.+..++-+|+..++- .-++. .. .-+.|+.+||.||+||++|+.-.
T Consensus 9 p~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~dt 88 (520)
T KOG4434|consen 9 PRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESDT 88 (520)
T ss_pred chhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChhh
Confidence 566667888999999999 4578888888888888876553 22221 12 34789999999999999999889
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHHHc----------C--CHHHHHHHHHHHHHHHcccCCCCCcccccCCCCHHHHHHHH
Q 000324 1092 LTSDMVFITQSAGRLLRALFEIVLKR----------G--WAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 1159 (1665)
Q Consensus 1092 l~~D~~~i~~~a~rl~~a~~ei~~~~----------g--~~~~a~~~l~L~k~i~~~~W~~~~pL~Q~~~i~~~~~~~l~ 1159 (1665)
|.-|..||+..++||+..|+..+... . -.....+||.|+.|++||+|...|||.|+|||++.-++.+.
T Consensus 89 LEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~~ 168 (520)
T KOG4434|consen 89 LEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHLR 168 (520)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHHh
Confidence 99999999999999999998754221 1 13567889999999999999999999999999999999998
Q ss_pred hCC-C-CchhhccCChHHHhhhhcCc--hhhHHHHHHHhcCCcceEEEEEeecc---------CceEEEEEEEccC----
Q 000324 1160 KKD-F-AWERYYDLSPQELGELIRFP--KMGRTLHKFVHQFPKLILAAHVQPIT---------RTVLKVELTITPD---- 1222 (1665)
Q Consensus 1160 ~~~-~-~~~~l~~l~~~el~~ll~~~--~~~~~i~~~~~~~P~l~l~~~v~pit---------~~~l~v~l~i~~~---- 1222 (1665)
++- + +++++..|.++++..||++- ..-+.+...+..||++.++..-+.+. +.+++|.|++++.
T Consensus 169 KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~d 248 (520)
T KOG4434|consen 169 KKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLID 248 (520)
T ss_pred hhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEeccccC
Confidence 664 4 88999999999999999853 33488999999999999987765442 4577788887541
Q ss_pred --------------------------------------------------------------------------------
Q 000324 1223 -------------------------------------------------------------------------------- 1222 (1665)
Q Consensus 1223 -------------------------------------------------------------------------------- 1222 (1665)
T Consensus 249 ~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~k 328 (520)
T KOG4434|consen 249 PQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATEK 328 (520)
T ss_pred hHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhhh
Confidence
Q ss_pred -----------------------------------------------CccCC-------------------CCCCCccc-
Q 000324 1223 -----------------------------------------------FLWDD-------------------KVHGYVEP- 1235 (1665)
Q Consensus 1223 -----------------------------------------------~~w~~-------------------~~h~~~e~- 1235 (1665)
-+|.+ .||++++|
T Consensus 329 a~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFPe 408 (520)
T KOG4434|consen 329 ALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFPE 408 (520)
T ss_pred hhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCcc
Confidence 01221 18888877
Q ss_pred -----EEEEEEeCCCCeEEEEeeeeeeecccccceeEEEeeccCCCCCCceEEEEeeccccccccccccccc
Q 000324 1236 -----FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (1665)
Q Consensus 1236 -----~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSD~wl~~e~~~~vs~~ 1302 (1665)
||++|.|.++..++-..+..-+- .-.++..+.|+.|- .||.+.|.|.+-||+|+|.++..+..+.
T Consensus 409 EKqEwWW~Yi~drKsrtLlt~PyhV~tL-~d~eei~lkF~AP~-~pG~Ytytv~lrSDSYmg~dq~~~lKld 478 (520)
T KOG4434|consen 409 EKQEWWWLYIADRKSRTLLTMPYHVCTL-KDTEEIELKFPAPG-KPGNYTYTVFLRSDSYMGLDQIKPLKLD 478 (520)
T ss_pred hhhheeeeeeecccccceecchhhhhcc-cccceeEEeccCCC-CCCceEEEEEEecccccChhhccceeee
Confidence 99999999999988766643221 11578899999997 8999999999999999999998776553
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=236.50 Aligned_cols=254 Identities=17% Similarity=0.175 Sum_probs=159.3
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc-------
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD------- 1432 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~------- 1432 (1665)
++++||||||||++|++|++..+.. .... +++|++|+++|+.|+++++...|+. .++.++|.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 8999999999999999999988765 2334 9999999999999999999977764 345555543210
Q ss_pred --------------hhccCCCcEEEEChhhHHHHHHh-hhcc-ccC--CCccEEEeecccccCCCCchhHHHHHHHHHHH
Q 000324 1433 --------------LKLLEKGQIIISTPEKWDALSRR-WKQR-KYV--QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1433 --------------~~~l~~~~IIV~TPe~l~~l~r~-~~~~-~~l--~~v~llViDEaH~l~~~~g~~~e~~~srl~~i 1494 (1665)
...+..++|+|+||+++...+.. .... ..+ -..+++|+||+|.+.+..... +...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~---l~~~l~~l 151 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL---ILAVLEVL 151 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH---HHHHHHHH
Confidence 00123468999999998765443 1110 111 123899999999998643222 33333333
Q ss_pred HhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCC
Q 000324 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~ 1574 (1665)
. ..+.|++++|||+++ .+.+|+...............+.. ....+.+... .. ...........+......+
T Consensus 152 ~---~~~~~~i~~SATlp~--~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~l~~l~~~~~~~ 222 (358)
T TIGR01587 152 K---DNDVPILLMSATLPK--FLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKI--ES-DKVGEISSLERLLEFIKKG 222 (358)
T ss_pred H---HcCCCEEEEecCchH--HHHHHHhcCCCcccccCCCCcccc-ccccccceee--cc-ccccCHHHHHHHHHHhhCC
Confidence 2 347899999999973 355555332111000000000000 0000000000 00 0001112233344444567
Q ss_pred CCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHH---
Q 000324 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV--- 1651 (1665)
Q Consensus 1575 ~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v--- 1651 (1665)
+++||||+|+++|+.++..|.... ....+..+||+|++.+|..+
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~~ 269 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENA---------------------------------PEEEIMLLHSRFTEKDRAKKEAE 269 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhc---------------------------------CCCeEEEEECCCCHHHHHHHHHH
Confidence 899999999999999998874211 12358999999999999764
Q ss_pred -HHHHhcCCceEEEC
Q 000324 1652 -SALFEAGKIKICYR 1665 (1665)
Q Consensus 1652 -~~~F~~G~i~VLVC 1665 (1665)
++.|++|..+||||
T Consensus 270 ~~~~f~~~~~~ilva 284 (358)
T TIGR01587 270 LLEEMKKNEKFVIVA 284 (358)
T ss_pred HHHHhcCCCCeEEEE
Confidence 88999999999998
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=262.65 Aligned_cols=264 Identities=19% Similarity=0.191 Sum_probs=172.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
|| .|+++|.++++.++.+++ ++++||||||||++++++.+.... .+. ++|||+||++|+.|+++.++ .++..
T Consensus 77 G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~~~l~-~l~~~ 148 (1638)
T PRK14701 77 GF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTVEKIE-SFCEK 148 (1638)
T ss_pred CC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHHHHHH-HHHhh
Confidence 68 699999999999999876 999999999999987766654422 233 89999999999999999999 45544
Q ss_pred --CCcEEEEEeCCCccchh-----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC--------
Q 000324 1418 --LGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-------- 1480 (1665)
Q Consensus 1418 --~~i~v~~l~G~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-------- 1480 (1665)
.++++..++|+.+...+ .+. .++|+|+||+++....... . ..+++++|+||||+++.++
T Consensus 149 ~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~-~~~i~~iVVDEAD~ml~~~knid~~L~ 224 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---K-HLKFDFIFVDDVDAFLKASKNIDRSLQ 224 (1638)
T ss_pred cCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---h-hCCCCEEEEECceeccccccccchhhh
Confidence 35778889999876532 222 3699999999987655432 1 2679999999999997521
Q ss_pred ----chhHHH----HH---------------HHHHHHHhhcCCCCe-EEEEcccCCChHHHHHHhcccCCcEEecCCCCC
Q 000324 1481 ----GPVLEV----IV---------------SRMRYIASQVENKIR-IVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (1665)
Q Consensus 1481 ----g~~~e~----~~---------------srl~~i~~~~~~~~r-iI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~r 1536 (1665)
.+.+.. ++ .++......++...| ++.+|||++...+....+... -.|..... +
T Consensus 225 llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~--l~f~v~~~-~ 301 (1638)
T PRK14701 225 LLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL--LGFEVGSG-R 301 (1638)
T ss_pred cCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC--eEEEecCC-C
Confidence 222211 11 112222223344555 577999998755555555221 11222211 1
Q ss_pred ccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHH---HHHHHHHHHHhcccCCCcccccccCCc
Q 000324 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (1665)
Q Consensus 1537 pv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~---a~~la~~L~~~~~~~~~~~~~~l~~~~ 1613 (1665)
+ .+.-..+.+....... +.....++..+ +.++||||+|++. |+.++..|.
T Consensus 302 ~-~lr~i~~~yi~~~~~~------k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~------------------ 354 (1638)
T PRK14701 302 S-ALRNIVDVYLNPEKII------KEHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLL------------------ 354 (1638)
T ss_pred C-CCCCcEEEEEECCHHH------HHHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHH------------------
Confidence 1 1111111111111010 11222333332 4679999999886 477786662
Q ss_pred ccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+..+||+ |..+++.|++|+++||||
T Consensus 355 -----------------~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVa 384 (1638)
T PRK14701 355 -----------------EDGFKIELVSAK-----NKKGFDLFEEGEIDYLIG 384 (1638)
T ss_pred -----------------HCCCeEEEecch-----HHHHHHHHHcCCCCEEEE
Confidence 246678999995 999999999999999997
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=240.37 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=169.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
...|+++|.+|++.++.+++ .+++||||+|||+++...+ +.+.. ...+ ++|||+||++|+.|+.++++ .|....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~-~il~apTGsGKT~i~~~l~-~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~-~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNR-RLLNLPTSAGKSLIQYLLS-RYYLE-NYEG--KVLIIVPTTSLVTQMIDDFV-DYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCc-eEEEeCCCCCHHHHHHHHH-HHHHh-cCCC--eEEEEECcHHHHHHHHHHHH-Hhcccc
Confidence 35899999999999988554 8999999999999875533 33233 2233 89999999999999999998 555433
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
...+..+.|+.... ..++|+|+||+++....+ ..+.++++||+||||++.+. .++.++ ..+
T Consensus 186 ~~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~~-----~~~~~~~~iIvDEaH~~~~~---~~~~il-------~~~ 246 (501)
T PHA02558 186 REAMHKIYSGTAKD----TDAPIVVSTWQSAVKQPK-----EWFDQFGMVIVDECHLFTGK---SLTSII-------TKL 246 (501)
T ss_pred ccceeEEecCcccC----CCCCEEEeeHHHHhhchh-----hhccccCEEEEEchhcccch---hHHHHH-------Hhh
Confidence 34454555554332 457999999999864332 24678999999999999743 233333 333
Q ss_pred CCCCeEEEEcccCCChHH----HHHHhcccCCcEEecCC-----CCCccceEEEE--eeccc--------chhhHHHHh-
Q 000324 1499 ENKIRIVALSTSLANAKD----LGEWIGATSHGLFNFPP-----GVRPVPLEIHI--QGVDI--------TNFEARMQA- 1558 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n~~d----l~~wl~~~~~~~~~f~~-----~~rpv~l~i~i--~~~~~--------~~~~~~~~~- 1558 (1665)
++..+++|||||+.+... +..++|... +.+.. .....++.+.. ..++. ..+...+..
T Consensus 247 ~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~---~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 323 (501)
T PHA02558 247 DNCKFKFGLTGSLRDGKANILQYVGLFGDIF---KPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYI 323 (501)
T ss_pred hccceEEEEeccCCCccccHHHHHHhhCCce---EEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHH
Confidence 456789999999976431 223344211 11100 00001111111 01110 011111100
Q ss_pred cC-h----hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1559 MT-K----PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1559 ~~-k----~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
.. . .....+......+.+++|||+++++|+.++..|. ..+
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~-----------------------------------~~g 368 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLK-----------------------------------KVY 368 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHH-----------------------------------HcC
Confidence 01 1 1111122222356789999999999999997773 234
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+.++||+|+..+|..+++.|++|+.+||||
T Consensus 369 ~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 369 DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 56899999999999999999999999999986
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=254.78 Aligned_cols=270 Identities=17% Similarity=0.122 Sum_probs=170.4
Q ss_pred HHHHHhc--CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1331 LYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1331 ~~~~l~~--~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
.++..|. ....|+|+|.++++.++.|.+ ++++||||||||. |.+|++..+.. .+ ++++||+||++||.|+++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d-~vi~ApTGsGKT~-f~l~~~~~l~~--~g--~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDS-FAIIAPTGVGKTT-FGLAMSLFLAK--KG--KRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCe-EEEECCCCCCHHH-HHHHHHHHHHh--cC--CeEEEEeCHHHHHHHHHH
Confidence 3555554 345899999999999999776 9999999999997 55676665544 23 399999999999999999
Q ss_pred HHHHHhcCCCCcEE---EEEeCCCccchh-----cc-C-CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1409 DWEIKFGQGLGMRV---VELTGETAMDLK-----LL-E-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1409 ~~~~~~~~~~~i~v---~~l~G~~~~~~~-----~l-~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
.++ .+....++.+ +.++|+.+...+ .+ . .++|+|+||+++......+. .+++++|+||||.+++
T Consensus 140 ~l~-~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 140 KIS-SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLK 213 (1171)
T ss_pred HHH-HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhh
Confidence 999 5555555443 457888765532 12 2 37999999999887665421 1899999999999986
Q ss_pred CC----------ch---hHHHHHH---------------HHHHHHhhcCCCCe--EEEEcccC-CChHHHHHHhcccCCc
Q 000324 1479 QG----------GP---VLEVIVS---------------RMRYIASQVENKIR--IVALSTSL-ANAKDLGEWIGATSHG 1527 (1665)
Q Consensus 1479 ~~----------g~---~~e~~~s---------------rl~~i~~~~~~~~r--iI~lSATl-~n~~dl~~wl~~~~~~ 1527 (1665)
.+ |- .++.++. .+..+...++...| ++++|||+ +.... ..++.. ..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r~-ll- 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFRE-LL- 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHccc-cc-
Confidence 32 11 1222221 11122223344444 67789995 43211 111111 00
Q ss_pred EEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCch---HHHHHHHHHHHHhcccCCCc
Q 000324 1528 LFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR---KYVRLTAVDLMTYSSMDGDQ 1604 (1665)
Q Consensus 1528 ~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr---~~a~~la~~L~~~~~~~~~~ 1604 (1665)
.+....... .+.--.+.+..... . ...+..++..+ +.++||||+|+ +.|+.++..|.
T Consensus 291 ~~~v~~~~~--~~r~I~~~~~~~~~--~-----~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~--------- 350 (1171)
T TIGR01054 291 GFEVGGGSD--TLRNVVDVYVEDED--L-----KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLE--------- 350 (1171)
T ss_pred ceEecCccc--cccceEEEEEeccc--H-----HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHH---------
Confidence 111111111 11100111100000 0 11222333332 46799999999 99999997772
Q ss_pred ccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1605 KSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1605 ~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+..+..+||+|++ .+++.|++|+++||||
T Consensus 351 --------------------------~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVa 381 (1171)
T TIGR01054 351 --------------------------NHGVKAVAYHATKPK----EDYEKFAEGEIDVLIG 381 (1171)
T ss_pred --------------------------hCCceEEEEeCCCCH----HHHHHHHcCCCCEEEE
Confidence 245678999999973 6899999999999997
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=235.48 Aligned_cols=307 Identities=19% Similarity=0.242 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
.-|+=|..||..+... .. +=||||.-|-|||-+|+-|++..++. +..+.+++||--||+|-+++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----------GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----------GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----------CCeEEEEcccHHhHHHHHHH
Confidence 5689999999988643 22 45999999999999999999998865 45799999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchH
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1665)
|+++|+.++++|..+..-.+...+. ....+|||+|.- |+.+. ..+.+++|+||||=|+.+ -.
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kd---v~FkdLGLlIIDEEqRFG----Vk 731 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKD---VKFKDLGLLIIDEEQRFG----VK 731 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCC---cEEecCCeEEEechhhcC----cc
Confidence 9999999999999998765543321 247899999964 33333 357789999999999764 22
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCCChHHH-HHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHH
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv-~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 721 (1665)
-. ..++....++-++-||||.= +.-+ ....+... -.++. .+..+..|+..++..+...
T Consensus 732 ~K-------EkLK~Lr~~VDvLTLSATPI-PRTL~Msm~GiRd-lSvI~-TPP~~R~pV~T~V~~~d~~----------- 790 (1139)
T COG1197 732 HK-------EKLKELRANVDVLTLSATPI-PRTLNMSLSGIRD-LSVIA-TPPEDRLPVKTFVSEYDDL----------- 790 (1139)
T ss_pred HH-------HHHHHHhccCcEEEeeCCCC-cchHHHHHhcchh-hhhcc-CCCCCCcceEEEEecCChH-----------
Confidence 22 22233467899999999942 2222 12222210 11111 1222333444433322211
Q ss_pred HHHHHH-HHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEe
Q 000324 722 LCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800 (1665)
Q Consensus 722 ~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~ 800 (1665)
.+.+.+ .+...++|+-..+|..+..++.+..|++.-.+. .|++-
T Consensus 791 ~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa-----------------------------------rI~va 835 (1139)
T COG1197 791 LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEA-----------------------------------RIAVA 835 (1139)
T ss_pred HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCce-----------------------------------EEEEe
Confidence 122222 244558999888899999999999998865432 48889
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCce
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||.|+..+-+.++..|-+|..+|||||.+.+.|||+|+.+-+|- .+.. -+..++..|.-||.||.. ..|
T Consensus 836 HGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD-----~fGLsQLyQLRGRVGRS~--~~A 904 (1139)
T COG1197 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRGRVGRSN--KQA 904 (1139)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----eccc-----cccHHHHHHhccccCCcc--ceE
Confidence 99999999999999999999999999999999999999866554 3333 257899999999999965 889
Q ss_pred EEEEEeCCCc
Q 000324 881 EGIIITGHSE 890 (1665)
Q Consensus 881 ~~iil~~~~~ 890 (1665)
.||.++.+.+
T Consensus 905 YAYfl~p~~k 914 (1139)
T COG1197 905 YAYFLYPPQK 914 (1139)
T ss_pred EEEEeecCcc
Confidence 9999998744
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=240.46 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=174.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~ 1435 (1665)
++.+++++||||||||.++.++++..... .+ +++++.|+|++|.|+++++.+.++...|..|+...+..+ ..
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~---~~ 87 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN---KV 87 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---cc
Confidence 46679999999999999999999977632 33 899999999999999999987787767777776555422 22
Q ss_pred cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc-cCC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~-l~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
-...+|+|+||+++..++.. ...+.++++|||||+|. ..+ +.+ +.-++.+...++.+.|+|+||||++.
T Consensus 88 s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~------L~ll~~i~~~lr~dlqlIlmSATl~~ 158 (819)
T TIGR01970 88 SRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLG------LALALDVQSSLREDLKILAMSATLDG 158 (819)
T ss_pred CCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchH------HHHHHHHHHhcCCCceEEEEeCCCCH
Confidence 24579999999999877654 45689999999999994 443 321 22233344445778999999999976
Q ss_pred hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHh-cCCCCEEEEeCchHHHHHHHH
Q 000324 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAV 1592 (1665)
Q Consensus 1514 ~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~ 1592 (1665)
. .+.++++.. .++.. ..+..|++++........ .+. ......+...+ ...+.+|||||++.+++.++.
T Consensus 159 ~-~l~~~l~~~--~vI~~--~gr~~pVe~~y~~~~~~~---~~~---~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 159 E-RLSSLLPDA--PVVES--EGRSFPVEIRYLPLRGDQ---RLE---DAVSRAVEHALASETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred H-HHHHHcCCC--cEEEe--cCcceeeeeEEeecchhh---hHH---HHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 4 467777532 22322 224445554443221111 010 00111122221 235789999999999999998
Q ss_pred HHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1593 DLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1593 ~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.|..... .+..|..+||+|++.+|..+++.|++|+.+||||
T Consensus 228 ~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVA 268 (819)
T TIGR01970 228 QLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLA 268 (819)
T ss_pred HHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEe
Confidence 7742110 1345889999999999999999999999999997
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=242.10 Aligned_cols=249 Identities=17% Similarity=0.203 Sum_probs=173.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
+.+++++||||||||+++.++++..... .+ ++++++|+|++|.|+++.+.+.++...|..|+...++.+.. -
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~---~ 91 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV---G 91 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc---C
Confidence 4569999999999999999999865322 33 89999999999999999998778777788888777654321 2
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccccc-CC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI-GG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l-~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
...+|+|+||+++..++.. ...+.++++||+||+|.. .+ +. .+.-+..+...++.+.|+|+||||++..
T Consensus 92 ~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~~Dl------~L~ll~~i~~~lr~~lqlilmSATl~~~ 162 (812)
T PRK11664 92 PNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQADL------ALALLLDVQQGLRDDLKLLIMSATLDND 162 (812)
T ss_pred CCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCccccccch------HHHHHHHHHHhCCccceEEEEecCCCHH
Confidence 3458999999999877664 346899999999999963 22 22 2222334445567789999999999654
Q ss_pred HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHH
Q 000324 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVD 1593 (1665)
Q Consensus 1515 ~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~ 1593 (1665)
.+.++++.. .++.. ..+..|++.+....+.... .. ......+...+ ...+.+|||||++++++.++..
T Consensus 163 -~l~~~~~~~--~~I~~--~gr~~pV~~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 163 -RLQQLLPDA--PVIVS--EGRSFPVERRYQPLPAHQR---FD---EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred -HHHHhcCCC--CEEEe--cCccccceEEeccCchhhh---HH---HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 567776532 22222 2244455544432221111 10 01111222222 2357899999999999999988
Q ss_pred HHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|..... .+..|..+||+|++.+|..+++.|++|+.+||||
T Consensus 232 L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvA 271 (812)
T PRK11664 232 LASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLA 271 (812)
T ss_pred HHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEe
Confidence 842110 1244888999999999999999999999999997
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=209.13 Aligned_cols=177 Identities=25% Similarity=0.377 Sum_probs=140.8
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
++..+++.+.. |+..|+++|.++++.++++ .|+++++|||+|||++|.+|++..+.......+++++|++|+++|+.|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q 84 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLSG-RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ 84 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHH
Confidence 34456666665 7999999999999999985 559999999999999999999999988521234599999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCccc--hhcc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCch
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1406 ~~~~~~~~~~~~~~i~v~~l~G~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~ 1482 (1665)
+...+. .+....++++..++|+.+.. ...+ .+++|+|+||+++..++.+. ...+.+++++|+||+|.+.+..
T Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~l~~lIvDE~h~~~~~~-- 159 (203)
T cd00268 85 IAEVAR-KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG--KLDLSKVKYLVLDEADRMLDMG-- 159 (203)
T ss_pred HHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--CCChhhCCEEEEeChHHhhccC--
Confidence 999998 56655688999999987753 2233 37799999999998888763 3567899999999999987543
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+...+..+.+.++.+.+++++|||+++
T Consensus 160 ----~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 160 ----FEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ----hHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 222233333445668999999999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=230.30 Aligned_cols=319 Identities=19% Similarity=0.229 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
.|.|+|..+...++.. ...+|++-.+|.|||..+.+.+-..+.... ..+++||||. +|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 5899999998877654 346999999999999999666555443321 2379999997 8999999998776
Q ss_pred hccCCcEEEEEECCCccc-----HhhhccccEEEeChhhHHHHHhhc--CCCccccceeEEEEecccccccC---CchHH
Q 000324 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDN---RGPVL 643 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~-----~~~~~~~~IiV~TPekld~l~r~~--~~~~~l~~v~liIiDEaH~l~d~---rg~~l 643 (1665)
|. +.+..+.++.... .......+++|+|.+.+ .+.. .....-..+++||+||||++... ....+
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 63 4454444432111 01223578999998843 2211 00011235799999999999631 11122
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCC--hHHH---------------HHHHh-----------------ccc-c---
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YEDV---------------ALFLR-----------------VNL-E--- 685 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv---------------~~~l~-----------------~~~-~--- 685 (1665)
. .+..+. .....+++||||.-. .+++ ..|.. ..+ .
T Consensus 296 ~-~v~~La------~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~ 368 (956)
T PRK04914 296 Q-VVEQLA------EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDA 368 (956)
T ss_pred H-HHHHHh------hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHH
Confidence 2 222221 123467999999541 1111 11110 000 0
Q ss_pred -------------------------------------------CceEEecCCCcc---cc-ceEEEEeeecCchhH----
Q 000324 686 -------------------------------------------KGLFYFDNSYRP---VP-LSQQYIGIQVKKPLQ---- 714 (1665)
Q Consensus 686 -------------------------------------------~~~~~f~~~~rp---v~-l~~~~~~~~~~~~~~---- 714 (1665)
.+-+.|.....- .| ...+.+.+.......
T Consensus 369 ~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 369 LNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred HHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHH
Confidence 000011110000 00 000011111000000
Q ss_pred ---------------HHHHH------------HHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhcccccccc
Q 000324 715 ---------------RFQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (1665)
Q Consensus 715 ---------------~~~~~------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~ 767 (1665)
.+..+ .+.+.+ ++....+.++||||+++..+..++..|....
T Consensus 449 ~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~-~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~---------- 517 (956)
T PRK04914 449 VSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLID-FLKSHRSEKVLVICAKAATALQLEQALRERE---------- 517 (956)
T ss_pred HhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHH-HHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc----------
Confidence 00000 001111 1222336799999999999999998885421
Q ss_pred ccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCC--CCCeEEeccccccccCCCceEEEEec
Q 000324 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (1665)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g--~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (1665)
.+.+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||+
T Consensus 518 --------------------------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 518 --------------------------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred --------------------------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 12356679999999999999999974 6999999999999999999999999
Q ss_pred ccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 846 t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
||.|. ++..|.||+||+||.|. .|.+.++
T Consensus 571 ---fDlP~------nP~~~eQRIGR~~RiGQ--~~~V~i~ 599 (956)
T PRK04914 571 ---FDLPF------NPDLLEQRIGRLDRIGQ--KHDIQIH 599 (956)
T ss_pred ---ecCCC------CHHHHHHHhcccccCCC--CceEEEE
Confidence 77775 78889999999999984 4544433
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=228.47 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++.+ -|..++||+|||++|.+|++..+... ..+.+++|++.||.|.++.+...+
T Consensus 82 ~~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 445666544333 3322 48899999999999999999766432 248999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcCC---CccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+.++|+.+...+ ....++|+|+||+++ |.|..+... ......+.++||||||.+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 9999999999999876543 334789999999994 666554221 112367899999999976
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=205.99 Aligned_cols=182 Identities=21% Similarity=0.286 Sum_probs=143.0
Q ss_pred ChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccH
Q 000324 483 PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1665)
Q Consensus 483 p~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~r 560 (1665)
++.....+ .|+..|+++|.++++.+++ ++|++++||||+|||.+++++++..+..... ..+++++|++|++
T Consensus 7 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~~ 79 (203)
T cd00268 7 SPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPTR 79 (203)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCCH
Confidence 44444444 4789999999999999887 4679999999999999999999998876421 1356899999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEECCCcccHh--hh-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc
Q 000324 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~--~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
+|+.|+...+.......++++..++|+...... .. .+++|+|+||+++..+.++.. ..+..++++|+||+|.+.+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhhc
Confidence 999999999998877778999999998875432 22 378999999999865555443 4678899999999999876
Q ss_pred -CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhc
Q 000324 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (1665)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~ 682 (1665)
.++..+..++.+ ...+.+++++|||+++ ++..++..
T Consensus 158 ~~~~~~~~~~~~~-------l~~~~~~~~~SAT~~~--~~~~~~~~ 194 (203)
T cd00268 158 MGFEDQIREILKL-------LPKDRQTLLFSATMPK--EVRDLARK 194 (203)
T ss_pred cChHHHHHHHHHh-------CCcccEEEEEeccCCH--HHHHHHHH
Confidence 456666655553 3458999999999984 45555544
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=239.00 Aligned_cols=336 Identities=17% Similarity=0.207 Sum_probs=193.9
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
..++++|.+++..+. ++.++.|+++|||||||.+++..+.+.+... ...+||+++|+++|+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHH
Confidence 368999999998765 3456799999999999998755554443322 134899999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHh-hhccccEEEeChhhHHH-HHhhc--CCCccccceeEEEEeccccccc-CC--c--
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKWDI-ITRKS--GDRTYTQLVKLLIIDEIHLLHD-NR--G-- 640 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekld~-l~r~~--~~~~~l~~v~liIiDEaH~l~d-~r--g-- 640 (1665)
|.......+..+..+.+-..+... .....+|+|||..++.. +.... .....+..+++||+||||+-.. +. +
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 987532212122112111111111 12357899999998522 22111 1113467889999999998421 00 0
Q ss_pred ----hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEec-------C---CCc-cccceEEEE
Q 000324 641 ----PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------N---SYR-PVPLSQQYI 705 (1665)
Q Consensus 641 ----~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~-------~---~~r-pv~l~~~~~ 705 (1665)
.............+.. . +...||||||.. .....+++. + ++.+. + .+. |......+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~y-F-dA~~IGLTATP~--r~t~~~FG~-p---v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDY-F-DAVKIGLTATPA--LHTTEIFGE-P---VYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred hhccchhhhHHHHHHHHHhh-c-CccEEEEecCCc--cchhHHhCC-e---eEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 0001111222222221 1 356799999953 233344442 1 11110 0 000 111111000
Q ss_pred --eeecCc------------h------hH----HHHH---------HHHHHHHHHHHHh---CCCeEEEEecChhHHHHH
Q 000324 706 --GIQVKK------------P------LQ----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKT 749 (1665)
Q Consensus 706 --~~~~~~------------~------~~----~~~~---------~~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~ 749 (1665)
|+.... . .. .... .++.+.+.+.... +.+++||||.++.+|..+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 000000 0 00 0001 1112222232222 247999999999999999
Q ss_pred HHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCC-CeEEecc
Q 000324 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTA 828 (1665)
Q Consensus 750 a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i-~VLVaT~ 828 (1665)
+..|.+....... ..-...+..+||+++ ++..+++.|+++.. +|+|+++
T Consensus 715 ~~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd 764 (1123)
T PRK11448 715 VRLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD 764 (1123)
T ss_pred HHHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec
Confidence 9988765311100 000112445677775 56789999999887 6999999
Q ss_pred ccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCC-CceEEEEEe
Q 000324 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIIT 886 (1665)
Q Consensus 829 tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~ 886 (1665)
.+.+|+|+|.+.+||. +.+.. |...|+||+||+.|.-.+ .+-.++|+-
T Consensus 765 mL~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 765 LLTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999999997 67665 899999999999996432 233444443
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=198.43 Aligned_cols=185 Identities=22% Similarity=0.303 Sum_probs=154.2
Q ss_pred cchhHHHHHhc-CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
|++++++++-. ||.+|+.+|.+|+|....|-| |+.+|..|.|||.+|.++-|+.+.. -.+.+.++++|+|||||.|
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHH
Confidence 56678888877 999999999999999888777 9999999999999999999988876 3445689999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEeCCCccc--hhccCC-CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCc
Q 000324 1406 RYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1406 ~~~~~~~~~~~~-~~i~v~~l~G~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g 1481 (1665)
+.+++. +|+++ .++++..+.||.+.. ...+++ +||+|+||+++..+.|. ....+.+++.+|+||||.++++-.
T Consensus 126 i~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~lD 202 (387)
T KOG0329|consen 126 ISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQLD 202 (387)
T ss_pred HHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHHHH
Confidence 999998 88877 689999999998765 444444 49999999999999997 567899999999999998865321
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhc
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~ 1522 (1665)
.-..+..|.+.+|...|+..+|||++. .+-++..+.
T Consensus 203 -----MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFm 239 (387)
T KOG0329|consen 203 -----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFM 239 (387)
T ss_pred -----HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhh
Confidence 345566777788999999999999987 344554443
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=223.37 Aligned_cols=352 Identities=16% Similarity=0.171 Sum_probs=220.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--.+ +.+ -|.-..||+|||+++.+|++..... +..+-+++|+--||.+-++.+...+
T Consensus 80 ~~~dvQlig~l~l-~~G--~iaEm~TGEGKTLvA~l~a~l~al~-----------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEG--NIAEMKTGEGKTLTATLPVYLNALT-----------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHHH-hcC--CcccccCCCCCcHHHHHHHHHHHHc-----------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 5667776665443 333 3889999999999999999887765 3468899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEecccccc-c-CCch-----
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP----- 641 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l~-d-~rg~----- 641 (1665)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|..+. .+........+.||||||.++ | .|.|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999865543 3456899999999875 6555442 122234567889999999662 2 1211
Q ss_pred ------HHHHHHHHHHHHHhhc----------------cCCeeEEEEcc----------cCCC---hH--HHHHHHhccc
Q 000324 642 ------VLESIVARTVRQIETT----------------KEHIRLVGLSA----------TLPN---YE--DVALFLRVNL 684 (1665)
Q Consensus 642 ------~le~iv~r~~~~~~~~----------------~~~~riV~lSA----------Tl~n---~~--dv~~~l~~~~ 684 (1665)
.+-..+.++...+... ....+.|.++. .++| .+ .+..|+....
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 1111222222211110 01122233321 0111 01 1223321100
Q ss_pred ---------------cCceEEe----------------------------------------------------------
Q 000324 685 ---------------EKGLFYF---------------------------------------------------------- 691 (1665)
Q Consensus 685 ---------------~~~~~~f---------------------------------------------------------- 691 (1665)
...+..+
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 0000001
Q ss_pred -----------------cCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHH-HHhCCCeEEEEecChhHHHHHHHHH
Q 000324 692 -----------------DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAI 753 (1665)
Q Consensus 692 -----------------~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L 753 (1665)
-|..+|+.....--.+. .....++.+ +.+.+. .+..+.|+||||+|+..++.++..|
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~-~t~~~K~~a----l~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLY-PTLDSKFNA----VVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEE-cCHHHHHHH----HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 11112211100000000 001112222 222232 2345789999999999999999999
Q ss_pred HHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccc
Q 000324 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833 (1665)
Q Consensus 754 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~G 833 (1665)
.+.+.. ...+||++...++..+.+.++.|. |+|||+.++||
T Consensus 461 ~~~gi~-------------------------------------~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRG 501 (796)
T PRK12906 461 DEAGIP-------------------------------------HAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRG 501 (796)
T ss_pred HHCCCC-------------------------------------eeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCC
Confidence 886533 346699999888888888888886 99999999999
Q ss_pred cCCC---ceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc-H-H-----HHHHhh
Q 000324 834 VNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-R-----YYLSLM 898 (1665)
Q Consensus 834 VdlP---~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~-~-----~y~~ll 898 (1665)
.|++ ++. +||. ++.+. |...+.|+.|||||.| .+|.+..+++-++ + . .+.+++
T Consensus 502 tDI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~ 569 (796)
T PRK12906 502 TDIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFL 569 (796)
T ss_pred CCCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHH
Confidence 9995 788 9998 77665 7889999999999988 8899988887653 1 1 122232
Q ss_pred ------cCCCccccchhHhhHHHH
Q 000324 899 ------NQQLPIESQFVSKLADQL 916 (1665)
Q Consensus 899 ------~~~~piES~l~~~l~d~l 916 (1665)
....||++.+.....+..
T Consensus 570 ~~~~~~~~~~~i~~~~~~~~i~~a 593 (796)
T PRK12906 570 DRLGMNDDDQVIESRMITRQVESA 593 (796)
T ss_pred HHcCCCCCCCcccchHHHHHHHHH
Confidence 345788888876655543
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=227.23 Aligned_cols=401 Identities=21% Similarity=0.207 Sum_probs=263.2
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
...+|+-|+.++..+..+ ....++.+.||||||.+|+-+|-..+.++ ..+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-----------kqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-----------KQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-----------CEEEEEeccccchHHHHHH
Confidence 347899999999998766 46789999999999999999998888763 4799999999999999999
Q ss_pred HHHhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc--CCc
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRG 640 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d--~rg 640 (1665)
|+.+|+ .+|.+++++.+...+. ..+.+|+|+| ++.-...+.++++|||||=|--.- ..+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999885 7899999987765432 3578999999 333345688999999999996532 334
Q ss_pred hHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhcccc-CceEEecCCCc-cccceEEEEeeecCchhHHHHH
Q 000324 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE-KGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQL 718 (1665)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~-~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~ 718 (1665)
|.+. +|-.........++.+|+-|||. . +..|.++... ...+.+...+. ..+-...++.......... ..
T Consensus 333 prYh---ARdvA~~Ra~~~~~pvvLgSATP-S---LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~ 404 (730)
T COG1198 333 PRYH---ARDVAVLRAKKENAPVVLGSATP-S---LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RS 404 (730)
T ss_pred CCcC---HHHHHHHHHHHhCCCEEEecCCC-C---HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-cc
Confidence 4443 22223333456789999999994 4 4444444211 12333333333 2233444444332211110 01
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhc----------cc--
Q 000324 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM----------VK-- 785 (1665)
Q Consensus 719 ~~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~----------~~-- 785 (1665)
+...+++.+.+... +.|+|+|+|.|.-+-.+...=+..-..+...+..+..+.......+.++.. |.
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 44556666665554 789999999998776655544444444444444443333333333333221 11
Q ss_pred ------------cchhhhhcC-CcEEEecCCCCHH--HHHHHHHHHhCCCCCeEEeccccccccCCCceEEE--Eecccc
Q 000324 786 ------------SNDLKDLLP-YGFAIHHAGMTRG--DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQI 848 (1665)
Q Consensus 786 ------------~~~l~~ll~-~gv~~~Hagm~~~--dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~t~~ 848 (1665)
.+.|+.+++ ..|...-+..+.. .-+..++.|.+|+.+|||.|..++.|.|+|+++.| ++.+..
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhh
Confidence 234555553 4455555554433 24567889999999999999999999999999875 444444
Q ss_pred cCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhccccCh
Q 000324 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA 928 (1665)
Q Consensus 849 yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~~~ 928 (1665)
...+..|-.+-..+-+.|-+|||||.+ ..|.++|-|...+-..+..++++
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~~~---------------------------- 614 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALKRG---------------------------- 614 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHHhc----------------------------
Confidence 444444556778889999999999975 78999999988774444333222
Q ss_pred HHHHHHHHhhHHHHHhhcCCcccCCCc
Q 000324 929 KEACNWIGYTYLYIRMLRNPALYGLAP 955 (1665)
Q Consensus 929 ~~~~~wl~~t~~~~r~~~np~~y~~~~ 955 (1665)
|...|.....-.|+...-|.++-+..
T Consensus 615 -dy~~F~~~El~~Rk~~~~PPf~~l~~ 640 (730)
T COG1198 615 -DYEAFYEQELAERKELGLPPFSRLAA 640 (730)
T ss_pred -CHHHHHHHHHHHHHhcCCCChhhhee
Confidence 23334444445566777788876543
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=206.99 Aligned_cols=174 Identities=22% Similarity=0.251 Sum_probs=137.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1337 ~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
.+.-.++.+|.......+.+ |.|++.|||-|||++|.+-+...+... ++ ++|+++||+-|+.|.+..+.+.++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~--kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF--GG--KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc--CC--eEEEecCCchHHHHHHHHHHHHhC-
Confidence 34568899999999887764 799999999999999999999888872 33 899999999999999999985443
Q ss_pred CCCcEEEEEeCCCccch--hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHH
Q 000324 1417 GLGMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i 1494 (1665)
...-.++.++|....+. ..+..++|+|+||+.+.+-+.. ++..+.++.++|+||||+-.+.. .|-.+.....
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvGny--AYv~Va~~y~-- 157 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVGNY--AYVFVAKEYL-- 157 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccCcc--hHHHHHHHHH--
Confidence 34457899999998873 4678899999999998665554 67889999999999999875443 4444443222
Q ss_pred HhhcCCCCeEEEEcccCCCh----HHHHHHhcccC
Q 000324 1495 ASQVENKIRIVALSTSLANA----KDLGEWIGATS 1525 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSATl~n~----~dl~~wl~~~~ 1525 (1665)
....+++++|||||+.+. .++.+-||...
T Consensus 158 --~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~ 190 (542)
T COG1111 158 --RSAKNPLILGLTASPGSDLEKIQEVVENLGIEK 190 (542)
T ss_pred --HhccCceEEEEecCCCCCHHHHHHHHHhCCcce
Confidence 235688999999999873 35667777654
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-20 Score=236.69 Aligned_cols=267 Identities=22% Similarity=0.329 Sum_probs=199.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
|...|+|-|.+|+..++.|.+ ++|.+|||+||++||++|++ -..+ -.|||.|..+|+..+...+. .
T Consensus 261 g~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~------l~~g--itvVISPL~SLm~DQv~~L~-----~ 326 (941)
T KOG0351|consen 261 GHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPAL------LLGG--VTVVISPLISLMQDQVTHLS-----K 326 (941)
T ss_pred ccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccc------ccCC--ceEEeccHHHHHHHHHHhhh-----h
Confidence 689999999999999999888 99999999999999999987 1233 79999999999999887663 2
Q ss_pred CCcEEEEEeCCCccc-----hhccC----CCcEEEEChhhHHHHHHhhhccccCCC---ccEEEeecccccCCCCchhHH
Q 000324 1418 LGMRVVELTGETAMD-----LKLLE----KGQIIISTPEKWDALSRRWKQRKYVQQ---VSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~-----~~~l~----~~~IIV~TPe~l~~l~r~~~~~~~l~~---v~llViDEaH~l~~~~g~~~e 1485 (1665)
.++....+.|+.... .+.+. ..+|+..|||++...-+.......+.. +.++||||||++. .+|..++
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFR 405 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFR 405 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhccccc
Confidence 368888999987764 22233 338999999998653332222233444 9999999999996 4567788
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhH
Q 000324 1486 VIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~ 1563 (1665)
.-..++..+....+. +.+|+||||... ..|+..-|+.....++. .+..+..+...+..-.... .....
T Consensus 406 p~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~~~-------~~~~~ 475 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTDKD-------ALLDI 475 (941)
T ss_pred HHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccCcc-------chHHH
Confidence 888888777766554 899999999855 56999999988766544 3333334444443322100 00111
Q ss_pred HHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCC
Q 000324 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (1665)
Q Consensus 1564 ~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m 1643 (1665)
...+ ....+..++||||.+|+.|+.++..|. ..+...++||+||
T Consensus 476 ~~~~-~~~~~~~s~IIYC~sr~~ce~vs~~L~-----------------------------------~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 476 LEES-KLRHPDQSGIIYCLSRKECEQVSAVLR-----------------------------------SLGKSAAFYHAGL 519 (941)
T ss_pred HHHh-hhcCCCCCeEEEeCCcchHHHHHHHHH-----------------------------------HhchhhHhhhcCC
Confidence 1122 233677889999999999999998883 2446688999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEC
Q 000324 1644 NKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1644 ~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++.+|..|.+.|..|+++|+|+
T Consensus 520 ~~~~R~~Vq~~w~~~~~~VivA 541 (941)
T KOG0351|consen 520 PPKERETVQKAWMSDKIRVIVA 541 (941)
T ss_pred CHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999874
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=224.08 Aligned_cols=267 Identities=16% Similarity=0.119 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHcCCCcEEEECCCCChHHHH---------HHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTIC---------SEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1344 ~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~---------a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
.+|.++++.+.++++ ++++|+||||||.+ |++|.+..+.... .....++++++||+|||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gkd-vIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRKP-VVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCCC-EEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 589999999998776 99999999999997 4445555443211 112238999999999999999998855
Q ss_pred hcC--CCCcEEEEEeCCCccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHH
Q 000324 1414 FGQ--GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (1665)
Q Consensus 1414 ~~~--~~~i~v~~l~G~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~s 1489 (1665)
.+. ..+..+....|+.+.. ....+..+|+|+|++.. ...+.++++||+||||.....+ .. ++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~---------l~~L~~v~~VVIDEaHEr~~~~-Dl---lL~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT---------LNKLFDYGTVIIDEVHEHDQIG-DI---IIA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc---------ccccccCCEEEccccccCccch-hH---HHH
Confidence 542 2467788899988643 22334669999997531 1247889999999999886543 22 222
Q ss_pred HHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCCCccceEEEEeecccc-hhhH-HHHhcChhHHHH
Q 000324 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NFEA-RMQAMTKPTFTA 1566 (1665)
Q Consensus 1490 rl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~-~~~~-~~~~~~k~~~~~ 1566 (1665)
-++.+ .+...|+++||||++. ...+..+++.. ..+.... ....|++......... .... ............
T Consensus 313 llk~~---~~~~rq~ILmSATl~~dv~~l~~~~~~p--~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 313 VARKH---IDKIRSLFLMTATLEDDRDRIKEFFPNP--AFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHh---hhhcCEEEEEccCCcHhHHHHHHHhcCC--cEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 22222 1223589999999974 55677777632 2333322 1123444333211100 0000 000111112222
Q ss_pred HHHHh-cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCH
Q 000324 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1567 i~~~l-~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~ 1645 (1665)
+.... ...+++||||+++.+|+.++..|.... -+..+..+||+|++
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCH
Confidence 32221 134679999999999999997773210 13558899999998
Q ss_pred HHHHHHHHHH-hcCCceEEEC
Q 000324 1646 TDQEVVSALF-EAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F-~~G~i~VLVC 1665 (1665)
. ..+++.| ++|+.+||||
T Consensus 434 ~--eq~l~~ff~~gk~kILVA 452 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIIS 452 (675)
T ss_pred H--HHHHHHHhccCceeEEec
Confidence 5 4566676 7999999997
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=201.96 Aligned_cols=285 Identities=19% Similarity=0.303 Sum_probs=207.2
Q ss_pred CCCCCcccccchhHHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1318 ~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
+-..+|++.-...++...|. ...|+|.|..++++.+.+.+ +++..|||.||++||.||.| ..++ -+|+|+
T Consensus 72 dkd~fpws~e~~~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal------~adg--~alvi~ 141 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPAL------CADG--FALVIC 141 (695)
T ss_pred ccCCCCCchHHHHHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHH------hcCC--ceEeec
Confidence 44567777777777888776 88999999999999999887 99999999999999999998 3455 899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch-h-----cc---CCCcEEEEChhhHHH---HHHhhhccccCCCc
Q 000324 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL-K-----LL---EKGQIIISTPEKWDA---LSRRWKQRKYVQQV 1465 (1665)
Q Consensus 1398 PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~-~-----~l---~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v 1465 (1665)
|...|++++.-.++ .+ |+....+....+... + +. ..-.+|..||+++.. ++.+.........+
T Consensus 142 plislmedqil~lk-ql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLK-QL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHH-Hh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999999888777 33 566666666655431 1 11 123799999999854 44444444556789
Q ss_pred cEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCcEEecCCCCCccceEEE
Q 000324 1466 SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543 (1665)
Q Consensus 1466 ~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~ 1543 (1665)
.++-+||+|+... +|..++.-.+.+.-+.+++ ++..++||+||-.| -.|....++... .|.|........+...
T Consensus 217 ~~iaidevhccsq-wghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQ-WGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYE 292 (695)
T ss_pred EEEeecceeehhh-hCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeE
Confidence 9999999999864 4455555555555555565 47889999999877 345555665543 3555555544455555
Q ss_pred EeecccchhhHHHHhcChhHHHHHHHHh---cCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhH
Q 000324 1544 IQGVDITNFEARMQAMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI 1620 (1665)
Q Consensus 1544 i~~~~~~~~~~~~~~~~k~~~~~i~~~l---~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 1620 (1665)
+..-+... ......|...+ -.+...||||-|++.|+.++..|
T Consensus 293 v~qkp~n~---------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al-------------------------- 337 (695)
T KOG0353|consen 293 VRQKPGNE---------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL-------------------------- 337 (695)
T ss_pred eeeCCCCh---------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH--------------------------
Confidence 54333221 11122222222 34567999999999999999888
Q ss_pred hhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1621 ~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+...+.||+.|.+.||.-+.+.|..|+|+|+|+
T Consensus 338 ---------kn~gi~a~~yha~lep~dks~~hq~w~a~eiqviva 373 (695)
T KOG0353|consen 338 ---------KNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVA 373 (695)
T ss_pred ---------HhcCccccccccccCccccccccccccccceEEEEE
Confidence 234555789999999999999999999999999984
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=197.63 Aligned_cols=158 Identities=30% Similarity=0.458 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000324 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (1665)
||+|.++++.++ ++++++++||||+|||+++++++++.+... . ..+++|++|+++|+.|+++++...+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~--------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG-K--------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S--------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC-C--------CceEEEEeecccccccccccccccccc
Confidence 689999999998 557799999999999999999999988764 1 238999999999999999999999887
Q ss_pred CCcEEEEEECCCcccHh---hh-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHH
Q 000324 577 YDVKVRELSGDQTLTRQ---QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (1665)
Q Consensus 577 ~gi~V~~ltGd~~~~~~---~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~ 651 (1665)
.++++..++|+...... .+ .+++|+|+||+++..+.+.... .+.++++||+||+|.+.+ .++..+..++.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred cccccccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc
Confidence 78899999998875422 22 4699999999998666665332 455599999999999987 45665665555432
Q ss_pred HHHhhccCCeeEEEEcccCC
Q 000324 652 RQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 652 ~~~~~~~~~~riV~lSATl~ 671 (1665)
. ..+.++|++|||++
T Consensus 149 ----~-~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 149 ----R-FKNIQIILLSATLP 163 (169)
T ss_dssp ----T-TTTSEEEEEESSST
T ss_pred ----C-CCCCcEEEEeeCCC
Confidence 2 33689999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=194.10 Aligned_cols=158 Identities=30% Similarity=0.521 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
||+|.++++.++. +.++++.||||+|||+++.++++..+.+. ... +++|++|+++|+.|+++.+.+.+. ..+.++
T Consensus 1 t~~Q~~~~~~i~~-~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~-~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-GKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFS-NTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTT-TTTSSE
T ss_pred CHHHHHHHHHHHc-CCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeeccccccccccccccccc-cccccc
Confidence 6999999999995 55699999999999999999999999884 334 999999999999999999995544 467889
Q ss_pred EEEeCCCccc---hhcc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHHHHHHHHhh
Q 000324 1423 VELTGETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1423 ~~l~G~~~~~---~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~~i~~~ 1497 (1665)
..++|+.+.+ ...+ .+++|+|+||+++..+.+.+.. .+.++++||+||+|.+.... +..+..++..+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~----~ 149 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK----R 149 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH----T
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc----C
Confidence 9999988744 2233 4689999999999998887332 55669999999999997642 333333333321 1
Q ss_pred cCCCCeEEEEcccCC
Q 000324 1498 VENKIRIVALSTSLA 1512 (1665)
Q Consensus 1498 ~~~~~riI~lSATl~ 1512 (1665)
..+.+++++|||++
T Consensus 150 -~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 -FKNIQIILLSATLP 163 (169)
T ss_dssp -TTTSEEEEEESSST
T ss_pred -CCCCcEEEEeeCCC
Confidence 23689999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=202.03 Aligned_cols=269 Identities=19% Similarity=0.258 Sum_probs=185.1
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHF-NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1331 ~~~~l~~~f~~~-~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
.+..+|. +..| ++.|.+|+.++..++.+|.|++|||+||++||.||.|- .++ ..|++.|..+|+.++.+.
T Consensus 10 aLKK~FG-h~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------~~g--ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 10 ALKKLFG-HKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------HGG--ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHhC-chhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------hCC--eEEEehHHHHHHHHHHHH
Confidence 4555554 5555 89999999999999988999999999999999999983 244 899999999999999998
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchh--------c-cCCCcEEEEChhhHHH-----HHHhhhccccCCCccEEEeecccc
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLK--------L-LEKGQIIISTPEKWDA-----LSRRWKQRKYVQQVSLFIIDELHL 1475 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~--------~-l~~~~IIV~TPe~l~~-----l~r~~~~~~~l~~v~llViDEaH~ 1475 (1665)
+. ++ .+.+..+.+..+...+ . -..-.++..|||+... +++... .-..+.++|+||||+
T Consensus 81 L~-~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~---~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 81 LK-RL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA---NRDVLRYIVVDEAHC 152 (641)
T ss_pred HH-hc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh---hhceeeeEEechhhh
Confidence 88 33 3566667766655422 1 1123799999998632 333222 234589999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC--hHHHHHHhcccCCc-EEecCCCCCccceEEEEeecccchh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHG-LFNFPPGVRPVPLEIHIQGVDITNF 1552 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n--~~dl~~wl~~~~~~-~~~f~~~~rpv~l~i~i~~~~~~~~ 1552 (1665)
+. .+|..++.-.-++..+.+.++ .+..++|+||-.. .+|+..-|...... +|. .|..|..- |-..++
T Consensus 153 VS-QWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~NL-------FYD~~~ 222 (641)
T KOG0352|consen 153 VS-QWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDNL-------FYDNHM 222 (641)
T ss_pred Hh-hhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhcc-Ccchhhhh-------hHHHHH
Confidence 96 445666665666667766654 7778999999655 35777777654322 222 23333211 100111
Q ss_pred hHHHHhcChhHHHHHH----HHhc-----------CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccch
Q 000324 1553 EARMQAMTKPTFTAIV----QHAK-----------NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (1665)
Q Consensus 1553 ~~~~~~~~k~~~~~i~----~~l~-----------~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (1665)
.. .....+..+. ..+. ..+-.||||.||.+|+.+|..|
T Consensus 223 K~----~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l----------------------- 275 (641)
T KOG0352|consen 223 KS----FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML----------------------- 275 (641)
T ss_pred HH----HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh-----------------------
Confidence 11 1111111111 1111 1233899999999999999777
Q ss_pred hhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
...+.+...||+||...+|..|.+.|.+|++-|++.
T Consensus 276 ------------~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 276 ------------EIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred ------------hhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 445667788999999999999999999999999873
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-19 Score=229.87 Aligned_cols=328 Identities=19% Similarity=0.247 Sum_probs=201.9
Q ss_pred CCHHHHHHHHHHHcC--CC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 496 LNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~--~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
..+.|..++..+... .. .+++.||||+|||.+++.+.+..+..... ...+++|+.|++++++++++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHHh
Confidence 478999999887654 23 68999999999999999998887765311 356999999999999999999998
Q ss_pred hhccCCcEEEEEECCCcccH----hh-------------hccccEEEeChhhHHH-HHhhcCCCc-cccceeEEEEeccc
Q 000324 573 RLQMYDVKVRELSGDQTLTR----QQ-------------IEETQIIVTTPEKWDI-ITRKSGDRT-YTQLVKLLIIDEIH 633 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~----~~-------------~~~~~IiV~TPekld~-l~r~~~~~~-~l~~v~liIiDEaH 633 (1665)
.++..++....+.|.....- .. ..-..++++||-.+-. ......... ..=..+++|+||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 77654433332333222110 00 0123455566654322 111111110 00123789999999
Q ss_pred ccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccC-ceEEecCCCccccceEEEEeeecCch
Q 000324 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKP 712 (1665)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~ 712 (1665)
.+.++. .+ .++..+.... ...+.++|++|||+|.. +.+.+...... ........ .++...... +..+..
T Consensus 349 ~~~~~~--~~-~~l~~~i~~l--~~~g~~ill~SATlP~~--~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~-~~~~~~ 418 (733)
T COG1203 349 LYADET--ML-AALLALLEAL--AEAGVPVLLMSATLPPF--LKEKLKKALGKGREVVENAK--FCPKEDEPG-LKRKER 418 (733)
T ss_pred hhcccc--hH-HHHHHHHHHH--HhCCCCEEEEecCCCHH--HHHHHHHHHhcccceecccc--ccccccccc-cccccc
Confidence 998763 12 2222233322 23478899999999963 33333322111 11111111 111111000 000000
Q ss_pred hHHHHHHHHHHHHHHH-HHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhh
Q 000324 713 LQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (1665)
Q Consensus 713 ~~~~~~~~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (1665)
..............+. ....+++++|-|||.+.|.+++..|+....
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--------------------------------- 465 (733)
T COG1203 419 VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--------------------------------- 465 (733)
T ss_pred hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---------------------------------
Confidence 0000000000111122 223378999999999999999999987642
Q ss_pred hcCCcEEEecCCCCHHHHHHHHHHH----hCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhh
Q 000324 792 LLPYGFAIHHAGMTRGDRQLVEDLF----GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1665)
Q Consensus 792 ll~~gv~~~Hagm~~~dR~~v~~~F----~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr 867 (1665)
.+..+||.+...||...++.+ +.+...|+|||.+.+.|||+. .+++|- ++. ++.+++||
T Consensus 466 ----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLIQR 528 (733)
T COG1203 466 ----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLIQR 528 (733)
T ss_pred ----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHHHH
Confidence 267789999999999888864 457889999999999999996 666663 322 67889999
Q ss_pred hcccCCCCCCCceEEEEEeCCCc
Q 000324 868 LGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
+||++|-|.+..|..++......
T Consensus 529 ~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 529 AGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHhhcccccCCceeEeecccC
Confidence 99999998766788777766543
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-18 Score=225.52 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=123.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
.-.++++|.+++..++.+ |+++++|||+|||++|.+++...+.. +.+ ++|||+||++|+.|+...+++.++ ..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~-~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK--KGG--KVLILAPTKPLVEQHAEFFRKFLN-IP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh--CCC--eEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 457899999999988875 79999999999999999999988743 344 999999999999999999985443 33
Q ss_pred CcEEEEEeCCCccch--hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHh
Q 000324 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~ 1496 (1665)
+.++..++|+.+.+. ..+..++|+|+||+.+...+.. .+..+.+++++|+||||++.+..+ +..+.....
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~~---- 157 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAERYH---- 157 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHHHH----
Confidence 457888999877653 3566889999999998665433 345678899999999999865432 222332221
Q ss_pred hcCCCCeEEEEcccCCC
Q 000324 1497 QVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1497 ~~~~~~riI~lSATl~n 1513 (1665)
......++++||||+..
T Consensus 158 ~~~~~~~il~lTaTP~~ 174 (773)
T PRK13766 158 EDAKNPLVLGLTASPGS 174 (773)
T ss_pred hcCCCCEEEEEEcCCCC
Confidence 22456789999999854
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=212.77 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+ . +..+-+++|+..||.|.++.+...
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~-----------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNAL-T-----------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHH-c-----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 456677655543 3332 48899999999999999996 444 2 123669999999999999999999
Q ss_pred hccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 574 LQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
+..+|++|+.++|+.+...+ ..-.++|+++||..+ |.+..+.. .....+.+.++||||||.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 99999999999998776543 334689999999996 66644431 1124567899999999976
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=220.34 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=186.8
Q ss_pred CCCCHHHHHHHHHHHcC--CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~--~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
..+++.|.++++.+.++ ..++++.||||||||.+|+.++...+.. +. ++||++|+++|+.|+++.+++.|+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~fg-- 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARFG-- 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC--
Confidence 36999999999999874 5669999999999999999888777654 33 899999999999999999997664
Q ss_pred CCcEEEEEeCCCccchh------cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC--CchhHHHHH
Q 000324 1418 LGMRVVELTGETAMDLK------LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--GGPVLEVIV 1488 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~~~------~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~--~g~~~e~~~ 1488 (1665)
.++..++|+.+...+ .. ..++|||+|++.+. ..+.++++|||||+|..+-. .++.|..
T Consensus 216 --~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~-- 282 (679)
T PRK05580 216 --APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA-- 282 (679)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcH--
Confidence 579999998776422 11 34699999997653 34678999999999977532 2443311
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCC--CCccceEEEEeecccchhhHHHHhcChhHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~--~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~ 1566 (1665)
..+.... ....+.++|++|||++ .+.+..-. ......+..... .++.| .+.+..............+....+..
T Consensus 283 r~va~~r-a~~~~~~~il~SATps-~~s~~~~~-~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 283 RDLAVVR-AKLENIPVVLGSATPS-LESLANAQ-QGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHHHHHH-hhccCCCEEEEcCCCC-HHHHHHHh-ccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHH
Confidence 1111111 2246789999999964 33222211 111222222211 11122 22222221100000011345667778
Q ss_pred HHHHhcCCCCEEEEeCchHHHHHHHHHHHH------------------------hcccCCCcccccccCCcccchh---h
Q 000324 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMT------------------------YSSMDGDQKSAFLLWPAEEVEP---F 1619 (1665)
Q Consensus 1567 i~~~l~~~~~~IVFv~sr~~a~~la~~L~~------------------------~~~~~~~~~~~~l~~~~~~l~~---~ 1619 (1665)
+.+.+..++++|||+|+|..+-.+.-.-+. +|...........+|....+.. -
T Consensus 359 i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G 438 (679)
T PRK05580 359 IKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPG 438 (679)
T ss_pred HHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeecc
Confidence 888888888999999997654332222211 1111110000011222222222 1
Q ss_pred HhhhhHHHHHHHh-cccEEEEcCCCC--HHHHHHHHHHHhcCCceEEEC
Q 000324 1620 IDNIQEEMLKATL-RHGVGYLHEGLN--KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1620 ~~~i~d~~L~~~l-~~gI~~~H~~m~--~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+++. +.|+..+ +..|..+|+++. ..+|..+++.|++|+++|||+
T Consensus 439 ~e~~~-e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVg 486 (679)
T PRK05580 439 TERLE-EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIG 486 (679)
T ss_pred HHHHH-HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEE
Confidence 22222 2334433 568999999987 467999999999999999986
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-17 Score=204.77 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=107.8
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 492 g~~~l---~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
||..+ +|+|.++++.++.+.+ +++.|+||+|||++|.+|++..+... ..+++|+|++.||.|.++
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g-----------~~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTG-----------KPVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhc-----------CCeEEEeCCHHHHHHHHH
Confidence 56655 9999999999888755 99999999999999999999877542 137889999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhh-hccccEEEeChhhH--HHHHhhcCCCc----cccceeEEEEeccccc
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~~~~----~l~~v~liIiDEaH~l 635 (1665)
.+....+.+|++|+.++|+.....+. .-.++|+|+||+++ |.+.++..... ....+.++||||||.+
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 99999888999999999998877653 33699999999997 66655432211 2245689999999976
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=206.46 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++. .-|..++||.|||++|.+|++...... ..+.+|+|+..||.+.++.+...+
T Consensus 82 ~~ydVQliGgl~-L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g-----------~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMV-LDS--NRIAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchH-hcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345555433322 333 258899999999999999998766542 249999999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHhhh-ccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEecccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~-~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l~ 636 (1665)
..+|++|+.++|+.+...... -.++|+++||..+ |.|..+.. .......+.++||||||.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999887644333 3799999999995 76655422 12234678899999999764
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=209.05 Aligned_cols=260 Identities=14% Similarity=0.239 Sum_probs=164.0
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~--dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
..++|+|.+++..++..+ .+.++++|||+|||++++.++.. +. + ++|||||+.+|+.|+.+.+. +|...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~-----k--~tLILvps~~Lv~QW~~ef~-~~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VK-----K--SCLVLCTSAVSVEQWKQQFK-MWSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hC-----C--CEEEEeCcHHHHHHHHHHHH-HhcCC
Confidence 468999999999998533 46899999999999999766542 22 2 79999999999999999999 55444
Q ss_pred CCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhh------ccccCCCccEEEeecccccCCCCchhHHHHHHHH
Q 000324 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK------QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~------~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl 1491 (1665)
....+..++|+.... .....+|+|+|...+....++.. ....-...++||+||||++.. +.+..++
T Consensus 325 ~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il--- 396 (732)
T TIGR00603 325 DDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVL--- 396 (732)
T ss_pred CCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHH---
Confidence 445677888864332 22346899999987653222110 011124678999999999953 2333333
Q ss_pred HHHHhhcCCCCeEEEEcccCCChH----HHHHHhcccCCcEEecCC-------CCCccc-eEEEEeecccch--------
Q 000324 1492 RYIASQVENKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPP-------GVRPVP-LEIHIQGVDITN-------- 1551 (1665)
Q Consensus 1492 ~~i~~~~~~~~riI~lSATl~n~~----dl~~wl~~~~~~~~~f~~-------~~rpv~-l~i~i~~~~~~~-------- 1551 (1665)
..+. ....+|||||+...+ ++...+|. .+|.... ..-++. .++.+. .+...
T Consensus 397 ----~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP---~vye~~~~eLi~~G~LA~~~~~ev~v~-~t~~~~~~yl~~~ 467 (732)
T TIGR00603 397 ----TIVQ-AHCKLGLTATLVREDDKITDLNFLIGP---KLYEANWMELQKKGFIANVQCAEVWCP-MTPEFYREYLREN 467 (732)
T ss_pred ----HhcC-cCcEEEEeecCcccCCchhhhhhhcCC---eeeecCHHHHHhCCccccceEEEEEec-CCHHHHHHHHHhc
Confidence 2222 334699999997533 22222332 2222210 111111 111111 11100
Q ss_pred --hhHHHHhcChhHHHH---HHH-HhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhH
Q 000324 1552 --FEARMQAMTKPTFTA---IVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (1665)
Q Consensus 1552 --~~~~~~~~~k~~~~~---i~~-~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (1665)
.......|+...+.. ++. +...+.++||||.+..++..++..|
T Consensus 468 ~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------- 516 (732)
T TIGR00603 468 SRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------- 516 (732)
T ss_pred chhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-------------------------------
Confidence 111223344333333 222 2236678999999999888887544
Q ss_pred HHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcC-CceEEEC
Q 000324 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKICYR 1665 (1665)
Q Consensus 1626 ~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G-~i~VLVC 1665 (1665)
++.++||++++.+|..+++.|++| .+++|||
T Consensus 517 ---------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 517 ---------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred ---------CCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 356899999999999999999975 8899885
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=205.57 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=125.6
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1334 ALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1334 ~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
..|...-.++.+|.+.....+ ..|+||++|||+|||.+|...++.++... +.+ ++|+++|++-|+.|+...+. .
T Consensus 55 ~~~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-p~~--KiVF~aP~~pLv~QQ~a~~~-~ 128 (746)
T KOG0354|consen 55 WIYPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR-PKG--KVVFLAPTRPLVNQQIACFS-I 128 (746)
T ss_pred ccccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcC-Ccc--eEEEeeCCchHHHHHHHHHh-h
Confidence 334456689999999999988 56799999999999999999999999984 445 99999999999999997666 5
Q ss_pred hcCCCCcEEEEEeCC-Cccc--hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1414 FGQGLGMRVVELTGE-TAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~-~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
++.. ..+....|| .+.. .......+|+|+||+.+.+-+....... +..+.++||||||+-.. ...|-.++..
T Consensus 129 ~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~k--n~~Y~~Vmr~ 203 (746)
T KOG0354|consen 129 YLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTSK--NHPYNNIMRE 203 (746)
T ss_pred ccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEcccccccc--cccHHHHHHH
Confidence 5432 455555555 3333 3456677999999999977666533222 78899999999998753 3456666654
Q ss_pred HHHHHhhcCCCCeEEEEcccCCC
Q 000324 1491 MRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+..... ...|++|||||+.+
T Consensus 204 ~l~~k~---~~~qILgLTASpG~ 223 (746)
T KOG0354|consen 204 YLDLKN---QGNQILGLTASPGS 223 (746)
T ss_pred HHHhhh---ccccEEEEecCCCc
Confidence 444322 23499999999986
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=210.48 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=167.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC-
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG- 1417 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~- 1417 (1665)
...|+|+|+.+-... .++..+++.||||+|||.++++++.+.... .... +++|..||+++++|+++++.+.+...
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 458999999885443 346679999999999999998877765544 2233 89999999999999999987433222
Q ss_pred CCcEEEEEeCCCccch-----------------------hccC-------CCcEEEEChhhHHHHHHhhhccccCCC---
Q 000324 1418 LGMRVVELTGETAMDL-----------------------KLLE-------KGQIIISTPEKWDALSRRWKQRKYVQQ--- 1464 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~~-----------------------~~l~-------~~~IIV~TPe~l~~l~r~~~~~~~l~~--- 1464 (1665)
....+..++|....+. ..+. .++|+|||+.++..-.-..+ ...++.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k-h~~lR~~~L 438 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK-HRFIRGFGL 438 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc-hHHHHHHhh
Confidence 1346777777653210 1111 26999999999864221111 112222
Q ss_pred -ccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH--HHHHHhcccCC----c---E------
Q 000324 1465 -VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK--DLGEWIGATSH----G---L------ 1528 (1665)
Q Consensus 1465 -v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~--dl~~wl~~~~~----~---~------ 1528 (1665)
-++|||||+|.+-......++.++.. + . ....++|+||||+|... .+.+-++.... . .
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~---l-~--~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKA---Q-A--QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHH---H-H--hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 35899999999843222233333322 2 2 23567999999998742 34433332100 0 0
Q ss_pred -----EecCC--CCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccC
Q 000324 1529 -----FNFPP--GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (1665)
Q Consensus 1529 -----~~f~~--~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~ 1601 (1665)
+.... ...+.+..+.+........ ......+..+...+..+++++|||||++.|+.++..|.....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-- 585 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-- 585 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC--
Confidence 00000 0001111122111100000 001233445555556778999999999999999988842110
Q ss_pred CCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHH----HHHHHH-hcCC---ceEEEC
Q 000324 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE----VVSALF-EAGK---IKICYR 1665 (1665)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~----~v~~~F-~~G~---i~VLVC 1665 (1665)
-...+..+||+++..+|. .+++.| ++|+ .+||||
T Consensus 586 ------------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 586 ------------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred ------------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 013489999999999994 567778 6776 478886
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=192.86 Aligned_cols=262 Identities=24% Similarity=0.346 Sum_probs=183.4
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1341 HFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.+|.-|.+++..+... .-|-++++--|||||++|.++++..+.. +. ++...+||.-||+|.+..+.+.|.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHHHHHHHHHHHHHhh
Confidence 7999999999998751 2378999999999999999999988876 33 999999999999999999996665
Q ss_pred CCCCcEEEEEeCCCccchh-----ccCC--CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK-----LLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~-----~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
. .|++|..++|......+ .+.. .+|||+|= .+++ ....++++.++|+||-|+.+ +.
T Consensus 337 ~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALiQ---d~V~F~~LgLVIiDEQHRFG---------V~ 399 (677)
T COG1200 337 P-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALIQ---DKVEFHNLGLVIIDEQHRFG---------VH 399 (677)
T ss_pred h-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhhh---cceeecceeEEEEecccccc---------HH
Confidence 4 57999999998776522 2222 49999993 3333 35568899999999999997 55
Q ss_pred HHHHHHHhhcCC-CCeEEEEcccCCChHHHH-HHhcccCCc-EEecCCCCCccceEEEEeecccchhhHHHHhcChhHHH
Q 000324 1489 SRMRYIASQVEN-KIRIVALSTSLANAKDLG-EWIGATSHG-LFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (1665)
Q Consensus 1489 srl~~i~~~~~~-~~riI~lSATl~n~~dl~-~wl~~~~~~-~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~ 1565 (1665)
.|..-.. -.. .+.++.||||+-+ +.+| ..+|..... +-..+|...|+.-. .... . .....+.
T Consensus 400 QR~~L~~--KG~~~Ph~LvMTATPIP-RTLAlt~fgDldvS~IdElP~GRkpI~T~--~i~~--~--------~~~~v~e 464 (677)
T COG1200 400 QRLALRE--KGEQNPHVLVMTATPIP-RTLALTAFGDLDVSIIDELPPGRKPITTV--VIPH--E--------RRPEVYE 464 (677)
T ss_pred HHHHHHH--hCCCCCcEEEEeCCCch-HHHHHHHhccccchhhccCCCCCCceEEE--Eecc--c--------cHHHHHH
Confidence 5544332 234 5788999999644 2222 223333322 23334444443322 2111 1 1223455
Q ss_pred HHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHh-cccEEEEcCCCC
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLN 1644 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gI~~~H~~m~ 1644 (1665)
.+...+..++++.|.||-..+.+.+-..-. ++ .-..|+..+ +..|+.+||.|+
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeESE~l~l~~a------------------~~--------~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAA------------------EE--------LYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred HHHHHHHcCCEEEEEeccccccccchhhhH------------------HH--------HHHHHHHHcccceeEEEecCCC
Confidence 667777889999999997776652220000 00 012333333 456999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..++..|++.|++|+++||||
T Consensus 519 ~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 519 PAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred hHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999997
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-15 Score=201.56 Aligned_cols=203 Identities=17% Similarity=0.227 Sum_probs=120.2
Q ss_pred eeEEEEcccCC---ChHHHHHHHhccccCceEEe-cCCCccccceEEEEeeecC-----chhHHHHHHHHHHHHHHHHHh
Q 000324 661 IRLVGLSATLP---NYEDVALFLRVNLEKGLFYF-DNSYRPVPLSQQYIGIQVK-----KPLQRFQLMNDLCYEKVVAVA 731 (1665)
Q Consensus 661 ~riV~lSATl~---n~~dv~~~l~~~~~~~~~~f-~~~~rpv~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~ 731 (1665)
..+|++||||. +.+-+.+.++... .....+ .+.|....-..-++.-... +.......+...+.+.+ ..
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~-~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~-~~- 672 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTD-VHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEIT-AI- 672 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCc-cccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHH-Hh-
Confidence 36889999997 5666777777642 111122 2222211111112111111 11122223333333322 22
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.++++|||++|.+....++..|...... .++.++..+.. ..|..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~ 716 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAK 716 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHH
Confidence 3578999999999999999888653211 11222233333 57889
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceE--EEEecccccCCCCC----------------CcccC----CHHHHHhhhc
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLG 869 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~--vVI~~t~~yd~~~g----------------~~~~~----s~~~~~Qr~G 869 (1665)
+++.|++|...||+||+.+++|||+|+.. .||--..||.++.. .|.++ ....+.|.+|
T Consensus 717 ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~G 796 (850)
T TIGR01407 717 IKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALG 796 (850)
T ss_pred HHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999854 34444556665431 22333 3467889999
Q ss_pred ccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
|.-|... ..|..+++-..-....|-+.+-+.+|
T Consensus 797 RlIRs~~-D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 797 RLIRREN-DRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cccccCC-ceEEEEEEccccccchHHHHHHHhCC
Confidence 9999764 46876666555444566555555555
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-16 Score=191.54 Aligned_cols=261 Identities=15% Similarity=0.174 Sum_probs=163.0
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~---~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
...++++|.+|+..+.+. ....++++|||+|||+++..++-. +.. +++||||+++|+.|+.+.+.+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~~~-------~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-LKR-------STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-hcC-------CEEEEECcHHHHHHHHHHHHHhcC
Confidence 457999999999999984 556999999999999999776642 222 599999999999999987775544
Q ss_pred CCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~ 1495 (1665)
. +..++.+.|+...- ....|+|+|-..+...- .-........++||+||||++.... +..+...+
T Consensus 106 ~--~~~~g~~~~~~~~~----~~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~---- 170 (442)
T COG1061 106 L--NDEIGIYGGGEKEL----EPAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL---- 170 (442)
T ss_pred C--ccccceecCceecc----CCCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh----
Confidence 2 13456666654322 11579999977765421 0011122369999999999997554 22222211
Q ss_pred hhcCCCCeEEEEcccCCChH-----HHHHHhcccCCcEEecCC-------CCCccceEEEEeecccch------hh----
Q 000324 1496 SQVENKIRIVALSTSLANAK-----DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGVDITN------FE---- 1553 (1665)
Q Consensus 1496 ~~~~~~~riI~lSATl~n~~-----dl~~wl~~~~~~~~~f~~-------~~rpv~l~i~i~~~~~~~------~~---- 1553 (1665)
.....++|||||++..+ ++...+| ..+|.+.. ...|..+........... ..
T Consensus 171 ---~~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 171 ---SAAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred ---hcccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 21222899999987533 3334443 22333321 112211111111011000 00
Q ss_pred ---------------HHHHhcChhHHHHHHHHhc---CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCccc
Q 000324 1554 ---------------ARMQAMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (1665)
Q Consensus 1554 ---------------~~~~~~~k~~~~~i~~~l~---~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (1665)
.............+...+. .+.+++|||.+..++..++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------- 305 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------- 305 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC-------------------
Confidence 1111112222222222222 467899999999999999977721
Q ss_pred chhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1616 VEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1616 l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
..++..+.+..+..+|..+++.|+.|.+++||
T Consensus 306 -----------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv 337 (442)
T COG1061 306 -----------------PGIVEAITGETPKEEREAILERFRTGGIKVLV 337 (442)
T ss_pred -----------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 11267999999999999999999999999987
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=197.70 Aligned_cols=277 Identities=18% Similarity=0.175 Sum_probs=167.1
Q ss_pred EEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh------
Q 000324 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK------ 1434 (1665)
Q Consensus 1361 lv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~------ 1434 (1665)
|+.||||||||.+|+.++...+.. ++ ++||++|+++|+.|+++++++.|+ .++..++|+.+...+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHH
Confidence 478999999999997776655544 33 899999999999999999997774 578889998765422
Q ss_pred cc-CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC--CchhHHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 000324 1435 LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--GGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1435 ~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~--~g~~~e~~~srl~~i~~~~~~~~riI~lSATl 1511 (1665)
.. ..++|||+|+..+. ..+.++++|||||+|...-. .++.|.. ..+..+... ..+.++|++|||+
T Consensus 72 ~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~a--r~~a~~ra~-~~~~~vil~SATP 139 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHA--RDVAVYRAK-KFNCPVVLGSATP 139 (505)
T ss_pred HHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcH--HHHHHHHHH-hcCCCEEEEeCCC
Confidence 11 24689999987652 24678999999999987642 2444321 111112222 3478899999994
Q ss_pred CChHHHHHHhcccCCcEEecC--CCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHH
Q 000324 1512 ANAKDLGEWIGATSHGLFNFP--PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589 (1665)
Q Consensus 1512 ~n~~dl~~wl~~~~~~~~~f~--~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~ 1589 (1665)
..+.+...... ........ +..++.| .+.+....... ....+....+..+.+.+..++++|||+|+|.-+-.
T Consensus 140 -sles~~~~~~g-~~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~ 213 (505)
T TIGR00595 140 -SLESYHNAKQK-AYRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKN 213 (505)
T ss_pred -CHHHHHHHhcC-CeEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCe
Confidence 44443332211 11111111 1112222 22222211111 01234556778888888888999999999875322
Q ss_pred HH-----HH-------------------HHHhcccCCCcccccccCCcccchhh---HhhhhHHHHHHHh-cccEEEEcC
Q 000324 1590 TA-----VD-------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATL-RHGVGYLHE 1641 (1665)
Q Consensus 1590 la-----~~-------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l-~~gI~~~H~ 1641 (1665)
+. .. .+.+|...........+|....+... .+++. +.|+..+ +..|..+|+
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~-e~l~~~fp~~~v~~~d~ 292 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE-EELAKLFPGARIARIDS 292 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHH-HHHHhhCCCCcEEEEec
Confidence 11 00 01112111111111223333333322 23332 3344444 578999999
Q ss_pred CCCHHHH--HHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQ--EVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR--~~v~~~F~~G~i~VLVC 1665 (1665)
+++...+ ..+++.|++|+++|||+
T Consensus 293 d~~~~~~~~~~~l~~f~~g~~~ILVg 318 (505)
T TIGR00595 293 DTTSRKGAHEALLNQFANGKADILIG 318 (505)
T ss_pred ccccCccHHHHHHHHHhcCCCCEEEe
Confidence 9987766 89999999999999985
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=189.91 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
-.|+|+|..+++.++.|+ |+.|.||+|||++|.+|++.+... + +.++|++||++||.|.++.+. .+...+|
T Consensus 102 ~~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~---G--~~v~VvTptreLA~qdae~~~-~l~~~lG 172 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA---G--LPVHVITVNDYLAERDAELMR-PLYEALG 172 (656)
T ss_pred CCCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc---C--CeEEEEcCcHHHHHHHHHHHH-HHHhhcC
Confidence 478899999999999876 999999999999999999977654 2 289999999999999999888 5666789
Q ss_pred cEEEEEeCCCccch-hccCCCcEEEEChhhH-HHHHHhh-h----------------------ccccCCCccEEEeeccc
Q 000324 1420 MRVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRW-K----------------------QRKYVQQVSLFIIDELH 1474 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~-~----------------------~~~~l~~v~llViDEaH 1474 (1665)
++|+.++|+.+... +....+||+++|...+ .+++|.. . .......+.+.||||+|
T Consensus 173 lsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD 252 (656)
T PRK12898 173 LTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD 252 (656)
T ss_pred CEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc
Confidence 99999999976653 3456789999999987 2233321 0 01123457899999999
Q ss_pred ccC
Q 000324 1475 LIG 1477 (1665)
Q Consensus 1475 ~l~ 1477 (1665)
.++
T Consensus 253 SiL 255 (656)
T PRK12898 253 SVL 255 (656)
T ss_pred cee
Confidence 653
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=190.49 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
...++|+|.|++..+..... .++.++||+|||++|.+|++.+... +. .++|++|+++||.|..+.+. .+...+
T Consensus 66 ~lglrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~-~l~~~L 138 (762)
T TIGR03714 66 VLGMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMG-PVYEWL 138 (762)
T ss_pred hcCCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHH-HHHhhc
Confidence 34568888888887765455 7999999999999999998766554 22 69999999999999998777 666678
Q ss_pred CcEEEEEeCCC-----ccc-hhccCCCcEEEEChhhH-HHHHHhh----hccccCCCccEEEeecccccC
Q 000324 1419 GMRVVELTGET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1419 ~i~v~~l~G~~-----~~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llViDEaH~l~ 1477 (1665)
|++|+...++. ... .+....++|+++||+++ .++++.. .....+..+.++|+||||.++
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 99998877752 111 23446789999999999 3444321 122346789999999999874
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=192.98 Aligned_cols=128 Identities=22% Similarity=0.183 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|..+...+..|+ ++.|.||+|||++|.+|++..... +. .+.+++||++||.|.+..+. .+...+|+
T Consensus 78 ~p~~vQl~~~~~l~~G~---Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~-~l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN---IAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMG-QVYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCCc---eeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHH-HHHhhcCC
Confidence 78889988888776543 999999999999999999865554 22 79999999999999999888 66667899
Q ss_pred EEEEEeCCCc-cc-hhccCCCcEEEEChhhH-HHHHHh-h---hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETA-MD-LKLLEKGQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~-~~-~~~l~~~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+++.+.|+.+ .. .+....++|+++||+++ .++++. . .....+..+.++|+||||.++
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999987 43 44556789999999998 333332 1 122356789999999999764
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=184.69 Aligned_cols=169 Identities=23% Similarity=0.407 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|..+|.+.+..+=. ++.++|+|||.+|||.+-..+|-.+++.. ..+ -+||++|+++|++|+......+|....-.
T Consensus 511 ~Pd~WQ~elLDsvDr-~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDR-NESAVIVAPTSAGKTFISFYAIEKVLRES-DSD--VVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhc-ccceEEEeeccCCceeccHHHHHHHHhhc-CCC--EEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 477899999888744 55699999999999999889998888883 444 79999999999999999999898544334
Q ss_pred EEEEEeCCCccchhc-cCCCcEEEEChhhHHHHHHh-hhccccCCCccEEEeecccccCCCC-chhHHHHHHHHHHHHhh
Q 000324 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l~~l~r~-~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~~i~~~ 1497 (1665)
+...+.|..+.+.++ .-+|+|+|+-|+.+..++-. .....+..+++++|+||+|.++... |..+|.++.-
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------- 659 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------- 659 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-------
Confidence 555666766665442 23789999999999887654 2234578899999999999999844 5555554421
Q ss_pred cCCCCeEEEEcccCCChHHHHHHhc
Q 000324 1498 VENKIRIVALSTSLANAKDLGEWIG 1522 (1665)
Q Consensus 1498 ~~~~~riI~lSATl~n~~dl~~wl~ 1522 (1665)
.+++++++|||+.|+..+-.|+.
T Consensus 660 --i~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred --cCCCeeEEecccCCHHHHHHHHH
Confidence 36789999999999999999997
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=194.03 Aligned_cols=251 Identities=17% Similarity=0.216 Sum_probs=151.9
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEccc----HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL----EALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Pt----reLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~ 1430 (1665)
.+++.++|+|+||||||. .+|.+..-......+ ++++.-|. ++||.++...+...++...|.+| .
T Consensus 87 ~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v-------r 155 (1294)
T PRK11131 87 RDHQVVIVAGETGSGKTT--QLPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGYKV-------R 155 (1294)
T ss_pred HhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee-------c
Confidence 346668899999999999 578443222111222 45556675 56666666666544444333222 1
Q ss_pred cchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc-ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1431 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH-~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
.+.+.-..++|+|+||+++...+.. ...+.++++||||||| +..+.. - ++..++.+... .++.|+|++||
T Consensus 156 f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~D-f----LLg~Lk~lL~~-rpdlKvILmSA 226 (1294)
T PRK11131 156 FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNID-F----ILGYLKELLPR-RPDLKVIITSA 226 (1294)
T ss_pred CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccc-h----HHHHHHHhhhc-CCCceEEEeeC
Confidence 1222235679999999999887764 3468999999999999 454432 1 22334444332 24689999999
Q ss_pred cCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHH-hcCCCCEEEEeCchHHHH
Q 000324 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRKYVR 1588 (1665)
Q Consensus 1510 Tl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~-l~~~~~~IVFv~sr~~a~ 1588 (1665)
|++ ...++++++..+ ++.... +..|++++............ ..........+... ....+.+||||+++..++
T Consensus 227 Tid-~e~fs~~F~~ap--vI~V~G--r~~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe 300 (1294)
T PRK11131 227 TID-PERFSRHFNNAP--IIEVSG--RTYPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSGEREIR 300 (1294)
T ss_pred CCC-HHHHHHHcCCCC--EEEEcC--ccccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Confidence 994 567888876432 344443 33344444432211110000 00001111112111 134567999999999999
Q ss_pred HHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1589 ~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.++..|.... .-...|..+||+|++.+|..+++. .|..+||||
T Consensus 301 ~lae~L~~~~--------------------------------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVA 343 (1294)
T PRK11131 301 DTADALNKLN--------------------------------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLA 343 (1294)
T ss_pred HHHHHHHhcC--------------------------------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEe
Confidence 9998884210 001237789999999999999886 588999987
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-16 Score=176.24 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=144.5
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCC---CCcEEEEEeCCCccc---hhccCCCcEEEEChhhHHHHHHhhhccccCCC
Q 000324 1391 MRAVYIAPLEALAKERYRDWEIKFGQG---LGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (1665)
Q Consensus 1391 ~r~l~I~PtreLa~Q~~~~~~~~~~~~---~~i~v~~l~G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (1665)
|.+||+-|++||++|+++.+. .|... ..++...+.|+.... .++..+.||+|+||+|++.++.. ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 689999999999999999777 55543 234444555654333 23445669999999999998876 5667889
Q ss_pred ccEEEeecccccCCCCchhHHHHHHHH----HHHHhhcCCCCeEEEEcccCCCh--HHHH-------HHhcccCCcE---
Q 000324 1465 VSLFIIDELHLIGGQGGPVLEVIVSRM----RYIASQVENKIRIVALSTSLANA--KDLG-------EWIGATSHGL--- 1528 (1665)
Q Consensus 1465 v~llViDEaH~l~~~~g~~~e~~~srl----~~i~~~~~~~~riI~lSATl~n~--~dl~-------~wl~~~~~~~--- 1528 (1665)
++++|+||++.+++.+ |...+.|+ ..+.+. ....|.+..|||+.-. .-++ .|........
T Consensus 364 crFlvlDead~lL~qg---y~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQG---YDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eEEEEecchhhhhhcc---cHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 9999999999988654 23334333 333221 2578999999998652 2333 2332221111
Q ss_pred --Eec----CCCCCc----c--ceE---EEEe-----ecccchhhHHHHhcCh--hHHHHHHHHhcCCCCEEEEeCchHH
Q 000324 1529 --FNF----PPGVRP----V--PLE---IHIQ-----GVDITNFEARMQAMTK--PTFTAIVQHAKNEKPALVFVPSRKY 1586 (1665)
Q Consensus 1529 --~~f----~~~~rp----v--~l~---i~i~-----~~~~~~~~~~~~~~~k--~~~~~i~~~l~~~~~~IVFv~sr~~ 1586 (1665)
..+ .|+... . +++ +|-. +...+...+....+.+ ....++.++ ...++||||.|+..
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQD 517 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEecccc
Confidence 111 010000 0 000 0000 0000000111111111 222233333 45679999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1587 a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|..+-+.+..... -.+.+..+||+..+.+|+..++.|+.+.++.|||
T Consensus 518 cDnLer~~~qkgg--------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflic 564 (725)
T KOG0349|consen 518 CDNLERMMNQKGG--------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLIC 564 (725)
T ss_pred chHHHHHHHHcCC--------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEE
Confidence 9998877743211 2456899999999999999999999999999999
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=187.86 Aligned_cols=343 Identities=16% Similarity=0.148 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+++.|..++..++.. .++.+++.|||||||+++...+...+... ...++|+|+|+++|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 567888888776432 35799999999999998876665544221 246899999999999999
Q ss_pred HHHHHHhhccCCcEEEEEECCC-cccHhh-hccccEEEeChhhHHHHHhhcCCCcccc-ceeEEEEecccccccCCchHH
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQ-TLTRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQ-LVKLLIIDEIHLLHDNRGPVL 643 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~-~~~~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~-~v~liIiDEaH~l~d~rg~~l 643 (1665)
.+.|....... + ...+.. .+.... .....|+|+|..++.............. .--+||+||||+... | .+
T Consensus 310 ~~~f~~~~~~~---~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~ 382 (667)
T TIGR00348 310 MKEFQSLQKDC---A-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-EL 382 (667)
T ss_pred HHHHHhhCCCC---C-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HH
Confidence 99998864210 1 001110 010111 1246899999998753222211101111 112899999997642 1 12
Q ss_pred HHHHHHHHHHHhhccCCeeEEEEcccCCChHHH--HHHHhccccCceEEecC-----CCccccceEEEEeeec-----Cc
Q 000324 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDV--ALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGIQV-----KK 711 (1665)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv--~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~~~~-----~~ 711 (1665)
...+. ..-++..++|||||.-...+- ...++......++.+.- ..-.+|+ .|.+... ..
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i--~Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKI--DYEDRLPEDHLDRK 453 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeE--EEEecchhhccChH
Confidence 22221 123467899999996422111 11111100011111100 0011111 1111100 00
Q ss_pred hhH------------------------HHHH---------HHHHHHHHHHHHh----C--CCeEEEEecChhHHHHHHHH
Q 000324 712 PLQ------------------------RFQL---------MNDLCYEKVVAVA----G--KHQVLIFVHSRKETAKTARA 752 (1665)
Q Consensus 712 ~~~------------------------~~~~---------~~~~~~~~i~~~~----~--~~~vLVFv~sr~~~~~~a~~ 752 (1665)
... .... ....+...+.++. . +++++|||.+|..|..++..
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 000 0000 0011111222221 1 47999999999999999998
Q ss_pred HHHHhhhcc-ccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCC-CHHHHHHHHHHHhC-CCCCeEEeccc
Q 000324 753 IRDTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTAT 829 (1665)
Q Consensus 753 L~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm-~~~dR~~v~~~F~~-g~i~VLVaT~t 829 (1665)
|.+...... .....+.............. ..+... +..- .......+.+.|++ +.++|||+++.
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdm 600 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRDYN---------KHIRTK----FDKSDGFEIYYKDLERFKKEENPKLLIVVDM 600 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHHHH---------HHhccc----cccchhhhHHHHHHHHhcCCCCceEEEEEcc
Confidence 877643220 00000000000000011100 001000 0000 01133567888976 68999999999
Q ss_pred cccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeC
Q 000324 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1665)
Q Consensus 830 la~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (1665)
+-.|+|.|.+.+++. |-+- .-..++|++||+.|+-...+-.++|+.-
T Consensus 601 llTGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy 647 (667)
T TIGR00348 601 LLTGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDY 647 (667)
T ss_pred cccccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEEC
Confidence 999999999988875 3221 2235899999999952222223455543
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=183.89 Aligned_cols=129 Identities=17% Similarity=0.056 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
-.|+++|..+...+..| .++.++||+|||++|.+|++-.... +. .+.+++||++||.|.++.+. .+...+|
T Consensus 55 ~~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~-~l~~~LG 125 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMG-QVYRFLG 125 (745)
T ss_pred CCccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHH-HHhccCC
Confidence 36777777777766543 4999999999999999999644333 22 69999999999999999877 6667789
Q ss_pred cEEEEEeCCCccchh-ccCCCcEEEEChhhH-HHHHHhhh----ccccCCCccEEEeecccccC
Q 000324 1420 MRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~llViDEaH~l~ 1477 (1665)
++++.++|+.+...+ ....++|+++||+++ .++++... ....++.+.++||||+|.++
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 999999998776533 334579999999999 66666421 12356789999999999775
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-14 Score=158.60 Aligned_cols=258 Identities=19% Similarity=0.239 Sum_probs=179.2
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
.+++|.|..+-..+. +.....+|.|-||+|||.+..-.|-..+.+ ++ ++.+..|....|.+.+.+++..|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc-
Confidence 489999998877765 345569999999999999987777766665 44 999999999999999999998887
Q ss_pred CCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHh
Q 000324 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~ 1496 (1665)
+..+..++|+.... -.+++||+|..++..+- +.++++||||+|...-...+.+...+..-+
T Consensus 170 --~~~I~~Lyg~S~~~----fr~plvVaTtHQLlrFk---------~aFD~liIDEVDAFP~~~d~~L~~Av~~ar---- 230 (441)
T COG4098 170 --NCDIDLLYGDSDSY----FRAPLVVATTHQLLRFK---------QAFDLLIIDEVDAFPFSDDQSLQYAVKKAR---- 230 (441)
T ss_pred --cCCeeeEecCCchh----ccccEEEEehHHHHHHH---------hhccEEEEeccccccccCCHHHHHHHHHhh----
Confidence 46899999987655 23899999998877443 468999999999886555556665554433
Q ss_pred hcCCCCeEEEEcccCCChHHHHHHhcccCCcEEe----cCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhc
Q 000324 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFN----FPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAK 1572 (1665)
Q Consensus 1497 ~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~----f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~ 1572 (1665)
....-+|.||||.++.-+ .-+....-...+ |+...-|+|--+.+..+ .....+ ..+....+..+..+..
T Consensus 231 --k~~g~~IylTATp~k~l~--r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~--~k~l~r-~kl~~kl~~~lekq~~ 303 (441)
T COG4098 231 --KKEGATIYLTATPTKKLE--RKILKGNLRILKLPARFHGKPLPVPKFVWIGNW--NKKLQR-NKLPLKLKRWLEKQRK 303 (441)
T ss_pred --cccCceEEEecCChHHHH--HHhhhCCeeEeecchhhcCCCCCCCceEEeccH--HHHhhh-ccCCHHHHHHHHHHHh
Confidence 345568999999876421 111111111111 22222333333333222 111111 1122234555666656
Q ss_pred CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHH
Q 000324 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (1665)
Q Consensus 1573 ~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~ 1652 (1665)
.+.|++||+|+....+.+|..|.... -...+++.|+. ..+|....
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~---------------------------------~~~~i~~Vhs~--d~~R~EkV 348 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKL---------------------------------PKETIASVHSE--DQHRKEKV 348 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhC---------------------------------Cccceeeeecc--CccHHHHH
Confidence 78999999999999999997773211 12347889986 67899999
Q ss_pred HHHhcCCceEEE
Q 000324 1653 ALFEAGKIKICY 1664 (1665)
Q Consensus 1653 ~~F~~G~i~VLV 1664 (1665)
+.|++|++.+||
T Consensus 349 ~~fR~G~~~lLi 360 (441)
T COG4098 349 EAFRDGKITLLI 360 (441)
T ss_pred HHHHcCceEEEE
Confidence 999999999998
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=175.10 Aligned_cols=291 Identities=22% Similarity=0.296 Sum_probs=192.3
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
.-++-+|||.||||--| |+.+... .+.+|--|.|-||.|+++++.+. |+.|..+||.....
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~a-----------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSA-----------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRF 252 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhh-----------ccceecchHHHHHHHHHHHhhhc----CCCccccccceeee
Confidence 33777899999999755 4455442 24799999999999999998774 89999999976543
Q ss_pred Hhh-hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
... -..++.+-||-|+.. .-..+.+.||||+++|.| .||..+...+--+ ....+.+.|=-|-
T Consensus 253 ~~~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsv 316 (700)
T KOG0953|consen 253 VLDNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSV 316 (700)
T ss_pred cCCCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchH
Confidence 321 235778889988522 234478999999999999 6998776544333 2234444444344
Q ss_pred CCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHH
Q 000324 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKT 749 (1665)
Q Consensus 670 l~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~ 749 (1665)
++=.+++..-.+.. +....-.|-.|+... +.....+ .....+.++| |-||++...+
T Consensus 317 ldlV~~i~k~TGd~-----vev~~YeRl~pL~v~-----------------~~~~~sl-~nlk~GDCvV-~FSkk~I~~~ 372 (700)
T KOG0953|consen 317 LDLVRKILKMTGDD-----VEVREYERLSPLVVE-----------------ETALGSL-SNLKPGDCVV-AFSKKDIFTV 372 (700)
T ss_pred HHHHHHHHhhcCCe-----eEEEeecccCcceeh-----------------hhhhhhh-ccCCCCCeEE-EeehhhHHHH
Confidence 43222332222221 111111222232210 0111111 1223455544 5578888888
Q ss_pred HHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhC--CCCCeEEec
Q 000324 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVST 827 (1665)
Q Consensus 750 a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~--g~i~VLVaT 827 (1665)
...+...+. ..+++.+|+|+++.|...-.+|.+ +..+|||||
T Consensus 373 k~kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs 416 (700)
T KOG0953|consen 373 KKKIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS 416 (700)
T ss_pred HHHHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEee
Confidence 777766542 236888999999999999999987 899999999
Q ss_pred cccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEe-CCCcHHHHHHhhcC
Q 000324 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLSLMNQ 900 (1665)
Q Consensus 828 ~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~-~~~~~~~y~~ll~~ 900 (1665)
++.++|+|+.-.++|+..-..|+... ..+++..+..|.+|||||-|- +...+++-+ ..+++..+.+.+..
T Consensus 417 DAIGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s-~~~~G~vTtl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 417 DAIGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGS-KYPQGEVTTLHSEDLKLLKRILKR 487 (700)
T ss_pred cccccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhccccccc-CCcCceEEEeeHhhHHHHHHHHhC
Confidence 99999999988888887777787543 688999999999999999763 222333333 23555666555543
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-14 Score=184.73 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=185.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+|.++|.+.+..++ ..+.+.|++-..|.|||+.++.. +..+...... ...+|||+|. ++..++.+.|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~-------~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGI-------TGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCC-------CCCEEEEeCh-HHHHHHHHHHH
Confidence 78999999998765 34567899999999999987443 3334332111 2368999995 67788999998
Q ss_pred HhhccCCcEEEEEECCCcccHhh------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
+++. .+++..++|+....... ....+|+|+|++.+. +.... ..--..++|||||+|.+-....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~---~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAI---KEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHH---HHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46788888865432211 235789999999642 21110 0112368999999999865321
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCC--ChHHHHHHHhccccCceEE----e------cC-------------CCcc---
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~--n~~dv~~~l~~~~~~~~~~----f------~~-------------~~rp--- 697 (1665)
.+++.++.+ ... ..++||+|.- |..++...+..-. .++|. | .. -.+|
T Consensus 309 klskalr~L---~a~-~RLLLTGTPlqNnl~ELwsLL~FL~-P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---STN-YRLLITGTPLQNNLHELWALLNFLL-PEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---hcC-cEEEEecCCCCCCHHHHHHHHhcCC-CCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122332222 223 3478999943 2444433332110 00000 0 00 0000
Q ss_pred ----------c-cceEEEEeeecCchhHH-HHHHH-----------------HHHH------------------------
Q 000324 698 ----------V-PLSQQYIGIQVKKPLQR-FQLMN-----------------DLCY------------------------ 724 (1665)
Q Consensus 698 ----------v-~l~~~~~~~~~~~~~~~-~~~~~-----------------~~~~------------------------ 724 (1665)
. |.....+.+........ +..+. ..+.
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 0 11112222221110000 00000 0000
Q ss_pred -------------HHHHHH--hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 725 -------------EKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 725 -------------~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
..++.. ..+.++|||+........+...|.
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~----------------------------------- 508 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM----------------------------------- 508 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH-----------------------------------
Confidence 000000 012344444433322222222221
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCC---CCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHh
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
...+++..+||+++..+|..+.+.|... ..-+|+||.+.+.||||...++||. ||+.- ++....|
T Consensus 509 --~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD~dW------NP~~d~Q 576 (1033)
T PLN03142 509 --YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YDSDW------NPQVDLQ 576 (1033)
T ss_pred --HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eCCCC------ChHHHHH
Confidence 1235567789999999999999999753 3457899999999999999999999 55442 5667999
Q ss_pred hhcccCCCCCCCceEEEEEeCCCcH
Q 000324 867 MLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
++|||-|.|..+.-.+|.+++....
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9999999997666566666666543
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-14 Score=181.86 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=195.2
Q ss_pred CCC-CCCHHHHHHHHHHHc-----CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1338 GFK-HFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1338 ~f~-~~~~iQ~qa~~~ll~-----~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
+|. .-||=|..|+..+.. ..-+-+||+--|.|||.+|+=|++..... ++ ++.++|||--||.|.++.|+
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTlLA~QHy~tFk 664 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTLLAQQHYETFK 664 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHHhHHHHHHHHH
Confidence 454 579999999999874 22357999999999999999999887776 33 99999999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCccc-----hhccCCC--cEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhH
Q 000324 1412 IKFGQGLGMRVVELTGETAMD-----LKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~-----~~~l~~~--~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~ 1484 (1665)
++|.. .+++|..+.-=.+.. .+.++.+ ||||+|= .++ .....+.+++|+||||-|+.+=..
T Consensus 665 eRF~~-fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL---~kdv~FkdLGLlIIDEEqRFGVk~---- 732 (1139)
T COG1197 665 ERFAG-FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLL---SKDVKFKDLGLLIIDEEQRFGVKH---- 732 (1139)
T ss_pred HHhcC-CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----Hhh---CCCcEEecCCeEEEechhhcCccH----
Confidence 99986 478888887655544 2233444 9999992 222 245568899999999999997322
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHH
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (1665)
Q Consensus 1485 e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~ 1564 (1665)
-.+++.+ ..++-++-||||+-+-.--..-.|...-.+..-+|. +..|+..++..++. ....
T Consensus 733 ---KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~-~R~pV~T~V~~~d~-----------~~ir 793 (1139)
T COG1197 733 ---KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE-DRLPVKTFVSEYDD-----------LLIR 793 (1139)
T ss_pred ---HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC-CCcceEEEEecCCh-----------HHHH
Confidence 2344433 568889999999755332233345544444444444 44477777766542 2344
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
.+|+..+..++++-..+|..+....++..|....+ ...|++-||.|+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP---------------------------------EarI~vaHGQM~ 840 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVP---------------------------------EARIAVAHGQMR 840 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC---------------------------------ceEEEEeecCCC
Confidence 56777778999999999999999999988853322 235999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
..+-..|+..|.+|+.+||||
T Consensus 841 e~eLE~vM~~F~~g~~dVLv~ 861 (1139)
T COG1197 841 ERELEEVMLDFYNGEYDVLVC 861 (1139)
T ss_pred HHHHHHHHHHHHcCCCCEEEE
Confidence 999999999999999999999
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-13 Score=177.39 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=64.7
Q ss_pred cCCCCCCCHHHHH---HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 490 FKGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 490 f~g~~~l~~iQ~~---~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+.|| +.++-|.+ ++..++.++..+++.|+||+|||++|++|++... .+.++|+++||++|++|+
T Consensus 241 ~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 241 LLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred cCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHH
Confidence 3566 68999999 5555677788899999999999999999988643 134799999999999999
Q ss_pred H-HHHHHhhccCCcEEEEEEC
Q 000324 567 V-GNLSNRLQMYDVKVRELSG 586 (1665)
Q Consensus 567 ~-~~~~~~~~~~gi~V~~ltG 586 (1665)
. +.+..+.+.+++++..+.|
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEEC
Confidence 5 5555544445666665554
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-13 Score=173.37 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=96.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.+.++||||+|++.++.++..|.+.+. .+.++||+++..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGI-------------------------------------KVRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhcc-------------------------------------ceeeeeCCCCHHHHHH
Confidence 367999999999999999999987642 2566799999999999
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceEEEEec-ccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCc
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKG-TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~-t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
+++.|+.|.+.|||||+.+++|+|+|++.+||.. ...+..+. +..+|+||+|||||. ..|.++++++..+
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~------~~~~~iqriGRagR~---~~G~vi~~~~~~~ 554 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLR------SERSLIQTIGRAARN---VNGKVIMYADKIT 554 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCC------CHHHHHHHhcCCCCC---CCCEEEEEEcCCC
Confidence 9999999999999999999999999999988872 12222333 788999999999996 4799999988655
Q ss_pred H
Q 000324 891 L 891 (1665)
Q Consensus 891 ~ 891 (1665)
.
T Consensus 555 ~ 555 (655)
T TIGR00631 555 D 555 (655)
T ss_pred H
Confidence 3
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=171.35 Aligned_cols=312 Identities=18% Similarity=0.235 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
-..++.+|..|+..+. .++..+|+++.||+|||..|+..| ..|.+... -.+||+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~~--------~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSGW--------VKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcch--------hheeeEEechHHHHHHHHH
Confidence 3578999999997654 345569999999999999986544 44444322 3489999999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhc---CCCccccceeEEEEecccccccCCchHHHH
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS---GDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~---~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
.|...+ +.+-.+..+.+-.... .++|.|+|...+....... ........++||||||||+=.- ..+..
T Consensus 234 af~~~~-P~~~~~n~i~~~~~~~-----s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFL-PFGTKMNKIEDKKGDT-----SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhC-CCccceeeeecccCCc-----ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 988755 4454454444432221 5789999999863333222 1223445689999999996321 11223
Q ss_pred HHHHHHHHHhhccCCeeEEEEcccCCChHHHH--HHHhccccCceEE--------ecCCCccccceEE--EEeeecCch-
Q 000324 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFY--------FDNSYRPVPLSQQ--YIGIQVKKP- 712 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~--~~l~~~~~~~~~~--------f~~~~rpv~l~~~--~~~~~~~~~- 712 (1665)
|+..+ ...++|++||+.+-.+.. .|+...|. ..+. |-..++++.+... .-|+.....
T Consensus 305 I~dYF---------dA~~~gLTATP~~~~d~~T~~~F~g~Pt-~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 305 ILDYF---------DAATQGLTATPKETIDRSTYGFFNGEPT-YAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred HHHHH---------HHHHHhhccCcccccccccccccCCCcc-eeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 44332 122367799976533332 23311110 0000 0011222221111 111111100
Q ss_pred ---------------------hH-------HHHHHHHHHHHHHHHH-hC--CCeEEEEecChhHHHHHHHHHHHHhhhcc
Q 000324 713 ---------------------LQ-------RFQLMNDLCYEKVVAV-AG--KHQVLIFVHSRKETAKTARAIRDTALEND 761 (1665)
Q Consensus 713 ---------------------~~-------~~~~~~~~~~~~i~~~-~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (1665)
.. +...+...+-+.+... .+ -+++||||.+..+|+.+...|.......+
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 00 0111111122222221 11 36899999999999999999987654321
Q ss_pred ccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHh-CCCCCeEEeccccccccCCCceE
Q 000324 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPAHT 840 (1665)
Q Consensus 762 ~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~-~g~i~VLVaT~tla~GVdlP~v~ 840 (1665)
+.+ +-...+. ...++..+-+.+. +.--+|.|+.+.+..|||+|.+.
T Consensus 455 --~~~------------------------------a~~IT~d-~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 455 --GRY------------------------------AMKITGD-AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred --Cce------------------------------EEEEecc-chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 000 1111222 2344455544444 44567899999999999999999
Q ss_pred EEEecccccCCCCCCcccCCHHHHHhhhcccCCCC
Q 000324 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 841 vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (1665)
.++- +-.- .|..-|.||+||+-|.-
T Consensus 502 nlVF-----~r~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 502 NLVF-----DRKV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eeee-----hhhh-----hhHHHHHHHhcCccccC
Confidence 8884 3222 28889999999999953
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=164.98 Aligned_cols=355 Identities=13% Similarity=0.048 Sum_probs=230.5
Q ss_pred hhhHhhcCCC--CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH
Q 000324 484 EWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 484 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (1665)
+.++..+.|. +.+..+|.+++..+-+ ++|+++.-.|.+||.+++.++....+.... ....+|+.||++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------~s~~~~~~~~~~ 342 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTLCH---------ATNSLLPSEMVE 342 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhcCc---------ccceecchhHHH
Confidence 3444555444 4678899999997654 577999999999999999998887765532 235789999999
Q ss_pred HHHHHHHHHHHhhccC----CcEEEEEECCCcccHhh--hccccEEEeChhhH-HHHHhhc-CCCccccceeEEEEeccc
Q 000324 562 LVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 562 La~q~~~~~~~~~~~~----gi~V~~ltGd~~~~~~~--~~~~~IiV~TPekl-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (1665)
+++...+-+.-.+... +--|....|++..++.. ..+.+++++.|... ..++-+. --..++-...++++||+|
T Consensus 343 ~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 343 HLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred HhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 9987654443222111 22244445555544443 35789999999874 3333332 223344556889999999
Q ss_pred ccccCCchHHHHHHHHHHHHHhh--ccCCeeEEEEcccCCChHHH-HHHHhccccCceEEecCCCccccceEEEEeee--
Q 000324 634 LLHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDV-ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ-- 708 (1665)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~--~~~~~riV~lSATl~n~~dv-~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~-- 708 (1665)
.....+|......+.++.+.+.. ...+.+++-.|||+.+.... .+..+.+ ...++..+++ |..-...++.-+
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K~~V~WNP~~ 499 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEKLFVLWNPSA 499 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccceEEEeCCCC
Confidence 98877887777777777665543 24678999999999875443 3344433 2234444433 222221111111
Q ss_pred -c---CchhHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhcc
Q 000324 709 -V---KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (1665)
Q Consensus 709 -~---~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 784 (1665)
. .+..........++.+.+. .+-++|-||++|+-|+-+....++...+... . +..
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~------------~-LV~----- 558 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAP------------H-LVE----- 558 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH------------H-HHH-----
Confidence 1 1111222222333333332 2568999999999998887766665433211 0 000
Q ss_pred ccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHH
Q 000324 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1665)
Q Consensus 785 ~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~ 864 (1665)
.|.-+.||-+.+||+.++...-.|++.-+|||++|+-|||+-..+.|++ ...| +|++.+
T Consensus 559 -----------~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~----~GFP------~S~aNl 617 (1034)
T KOG4150|consen 559 -----------AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLH----LGFP------GSIANL 617 (1034)
T ss_pred -----------HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEE----ccCc------hhHHHH
Confidence 1233489999999999999999999999999999999999999999998 4444 388999
Q ss_pred HhhhcccCCCCCCCceEEEEEeCCC-cHHHHH
Q 000324 865 MQMLGRAGRPQYDSYGEGIIITGHS-ELRYYL 895 (1665)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~ 895 (1665)
.|.+|||||.. +...++.+.... --++|.
T Consensus 618 ~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 618 WQQAGRAGRRN--KPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred HHHhccccccC--CCceEEEEEeccchhhHhh
Confidence 99999999977 445555554432 234554
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=184.47 Aligned_cols=257 Identities=15% Similarity=0.190 Sum_probs=161.9
Q ss_pred HHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000324 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (1665)
Q Consensus 1350 ~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~ 1429 (1665)
|...+.+++.++|+|+||||||. .+|.+-.-......+ ++++.-|.|--|..++.++.+.++...|..|+.-.
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~--~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~v--- 147 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHG--LIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKV--- 147 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCc--eEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEE---
Confidence 33344456678999999999999 456543222111223 77788999999999998888777655555554322
Q ss_pred ccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc-ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEc
Q 000324 1430 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (1665)
Q Consensus 1430 ~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH-~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lS 1508 (1665)
..+.+.-...+|+++|||.+...+.. ...+.++++|||||+| +..+.. .++..++.+... .++.|+|+||
T Consensus 148 R~~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~~D-----~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 148 RFHDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLNID-----FLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred cCCcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhccch-----hHHHHHHHHHhh-CCCCeEEEEe
Confidence 12222234678999999999876653 3568999999999999 454422 133334444433 3578999999
Q ss_pred ccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchh---hHHHHhcChhHHHHHHHHh-cCCCCEEEEeCch
Q 000324 1509 TSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF---EARMQAMTKPTFTAIVQHA-KNEKPALVFVPSR 1584 (1665)
Q Consensus 1509 ATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~---~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr 1584 (1665)
||+. ...++++++..+ ++.... +..|++++......... ..... .....+.... ...+.+|||+|++
T Consensus 219 ATld-~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 219 ATID-PERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred CCcC-HHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHhhCCCCEEEeCCCH
Confidence 9994 678888886432 344333 33445544432211110 00111 1111222211 2346799999999
Q ss_pred HHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1585 KYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1585 ~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
++++.++..|..... -...|..+||+|++.+|..+++.+ +..+|||
T Consensus 290 ~EI~~l~~~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVL 335 (1283)
T TIGR01967 290 REIRDAAEILRKRNL--------------------------------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVL 335 (1283)
T ss_pred HHHHHHHHHHHhcCC--------------------------------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEE
Confidence 999999988742110 012378899999999999986554 3468888
Q ss_pred C
Q 000324 1665 R 1665 (1665)
Q Consensus 1665 C 1665 (1665)
|
T Consensus 336 A 336 (1283)
T TIGR01967 336 A 336 (1283)
T ss_pred e
Confidence 6
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=186.70 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=108.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll----~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++++|.+|+..+. ++..++++++|||||||.++...+.+.+.. .... ++|||+|+++|+.|..+.|. .++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~-~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFK-DTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHH-hcc
Confidence 358999999998876 356679999999999999976555444443 2333 99999999999999999988 443
Q ss_pred CCCCcEEEEEeCCCcc-chhccCCCcEEEEChhhHHHHHHhhh---ccccCCCccEEEeecccccCC------CC---ch
Q 000324 1416 QGLGMRVVELTGETAM-DLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG------QG---GP 1482 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~-~~~~l~~~~IIV~TPe~l~~l~r~~~---~~~~l~~v~llViDEaH~l~~------~~---g~ 1482 (1665)
...+..+..+.+.... +...-..++|+|||...+........ ....+..+++||+||||+... .+ ..
T Consensus 488 ~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 2112122111111110 11112356999999998765432111 113467899999999998531 11 01
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhc
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~ 1522 (1665)
......+..+.+...+ +...||||||+.. .-...+|
T Consensus 568 ~~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG 603 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFG 603 (1123)
T ss_pred hhhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhC
Confidence 1111234455555443 3567999999863 3344455
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-12 Score=174.98 Aligned_cols=204 Identities=16% Similarity=0.204 Sum_probs=120.8
Q ss_pred eEEEEcccCCC---hHHHHHHHhccccC-ceEEecCCCccccceEEEEe--eecC---chhHHHHHHHHHHHHHHHHHhC
Q 000324 662 RLVGLSATLPN---YEDVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIG--IQVK---KPLQRFQLMNDLCYEKVVAVAG 732 (1665)
Q Consensus 662 riV~lSATl~n---~~dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~ 732 (1665)
.+|++||||.. ..-+...++..... ....+.+.|....-..-++. ++.. ........+.+.+.+. .. ..
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l-~~-~~ 751 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKI-AK-AT 751 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHH-HH-hC
Confidence 57888999873 44455667654211 23344444322111111221 1111 1112223333333332 22 23
Q ss_pred CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHH
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1665)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v 812 (1665)
++++|||++|.+....++..|...... .++.+.--|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~-----------------------------------~~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEEL-----------------------------------EGYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhcccc-----------------------------------cCceEEecCCCCCCHHHH
Confidence 679999999999999999888753211 011112224555668889
Q ss_pred HHHHhCCCCCeEEeccccccccCCCce--EEEEecccccCCCCC----------------CcccC----CHHHHHhhhcc
Q 000324 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (1665)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v--~vVI~~t~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (1665)
.+.|+.+.-.||++|..+..|||+|+- ..||--..||.+|.. .|.++ .+..+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999888999999999999999984 555555567765542 13333 25677899999
Q ss_pred cCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
.-|... ..|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~~-D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTET-DRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccCC-ceEEEEEecCccccchHHHHHHHhCC
Confidence 999764 46876666665445556555455555
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-14 Score=154.36 Aligned_cols=174 Identities=21% Similarity=0.244 Sum_probs=127.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
++..++++|.++++.++++..++++++|||+|||.++..+++..+.... .. +++|++|+++++.|+...+.+.+...
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~--~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GK--RVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CC--cEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4788999999999999986356999999999999999999998887732 23 89999999999999999998555432
Q ss_pred CCcEEEEEeCCCccc--hhccCCC-cEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHH
Q 000324 1418 LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~ 1493 (1665)
.......+.+..... ....... +++++|++.+........ .....++++|+||+|.+.. .... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~-------~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGD-------QLEK 152 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHH-------HHHH
Confidence 224455555543221 1233344 999999999988777632 4567899999999999975 3322 3333
Q ss_pred HHhhcCCCCeEEEEcccCCChHHHHHHhcc
Q 000324 1494 IASQVENKIRIVALSTSLANAKDLGEWIGA 1523 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSATl~n~~dl~~wl~~ 1523 (1665)
+........+++++|||+++..+...|...
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 333346688999999999875544444433
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-14 Score=154.24 Aligned_cols=166 Identities=27% Similarity=0.351 Sum_probs=122.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
++.+++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999998876467999999999999999999988876531 3479999999999999999999
Q ss_pred HhhccCC-cEEEEEECCCcccH--hhhccc-cEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHHHHH
Q 000324 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 572 ~~~~~~g-i~V~~ltGd~~~~~--~~~~~~-~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~le~i 646 (1665)
..+.... ..+..+.|...... ...... +|+++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 44444444432111 112233 999999998755555443 3456789999999999986 555554444
Q ss_pred HHHHHHHHhhccCCeeEEEEcccCCChHH
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPNYED 675 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riV~lSATl~n~~d 675 (1665)
+.. .....+++++|||+++..+
T Consensus 154 ~~~-------~~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 154 LKL-------LPKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HHh-------CCccceEEEEecCCchhHH
Confidence 432 2567899999999875433
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-13 Score=173.29 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
++|+-.|.+-.+.-... -++.|+||+|||++|.+|++..... +. .+++++||++||.|.++.+. .+...+|++
T Consensus 81 ~~~ydvQliGg~~Lh~G-~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~-~l~~~lGLt 153 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEG-NIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMK-PIYEFLGLT 153 (896)
T ss_pred CCcchHHHhhhhhhccC-ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHH-HHhcccCce
Confidence 44444444544322222 5899999999999999999977654 22 68999999999999998777 667778999
Q ss_pred EEEEeCCCccchh-ccCCCcEEEEChhhH-HHHHHhhhcc----ccCCCccEEEeecccccC
Q 000324 1422 VVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1422 v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~llViDEaH~l~ 1477 (1665)
|+.++|+.+...+ ....+||+++||+++ .++++..... .....+.++||||||.++
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999999776533 334689999999998 6666642110 122589999999999764
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-13 Score=171.54 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=95.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.+.++||||+|++.++.++..|.+.+. .+.++||+++..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 367999999999999999999877542 3567799999999999
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCC
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (1665)
+++.|+.|.+.|||||+.+++|+|+|++.+||. +|.+..+ -+-+..+|+||+||+||. ..|.++++++..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999999999999999998887 4432111 012788999999999994 579999999854
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-13 Score=168.87 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=89.4
Q ss_pred hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHH
Q 000324 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (1665)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~ 810 (1665)
..+.|+||||+|+..++.++..|...+... .++|+ .+.+|+
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h-------------------------------------~vLna--kq~~RE 636 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAH-------------------------------------NVLNA--KQHDRE 636 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCc-------------------------------------eeecC--CHHHhH
Confidence 347899999999999999999998876432 34476 578999
Q ss_pred HHHHHHhCCCCCeEEeccccccccCCC---ceE-----EEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 811 LVEDLFGDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
..+..|+.+...|+|||+.++||+|++ .+. +||. +..+. |...|.|+.|||||.| .+|.+
T Consensus 637 a~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----terhe------s~Rid~Ql~GRtGRqG--dpGsS 704 (1025)
T PRK12900 637 AEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SERHE------SRRIDRQLRGRAGRQG--DPGES 704 (1025)
T ss_pred HHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCCCc------hHHHHHHHhhhhhcCC--CCcce
Confidence 999999999999999999999999999 442 3354 33333 6778999999999988 89999
Q ss_pred EEEeCCCc
Q 000324 883 IIITGHSE 890 (1665)
Q Consensus 883 iil~~~~~ 890 (1665)
+.+++.++
T Consensus 705 ~ffvSleD 712 (1025)
T PRK12900 705 VFYVSLED 712 (1025)
T ss_pred EEEechhH
Confidence 99988754
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=164.35 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=174.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
|+ .|...|+-....++.+ ++.-+.||||.|||+-.++..+-...+ +.+++||+||..|+.|.++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg-~SFaiiAPTGvGKTTfg~~~sl~~a~k-----------gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRG-KSFAIIAPTGVGKTTFGLLMSLYLAKK-----------GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcC-CceEEEcCCCCchhHHHHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHHHHH
Confidence 44 8999999999998876 559999999999998665555443322 4589999999999999999999
Q ss_pred HhhccCC-cEEEE-EECCCcccHh-----h--hccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CC--
Q 000324 572 NRLQMYD-VKVRE-LSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR-- 639 (1665)
Q Consensus 572 ~~~~~~g-i~V~~-ltGd~~~~~~-----~--~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~r-- 639 (1665)
++....| ..+.. ++|..+.... . ..+.+|+|+|.. .+.++...... -++++|++|.+|.+.- .+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccH
Confidence 8775444 33333 5665443321 1 236899999987 34333321111 2579999999997642 11
Q ss_pred ----------chHHHHH--HHHHHHHHh---------------------hccCCeeEEEEcccCCChH----HHHHHHhc
Q 000324 640 ----------GPVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYE----DVALFLRV 682 (1665)
Q Consensus 640 ----------g~~le~i--v~r~~~~~~---------------------~~~~~~riV~lSATl~n~~----dv~~~l~~ 682 (1665)
..+++.. +.++.+... ...+..++|..|||..... -+...|+.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 1111110 011111110 1234568899999986532 33344443
Q ss_pred cccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHHHhCCCeEEEEecC---hhHHHHHHHHHHHHhhh
Q 000324 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALE 759 (1665)
Q Consensus 683 ~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~ 759 (1665)
... ....-+...+-.+.......+ +.+ +.+.. +.-.||||+. +..++.++..|+..+.+
T Consensus 303 evG---------~~~~~LRNIvD~y~~~~~~e~-------~~e-lvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 303 EVG---------SGGEGLRNIVDIYVESESLEK-------VVE-LVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred ccC---------ccchhhhheeeeeccCccHHH-------HHH-HHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 322 211222211111111111111 111 22223 4578999999 88888899988887654
Q ss_pred ccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecc----ccccccC
Q 000324 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVN 835 (1665)
Q Consensus 760 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~----tla~GVd 835 (1665)
. ...|++ +...++.|..|+++|||..+ ++.||+|
T Consensus 365 a-------------------------------------~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 365 A-------------------------------------ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred E-------------------------------------EEeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 3 333652 36788999999999999874 7999999
Q ss_pred CCc-eEEEEecccccCCCC
Q 000324 836 LPA-HTVIIKGTQIYNPEK 853 (1665)
Q Consensus 836 lP~-v~vVI~~t~~yd~~~ 853 (1665)
+|. +.++|- |..|+
T Consensus 403 LP~rirYaIF----~GvPk 417 (1187)
T COG1110 403 LPHRIRYAVF----YGVPK 417 (1187)
T ss_pred chhheeEEEE----ecCCc
Confidence 997 455554 77775
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-14 Score=178.00 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=114.3
Q ss_pred ccchhHHHHHh------cCCCCC---CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 000324 1326 ALRNPLYEALY------QGFKHF---NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (1665)
Q Consensus 1326 ~L~~~~~~~l~------~~f~~~---~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I 1396 (1665)
++..+....+. .||..| +|+|.|+++.+..+.+ +++.|+||+|||++|.+|++..+.. +. .+++|
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IV 141 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLV 141 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEE
Confidence 34444555544 278888 9999999999998777 9999999999999999999987765 22 48899
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc-cCCCcEEEEChhhH-HHHHHhhhccccC-------CCccE
Q 000324 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRWKQRKYV-------QQVSL 1467 (1665)
Q Consensus 1397 ~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~~~~~~l-------~~v~l 1467 (1665)
+||++||.|..+.+. .+...+|++++.+.|+.+...+. .-.+||+||||+++ .++++.. ...+ ..+.+
T Consensus 142 TpTrELA~Qdae~m~-~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~--~~~~~~~~~vqr~~~~ 218 (970)
T PRK12899 142 TVNDYLAQRDCEWVG-SVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDN--SIATRKEEQVGRGFYF 218 (970)
T ss_pred eCCHHHHHHHHHHHH-HHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCC--CCCcCHHHhhcccccE
Confidence 999999999999887 67777899999999998876431 22689999999999 8887752 1222 35689
Q ss_pred EEeecccccC
Q 000324 1468 FIIDELHLIG 1477 (1665)
Q Consensus 1468 lViDEaH~l~ 1477 (1665)
+||||||.|+
T Consensus 219 ~IIDEADsmL 228 (970)
T PRK12899 219 AIIDEVDSIL 228 (970)
T ss_pred EEEechhhhh
Confidence 9999999775
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-12 Score=157.57 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--..-.++.+ -|....||+|||+++.+|++..... +..+.+++|+--||.+-++.+...+
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 5678888887776654 3778999999999999998877654 3468899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|..+.. +......+.+.||||||.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3445899999999874 55544431 1223455789999999966
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=164.60 Aligned_cols=128 Identities=17% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--.--.+ +.+ -+..++||+|||++|.+|++-.... +. .+-+++||..||.|.++.+. .+...+|+
T Consensus 81 ~~~dvQlig~l~L-~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~-~l~~~LGl 151 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEG--KIAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMG-PLYEFLGL 151 (830)
T ss_pred CCCccHHHhhHHh-cCC--chhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHH-HHHhhcCC
Confidence 4455554444333 322 4899999999999999999633333 22 46699999999999999887 66677899
Q ss_pred EEEEEeCCCccchh-ccCCCcEEEEChhhH-HHHHHhhhc----cccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~----~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.++|+.+...+ ..-.++|+++||+++ .++++.... ....+.+.++||||||.++
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99999998776633 234589999999999 667764221 1235679999999999764
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=146.15 Aligned_cols=170 Identities=20% Similarity=0.259 Sum_probs=119.1
Q ss_pred CeeEEEEcccCCChHHHHHHHhccccCceEEecCCCccccceEEEEeeecCchhHHHHHHHHHHHHHHHH-HhCCCeEEE
Q 000324 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLI 738 (1665)
Q Consensus 660 ~~riV~lSATl~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~vLV 738 (1665)
..|+|..|||..+++ +..- . -..+..-.||.-|-.-.+.+.... .+... ++..+.. ...+.++||
T Consensus 386 ~~q~i~VSATPg~~E-~e~s------~-~~vveQiIRPTGLlDP~ievRp~~--~QvdD----L~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYE-LEQS------G-GNVVEQIIRPTGLLDPEIEVRPTK--GQVDD----LLSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChHH-HHhc------c-CceeEEeecCCCCCCCceeeecCC--CcHHH----HHHHHHHHHhcCCeEEE
Confidence 568999999976543 2111 1 012233445544433222222221 12222 2223333 334679999
Q ss_pred EecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhC
Q 000324 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (1665)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~ 818 (1665)
-+-|++-++.+..+|.+.+.. +.+.|+.+..-+|..++...+.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gik-------------------------------------v~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIK-------------------------------------VRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCce-------------------------------------EEeeeccchHHHHHHHHHHHhc
Confidence 999999999999999887643 6788999999999999999999
Q ss_pred CCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCC
Q 000324 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
|.++|||.-+.|-.|+|+|.|..|.- .|..+.++ --|-.+++|-+|||.|. ..|.+|++...
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998865 55543222 12778899999999995 57888887654
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=157.42 Aligned_cols=365 Identities=18% Similarity=0.205 Sum_probs=210.7
Q ss_pred eeCCCCCccccCCCceEEecCCCCCCCCCCCC--CccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCC--cEEEEc
Q 000324 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNE--KLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSAD--NILLCA 518 (1665)
Q Consensus 443 ~~lp~g~~~~~~~~~eei~vp~~~~~~~~~~~--~l~~i~~Lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~--nvlv~A 518 (1665)
+.+...+....+|.+-|+..|-..-..+..+. +-+.|. | +.-..++|+|.+++...+.++. +-||+.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~id-L--------KPst~iRpYQEksL~KMFGNgRARSGiIVL 327 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDID-L--------KPSTQIRPYQEKSLSKMFGNGRARSGIIVL 327 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcC-c--------CcccccCchHHHHHHHHhCCCcccCceEEE
Confidence 34444444445566666666654433332211 111221 1 2245789999999999987643 678889
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhhhccc
Q 000324 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEET 598 (1665)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~ 598 (1665)
|.|+|||++..-++.. + +.++|+++..---+.|+...|..+..--.-.++.+|.|..-.. ..++
T Consensus 328 PCGAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~--~~~~ 391 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF--PSGA 391 (776)
T ss_pred ecCCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC--CCCC
Confidence 9999999987655432 1 2368999998888999988888765444456888888765322 2578
Q ss_pred cEEEeChhhHHHHHhhcC------CCccccceeEEEEeccccccc-CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 599 QIIVTTPEKWDIITRKSG------DRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 599 ~IiV~TPekld~l~r~~~------~~~~l~~v~liIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
.|+|+|..++..-.+++. +...-+..+++|+||+|.+.. .+.-++. .+ +.+++ +||+|||-
T Consensus 392 gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls--------iv---~aHcK-LGLTATLv 459 (776)
T KOG1123|consen 392 GVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS--------IV---QAHCK-LGLTATLV 459 (776)
T ss_pred cEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH--------HH---HHHhh-ccceeEEe
Confidence 899999875422222211 111224578999999998754 2222222 11 22233 89999985
Q ss_pred ChH----H----------HHHHHhccccCceEEecCCCccccceEEEEeeecC-chhHH--HHHHHH----HHHHHHHHH
Q 000324 672 NYE----D----------VALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-KPLQR--FQLMND----LCYEKVVAV 730 (1665)
Q Consensus 672 n~~----d----------v~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~~~~--~~~~~~----~~~~~i~~~ 730 (1665)
..+ | -++|+.......+-.+....--+|....|+.-... +..++ +..||. .|--.+.-+
T Consensus 460 REDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H 539 (776)
T KOG1123|consen 460 REDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH 539 (776)
T ss_pred eccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH
Confidence 321 1 24555443222222222111112221111100000 00000 011211 111112222
Q ss_pred h-CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHH
Q 000324 731 A-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (1665)
Q Consensus 731 ~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR 809 (1665)
. .+.++|||..+.-.....|.. .|--+++|..++.+|
T Consensus 540 E~RgDKiIVFsDnvfALk~YAik------------------------------------------l~KpfIYG~Tsq~ER 577 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIK------------------------------------------LGKPFIYGPTSQNER 577 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHH------------------------------------------cCCceEECCCchhHH
Confidence 2 356888888765443333322 223456999999999
Q ss_pred HHHHHHHhC-CCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC--CC--ceEEEE
Q 000324 810 QLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DS--YGEGII 884 (1665)
Q Consensus 810 ~~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~--~G~~ii 884 (1665)
..+++.|+- ..++.++-..+...++|+|..+|+|.-...|. |..+=.||.||.-|+.. |. ...-|.
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHHHHHhhcCccccceeeee
Confidence 999999985 56888899999999999999999998555444 55678899998777532 11 234455
Q ss_pred EeCCCcHHHHH
Q 000324 885 ITGHSELRYYL 895 (1665)
Q Consensus 885 l~~~~~~~~y~ 895 (1665)
+++.+..+.|-
T Consensus 649 LVS~DTqEM~Y 659 (776)
T KOG1123|consen 649 LVSKDTQEMYY 659 (776)
T ss_pred eeecchHHHHh
Confidence 66666655444
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=166.88 Aligned_cols=330 Identities=15% Similarity=0.053 Sum_probs=191.4
Q ss_pred ccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh---
Q 000324 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (1665)
Q Consensus 518 APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~--- 594 (1665)
+.+|||||.+|+-.+-..+.. +..+|+++|..+|+.|+.++|+++|+ +..|..++++.+...+.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~-----------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA-----------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 335999999998888877765 33699999999999999999999885 25688899887655432
Q ss_pred ----hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccc--cCCchHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000324 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 595 ----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~--d~rg~~le~iv~r~~~~~~~~~~~~riV~lSA 668 (1665)
..+.+|+|+|- +.-...+.++++|||||=|--. ++++|.+.. |-.........++.+|+-||
T Consensus 234 ~~~~~G~~~IViGtR---------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha---RdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGTR---------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA---REVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEcc---------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccH---HHHHHHHHHHcCCcEEEECC
Confidence 24678999993 3334567889999999999542 245555432 11111122356889999999
Q ss_pred cCCChHHHHHHHhccccCceEEecCC---CccccceEEEEeeecC----chhHHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 000324 669 TLPNYEDVALFLRVNLEKGLFYFDNS---YRPVPLSQQYIGIQVK----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (1665)
Q Consensus 669 Tl~n~~dv~~~l~~~~~~~~~~f~~~---~rpv~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~vLVFv~ 741 (1665)
|. ..+ .|..+.... ....... .+...-..++++.... +....-..+...+++.+.+....+|+|||+|
T Consensus 302 TP-Sle---s~~~~~~g~-~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~ln 376 (665)
T PRK14873 302 AR-TAE---AQALVESGW-AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVP 376 (665)
T ss_pred CC-CHH---HHHHHhcCc-ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEec
Confidence 94 333 333332111 1111111 0110111223322110 0000000134455666666666559999999
Q ss_pred ChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhh---------ccc--------------cchhhhhcCCcEE
Q 000324 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD---------MVK--------------SNDLKDLLPYGFA 798 (1665)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~---------~~~--------------~~~l~~ll~~gv~ 798 (1665)
.|..+-.+...=+.....+......+..+.......+..+. .|. .+.|+.+++
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP---- 452 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP---- 452 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC----
Confidence 99877665555444444444333333322111111122221 111 122333333
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCeEEecc----ccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCC
Q 000324 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~----tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (1665)
....-+.|++.+++.|. ++.+|||+|. .++ | ++ ...+|++.+...+.+..+-.+-...-++|-+|||||.
T Consensus 453 --~~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~-~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~ 526 (665)
T PRK14873 453 --GVPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY-GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPR 526 (665)
T ss_pred --CCCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc-eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCC
Confidence 11222345566888997 5899999998 666 3 22 2334555544444444444555678889999999996
Q ss_pred CCCCceEEEEEeCCC
Q 000324 875 QYDSYGEGIIITGHS 889 (1665)
Q Consensus 875 g~d~~G~~iil~~~~ 889 (1665)
. ..|+++|.+.++
T Consensus 527 ~--~~G~V~iq~~p~ 539 (665)
T PRK14873 527 A--DGGQVVVVAESS 539 (665)
T ss_pred C--CCCEEEEEeCCC
Confidence 4 779999886433
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-11 Score=155.38 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++.+ -|.-..||+|||+++.+|++-.... +..+.+++|+.-||.+-+..+...+
T Consensus 82 ~~ydVQliGg~~-Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHEG--KIAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hccC--ccccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 455666544333 3332 5888999999999999999876554 3468899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+.++|+.+... +..-.++|+++|..-+ |.|..+.. .......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999999999876543 3445799999999874 55544421 1233467899999999976
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=132.36 Aligned_cols=141 Identities=29% Similarity=0.368 Sum_probs=102.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
+++++++|||+|||.+++..+.+....+ ...+++|++|+++++.++...+...... ++.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 3689999999999999998888876542 2348999999999999999999887765 67888888876554
Q ss_pred Hhh---hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000324 592 RQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 592 ~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSA 668 (1665)
... ....+|+++|++.+........ ......+++|+||+|.+......... ...........+++++||
T Consensus 71 ~~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~sa 142 (144)
T cd00046 71 QQEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSA 142 (144)
T ss_pred HHHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEec
Confidence 432 4689999999998643333322 23456889999999998753211110 111122467789999999
Q ss_pred cC
Q 000324 669 TL 670 (1665)
Q Consensus 669 Tl 670 (1665)
|+
T Consensus 143 Tp 144 (144)
T cd00046 143 TP 144 (144)
T ss_pred cC
Confidence 94
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=157.54 Aligned_cols=421 Identities=17% Similarity=0.128 Sum_probs=247.7
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEE
Q 000324 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583 (1665)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ 583 (1665)
+-.+...++.+++-+.||+|||..+...||..+..+... ..+.+++..|++..+..+++++..--. -.++.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g------~~~na~v~qprrisaisiaerva~er~---e~~g~ 456 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG------ASFNAVVSQPRRISAISLAERVANERG---EEVGE 456 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc------ccccceeccccccchHHHHHHHHHhhH---Hhhcc
Confidence 334566778899999999999999999999998875321 245688899999999999998875322 12222
Q ss_pred EECCCcccHh--hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCe
Q 000324 584 LSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (1665)
Q Consensus 584 ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~ 661 (1665)
..|-...-.. ....--|+.||-| .+.|... .-+..+.++|+||+|...- -+ .++..+.+-+..+.+.+
T Consensus 457 tvgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiherdv-~~----dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 457 TCGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHERDV-DT----DFVLIVLREMISTYRDL 526 (1282)
T ss_pred cccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhhcc-ch----HHHHHHHHhhhccchhh
Confidence 2221111111 1123458899998 5666554 3456789999999996532 12 22223333344567789
Q ss_pred eEEEEcccCCChHHHHHHHhccccCceEE------------------ecCCCccccceEEEEee----------------
Q 000324 662 RLVGLSATLPNYEDVALFLRVNLEKGLFY------------------FDNSYRPVPLSQQYIGI---------------- 707 (1665)
Q Consensus 662 riV~lSATl~n~~dv~~~l~~~~~~~~~~------------------f~~~~rpv~l~~~~~~~---------------- 707 (1665)
+++++|||+ |.+-+..|++..+...+.. |.+ -++.+....+...
T Consensus 527 ~v~lmsatI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp-~~~~~~k~k~~~~~~~~~~ddK~~n~n~~ 604 (1282)
T KOG0921|consen 527 RVVLMSATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVP-SEPSQKKRKKDDDEEDEEVDDKGRNMNIL 604 (1282)
T ss_pred hhhhhhccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccC-CCcCccchhhcccccCchhhhcccccccc
Confidence 999999998 5566777776543211100 000 0111111111000
Q ss_pred ecCch-hHHHHHHHH--------HHHHHHHHHh----CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhH
Q 000324 708 QVKKP-LQRFQLMND--------LCYEKVVAVA----GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774 (1665)
Q Consensus 708 ~~~~~-~~~~~~~~~--------~~~~~i~~~~----~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~ 774 (1665)
..... .....+|.. -+.+++.... -.+-++||.+.-.....+..++......
T Consensus 605 ~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f--------------- 669 (1282)
T KOG0921|consen 605 CDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF--------------- 669 (1282)
T ss_pred cChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh---------------
Confidence 00000 000001100 0111222111 1567899999988888887777654321
Q ss_pred HHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCC--C
Q 000324 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP--E 852 (1665)
Q Consensus 775 ~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~--~ 852 (1665)
+++-.+.+...|+.+...++..|.+....|..+++++|.++...+.+-++..||.....|-. .
T Consensus 670 ---------------g~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~ 734 (1282)
T KOG0921|consen 670 ---------------GQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFT 734 (1282)
T ss_pred ---------------ccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeec
Confidence 12223455666999999999999999999999999999999999999998888875433321 1
Q ss_pred ------CCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCccccchhHhhHHHHHHHHHhcccc
Q 000324 853 ------KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQ 926 (1665)
Q Consensus 853 ------~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~piES~l~~~l~d~lnaeI~~g~i~ 926 (1665)
.-..++.|.....||.||+||. +.|.|+.+|+.-..+.+..-... .+..+...|+.+-.
T Consensus 735 s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~t~----------em~r~plhemalTi-- 799 (1282)
T KOG0921|consen 735 SHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHGTA----------EMFRTPLHEIALTI-- 799 (1282)
T ss_pred cccceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHHhcCcH----------hhhcCccHHHHhhH--
Confidence 1134788999999999999996 68999999886555444332111 11111111111100
Q ss_pred ChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHcCCcccccCCCccccChHHHHHHHh
Q 000324 927 NAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006 (1665)
Q Consensus 927 ~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~ 1006 (1665)
.---...++++.. ..|.++..+.|..+-..|...++.+.++ .+|++|+..++.
T Consensus 800 --------kll~l~SI~~fl~--------------kal~~~p~dav~e~e~~l~~m~~ld~n~-----elt~lg~~la~l 852 (1282)
T KOG0921|consen 800 --------KLLRLGSIGEFLG--------------KALQPPPYDAVIEAEAVLREMGALDAND-----ELTPLGRMLARL 852 (1282)
T ss_pred --------HHHHhhhHHHHHh--------------hccCCCchhhccCchHHHHHhhhhhccC-----cccchhhhhhhc
Confidence 0000000111110 0111112233444445566666665543 789999999999
Q ss_pred cCCHHHHHHHH
Q 000324 1007 YISHGTISTYN 1017 (1665)
Q Consensus 1007 yi~~~t~~~~~ 1017 (1665)
+|.+...+++.
T Consensus 853 ~iep~~~k~~~ 863 (1282)
T KOG0921|consen 853 PIEPRIGKMMI 863 (1282)
T ss_pred cCcccccceee
Confidence 99998877765
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=141.80 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q 000324 1341 HFNPIQTQVFTVLYN------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~ 1414 (1665)
.|+|+|.+|+..+.+ ...++++.+|||||||.++...+.+... +++|++|+..|+.|..+.|. .+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~-~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFD-DF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHH-Hh
Confidence 478999999999884 2567999999999999999865554333 79999999999999999996 44
Q ss_pred cCCCCcEEEEEe------------CCCccc---hhccCCCcEEEEChhhHHHHHHh---------hhccccCCCccEEEe
Q 000324 1415 GQGLGMRVVELT------------GETAMD---LKLLEKGQIIISTPEKWDALSRR---------WKQRKYVQQVSLFII 1470 (1665)
Q Consensus 1415 ~~~~~i~v~~l~------------G~~~~~---~~~l~~~~IIV~TPe~l~~l~r~---------~~~~~~l~~v~llVi 1470 (1665)
... ...+.... ...... .......+++++|..+|....+. ..........++||+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 432 11111100 000000 11334668999999999876553 112234557899999
Q ss_pred ecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1471 DELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1471 DEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
||||++....+ +..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 99999964321 222222 45778999999985
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=129.30 Aligned_cols=140 Identities=31% Similarity=0.449 Sum_probs=102.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh---c
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---L 1435 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~---~ 1435 (1665)
++++.+|||+|||.++...+.+.+... ..+ +++|++|++.++.|....+...+.. +..+..+.+....... .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh
Confidence 589999999999999999988877652 233 8999999999999999988855442 5677777776554432 3
Q ss_pred cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 000324 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl 1511 (1665)
....+|+++|++.+........ ......+++|+||+|.+......... + ..........+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~-----~-~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG-----L-KILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH-----H-HHHhhCCccceEEEEeccC
Confidence 5678999999999876665422 23557899999999999754311100 1 1112235688999999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=155.72 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=87.9
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc-CC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL-EK 1438 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l-~~ 1438 (1665)
-++.++||.|||++|.+|++.+... +. .+.||+|+..||.+..+.+. .+...+|++|.++.|+.+...+.- -.
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~-~l~~~lGlsv~~i~~~~~~~~r~~~Y~ 171 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNR-PLFEFLGLTVGINVAGLGQQEKKAAYN 171 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHH-HHHHhcCCeEEEecCCCCHHHHHhcCC
Confidence 5899999999999999999866655 22 59999999999999988776 566678999999999877654433 37
Q ss_pred CcEEEEChhhH-HHHHHhh-hc---cccCCCccEEEeecccccC
Q 000324 1439 GQIIISTPEKW-DALSRRW-KQ---RKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~-~~---~~~l~~v~llViDEaH~l~ 1477 (1665)
+||+++||+.+ .+++|.. .. ......+.++||||+|.++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 89999999998 6666642 11 1123678999999999765
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-11 Score=155.50 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHc-CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1340 KHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~-~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
..|.|+|..+...++. ...++|+.-..|-|||+-+.+.+-..+.. .... ++|||||. .|+.|+..++.++|.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~--- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN--- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC---
Confidence 3699999999887654 23469999999999999997666555544 3334 89999997 899999999987875
Q ss_pred CcEEEEEeCCCccc-----hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-chhHHHHHHHHH
Q 000324 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-g~~~e~~~srl~ 1492 (1665)
+.+..+.++.... ...+...+++|+|.+.+..-.. +.....-...+++|+||||++.... .+.- ....+.
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~-~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~--~y~~v~ 299 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ-RLEQALAAEWDLLVVDEAHHLVWSEEAPSR--EYQVVE 299 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH-HHHHHhhcCCCEEEEechhhhccCCCCcCH--HHHHHH
Confidence 3444444432111 1233456899999776543111 1111122468999999999996321 1111 122233
Q ss_pred HHHhhcCCCCeEEEEcccCCC
Q 000324 1493 YIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1493 ~i~~~~~~~~riI~lSATl~n 1513 (1665)
.+.. ....+++||||+..
T Consensus 300 ~La~---~~~~~LLLTATP~q 317 (956)
T PRK04914 300 QLAE---VIPGVLLLTATPEQ 317 (956)
T ss_pred HHhh---ccCCEEEEEcCccc
Confidence 3322 23467899999863
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-10 Score=142.50 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=55.0
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh-cc--CCcEEE
Q 000324 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QM--YDVKVR 582 (1665)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~-~~--~gi~V~ 582 (1665)
.++..+..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+.... +. ..+++.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 3456677899999999999999999999876532 13589999999999999999887655 22 244555
Q ss_pred EEEC
Q 000324 583 ELSG 586 (1665)
Q Consensus 583 ~ltG 586 (1665)
.+.|
T Consensus 82 ~lkG 85 (636)
T TIGR03117 82 FFPG 85 (636)
T ss_pred EEEC
Confidence 4443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-12 Score=130.07 Aligned_cols=105 Identities=33% Similarity=0.509 Sum_probs=91.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHH
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~ 811 (1665)
.++++||||+++..++.+++.|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4679999999999999999888651 145889999999999999
Q ss_pred HHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
+.+.|.+|..+||+||.++++|+|+|...+||. ++++. +..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDLPW------SPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCCCC------CHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999999988887 55543 7889999999999998 47777653
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-12 Score=120.11 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=67.8
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccC
Q 000324 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 793 l~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (1665)
....+.++||+|+..+|..+++.|.+|..+|||||+++++|||+|++++||. |+++. +..+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 3467899999999999999999999999999999999999999999999999 77764 8899999999999
Q ss_pred CCC
Q 000324 873 RPQ 875 (1665)
Q Consensus 873 R~g 875 (1665)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=158.76 Aligned_cols=278 Identities=20% Similarity=0.199 Sum_probs=164.7
Q ss_pred CCC-CHHHHHHHHHHHc--CCC-cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHF-NPIQTQVFTVLYN--TDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~-~~iQ~qa~~~ll~--~~d-nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.+. .+.|..++..+.. ... .+++.||||+|||.+++.+++..+... .....|++++.|++.++++++++++..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 344 8999999998875 233 689999999999999999988877762 11233999999999999999999996665
Q ss_pred CCCCcEEEE-EeCCCccchh-----------------ccCCCcEEEEChhhHHHHHHhhhccccC--CCccEEEeecccc
Q 000324 1416 QGLGMRVVE-LTGETAMDLK-----------------LLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHL 1475 (1665)
Q Consensus 1416 ~~~~i~v~~-l~G~~~~~~~-----------------~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~llViDEaH~ 1475 (1665)
.. + .... ++|....... ......++++||-++...+-.......+ -...++|+||+|.
T Consensus 272 ~~-~-~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 272 LF-S-VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred cc-c-cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 42 1 1111 3343222100 1112256677777665532211111001 2357999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--HHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhh
Q 000324 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1476 l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+.... ....++ .+..... ..+..+|++|||+|.. +.+...++.......+.. ..+..-+..+.........
T Consensus 350 ~~~~~--~~~~l~-~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~ 422 (733)
T COG1203 350 YADET--MLAALL-ALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVDVE 422 (733)
T ss_pred hcccc--hHHHHH-HHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchhhh
Confidence 98663 222232 2322222 3478899999999984 344444444322222111 0000000000000000000
Q ss_pred HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhc
Q 000324 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (1665)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (1665)
.... ......+......+++++|-|||++.|..++..|... -.
T Consensus 423 ~~~~---~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------------------------------~~ 465 (733)
T COG1203 423 DGPQ---EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------------------------------GP 465 (733)
T ss_pred hhhh---HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CC
Confidence 0000 0112223344467889999999999999999887321 11
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHh----cCCceEEEC
Q 000324 1634 HGVGYLHEGLNKTDQEVVSALFE----AGKIKICYR 1665 (1665)
Q Consensus 1634 ~gI~~~H~~m~~~dR~~v~~~F~----~G~i~VLVC 1665 (1665)
.+.++||.+...+|...++.++ .+.-.|+|+
T Consensus 466 -~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVa 500 (733)
T COG1203 466 -KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVA 500 (733)
T ss_pred -CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEE
Confidence 5899999999999999999654 456666664
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-11 Score=147.94 Aligned_cols=265 Identities=20% Similarity=0.199 Sum_probs=163.3
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1330 ~~~~~l~~~--f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
+.++.+|.. ...|...|.-....++.|.. .-+.||||.|||.--++..+..-.+ +. +++||+||..|+.|++
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg~S-FaiiAPTGvGKTTfg~~~sl~~a~k---gk--r~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRGKS-FAIIAPTGVGKTTFGLLMSLYLAKK---GK--RVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCc-eEEEcCCCCchhHHHHHHHHHHHhc---CC--eEEEEecCHHHHHHHH
Confidence 345666652 34899999999999998666 9999999999998766555433322 34 9999999999999999
Q ss_pred HHHHHHhcCCC---CcEEEEEeCCCccch-----hccCC--CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1408 RDWEIKFGQGL---GMRVVELTGETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1408 ~~~~~~~~~~~---~i~v~~l~G~~~~~~-----~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+++. .|+... ++.++ ++|..+... ..+++ .||+|+|..-+..-..... --+++++++|++|.++
T Consensus 143 ~kl~-~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~----~~kFdfifVDDVDA~L 216 (1187)
T COG1110 143 ERLK-KFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS----KLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHH-HHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc----ccCCCEEEEccHHHHH
Confidence 9999 666443 34444 777755542 24444 4899999765543322211 1368999999999775
Q ss_pred CCC----------c---hhH----HHHH-----------HHHHHHHh--------hcCCCCeEEEEcccCCChH----HH
Q 000324 1478 GQG----------G---PVL----EVIV-----------SRMRYIAS--------QVENKIRIVALSTSLANAK----DL 1517 (1665)
Q Consensus 1478 ~~~----------g---~~~----e~~~-----------srl~~i~~--------~~~~~~riI~lSATl~n~~----dl 1517 (1665)
..+ | ..+ +.+. .+++.+.. +-.+..++|..|||..... -+
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 321 1 111 1110 11111111 1124578899999986532 23
Q ss_pred HHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCc---hHHHHHHHHHH
Q 000324 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPS---RKYVRLTAVDL 1594 (1665)
Q Consensus 1518 ~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~s---r~~a~~la~~L 1594 (1665)
.+.+ +|.+.....-+.-.+..+... ........+++.+ +...||||+. +..++.++..|
T Consensus 297 ReLl--------gFevG~~~~~LRNIvD~y~~~--------~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~L 358 (1187)
T COG1110 297 RELL--------GFEVGSGGEGLRNIVDIYVES--------ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYL 358 (1187)
T ss_pred HHHh--------CCccCccchhhhheeeeeccC--------ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHH
Confidence 3333 344333222222111111111 1111222333442 3458999999 77777777666
Q ss_pred HHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
+..+..+..+|++ +...++.|..|+++|||
T Consensus 359 -----------------------------------r~~Gi~a~~~~a~-----~~~~le~F~~GeidvLV 388 (1187)
T COG1110 359 -----------------------------------RSHGINAELIHAE-----KEEALEDFEEGEVDVLV 388 (1187)
T ss_pred -----------------------------------HhcCceEEEeecc-----chhhhhhhccCceeEEE
Confidence 3356678888873 37889999999999998
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=138.00 Aligned_cols=151 Identities=24% Similarity=0.297 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
+|+++|.+++..+.. ...++++.||||||||.++...+.+... ++++++|++.|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 579999999999874 2578999999999999999866665542 69999999999999999
Q ss_pred HHHHhhccCCcEEEEEE------------CCCcccH---hhhccccEEEeChhhHHHHHhhcC---------CCccccce
Q 000324 569 NLSNRLQMYDVKVRELS------------GDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~lt------------Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~---------~~~~l~~v 624 (1665)
.|...... ...+.... ....... ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 99654332 11111110 0001111 113467899999999855544321 11234567
Q ss_pred eEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 625 ~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
++||+||||......+ +..++. .....+|+||||++
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 8999999998753211 222222 56778999999964
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-11 Score=151.69 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=175.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
+.-++|++|||||||..--..++..-.. ..+ ++.+.-|.|--|..+.++..+.++...|-.|+.-.-- +...-
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf---e~~~s 137 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF---ESKVS 137 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe---eccCC
Confidence 5668999999999999866666554432 234 8999999999999999998888887666555432211 11122
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHH
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~d 1516 (1665)
....|-+.|.|.|...+.. ...+..++.||+||+|.=. -....++.-++.+....+.+.++|.+|||+ |++.
T Consensus 138 ~~Trik~mTdGiLlrei~~---D~~Ls~ys~vIiDEaHERS----l~tDilLgllk~~~~~rr~DLKiIimSATl-d~~r 209 (845)
T COG1643 138 PRTRIKVMTDGILLREIQN---DPLLSGYSVVIIDEAHERS----LNTDILLGLLKDLLARRRDDLKLIIMSATL-DAER 209 (845)
T ss_pred CCceeEEeccHHHHHHHhh---CcccccCCEEEEcchhhhh----HHHHHHHHHHHHHHhhcCCCceEEEEeccc-CHHH
Confidence 4568999999998876653 4568999999999999321 112236666777777777789999999998 7888
Q ss_pred HHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHH
Q 000324 1517 LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLM 1595 (1665)
Q Consensus 1517 l~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l-~~~~~~IVFv~sr~~a~~la~~L~ 1595 (1665)
++++++..+ ++. ...|..|++++...-...++. +.......+..++ ...+.+|||.+..+..+.++..|.
T Consensus 210 fs~~f~~ap--vi~--i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 210 FSAYFGNAP--VIE--IEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred HHHHcCCCC--EEE--ecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 999998532 333 344667777776333222221 1111222232332 235669999999999999998885
Q ss_pred H-hcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1596 T-YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1596 ~-~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
. .+. -..-|..+||.|+.++...|++---.|+-+|++
T Consensus 281 ~~~l~--------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVl 318 (845)
T COG1643 281 KAELG--------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVL 318 (845)
T ss_pred hcccc--------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEE
Confidence 3 110 123488999999999999999988888777765
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=153.56 Aligned_cols=299 Identities=18% Similarity=0.227 Sum_probs=189.3
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~---~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
...+|+-|.+|+..+... ....++.+.||||||.+|+-+|-..+.+ +. .+|+++|-.+|..|+.++++.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk--qvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK--QVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC--EEEEEeccccchHHHHHHHHHHhC
Confidence 346889999999998765 4668999999999999999999888887 33 899999999999999999999987
Q ss_pred CCCCcEEEEEeCCCccchh-------ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC--CCCchhHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEV 1486 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~--~~~g~~~e~ 1486 (1665)
.+|+.++++.+...+ ....+.|||+|=. .-...+.++++|||||=|--. ...++.|..
T Consensus 271 ----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS---------AlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 271 ----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS---------ALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred ----CChhhhcccCChHHHHHHHHHHhcCCceEEEEech---------hhcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 578999999887633 2245689999922 233457899999999999543 233444422
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccCCChHHHHHHhcccCC--cEEecCCCC-CccceEEEEeecccchhhHHHHhcChhH
Q 000324 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH--GLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~--~~~~f~~~~-rpv~l~i~i~~~~~~~~~~~~~~~~k~~ 1563 (1665)
..+..+.++ ..+.++|+-|||++ +-.|...... ..+.+.... +..+..+++........... .....+.
T Consensus 338 --RdvA~~Ra~-~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS~~L 409 (730)
T COG1198 338 --RDVAVLRAK-KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLSPAL 409 (730)
T ss_pred --HHHHHHHHH-HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCCHHH
Confidence 233333222 34788999999974 3334433222 223332222 12123333322221111110 1156788
Q ss_pred HHHHHHHhcCCCCEEEEeCchHHHHHHHHHH------------------------HHhcccCCCcccccccCCcccchhh
Q 000324 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDL------------------------MTYSSMDGDQKSAFLLWPAEEVEPF 1619 (1665)
Q Consensus 1564 ~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L------------------------~~~~~~~~~~~~~~l~~~~~~l~~~ 1619 (1665)
+..|.+.+..+.++|+|+|.|--+-.+.-.= +.+|............|..+.+...
T Consensus 410 l~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~ 489 (730)
T COG1198 410 LEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAV 489 (730)
T ss_pred HHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEe
Confidence 8999999999999999999987543222110 1112111111111222222222222
Q ss_pred ---HhhhhHHHHHHHh-cccEEEEcCCCCHHH--HHHHHHHHhcCCceEEE
Q 000324 1620 ---IDNIQEEMLKATL-RHGVGYLHEGLNKTD--QEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1620 ---~~~i~d~~L~~~l-~~gI~~~H~~m~~~d--R~~v~~~F~~G~i~VLV 1664 (1665)
.+++ .+.|+..+ +..|..+-++.+... =+..+..|.+|++.|||
T Consensus 490 G~Gteri-eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILi 539 (730)
T COG1198 490 GPGTERI-EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILI 539 (730)
T ss_pred cccHHHH-HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeee
Confidence 2222 24455555 678888888866533 46778999999999997
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-10 Score=145.90 Aligned_cols=161 Identities=22% Similarity=0.199 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHc----CC--C-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 497 NRVQSRVYKSALS----SA--D-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~----~~--~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
..+|-+|++.+.. +. . =++-.|.||||||++=. =|+..+... ..+++..+..-.|.|.-|.-+.
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~--------~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDD--------KQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCC--------CCCceEEEEccccceeccchHH
Confidence 4689999987754 11 1 24456999999998543 233333321 2467888899999999999888
Q ss_pred HHHhhccCCcEEEEEECCCccc---------------------------Hh---------------------------hh
Q 000324 570 LSNRLQMYDVKVRELSGDQTLT---------------------------RQ---------------------------QI 595 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~---------------------------~~---------------------------~~ 595 (1665)
++++++--.-.+++++|+.... .+ ..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 8888753333455555532100 00 00
Q ss_pred ccccEEEeChhhHHHHH---hhcCCC-cccc-ceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000324 596 EETQIIVTTPEKWDIIT---RKSGDR-TYTQ-LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 596 ~~~~IiV~TPekld~l~---r~~~~~-~~l~-~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl 670 (1665)
-.+.|+|||+..+-... |..... ..+. .-+.|||||+|.. .+..-.++.+++..... -+.++++|||||
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY----D~~~~~~L~rlL~w~~~--lG~~VlLmSATL 634 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY----EPEDLPALLRLVQLAGL--LGSRVLLSSATL 634 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC----CHHHHHHHHHHHHHHHH--cCCCEEEEeCCC
Confidence 13569999999863322 211100 0011 1268999999965 44455566666665444 467899999999
Q ss_pred CC
Q 000324 671 PN 672 (1665)
Q Consensus 671 ~n 672 (1665)
|.
T Consensus 635 P~ 636 (1110)
T TIGR02562 635 PP 636 (1110)
T ss_pred CH
Confidence 96
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=143.51 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=111.0
Q ss_pred eEEEEcccCCCh---HHHHHHHhccc--cCceEEecCCCccccceEEEEee-e-c-CchhHHHHHHHHHHHHHHHHHhCC
Q 000324 662 RLVGLSATLPNY---EDVALFLRVNL--EKGLFYFDNSYRPVPLSQQYIGI-Q-V-KKPLQRFQLMNDLCYEKVVAVAGK 733 (1665)
Q Consensus 662 riV~lSATl~n~---~dv~~~l~~~~--~~~~~~f~~~~rpv~l~~~~~~~-~-~-~~~~~~~~~~~~~~~~~i~~~~~~ 733 (1665)
.+|++||||... ..+.+.++... ......+.+.|..-.....++.- . . .........+.+.+.+.+ . . +
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~-~-~-~ 534 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELL-E-K-H 534 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHH-h-c-C
Confidence 468889998753 33444455532 12233344433221111111111 0 1 112223334444443333 2 3 4
Q ss_pred CeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHH
Q 000324 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (1665)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~ 813 (1665)
+.+|||++|.+....++..|..... ..+.. ++. ..|..++
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~------------------------------------~~ll~-Q~~---~~~~~ll 574 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLR------------------------------------LMLLV-QGD---QPRQRLL 574 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcC------------------------------------CcEEE-eCC---chHHHHH
Confidence 4589999999999988887764210 11222 332 2466677
Q ss_pred HHHh----CCCCCeEEeccccccccCCCc--eEEEEecccccCCCCC----------------CcccC----CHHHHHhh
Q 000324 814 DLFG----DGHVQVLVSTATLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQM 867 (1665)
Q Consensus 814 ~~F~----~g~i~VLVaT~tla~GVdlP~--v~vVI~~t~~yd~~~g----------------~~~~~----s~~~~~Qr 867 (1665)
+.|+ .|.-.||++|..+..|||+|+ .+.||....||.++.. .|.++ -...+.|.
T Consensus 575 ~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg 654 (697)
T PRK11747 575 EKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQA 654 (697)
T ss_pred HHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 6665 467789999999999999997 4555555566655432 12222 34578899
Q ss_pred hcccCCCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 868 LGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
+||.-|... ..|..+++-..-....|-+.+-+.+|
T Consensus 655 ~GRlIRs~~-D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 655 VGRLIRSEQ-DRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred hccccccCC-ceEEEEEEcccccchhHHHHHHHhCC
Confidence 999999754 47876666665444556544444455
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-10 Score=152.17 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=64.1
Q ss_pred HHHhc-CCCCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1333 EALYQ-GFKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1333 ~~l~~-~f~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
+.++. ||. ++|.|.+..+.++ ..+.++++.||||+|||++|++|++..... +. ++||.+||++|..|++.
T Consensus 237 ~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~--~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 237 KNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EK--PVVISTNTKVLQSQLLE 310 (850)
T ss_pred HhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CC--eEEEEeCcHHHHHHHHH
Confidence 33433 455 8999998666433 345569999999999999999999876552 33 89999999999999876
Q ss_pred -HHHHHhcCCCC--cEEEEEeCC
Q 000324 1409 -DWEIKFGQGLG--MRVVELTGE 1428 (1665)
Q Consensus 1409 -~~~~~~~~~~~--i~v~~l~G~ 1428 (1665)
++. .+.+.++ ++++.+.|.
T Consensus 311 ~~~~-~l~~~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 311 KDIP-LLNEILNFKINAALIKGK 332 (850)
T ss_pred HHHH-HHHHHcCCCceEEEEEcc
Confidence 344 4444333 566665553
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=152.40 Aligned_cols=199 Identities=18% Similarity=0.226 Sum_probs=115.1
Q ss_pred eEEEEcccCCChHHHHHHHhccccCceE---EecCCCccccceEEEEeeecCchh--HHHHHHHHHHHHHHHHHhCCCeE
Q 000324 662 RLVGLSATLPNYEDVALFLRVNLEKGLF---YFDNSYRPVPLSQQYIGIQVKKPL--QRFQLMNDLCYEKVVAVAGKHQV 736 (1665)
Q Consensus 662 riV~lSATl~n~~dv~~~l~~~~~~~~~---~f~~~~rpv~l~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~v 736 (1665)
-+|++||||.....+..+++.......+ ...+.+........+++....... .....+...+.+.+ ... ++.+
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~~~ 482 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREIL-KAS-PGGV 482 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHH-hhc-CCCE
Confidence 5899999999877777777765433222 112222211111122222222111 22233333333322 222 4589
Q ss_pred EEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHH
Q 000324 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (1665)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F 816 (1665)
|||++|.+....++..+...... + ....++.- .+...++.|
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~~---~~~~~l~~f 523 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGED---EREELLEKF 523 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCCC---cHHHHHHHH
Confidence 99999999999888887764311 0 01123433 334566666
Q ss_pred hCCCC-CeEEeccccccccCCCce---EEEEecccccCCCCC----------------Cc----ccCCHHHHHhhhcccC
Q 000324 817 GDGHV-QVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG----------------AW----TELSPLDIMQMLGRAG 872 (1665)
Q Consensus 817 ~~g~i-~VLVaT~tla~GVdlP~v---~vVI~~t~~yd~~~g----------------~~----~~~s~~~~~Qr~GRAG 872 (1665)
..+.- -++|+|..++.|||+|+- .|||. ..||-.+.. .| ....+..+.|.+||+-
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~-~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIV-GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEE-ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 55443 899999999999999985 44554 444443322 11 2235678899999999
Q ss_pred CCCCCCceEEEEEeCCCcHHHHHHhhcCCCc
Q 000324 873 RPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (1665)
|. .+..|..+++-..-....|.+.+...+|
T Consensus 603 R~-~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 603 RS-EDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred cc-CCCceEEEEecccchhhhHHHHHHHhCC
Confidence 94 5668888887766555556666555554
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=154.08 Aligned_cols=154 Identities=17% Similarity=0.232 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~---------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
.+++.|..|+..++. +.++.++++|||||||+++...+...+.. ... +++|+|+|+.+|..|+.+.|.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHH
Confidence 378889999988653 24579999999999999987777655533 223 399999999999999999998
Q ss_pred HHhcCCCCcEEEEEeCCCccch-hccC--CCcEEEEChhhHHHHHHhhhccccCCC-ccEEEeecccccCCCCchhHHHH
Q 000324 1412 IKFGQGLGMRVVELTGETAMDL-KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQ-VSLFIIDELHLIGGQGGPVLEVI 1487 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~~-~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~-v~llViDEaH~l~~~~g~~~e~~ 1487 (1665)
.++.. .+. ..+ ...+. +.+. .+.|+|+|..++......+........ --+||+||||+..... +
T Consensus 315 -~~~~~---~~~-~~~-s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~------~ 382 (667)
T TIGR00348 315 -SLQKD---CAE-RIE-SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE------L 382 (667)
T ss_pred -hhCCC---CCc-ccC-CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH------H
Confidence 44421 010 001 11111 1222 358999999998754333211111111 1289999999875322 2
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1488 ~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
...|+. .+ ++..++|||||+-.
T Consensus 383 ~~~l~~---~~-p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 383 AKNLKK---AL-KNASFFGFTGTPIF 404 (667)
T ss_pred HHHHHh---hC-CCCcEEEEeCCCcc
Confidence 222322 22 35678999999864
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-10 Score=135.38 Aligned_cols=328 Identities=20% Similarity=0.233 Sum_probs=189.4
Q ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
..++++|-+-+..+ +..+-|.|+.-.-|-|||+.. ++.+..+.....-.| --+|++|.-.|. .+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G-------PfLVi~P~StL~-NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG-------PFLVIAPKSTLD-NWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC-------CeEEEeeHhhHH-HHHHHH
Confidence 37889999887764 455668999999999999865 334444433222112 367899987775 456777
Q ss_pred HHhhccCCcEEEEEECCCcccHhh------hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
+++.. +++|..++||..-.... ....+|+|||.|. ..+.... ..--..+++||||+|+|-+. .
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi---~i~dk~~-lk~~~W~ylvIDEaHRiKN~-----~ 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEI---AIKDKSF-LKKFNWRYLVIDEAHRIKNE-----K 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHH---HHhhHHH-HhcCCceEEEechhhhhcch-----h
Confidence 77644 68999999987433221 1368999999995 3222110 01123589999999999753 2
Q ss_pred HHHHHHHHHHhhccCCeeEEEEcccC-C-------------------ChHHHHHHHhccccCc----eEEecC-------
Q 000324 645 SIVARTVRQIETTKEHIRLVGLSATL-P-------------------NYEDVALFLRVNLEKG----LFYFDN------- 693 (1665)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riV~lSATl-~-------------------n~~dv~~~l~~~~~~~----~~~f~~------- 693 (1665)
+.+.++++.+.. .-| ++++.|. . ..+++..|+......+ +.....
T Consensus 306 s~L~~~lr~f~~---~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREFKT---DNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHhcc---cce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 234444443322 233 6677772 1 2356666765421000 000000
Q ss_pred ---------CCccccceEEEEeeec-------------------CchhHHHHHHHH------------------------
Q 000324 694 ---------SYRPVPLSQQYIGIQV-------------------KKPLQRFQLMND------------------------ 721 (1665)
Q Consensus 694 ---------~~rpv~l~~~~~~~~~-------------------~~~~~~~~~~~~------------------------ 721 (1665)
+.-|-.--..|++... .....+...+|-
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 0001000011111110 000000111110
Q ss_pred ------------HHHHHHHH--HhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccc
Q 000324 722 ------------LCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (1665)
Q Consensus 722 ------------~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 787 (1665)
.+.++++. ...+++||||..- ..+-..|.+++.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQm----t~mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQM----TRMLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHH----HHHHHHHHHHHH-----------------------------
Confidence 01122221 1236677777532 122222332221
Q ss_pred hhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCC---CCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHH
Q 000324 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH---VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (1665)
Q Consensus 788 ~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~---i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~ 864 (1665)
+..+...-+-|.++.++|...++.|.... .-.|++|.+.+-|||+-+.++||.+++-|+|.. =
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~----------D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQV----------D 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchh----------h
Confidence 12233455589999999999999997643 457899999999999999999999666666653 4
Q ss_pred HhhhcccCCCCCCCceEEEEEeCCCcHH
Q 000324 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (1665)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (1665)
+|.+-||-|-|..+.-.+|.+++.+..+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 6777777777766788889898887654
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=137.25 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--.--. ++.+ -|.-..||-|||+++.+|+.-.... +..+-+|+..--||.-=+..+...+
T Consensus 78 r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~-----------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALT-----------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhc-----------CCceEEEecchhhhhhhHHHHHHHH
Confidence 556677655543 3332 4789999999999999988644333 2347778888899998888888888
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+....+..... +..-.++|.++|..-| |.|..+.. +......+.+.||||||.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 899999999988765443 3445799999999874 66654432 2233456789999999966
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=144.11 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll----~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++.+|..|+..+. .++..+|++|.||+|||.+|..-|. .|.+....+ |+|+++-+++|+.|.+..+. .|-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r~~~~K--RVLFLaDR~~Lv~QA~~af~-~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIKSGWVK--RVLFLADRNALVDQAYGAFE-DFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHhcchhh--eeeEEechHHHHHHHHHHHH-HhC
Confidence 478999999998764 4677799999999999999955444 444434444 99999999999999999888 443
Q ss_pred CCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhh---hccccCCCccEEEeecccccCCCCchhHHHHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~ 1492 (1665)
.. +-.+..+.+... + ..++|.|+|-..+......- ..+.....+++|||||||+-.-. .++.+++-+.
T Consensus 240 P~-~~~~n~i~~~~~-~----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~---~~~~I~dYFd 310 (875)
T COG4096 240 PF-GTKMNKIEDKKG-D----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS---EWSSILDYFD 310 (875)
T ss_pred CC-ccceeeeecccC-C----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh---hhHHHHHHHH
Confidence 32 233333333211 1 25799999999887655432 12334567999999999975321 1222333222
Q ss_pred HHHhhcCCCCeEEEEcccCCCh
Q 000324 1493 YIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1493 ~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
.+ .+|++||+.+.
T Consensus 311 A~---------~~gLTATP~~~ 323 (875)
T COG4096 311 AA---------TQGLTATPKET 323 (875)
T ss_pred HH---------HHhhccCcccc
Confidence 22 36779998763
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-09 Score=134.70 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.++++|--..-. +. +.-|+-+.||.|||+++.+|+.-.... +..+-+|+++..||..-++.+...+
T Consensus 76 r~ydvQlig~l~-L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDVQLIGGLV-LN--DGKIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCchHhhhhHh-hc--CCccccccCCCCchHHHHHHHHHHHhc-----------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 356667554432 22 337889999999999999988543322 3358899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+...++.+...+ ..-.++|+++|..-+ |.|..+.. .......+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999887765543 345789999999864 65554432 1223456789999999966
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=139.50 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=183.0
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
.-++|+|+|+.+++.++.+ ++.-=+.+..|+|||..++ -|...+. ..+++|++|..+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala------------~~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA------------AARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh------------hhheEeecchHHHHHHHHH
Confidence 3468999999999998754 3333344567999999874 4444443 3589999999999999999
Q ss_pred HHHHhhccCCcEEEEEECCCcccHhh----------------------------hccccEEEeChhhHHHHHhhcCCCcc
Q 000324 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (1665)
Q Consensus 569 ~~~~~~~~~gi~V~~ltGd~~~~~~~----------------------------~~~~~IiV~TPekld~l~r~~~~~~~ 620 (1665)
.|..- +.+.++...+++|...++.. ..+--|+++|...+..+-..- ..-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ--e~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ--EAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH--HcC
Confidence 99874 45567777777665533210 113448899998764443221 234
Q ss_pred ccceeEEEEeccccccc--CCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceE------Eec
Q 000324 621 TQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF------YFD 692 (1665)
Q Consensus 621 l~~v~liIiDEaH~l~d--~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~~~~~~~~~------~f~ 692 (1665)
+..++|||+||||+-.. .-|.. .+...++.. .+.-+..+.+.|+||..-+.+-.+--.......+. .|.
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 67789999999997532 01100 011111100 00112234577788843221111100000000000 111
Q ss_pred CCCcccc---------c---eEEEEeeecCchhHHHH-------------HHHH--HHHHHHHHHhC-------------
Q 000324 693 NSYRPVP---------L---SQQYIGIQVKKPLQRFQ-------------LMND--LCYEKVVAVAG------------- 732 (1665)
Q Consensus 693 ~~~rpv~---------l---~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~i~~~~~------------- 732 (1665)
+.+.... | ..-+..+........++ .... -|+.-+.+..+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 1111100 0 01111111111001110 0000 01222222211
Q ss_pred -CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEec--CCCCHHHH
Q 000324 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH--AGMTRGDR 809 (1665)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~H--agm~~~dR 809 (1665)
..+.|-||.+.+....++..+... +..+... ..++.....+.+-| |.|...+|
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~V--------------------ve~Y~~E----lk~d~~nL~iSi~HvDGtmNal~R 514 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETV--------------------VEAYDEE----LKKDFKNLKISIDHVDGTMNALER 514 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH--------------------HHHHHHH----HHhcCCCceEEeecccccccHHHH
Confidence 113445555555555444443321 1111100 11112334455555 77998888
Q ss_pred HHHHHH---HhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEe
Q 000324 810 QLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (1665)
Q Consensus 810 ~~v~~~---F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (1665)
...+.+ |....++||---..|+.|||+|+.+-||- |||.+ |.-|++|-+||.-|-.. ..-.+||+.
T Consensus 515 ~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~-gK~yGYIIL 583 (1518)
T COG4889 515 LDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAK-GKKYGYIIL 583 (1518)
T ss_pred HHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCc-CCccceEEE
Confidence 544443 46678999999999999999999999997 99988 99999999999999532 223455554
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-09 Score=132.87 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.+.++|--.--.+ +.+ -|.-+.||-|||+++.+|+.-.... +..+-+|++.--||..=++.+...+
T Consensus 85 r~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 4566665444333 322 5889999999999999988765443 3358899999999999999999999
Q ss_pred ccCCcEEEEEECCCcccHh-hhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
..+|++|+...++.+...+ ..-.++|+++|+..+ |.|..+.. .......+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 9999999999887765433 345899999999985 55544432 1234566889999999966
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-08 Score=134.90 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000324 492 GMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~ 568 (1665)
.|..++|.|.+....+ +..++++++-||||+|||++.+.+.|....... ...||+|.+.|.+=..|..+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHH
Confidence 3778899999988765 456788999999999999999999998765431 13578888888888888888
Q ss_pred HHHH
Q 000324 569 NLSN 572 (1665)
Q Consensus 569 ~~~~ 572 (1665)
++++
T Consensus 79 Elk~ 82 (705)
T TIGR00604 79 ELRK 82 (705)
T ss_pred HHHh
Confidence 8877
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-09 Score=127.87 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=168.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHHHHhh--cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~l~~~--~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~ 1433 (1665)
.+..++|.++||||||.-- | +.+... ...+ ++.+.-|.|--|.-++++.....+..+|-.|+.-.- .+.
T Consensus 65 ~nqvlIviGeTGsGKSTQi--p--QyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR---Fed 135 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQI--P--QYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR---FED 135 (674)
T ss_pred HCCEEEEEcCCCCCccccH--h--HHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE---ecc
Confidence 3666899999999999842 2 122221 1234 688999999998888888887777666665543221 011
Q ss_pred hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc--ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccC
Q 000324 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH--LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH--~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl 1511 (1665)
..-....|.+.|-|.|..-. .....+...+.||+|||| .+..+ .++--++.+... .++.++|.+|||+
T Consensus 136 ~ts~~TrikymTDG~LLRE~---l~Dp~LskYsvIIlDEAHERsl~TD------iLlGlLKki~~~-R~~LklIimSATl 205 (674)
T KOG0922|consen 136 STSKDTRIKYMTDGMLLREI---LKDPLLSKYSVIILDEAHERSLHTD------ILLGLLKKILKK-RPDLKLIIMSATL 205 (674)
T ss_pred cCCCceeEEEecchHHHHHH---hcCCccccccEEEEechhhhhhHHH------HHHHHHHHHHhc-CCCceEEEEeeee
Confidence 11134579999999876433 245678999999999999 33322 255556666543 5578999999998
Q ss_pred CChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHH
Q 000324 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTA 1591 (1665)
Q Consensus 1512 ~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la 1591 (1665)
++.-+.++++.- .++.+.. |..|+++.....+..++..... ....+ |... .+.+-+|||.+.+.+.+.++
T Consensus 206 -da~kfS~yF~~a--~i~~i~G--R~fPVei~y~~~p~~dYv~a~~---~tv~~-Ih~~-E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 206 -DAEKFSEYFNNA--PILTIPG--RTFPVEILYLKEPTADYVDAAL---ITVIQ-IHLT-EPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred -cHHHHHHHhcCC--ceEeecC--CCCceeEEeccCCchhhHHHHH---HHHHH-HHcc-CCCCCEEEEeCCHHHHHHHH
Confidence 788899999763 3444443 6667777776655444433221 11111 2222 34456999999999999999
Q ss_pred HHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1592 VDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1592 ~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
..|.......... ...-+..+||.|+.+++..|..---.|.-+|++
T Consensus 276 ~~l~e~~~~~~~~---------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIl 321 (674)
T KOG0922|consen 276 ELLRERAKSLPED---------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVIL 321 (674)
T ss_pred HHHHHHhhhcccc---------------------------CcceeeeecccCCHHHhhccccCCCCCcceEEE
Confidence 8886544322211 111256799999999999999888888888876
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-09 Score=137.03 Aligned_cols=128 Identities=19% Similarity=0.115 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--.--.+.. . -+..+.||+|||+++.+|++..... +. .+-+++|+.-||.|-+..+.. +-..+|+
T Consensus 80 ~~~dvQlig~l~l~~--G-~iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~-~~~~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVLHE--G-NIAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGE-LYRWLGL 150 (796)
T ss_pred CCchhHHHHHHHHhc--C-CcccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHH-HHHhcCC
Confidence 455555554443333 2 3899999999999999999877776 23 688999999999999998874 4456799
Q ss_pred EEEEEeCCCccc-hhccCCCcEEEEChhhHHH-HHHh-h---hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.++|+.+.. .+..-.++|+.+|...+-. ++|. . ..........+.||||+|.++
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 999999987665 3345578999999998732 3332 1 111223467888999999653
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-08 Score=123.10 Aligned_cols=367 Identities=18% Similarity=0.132 Sum_probs=201.6
Q ss_pred CCCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 494 TQLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
..++|+|.+.|.-++.. ..-+|++=..|+|||+...-.|...+.+++.... .-.+.+||+|. .|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc----cccccEEEccH-HHHH
Confidence 47899999999866531 1236777778999999876666666666543211 11478999995 7889
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCccc---Hh-------hhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccc
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLT---RQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~---~~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~ 634 (1665)
-+.++|.+++....+.+..+.|..... .. ..-.+.|++.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 999999998876567777777766530 00 112455778888876322332 2345689999999999
Q ss_pred cccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC--ChHHHHHHHhccccCceEEecCCCccc----cceEEE--Ee
Q 000324 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDNSYRPV----PLSQQY--IG 706 (1665)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~--n~~dv~~~l~~~~~~~~~~f~~~~rpv----~l~~~~--~~ 706 (1665)
+-+...-.+.+ +.... -.|-|+||.|+= |..++-..|.... .+..--..+++-. .+...- ..
T Consensus 388 lkN~~s~~~ka--------L~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvr-P~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 388 LKNSDSLTLKA--------LSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVR-PGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred ccchhhHHHHH--------HHhcC-CCceEEeeCCcccccHHHHHHHHhhcC-hhhccchHHHHHHhhcccccccCCCcc
Confidence 86544322222 22233 345588899953 2333333333211 1111111111110 000000 00
Q ss_pred eecCchhHHHHHHHHHHHHHH--------HHHhC-CCeEEEEecChhHHHHHHHHHHHHh---------hh---------
Q 000324 707 IQVKKPLQRFQLMNDLCYEKV--------VAVAG-KHQVLIFVHSRKETAKTARAIRDTA---------LE--------- 759 (1665)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~i--------~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~---------~~--------- 759 (1665)
-.......+.+.|..++-..+ .+..+ ..-.+|||+....=..+...|.... ..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 000011222333333322222 12223 2356788876544333443333310 00
Q ss_pred -cccccc----------ccc-----------c--Cchh--HH--HHHh----hhhccc---------------cchhhhh
Q 000324 760 -NDTLGR----------FLK-----------E--DSVS--RE--ILQS----HTDMVK---------------SNDLKDL 792 (1665)
Q Consensus 760 -~~~l~~----------~~~-----------~--~~~~--~~--~l~~----~~~~~~---------------~~~l~~l 792 (1665)
...+.. +.. . ...+ .- .|.. ..+... -..+...
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 000000 000 0 0000 00 0000 000000 1123333
Q ss_pred cCCcEEEecCCCCHHHHHHHHHHHhCCCC--C-eEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhc
Q 000324 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHV--Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (1665)
Q Consensus 793 l~~gv~~~Hagm~~~dR~~v~~~F~~g~i--~-VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~G 869 (1665)
..+.+..+||.|+..+|+.+.+.|.+..- . .|.+|-+.+.||||=+..-||..+..|||. .=.|.++
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa----------~d~QAma 687 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPA----------VDQQAMA 687 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCch----------hHHHHHH
Confidence 45678889999999999999999987543 3 566888999999999988888855555554 4789999
Q ss_pred ccCCCCCCCceEEEEEeCCC
Q 000324 870 RAGRPQYDSYGEGIIITGHS 889 (1665)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~ 889 (1665)
||=|+|.-+.-..|.+.+..
T Consensus 688 R~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HhccCCCcceEEEEEeecCC
Confidence 99999976666666666653
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-10 Score=105.42 Aligned_cols=72 Identities=32% Similarity=0.570 Sum_probs=65.4
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 794 ~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
..++..+||+|+..+|..+++.|.+|...|||+|+++++|+|+|.+..||. ++++. +..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~~------~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLPW------SPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCCC------CHHHHHHhhccccc
Confidence 467889999999999999999999999999999999999999999888887 66543 88899999999999
Q ss_pred CC
Q 000324 874 PQ 875 (1665)
Q Consensus 874 ~g 875 (1665)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 65
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-08 Score=132.20 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-HHHHHHhcC
Q 000324 1341 HFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQ 1416 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~---ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~-~~~~~~~~~ 1416 (1665)
.++|-|.+.... .+..+..+++.|+||+|||++|++|++... ... ++||++||++|+.|++ +++. .+++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~--~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQR--QIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCC--cEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 589999984444 445667799999999999999999988643 123 8999999999999995 5555 6666
Q ss_pred CCCcEEEEEeCC
Q 000324 1417 GLGMRVVELTGE 1428 (1665)
Q Consensus 1417 ~~~i~v~~l~G~ 1428 (1665)
..++++..+.|+
T Consensus 318 ~~~~~~~~~kg~ 329 (820)
T PRK07246 318 VFHIDCHSLKGP 329 (820)
T ss_pred hcCCcEEEEECC
Confidence 667777665553
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-07 Score=109.89 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
+..|-|+|.+-+.-+++.+..+++.-.-|-|||..| ++|...... ..-+++|+|- +|-..+++.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra-----------EwplliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA-----------EWPLLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh-----------cCcEEEEecH-HHhHHHHHHHHH
Confidence 346779999999999999888999999999999988 455554433 1248889995 344456666666
Q ss_pred hhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~ 652 (1665)
++.... .+..+.+....-...-....|.|.+.+.+..+-.... -...++||+||.|.|-+.+......++.-
T Consensus 263 ~lps~~-pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~dl--- 334 (689)
T KOG1000|consen 263 FLPSIH-PIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATDL--- 334 (689)
T ss_pred hccccc-ceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhhH---
Confidence 665332 2444444333222112234588888887654433322 22368999999999987543333333321
Q ss_pred HHhhccCCeeEEEEcccCC
Q 000324 653 QIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 653 ~~~~~~~~~riV~lSATl~ 671 (1665)
...-.++|+||.|..
T Consensus 335 ----lk~akhvILLSGTPa 349 (689)
T KOG1000|consen 335 ----LKVAKHVILLSGTPA 349 (689)
T ss_pred ----HHHhhheEEecCCcc
Confidence 234567899999953
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=129.69 Aligned_cols=273 Identities=16% Similarity=0.211 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
...+.+.+.++-+ +..++|++.||+|||.-.---||....... +..++++--|.|--|-.++++....-+...|-.|
T Consensus 175 ~~~r~~Il~~i~~-~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 175 YKMRDTILDAIEE-NQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred HHHHHHHHHHHHh-CceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 4455555655544 677999999999999987777777766544 3348999999999999999888766665556555
Q ss_pred EEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccc--cCCCCchhHHHHHHHHHHHHhhcCC
Q 000324 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL--IGGQGGPVLEVIVSRMRYIASQVEN 1500 (1665)
Q Consensus 1423 ~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~--l~~~~g~~~e~~~srl~~i~~~~~~ 1500 (1665)
+.-.+-.+ +.-....+.+||.|.+...+. ....+.++..+|+||+|. +..+. ++--++.+... .+
T Consensus 252 GYqvrl~~---~~s~~t~L~fcTtGvLLr~L~---~~~~l~~vthiivDEVHER~i~~Df------lLi~lk~lL~~-~p 318 (924)
T KOG0920|consen 252 GYQVRLES---KRSRETRLLFCTTGVLLRRLQ---SDPTLSGVTHIIVDEVHERSINTDF------LLILLKDLLPR-NP 318 (924)
T ss_pred eEEEeeec---ccCCceeEEEecHHHHHHHhc---cCcccccCceeeeeeEEEccCCccc------HHHHHHHHhhh-CC
Confidence 44333222 112346899999998776554 366789999999999994 33344 44444444433 57
Q ss_pred CCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEe-------ecccchhhHH----------------HH
Q 000324 1501 KIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-------GVDITNFEAR----------------MQ 1557 (1665)
Q Consensus 1501 ~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~-------~~~~~~~~~~----------------~~ 1557 (1665)
+.++|+||||+ |++.+..++|..+ ++......- |+..++. .+........ ..
T Consensus 319 ~LkvILMSAT~-dae~fs~YF~~~p--vi~i~grtf--pV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (924)
T KOG0920|consen 319 DLKVILMSATL-DAELFSDYFGGCP--VITIPGRTF--PVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEP 393 (924)
T ss_pred CceEEEeeeec-chHHHHHHhCCCc--eEeecCCCc--chHHHHHHHHHHHhcccccccccccccccCccccccchhccc
Confidence 99999999998 5888999998432 222221111 1111110 0000000000 00
Q ss_pred hcChhHHHHHHHHhc---CCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcc
Q 000324 1558 AMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l~---~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (1665)
.+.......+..++. ..+.+|||.|.-.....+...|...+...+ ..++
T Consensus 394 ~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~----------------------------~~~~ 445 (924)
T KOG0920|consen 394 EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD----------------------------SLKF 445 (924)
T ss_pred cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc----------------------------ccce
Confidence 122233334444432 345699999999999999988854332211 1223
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1635 gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
-|-.+|+.|+..+++.|....-.|.-+|++
T Consensus 446 ~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 446 AILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred EEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 478899999999999999988888877765
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=119.75 Aligned_cols=303 Identities=14% Similarity=0.159 Sum_probs=161.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
+...+|.||.|||||.+..-.+-..+. ..+.++++|+-+++|+.+...+|+...- .|.....-.++..+
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~----------~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK----------NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc----------CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 455789999999999865443322221 1356899999999999999999976421 12222211122222
Q ss_pred cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc-CCchHH---HHHHHHHHHHHhhccCCeeEEEE
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL---ESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d-~rg~~l---e~iv~r~~~~~~~~~~~~riV~l 666 (1665)
.. ...+-++++.+ +|-|... ..+.++++|||||+-.+.. -+.+.+ +.+...+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12445555555 5555443 4577799999999975533 122222 2222222222 2345688999
Q ss_pred cccCCChHHHHHHHh-ccccCceEEecCCCccccceEEEE---------------eeecCc--------------hhHHH
Q 000324 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYI---------------GIQVKK--------------PLQRF 716 (1665)
Q Consensus 667 SATl~n~~dv~~~l~-~~~~~~~~~f~~~~rpv~l~~~~~---------------~~~~~~--------------~~~~~ 716 (1665)
-||+.+ ..-+|+. ..|...+.++.++|........-. ..+... .....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999964 2333332 223344444444332211111000 000000 00000
Q ss_pred HHHHHHHHHHHHHH-hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCC
Q 000324 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 717 ~~~~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
..-....+..+... ..++.+-||++|...+..+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 00001123333333 347788899988888777776655431 2
Q ss_pred cEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccccccccCCCceE--EEEecccccCCCCCCcccCCHHHHHhhhcccCC
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (1665)
Q Consensus 796 gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~--vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (1665)
.|.++++.-... .++. =+..+|++=|+++..|+++-... -+.-+-. ....| .+..++.||+||.-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk--~~~~g----pd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVK--PMSYG----PDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEec--CCCCC----CcHHHHHHHHHHHHh
Confidence 244555544433 2222 35689999999999999986431 1222111 11111 256789999999977
Q ss_pred CCCCCceEEEEEeCCC
Q 000324 874 PQYDSYGEGIIITGHS 889 (1665)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (1665)
.. ..+.++.++..
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 64 45666666553
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=127.75 Aligned_cols=262 Identities=14% Similarity=0.251 Sum_probs=158.5
Q ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1339 FKHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~--dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
-+.++|+|..++..++.++ .+-+|+.|.|+|||++..-|+.. -++ ++|+++.+---+.|+...++ .+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK--~clvLcts~VSVeQWkqQfk-~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKK--SCLVLCTSAVSVEQWKQQFK-QWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecc--cEEEEecCccCHHHHHHHHH-hhcc
Confidence 4678999999999998533 35799999999999987665531 223 89999999999999988888 7777
Q ss_pred CCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHH-Hhhhccc-----cCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS-RRWKQRK-----YVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~-r~~~~~~-----~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
...-.++.+|++.... .-.++.|+|+|-.++..-- |.|...+ .-+..+++|+||+|.+... .++.+++-
T Consensus 371 i~d~~i~rFTsd~Ke~--~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~---MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKER--FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK---MFRRVLSI 445 (776)
T ss_pred cCccceEEeecccccc--CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH---HHHHHHHH
Confidence 6667788999876543 2346789999987664311 1111111 1246799999999998532 23333332
Q ss_pred HHHHHhhcCCCCeEEEEcccCCChHH--------------HHHHhcccCCcEE-ecC--CCCCccceEEEEeecccchhh
Q 000324 1491 MRYIASQVENKIRIVALSTSLANAKD--------------LGEWIGATSHGLF-NFP--PGVRPVPLEIHIQGVDITNFE 1553 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~n~~d--------------l~~wl~~~~~~~~-~f~--~~~rpv~l~i~i~~~~~~~~~ 1553 (1665)
+. ++ --+||+|||-..+| =|.|+...+.+.+ ++. .-+-|..-+.+-.... ....
T Consensus 446 v~---aH-----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~-~~t~ 516 (776)
T KOG1123|consen 446 VQ---AH-----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR-ENTR 516 (776)
T ss_pred HH---HH-----hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh-hhhh
Confidence 22 22 24899999965432 2456655443322 111 0001110000000000 0011
Q ss_pred H--HHHhcChhHHHH----HHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHH
Q 000324 1554 A--RMQAMTKPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEM 1627 (1665)
Q Consensus 1554 ~--~~~~~~k~~~~~----i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~ 1627 (1665)
. .+..|+...+.+ |.-|-..+.++|||..+.-.....|.
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi----------------------------------- 561 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI----------------------------------- 561 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH-----------------------------------
Confidence 1 112233333322 22333566778888877665555553
Q ss_pred HHHHhcccEEEEcCCCCHHHHHHHHHHHhcC-CceEE
Q 000324 1628 LKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKIC 1663 (1665)
Q Consensus 1628 L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G-~i~VL 1663 (1665)
+.|-.+++|..++.+|..|++.|+-+ .++.+
T Consensus 562 -----kl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 562 -----KLGKPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred -----HcCCceEECCCchhHHHHHHHhcccCCccceE
Confidence 33456899999999999999999864 44433
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-09 Score=119.68 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCChhHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHcCCCC
Q 000324 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (1665)
Q Consensus 1008 i~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~K~~~Llqa~is~~~~ 1087 (1665)
|.+-||.+|...+....+..+||.+||.|.||..+. | ..|..-.--|||.||.|.+-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~----------------p-------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN----------------P-------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC----------------C-------CCCchhHHHHHHHHHhHhhc
Confidence 667789999998888899999999999999986551 1 12333455699999999877
Q ss_pred CCCcchhhHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCC-CCcccccCCCCHHHHHHHHhCCC-Cc
Q 000324 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-AW 1165 (1665)
Q Consensus 1088 ~~~~l~~D~~~i~~~a~rl~~a~~ei~~~~g~~~~a~~~l~L~k~i~~~~W~~-~~pL~Q~~~i~~~~~~~l~~~~~-~~ 1165 (1665)
..|. ...|..++.-|+.|+.+|+...+.+..+...+++.|+|+|++.-+ ..|+.|+|+...+-++++--+.| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 6555 567889999999999999999999999999999999999999886 68999999999998888776666 67
Q ss_pred hhhccCChHHHhhhhcCc--hhhHHHHHHHhcCCcceEE
Q 000324 1166 ERYYDLSPQELGELIRFP--KMGRTLHKFVHQFPKLILA 1202 (1665)
Q Consensus 1166 ~~l~~l~~~el~~ll~~~--~~~~~i~~~~~~~P~l~l~ 1202 (1665)
..+..|.+++.++.+++- ...+.+.+.++.+|++.+-
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~ 398 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLL 398 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEE
Confidence 788889999999998753 3457889999999998873
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.7e-08 Score=127.26 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
.++|+|.+.+..++ ..+.+.|++-..|.|||+.++.. +..+... ...+ .+|||||. .++.++.+.+. +|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~~g--p~LIVvP~-SlL~nW~~Ei~-kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGITG--PHMVVAPK-STLGNWMNEIR-RFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCCCC--CEEEEeCh-HHHHHHHHHHH-HHCC
Confidence 68899999998765 34556899999999999987444 3334331 2233 68999996 77788999888 5553
Q ss_pred CCCcEEEEEeCCCccchh------ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1417 GLGMRVVELTGETAMDLK------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1417 ~~~i~v~~l~G~~~~~~~------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
..++..++|....... .....+|+|+|.+.+........ --+.++||+||||++-......
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~----k~~W~~VIvDEAHrIKN~~Skl------- 310 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK----RFSWRYIIIDEAHRIKNENSLL------- 310 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc----cCCCCEEEEcCccccCCHHHHH-------
Confidence 4678888886543211 12345899999988754322211 1256899999999996543211
Q ss_pred HHHHHhhcCCCCeEEEEcccCC
Q 000324 1491 MRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~ 1512 (1665)
......+.... .++||+|+-
T Consensus 311 -skalr~L~a~~-RLLLTGTPl 330 (1033)
T PLN03142 311 -SKTMRLFSTNY-RLLITGTPL 330 (1033)
T ss_pred -HHHHHHhhcCc-EEEEecCCC
Confidence 11112223333 478888874
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=113.69 Aligned_cols=265 Identities=17% Similarity=0.194 Sum_probs=169.7
Q ss_pred HHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000324 1345 IQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (1665)
Q Consensus 1345 iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~ 1423 (1665)
+-.+.+.++-. +.-++|.+.||||||.- +|=. |... ..+++.++-+--|.|--|..+..+..+.++..+|..|+
T Consensus 269 ykdell~av~e-~QVLiI~GeTGSGKTTQ--iPQy--L~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 269 YKDELLKAVKE-HQVLIIVGETGSGKTTQ--IPQY--LYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred hHHHHHHHHHh-CcEEEEEcCCCCCcccc--ccHH--HHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 33444444433 55578999999999984 3322 2221 12333358889999999999998888777655554443
Q ss_pred EEe--CCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCC
Q 000324 1424 ELT--GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK 1501 (1665)
Q Consensus 1424 ~l~--G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~ 1501 (1665)
.-. -+.+. +..-|=+.|-|.|. |.+.....+....++||||||-=. -.-..++.-++.|... .+.
T Consensus 344 YsIRFEdcTS-----ekTvlKYMTDGmLl---REfL~epdLasYSViiiDEAHERT----L~TDILfgLvKDIar~-Rpd 410 (902)
T KOG0923|consen 344 YSIRFEDCTS-----EKTVLKYMTDGMLL---REFLSEPDLASYSVIIVDEAHERT----LHTDILFGLVKDIARF-RPD 410 (902)
T ss_pred eEEEeccccC-----cceeeeeecchhHH---HHHhccccccceeEEEeehhhhhh----hhhhHHHHHHHHHHhh-CCc
Confidence 211 11111 23456788988765 444456678899999999999321 1122255556666544 578
Q ss_pred CeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHH-H-hcCCCCEEE
Q 000324 1502 IRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ-H-AKNEKPALV 1579 (1665)
Q Consensus 1502 ~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~-~-l~~~~~~IV 1579 (1665)
.+++..|||+ +++.+..+++.. .+|+++. |..|+.++....+..++..- ++..+++ | -.+.+-+||
T Consensus 411 LKllIsSAT~-DAekFS~fFDda--pIF~iPG--RRyPVdi~Yt~~PEAdYldA-------ai~tVlqIH~tqp~GDILV 478 (902)
T KOG0923|consen 411 LKLLISSATM-DAEKFSAFFDDA--PIFRIPG--RRYPVDIFYTKAPEADYLDA-------AIVTVLQIHLTQPLGDILV 478 (902)
T ss_pred ceEEeecccc-CHHHHHHhccCC--cEEeccC--cccceeeecccCCchhHHHH-------HHhhheeeEeccCCccEEE
Confidence 9999999998 888999999765 4777665 55566676655544443321 1122221 1 134566999
Q ss_pred EeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCC
Q 000324 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK 1659 (1665)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~ 1659 (1665)
|..-....+.+...|...+..-+... ...-|..+|++||...+..|.+---.|.
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGski--------------------------~eliv~PiYaNLPselQakIFePtP~ga 532 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSKI--------------------------RELIVLPIYANLPSELQAKIFEPTPPGA 532 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhcccc--------------------------ceEEEeeccccCChHHHHhhcCCCCCCc
Confidence 99999988877777754332211110 1123688999999999999998888888
Q ss_pred ceEEEC
Q 000324 1660 IKICYR 1665 (1665)
Q Consensus 1660 i~VLVC 1665 (1665)
-+|+++
T Consensus 533 RKVVLA 538 (902)
T KOG0923|consen 533 RKVVLA 538 (902)
T ss_pred eeEEEe
Confidence 888763
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=122.23 Aligned_cols=323 Identities=21% Similarity=0.259 Sum_probs=189.1
Q ss_pred CCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+|+.+|-+-++.++. .+.|+|+.-.-|-|||+.- ++.|..+.....-.| -.|+|+|.-.+. .+.+.|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~~g-------pflvvvplst~~-~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQIHG-------PFLVVVPLSTIT-AWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhccC-------CeEEEeehhhhH-HHHHHH
Confidence 6899999998887654 3678999999999999754 233333333221112 357788986654 455566
Q ss_pred HHhhccCCcEEEEEECCCcccHhh------------hccccEEEeChhhHHHHHhhcCCCccccc--eeEEEEecccccc
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDRTYTQL--VKLLIIDEIHLLH 636 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~~------------~~~~~IiV~TPekld~l~r~~~~~~~l~~--v~liIiDEaH~l~ 636 (1665)
..+. .+++..++|+.....-. .-..++++||.|. ++.-. ..++. ..+++|||||.|-
T Consensus 440 ~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~---~LkDk---~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 440 ETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEI---VLKDK---AELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHH---HhccH---hhhccCCcceeeecHHhhcC
Confidence 6544 57889999976532210 0147899999995 32221 22332 4789999999997
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC-CC-hHHHHHHHhccccCceEE--------ec-----------CCC
Q 000324 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATL-PN-YEDVALFLRVNLEKGLFY--------FD-----------NSY 695 (1665)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl-~n-~~dv~~~l~~~~~~~~~~--------f~-----------~~~ 695 (1665)
+.-...++.+ .. ...+-| ++++.|. .| .+++...+..-. .+-|. |+ ...
T Consensus 511 N~~~~l~~~l-~~-------f~~~~r-llitgTPlQNsikEL~sLl~Fl~-P~kf~~~~~f~~~~~~~~e~~~~~L~~~L 580 (1373)
T KOG0384|consen 511 NDESKLYESL-NQ-------FKMNHR-LLITGTPLQNSLKELWSLLHFLM-PGKFDSWDEFLEEFDEETEEQVRKLQQIL 580 (1373)
T ss_pred chHHHHHHHH-HH-------hcccce-eeecCCCccccHHHHHHHhcccC-CCCCCcHHHHHHhhcchhHHHHHHHHHHh
Confidence 5433333331 11 122334 5666663 33 556665553211 00000 00 000
Q ss_pred cc--------------ccceEEEEeeecCch------------------------hHHHHHHHH----------------
Q 000324 696 RP--------------VPLSQQYIGIQVKKP------------------------LQRFQLMND---------------- 721 (1665)
Q Consensus 696 rp--------------v~l~~~~~~~~~~~~------------------------~~~~~~~~~---------------- 721 (1665)
+| -|-...++.+....- ...++.|.+
T Consensus 581 ~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee 660 (1373)
T KOG0384|consen 581 KPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEE 660 (1373)
T ss_pred hHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHH
Confidence 11 011112222111100 000111110
Q ss_pred ------------HH-------------HHHHHHH--hCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhH
Q 000324 722 ------------LC-------------YEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSR 774 (1665)
Q Consensus 722 ------------~~-------------~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~ 774 (1665)
.. .++++.. .++++||||..-.+--.-++.+|..++
T Consensus 661 ~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~----------------- 723 (1373)
T KOG0384|consen 661 KILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG----------------- 723 (1373)
T ss_pred HHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC-----------------
Confidence 01 1222221 136788888766666556666665543
Q ss_pred HHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCC---CCCeEEeccccccccCCCceEEEEecccccCC
Q 000324 775 EILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851 (1665)
Q Consensus 775 ~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~ 851 (1665)
+.+--+-|++..+-|+..++.|... ..-.|+||.+.+-||||-+.+-||-++.-|||
T Consensus 724 --------------------ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNP 783 (1373)
T KOG0384|consen 724 --------------------YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNP 783 (1373)
T ss_pred --------------------CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCc
Confidence 2233347999999999999999753 45689999999999999987777765555655
Q ss_pred CCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcH
Q 000324 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 852 ~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
. .=+|-.-||-|-|.-+.-.+|.+++....
T Consensus 784 Q----------NDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 784 Q----------NDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred c----------hHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 5 46888889999887777888999888653
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=115.47 Aligned_cols=304 Identities=8% Similarity=-0.041 Sum_probs=187.7
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1330 ~~~~~l~~~--f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
+....+|.+ -..+..+|..++..+-.|. |+++.-.|.+||.+|+.++....+... +.. ..+|+.|+++++....
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~-~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s--~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGR-ADGGNEARQAGKGTCPTSGSRKFQTLC-HAT--NSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcc-cccccchhhcCCccCcccchhhhhhcC-ccc--ceecchhHHHHhhccC
Confidence 455566665 4578899999999987755 599999999999999999988777663 344 7899999999998755
Q ss_pred HHHHHHhcCCC---CcEEEEEeCCCccchh--ccCCCcEEEEChhhHHH--HHHhhhccccCCCccEEEeecccccCCCC
Q 000324 1408 RDWEIKFGQGL---GMRVVELTGETAMDLK--LLEKGQIIISTPEKWDA--LSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1408 ~~~~~~~~~~~---~i~v~~l~G~~~~~~~--~l~~~~IIV~TPe~l~~--l~r~~~~~~~l~~v~llViDEaH~l~~~~ 1480 (1665)
+-+.-.+.... +--|....|++....+ ...+.+++.+.|..... +-.....+..+-...++++||+|.+....
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 43321111110 1112233343333322 22456899999988754 22332334456678899999999998877
Q ss_pred chhHHHHHHHHHHHHhhc--CCCCeEEEEcccCCChH-HHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHH
Q 000324 1481 GPVLEVIVSRMRYIASQV--ENKIRIVALSTSLANAK-DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (1665)
Q Consensus 1481 g~~~e~~~srl~~i~~~~--~~~~riI~lSATl~n~~-dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~ 1557 (1665)
|......+.++..+..-+ ..+.+++-.|||+.+.. ...+..|...-.+.....+.....+-+.......+.....-.
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 777777777766665433 35799999999998754 455555555444444332211111111111111111111111
Q ss_pred hcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEE
Q 000324 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (1665)
Q Consensus 1558 ~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~ 1637 (1665)
.........+.+.+..+-++|.||++|+-|+.+-......+.... .. +--.|.
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~-----------------------~~----LV~~i~ 561 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETA-----------------------PH----LVEAIT 561 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh-----------------------HH----HHHHHH
Confidence 111222223344445678899999999999887654432111110 01 122356
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1638 YLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1638 ~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.|.||.+.+||+.++...-.|++.-+|
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giI 588 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGII 588 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEE
Confidence 788999999999999998888877665
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=111.24 Aligned_cols=265 Identities=18% Similarity=0.208 Sum_probs=163.9
Q ss_pred HHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh--cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1345 IQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1345 iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~--~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
.+.+.+..+-. ++-|+|++.||||||.-. | +.|... ..++ .+-+--|.|.-|..++++....++-.+|..|
T Consensus 360 ~R~~ll~~ir~-n~vvvivgETGSGKTTQl--~--QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 360 CRDQLLSVIRE-NQVVVIVGETGSGKTTQL--A--QYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHHHhh-CcEEEEEecCCCCchhhh--H--HHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 44455555543 555889999999999853 2 222222 2344 6778899999999999998877765555554
Q ss_pred EEEe--CCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCC
Q 000324 1423 VELT--GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (1665)
Q Consensus 1423 ~~l~--G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~ 1500 (1665)
+.-. -+.+. +..-|=..|-+.|..- .-....+.+...||+||||.=.-. ...++--++...+. ..
T Consensus 433 GYsIRFEdvT~-----~~T~IkymTDGiLLrE---sL~d~~L~kYSviImDEAHERslN----tDilfGllk~~lar-Rr 499 (1042)
T KOG0924|consen 433 GYSIRFEDVTS-----EDTKIKYMTDGILLRE---SLKDRDLDKYSVIIMDEAHERSLN----TDILFGLLKKVLAR-RR 499 (1042)
T ss_pred ceEEEeeecCC-----CceeEEEeccchHHHH---HhhhhhhhheeEEEechhhhcccc----hHHHHHHHHHHHHh-hc
Confidence 3321 11111 2345778888876532 223456788999999999943211 11233333333332 45
Q ss_pred CCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhc-CCCCEEE
Q 000324 1501 KIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAK-NEKPALV 1579 (1665)
Q Consensus 1501 ~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~-~~~~~IV 1579 (1665)
+.++|..|||+ |++.++.++|.- ..|+++. |..|+++.....+..++.. +..+. .+.-|+. +.+-+||
T Consensus 500 dlKliVtSATm-~a~kf~nfFgn~--p~f~IpG--RTyPV~~~~~k~p~eDYVe---aavkq---~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 500 DLKLIVTSATM-DAQKFSNFFGNC--PQFTIPG--RTYPVEIMYTKTPVEDYVE---AAVKQ---AVQIHLSGPPGDILI 568 (1042)
T ss_pred cceEEEeeccc-cHHHHHHHhCCC--ceeeecC--CccceEEEeccCchHHHHH---HHHhh---heEeeccCCCCCEEE
Confidence 89999999998 899999999932 2455444 6667776665544443332 22221 1222222 3356999
Q ss_pred EeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCC
Q 000324 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK 1659 (1665)
Q Consensus 1580 Fv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~ 1659 (1665)
|++.+...+-++..+...+..-.. .......|-.+++.|+..-+..+.+.--.|.
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~-------------------------~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~v 623 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDS-------------------------APTTDLAVLPIYSQLPADLQAKIFQKAEGGV 623 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhc-------------------------CCCCceEEEeehhhCchhhhhhhcccCCCCc
Confidence 999988887777666432211000 0112334788999999999999988888888
Q ss_pred ceEEEC
Q 000324 1660 IKICYR 1665 (1665)
Q Consensus 1660 i~VLVC 1665 (1665)
-+|+|+
T Consensus 624 RK~IvA 629 (1042)
T KOG0924|consen 624 RKCIVA 629 (1042)
T ss_pred eeEEEe
Confidence 888874
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=97.20 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
++--++-..+|+|||.-.+--++++.... +.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-
Confidence 34467889999999986655555544432 458999999999999998887542 33332 21111
Q ss_pred cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl 670 (1665)
.....+.-|-|+|...+-...-.. ....++++||+||+|.... .--.....+... . .....++|.+|||.
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~p---~~~~~yd~II~DEcH~~Dp----~sIA~rg~l~~~-~-~~g~~~~i~mTATP 136 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLNP---CRLKNYDVIIMDECHFTDP----TSIAARGYLREL-A-ESGEAKVIFMTATP 136 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS---SCTTS-SEEEECTTT--SH----HHHHHHHHHHHH-H-HTTS-EEEEEESS-
T ss_pred -ccccCCCcccccccHHHHHHhcCc---ccccCccEEEEeccccCCH----HHHhhheeHHHh-h-hccCeeEEEEeCCC
Confidence 122345667788888653322222 3457899999999997531 111111222221 1 23357899999998
Q ss_pred CC
Q 000324 671 PN 672 (1665)
Q Consensus 671 ~n 672 (1665)
|-
T Consensus 137 PG 138 (148)
T PF07652_consen 137 PG 138 (148)
T ss_dssp TT
T ss_pred CC
Confidence 74
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=120.67 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=53.1
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc-CC--CCcEEEEEeC
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG-QG--LGMRVVELTG 1427 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~-~~--~~i~v~~l~G 1427 (1665)
..+..+++.||||+|||++|++|++...... .+. ++||++||++|+.|++++|. .+. +. ..++++.+.|
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~--rvlIstpT~~Lq~Ql~~~l~-~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQ--KIAIAVPTLALMGQLWSELE-RLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCc--eEEEECCcHHHHHHHHHHHH-HHHHhhcCCCeeEEEEEC
Confidence 3466699999999999999999999877642 233 99999999999999999888 555 32 2345555443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-06 Score=110.87 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=80.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEEC-CCc-cc
Q 000324 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG-DQT-LT 591 (1665)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltG-d~~-~~ 591 (1665)
-|.-+.||-|||+++.+|+.-....+ ..+-+|+..--||.-=++.....+..+|++|++... +.. ..
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~G-----------kgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~ 253 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALTG-----------NGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEA 253 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHcC-----------CCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHH
Confidence 57889999999999999987665543 235667777788887777888888889999998865 322 23
Q ss_pred HhhhccccEEEeChhhH--HHHHhhcC---CCccccceeEEEEeccccc
Q 000324 592 RQQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEaH~l 635 (1665)
++..-.++|.++|..-| |.|..+.. +......+.+.||||||.+
T Consensus 254 rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 254 RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 34456899999999874 65544432 2234455789999999965
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.7e-06 Score=103.54 Aligned_cols=362 Identities=18% Similarity=0.192 Sum_probs=188.7
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHH--HHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVA--VLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a--~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
+..|.++|+..+..+++ .+.--|+.-.-|-|||... .|+.|++-. +. ...+|||||. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k~--------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--KL--------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--cc--------cCceEEEccH-HHHHHHH
Confidence 35788999999987653 3344688889999999643 333333211 11 1368999996 5678899
Q ss_pred HHHHHhhccCCcEEEEEECCCcc----------------cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEec
Q 000324 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 568 ~~~~~~~~~~gi~V~~ltGd~~~----------------~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDE 631 (1665)
.+|+.++.+ .+|.+++|..+- .+......+|+++|.+.+ |..++...-....++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~----r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF----RIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh----cccCcccccccccEEEecC
Confidence 999998764 578888775541 112233567999999864 2222222233468999999
Q ss_pred ccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC-CC-hHHHHHHHhc-cccC--ceEEecCCCccccceE-EEE
Q 000324 632 IHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL-PN-YEDVALFLRV-NLEK--GLFYFDNSYRPVPLSQ-QYI 705 (1665)
Q Consensus 632 aH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl-~n-~~dv~~~l~~-~~~~--~~~~f~~~~rpv~l~~-~~~ 705 (1665)
.|.+-+.-.... ++ . .+.+..-| |+||.|. .| ..++...+.. .|.. ..-+|...|. .|+.. .+.
T Consensus 346 GH~IrNpns~is---la--c---kki~T~~R-iILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~-~pI~~Ggya 415 (923)
T KOG0387|consen 346 GHRIRNPNSKIS---LA--C---KKIRTVHR-IILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE-HPINRGGYA 415 (923)
T ss_pred cccccCCccHHH---HH--H---Hhccccce-EEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh-hheeccccC
Confidence 999965322211 11 1 12233344 5667663 33 3333332221 1110 0111211111 11110 000
Q ss_pred eeecC---chhHHHHHHHHHHHHHHH--------H-H-hCCCeEEEEecChhHHHHHHHHHHHH-hh----h--------
Q 000324 706 GIQVK---KPLQRFQLMNDLCYEKVV--------A-V-AGKHQVLIFVHSRKETAKTARAIRDT-AL----E-------- 759 (1665)
Q Consensus 706 ~~~~~---~~~~~~~~~~~~~~~~i~--------~-~-~~~~~vLVFv~sr~~~~~~a~~L~~~-~~----~-------- 759 (1665)
..+.. ...+....+...+-..++ . . .++.-.+|||.=...-.++++.+... .. +
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G 495 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG 495 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec
Confidence 00000 000111111111111111 1 1 12456899998665555555544321 00 0
Q ss_pred -------cccccccccc---------------CchhHHHHHhhhh-------cc----c----cchhhhhcC----CcEE
Q 000324 760 -------NDTLGRFLKE---------------DSVSREILQSHTD-------MV----K----SNDLKDLLP----YGFA 798 (1665)
Q Consensus 760 -------~~~l~~~~~~---------------~~~~~~~l~~~~~-------~~----~----~~~l~~ll~----~gv~ 798 (1665)
++....+-+. .+...+++..... .+ + -..|..++. +.+.
T Consensus 496 i~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysyl 575 (923)
T KOG0387|consen 496 IDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYL 575 (923)
T ss_pred hHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEE
Confidence 0000000000 0111111111100 00 0 112333333 3344
Q ss_pred EecCCCCHHHHHHHHHHHhCCCC-C-eEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCC
Q 000324 799 IHHAGMTRGDRQLVEDLFGDGHV-Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (1665)
Q Consensus 799 ~~Hagm~~~dR~~v~~~F~~g~i-~-VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (1665)
-.-|..+...|....+.|.++.. . .|++|.+.+-|+||-...-||-++.-|||. .=.|-.-||=|-|.
T Consensus 576 RmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPS----------tD~QAreRawRiGQ 645 (923)
T KOG0387|consen 576 RMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPS----------TDNQARERAWRIGQ 645 (923)
T ss_pred EecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCc----------cchHHHHHHHhhcC
Confidence 45788899999999999997653 3 578999999999999877777644444443 45677788888776
Q ss_pred CCceEEEEEeCCCcH
Q 000324 877 DSYGEGIIITGHSEL 891 (1665)
Q Consensus 877 d~~G~~iil~~~~~~ 891 (1665)
.+.-.+|.+.+....
T Consensus 646 kkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 646 KKDVVVYRLMTAGTI 660 (923)
T ss_pred ccceEEEEEecCCcH
Confidence 555666777776543
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-07 Score=109.83 Aligned_cols=223 Identities=21% Similarity=0.240 Sum_probs=137.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHH-HHh--hcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRN-HQK--ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~-l~~--~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~ 1432 (1665)
.++-||||+.||||||.-----+... +.. ....+ .+=|--|.|--|-.+.++....++. ++.+|....- .+
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIR---fd 343 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIR---FD 343 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-CccceeEEEE---ec
Confidence 36669999999999997421111111 001 01122 5667889998888888877766665 3444433221 11
Q ss_pred hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCC------CCeEEE
Q 000324 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN------KIRIVA 1506 (1665)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~------~~riI~ 1506 (1665)
...-....|-+.|-|.|..-+ .....+.....||+||||.=. .....+--+++|+-.+...+.. +.++|.
T Consensus 344 ~ti~e~T~IkFMTDGVLLrEi---~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 344 GTIGEDTSIKFMTDGVLLREI---ENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred cccCCCceeEEecchHHHHHH---HHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 122245689999999876433 345567889999999999432 1223344477887777665554 899999
Q ss_pred EcccCCChHHHHHHhcccCCcEEecCC-----CCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEe
Q 000324 1507 LSTSLANAKDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFV 1581 (1665)
Q Consensus 1507 lSATl~n~~dl~~wl~~~~~~~~~f~~-----~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv 1581 (1665)
|||||- ..|+.+ ...+|...| ..|..|+.+|++.-...+|..... . ....|.+. .+.+.+||||
T Consensus 420 MSATLR-VsDFte-----nk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf--r--Ktc~IH~k-LP~G~ILVFv 488 (1172)
T KOG0926|consen 420 MSATLR-VSDFTE-----NKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF--R--KTCKIHKK-LPPGGILVFV 488 (1172)
T ss_pred EeeeEE-eccccc-----CceecCCCCceeeeecccCceEEEeccCCCchHHHHHH--H--HHHHHhhc-CCCCcEEEEE
Confidence 999983 223321 122333333 337778888887655444433211 1 11123333 4667799999
Q ss_pred CchHHHHHHHHHHHHhcc
Q 000324 1582 PSRKYVRLTAVDLMTYSS 1599 (1665)
Q Consensus 1582 ~sr~~a~~la~~L~~~~~ 1599 (1665)
.....+..++..|.+...
T Consensus 489 TGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred eChHHHHHHHHHHHhhCc
Confidence 999999999999987643
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-07 Score=115.14 Aligned_cols=198 Identities=16% Similarity=0.109 Sum_probs=122.1
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh------ccC
Q 000324 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK------LLE 1437 (1665)
Q Consensus 1364 ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~------~l~ 1437 (1665)
+.+|||||.+|+-.+-..+.. ++ ++|+++|...|..|+.+.+++.|+. ..|+.++++.+...+ ...
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhC
Confidence 346999999998888777765 33 8999999999999999999988862 468889998876632 222
Q ss_pred -CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC--CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1438 -KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1438 -~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~--~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
.+.|||+|- ..-...+.++++|||||-|--. +..++.|.. ..+.....+ ..+..+|+-|||++ .
T Consensus 239 G~~~IViGtR---------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha--RdvA~~Ra~-~~~~~lvLgSaTPS-l 305 (665)
T PRK14873 239 GQARVVVGTR---------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA--REVALLRAH-QHGCALLIGGHART-A 305 (665)
T ss_pred CCCcEEEEcc---------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccH--HHHHHHHHH-HcCCcEEEECCCCC-H
Confidence 358999992 2234468899999999999443 333444322 222222222 34788999999964 2
Q ss_pred HHHHHHhcccCCcEEecCCCC----CccceEEEEeecccchhh----HHHHhcChhHHHHHHHHhcCCCCEEEEeCchHH
Q 000324 1515 KDLGEWIGATSHGLFNFPPGV----RPVPLEIHIQGVDITNFE----ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY 1586 (1665)
Q Consensus 1515 ~dl~~wl~~~~~~~~~f~~~~----rpv~l~i~i~~~~~~~~~----~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~ 1586 (1665)
+. |.......+....... ...| .+++.+....... .....+.......+.+.+..+ ++|||+|.|--
T Consensus 306 es---~~~~~~g~~~~~~~~~~~~~~~~P-~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGy 380 (665)
T PRK14873 306 EA---QALVESGWAHDLVAPRPVVRARAP-RVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGY 380 (665)
T ss_pred HH---HHHHhcCcceeeccccccccCCCC-eEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCC
Confidence 22 2211111111111110 1111 2333322110000 000125667788888887877 99999998874
Q ss_pred H
Q 000324 1587 V 1587 (1665)
Q Consensus 1587 a 1587 (1665)
+
T Consensus 381 a 381 (665)
T PRK14873 381 V 381 (665)
T ss_pred C
Confidence 4
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=98.58 E-value=4e-06 Score=108.96 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=57.6
Q ss_pred hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcC
Q 000324 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (1665)
Q Consensus 1562 ~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~ 1641 (1665)
..+..+......+.++||||+|+++|+.++..|. ..+..+.++||
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~-----------------------------------~~gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLK-----------------------------------ELGIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-----------------------------------hhccceeeeeC
Confidence 3444555555677889999999999999997772 23456889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++++.+|..+++.|+.|.++||||
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~ 498 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVG 498 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEE
Confidence 999999999999999999999987
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=110.34 Aligned_cols=167 Identities=22% Similarity=0.235 Sum_probs=96.1
Q ss_pred HHHHHHHHHHc------------CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+|.+++..++. ....+|++-.+|+|||..++..+. .+....... ...++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~-----~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQR-----GEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTS-----S-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccc-----cccceeEeecc-chhhhh
Confidence 46666665432 335799999999999988865554 333321110 12259999999 888999
Q ss_pred HHHHHHhhccCCcEEEEEECCCc---ccHhhhccccEEEeChhhHHHHHhhc-CCCccccceeEEEEecccccccCCchH
Q 000324 567 VGNLSNRLQMYDVKVRELSGDQT---LTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 567 ~~~~~~~~~~~gi~V~~ltGd~~---~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l~~v~liIiDEaH~l~d~rg~~ 642 (1665)
..++.+.+.+...++..+.|+.. .........+++|+|.+.+....... .....--..++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 99999988655678888888761 11223457899999999754110111 100111237899999999996543333
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccCC-C-hHHHHHHHh
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDVALFLR 681 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl~-n-~~dv~~~l~ 681 (1665)
...+ .... ....++||||.- | +.|+...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3222 1222 556688999943 2 455555443
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=111.52 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHH--HcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSA--LSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~--l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
.|+.+|.+-+..+ ++.-+ +-|+|-.-|=|||+..+-.+.....+.+ .+......+-.++|||. .|+--+..+|.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 6788999988764 33322 6799999999999988655544444331 12222234447899996 78888999998
Q ss_pred HhhccCCcEEEEEECCCccc---HhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLT---RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~---~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~ 648 (1665)
+++.. ++|..++|.-... +.+.++++|||+.++.+ |+..+...-..+.+.|+||-|-+-+.+ +
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~----RnD~d~l~~~~wNYcVLDEGHVikN~k--------t 1117 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVV----RNDVDYLIKIDWNYCVLDEGHVIKNSK--------T 1117 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHH----HHHHHHHHhcccceEEecCcceecchH--------H
Confidence 87765 6788888865433 23456789999999864 111100001125789999999886533 1
Q ss_pred HHHHHHhhccCCeeEEEEccc
Q 000324 649 RTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 649 r~~~~~~~~~~~~riV~lSAT 669 (1665)
++...+.+...+.| +.||.|
T Consensus 1118 kl~kavkqL~a~hR-LILSGT 1137 (1549)
T KOG0392|consen 1118 KLTKAVKQLRANHR-LILSGT 1137 (1549)
T ss_pred HHHHHHHHHhhcce-EEeeCC
Confidence 22233334444555 556777
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-07 Score=91.80 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=77.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccC
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~ 1437 (1665)
+-.++-..+|+|||.-.+--+++.-.. .+. |+|+++|||.++..+.+.++ +..+..-+.-.. .....
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~--~~~~g 71 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARM--RTHFG 71 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS------S
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHh-------cCCcccCceeee--ccccC
Confidence 335788999999999766656654444 244 99999999999999998665 122222111111 11224
Q ss_pred CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
+.-|-|.|-..+...+-. ...+.+.+++|+||||...... -.+...+..... .....+|.+|||+|-.
T Consensus 72 ~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~s----IA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPTS----IAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHHH----HHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred CCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHHH----HhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 456788888876655443 3346899999999999864221 112223333322 2347899999998764
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=106.74 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=93.5
Q ss_pred HHHHHHHHHH------------cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1345 IQTQVFTVLY------------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1345 iQ~qa~~~ll------------~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
+|.+++..++ .....++++-.+|+|||+.+...+..........+.-.+|||+|. .+..|+..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 4666666553 233568999999999999986665533333111111159999999 888999999994
Q ss_pred HhcCCCCcEEEEEeCCCc---cchhccCCCcEEEEChhhHHHHHHhhh-ccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1413 KFGQGLGMRVVELTGETA---MDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1413 ~~~~~~~i~v~~l~G~~~---~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
+......++..+.|... .........+++|+|.+.+......+. ....-.+.++||+||+|.+.+.....+..+.
T Consensus 80 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 80 -WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp -HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred -ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 44322468888888761 112345567999999998871100000 0001134899999999999654432222221
Q ss_pred HHHHHHHhhcCCCCeEEEEcccCCC--hHHHHH
Q 000324 1489 SRMRYIASQVENKIRIVALSTSLAN--AKDLGE 1519 (1665)
Q Consensus 1489 srl~~i~~~~~~~~riI~lSATl~n--~~dl~~ 1519 (1665)
.+. ....+++|||+.. ..|+..
T Consensus 159 --------~l~-~~~~~lLSgTP~~n~~~dl~~ 182 (299)
T PF00176_consen 159 --------KLR-ARYRWLLSGTPIQNSLEDLYS 182 (299)
T ss_dssp --------CCC-ECEEEEE-SS-SSSGSHHHHH
T ss_pred --------ccc-cceEEeecccccccccccccc
Confidence 223 5667889999754 345444
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-06 Score=103.63 Aligned_cols=128 Identities=17% Similarity=0.097 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--..-.++.| -++.+.||+|||+++.+|++..... +. .+-+++|+.-||.|-++.+. .+-..+|+
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~-~ly~~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMG-PLYEALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHH-HHHHhcCC
Confidence 5667777666666653 3789999999999999999876655 33 68899999999999999877 44456899
Q ss_pred EEEEEeCCCccc-hhccCCCcEEEEChhhHHH-HHHh-h---hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|+.++++.+.+ .+..-.+||+.+|...+-. ++|. . ........+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999987765 3344578999999998621 2221 1 111233458899999999664
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=103.95 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
|. ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..+....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 54 49999995544 345567899999999999999999998776543211 0234899999999998887777
Q ss_pred HHHh
Q 000324 570 LSNR 573 (1665)
Q Consensus 570 ~~~~ 573 (1665)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6654
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=103.95 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
|. ++|.|.+.+.. .+..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..+....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 54 49999995544 345567899999999999999999998776543211 0234899999999998887777
Q ss_pred HHHh
Q 000324 570 LSNR 573 (1665)
Q Consensus 570 ~~~~ 573 (1665)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6654
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=102.51 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1342 FNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5999999655543 3456799999999999999999999877653221 123799999999999998887764
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=102.51 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCC-CCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1342 FNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
++|.|.+....++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5999999655543 3456799999999999999999999877653221 123799999999999998887764
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=100.01 Aligned_cols=379 Identities=20% Similarity=0.216 Sum_probs=202.0
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+|-++|.--+..+ ++.+=|.|+.-.-|-|||..+ ++.+..+.+... .+ .=+||||.-.| ..+.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~-------~g-pHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN-------PG-PHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC-------CC-CcEEEecchhH-HHHHHHHH
Confidence 4777887776653 455557899999999999754 333334433221 12 34778998776 44667787
Q ss_pred HhhccCCcEEEEEECCCcccHhh-------hccccEEEeChhhHHHHHhhcCCCccc--cceeEEEEecccccccCCchH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYT--QLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l--~~v~liIiDEaH~l~d~rg~~ 642 (1665)
+++. .++|..++|...-..+. ....+|+|||.... .....++.++ .++.++|+||.|.|-+.....
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la---~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLA---ASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecc---cCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 7765 57888888876433221 12689999998743 2222222333 346899999999997633222
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEccc-CCC-hHHHHHHHhccccCceEEecCCCccccceEEEEe----eec-----Cc
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSAT-LPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG----IQV-----KK 711 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSAT-l~n-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~----~~~-----~~ 711 (1665)
+..++ ..+.+.| ++|+.| |.| ..++-..|..-.. .+ |+.+......-..... -.+ ..
T Consensus 544 y~~LM--------~I~An~R-lLLTGTPLQNNL~ELiSLL~FvlP-~v--F~~~~~dl~~if~~k~~~d~d~e~~~l~qe 611 (941)
T KOG0389|consen 544 YKHLM--------SINANFR-LLLTGTPLQNNLKELISLLAFVLP-KV--FDSSMEDLDVIFKAKKTSDGDIENALLSQE 611 (941)
T ss_pred HHHhc--------cccccce-EEeeCCcccccHHHHHHHHHHHhh-Hh--hhccchHHHHHHhccCCccchhhHHHHHHH
Confidence 33322 2345556 556666 333 4444444432211 11 2221111000000000 000 00
Q ss_pred hhHHHHHHHH-H----HHHHHHHHhC-CCeEEEEecChhHHHHHHHHHHHHhh---hcc--c---cc-------------
Q 000324 712 PLQRFQLMND-L----CYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTAL---END--T---LG------------- 764 (1665)
Q Consensus 712 ~~~~~~~~~~-~----~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~---~~~--~---l~------------- 764 (1665)
...+...|.. . .-+.++...+ +.+.|.||.-.+.-..++..+.+... ... . ..
T Consensus 612 rIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnH 691 (941)
T KOG0389|consen 612 RISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANH 691 (941)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcC
Confidence 1112222211 1 1223344444 55788888755544444444433220 000 0 00
Q ss_pred cccc------------------c---CchhHHHHHhh------------hh-----------------ccccchhhhhc-
Q 000324 765 RFLK------------------E---DSVSREILQSH------------TD-----------------MVKSNDLKDLL- 793 (1665)
Q Consensus 765 ~~~~------------------~---~~~~~~~l~~~------------~~-----------------~~~~~~l~~ll- 793 (1665)
.++. . .......+.+. +. ..+...|+.+|
T Consensus 692 PLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp 771 (941)
T KOG0389|consen 692 PLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLP 771 (941)
T ss_pred hhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHH
Confidence 0000 0 00000000000 00 00122233332
Q ss_pred -----------------------------CCcEEEecCCCCHHHHHHHHHHHhCCC-C-CeEEeccccccccCCCceEEE
Q 000324 794 -----------------------------PYGFAIHHAGMTRGDRQLVEDLFGDGH-V-QVLVSTATLAWGVNLPAHTVI 842 (1665)
Q Consensus 794 -----------------------------~~gv~~~Hagm~~~dR~~v~~~F~~g~-i-~VLVaT~tla~GVdlP~v~vV 842 (1665)
.+++.-+-|...-.+|+.+.+.|...+ + -.|++|.+.+.|||+-+..+|
T Consensus 772 ~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~V 851 (941)
T KOG0389|consen 772 KIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTV 851 (941)
T ss_pred HHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceE
Confidence 234455678889999999999997543 4 358899999999999999999
Q ss_pred EecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHH-HHHhhcCCCccccchhH
Q 000324 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY-YLSLMNQQLPIESQFVS 910 (1665)
Q Consensus 843 I~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll~~~~piES~l~~ 910 (1665)
|..+.-|+|-. =.|.--||-|.|..+.-.++.+.+.+..+. ...+-+..+-+|+.+.+
T Consensus 852 IihD~dFNP~d----------D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~ 910 (941)
T KOG0389|consen 852 IIHDIDFNPYD----------DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTE 910 (941)
T ss_pred EEeecCCCCcc----------cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhcc
Confidence 88666666542 356666666666667778888888877654 44455666666666544
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=94.73 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=93.5
Q ss_pred CccEEEeecccccCCCCchhHHHHHHHHHHHHhh---cC---------------CCCeEEEEcccCCChHHHHHHhcccC
Q 000324 1464 QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ---VE---------------NKIRIVALSTSLANAKDLGEWIGATS 1525 (1665)
Q Consensus 1464 ~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~---~~---------------~~~riI~lSATl~n~~dl~~wl~~~~ 1525 (1665)
.=-++||||-|.-...-|..|.-=.+|=..+... +| ...|+|..|||+.+.+ +..--|...
T Consensus 331 ~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E-~e~s~~~vv 409 (663)
T COG0556 331 DDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYE-LEQSGGNVV 409 (663)
T ss_pred cceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEEEECCCChHH-HHhccCcee
Confidence 4468999999965543333443333333222211 11 3589999999987642 111111111
Q ss_pred CcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcc
Q 000324 1526 HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605 (1665)
Q Consensus 1526 ~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~ 1605 (1665)
..+ +.|..-.-| .+.+.... .-....+..|......+.+++|-+-|++-|+.++..|
T Consensus 410 eQi--IRPTGLlDP-~ievRp~~---------~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl----------- 466 (663)
T COG0556 410 EQI--IRPTGLLDP-EIEVRPTK---------GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYL----------- 466 (663)
T ss_pred EEe--ecCCCCCCC-ceeeecCC---------CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHH-----------
Confidence 111 111111001 11121110 0112345556666677889999999999999888777
Q ss_pred cccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 000324 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1606 ~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.-++..|.|+|++...-+|..++...+.|.+.|||
T Consensus 467 ------------------------~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLV 501 (663)
T COG0556 467 ------------------------KELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (663)
T ss_pred ------------------------HhcCceEEeeeccchHHHHHHHHHHHhcCCccEEE
Confidence 33677799999999999999999999999999998
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-05 Score=102.76 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=57.5
Q ss_pred hHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcC
Q 000324 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (1665)
Q Consensus 1562 ~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~ 1641 (1665)
.....+......+.++||||+|+++|+.++..|. ..+..+.++||
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~-----------------------------------~~gi~~~~~h~ 478 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLK-----------------------------------ELGIKVRYLHS 478 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHh-----------------------------------hcceeEEEEEC
Confidence 3344555555677889999999999999998772 23456889999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1642 GLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1642 ~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
++++.+|..+++.|+.|.++||||
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~ 502 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVG 502 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEE
Confidence 999999999999999999999987
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=103.78 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHc----CC---CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q 000324 1342 FNPIQTQVFTVLYN----TD---DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~----~~---dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~ 1414 (1665)
-..+|-+|+..+.. +. =-++--|.||+|||++=.= |+..+.. +..++|..|-.-.|.|--|+-..+++++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD--DKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC--CCCCceEEEEccccceeccchHHHHHhc
Confidence 35699999998764 11 1245569999999998533 3333443 3344589999999999999999888776
Q ss_pred cCCCCcEEEEEeCCCcc------------------------------------------------------chhccCCCc
Q 000324 1415 GQGLGMRVVELTGETAM------------------------------------------------------DLKLLEKGQ 1440 (1665)
Q Consensus 1415 ~~~~~i~v~~l~G~~~~------------------------------------------------------~~~~l~~~~ 1440 (1665)
+- .+-..+++.|+... ..+.+-.++
T Consensus 486 ~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 486 NL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred CC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 52 12233333332100 001112458
Q ss_pred EEEEChhhHHHHHHhhhccccC-C----CccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1441 IIISTPEKWDALSRRWKQRKYV-Q----QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1441 IIV~TPe~l~~l~r~~~~~~~l-~----~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
++|||+.++....-..+..... . .-+.|||||+|.+.... -.++.++-..... -..+++++|||||..
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~----~~~L~rlL~w~~~--lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED----LPALLRLVQLAGL--LGSRVLLSSATLPPA 637 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH----HHHHHHHHHHHHH--cCCCEEEEeCCCCHH
Confidence 9999999997765222221111 1 24689999999885322 2234444333333 367899999999984
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00022 Score=87.22 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=181.7
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHHHhhcc-------------CCcE-------EE-------------EEECCCc-----
Q 000324 548 HSNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------VR-------------ELSGDQT----- 589 (1665)
Q Consensus 548 ~~~~kil~iaP~raLa~q~~~~~~~~~~~-------------~gi~-------V~-------------~ltGd~~----- 589 (1665)
-..+||++++|+|..|-++++.+.+.+.. +|+. .. .+.|+..
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35789999999999999999888776543 1200 00 0011100
Q ss_pred ---ccHh------hhccccEEEeChhhHHHHHh----hcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHH--
Q 000324 590 ---LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI-- 654 (1665)
Q Consensus 590 ---~~~~------~~~~~~IiV~TPekld~l~r----~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~-- 654 (1665)
+++. ...++|||||+|=-+..+.. +..+..+++.|.++|+|.+|.+.=.--..+..++..+..+-
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 0111 12368999999987755544 34566789999999999999875433334444444432110
Q ss_pred ---------------hhccCCeeEEEEcccCCChHHHHHHHhc--cccCceEEecCCC--------ccccceEEEEeeec
Q 000324 655 ---------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQV 709 (1665)
Q Consensus 655 ---------------~~~~~~~riV~lSATl~n~~dv~~~l~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~ 709 (1665)
.....-.|.|++|+... ++ +...++. ....|...+...+ -.+++.|.|..++.
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~-pe-~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~ 272 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT-PE-INSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDC 272 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCC-HH-HHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecC
Confidence 11123468999999864 33 3333322 1112222222222 23567777777665
Q ss_pred Cch----hHHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccc
Q 000324 710 KKP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (1665)
Q Consensus 710 ~~~----~~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 785 (1665)
... ..++....+.++..+......+.+|||++|=-+=.++-..|+...
T Consensus 273 ~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---------------------------- 324 (442)
T PF06862_consen 273 SSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---------------------------- 324 (442)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC----------------------------
Confidence 443 334555555455555433346789999999888777777776322
Q ss_pred cchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEecc--ccccccCCCceEEEEecccccCCCCCCcccCCHHH
Q 000324 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA--TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (1665)
Q Consensus 786 ~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~--tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~ 863 (1665)
..++..|.-.+..+-...-..|..|+.+||+-|- -.=+=..+.++..||- |.+|.. +-=..+
T Consensus 325 ---------~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~E 388 (442)
T PF06862_consen 325 ---------ISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSE 388 (442)
T ss_pred ---------CeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHH
Confidence 1255668888889989999999999999999995 2234456677777887 888762 112345
Q ss_pred HHhhhcccCC-CCCCCceEEEEEeCCCcHHHHH
Q 000324 864 IMQMLGRAGR-PQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 864 ~~Qr~GRAGR-~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
++.|++.... .+....+.|.++++.-+.-.++
T Consensus 389 l~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 389 LLNMLDESSGGEVDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred HHhhhcccccccccccCceEEEEecHhHHHHHH
Confidence 5555554432 1122356788888765544333
|
; GO: 0005634 nucleus |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-06 Score=110.19 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
++|+=.|.+-.+.-... -|+.+.||+|||+++.+|++..... +. .+-+++|+.-||.+-+..+. .+-..+|++
T Consensus 81 m~~ydVQliGg~~Lh~G-~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~-~l~~~lGl~ 153 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG-KIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMR-PLYEFLGLS 153 (913)
T ss_pred CCcchhHHHhhhHhccC-ccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHH-HHhcccCCE
Confidence 33444444444322122 5899999999999999999866555 23 68899999999999998777 555568999
Q ss_pred EEEEeCCCccc-hhccCCCcEEEEChhhH--HHHHHhh---hccccCCCccEEEeecccccC
Q 000324 1422 VVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRW---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1422 v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
|++++|+.+.. .+..-.++|+++|...+ +.+..+. ........+.++||||+|.++
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999987665 33444589999999886 2221111 112234678999999999764
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00018 Score=97.63 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=82.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
..-+|.=-||||||+.....+-..+ .. ...+++++|+-++.|-.|+.+.|+........ +. -......-
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-EL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-hc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc-cccCHHHH
Confidence 3578899999999986644433333 22 23668999999999999999999986442211 11 11111111
Q ss_pred Hhhhc--cccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~~~--~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
++.+. ...|||||-.||............-.+=-+||+||||+-..+. . ..++. ..-++...+|+|.|
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~--~----~~~~~----~~~~~a~~~gFTGT 412 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE--L----AKLLK----KALKKAIFIGFTGT 412 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH--H----HHHHH----HHhccceEEEeeCC
Confidence 12222 3489999999985554433111112223478999999754321 1 12221 12334788999999
Q ss_pred C
Q 000324 670 L 670 (1665)
Q Consensus 670 l 670 (1665)
.
T Consensus 413 P 413 (962)
T COG0610 413 P 413 (962)
T ss_pred c
Confidence 4
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-05 Score=90.48 Aligned_cols=347 Identities=18% Similarity=0.228 Sum_probs=198.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCC---Cch--HHHHHHHHHHHHHhcCCC----------C--C--------CCCC
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTG---AGK--TNVAVLTILQQLALNRND----------D--G--------SFNH 548 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTG---sGK--T~~a~l~il~~l~~~~~~----------~--g--------~~~~ 548 (1665)
..|++.|.+.+..+.+=.+ ++ .||+ .|+ +-+|.|-+++++.+.+.. . | -...
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 4689999999988776655 43 3444 455 567888888887654310 0 1 0123
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHhhccCCc---E-------EEEEECCCc-----------------------------
Q 000324 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV---K-------VRELSGDQT----------------------------- 589 (1665)
Q Consensus 549 ~~~kil~iaP~raLa~q~~~~~~~~~~~~gi---~-------V~~ltGd~~----------------------------- 589 (1665)
..+++|+|+|+|+-|-.+++.+..++....- . -+++.|+..
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 5689999999999999999999887542210 0 122333211
Q ss_pred ccHh------hhccccEEEeChhhHHHHHhh----cCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhh---
Q 000324 590 LTRQ------QIEETQIIVTTPEKWDIITRK----SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET--- 656 (1665)
Q Consensus 590 ~~~~------~~~~~~IiV~TPekld~l~r~----~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~--- 656 (1665)
++++ ....++|+||+|=-+.++... ..+..+++.+.++|||-+|.+.-..-..+..++..+..+=..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 0111 123689999999888777663 345678999999999999988754444455555544211000
Q ss_pred --------------ccCCeeEEEEcccCCChHHHHHHHhccc--cCceEEecC-----CC--ccccceEEEEeeecCchh
Q 000324 657 --------------TKEHIRLVGLSATLPNYEDVALFLRVNL--EKGLFYFDN-----SY--RPVPLSQQYIGIQVKKPL 713 (1665)
Q Consensus 657 --------------~~~~~riV~lSATl~n~~dv~~~l~~~~--~~~~~~f~~-----~~--rpv~l~~~~~~~~~~~~~ 713 (1665)
..-..|++++|+-.. .++..++...- ..|...+.+ +. --+|+.|.+..+......
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~--~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSH--PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhcc--HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 001234555555421 23333332110 112111111 11 124555555444433322
Q ss_pred ----HHHHHHHHHHHHHHHHHhCCCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchh
Q 000324 714 ----QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (1665)
Q Consensus 714 ----~~~~~~~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (1665)
.++......+...+... ...-+||+++|--+-.++-..+++....-. .+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~-t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~--------------~i------------ 582 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKR-TESGILIYIPSYFDFVRVRNYMKKEEISFV--------------MI------------ 582 (698)
T ss_pred cCchHHHHHHHHhhchhhccc-ccCceEEEecchhhHHHHHHHhhhhhcchH--------------HH------------
Confidence 23333222211111111 134589999998887777776665432211 11
Q ss_pred hhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCCeEEeccc--cccccCCCceEEEEecccccCCCCCCcccCCHHHHHhh
Q 000324 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT--LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (1665)
Q Consensus 790 ~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~VLVaT~t--la~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr 867 (1665)
|.--+++.-...-+.|-.|..+||+-|-- .-+-.++.++.-||. |.||+. +.=..+++.|
T Consensus 583 -----------~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf----YqpP~~---P~FYsEiinm 644 (698)
T KOG2340|consen 583 -----------NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF----YQPPNN---PHFYSEIINM 644 (698)
T ss_pred -----------hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE----ecCCCC---cHHHHHHHhh
Confidence 22223334445567899999999999953 345678889988898 777752 2235688999
Q ss_pred hcccCCCC--CCCceEEEEEeCCCc
Q 000324 868 LGRAGRPQ--YDSYGEGIIITGHSE 890 (1665)
Q Consensus 868 ~GRAGR~g--~d~~G~~iil~~~~~ 890 (1665)
.||+.--| ....-.|.++++.-+
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hhhhhccCCccccceEEEEEeechh
Confidence 99875433 334456777777644
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=108.52 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
-.++|-|.+....+. ..+..+++.||||+|||++|++|++..... .+. ++||-++|+.|.+|.+.+
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--~~~--~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--KEE--PVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--cCC--eEEEEcCCHHHHHHHHHh
Confidence 378999999665544 456668999999999999999999865554 234 899999999999998763
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=7e-05 Score=92.07 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+-|.|..++..++-. ..--|+...-|-|||+..+-.|+..-......++...... +++||||. +|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 6778999999876532 2246788899999999666566654333222222222233 69999996 6788999999
Q ss_pred HHhhccCCcEEEEEECCC--cccHhhhccccEEEeChhhHHH----HHhhcCCCccccce--eEEEEecccccccCCchH
Q 000324 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDI----ITRKSGDRTYTQLV--KLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~--~~~~~~~~~~~IiV~TPekld~----l~r~~~~~~~l~~v--~liIiDEaH~l~d~rg~~ 642 (1665)
.+++...-++|..++|.. ......+..++|+|||+.-... =+........+..| .-||+||||.+-+... .
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t-q 481 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT-Q 481 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch-h
Confidence 999998889999999987 3445667899999999873211 11122333444444 4699999999875432 2
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEEcccC-CC-hH---HHHHHHhccc
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATL-PN-YE---DVALFLRVNL 684 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~lSATl-~n-~~---dv~~~l~~~~ 684 (1665)
-...|.++ ....| -++|+|. .| .- .+-+||++.|
T Consensus 482 ~S~AVC~L-------~a~~R-WclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 482 CSKAVCKL-------SAKSR-WCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred HHHHHHHH-------hhcce-eecccCccccchhHHHHHHHHhcCCC
Confidence 22233333 23344 4566663 33 22 3445565543
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-05 Score=95.36 Aligned_cols=218 Identities=20% Similarity=0.238 Sum_probs=135.0
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh-ccCC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEK 1438 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~-~l~~ 1438 (1665)
++-++||.||||.-| |+++.. .+ +++|--|.|-||.++++++.+ .|+.+..+||+...... --..
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCCCc
Confidence 667899999999876 566665 23 789999999999999998872 37888999997443211 1123
Q ss_pred CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC-CCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChHHH
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~-~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~dl 1517 (1665)
++.+-||.|+.. .-..++..||||+++|.+ .+|..|-..+--+. ...+.+.|=-|-++=.+.+
T Consensus 260 a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~~i 323 (700)
T KOG0953|consen 260 AQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVRKI 323 (700)
T ss_pred ccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHHHH
Confidence 578888887643 123578999999999987 55777766543221 2233333322222222233
Q ss_pred HHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHh
Q 000324 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (1665)
Q Consensus 1518 ~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~ 1597 (1665)
++-.|.. +....-.|-.|+.+. ......+ ..+.++. -|.|-|++..-.+...+
T Consensus 324 ~k~TGd~----vev~~YeRl~pL~v~-----------------~~~~~sl-~nlk~GD--CvV~FSkk~I~~~k~kI--- 376 (700)
T KOG0953|consen 324 LKMTGDD----VEVREYERLSPLVVE-----------------ETALGSL-SNLKPGD--CVVAFSKKDIFTVKKKI--- 376 (700)
T ss_pred HhhcCCe----eEEEeecccCcceeh-----------------hhhhhhh-ccCCCCC--eEEEeehhhHHHHHHHH---
Confidence 3333321 111111222232221 1111111 1213332 35566787776666555
Q ss_pred cccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCCHHHHHHHHHHHhc--CCceEEEC
Q 000324 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKICYR 1665 (1665)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~~~dR~~v~~~F~~--G~i~VLVC 1665 (1665)
.....+.+++++|+++++-|..--.+|.+ +..+|||+
T Consensus 377 -------------------------------E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVA 415 (700)
T KOG0953|consen 377 -------------------------------EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVA 415 (700)
T ss_pred -------------------------------HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEe
Confidence 13345669999999999999999999998 99999984
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=97.35 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
-..|+|+|++|+...+. .++.-=+.+..|+|||..++- |...+.. . ++|+++|+.+|..|.++.|...
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~--~iL~LvPSIsLLsQTlrew~~~-- 229 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----A--RILFLVPSISLLSQTLREWTAQ-- 229 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----h--heEeecchHHHHHHHHHHHhhc--
Confidence 46899999999999875 345566778899999999844 3333333 2 8999999999999999999843
Q ss_pred CCCCcEEEEEeCCCccc------------------hh----------ccCCCcEEEEChhhHHHHHHhhhccccCCCccE
Q 000324 1416 QGLGMRVVELTGETAMD------------------LK----------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~------------------~~----------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (1665)
+.+.++...++++.... .+ .-.+--||++|-+.+..+-.- ++.-+..+++
T Consensus 230 ~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDl 307 (1518)
T COG4889 230 KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDL 307 (1518)
T ss_pred cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccE
Confidence 23456666666653221 00 011225888998887666543 5667889999
Q ss_pred EEeecccccC
Q 000324 1468 FIIDELHLIG 1477 (1665)
Q Consensus 1468 lViDEaH~l~ 1477 (1665)
||.||||+-.
T Consensus 308 iicDEAHRTt 317 (1518)
T COG4889 308 IICDEAHRTT 317 (1518)
T ss_pred EEecchhccc
Confidence 9999999753
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.1e-05 Score=88.14 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.|+++|--+.-.+..+ -|+...||=|||+++.++..-.... +..+-+|+...-||..=++.+...+
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 6778888777655333 4899999999999988777655443 3468889999999999999999999
Q ss_pred ccCCcEEEEEECCCcccH-hhhccccEEEeChhhH--HHHHhhcCC---CccccceeEEEEecccccc
Q 000324 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~liIiDEaH~l~ 636 (1665)
..+|++|+..+++.+... +..-.++|+++|...+ |.|..+... ........++||||||.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999887543 3455789999999985 666554422 1224678999999999653
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00049 Score=88.55 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHc---C-----C-CcEEEECCCCChHHHHHHHHHHHHHHhhcCC-----CCeEEEEEcccHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYN---T-----D-DNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~---~-----~-dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~r~l~I~PtreLa~ 1404 (1665)
...++|+|.+.|.-++. | + .-.|+.=..|+|||+....-|...+.+. +. . ++|||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~-P~~~~~~~--k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQF-PQAKPLIN--KPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhC-cCcccccc--ccEEEccH-HHHH
Confidence 35789999999998874 1 1 1256666789999999877777777774 44 3 79999996 6777
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCccc---h-hcc------CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeeccc
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---L-KLL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (1665)
Q Consensus 1405 Q~~~~~~~~~~~~~~i~v~~l~G~~~~~---~-~~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH 1474 (1665)
-+.++|.+-.+. ..+....++|..... . .++ -...|.+.+-+.+....+. .....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCC
Confidence 777777643332 245566666665531 0 011 1124666676666544433 346789999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1475 ~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
++-+... .+......+..+.| |+||.|+-
T Consensus 387 rlkN~~s--------~~~kaL~~l~t~rR-VLLSGTp~ 415 (776)
T KOG0390|consen 387 RLKNSDS--------LTLKALSSLKTPRR-VLLTGTPI 415 (776)
T ss_pred Cccchhh--------HHHHHHHhcCCCce-EEeeCCcc
Confidence 9965432 22222333444444 67788863
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0003 Score=90.77 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=83.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.-+.-.-||-|||+++.+|+.-.... +..+.+|...--||.--+......+..+|++|+....+.+...
T Consensus 95 g~iaEM~TGEGKTL~atlp~ylnaL~-----------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~e 163 (822)
T COG0653 95 GDIAEMRTGEGKTLVATLPAYLNALA-----------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEE 163 (822)
T ss_pred CceeeeecCCchHHHHHHHHHHHhcC-----------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHH
Confidence 35788999999999999987644332 2247778888889988888888889999999999988886653
Q ss_pred -hhhccccEEEeChhhH--HHHHhhc---CCCccccceeEEEEeccccc
Q 000324 593 -QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 593 -~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~liIiDEaH~l 635 (1665)
+..-.++|.++|-..+ |.+.-+. .+..+.....+-|+||++.+
T Consensus 164 k~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 164 KRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3456899999998874 5443332 12234455788899999865
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00039 Score=82.34 Aligned_cols=220 Identities=16% Similarity=0.238 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
|-=-|+.-|-.++..+.-+++++.||||||.-.--..+...... .+ .+..--|.|--|.++..+....+. +.
T Consensus 47 Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RVadEMD----v~ 118 (699)
T KOG0925|consen 47 PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRVADEMD----VT 118 (699)
T ss_pred chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHHHHHhc----cc
Confidence 33346677777887788789999999999975322222222221 12 577788999999888877664443 33
Q ss_pred EEEEeCCCccchhccCCCcEEEEChhhHHH------HHHhhhccccCCCccEEEeecccc--cCCCCchhHHHHHHHHHH
Q 000324 1422 VVELTGETAMDLKLLEKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHL--IGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1422 v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~llViDEaH~--l~~~~g~~~e~~~srl~~ 1493 (1665)
.+.-.|-. .. .+. .+||..+.. ++|.-.....+...+.+|+||||. +..+ .++--++.
T Consensus 119 lG~EVGys-Ir---fEd----C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATD------iLmGllk~ 184 (699)
T KOG0925|consen 119 LGEEVGYS-IR---FED----CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATD------ILMGLLKE 184 (699)
T ss_pred cchhcccc-cc---ccc----cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHH------HHHHHHHH
Confidence 32222211 11 111 134444322 233333455688899999999993 3222 24444555
Q ss_pred HHhhcCCCCeEEEEcccCCChHHHHHHhcccCCcEEecCCCCCccceEEEEeecccchhhHHHHhcChhHHHHHHHHhcC
Q 000324 1494 IASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSATl~n~~dl~~wl~~~~~~~~~f~~~~rpv~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~ 1573 (1665)
+.... ++.++|.+|||+ .+..+..+++..+ +..++. .. |+++....-...+ ++.+..+..++.... ..
T Consensus 185 v~~~r-pdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~~--PvEi~Yt~e~erD---ylEaairtV~qih~~--ee 252 (699)
T KOG0925|consen 185 VVRNR-PDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPG-TH--PVEIFYTPEPERD---YLEAAIRTVLQIHMC--EE 252 (699)
T ss_pred HHhhC-CCceEEEeeccc-chHHHHHHhCCCC--eeecCC-CC--ceEEEecCCCChh---HHHHHHHHHHHHHhc--cC
Confidence 55554 599999999998 5556667776543 344333 33 4454332222222 222222333222222 33
Q ss_pred CCCEEEEeCchHHHHHHHHHHH
Q 000324 1574 EKPALVFVPSRKYVRLTAVDLM 1595 (1665)
Q Consensus 1574 ~~~~IVFv~sr~~a~~la~~L~ 1595 (1665)
.+-++||.......+..+..+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~ 274 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKIS 274 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHH
Confidence 4569999999998888887775
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00067 Score=87.06 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
+.-.+|-||.|||||.+..-.+-..+. .+.. ++++|+..++|+.+...+++.. + ..|.....-.++...+ .
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~--~VLvVShRrSL~~sL~~rf~~~-~-l~gFv~Y~d~~~~~i~---~ 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK--NPDK--SVLVVSHRRSLTKSLAERFKKA-G-LSGFVNYLDSDDYIID---G 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc--CCCC--eEEEEEhHHHHHHHHHHHHhhc-C-CCcceeeecccccccc---c
Confidence 333688999999999876443322222 2344 8999999999999999988732 1 1122211111111111 0
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCC-Cchh---HHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPV---LEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~-~g~~---~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
+..+-++++.+.+..+ ....+.+.++|||||+-.+... ..+. .+.+...+..+ +....++|++-|++.
T Consensus 120 ~~~~rLivqIdSL~R~-----~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRL-----DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehhhhhc-----ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEecCCCC
Confidence 1235555655544322 2234677999999999855432 1222 23344444444 345678999999997
Q ss_pred Ch-HHHHHHh
Q 000324 1513 NA-KDLGEWI 1521 (1665)
Q Consensus 1513 n~-~dl~~wl 1521 (1665)
+. -++.+-+
T Consensus 192 ~~tvdFl~~~ 201 (824)
T PF02399_consen 192 DQTVDFLASC 201 (824)
T ss_pred HHHHHHHHHh
Confidence 63 2444444
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.1e-05 Score=86.18 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..|++.|--+.-.+.. +-|+.+.||-|||+++.+|+.-+... +. .+=+|+.+.-||..=++.+...| ..+|
T Consensus 76 ~~p~~vQll~~l~L~~---G~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y-~~LG 146 (266)
T PF07517_consen 76 LRPYDVQLLGALALHK---GRLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFY-EFLG 146 (266)
T ss_dssp ----HHHHHHHHHHHT---TSEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHH-HHTT
T ss_pred CcccHHHHhhhhhccc---ceeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHH-HHhh
Confidence 3566666666544533 24999999999999998888765554 22 67889999999999998887444 4689
Q ss_pred cEEEEEeCCCccch-hccCCCcEEEEChhhHHH-HHH-hhhc---cccCCCccEEEeecccccC
Q 000324 1420 MRVVELTGETAMDL-KLLEKGQIIISTPEKWDA-LSR-RWKQ---RKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~-~~l~~~~IIV~TPe~l~~-l~r-~~~~---~~~l~~v~llViDEaH~l~ 1477 (1665)
++|+..+++.+.+. +..-.++|+.+|...+.. .+| ++.. ........++||||+|.++
T Consensus 147 lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999877552 344467999999998743 333 2221 1124689999999999664
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.3e-05 Score=84.79 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
+||+-|.+++..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+.+.++..++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999988876544899999999999655443333321000 00012356899999999999999999988
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=94.72 Aligned_cols=53 Identities=28% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEE
Q 000324 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (1665)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (1665)
.++.|++-++|..|-|-|.+-+|.. ..... |...-.|.+||.-|...|..|+-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~----l~~~~------s~~~~~q~~gr~lr~~vnq~G~R 553 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAK----LRSSG------SETSKLQEVGRGLRLPVDENGHR 553 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEE----eccCC------chHHHHHHhccceeccccccCcc
Confidence 6789999999999999999988876 43332 67788999999999888777754
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0001 Score=90.06 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
+|+..||.-|+.|+..++... --||.||.|+|||.+..-.+.+.+..+ .+.|++++|.-..+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rp-lsLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRP-LSLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCC-ceeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 578899999999999998764 489999999999998876666666554 457999999999999998887
Q ss_pred HHhhccCCcEEEEEEC
Q 000324 571 SNRLQMYDVKVRELSG 586 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltG 586 (1665)
.+ .|++|..+..
T Consensus 475 h~----tgLKVvRl~a 486 (935)
T KOG1802|consen 475 HK----TGLKVVRLCA 486 (935)
T ss_pred Hh----cCceEeeeeh
Confidence 65 3778777654
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=95.00 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH-----HHhcCC-CC--cEEEEEeCCC
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE-----IKFGQG-LG--MRVVELTGET 1429 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~-----~~~~~~-~~--i~v~~l~G~~ 1429 (1665)
-|+.+.|+||+|||.+|+-.|+...... ... +.||+||+.++...+.+-+. ..|... .+ +....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~--~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLF--KFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCc--EEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 3799999999999999999988776662 233 89999999999888876544 334322 22 3444454432
Q ss_pred ---------ccchh-ccC-------CCcEEEEChhhHHHH-H-Hhh------hcc-c---cCC-CccEEEeecccccCCC
Q 000324 1430 ---------AMDLK-LLE-------KGQIIISTPEKWDAL-S-RRW------KQR-K---YVQ-QVSLFIIDELHLIGGQ 1479 (1665)
Q Consensus 1430 ---------~~~~~-~l~-------~~~IIV~TPe~l~~l-~-r~~------~~~-~---~l~-~v~llViDEaH~l~~~ 1479 (1665)
....+ ... .-+|+|.|.+.+..- . +.. .+. . .++ .-=.||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 11111 111 248999999988641 1 111 001 1 111 2247899999999542
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1480 ~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+..++.+ . .+. +.-++.+|||.++
T Consensus 217 -~k~~~~i----~----~ln-pl~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI----E----ALK-PQMIIRFGATFPD 240 (986)
T ss_pred -hHHHHHH----H----hcC-cccEEEEeeecCC
Confidence 2333322 1 122 3335779999976
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=84.43 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHH-----hhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ-----KASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~-----~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
++|+-|.+|+..++....-.+|.+|+|+|||.+..-.+...+. ....+. ++++++|+..-++++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 4789999999999875443799999999999665444443321 122344 899999999999999999884
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.7e-05 Score=85.01 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH------
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV------ 566 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~------ 566 (1665)
++..|.-|..++..++ ..+.+++.||.|||||++++.+.++.+.... --+++|+-|..+...++
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~---------~~kiii~Rp~v~~~~~lGflpG~ 71 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGE---------YDKIIITRPPVEAGEDLGFLPGD 71 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--TT----SS---
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------CcEEEEEecCCCCccccccCCCC
Confidence 3457899999999988 5677999999999999999999999887632 23899998887542221
Q ss_pred -HHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHH
Q 000324 567 -VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (1665)
Q Consensus 567 -~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~ 645 (1665)
.+.+.-++.++--....+.|... -........|-+..+.- .|.. . ++ -.+||+|||+.+. ...+..
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~-~~~~~~~~~Ie~~~~~~----iRGr---t-~~-~~~iIvDEaQN~t---~~~~k~ 138 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEK-LEELIQNGKIEIEPLAF----IRGR---T-FD-NAFIIVDEAQNLT---PEELKM 138 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTC-HHHHHHTTSEEEEEGGG----GTT------B--SEEEEE-SGGG-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHh-HHHHhhcCeEEEEehhh----hcCc---c-cc-ceEEEEecccCCC---HHHHHH
Confidence 11111111000000000001111 12223445566666551 2211 1 22 2799999999764 334555
Q ss_pred HHHHHHHHHhhccCCeeEEEEccc
Q 000324 646 IVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 646 iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
+++|+ ..+.++|++.-.
T Consensus 139 ilTR~-------g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRI-------GEGSKIIITGDP 155 (205)
T ss_dssp HHTTB--------TT-EEEEEE--
T ss_pred HHccc-------CCCcEEEEecCc
Confidence 55543 667787776433
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=94.47 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~ 1421 (1665)
++|+=.|.+-.+.-... -|+.+.||-|||+++.+|+.-.... +. .+-+|+++.-||..-.+.+. .+-..+|++
T Consensus 84 ~r~ydVQliGgl~Lh~G-~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~-~vy~~LGLt 156 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEG-QIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMG-QVHRFLGLS 156 (939)
T ss_pred CCcchhHHHhhhhhcCC-ceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHH-HHHHHhCCe
Confidence 44444444544332222 5899999999999999998754444 22 58899999999998777555 555668999
Q ss_pred EEEEeCCCccc-hhccCCCcEEEEChhhH--HHHHHhh---hccccCCCccEEEeecccccC
Q 000324 1422 VVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRW---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1422 v~~l~G~~~~~-~~~l~~~~IIV~TPe~l--~~l~r~~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
|+...++.+.. .+..-.+||+.+|+..+ +.+-.+. ........+.+.||||+|.++
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99998877665 34556789999999987 2111111 112234678899999999664
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00038 Score=86.70 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHH---HcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~l---l~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++++|.+-++.+ ++.+-|.|+.-.-|-|||+-. ++++.++.... -.| .-+||+|.--| ..+.++++ +|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G--PfLVi~P~StL-~NW~~Ef~-rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG--PFLVIAPKSTL-DNWMNEFK-RFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC--CeEEEeeHhhH-HHHHHHHH-HhC
Confidence 47888998877654 556667999999999999864 33333333321 233 57899998766 44666677 666
Q ss_pred CCCCcEEEEEeCCCccchh----ccC--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHH
Q 000324 1416 QGLGMRVVELTGETAMDLK----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~~----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~s 1489 (1665)
+ ++++..++|+...... .+. .-+|+|+|-|....--.-.+ --+-+++||||+|+|-... +
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk----~~~W~ylvIDEaHRiKN~~--------s 306 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLK----KFNWRYLVIDEAHRIKNEK--------S 306 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHh----cCCceEEEechhhhhcchh--------h
Confidence 4 6899999998754422 222 34999999998753211111 1246799999999997544 3
Q ss_pred HHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1490 RMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1490 rl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
++..+.+.+....++++..+++.|
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQN 330 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQN 330 (971)
T ss_pred HHHHHHHHhcccceeEeeCCcccc
Confidence 333444455556665554444544
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=78.35 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
+||+-|.+++..++.+++ -.+|+||.|+|||.+. -.+...+... +.++++++||...+.++.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 478999999999987765 4677899999999854 3455555442 45899999999998886655
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0001 Score=95.40 Aligned_cols=128 Identities=19% Similarity=0.120 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000324 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v 1422 (1665)
+|+=.|.+..+.-. +.-++.+.||.|||+++.+|+.-.... +. .+-||+++..||.+-++.+. .+-..+|++|
T Consensus 76 r~ydvQlig~l~L~-~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~-pvy~~LGLsv 148 (870)
T CHL00122 76 RHFDVQLIGGLVLN-DGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMG-QIYRFLGLTV 148 (870)
T ss_pred CCCchHhhhhHhhc-CCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHH-HHHHHcCCce
Confidence 33344444444332 237899999999999999998633333 22 68899999999999888666 5555689999
Q ss_pred EEEeCCCccch-hccCCCcEEEEChhhHH-HHHHh-hh---ccccCCCccEEEeecccccC
Q 000324 1423 VELTGETAMDL-KLLEKGQIIISTPEKWD-ALSRR-WK---QRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1423 ~~l~G~~~~~~-~~l~~~~IIV~TPe~l~-~l~r~-~~---~~~~l~~v~llViDEaH~l~ 1477 (1665)
+...++.+... +..-.++|+.+|...+- +.+|. .. .......+.+.||||+|.++
T Consensus 149 g~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 149 GLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99988877653 34456799999998652 22322 11 11234568899999999654
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00068 Score=80.59 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=101.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
++.+-|+|.+-+...++.+..+++.-.-|-|||+-| ++|...... .. -.|||||. .+-..+.+.+...|....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra---Ew--plliVcPA-svrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA---EW--PLLIVCPA-SVRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh---cC--cEEEEecH-HHhHHHHHHHHHhccccc
Confidence 456778999999888887777999999999999988 455555444 22 58899996 344556666664444433
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
. |..+.++...-......+.|.|.+-+.+..+-..... ...+++|+||+|++-+........++.- +
T Consensus 269 p--i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~----~~~~vvI~DEsH~Lk~sktkr~Ka~~dl-------l 335 (689)
T KOG1000|consen 269 P--IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKK----EKYRVVIFDESHMLKDSKTKRTKAATDL-------L 335 (689)
T ss_pred c--eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHhc----ccceEEEEechhhhhccchhhhhhhhhH-------H
Confidence 3 4344444333222334557889998887655443222 3478999999999976543333333322 2
Q ss_pred CCCCeEEEEcccCCC
Q 000324 1499 ENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n 1513 (1665)
..-.++|+||.|++=
T Consensus 336 k~akhvILLSGTPav 350 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAV 350 (689)
T ss_pred HHhhheEEecCCccc
Confidence 335678999999864
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=86.72 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.6
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc-hhccCC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEK 1438 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~-~~~l~~ 1438 (1665)
-|.-+.||-|||+++.||+.-.... +. .+=+|+..--||..=. .|...+-..+|++|+++..+.+.+ .+..-.
T Consensus 154 ~IAEM~TGEGKTLvatlp~yLnAL~---G~--gVHvVTvNDYLA~RDa-ewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~ 227 (1025)
T PRK12900 154 KISEMATGEGKTLVSTLPTFLNALT---GR--GVHVVTVNDYLAQRDK-EWMNPVFEFHGLSVGVILNTMRPEERREQYL 227 (1025)
T ss_pred CccccCCCCCcchHhHHHHHHHHHc---CC--CcEEEeechHhhhhhH-HHHHHHHHHhCCeeeeeCCCCCHHHHHHhCC
Confidence 4789999999999999999755554 22 2445555555665544 355455566899999997776655 445567
Q ss_pred CcEEEEChhhHH-HHHHh-h---hccccCCCccEEEeecccccC
Q 000324 1439 GQIIISTPEKWD-ALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1439 ~~IIV~TPe~l~-~l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+||+.+|...|- +.+|. . ..........+.||||+|.++
T Consensus 228 ~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 228 CDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 899999998761 12221 1 111223567899999999653
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.8e-05 Score=81.73 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH---HHHHHHhcC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFGQ 1416 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~---~~~~~~~~~ 1416 (1665)
.-.|+-|..++.++++ .+.+++.+|.|+|||+++....++.+.. ..-. +++|+-|..+..+.+- ....+++..
T Consensus 3 ~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCccccccCCCCHHHHHHH
Confidence 3468899999999994 6679999999999999999999998887 3344 8999988875421110 000111110
Q ss_pred CCCc---EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHH
Q 000324 1417 GLGM---RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1417 ~~~i---~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~ 1493 (1665)
...- ....+.+. ..-...+..+.|-+..+.-+ | ++ .+. -.+||+|||+.+. ...++.
T Consensus 79 ~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~i----R---Gr-t~~-~~~iIvDEaQN~t----------~~~~k~ 138 (205)
T PF02562_consen 79 YLRPIYDALEELFGK-EKLEELIQNGKIEIEPLAFI----R---GR-TFD-NAFIIVDEAQNLT----------PEELKM 138 (205)
T ss_dssp TTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGGG----T---T---B--SEEEEE-SGGG------------HHHHHH
T ss_pred HHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhhh----c---Cc-ccc-ceEEEEecccCCC----------HHHHHH
Confidence 0000 00000011 11122445566777765432 2 22 232 3899999999883 455666
Q ss_pred HHhhcCCCCeEEEEccc
Q 000324 1494 IASQVENKIRIVALSTS 1510 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSAT 1510 (1665)
+.+....+.++|++.-+
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 66777888888887643
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0023 Score=82.85 Aligned_cols=128 Identities=20% Similarity=0.114 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.|+++|--.--.+ +.+ -|..+.||-|||+++.+|+.-+... +. .+=+++...-||..=...+. .+-..+|+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg-~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMG-KVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHH-HHHHHhCC
Confidence 4555554444333 322 4799999999999999998754444 22 45577777788876655444 55566899
Q ss_pred EEEEEeCCCccc-hhccCCCcEEEEChhhHHH-HHHhh----hccccCCCccEEEeecccccC
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 ~v~~l~G~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~~----~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+|++...+.+.. .+..-.+||+.+|...|-. .+|.. ........+.+.||||+|.++
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 999998876654 3344578999999998632 33321 111233567889999999654
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=81.24 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=99.4
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHH--HHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTIC--SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~--a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
+..+.|+|+..+..+++ .+.--|++-.-|=|||+- +.|+.|.+-.. -.+ .+|||||. .++.|+.++|. .
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k--~~~--paLIVCP~-Tii~qW~~E~~-~ 276 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK--LTK--PALIVCPA-TIIHQWMKEFQ-T 276 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc--ccC--ceEEEccH-HHHHHHHHHHH-H
Confidence 45788999999988763 333478889999999964 55555555422 123 79999997 67889999999 4
Q ss_pred hcCCCCcEEEEEeCCCcc------------ch----hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1414 FGQGLGMRVVELTGETAM------------DL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~------------~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.. ..+|..++|..+. +. .....++|+|+|-+.+...- ....-..-+++|+||.|.|-
T Consensus 277 w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~----d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 277 WWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG----DDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred hCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----cccccccccEEEecCccccc
Confidence 443 4688888886552 11 12335589999977654221 11112246899999999997
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1478 ~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
....... ....++....|||+..+++.|
T Consensus 351 Npns~is--------lackki~T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 351 NPNSKIS--------LACKKIRTVHRIILSGTPIQN 378 (923)
T ss_pred CCccHHH--------HHHHhccccceEEeeCccccc
Confidence 6542211 122344556666555455555
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=84.99 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.++.++|.+.+.. +|+++=|-|+.-.+|-|||...+--|.. ++.+....| --++|+|+-.|.+ +..+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitY-LmE~K~~~G-------P~LvivPlstL~N-W~~Ef 463 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITY-LMEHKQMQG-------PFLIIVPLSTLVN-WSSEF 463 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHH-HHHHcccCC-------CeEEeccccccCC-chhhc
Confidence 3788889888765 4677778999999999999876544443 444433222 2577899988875 23344
Q ss_pred HHhhccCCcEEEEEECCCccc----Hhh-hccccEEEeChhhHHHHHhhcCCCccccce--eEEEEeccccccc
Q 000324 571 SNRLQMYDVKVRELSGDQTLT----RQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~----~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v--~liIiDEaH~l~d 637 (1665)
..+.. .+....+.|..... .+. ....+|+++|.|.. .+ +...++.| .++||||-|.|.+
T Consensus 464 ~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 464 PKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred ccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 44322 45566666643322 222 25789999999963 22 22344444 5799999999964
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00067 Score=88.62 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
..||+.|.+++..++...+.++|.||+|+|||.+..-.+.+.+.. +.+|++++|+...|.++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 478999999999998877889999999999998765544444432 34799999999999999988876
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.008 Score=73.83 Aligned_cols=192 Identities=16% Similarity=0.147 Sum_probs=105.8
Q ss_pred CCCcEEEEChhhHHHHHHh----hhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHH-----------------H
Q 000324 1437 EKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI-----------------A 1495 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~----~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i-----------------~ 1495 (1665)
.++|||||+|=-|-..+.. -....+++.|.++|+|.||.+.=..=.++..++..++.+ -
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 4679999999877665552 123347899999999999977522111222233322211 1
Q ss_pred hhcCCCCeEEEEcccCCCh-HHHHHHhcccCCcEEecCCCC--------CccceEEEEeecccchh----hHHHHhcChh
Q 000324 1496 SQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--------RPVPLEIHIQGVDITNF----EARMQAMTKP 1562 (1665)
Q Consensus 1496 ~~~~~~~riI~lSATl~n~-~dl~~wl~~~~~~~~~f~~~~--------rpv~l~i~i~~~~~~~~----~~~~~~~~k~ 1562 (1665)
.+...-.|+|++|+..... ..+-.--...-.+...+.+.. -.+++....+.++.... ..++....+.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 1111248999999876442 222221000111111111111 11223333333333322 2223333333
Q ss_pred HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCC
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~ 1642 (1665)
.+..+.. -...+.+|||+||=-.=..+-..|. .-....+.+|.-
T Consensus 290 iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-----------------------------------~~~~sF~~i~EY 333 (442)
T PF06862_consen 290 ILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-----------------------------------KENISFVQISEY 333 (442)
T ss_pred HHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-----------------------------------hcCCeEEEeccc
Confidence 3333332 1355679999999765555554441 223446788999
Q ss_pred CCHHHHHHHHHHHhcCCceEEE
Q 000324 1643 LNKTDQEVVSALFEAGKIKICY 1664 (1665)
Q Consensus 1643 m~~~dR~~v~~~F~~G~i~VLV 1664 (1665)
.+..+-..+-..|..|+.+||+
T Consensus 334 ts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 334 TSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred CCHHHHHHHHHHHHcCCceEEE
Confidence 9999999999999999999997
|
; GO: 0005634 nucleus |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=78.57 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.|-|+|.+-+..+....+ --|+.-.-|.|||..+.-.++... .+...++++|+.||. |+.+++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------~ra~tLVvaP~VAlm-QW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------DRAPTLVVAPTVALM-QWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc------------ccCCeeEEccHHHHH-HHHHHH
Confidence 344667766655433222 246778999999987765555432 133589999999985 556666
Q ss_pred HHhhccCCcEEEEEECCCc-ccHhhhccccEEEeChhhHHHHHhhcC-----------CCcccccee--EEEEecccccc
Q 000324 571 SNRLQMYDVKVRELSGDQT-LTRQQIEETQIIVTTPEKWDIITRKSG-----------DRTYTQLVK--LLIIDEIHLLH 636 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~-~~~~~~~~~~IiV~TPekld~l~r~~~-----------~~~~l~~v~--liIiDEaH~l~ 636 (1665)
..... -..+|..++|... .+-+.+.+++++.+|...+....|+.. ..+.+..++ -||+||||-+.
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 65443 3578888898654 334567899999999998888877721 234455554 59999999997
Q ss_pred cCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC-C-hH---HHHHHHhccc
Q 000324 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP-N-YE---DVALFLRVNL 684 (1665)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~-n-~~---dv~~~l~~~~ 684 (1665)
+.+..+-..+.+ + + ..+..+||.|.- | .. .+-+||+.+|
T Consensus 330 ~R~snTArAV~~-L----~----tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 330 DRQSNTARAVFA-L----E----TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred cccccHHHHHHh-h----H----hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 643333322222 1 1 123478888842 3 11 3456666654
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0069 Score=74.81 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+|-.+|-+.+..+ |..+=|-|+.-.-|-|||...+-.+.+....+.-- | --++|+|--.| ..+++++.
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIw-G-------PFLVVtpaStL-~NWaqEis 637 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIW-G-------PFLVVTPASTL-HNWAQEIS 637 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCC-C-------ceEEeehHHHH-hHHHHHHH
Confidence 5667777776653 55666889999999999998865554444443211 2 35778887666 45667777
Q ss_pred HhhccCCcEEEEEECCCcccHh------------hhccccEEEeChhhHHHHHhhcCCCccccc--eeEEEEeccccccc
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQ------------QIEETQIIVTTPEKWDIITRKSGDRTYTQL--VKLLIIDEIHLLHD 637 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~------------~~~~~~IiV~TPekld~l~r~~~~~~~l~~--v~liIiDEaH~l~d 637 (1665)
+++. .++|.-+-|+.+-.+. .....||+|||...+ ++. ..++++ ..+.|+|||+.+-.
T Consensus 638 rFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlv--VtD----eky~qkvKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 638 RFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLV--VTD----EKYLQKVKWQYMILDEAQAIKS 709 (1185)
T ss_pred HhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeee--ech----HHHHHhhhhhheehhHHHHhhh
Confidence 7665 4688888887653321 123678999988752 111 122333 35799999998865
Q ss_pred CCchHHHHHHH
Q 000324 638 NRGPVLESIVA 648 (1665)
Q Consensus 638 ~rg~~le~iv~ 648 (1665)
.....+..+++
T Consensus 710 SsS~RWKtLLs 720 (1185)
T KOG0388|consen 710 SSSSRWKTLLS 720 (1185)
T ss_pred hhhhHHHHHhh
Confidence 43333444443
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00064 Score=83.33 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=64.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
++..+|.-|..|+..++...= .||++|+|+|||++..-.+.+.... ..+ .+|+.+|+.--++|....+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~--~~~--~VLvcApSNiAVDqLaeKIh~----- 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQ--HAG--PVLVCAPSNIAVDQLAEKIHK----- 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHh--cCC--ceEEEcccchhHHHHHHHHHh-----
Confidence 578999999999999998544 8999999999999986655555444 344 899999999999999988772
Q ss_pred CCcEEEEEeC
Q 000324 1418 LGMRVVELTG 1427 (1665)
Q Consensus 1418 ~~i~v~~l~G 1427 (1665)
+|++|+.+..
T Consensus 477 tgLKVvRl~a 486 (935)
T KOG1802|consen 477 TGLKVVRLCA 486 (935)
T ss_pred cCceEeeeeh
Confidence 3577776654
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=73.91 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCCc-EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYNTDDN-VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dn-vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
++++-|.+++..++.++++ +++.+|.|+|||.+. -.+...+.. .+. ++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 4789999999999876665 567799999999864 445556665 223 899999999888875554
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0013 Score=73.45 Aligned_cols=134 Identities=20% Similarity=0.242 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHcC--CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~--~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
-..+|.|.++...+.+. +.|.+.++-.|.|||.+. +|++.....+ +. --+.+++| ++|..|.++.+..+|+..
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd--g~-~LvrviVp-k~Ll~q~~~~L~~~lg~l 96 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD--GS-RLVRVIVP-KALLEQMRQMLRSRLGGL 96 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC--CC-cEEEEEcC-HHHHHHHHHHHHHHHHHH
Confidence 36899999999999863 468999999999999985 7877776663 22 13445555 579999999999999988
Q ss_pred CCcEEEEEeCCCccc--h-----------hccCCCcEEEEChhhHHHHHHhhhc----------------cccCCCccEE
Q 000324 1418 LGMRVVELTGETAMD--L-----------KLLEKGQIIISTPEKWDALSRRWKQ----------------RKYVQQVSLF 1468 (1665)
Q Consensus 1418 ~~i~v~~l~G~~~~~--~-----------~~l~~~~IIV~TPe~l~~l~r~~~~----------------~~~l~~v~ll 1468 (1665)
.+.+|..+.=+.... . ...+.+-|+++|||.+.++.-.+.. ...+.....=
T Consensus 97 ~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 97 LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 888877665433222 1 1224567999999998664221110 1123456667
Q ss_pred EeecccccCC
Q 000324 1469 IIDELHLIGG 1478 (1665)
Q Consensus 1469 ViDEaH~l~~ 1478 (1665)
|+||+|.+++
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 9999997763
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00045 Score=78.48 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra 561 (1665)
++...|..|...+..+. ..+.+++.||+|+|||+.+....++.+.... --++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 45667899999888654 4678999999999999999887776664321 225677767654
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=89.55 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=89.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccc-hhcc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLL 1436 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~-~~~l 1436 (1665)
...+|+=-||||||+.....+-..+.. ...+.+++|+-+++|-.|+.+.+. .|+....... ..+.... .+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~-~~~~~~~~~~---~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ-SFGKVAFNDP---KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH-HHHHhhhhcc---cccCHHHHHHHH
Confidence 358999999999999976655443433 333499999999999999999999 6664321111 1111111 2233
Q ss_pred C--CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1437 E--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1437 ~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
+ ...|||+|..+|............-.+==+||+||||+-.... ...+|+... ++...+|||.|+--.
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~------~~~~~~~~~----~~a~~~gFTGTPi~~ 416 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE------LAKLLKKAL----KKAIFIGFTGTPIFK 416 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH------HHHHHHHHh----ccceEEEeeCCcccc
Confidence 3 3489999999998766442111122233478999999864322 334444332 347899999997543
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00096 Score=62.00 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
++..++.++.-++|.||.|||||....-.+...+..... .+.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455455544545669999999997776666666532111 1347999999999999988887
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00063 Score=83.55 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
+.+++-|.+++..+++..+-+++.||+|+|||.....-|.+.+.+ +.+|++.+|+..-+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------CCeEEEEcCchHHHHHHHHHhc
Confidence 478999999999999887778999999999999888877777765 3489999999999999888754
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0022 Score=76.05 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHcCCC----cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~d----nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
-.+-|+|.+-+..+....+ --++.-.-|.|||+-+...++.. ..+. ..|+++|+.+| .|+.+++. ++.
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra--~tLVvaP~VAl-mQW~nEI~-~~T 254 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRA--PTLVVAPTVAL-MQWKNEIE-RHT 254 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccC--CeeEEccHHHH-HHHHHHHH-Hhc
Confidence 3567888887766543222 24666789999999876555542 2223 69999999998 57777777 554
Q ss_pred CCCCcEEEEEeCCCc-cchhccCCCcEEEEChhhHHHHHHhhhc-----------cccCCC--ccEEEeecccccCCCCc
Q 000324 1416 QGLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-----------RKYVQQ--VSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~-~~~~~l~~~~IIV~TPe~l~~l~r~~~~-----------~~~l~~--v~llViDEaH~l~~~~g 1481 (1665)
. ...+|..++|... .+.+.+.+.++|++|...+.+..|+-.. ...+.+ .-.||+||||-|-+...
T Consensus 255 ~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 255 S-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred c-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 4 4578888888643 3466778889999999998887765211 112333 45689999999976443
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh--H---HHHHHhcccC
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--K---DLGEWIGATS 1525 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~--~---dl~~wl~~~~ 1525 (1665)
..-+.+. .+ . ....++||.|+-.. . .+..+|...+
T Consensus 334 nTArAV~-~L-------~-tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 334 NTARAVF-AL-------E-TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred cHHHHHH-hh-------H-hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 2222222 11 1 23347888886432 1 3445555544
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0026 Score=83.20 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
..+|+.|.+|+..++...+.++|.+|+|+|||.+..-.+...+.. +. ++++++||..-++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CC--CEEEEcCcHHHHHHHHHHHHh
Confidence 578999999999998877889999999999998765544444433 22 899999999999999888774
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.002 Score=86.09 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
|..++|.|.+....++ ..+.++++.||||+|||++.+.|.+......+.. ++++|.+.|..=..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~--~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEV--RKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcccc--ccEEEEcccchHHHHHHHHHHh
Confidence 7778999999988866 3567799999999999999999999877653322 3999999999999999999994
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=67.08 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHH----------HHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK----------ERY 1407 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~----------Q~~ 1407 (1665)
++.-.|..|...+..+.+ .+.+++.+|+|+|||..+....+..+... .-. ++++.-|+.+..+ +.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~--kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHK-DVD--RIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cee--EEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 355678899999998876 56899999999999999988888766542 222 6777777754321 222
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCccchhc--cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHH
Q 000324 1408 RDWEIKFGQGLGMRVVELTGETAMDLKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1408 ~~~~~~~~~~~~i~v~~l~G~~~~~~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
.-|..-+-..+.. +.|.... ... .+.+.|-|.... ++|. + .+ +-++||+|||+.+.
T Consensus 132 ~p~~~pi~D~L~~----~~~~~~~-~~~~~~~~~~Iei~~l~----ymRG---r-tl-~~~~vIvDEaqn~~-------- 189 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGASFM-QYCLRPEIGKVEIAPFA----YMRG---R-TF-ENAVVILDEAQNVT-------- 189 (262)
T ss_pred HHHHHHHHHHHHH----HhChHHH-HHHHHhccCcEEEecHH----HhcC---C-cc-cCCEEEEechhcCC--------
Confidence 2222111111100 0111111 111 134556666532 3332 2 22 34899999999995
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1486 VIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
...++.+.+..+.+.++|+..-
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeCC
Confidence 2344555556677888877653
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0034 Score=58.35 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1349 a~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
|+...+.++.-++|.+|+|||||....-.+...+... .... ++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 3443334344355699999999977766666666421 1233 8999999999999888766
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.003 Score=78.29 Aligned_cols=175 Identities=21% Similarity=0.214 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHc----CCCcEEEECCCCChHHHHHHHHHHHHHHhh------cCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~----~~dnvlv~ApTGSGKTl~a~l~il~~l~~~------~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
.+-|.|.+++..+.- .++-.|+.-.-|-|||+...-.|+..-... .+... .+|||||- .|+.|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 577899999987763 233478888899999997655444322211 11111 58999996 6889999999
Q ss_pred HHHhcCCCCcEEEEEeCCCcc--chhccCCCcEEEEChhhHHH----HHHhhhccccCCC--ccEEEeecccccCCCCch
Q 000324 1411 EIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQ--VSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1411 ~~~~~~~~~i~v~~l~G~~~~--~~~~l~~~~IIV~TPe~l~~----l~r~~~~~~~l~~--v~llViDEaH~l~~~~g~ 1482 (1665)
.+++... -++|..++|.... ..+.++..||||+|..-+.. -+........+.+ ...||+||||.+-....
T Consensus 403 ~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t- 480 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT- 480 (901)
T ss_pred HHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch-
Confidence 9888754 5789999997643 35677889999999765543 1111111122333 35799999999965431
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcccCC-Ch-H---HHHHHhcccCCc
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLA-NA-K---DLGEWIGATSHG 1527 (1665)
Q Consensus 1483 ~~e~~~srl~~i~~~~~~~~riI~lSATl~-n~-~---dl~~wl~~~~~~ 1527 (1665)
.-...+-+++ ...| .++|+|+- |. - .+..|+++.+..
T Consensus 481 q~S~AVC~L~-------a~~R-WclTGTPiqNn~~DvysLlrFLr~~pF~ 522 (901)
T KOG4439|consen 481 QCSKAVCKLS-------AKSR-WCLTGTPIQNNLWDVYSLLRFLRCPPFG 522 (901)
T ss_pred hHHHHHHHHh-------hcce-eecccCccccchhHHHHHHHHhcCCCcc
Confidence 1112222222 2333 67777753 32 1 355666666543
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0078 Score=72.57 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEE-EECCCCChH--HHHHHHHHHHHHHhhc------------C--------------CC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVL-VAAPTGSGK--TICSEFAILRNHQKAS------------E--------------TG 1389 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvl-v~ApTGSGK--Tl~a~l~il~~l~~~~------------~--------------~~ 1389 (1665)
-..+|+.|.+.+..+.+-+| ++ ....-+.|+ +-+|.+-+++|+.... . -.
T Consensus 214 s~pltalQ~~L~~~m~~YrD-l~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRD-LLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred cCcchHHHHHHHHHHHhhhh-hccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 35789999999999887666 43 222334455 5678888888876531 0 01
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHhc-CCCCcEEE--------EEeC---------------------CCccc-------
Q 000324 1390 VMRAVYIAPLEALAKERYRDWEIKFG-QGLGMRVV--------ELTG---------------------ETAMD------- 1432 (1665)
Q Consensus 1390 ~~r~l~I~PtreLa~Q~~~~~~~~~~-~~~~i~v~--------~l~G---------------------~~~~~------- 1432 (1665)
.|++||+||+|+-|..+.+.+...+. ...|+..+ .+.| ++...
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 37999999999999999999886633 22221111 1122 11110
Q ss_pred ----hh---ccCCCcEEEEChhhHHHHHHhh----hccccCCCccEEEeecccccCCCCchhHHHHHHHHHHH
Q 000324 1433 ----LK---LLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1433 ----~~---~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i 1494 (1665)
.+ ....+||+||+|=-+..++... +...+++.+.++|||-+|.++-.. ||.++.-+..+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN---wEhl~~ifdHL 442 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN---WEHLLHIFDHL 442 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh---HHHHHHHHHHh
Confidence 00 2346799999998887766521 122368899999999999886432 55555444444
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0043 Score=63.89 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhcccCCCcccccccCCcccchhhHhhhhHHHHHHHhcccEEEEcCCCC
Q 000324 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (1665)
Q Consensus 1565 ~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gI~~~H~~m~ 1644 (1665)
..+......++++||||+++.+++.++..|.. ...++.++||+++
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~ 63 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDGS 63 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCCC
Confidence 33434433577899999999999999977731 3567999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEC
Q 000324 1645 KTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1645 ~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+.+|..+.+.|++|..+||||
T Consensus 64 ~~~~~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 64 QEEREEVLKDFREGEIVVLVA 84 (131)
T ss_pred HHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999999999987
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0067 Score=67.89 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=92.4
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~Lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
+-|+|+---+.+--.+++.|.++....+.. +.|.+...-+|.|||.|. +|++..+.... ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---------SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---------CcEEEEEcC
Confidence 457776655544447999999999988864 578999999999999876 67776665431 123444455
Q ss_pred cHHHHHHHHHHHHHhhccC-CcEEE--EEECCCcccHh-----------hhccccEEEeChhhHHHHHhhcC------C-
Q 000324 559 MKALVAEVVGNLSNRLQMY-DVKVR--ELSGDQTLTRQ-----------QIEETQIIVTTPEKWDIITRKSG------D- 617 (1665)
Q Consensus 559 ~raLa~q~~~~~~~~~~~~-gi~V~--~ltGd~~~~~~-----------~~~~~~IiV~TPekld~l~r~~~------~- 617 (1665)
++|..|....+..+++.. +-+|. .+.-+...+.. ......|+++|||.+.++.-+.. .
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 689999999999888743 33333 33344444332 12356699999998533321111 0
Q ss_pred ---------CccccceeEEEEecccccc
Q 000324 618 ---------RTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 618 ---------~~~l~~v~liIiDEaH~l~ 636 (1665)
..+++....=|+||+|.+.
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 1233444556888888654
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0026 Score=69.11 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCeEEEEecChhHHHHHHHHHHHHhhhccccccccccCchhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHH
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1665)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v 812 (1665)
++.+|||++|.+..+.+...+....... ++.++.. ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~-----------------------------------~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEK-----------------------------------GIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-E-----------------------------------TSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccc-----------------------------------cceeeec--CcchHHHH
Confidence 5899999999998888877665432111 1122222 35678889
Q ss_pred HHHHhCCCCCeEEecc--ccccccCCCc--eEEEEecccccCCCCC----------------Cc----ccCCHHHHHhhh
Q 000324 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (1665)
Q Consensus 813 ~~~F~~g~i~VLVaT~--tla~GVdlP~--v~vVI~~t~~yd~~~g----------------~~----~~~s~~~~~Qr~ 868 (1665)
.+.|+.+.-.||+|+. .+..|||+|+ .+.||-...||-++.. .+ .+.....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999998 9999999996 4344444455543321 01 112345677999
Q ss_pred cccCCCCCCCceEEEEEeCCCcHHHHHHhh
Q 000324 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (1665)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (1665)
||+-|.. +..|..+++-..-....|.+.+
T Consensus 132 GR~iR~~-~D~g~i~llD~R~~~~~y~~~l 160 (167)
T PF13307_consen 132 GRLIRSE-DDYGVIILLDSRFLSKRYGKYL 160 (167)
T ss_dssp HCC--ST-T-EEEEEEESGGGGGHHHHHH-
T ss_pred Ccceecc-CCcEEEEEEcCccccchhhhcC
Confidence 9999975 3467666665543334454443
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0047 Score=81.95 Aligned_cols=83 Identities=17% Similarity=0.055 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHH---cC-----CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLY---NT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll---~~-----~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~ 1412 (1665)
.+++-|.+....++ .+ +..++|-||||+|||++|++|++..... .+. ++||=+.|+.|-+|....=--
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQeQL~~kDlP 100 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQEQLVSKDLP 100 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHHHHHhhhhh
Confidence 68999999776665 44 3568899999999999999999876554 234 899999999999998643221
Q ss_pred HhcCCC--CcEEEEEeC
Q 000324 1413 KFGQGL--GMRVVELTG 1427 (1665)
Q Consensus 1413 ~~~~~~--~i~v~~l~G 1427 (1665)
.+.+.+ .++++.+.|
T Consensus 101 ~l~~~l~~~~~~~llKG 117 (697)
T PRK11747 101 LLLKISGLDFKFTLAKG 117 (697)
T ss_pred HHHHHcCCCceEEEEcC
Confidence 333322 355555543
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.02 Score=66.52 Aligned_cols=162 Identities=20% Similarity=0.209 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHc---------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~---------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
.++..|-+++-...+ .+.-.+++=.||.||.....-.|+.+|.+. .. |+|+|..+..|-.+..++|+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHH
Confidence 456666666544321 233478888999999988878888888873 22 79999999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhh---hccc-----cC--CCccEEEeecccccCCCCc
Q 000324 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRK-----YV--QQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1412 ~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~-----~l--~~v~llViDEaH~l~~~~g 1481 (1665)
-++.. .+.+..+..-...+...+ ...||.+|-..|..-.+.. ..|. .+ ..=.+||+||||...+..+
T Consensus 113 -DIG~~-~i~v~~l~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 113 -DIGAD-NIPVHPLNKFKYGDIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred -HhCCC-cccceechhhccCcCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 45432 333333332111111111 2359999988887664310 1110 01 1236899999998865322
Q ss_pred -----hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1482 -----PVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1482 -----~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
......+. .+..++ ++.|+|..|||-+.
T Consensus 190 ~~~~~sk~g~avl---~LQ~~L-P~ARvvY~SATgas 222 (303)
T PF13872_consen 190 GSKKPSKTGIAVL---ELQNRL-PNARVVYASATGAS 222 (303)
T ss_pred cCccccHHHHHHH---HHHHhC-CCCcEEEecccccC
Confidence 22222332 333344 46789999999653
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0044 Score=80.14 Aligned_cols=138 Identities=15% Similarity=0.217 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHH---HHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~---ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++.+|..-++. +|+.+=|-|+.-.-|-|||+-- +.+|.|+.... +-| --||||||--+.+ +.-+|+ +|+
T Consensus 614 GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWG--PHLIVVpTsviLn-WEMElK-Rwc 688 (1958)
T KOG0391|consen 614 GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWG--PHLIVVPTSVILN-WEMELK-RWC 688 (1958)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCC--CceEEeechhhhh-hhHHHh-hhC
Confidence 3678889887765 6777888999999999999875 45555665532 333 4688899965544 444555 665
Q ss_pred CCCCcEEEEEeCCCccc---hhccCCC---cEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHH
Q 000324 1416 QGLGMRVVELTGETAMD---LKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~---~~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~ 1488 (1665)
. |++|..++|..... .+-+.++ ||-|++...+..-.+.++. .+..++|+||+|.|-++....|+.++
T Consensus 689 P--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkr----krWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 689 P--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKR----KRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred C--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHh----hccceeehhhhhhhcchhHHHHHHHh
Confidence 4 78999999975443 2222222 8888887766544433332 25679999999999876655555554
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.017 Score=74.68 Aligned_cols=154 Identities=13% Similarity=0.168 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHh-hcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK-ASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1331 ~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~-~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
.+..++.... -.+.|+.|+..++.+ .-.+|.++.|+|||.+..-.+ ..+.. .+..+.+++++.+||---+..+.+.
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALALKS-NFSLITGGPGTGKTTTVARLL-LALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHH-HHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 3445544222 237999999999885 448999999999998753322 22222 1111124899999998887776666
Q ss_pred HHHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHh---hh-ccccCCCccEEEeecccccCCCCchhHH
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1410 ~~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
....+... +.. . + ....-.+-..|-.++...... +. ...+.-.+++|||||+=++..
T Consensus 213 ~~~~~~~l-~~~-----~----~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~------- 273 (586)
T TIGR01447 213 LRKAVKNL-AAA-----E----A--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL------- 273 (586)
T ss_pred HHhhhccc-ccc-----h----h--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-------
Confidence 55332211 100 0 0 000001113343333322110 00 112234689999999998851
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1486 VIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
.-|..+...++...|+|++.=
T Consensus 274 ---~l~~~ll~al~~~~rlIlvGD 294 (586)
T TIGR01447 274 ---PLMAKLLKALPPNTKLILLGD 294 (586)
T ss_pred ---HHHHHHHHhcCCCCEEEEECC
Confidence 233444455677899998873
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=75.21 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=55.5
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHH
Q 000324 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1665)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (1665)
..+...|..-....+.|+.++..++.+ .-++|.|++|+|||.+.. .++..+..... ....+|++++||---|
T Consensus 141 ~~l~~lf~~~~~~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~-~ll~~l~~~~~------~~~~~i~l~APTgkAA 212 (615)
T PRK10875 141 QTLDALFGPVTDEVDWQKVAAAVALTR-RISVISGGPGTGKTTTVA-KLLAALIQLAD------GERCRIRLAAPTGKAA 212 (615)
T ss_pred HHHHHhcCcCCCCCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHH-HHHHHHHHhcC------CCCcEEEEECCcHHHH
Confidence 344444521112458999999988765 458999999999998652 22333322110 0235788999999999
Q ss_pred HHHHHHHHHhhcc
Q 000324 564 AEVVGNLSNRLQM 576 (1665)
Q Consensus 564 ~q~~~~~~~~~~~ 576 (1665)
..+.+........
T Consensus 213 ~rL~e~~~~~~~~ 225 (615)
T PRK10875 213 ARLTESLGKALRQ 225 (615)
T ss_pred HHHHHHHHhhhhc
Confidence 9888877665443
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.028 Score=71.09 Aligned_cols=234 Identities=16% Similarity=0.242 Sum_probs=130.8
Q ss_pred CCHHHHHHHH---HHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1342 FNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1342 ~~~iQ~qa~~---~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
+.++|.--++ .+|+.+=|.|+.-.-|-|||+-. ++.+..|.+....+ .-|||||.--| +-+.+++. +|++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTl-eNWlrEf~-kwCP-- 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTL-ENWLREFA-KWCP-- 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhH-HHHHHHHH-HhCC--
Confidence 5566654444 45566667899999999999764 44455555533333 57889998665 45666666 6665
Q ss_pred CcEEEEEeCCCccchh----cc---CCCcEEEEChhhHHH------HHHhhhccccCCCccEEEeecccccCCCCchhHH
Q 000324 1419 GMRVVELTGETAMDLK----LL---EKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~----~l---~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e 1485 (1665)
.++|..++|......+ +- ...+|+|+|-.-... ++++ ++++++|+||.|++-......|.
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~-------~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKN-------QKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHh-------ccccEEEecchhhhhccchHHHH
Confidence 5789999997654422 11 144899999765421 2222 46889999999999765544444
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHhcccCCcEEecCCCC-------CccceEEEEe-ecccchhhHHH
Q 000324 1486 VIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-------RPVPLEIHIQ-GVDITNFEARM 1556 (1665)
Q Consensus 1486 ~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~~~-------rpv~l~i~i~-~~~~~~~~~~~ 1556 (1665)
.+++ .+.+.|+++...+|.| -.++...|.-.-..+|.-.-.. +..+ .-.+. ..-....-.+.
T Consensus 546 ~LM~--------I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~-d~d~e~~~l~qerIsrA 616 (941)
T KOG0389|consen 546 HLMS--------INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS-DGDIENALLSQERISRA 616 (941)
T ss_pred Hhcc--------ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc-cchhhHHHHHHHHHHHH
Confidence 4332 2456666555555555 3344433322112222211000 0000 00000 00001122333
Q ss_pred HhcChh-----HHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHHHhc
Q 000324 1557 QAMTKP-----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYS 1598 (1665)
Q Consensus 1557 ~~~~k~-----~~~~i~~~l~~~~~~IVFv~sr~~a~~la~~L~~~~ 1598 (1665)
..|.+| ....++..+-+..+.|.||.=.+.=+.++..++...
T Consensus 617 K~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~ 663 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELY 663 (941)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHH
Confidence 344433 234455565666779999987777777777776544
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0093 Score=61.66 Aligned_cols=119 Identities=19% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I-~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~ 1435 (1665)
+..++|.+|+|+|||.+...-+-...........+.++++ +|...-.......+...++.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 68 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--------------- 68 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---------------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---------------
Confidence 4458999999999999876554433322110112244443 443332445555555455432111
Q ss_pred cCCCcEEEEChhhHHHHH-HhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1436 LEKGQIIISTPEKWDALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~-r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
-.++..+...+ +.+.. ....+|||||+|.+. . ..++..++.+.. ..++++|+.+.
T Consensus 69 -------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEES
T ss_pred -------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEEC
Confidence 11333332222 22221 123799999999974 1 335555555543 45666555443
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0041 Score=74.77 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc
Q 000324 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~ 575 (1665)
||+-|.+++.. .+.+++|.|+.|||||.+...-++..+..... +..+|+++++|++.|.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 58889999986 45679999999999999988888877765421 244799999999999999999998765
Q ss_pred cCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhc-CCCccccceeEEEEeccc
Q 000324 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKS-GDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 576 ~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~-~~~~~l~~v~liIiDEaH 633 (1665)
..+... ..+..+.........+.|+|-..| ..+++.. ...... -.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~--~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGID--PNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSH--TTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhhcc--ccceeecchh
Confidence 321000 000011111122456788898875 3344433 211111 2355666665
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.021 Score=73.88 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC
Q 000324 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~ 577 (1665)
..|+.++..++.+ ..++|+|+.|+|||.+..- ++..+....... .+.+|++.+||---|..+.+........+
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~-----~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVAR-LLLALVKQSPKQ-----GKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHH-HHHHHHHhcccc-----CCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 7999999998876 5699999999999986532 233332211100 12479999999988888777766543322
Q ss_pred CcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhh---c-CCCccccceeEEEEecccccccCCchHHHHHHHHHHHH
Q 000324 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK---S-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1665)
Q Consensus 578 gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~---~-~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (1665)
+.. ........+-..|-.+|-..... . ......-.+++|||||+-++. .+.+..++.
T Consensus 221 ~~~-----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd---~~l~~~ll~----- 281 (586)
T TIGR01447 221 AAA-----------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD---LPLMAKLLK----- 281 (586)
T ss_pred ccc-----------hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC---HHHHHHHHH-----
Confidence 211 00000111113333332111000 0 000112347999999999875 222333332
Q ss_pred HhhccCCeeEEEEc
Q 000324 654 IETTKEHIRLVGLS 667 (1665)
Q Consensus 654 ~~~~~~~~riV~lS 667 (1665)
..+...|+|++.
T Consensus 282 --al~~~~rlIlvG 293 (586)
T TIGR01447 282 --ALPPNTKLILLG 293 (586)
T ss_pred --hcCCCCEEEEEC
Confidence 245678888775
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.018 Score=66.74 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHc---------CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 494 TQLNRVQSRVYKSALS---------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~---------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
..|+..|-+++--+.+ .+.-.++--.||.||.-...-.|+..+.+. ..|.|++...-.|-.
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----------r~r~vwvS~s~dL~~ 105 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----------RKRAVWVSVSNDLKY 105 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----------CCceEEEECChhhhh
Confidence 3678889888765532 133578888999999877766777777664 336999999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhc-CCCccc---------cceeEEEEecccc
Q 000324 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYT---------QLVKLLIIDEIHL 634 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l---------~~v~liIiDEaH~ 634 (1665)
...++|+..... .+.+..+..- .......-...|+++|.-.+-.-.++. .....+ ..=.+||+||+|.
T Consensus 106 Da~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 106 DAERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 999999875432 3444433321 101111124469999988653332211 111111 1125899999998
Q ss_pred cccC-C----chHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 635 LHDN-R----GPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 635 l~d~-r----g~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
..+. . +......+..+. ..-++.|+|.+|||-.
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ----~~LP~ARvvY~SATga 221 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQ----NRLPNARVVYASATGA 221 (303)
T ss_pred cCCCCccCccccHHHHHHHHHH----HhCCCCcEEEeccccc
Confidence 8652 2 122222232222 2346789999999953
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.017 Score=78.12 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
.|++-|.+++..++.+++.++|.|+.|+|||++ +-++...+.. .+.+++.++||--.|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 799999999999998777789999999999986 3444444433 245899999998766544
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.02 Score=76.59 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
..|++-|.+++..++.++..++|.|+.|+|||.+. -++...+... +.++++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~----------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA----------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC----------CCeEEEEeCcHHHHHHHH
Confidence 36899999999999887777899999999999764 3344444332 457999999977666543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0068 Score=74.27 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=59.8
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccCC
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~~ 1438 (1665)
-++|.+..|||||+++.-.+.. +....... +++++++..+|.......+...... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNP--------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhccccCC--ceEEEEecchHHHHHHHHHhhhccc--------------------ch
Confidence 4789999999999998554443 32112233 8999999999999888877643200 00
Q ss_pred CcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~ 1478 (1665)
....+..|..+..-.. .........++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 1122333333322111 1233457899999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0069 Score=74.20 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=59.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.++|.|..|||||++++-.+ ..+... ..+.+++|+++..+|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~-~~l~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLA-KELQNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHH-HHhhcc--------ccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 57899999999999885443 333111 12457899999999999888888664300
Q ss_pred hhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc
Q 000324 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
......+..|..+ +............+++|||||||++.+
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0111233333332 110001123456789999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0092 Score=79.57 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll---~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
...+++.|.+....+. .++..+++.||||+|||++|++|++...... +. +++|.++|+.|.+|..++..
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~--~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GK--KVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CC--cEEEECCCHHHHHHHHHhhc
Confidence 5689999999887654 4566699999999999999999999877662 23 89999999999999887765
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.028 Score=72.95 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=85.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHH
Q 000324 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (1665)
Q Consensus 1331 ~~~~l~~~f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~ 1410 (1665)
.+..+|..-....++|+.|+-..+..+ -.+|.+++|+|||.+..-. +..+.........++++.+||.--+....+..
T Consensus 142 ~l~~lf~~~~~~~d~Qk~Av~~a~~~~-~~vItGgpGTGKTt~v~~l-l~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 142 TLDALFGPVTDEVDWQKVAAAVALTRR-ISVISGGPGTGKTTTVAKL-LAALIQLADGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred HHHHhcCcCCCCCHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHH-HHHHHHhcCCCCcEEEEECCcHHHHHHHHHHH
Confidence 344555411123589999999888754 4899999999999875322 22222211112237889999988888777766
Q ss_pred HHHhcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHh---hh-ccccCCCccEEEeecccccCCCCchhHHH
Q 000324 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (1665)
Q Consensus 1411 ~~~~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~llViDEaH~l~~~~g~~~e~ 1486 (1665)
....... +. .. +.+ ..-..-..|-.++...... +. ...+.-..+++||||+-++.
T Consensus 220 ~~~~~~~-~~-----~~----~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--------- 278 (615)
T PRK10875 220 GKALRQL-PL-----TD----EQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--------- 278 (615)
T ss_pred Hhhhhcc-cc-----ch----hhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc---------
Confidence 5333211 10 00 000 0001112333333221110 00 11223457999999999984
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcc
Q 000324 1487 IVSRMRYIASQVENKIRIVALST 1509 (1665)
Q Consensus 1487 ~~srl~~i~~~~~~~~riI~lSA 1509 (1665)
+.-|..+...+++..|+|++.=
T Consensus 279 -~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 279 -LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred -HHHHHHHHHhcccCCEEEEecc
Confidence 2334445556688899999873
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0099 Score=61.47 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHH
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQ 534 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~ 534 (1665)
++..++|+||+|+|||.++...+-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999877554443
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.2 Score=66.91 Aligned_cols=230 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred HhhhccccEEEeChhhH--HHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
.+......|+++||.-+ |.|+.+.. +..|..|||||||.+. |...+..+.++.+ +..+..-|.||||.
T Consensus 2 ~~ly~~ggi~~~T~rIl~~DlL~~ri~----~~~itgiiv~~Ahr~~---~~~~eaFI~rlyr---~~n~~gfIkafSds 71 (814)
T TIGR00596 2 EKVYLEGGIFSITSRILVVDLLTGIIP----PELITGILVLRADRII---ESSQEAFILRLYR---QKNKTGFIKAFSDN 71 (814)
T ss_pred hhHhhcCCEEEEechhhHhHHhcCCCC----HHHccEEEEeeccccc---ccccHHHHHHHHH---HhCCCcceEEecCC
Q ss_pred CCCh----HHHHHHHhccccCceEEecC-------CCccccceEEEEeeecCchhHHHHHHHHHH---------------
Q 000324 670 LPNY----EDVALFLRVNLEKGLFYFDN-------SYRPVPLSQQYIGIQVKKPLQRFQLMNDLC--------------- 723 (1665)
Q Consensus 670 l~n~----~dv~~~l~~~~~~~~~~f~~-------~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~--------------- 723 (1665)
.... ..+.+-+..=....++.+.. ...+.+.....+.++........+.....|
T Consensus 72 P~~~~~g~~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l~eLkr~n~~l 151 (814)
T TIGR00596 72 PEAFTMGFSPLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIAELKRKNPEL 151 (814)
T ss_pred CcccccchHHHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q ss_pred -----------------------------------------------------------HHHHHHH--------------
Q 000324 724 -----------------------------------------------------------YEKVVAV-------------- 730 (1665)
Q Consensus 724 -----------------------------------------------------------~~~i~~~-------------- 730 (1665)
|..+...
T Consensus 152 d~~dl~~en~l~~~F~~~i~~qL~~~wh~~~~~tkqlv~Dl~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~ 231 (814)
T TIGR00596 152 DMEDWNLENALTKSFDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSE 231 (814)
T ss_pred CHHHhHHhhhhhhhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccC
Q ss_pred -------------------------------------------------------------hCCCeEEEEecChhHHHHH
Q 000324 731 -------------------------------------------------------------AGKHQVLIFVHSRKETAKT 749 (1665)
Q Consensus 731 -------------------------------------------------------------~~~~~vLVFv~sr~~~~~~ 749 (1665)
.+.+++||||+.++.|..+
T Consensus 232 S~Wl~~daa~~lf~~ak~Rvy~~~~~~~~~~e~~lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL 311 (814)
T TIGR00596 232 SPWLLLDAAQLIFSYARQRVYYEGEGPNMKNEPVLEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQL 311 (814)
T ss_pred CcchhhHHHHHHHHHHHHHHhccccccccccccCcccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHH
Q ss_pred HHHHHH-----------------------------------------------------------HhhhccccccccccC
Q 000324 750 ARAIRD-----------------------------------------------------------TALENDTLGRFLKED 770 (1665)
Q Consensus 750 a~~L~~-----------------------------------------------------------~~~~~~~l~~~~~~~ 770 (1665)
.+.|.. ..
T Consensus 312 ~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr------------- 378 (814)
T TIGR00596 312 RDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLAKEVQSQDTFPENASSNVNKTFRKEQVPTKRRR------------- 378 (814)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhhHhhhhccccccccccccccccccccccccccc-------------
Q ss_pred chhHHHHHhhhhccccchhhhhcCCcEEEecCCCCHHHHHHHHHHHhCCCCC---------eE-----------------
Q 000324 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---------VL----------------- 824 (1665)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagm~~~dR~~v~~~F~~g~i~---------VL----------------- 824 (1665)
+.||++.. ...|+.|... ++
T Consensus 379 ------------------------------~rG~s~~~----~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (814)
T TIGR00596 379 ------------------------------VRGGSEVA----VEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINA 424 (814)
T ss_pred ------------------------------cccchhHH----Hhhhcccccccccccchhhhhhhhhhhhcccccccccc
Q ss_pred ------EeccccccccCCCc----------------------e----------EEEEecccccCCCCCCcccCCHHHHHh
Q 000324 825 ------VSTATLAWGVNLPA----------------------H----------TVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (1665)
Q Consensus 825 ------VaT~tla~GVdlP~----------------------v----------~vVI~~t~~yd~~~g~~~~~s~~~~~Q 866 (1665)
|+|+....|+|+|. + ++||. |+|.- .++-
T Consensus 425 ~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VIm----YEP~~---------sfIR 491 (814)
T TIGR00596 425 ANDSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIM----YEPDI---------SFIR 491 (814)
T ss_pred ccccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEE----ECCCh---------HHHH
Q ss_pred hhc--ccCCCCCCCceEEEEEeCCCcHHH
Q 000324 867 MLG--RAGRPQYDSYGEGIIITGHSELRY 893 (1665)
Q Consensus 867 r~G--RAGR~g~d~~G~~iil~~~~~~~~ 893 (1665)
++= ||||+| ..|.+|+++..+..+.
T Consensus 492 ~IEvyra~r~~--r~~rVyfL~y~~S~EE 518 (814)
T TIGR00596 492 QLEVYKASRPL--RPLRVYFLYYGGSIEE 518 (814)
T ss_pred HHHHHHccCCC--CCcEEEEEEECCcHHH
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.028 Score=74.92 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~ 567 (1665)
..+++-|.+++..+..+ ..++|.|+.|+|||.+. -+++..+.... ....++.++||-..|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l-~~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTIT-RAIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHH-HHHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 37899999999998654 57999999999999865 34444443321 0146888999988876543
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.023 Score=72.92 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhcC--C--------C-----------CCC----C
Q 000324 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNR--N--------D-----------DGS----F 546 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~--~--------~-----------~g~----~ 546 (1665)
++++.|...+..++. ...|.++-.|||+|||+..+-..|.-..... . . .|. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 568889877766543 4557899999999999865443332221111 0 0 000 0
Q ss_pred C------CCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 547 N------HSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 547 ~------~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
. ...++|.|-.-|-+-..|+++++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 13578888888888888999888764
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.023 Score=59.26 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (1665)
...+++.||+|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999975543
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=63.78 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=73.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
..++++||||+|||+++.-.+.+........ | ....++.+=+.|.-+.++...+.+.+ |+.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g----~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-S----LNIKIITIDNYRIGAKKQIQTYGDIM---GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-C----CeEEEEeccCccHHHHHHHHHHhhcC---CcceE---------
Confidence 4689999999999987644333222211000 1 12334455566777777766665543 44332
Q ss_pred HhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCC-eeEEEEcccC
Q 000324 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~-~riV~lSATl 670 (1665)
.+-++..+.....+ +...++||||++...+.+ .. -+.++...+.....+ -.++.+|||.
T Consensus 238 ---------~~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 238 ---------AIESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ---------eeCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 12234444332222 245799999999987531 11 144444444433333 4678899997
Q ss_pred CChHHHHHHHh
Q 000324 671 PNYEDVALFLR 681 (1665)
Q Consensus 671 ~n~~dv~~~l~ 681 (1665)
. ..++.+.+.
T Consensus 298 ~-~~~~~~~~~ 307 (388)
T PRK12723 298 K-TSDVKEIFH 307 (388)
T ss_pred C-HHHHHHHHH
Confidence 5 566665554
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.073 Score=69.26 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=25.6
Q ss_pred cE-EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 513 nv-lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
++ +|+||||+|||.+.-.. ++.+....... ....+.++||=-
T Consensus 782 nvLYIyG~PGTGKTATVK~V-LrELqeeaeqk---~lp~f~vVYINC 824 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV-IQLLQHKTKQK---LLPSFNVFEING 824 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHHHhhc---cCCCceEEEEeC
Confidence 45 59999999999987553 45553321111 123467888844
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.11 Score=64.05 Aligned_cols=145 Identities=22% Similarity=0.250 Sum_probs=75.1
Q ss_pred EccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhc-cCCcEEEEEECCCc------
Q 000324 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVRELSGDQT------ 589 (1665)
Q Consensus 517 ~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~-~~gi~V~~ltGd~~------ 589 (1665)
.+.||||||++..-.||....++. ..-++.+..-....-....|..-.. .+=.+-....+|..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy----------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY----------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch----------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 468999999988888888776542 2355656555554444444432111 00000011112211
Q ss_pred --ccHhhhccccEEEeChhhH-HHHHhhcCC---CccccceeE-EEEecccccccC-C---------chHHHHHHHHHHH
Q 000324 590 --LTRQQIEETQIIVTTPEKW-DIITRKSGD---RTYTQLVKL-LIIDEIHLLHDN-R---------GPVLESIVARTVR 652 (1665)
Q Consensus 590 --~~~~~~~~~~IiV~TPekl-d~l~r~~~~---~~~l~~v~l-iIiDEaH~l~d~-r---------g~~le~iv~r~~~ 652 (1665)
++. ......|.++|...+ ..++|..-. ...+.+.++ ++-||+|+|... . -..+++.|....
T Consensus 73 n~fse-hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~- 150 (812)
T COG3421 73 NNFSE-HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL- 150 (812)
T ss_pred cccCc-cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-
Confidence 111 223567999999986 334443321 223444455 466999999541 1 122344333222
Q ss_pred HHhhccCCeeEEEEcccCCChHHH
Q 000324 653 QIETTKEHIRLVGLSATLPNYEDV 676 (1665)
Q Consensus 653 ~~~~~~~~~riV~lSATl~n~~dv 676 (1665)
+ ..++--++.+|||+|.-.+|
T Consensus 151 --~-~nkd~~~lef~at~~k~k~v 171 (812)
T COG3421 151 --E-QNKDNLLLEFSATIPKEKSV 171 (812)
T ss_pred --h-cCCCceeehhhhcCCccccH
Confidence 2 23445566789999853344
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.042 Score=73.22 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
..+++-|.+|+..+... ..+++.++.|+|||.+. -+++..+....... ++++++||---+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~--~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTIT-RAIIELAEELGGLL--PVGLAAPTGRAAKR 383 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHH-HHHHHHHHHcCCCc--eEEEEeCchHHHHH
Confidence 47899999999999764 46899999999999875 34555555421112 78889999777764
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.029 Score=71.78 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=102.5
Q ss_pred CCCCeEEeccccccccCCCceEEEEecccccCCCCCCcccCCHHHHHhhhcccCCCCCCCceEEEEEeCCCcHHHHHHhh
Q 000324 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (1665)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~t~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (1665)
...+.|++-.+|-.|-|=|+|-.|.+ ..+.. |..+=+|-+||.-|---+..|.-+.= .-+...++.++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV~~--~~~~~n~L~vl 549 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERVTK--DFDFPNELTVL 549 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeeccccceecc--cccccceEEEE
Confidence 45899999999999999999999998 55444 77888999999999766666655431 00111111111
Q ss_pred cCCCccccchhHhhHHHHHHHHHhcccc--ChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000324 899 NQQLPIESQFVSKLADQLNAEIVLGTVQ--NAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (1665)
Q Consensus 899 ~~~~piES~l~~~l~d~lnaeI~~g~i~--~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (1665)
-.. .|-.|.+.|.+-++.+-..+... ...+..... .+ .++.+.+. .+...-.
T Consensus 550 v~~--sek~Fv~~LqkEI~~~s~i~~~~~~~~e~~~~~i----------~~-e~~~v~~e-------------~~~~~~f 603 (985)
T COG3587 550 VNE--SEKDFVKALQKEINDESFIKQGFAKDEEELSKLI----------LK-ERGKVLPE-------------TLEKLLF 603 (985)
T ss_pred ecc--cHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHH----------hh-ccccccHH-------------HHHHHHh
Confidence 110 13344555555555543332221 111221111 11 11222211 0111112
Q ss_pred HHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCC--CCcCChhHHHHHHH
Q 000324 977 TILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFK--YVTVRQDEKMELAK 1054 (1665)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~--~i~~R~~E~~~l~~ 1054 (1665)
..|.+...+..++..-.=.-+.++..-+.+|-.+..+.-+.+. .+. .-..+..+.+=+ .|.+|.+-.++++.
T Consensus 604 ~dl~~~d~l~~n~n~f~~~~~~~d~lk~e~~~~f~~~~~~~~~---~l~---~~~~I~Na~~~k~~~i~~r~~n~kefk~ 677 (985)
T COG3587 604 GDLIKDDYLDLNENEFAEKEPELDKLKDELYEAFEKIKDLIKD---RLI---GADRIRNAKERKKEKIKIRKENFKEFKA 677 (985)
T ss_pred hhhcccccccccchhhccccchhhhcCHHHHHHhHHHHHHHHh---hhh---hhhhhccCCcccccceehhhhhHHHHHH
Confidence 3333334332221100112356788888888877777666542 111 112445555544 45667777778887
Q ss_pred HhccC
Q 000324 1055 LLDRV 1059 (1665)
Q Consensus 1055 l~~~~ 1059 (1665)
|.+.+
T Consensus 678 LW~~i 682 (985)
T COG3587 678 LWEKI 682 (985)
T ss_pred HHHHh
Confidence 77653
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.078 Score=62.22 Aligned_cols=64 Identities=25% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHH
Q 000324 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa 563 (1665)
|++-.|..|.-++..++..+ +=|.+.++.|||||+.|+-+.+.+....+. ..|+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--------y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--------YRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--------hceEEEecCCcCcc
Confidence 78888999999999877653 345678999999999999888877665422 33788888876654
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.016 Score=69.68 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcC
Q 000324 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1342 ~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~ 1416 (1665)
+|+-|.+++.. ...+++|.|+.|||||.+...-++..+.... -..-++|++++|+..+.++..++...++.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 3557999999999999998887777776641 11228999999999999999999876653
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.099 Score=58.28 Aligned_cols=130 Identities=19% Similarity=0.164 Sum_probs=70.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.++++||||+|||+...--..+...+. .+...+.+=..|.=|.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~---- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES---- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch----
Confidence 478899999999886654444433321 12334445567888888888887765 44433211000
Q ss_pred hhhccccEEEeChhh-HHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 593 QQIEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 593 ~~~~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
.|.. +....++. ..+++++|+||-+-+. +.-...+..+........+.--++.+|||..
T Consensus 67 -----------~~~~~~~~~l~~~----~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 -----------DPAEIAREALEKF----RKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp -----------CHHHHHHHHHHHH----HHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred -----------hhHHHHHHHHHHH----hhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 1211 11111111 1234689999988643 3334444555444444556667788999986
Q ss_pred ChHHHHHH
Q 000324 672 NYEDVALF 679 (1665)
Q Consensus 672 n~~dv~~~ 679 (1665)
. +++...
T Consensus 127 ~-~~~~~~ 133 (196)
T PF00448_consen 127 Q-EDLEQA 133 (196)
T ss_dssp G-HHHHHH
T ss_pred h-HHHHHH
Confidence 4 444433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.073 Score=61.39 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
+..++++.+|+|+|||-.+. +|...+.. .+ ..++.++..+|..++...
T Consensus 100 ~~~~l~l~G~~GtGKThLa~-AIa~~l~~---~g--~~v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAA-AIGNRLLA---KG--RSVIVVTVPDVMSRLHES 147 (248)
T ss_pred cCCeEEEECCCCCCHHHHHH-HHHHHHHH---cC--CCeEEEEHHHHHHHHHHH
Confidence 34579999999999998874 44445544 12 334445666777765543
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.062 Score=61.96 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
..+++++||+|+|||..+ .+|.+.+... +..++| .+..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~----------g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK----------GRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc----------CCCeEE-EEHHHHHHHHHHH
Confidence 457999999999999876 3455555432 223444 4555666665443
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.024 Score=69.67 Aligned_cols=109 Identities=23% Similarity=0.366 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH--H
Q 000324 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV--V 567 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~--~ 567 (1665)
+||+-|++++..++ ....+++|.||-|+|||.+.- ++...+.. .+..++++|||-..|..+ -
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhccCC
Confidence 47899999988773 345689999999999997552 22333221 244799999998877665 2
Q ss_pred HHHHHhhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc
Q 000324 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (1665)
Q Consensus 568 ~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d 637 (1665)
..+...| ++.+.. .. ... +.+++ .......+..+++|||||+=+++.
T Consensus 70 ~T~hs~f---~i~~~~----~~-------~~~---~~~~~------~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 70 RTIHSFF---GIPINN----NE-------KSQ---CKISK------NSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cchHHhc---Cccccc----cc-------ccc---ccccc------cchhhhhhhhheeeecccccchhH
Confidence 2333322 222110 00 000 12221 111223567789999999998853
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.097 Score=71.09 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+++-|.+|+..++.+++-++|.++.|+|||.+ +-++...+.. .+. +++.++||---+.... ...|
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~--~V~~~ApTGkAA~~L~--------e~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGY--EVRGAALSGIAAENLE--------GGSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCC--eEEEecCcHHHHHHHh--------hccC
Confidence 4699999999999998777789999999999987 3445555554 233 8999999976554322 1112
Q ss_pred cEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhh-ccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
+.. .|..+| ...|. ....+...++|||||+-++... .+..++. . ..
T Consensus 412 i~a---------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~----~--a~ 458 (988)
T PRK13889 412 IAS---------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLS----H--AA 458 (988)
T ss_pred cch---------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCHH---HHHHHHH----h--hh
Confidence 211 132222 22332 2334667899999999998632 1222221 1 11
Q ss_pred CCCCeEEEEccc
Q 000324 1499 ENKIRIVALSTS 1510 (1665)
Q Consensus 1499 ~~~~riI~lSAT 1510 (1665)
....++|++.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 456788887643
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.097 Score=71.45 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
..|++-|.+++..+..++.-++|.|+.|+|||++.- ++...+.. .+.+++-++||-.-|..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHH
Confidence 479999999999887667778999999999997543 34444433 256899999997777655
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.018 Score=71.23 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
..+++-|++|+....+..+-.++.+|+|+|||.+-..-|.+.+.+ +. ++|+.+||.+-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 578999999999999887778999999999999988888888777 33 99999999999999988644
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.095 Score=70.22 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+++-|.+|+..++.++.-++|.+++|+|||.+.- ++...+.. .+. ++++++||---+....+ ..|
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~--~g~--~V~~~ApTg~Aa~~L~~--------~~g 417 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA--AGY--RVIGAALSGKAAEGLQA--------ESG 417 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh--CCC--eEEEEeCcHHHHHHHHh--------ccC
Confidence 468999999999998876668999999999998753 34444444 233 89999999665544321 112
Q ss_pred cEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhh-ccccCCCccEEEeecccccC
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1420 i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.. .|-.+|. ..|. ....+...++|||||+-++.
T Consensus 418 ~~a---------------------~Ti~~~~---~~~~~~~~~~~~~~llIvDEasMv~ 452 (744)
T TIGR02768 418 IES---------------------RTLASLE---YAWANGRDLLSDKDVLVIDEAGMVG 452 (744)
T ss_pred Cce---------------------eeHHHHH---hhhccCcccCCCCcEEEEECcccCC
Confidence 211 1322321 1121 22346688999999999996
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.048 Score=63.91 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1338 GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1338 ~f~~~~~iQ~qa~~~ll~~~-dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
|+.--|-.|.-|+..++..+ +=|.+.++.|||||+.|+.|.+......+.-. ++|+--|+..+.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--KIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--eEEEecCCcCcc
Confidence 46677888999999998744 45678999999999999988887766644333 788877776554
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.35 Score=58.57 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
+..+.+.||||.|||+...--+.+..+.... .+..+|=+=..|.=|.++...+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~--------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL--------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHh---CCce---------
Confidence 6779999999999987543333333322211 12233434456777788777776654 3333
Q ss_pred cHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccC
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl 670 (1665)
.+|-+|.-|+.-.. .+++.++|.||=+-+ ++.=...++.+........+--..+.||||.
T Consensus 264 ---------~vv~~~~el~~ai~------~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 264 ---------EVVYSPKELAEAIE------ALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred ---------EEecCHHHHHHHHH------HhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 34555654532221 345568888887743 3333334444444444444445667899995
Q ss_pred CChHHHHHHHhccccCceEEecCCCccccceEEEE
Q 000324 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (1665)
Q Consensus 671 ~n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (1665)
.++|+..-+. .|+.+|+...++
T Consensus 324 -K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 324 -KYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred -chHHHHHHHH------------HhccCCcceeEE
Confidence 6677766654 345666665544
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.12 Score=60.00 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=19.4
Q ss_pred HcCCCcEEEEccCCCchHHHHHHH
Q 000324 508 LSSADNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~ 531 (1665)
+....|++++||+|+|||..+.-.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHH
Confidence 345679999999999999877543
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.092 Score=60.99 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.1
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHH
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAIL 1379 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il 1379 (1665)
..+.|+++++|+|+|||..+.....
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHH
Confidence 4567899999999999998755443
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.28 Score=62.74 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
++|.=.+-++.+++ ...-.++.+|=|.|||.+..+.+...+.. .+.+|+|++|...-++++++++...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHHH
Confidence 34444444444432 23346778999999999887776654432 1458999999999999999998888
Q ss_pred hccCC--------cEEEEEECCCc-c--cH--hhh-ccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCC
Q 000324 574 LQMYD--------VKVRELSGDQT-L--TR--QQI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (1665)
Q Consensus 574 ~~~~g--------i~V~~ltGd~~-~--~~--~~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~r 639 (1665)
+..+| -.+....|+.. . .. ... ..+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH--
Confidence 76433 12222333221 0 00 000 11233332211 1 111113468999999999864
Q ss_pred chHHHHHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHh
Q 000324 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (1665)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv~~~l~ 681 (1665)
+.++.++--+ . ..+.+++.+|.+-. ....-.+|.
T Consensus 309 -~~l~aIlP~l----~--~~~~k~IiISS~~~-~~s~tS~L~ 342 (752)
T PHA03333 309 -GALLSVLPLM----A--VKGTKQIHISSPVD-ADSWISRVG 342 (752)
T ss_pred -HHHHHHHHHH----c--cCCCceEEEeCCCC-cchHHHHhh
Confidence 4455544432 2 24677888888742 333344443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.22 Score=61.16 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=71.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhh-cCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~-~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
..+++++|||+|||.+..--+.+..... ..+..+..+-+=+.|.-+..+...|. ..+|+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a----~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYG----DIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHh----hcCCcceEe------------
Confidence 4688999999999988643332222211 12232233334455555555554444 334444321
Q ss_pred CCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCC-CeEEEEcccCCChH
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK-IRIVALSTSLANAK 1515 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~-~riI~lSATl~n~~ 1515 (1665)
+-++..+...+.. +.+.++||||++.+...+ .. -+.++..+......+ -.++.+|||.. ..
T Consensus 239 ------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~~ 300 (388)
T PRK12723 239 ------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK-TS 300 (388)
T ss_pred ------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-HH
Confidence 2244444443332 357899999999987522 11 255666665544433 46788999975 44
Q ss_pred HHHHHh
Q 000324 1516 DLGEWI 1521 (1665)
Q Consensus 1516 dl~~wl 1521 (1665)
++.+.+
T Consensus 301 ~~~~~~ 306 (388)
T PRK12723 301 DVKEIF 306 (388)
T ss_pred HHHHHH
Confidence 554444
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.052 Score=70.44 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
+..+|.-|.+|+-.++...+-.+|.+=+|+|||......| +.+.. .++ ++|..+-|..-++.+.-.++ .++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--~gk--kVLLtsyThsAVDNILiKL~-~~~--- 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--LGK--KVLLTSYTHSAVDNILIKLK-GFG--- 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--cCC--eEEEEehhhHHHHHHHHHHh-ccC---
Confidence 5689999999999999988888999999999998865443 33332 233 89999999999998888777 333
Q ss_pred CcEEEEEe---------------CCCccc-----hhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1419 GMRVVELT---------------GETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1419 ~i~v~~l~---------------G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.+..+. .+.+.+ .+.+....||.||-=-+...+.. .+.++++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~------~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV------NRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh------ccccCEEEEccccccc
Confidence 2222222 222211 24667778999985444332221 2458999999998764
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.037 Score=73.00 Aligned_cols=90 Identities=26% Similarity=0.251 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++. ...++++|.|..|||||.+..--+...+..... .+-+|++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999886 345678999999999999887666665544311 2447999999999999999999876
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhh
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
++ ...|-|+|-..| ..+.+.
T Consensus 265 lg---------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 265 LG---------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred cC---------------------CCCcEEEeHHHHHHHHHHH
Confidence 42 035788998886 334443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=62.13 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=64.4
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEE
Q 000324 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELS 585 (1665)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~lt 585 (1665)
+..+.+++++||||+|||+.+...+.+...... ..++.++. +.|.-+.++...|.+.+ |+.+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G---------~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~--- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFG---------ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVH--- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCeEEEEecccccccHHHHHHHHHHHc---CCceE---
Confidence 345678999999999999876544443332210 12343333 23444666666666543 33332
Q ss_pred CCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEE
Q 000324 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (1665)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~ 665 (1665)
.+.+++.+.....+ +.+.++|+||.+-... +...+...+..+. ......-+++.
T Consensus 199 ---------------~~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLV 252 (374)
T PRK14722 199 ---------------AVKDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLL 252 (374)
T ss_pred ---------------ecCCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEE
Confidence 23333333222222 2345899999996442 2222322333221 11223456788
Q ss_pred EcccCC
Q 000324 666 LSATLP 671 (1665)
Q Consensus 666 lSATl~ 671 (1665)
+|||..
T Consensus 253 LsAts~ 258 (374)
T PRK14722 253 LNATSH 258 (374)
T ss_pred ecCccC
Confidence 999964
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.18 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q 000324 1357 DDNVLVAAPTGSGKTICSEFA 1377 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~ 1377 (1665)
...+++.+|+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 556999999999999766443
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.036 Score=73.54 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+..+|++++.|+..|.++.+++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999864 3467999999999999998877777775421 123479999999999999999998765
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhh
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
+.. ....+.|+|...| ..++|.
T Consensus 72 ~~~------------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred Ccc------------------cccCcEEEcHHHHHHHHHHH
Confidence 310 0134788999886 344444
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.18 Score=59.00 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH
Q 000324 1341 HFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~---ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~ 1407 (1665)
.+++.|..++.. +...+.|+++++|+|+|||-.+... ...+.. .+. +++|+ +..+|+.+..
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~--~g~--~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAI-GLALIE--NGW--RVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHH-HHHHHH--cCC--ceeee-eHHHHHHHHH
Confidence 455666666643 3456778999999999999877533 333333 122 45444 5566666553
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.21 Score=58.43 Aligned_cols=59 Identities=27% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCHHHHHHHH---HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 496 LNRVQSRVYK---SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 496 l~~iQ~~~i~---~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
+++.|..++. ..+....|++++||+|+|||-.+. ++.+.+... +.+++|+ +...|+.++
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~----------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN----------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc----------CCceeee-eHHHHHHHH
Confidence 3455555553 234567899999999999997664 344444332 3356555 445555554
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=60.60 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.2
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~ 531 (1665)
.++++.||+|+|||.++-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999988554
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.026 Score=74.61 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=73.7
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeC-CCcc-chhccC
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG-ETAM-DLKLLE 1437 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G-~~~~-~~~~l~ 1437 (1665)
-|.-+.||-|||+++.+|+.-.... +. -+-+|+..--||..=.+ |...+-..+|++|+++.. +.+. ..+..-
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDae-wmgply~fLGLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSE-WMGPLYEFHGLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHH-HHHHHHHHhCCceeecCCCCCCHHHHHHhC
Confidence 5899999999999999998755554 22 24455666667765444 444555567999998866 3333 345556
Q ss_pred CCcEEEEChhhHH-HHHHh-h---hccccCCCccEEEeecccccC
Q 000324 1438 KGQIIISTPEKWD-ALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1438 ~~~IIV~TPe~l~-~l~r~-~---~~~~~l~~v~llViDEaH~l~ 1477 (1665)
.+||+.+|...|- +.+|. . ..........+.||||+|.++
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 7899999998762 12221 1 111223458889999999653
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.093 Score=61.24 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=72.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCC----C---CeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASET----G---VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~----~---~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~ 1430 (1665)
.|++++++||.|||.+. +++....+. . -|-+++-+|...-....|..+-..++...+- .
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~--- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------R--- 127 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------C---
Confidence 47999999999999854 444432111 1 1345666777777777777666555432100 0
Q ss_pred cchhccCCCcEEEEChhhH----HHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEE
Q 000324 1431 MDLKLLEKGQIIISTPEKW----DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (1665)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l----~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~ 1506 (1665)
.+...+ ..+++. .+++++||||+|.++...+..-+.++.-++++.+.+ .+.+|+
T Consensus 128 -------------~~~~~~~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~ 185 (302)
T PF05621_consen 128 -------------DRVAKLEQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVG 185 (302)
T ss_pred -------------CCHHHHHHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEE
Confidence 011222 223332 478999999999987766666778899999987655 455666
Q ss_pred Ec
Q 000324 1507 LS 1508 (1665)
Q Consensus 1507 lS 1508 (1665)
+.
T Consensus 186 vG 187 (302)
T PF05621_consen 186 VG 187 (302)
T ss_pred ec
Confidence 54
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.47 Score=57.59 Aligned_cols=129 Identities=15% Similarity=0.147 Sum_probs=65.2
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEECCCc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
..+.++||||+|||+.+....... ... +.++.++. |.|.-+.++...+.+. .|+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~~----------GkkVglI~aDt~RiaAvEQLk~yae~---lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HGK----------KKTVGFITTDHSRIGTVQQLQDYVKT---IGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HHc----------CCcEEEEecCCcchHHHHHHHHHhhh---cCCcEE-------
Confidence 468899999999988665443332 221 22344333 4555455554444432 232221
Q ss_pred ccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
.+.+|..+....+.... ..+.++|+||-+=..+.. . ..+..+.+.+....+...++.+|||
T Consensus 301 -----------v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-~----~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-S----ETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred -----------ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-H----HHHHHHHHHHhhcCCCeEEEEECCc
Confidence 23356654222222110 124789999988654422 1 2233333333333344445669998
Q ss_pred CCChHHHHHHHh
Q 000324 670 LPNYEDVALFLR 681 (1665)
Q Consensus 670 l~n~~dv~~~l~ 681 (1665)
.. ..++...+.
T Consensus 362 tk-~~d~~~i~~ 372 (436)
T PRK11889 362 MK-SKDMIEIIT 372 (436)
T ss_pred cC-hHHHHHHHH
Confidence 64 345444443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.061 Score=55.50 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~ 566 (1665)
..+++++||+|+|||..+...+ ..+... ...++++.+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~----------~~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPP----------GGGVIYIDGEDILEEVL 46 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCC----------CCCEEEECCEEccccCH
Confidence 3579999999999998764432 222111 12477887776654433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.1 Score=60.83 Aligned_cols=121 Identities=19% Similarity=0.136 Sum_probs=64.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
.|++++|+||.|||.+..- ....+....+.-...-+.+++-+|..+=....+..+-..+. ..... .+
T Consensus 62 p~lLivG~snnGKT~Ii~r----F~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg---aP~~~--~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIER----FRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG---APYRP--RD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHH----HHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC---cccCC--CC----
Confidence 4899999999999975422 22233221111011124455667877766666666544432 21110 00
Q ss_pred HhhhccccEEEeChhh----HHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEE
Q 000324 592 RQQIEETQIIVTTPEK----WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 592 ~~~~~~~~IiV~TPek----ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~l 666 (1665)
+..+ ...++|.. .++++||||+|.+..+....-..++.-+..... .-.+.+|++
T Consensus 129 ------------~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N--eL~ipiV~v 186 (302)
T PF05621_consen 129 ------------RVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN--ELQIPIVGV 186 (302)
T ss_pred ------------CHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHhh--ccCCCeEEe
Confidence 1111 12344433 379999999999877554444555554433322 335666665
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.011 Score=64.03 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=56.1
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccCCcEEEEEECCCcccHhh
Q 000324 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (1665)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~ 594 (1665)
++.|+-|-|||.+.-+++...+.. ...+|++.+|..+-++..++.....+..++.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 578999999998766555433322 2357999999999999888777666665554441100000000011
Q ss_pred hccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCCChH
Q 000324 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (1665)
Q Consensus 595 ~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~n~~ 674 (1665)
.....|-+..|+. +.... ...+++|||||=.+. -|.+ .++ -.....|.||.|+..|+
T Consensus 71 ~~~~~i~f~~Pd~---l~~~~------~~~DlliVDEAAaIp---~p~L----~~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDE---LLAEK------PQADLLIVDEAAAIP---LPLL----KQL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHH---HCCT----------SCEEECTGGGS----HHHH----HHH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHH---HHhCc------CCCCEEEEechhcCC---HHHH----HHH-------HhhCCEEEEEeeccccc
Confidence 1245677777773 22221 234899999998774 1122 222 12334578899988776
Q ss_pred HHH
Q 000324 675 DVA 677 (1665)
Q Consensus 675 dv~ 677 (1665)
--.
T Consensus 128 GtG 130 (177)
T PF05127_consen 128 GTG 130 (177)
T ss_dssp BB-
T ss_pred cCC
Confidence 543
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.66 Score=53.49 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHc-------CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYN-------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~-------~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~ 1406 (1665)
|...++-|.+++..+.. +..++++.+++|+|||..+. ++...+.. .+. .++|+ +..+|....
T Consensus 74 f~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~-aia~~l~~--~g~--~v~~i-t~~~l~~~l 142 (244)
T PRK07952 74 YRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAA-AICNELLL--RGK--SVLII-TVADIMSAM 142 (244)
T ss_pred ccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHh--cCC--eEEEE-EHHHHHHHH
Confidence 33334556556554432 12469999999999998874 44555554 122 45555 444554443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.52 Score=53.65 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHcCCC----cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1343 NPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~~~d----nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
|..=..+...+..+.+ .+++.+|+|+|||-. +.++...+....++. +++|+... +........+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~------ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD------ 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc------
Confidence 3333444444544332 489999999999995 455666565533444 78877533 444444433320
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhc
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~ 1498 (1665)
+.+..+... +...++++||++|.+.+.. ..-+.+...+..+..
T Consensus 86 ----------------------------~~~~~~~~~------~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~-- 128 (219)
T PF00308_consen 86 ----------------------------GEIEEFKDR------LRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE-- 128 (219)
T ss_dssp ----------------------------TSHHHHHHH------HCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH--
T ss_pred ----------------------------ccchhhhhh------hhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh--
Confidence 011222222 4578999999999996432 233455555555543
Q ss_pred CCCCeEEEEcccCCC
Q 000324 1499 ENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1499 ~~~~riI~lSATl~n 1513 (1665)
.+.++|+.|...|.
T Consensus 129 -~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 129 -SGKQLILTSDRPPS 142 (219)
T ss_dssp -TTSEEEEEESS-TT
T ss_pred -hCCeEEEEeCCCCc
Confidence 35677777766554
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.38 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHh
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (1665)
.+++++||+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 479999999999998764 55555544
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.09 Score=68.73 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000324 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~ 571 (1665)
.|+.+|..-++. +|+.+=|-|+.-.-|-|||..- +.+|.++.-.... -++ =+||+||--+.+ +.-+|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegn------WGP-HLIVVpTsviLn-WEMElK 685 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGN------WGP-HLIVVPTSVILN-WEMELK 685 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccC------CCC-ceEEeechhhhh-hhHHHh
Confidence 577888887765 5777789999999999999755 3334343322111 123 467788865543 334566
Q ss_pred HhhccCCcEEEEEECCCcccHhh---h---ccccEEEeChhhH-HHHHhhcCCCccccceeEEEEecccccccCCchHHH
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQ---I---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~---~---~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le 644 (1665)
+++. |++|..++|...-.+.. + +..||.|+++..+ ..+.- ..-.+++++|+||+|.+.+.+...+.
T Consensus 686 RwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEaqnIKnfksqrWQ 758 (1958)
T KOG0391|consen 686 RWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEAQNIKNFKSQRWQ 758 (1958)
T ss_pred hhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhhhhhcchhHHHHH
Confidence 6544 88999999976533322 2 2458888888753 11111 11224689999999999876655666
Q ss_pred HHHH
Q 000324 645 SIVA 648 (1665)
Q Consensus 645 ~iv~ 648 (1665)
.++.
T Consensus 759 Alln 762 (1958)
T KOG0391|consen 759 ALLN 762 (1958)
T ss_pred HHhc
Confidence 6554
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.36 Score=58.17 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=63.6
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHHhhccCCcEEEEEECCCc
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP--~raLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
..++++||+|+|||+...-.+ ..+... +.+++++.. .|+-+.++...+... +|+.+.. +...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~--~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIK--HKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceec--ccCC
Confidence 358899999999998554333 233321 346666653 345555555555443 3554432 1111
Q ss_pred ccHhhhccccEEEeChhh--HHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 590 LTRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPek--ld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
. .|.. ++.+.... ....++||||.+++++... . ++..+........+...++.++
T Consensus 205 ~-------------dp~~v~~~ai~~~~-----~~~~DvVLIDTaGr~~~~~-~----lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 205 A-------------DPAAVAYDAIEHAK-----ARGIDVVLIDTAGRMHTDA-N----LMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred C-------------CHHHHHHHHHHHHH-----hCCCCEEEEECCCccCCcH-H----HHHHHHHHHHhhCCceEEEeec
Confidence 1 1111 12222111 1246799999999886321 1 2222222223345667788889
Q ss_pred ccCCC
Q 000324 668 ATLPN 672 (1665)
Q Consensus 668 ATl~n 672 (1665)
||..+
T Consensus 262 a~~g~ 266 (336)
T PRK14974 262 ALAGN 266 (336)
T ss_pred cccch
Confidence 98764
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.13 Score=66.98 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
...||.-|++|+..++...+-.+|.|-+|+|||......| +.+.. .+.+|+..+=|-..+..+.-++..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~----------~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA----------LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH----------cCCeEEEEehhhHHHHHHHHHHhc
Confidence 4589999999999999998989999999999997654333 33322 255899999998887777655544
Q ss_pred hhccCCcEEEEEECCCcccH--------------------hhhccccEEEeChhhH-HHHHhhcCCCccccceeEEEEec
Q 000324 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~--------------------~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDE 631 (1665)
.++.+..+..+....+ ...+++.|+.||==-+ +.|. ..+.+++.||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-------~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-------VNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-------hccccCEEEEcc
Confidence 3554443333332221 1234677888773222 2222 224479999999
Q ss_pred ccccc
Q 000324 632 IHLLH 636 (1665)
Q Consensus 632 aH~l~ 636 (1665)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98775
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.092 Score=69.73 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..++.+|-.-++-++. .+.|+|+.-.-|-|||+--.- .|..+.... -.| -.|+|+|.--+. .|...|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~g--pflvvvplst~~-----~W~~ef~ 440 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHG--PFLVVVPLSTIT-----AWEREFE 440 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccC--CeEEEeehhhhH-----HHHHHHH
Confidence 5788888887776543 467799999999999975422 222222211 233 467888875543 3444444
Q ss_pred CCCCcEEEEEeCCCccch--h----cc------CCCcEEEEChhhHHHHHHhhhccccCC--CccEEEeecccccCCCCc
Q 000324 1416 QGLGMRVVELTGETAMDL--K----LL------EKGQIIISTPEKWDALSRRWKQRKYVQ--QVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1416 ~~~~i~v~~l~G~~~~~~--~----~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~--~v~llViDEaH~l~~~~g 1481 (1665)
.-...++++++|+..... + .. -+.+++++|-+.+..- +..+. ...+++|||||++-....
T Consensus 441 ~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD------k~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 441 TWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD------KAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc------HhhhccCCcceeeecHHhhcCchHH
Confidence 334678999999865431 1 01 1358999998876421 11222 346899999999975543
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC-hHHHHHHh
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (1665)
Q Consensus 1482 ~~~e~~~srl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl 1521 (1665)
..|+. +.++..+.+++...++|.| .+++...+
T Consensus 515 ~l~~~--------l~~f~~~~rllitgTPlQNsikEL~sLl 547 (1373)
T KOG0384|consen 515 KLYES--------LNQFKMNHRLLITGTPLQNSLKELWSLL 547 (1373)
T ss_pred HHHHH--------HHHhcccceeeecCCCccccHHHHHHHh
Confidence 33333 2234456666555555665 45665444
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.34 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHH
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~ 537 (1665)
..+++|+||+|+|||.++ ..+++.+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999866 34444443
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.44 Score=65.35 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~ 1418 (1665)
-..+++-|.+|+..+..++.-++|.++.|+|||.+.- ++...|.. .+. +++-++||---+....+ . .
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~--~G~--~V~g~ApTgkAA~~L~e----~----~ 445 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA--AGY--RVVGGALAGKAAEGLEK----E----A 445 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH--cCC--eEEEEcCcHHHHHHHHH----h----h
Confidence 4579999999999887666667899999999998753 34455544 233 89999999665544322 1 1
Q ss_pred CcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhh-hccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhh
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW-KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1419 ~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~-~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~ 1497 (1665)
|+.. .|-.+|. ..| .....+..-++|||||+-++.... +..++..+.
T Consensus 446 Gi~a---------------------~TIas~l---l~~~~~~~~l~~~~vlVIDEAsMv~~~~---m~~Ll~~~~----- 493 (1102)
T PRK13826 446 GIQS---------------------RTLSSWE---LRWNQGRDQLDNKTVFVLDEAGMVASRQ---MALFVEAVT----- 493 (1102)
T ss_pred CCCe---------------------eeHHHHH---hhhccCccCCCCCcEEEEECcccCCHHH---HHHHHHHHH-----
Confidence 2221 1222221 122 123346667899999999996322 222222211
Q ss_pred cCCCCeEEEEccc
Q 000324 1498 VENKIRIVALSTS 1510 (1665)
Q Consensus 1498 ~~~~~riI~lSAT 1510 (1665)
....++|++.=+
T Consensus 494 -~~garvVLVGD~ 505 (1102)
T PRK13826 494 -RAGAKLVLVGDP 505 (1102)
T ss_pred -hcCCEEEEECCH
Confidence 246777777643
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.19 Score=64.98 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEECCCCChHHHHHHHHHH---HHHHhh---------c-------------------
Q 000324 1341 HFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAIL---RNHQKA---------S------------------- 1386 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~---~~dnvlv~ApTGSGKTl~a~l~il---~~l~~~---------~------------------- 1386 (1665)
+|+|.|......++. ...|.++.+|||+|||++-+-..| +++... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 567788776666543 345699999999999987554443 333311 0
Q ss_pred --C----CCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1387 --E----TGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1387 --~----~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
+ .+-|++.|-.-|..-..|+.++++ +++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElr-rT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELR-RTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHh-hcC
Confidence 0 012688888899999999999998 554
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.2 Score=57.78 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=28.8
Q ss_pred cccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcccCC
Q 000324 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSATl~ 671 (1665)
....++.||+||||.|..+-. +.+++.++......|+++..--+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-------~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-------AALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-------HHHHHHHhccccceEEEEEcCChh
Confidence 445579999999999864211 123334455566788888765543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.42 Score=50.93 Aligned_cols=40 Identities=35% Similarity=0.494 Sum_probs=26.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHH
Q 000324 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~ 564 (1665)
++|+||+|+|||..+...+..... .+..++|+..-..+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEECCcchHH
Confidence 689999999999877554443322 1346888776555433
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.16 Score=62.56 Aligned_cols=124 Identities=24% Similarity=0.371 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHH--HHHHHHH
Q 000324 1341 HFNPIQTQVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER--YRDWEIK 1413 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll-----~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~--~~~~~~~ 1413 (1665)
++|+-|.+++..++ ..+.+++|.+|-|+|||.+.-. +...+.. .+. .+++++||-.-|..+ -..+...
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHh
Confidence 47889999988873 2456799999999999987632 3333332 222 788999997766655 2222222
Q ss_pred hcCCCCcEEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~ 1493 (1665)
|+ +.+.. . . ... +.+.+-. ..+..+.+++++|+||+=++.. ..+..+-.+++.
T Consensus 76 f~----i~~~~---~-~-------~~~---~~~~~~~------~~~~~l~~~~~lIiDEism~~~---~~l~~i~~~lr~ 128 (364)
T PF05970_consen 76 FG----IPINN---N-E-------KSQ---CKISKNS------RLRERLRKADVLIIDEISMVSA---DMLDAIDRRLRD 128 (364)
T ss_pred cC----ccccc---c-c-------ccc---ccccccc------hhhhhhhhheeeecccccchhH---HHHHHHHHhhhh
Confidence 22 11100 0 0 000 0111111 1234577899999999998853 345556666776
Q ss_pred HHh
Q 000324 1494 IAS 1496 (1665)
Q Consensus 1494 i~~ 1496 (1665)
+..
T Consensus 129 i~~ 131 (364)
T PF05970_consen 129 IRK 131 (364)
T ss_pred hhc
Confidence 655
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.52 Score=53.65 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
|..=..+...+....+ .++++||+|+|||-. +.++.+.+.... ++.+++|+... +...+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4443444444444322 489999999999984 456666655421 24578887543 344443333321
Q ss_pred hhccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHH
Q 000324 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~ 652 (1665)
...+ .+.. .+...++++||.+|.+.+. +..+..+-.+..
T Consensus 86 ------------------------------~~~~---~~~~------~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ------------------------------GEIE---EFKD------RLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ------------------------------TSHH---HHHH------HHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ------------------------------ccch---hhhh------hhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 0111 1222 2335789999999998642 222223333333
Q ss_pred HHhhccCCeeEEEEcccCCC
Q 000324 653 QIETTKEHIRLVGLSATLPN 672 (1665)
Q Consensus 653 ~~~~~~~~~riV~lSATl~n 672 (1665)
.+. ..+.++|+.|...|+
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 222 235577777767664
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.31 Score=55.82 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHH
Q 000324 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAV 529 (1665)
Q Consensus 497 ~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~ 529 (1665)
+.....++..+.. ...+++++||+|+|||..+.
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 3344444544433 34679999999999997664
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.59 Score=60.03 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i 1420 (1665)
.++|+|...+..+..++- .++..+=..|||.+....++..... .++. .+++++|+++-+..+++.++..+......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 588999999988755444 5788889999999987544443333 2333 89999999999999999888544322111
Q ss_pred -EEEEEeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccC
Q 000324 1421 -RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1421 -~v~~l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~ 1477 (1665)
+.. +.........+-.++.|.+.|... . . ..=.+..++|+||+|.+.
T Consensus 135 ~~~~-i~~~~~~~I~l~NGS~I~~lss~~-~----t----~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 135 LQPG-IVEWNKGSIELENGSKIGAYASSP-D----A----VRGNSFAMIYIDECAFIP 182 (534)
T ss_pred hhcc-eeecCccEEEeCCCCEEEEEeCCC-C----c----cCCCCCceEEEeccccCC
Confidence 111 111111111122344554544221 0 0 111256789999999874
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.37 Score=60.16 Aligned_cols=137 Identities=13% Similarity=0.203 Sum_probs=84.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHH-HHHHHHHHHHHhhccCCcEEEEEECCCccc
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~ra-La~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
-.+++|..|||||.++.+.++..+.... .+.+++++.|+.. |...++..+...+..+|+....-..+....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE
Confidence 3678999999999999888887776641 2457999999887 777788888887777665432222222111
Q ss_pred Hhhhc-cccEEEeCh-hhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEccc
Q 000324 592 RQQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 592 ~~~~~-~~~IiV~TP-ekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSAT 669 (1665)
-.... +..|++..- +..+.+. ....+.++.+|||..+.. ..++.++.|++. +...+.|.+|.|
T Consensus 75 i~~~~~g~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~N 139 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSN 139 (396)
T ss_pred EEecCCCeEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcC
Confidence 11112 345666443 3322221 122368999999998853 367777776421 122224677777
Q ss_pred CCC
Q 000324 670 LPN 672 (1665)
Q Consensus 670 l~n 672 (1665)
.+.
T Consensus 140 P~~ 142 (396)
T TIGR01547 140 PES 142 (396)
T ss_pred cCC
Confidence 554
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.59 Score=61.02 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhcc
Q 000324 498 RVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~ 576 (1665)
.-|.+.|..++..+. .+++.|.=|=|||.++=+++.. +.... ....|++++|+++-++..+.-..+.+..
T Consensus 217 ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~--------~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 217 AEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA--------GSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred HHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc--------CCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 344445666676655 7889999999999988877733 33221 0358999999999999998888887777
Q ss_pred CCcEEEEEECC-CcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHh
Q 000324 577 YDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE 655 (1665)
Q Consensus 577 ~gi~V~~ltGd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~ 655 (1665)
+|.+-.+.... ............|=+-+|.. .. + .-+++|||||=.+. -|.++.++.+
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~--a~-~---------~~DllvVDEAAaIp---lplL~~l~~~------ 346 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDD--AQ-E---------EADLLVVDEAAAIP---LPLLHKLLRR------ 346 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcch--hc-c---------cCCEEEEehhhcCC---hHHHHHHHhh------
Confidence 76553222211 11111111233466677763 11 1 14799999998775 2334444332
Q ss_pred hccCCeeEEEEcccCCChHH
Q 000324 656 TTKEHIRLVGLSATLPNYED 675 (1665)
Q Consensus 656 ~~~~~~riV~lSATl~n~~d 675 (1665)
.+.++||.|+..|+-
T Consensus 347 -----~~rv~~sTTIhGYEG 361 (758)
T COG1444 347 -----FPRVLFSTTIHGYEG 361 (758)
T ss_pred -----cCceEEEeeeccccc
Confidence 245999999987763
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.4 Score=56.85 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.0
Q ss_pred CcEEEEccCCCchHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~ 531 (1665)
-++++.||+|+|||.+|-..
T Consensus 60 ~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999988554
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.24 Score=62.56 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=26.5
Q ss_pred ccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 619 TYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 619 ~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
+.....+++||||+|.|.. ..+. .+++.++..++.+.+|+.+
T Consensus 112 P~~~~~KVvIIDEah~Ls~---~A~N----aLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 112 PISSKFKVYIIDEVHMLSN---SAFN----ALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cccCCceEEEEeChHhCCH---HHHH----HHHHHHhCCCCCeEEEEEe
Confidence 3456789999999999863 2223 3344455555566666543
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.034 Score=61.81 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=24.8
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcc
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP 558 (1665)
-.++.||+|+|||+.++-.+.+.... +.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-----------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-----------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-----------CCeEEEEec
Confidence 36889999999998776665554432 346777766
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.13 Score=61.50 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
...+++.|.+.+..+...+.|++++++||||||... -+++..+...++.. +++.|-.+.||.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~--rivtiEd~~El~ 187 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPED--RLVILEDTAEIQ 187 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCc--eEEEecCCcccc
Confidence 345788999999998888899999999999999876 45565554323333 888888888873
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.37 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~ 537 (1665)
+.++++||+|+|||-.+. ++.+.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 349999999999997654 4444443
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.2 Score=52.73 Aligned_cols=86 Identities=21% Similarity=0.289 Sum_probs=57.3
Q ss_pred EEecCCCCHHHHHHHHHHHhCCC-CCeEEeccccccccCCCce---EEEEecccccCCCCC-----------------Cc
Q 000324 798 AIHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH---TVIIKGTQIYNPEKG-----------------AW 856 (1665)
Q Consensus 798 ~~~Hagm~~~dR~~v~~~F~~g~-i~VLVaT~tla~GVdlP~v---~vVI~~t~~yd~~~g-----------------~~ 856 (1665)
.++.-+....+...+.+.|+... ..||++|..++.|||+|+. .|||.| .||-++.. .+
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~g-lPfp~~~d~~~~~~~~~~~~~~~~~~~ 103 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDG-LPFPYPDSPILKARLELLRDKGQIRPF 103 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEe-cCCCCCCCHHHHHHHHHHHHhCCCCch
Confidence 44455566667788999998654 3799999889999999984 455655 44432221 11
Q ss_pred cc----CCHHHHHhhhcccCCCCCCCceEEEEE
Q 000324 857 TE----LSPLDIMQMLGRAGRPQYDSYGEGIII 885 (1665)
Q Consensus 857 ~~----~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (1665)
.. .....+.|.+||+-|... ..|..+++
T Consensus 104 ~~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~ 135 (141)
T smart00492 104 DFVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIA 135 (141)
T ss_pred hHHHHHHHHHHHHHHhCccccCcC-ceEEEEEE
Confidence 21 224678899999999764 46755554
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.088 Score=58.11 Aligned_cols=48 Identities=27% Similarity=0.301 Sum_probs=32.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.++|.||+|+|||..++..+...+.. +.+++|+..- +-..++.+++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-----------g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-----------GEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-----------CCcEEEEECC-CCHHHHHHHHHH
Confidence 37899999999999887766665532 3368888653 445555555543
|
A related protein is found in archaea. |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.16 Score=65.34 Aligned_cols=146 Identities=15% Similarity=0.226 Sum_probs=78.8
Q ss_pred cCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH---HHHHh-cCC-CCcEEEEEeCCC
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD---WEIKF-GQG-LGMRVVELTGET 1429 (1665)
Q Consensus 1355 ~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~---~~~~~-~~~-~~i~v~~l~G~~ 1429 (1665)
.+.-|+=|.|.||+|||.||+-.|...-... |-.+-|++||+.|.-.-++.. ...-| +.. .+.+.-.+.-+.
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~Y---G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKY---GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHh---CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 3445788999999999999988887655542 223899999999986654333 33344 222 223333332221
Q ss_pred cc---chhccCCCcEEEEChhhHHHH------HH----hhhc-----ccc---CC-CccEEEeecccccCCCCchhHHHH
Q 000324 1430 AM---DLKLLEKGQIIISTPEKWDAL------SR----RWKQ-----RKY---VQ-QVSLFIIDELHLIGGQGGPVLEVI 1487 (1665)
Q Consensus 1430 ~~---~~~~l~~~~IIV~TPe~l~~l------~r----~~~~-----~~~---l~-~v~llViDEaH~l~~~~g~~~e~~ 1487 (1665)
.. ....-..+.+++.|...++.- +. .... ... +. .=-.+||||-|++.++ ...|
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~--- 224 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTY--- 224 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHH---
Confidence 11 111223446666665544321 00 0000 000 11 1137999999999753 1122
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1488 ~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
..+..+ .+.-++=+|||.++
T Consensus 225 -~~i~~l-----~pl~ilRfgATfkd 244 (985)
T COG3587 225 -GAIKQL-----NPLLILRFGATFKD 244 (985)
T ss_pred -HHHHhh-----CceEEEEecccchh
Confidence 222222 24446778999875
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.57 Score=59.17 Aligned_cols=109 Identities=13% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccC
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~ 1437 (1665)
..+++.+++|+|||... -++.+.+....++. +++|+.+ .++..+....+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 34899999999999765 45666665533333 7777655 566666555443100
Q ss_pred CCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCC
Q 000324 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
+.+..+... +.+++++||||+|.+.... ...+.+..-++.+.. .+.|+|+.|-..|
T Consensus 195 ---------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~-~~~e~lf~l~N~~~~---~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE-KTNEIFFTIFNNFIE---NDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH------hccCCEEEEeccccccCCH-HHHHHHHHHHHHHHH---cCCcEEEECCCCH
Confidence 112222222 4578999999999885422 234555555555532 3446666555433
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.12 Score=69.24 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.||+-|.+++.. ...+++|.|..|||||.+..--|.+.+..... ...+|++|+.|+..|.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998863 34679999999999999888777777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEECCCcccHhhhccccEEEeChhhH
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl 608 (1665)
+.. ...++-|+|-..|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 310 1245789999986
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.5 Score=55.54 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHH---c-CCCcEEEECCCCChHHHHHHH
Q 000324 1339 FKHFNPIQTQVFTVLY---N-TDDNVLVAAPTGSGKTICSEF 1376 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll---~-~~dnvlv~ApTGSGKTl~a~l 1376 (1665)
+-.+++.+.+++..+- . +...+++.+|+|+|||..+..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 4566777777777653 2 344689999999999988754
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.13 Score=69.14 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... .+..+|++++.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999998863 3457999999999999987766666664321 12447999999999999999999886
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhcCC-CccccceeEEEEeccc
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (1665)
++. + ...+.|+|-..| ..++|.... ...-. .+-|+|+.+
T Consensus 73 ~~~----------~---------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 113 (715)
T TIGR01075 73 LGT----------S---------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDD 113 (715)
T ss_pred hcc----------c---------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 431 0 125788999986 344444321 11111 244677765
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.052 Score=53.74 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=44.3
Q ss_pred HHHHHhHcCCcccccCCCccccChHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHhcCCccCCCCcCCh
Q 000324 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (1665)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~~s~s~Ef~~i~~R~ 1046 (1665)
|+..|...|+|+.+ + .+|++|+.++.++++|+-.+++.......+. .+++.+.|.-++ .++.++.
T Consensus 2 A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~-~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 2 ALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCL-DEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-H-HHHHHHHHHHTS-S--B---
T ss_pred HHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhccccccH-HHHHHHHHHHcC-CCcccCc
Confidence 77899999999644 2 8999999999999999999999887777763 556666666555 6666664
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.6 Score=61.28 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCcE-EEECCCCChHHHHHHHHHHHHHHhhcCC---CCeEEEEEc
Q 000324 1357 DDNV-LVAAPTGSGKTICSEFAILRNHQKASET---GVMRAVYIA 1397 (1665)
Q Consensus 1357 ~dnv-lv~ApTGSGKTl~a~l~il~~l~~~~~~---~~~r~l~I~ 1397 (1665)
..++ +|.++||+|||++.-.. ++.+...... ..+..++|-
T Consensus 780 pnnvLYIyG~PGTGKTATVK~V-LrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSV-IQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHH-HHHHHHHHhhccCCCceEEEEe
Confidence 3355 59999999999997554 3444331111 124567773
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.69 Score=54.33 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=29.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHH
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~ 1409 (1665)
.+++.+++|+|||..+. ++.+.+... +. .++|+ +..+++.++...
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~--~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GV--PVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CC--eEEEE-EHHHHHHHHHHH
Confidence 39999999999999885 566666652 22 44444 556666554443
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.13 Score=61.66 Aligned_cols=61 Identities=25% Similarity=0.240 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreL 1402 (1665)
...+++.|.+.+..+..++.|++++++||||||... -+++..+....+.. ++++|-.+.||
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~--rivtIEd~~El 190 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTE--RVFIIEDTGEI 190 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCc--eEEEEcCCCcc
Confidence 345778899999988888899999999999999554 55555443222333 88888888876
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.11 Score=63.91 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=81.1
Q ss_pred EECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc------
Q 000324 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL------ 1435 (1665)
Q Consensus 1362 v~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~------ 1435 (1665)
..+.||||||++..-.||....+... .-|+.|..-..++.....+........=..-....++.....+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr----~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR----NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh----hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 35789999999988888877666322 57777777777776665554222110000001111222221111
Q ss_pred -cCCCcEEEEChhhHHHHHHhhhcc----ccCCCcc-EEEeecccccCCCC----------chhHHHHHHHHHHHHhhcC
Q 000324 1436 -LEKGQIIISTPEKWDALSRRWKQR----KYVQQVS-LFIIDELHLIGGQG----------GPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1436 -l~~~~IIV~TPe~l~~l~r~~~~~----~~l~~v~-llViDEaH~l~~~~----------g~~~e~~~srl~~i~~~~~ 1499 (1665)
-..-.|..+|.+.+.....+-+.. ..+.+.. +++-||+|++.... -..|+.. +.... .-.
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~---v~la~-~~n 153 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESV---VKLAL-EQN 153 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHH---HHHHH-hcC
Confidence 122379999999986655442221 1233333 45679999997521 1112221 11111 224
Q ss_pred CCCeEEEEcccCCChHHHHHHh
Q 000324 1500 NKIRIVALSTSLANAKDLGEWI 1521 (1665)
Q Consensus 1500 ~~~riI~lSATl~n~~dl~~wl 1521 (1665)
++.-++.+|||++...++..-.
T Consensus 154 kd~~~lef~at~~k~k~v~~ky 175 (812)
T COG3421 154 KDNLLLEFSATIPKEKSVEDKY 175 (812)
T ss_pred CCceeehhhhcCCccccHHHHh
Confidence 4556678899998655555444
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.19 Score=64.62 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred HHHHHHHcCC---CcEEEEccCCCchHHHHHHH
Q 000324 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 502 ~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~ 531 (1665)
+.+..++.++ ..+|++||.|+|||.+|.+.
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444555544 35699999999999888543
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.23 Score=66.00 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHH--HcC-CCcEEEECCCCChHHHHHHHHHHHHHHhhc----CCCCeEEEEEcccHHHHHHHHHHHHHH
Q 000324 1341 HFNPIQTQVFTVL--YNT-DDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~l--l~~-~dnvlv~ApTGSGKTl~a~l~il~~l~~~~----~~~~~r~l~I~PtreLa~Q~~~~~~~~ 1413 (1665)
.++.+|.+-++.+ ++. .=+-|+|---|=|||+-..-.+..-....+ .-...-.|||||. .|+.-+..+|. +
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~-k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK-K 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH-H
Confidence 5677888877754 222 225799999999999976444333222211 0111237999997 68888999998 5
Q ss_pred hcCCCCcEEEEEeCCCccchh---ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHH
Q 000324 1414 FGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (1665)
Q Consensus 1414 ~~~~~~i~v~~l~G~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~sr 1490 (1665)
|... ++|..+.|....... ..++++|||++.+.+-+-.-.... ....++|+||-|-|-... ++
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~----~~wNYcVLDEGHVikN~k--------tk 1118 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK----IDWNYCVLDEGHVIKNSK--------TK 1118 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh----cccceEEecCcceecchH--------HH
Confidence 6554 677778887655433 445679999998876421111111 245699999999986433 23
Q ss_pred HHHHHhhcCCCCeEEEEcccCCC
Q 000324 1491 MRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1491 l~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+....+++..+.|+|+-.+++.|
T Consensus 1119 l~kavkqL~a~hRLILSGTPIQN 1141 (1549)
T KOG0392|consen 1119 LTKAVKQLRANHRLILSGTPIQN 1141 (1549)
T ss_pred HHHHHHHHhhcceEEeeCCCccc
Confidence 33333344556676654444555
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.84 Score=53.61 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=45.7
Q ss_pred cccCCCChhhH-hhcCCCCCCCHHHHHHHHHHH---c-----CCCc--EEEEccCCCchHHHHHHHHHHHHHhcCCCCCC
Q 000324 477 IKISEMPEWAQ-PAFKGMTQLNRVQSRVYKSAL---S-----SADN--ILLCAPTGAGKTNVAVLTILQQLALNRNDDGS 545 (1665)
Q Consensus 477 ~~i~~Lp~~~~-~~f~g~~~l~~iQ~~~i~~~l---~-----~~~n--vlv~APTGsGKT~~a~l~il~~l~~~~~~~g~ 545 (1665)
...+.+|+.+. ..|.+|. .++-|..++..+. . ...+ +++.||+|+|||..+. +|.+.+...
T Consensus 70 ~~~s~i~~~~~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~~------ 141 (268)
T PRK08116 70 KSNSLLDEKFRNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIEK------ 141 (268)
T ss_pred HHhcCCCHHHHhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHHc------
Confidence 34444554433 3355665 4666666655432 1 1224 9999999999998775 566666543
Q ss_pred CCCCCcEEEEEcccHHHHHHHHHH
Q 000324 546 FNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 546 ~~~~~~kil~iaP~raLa~q~~~~ 569 (1665)
+..++|+ +...|..++...
T Consensus 142 ----~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 142 ----GVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred ----CCeEEEE-EHHHHHHHHHHH
Confidence 2245555 445555544333
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.15 Score=68.68 Aligned_cols=109 Identities=24% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++.. ...+++|.|..|||||.+..--+.+.+.... ....+|++|+-|+..|.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4699999999863 3467999999999999988776666664321 12447999999999999999999886
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhhcCC-CccccceeEEEEeccc
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~liIiDEaH 633 (1665)
++.. ...+.|+|-..| ..++|.... ..+-. ..-|+|+.+
T Consensus 78 ~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 118 (721)
T PRK11773 78 LGTS-------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQ--DFQILDSDD 118 (721)
T ss_pred hccC-------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 5310 124778999986 344444211 11111 244677765
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.48 Score=57.78 Aligned_cols=121 Identities=13% Similarity=0.187 Sum_probs=63.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~--PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~ 1434 (1665)
+..+++++|||+|||.....-+.+..... ... ++.++. +.+.-+.++...|.+. .|+.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~--~V~lit~D~~R~ga~EqL~~~a~~----~gv~~~----------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GAS--KVALLTTDSYRIGGHEQLRIFGKI----LGVPVH----------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCC--eEEEEecccccccHHHHHHHHHHH----cCCceE-----------
Confidence 55799999999999998755444433331 112 343332 1222344445444433 233332
Q ss_pred ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.+-+++.+...+.+ +.+.++++||.+-+...+. .+...+..+.......-.++.+|||...
T Consensus 199 -------~~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~d~-----~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 199 -------AVKDGGDLQLALAE------LRNKHMVLIDTIGMSQRDR-----TVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred -------ecCCcccHHHHHHH------hcCCCEEEEcCCCCCcccH-----HHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 23344444433433 3456899999996443211 1333344333322334557888999754
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.4 Score=53.64 Aligned_cols=128 Identities=21% Similarity=0.240 Sum_probs=66.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEE-c-ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-A-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I-~-PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~ 1435 (1665)
..+.+++|||+|||.....-... +.. .+. ++.++ + |.|.-+.++...+. ...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--~Gk--kVglI~aDt~RiaAvEQLk~ya----e~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--KKK--TVGFITTDHSRIGTVQQLQDYV----KTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--cCC--cEEEEecCCcchHHHHHHHHHh----hhcCCcE-------------
Confidence 45889999999999986554433 332 122 34433 3 34433333333333 2222222
Q ss_pred cCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCChH
Q 000324 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515 (1665)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~~ 1515 (1665)
+++.+|..+...+..... -.+.++|+||-+=+..... ..+..+..+.....+...++.+|||... +
T Consensus 300 -----~v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~-----~lm~EL~~~lk~~~PdevlLVLsATtk~-~ 365 (436)
T PRK11889 300 -----IAVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRAS-----ETVEEMIETMGQVEPDYICLTLSASMKS-K 365 (436)
T ss_pred -----EecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCH-----HHHHHHHHHHhhcCCCeEEEEECCccCh-H
Confidence 223467666655544221 1258999999886654221 1344455554443444446678998643 3
Q ss_pred HHHHHh
Q 000324 1516 DLGEWI 1521 (1665)
Q Consensus 1516 dl~~wl 1521 (1665)
++.+.+
T Consensus 366 d~~~i~ 371 (436)
T PRK11889 366 DMIEII 371 (436)
T ss_pred HHHHHH
Confidence 333333
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.21 Score=67.21 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
..+||-|.+|+.. ...+++|.|..|||||.+..--+...+.... +.. ++|+|+.|+..|.++.+++.+.++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhc
Confidence 4699999999864 3456999999999999997776666665421 222 899999999999999998885544
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.17 Score=66.87 Aligned_cols=81 Identities=21% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~~~ 1419 (1665)
..+|+-|.+|+- .+.++++|.|..|||||.+..--+...+..... .+-++++++.++..|..+.+++..+++. .+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-~~~~IL~ltft~~AA~em~eRL~~~lg~-~~ 269 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-QPEQILLLAFGRQAAEEMDERIRERLGT-ED 269 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-CHHHeEEEeccHHHHHHHHHHHHHhcCC-CC
Confidence 479999999885 345679999999999999987766665554211 1128999999999999999999877762 24
Q ss_pred cEEEEE
Q 000324 1420 MRVVEL 1425 (1665)
Q Consensus 1420 i~v~~l 1425 (1665)
+.|..+
T Consensus 270 v~v~TF 275 (684)
T PRK11054 270 ITARTF 275 (684)
T ss_pred cEEEeH
Confidence 444443
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.59 Score=58.33 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia 557 (1665)
..+++|+||+|+|||.++- .+++.+.... .+..++|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~-~v~~~l~~~~--------~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK-KVFEELEEIA--------VKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhc--------CCcEEEEEE
Confidence 3579999999999998764 3344443321 135677763
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.29 Score=55.91 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchHHHHHH
Q 000324 510 SADNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l 530 (1665)
...++++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999987754
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.2 Score=59.66 Aligned_cols=62 Identities=31% Similarity=0.310 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHH
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa 1403 (1665)
...+++-|.+.+..+...+.|+++++|||||||... -+++..+....+.. ++++|-.+.|+.
T Consensus 114 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~--ri~tiEd~~El~ 175 (299)
T TIGR02782 114 AGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTD--RVVIIEDTRELQ 175 (299)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCc--eEEEECCchhhc
Confidence 345778888888888888889999999999999986 44555554422334 899998888873
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.29 Score=63.49 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=25.7
Q ss_pred cccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.....+++||||+|.|... .+ ..+++.++..+..+.+|+.+
T Consensus 116 ~~gk~KVIIIDEad~Ls~~---A~----NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKS---AF----NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhCCcEEEEEECccccCHH---HH----HHHHHHHHhCCCCcEEEEEe
Confidence 3456799999999988531 12 23444445555667776654
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=93.64 E-value=3.3 Score=61.41 Aligned_cols=217 Identities=12% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
.|++-|.+++..++.+ +.-.+|.|+.|+|||.+. -+++..+.. .+.+++.++|+-.-+..+.+.....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~----------~G~~V~~lAPTgrAA~~L~e~~g~~ 497 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE----------QGYEIQIITAGSLSAQELRQKIPRL 497 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHhcch
Confidence 6899999999998876 456789999999999754 344444433 2568999999988776665442211
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHH
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (1665)
.. .+..+ ....... .-..|...| ..+. ..+..-++|||||+-++.. ..+..++...
T Consensus 498 A~----Ti~~~-------l~~l~~~-~~~~tv~~f---l~~~---~~l~~~~vlIVDEAsMl~~---~~~~~Ll~~a--- 553 (1960)
T TIGR02760 498 AS----TFITW-------VKNLFND-DQDHTVQGL---LDKS---SPFSNKDIFVVDEANKLSN---NELLKLIDKA--- 553 (1960)
T ss_pred hh----hHHHH-------HHhhccc-ccchhHHHh---hccc---CCCCCCCEEEEECCCCCCH---HHHHHHHHHH---
Confidence 00 00000 0000000 011122211 1111 2234568999999998852 2233333222
Q ss_pred HhhccCCeeEEEEccc--CCC--hHHHHHHHhccccCceEEecCCCcc-ccceEEEEeeecCchhHHHHHHHHHHHHHHH
Q 000324 654 IETTKEHIRLVGLSAT--LPN--YEDVALFLRVNLEKGLFYFDNSYRP-VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728 (1665)
Q Consensus 654 ~~~~~~~~riV~lSAT--l~n--~~dv~~~l~~~~~~~~~~f~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 728 (1665)
...+.|+|++.=+ +|. +-.+-..|... ......+....|. .++ . +.......++..+... ..
T Consensus 554 ---~~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~l~~i~rq~~~v--~---i~~~~~~~r~~~ia~~----y~ 620 (1960)
T TIGR02760 554 ---EQHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVDTKQQKASV--E---ISEAVDKLRVDYIASA----WL 620 (1960)
T ss_pred ---hhcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEEEeecccccCcce--e---eeccCchHHHHHHHHH----HH
Confidence 2456788877543 332 11122222221 1123333322211 111 1 1122222333333322 22
Q ss_pred HHh-CCCeEEEEecChhHHHHHHHHHHHHhhh
Q 000324 729 AVA-GKHQVLIFVHSRKETAKTARAIRDTALE 759 (1665)
Q Consensus 729 ~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (1665)
... .+..++|+..+.++...+...++.....
T Consensus 621 ~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~ 652 (1960)
T TIGR02760 621 DLTPDRQNSQVLATTHREQQDLTQIIRNALKQ 652 (1960)
T ss_pred hcccccCceEEEcCCcHHHHHHHHHHHHHHHH
Confidence 222 3446999999999999998888876543
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.17 Score=56.27 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=23.5
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~P 1398 (1665)
.++.+|+|+|||..+.-.+.+.... +. +++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 5789999999998775554444333 23 7787765
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.36 Score=61.43 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.6
Q ss_pred cEEEEccCCCchHHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~ 531 (1665)
.+|++||.|+|||.++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6999999999999988554
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.4 Score=62.46 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=25.1
Q ss_pred cceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
...+++||||+|.|... .. ..+++.++..+.++++|+.+
T Consensus 118 gr~KVIIIDEah~LT~~---A~----NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH---AF----NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH---HH----HHHHHHHHhcCCCeEEEEEE
Confidence 45799999999999642 12 23344455555667766654
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.11 Score=69.01 Aligned_cols=70 Identities=23% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
.+||-|.+|+.. ...+++|.|..|||||.+...-+...+.... +.. ++|+|+.|+..|.++..++.+.++
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhC
Confidence 489999999864 3456999999999999998877777775421 222 799999999999999999986665
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.3 Score=61.06 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=19.9
Q ss_pred HHHHHcCCC---cEEEEccCCCchHHHHHHH
Q 000324 504 YKSALSSAD---NILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 504 i~~~l~~~~---nvlv~APTGsGKT~~a~l~ 531 (1665)
+..++..+. .+|++||.|+|||.+|.+.
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344444443 3799999999999988543
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.36 Score=60.34 Aligned_cols=136 Identities=13% Similarity=0.211 Sum_probs=81.7
Q ss_pred EEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhccC-
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA-LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE- 1437 (1665)
Q Consensus 1360 vlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~Ptre-La~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l~- 1437 (1665)
.++.+..|||||.+..+.++..+....+.. +++++.|+.. |-.-++..+...+... |+....-....+.......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 678899999999999888888777742333 8999999988 6667777777555432 3321111111111222222
Q ss_pred CCcEEEECh-hhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1438 KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1438 ~~~IIV~TP-e~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+..|++..- +.... .+....++++.+|||..+.. ..++.+..|++. +...+.+.+|.++..
T Consensus 81 g~~i~f~g~~d~~~~-------ik~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKPNK-------LKSGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCChhH-------hhCcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCC
Confidence 334555553 22221 12234579999999999842 367777777543 122224677777665
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.2 Score=51.51 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHH
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q 1405 (1665)
+.++++.+|+|+|||..+...+. .+.. ... .++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~-~~~~--~~~--~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR-ELGP--PGG--GVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh-ccCC--CCC--CEEEECCEEccccC
Confidence 34699999999999998755433 2222 111 47777777554443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.19 Score=59.30 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
-.|..+++-|...+..+.....|+|+||.||||||+. |+.+...... .. ++|.+--+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~~------~e-RvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFIDS------DE-RVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCCC------cc-cEEEEeehhhh
Confidence 3588999999999999999999999999999999963 3444433222 22 78888777766
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.31 Score=55.90 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=17.9
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHH
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~ 537 (1665)
..++++||+|+|||..+. ++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~-ai~~~~~ 64 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK-AVSNHYL 64 (229)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 447999999999997663 4444443
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.26 Score=60.33 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=19.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHh
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLAL 538 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (1665)
..|+++-||||+|||.+.. .+++++..
T Consensus 42 p~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 3479999999999998764 44455543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.53 Score=60.57 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=25.8
Q ss_pred ccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
....+++||||+|.|... .. ..+++.++..+.++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~---Aa----NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH---AF----NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHH---HH----HHHHHhhccCCCCceEEEEe
Confidence 456799999999999632 12 23444455555667666654
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.41 Score=63.58 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=25.3
Q ss_pred cceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEE
Q 000324 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~l 666 (1665)
...+++||||||.|.. .... .+++.++..+..+++|+.
T Consensus 118 gk~KViIIDEAh~LT~---eAqN----ALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR---SSFN----ALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH---HHHH----HHHHHHhccCCCeEEEEE
Confidence 4578999999999952 1222 334555666667777775
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.15 Score=58.71 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=30.8
Q ss_pred cCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1461 YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1461 ~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.....+.||+||||.|..+. -..++.........+++++.+.-+.+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCChhh
Confidence 34567999999999996542 22333333445678899988876544
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.29 Score=50.27 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=27.2
Q ss_pred eeEEEEecccccccCC----chHHHHHHHHHHHHHhhccC---CeeEEEEccc
Q 000324 624 VKLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKE---HIRLVGLSAT 669 (1665)
Q Consensus 624 v~liIiDEaH~l~d~r----g~~le~iv~r~~~~~~~~~~---~~riV~lSAT 669 (1665)
-.+|+|||+|.+.... ...-..++..+...+..... ++.+|+.|.+
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 4799999999986532 33334444445444444333 3566666655
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.44 Score=55.43 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=38.9
Q ss_pred HcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHH
Q 000324 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (1665)
Q Consensus 1354 l~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~ 1411 (1665)
+..+.|+++.+|+|+|||..+..... .+.. .+ .-++++++.+|+.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~-~l~~---~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGN-ELLK---AG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHH-HHHH---cC--CeEEEEEHHHHHHHHHHHHh
Confidence 34677899999999999999854444 4444 23 56778899999888777665
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.36 Score=61.80 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=25.6
Q ss_pred cceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 622 ~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.+.+++||||||.|... .. ..+++.++..+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~---a~----naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH---SF----NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH---HH----HHHHHHHhccCCCeEEEEEE
Confidence 46799999999998631 22 23444455656677777654
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.58 Score=60.97 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=25.2
Q ss_pred ccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEE
Q 000324 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 621 l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~l 666 (1665)
....+++||||||.|.. .... .+++.++..+..+++|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~---~a~N----ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR---HSFN----ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH---HHHH----HHHHHHHcCCCCeEEEEe
Confidence 35679999999999863 1222 344445555566676665
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.34 Score=59.65 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=25.2
Q ss_pred cccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 620 ~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.....+++||||+|.+.. ...+. +++.++..+..+++|+.+
T Consensus 116 ~~~~~kviIIDEa~~l~~---~a~na----LLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 116 SKSRFKVYLIDEVHMLSR---HSFNA----LLKTLEEPPQHIKFILAT 156 (363)
T ss_pred ccCCceEEEEEChhhcCH---HHHHH----HHHHHhcCCCCeEEEEEc
Confidence 345678999999999853 12232 334445555666666654
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.1 Score=51.41 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
+.+++.+|+|+|||-.+.. +...+.+ .+. +++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH--cCC--cEEEEe
Confidence 3589999999999977653 3333333 122 677764
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.22 Score=64.40 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHHcCC-CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHH-HHHHHHhcCC
Q 000324 1340 KHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQG 1417 (1665)
Q Consensus 1340 ~~~~~iQ~qa~~~ll~~~-dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~-~~~~~~~~~~ 1417 (1665)
...+|+|.+...++-... ..|.++.++-+|||.+.+..+...+.. .+. .++++.||.+++.+.. .++.-.+...
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P~---~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DPG---PMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CCC---CEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478899999999886532 468999999999999777666555555 233 6999999999999876 3343233221
Q ss_pred CCcE--EEE---EeCCCccchhccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCC---CCchhHHHHHH
Q 000324 1418 LGMR--VVE---LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVS 1489 (1665)
Q Consensus 1418 ~~i~--v~~---l~G~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~---~~g~~~e~~~s 1489 (1665)
..++ +.. -.++.+...+.+.++.|.++....-..+ .-..++++++||++.+.. ..|..++.+..
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l--------~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL--------RSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc--------ccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 1111 110 1122222344455666666653322111 224689999999998843 34777788777
Q ss_pred HHHHHHhhcCCCCeEEEEcc-cCCChHHHHHHhcccCCcEEe
Q 000324 1490 RMRYIASQVENKIRIVALST-SLANAKDLGEWIGATSHGLFN 1530 (1665)
Q Consensus 1490 rl~~i~~~~~~~~riI~lSA-Tl~n~~dl~~wl~~~~~~~~~ 1530 (1665)
|.... .....++..|. |......+...........|.
T Consensus 163 R~~tf----~~~~K~~~~STPt~~~~~~I~~~~~~sdqr~~~ 200 (557)
T PF05876_consen 163 RTKTF----GSNRKILRISTPTIEGTSRIERLYEESDQRRYY 200 (557)
T ss_pred HHhhh----ccCcEEEEeCCCCCCCCCHHHHHHHhCCceEEE
Confidence 76543 23344444443 333334454444444433433
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.21 Score=59.85 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
..+++.|.+.+..++....|++|+||||||||+.. -+++..+.... ..-+++.+-...+|
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 34788999999999999999999999999999754 45555553211 13377877777776
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.49 Score=55.72 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=34.6
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
+..++.+++.||||+|||..+...+.+.+... +.+++|+.- -.-..++..++...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~----------g~~vl~iS~-E~~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH----------GVRVGTISL-EEPVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc----------CceEEEEEc-ccCHHHHHHHHHHH
Confidence 44567899999999999987766555544331 346787753 22344555555443
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.91 Score=55.02 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=66.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEECC
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~ltGd 587 (1665)
....++++||||+|||+.+.-........ +.++.++. |.|.-|.++...+.+. +++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-----------g~~V~lItaDtyR~gAveQLk~yae~---lgvpv~----- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-----------NRTVGFITTDTFRSGAVEQFQGYADK---LDVELI----- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCccCccHHHHHHHHhhc---CCCCEE-----
Confidence 45678999999999997664444332222 12343332 4555555554444432 233221
Q ss_pred CcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEc
Q 000324 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (1665)
Q Consensus 588 ~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lS 667 (1665)
.+.+|+.+....+... ..+..++|+||=+=..+. -+..+..+........+..-++.+|
T Consensus 266 -------------~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~~-----d~~~l~EL~~l~~~~~p~~~~LVLs 324 (407)
T PRK12726 266 -------------VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNYL-----AEESVSEISAYTDVVHPDLTCFTFS 324 (407)
T ss_pred -------------ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcc-----CHHHHHHHHHHhhccCCceEEEECC
Confidence 2245665422222211 123468999998865431 2223333333333333444456778
Q ss_pred ccCCChHHHHHHHh
Q 000324 668 ATLPNYEDVALFLR 681 (1665)
Q Consensus 668 ATl~n~~dv~~~l~ 681 (1665)
||. ...++..++.
T Consensus 325 ag~-~~~d~~~i~~ 337 (407)
T PRK12726 325 SGM-KSADVMTILP 337 (407)
T ss_pred Ccc-cHHHHHHHHH
Confidence 875 4556666554
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.24 Score=59.06 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
..+++-|.+.+..++..+.|++++||||||||+.. -+++..+.... ...+++++--..++
T Consensus 115 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~--------~~~ri~tiEd~~El 174 (299)
T TIGR02782 115 GIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKND--------PTDRVVIIEDTREL 174 (299)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccC--------CCceEEEECCchhh
Confidence 35778888899999988899999999999999855 45555554310 13478888887776
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.2 Score=60.16 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHH
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raL 562 (1665)
..+++.|.+.+..++..+.|++++||||||||..+ -+++..+.... ...++++|-.+.+|
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 34778899999999999999999999999999643 45555442111 13478888877766
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.92 Score=57.33 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=32.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~ 570 (1665)
.+++.||+|+|||... .++.+.+.... .+.+++|+.+ ..+..++...+
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~~--------~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESNF--------SDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHhC--------CCCeEEEEEH-HHHHHHHHHHH
Confidence 4899999999999655 56666655421 2457888766 45666555544
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=1 Score=57.91 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhh
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~ 574 (1665)
.|+|+|...+..+....- .++..+=..|||.++...++...... .+..+++++|++.-|..+++.++...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~~---------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCFN---------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 588999999987654444 45777889999988765444433322 13489999999999999998887655
Q ss_pred c
Q 000324 575 Q 575 (1665)
Q Consensus 575 ~ 575 (1665)
.
T Consensus 129 e 129 (534)
T PHA02533 129 E 129 (534)
T ss_pred H
Confidence 4
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.7 Score=54.42 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=65.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHHhhccCCcEEEEEECCC
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1665)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~ia--P~raLa~q~~~~~~~~~~~~gi~V~~ltGd~ 588 (1665)
+..+++.||||+|||+.+...+....... .+.++.+|. |.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---------~g~~V~li~~D~~r~~a~eqL~~~a~~~---~vp~~------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---------GKKKVALITLDTYRIGAVEQLKTYAKIM---GIPVE------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---------CCCeEEEEECCccHHHHHHHHHHHHHHh---CCceE------
Confidence 45789999999999976654333332111 122444432 45555556666665533 33221
Q ss_pred cccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHhhccCCeeEEEEcc
Q 000324 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 589 ~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riV~lSA 668 (1665)
.+.+|+.+....+. +...++||||.+-....+ ...++. +..++.. ...+...++.+||
T Consensus 283 ------------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d-~~~~~~-L~~ll~~--~~~~~~~~LVl~a 340 (424)
T PRK05703 283 ------------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRD-KRLIEE-LKALIEF--SGEPIDVYLVLSA 340 (424)
T ss_pred ------------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCC-HHHHHH-HHHHHhc--cCCCCeEEEEEEC
Confidence 12344444333322 224699999999654321 111111 2222220 1123345777999
Q ss_pred cCCChHHHHHHHh
Q 000324 669 TLPNYEDVALFLR 681 (1665)
Q Consensus 669 Tl~n~~dv~~~l~ 681 (1665)
|. ...++.....
T Consensus 341 ~~-~~~~l~~~~~ 352 (424)
T PRK05703 341 TT-KYEDLKDIYK 352 (424)
T ss_pred CC-CHHHHHHHHH
Confidence 96 4455555443
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.19 Score=65.10 Aligned_cols=164 Identities=12% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHH-HHHH
Q 000324 494 TQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-GNLS 571 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~-~~~~ 571 (1665)
...+|+|.+.++++-... +.|.++.++-+|||.+.+-.+...+.. ....++|+.||..+|.... .+|.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~----------~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ----------DPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe----------CCCCEEEEEEcHHHHHHHHHHHHH
Confidence 367899999998754332 468999999999999665554444332 3456999999999999876 4555
Q ss_pred HhhccCC-cE--EEE---EECCCcccHhhhccccEEEeChhhHHHHHhhcCCCccccceeEEEEeccccccc---CCchH
Q 000324 572 NRLQMYD-VK--VRE---LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPV 642 (1665)
Q Consensus 572 ~~~~~~g-i~--V~~---ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d---~rg~~ 642 (1665)
..+.... ++ +.. -.++.+.......+..+.++.-. +.....-..++++++||++.... ..|..
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~--------S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp 156 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGAN--------SPSNLRSRPARYLLLDEVDRYPDDVGGEGDP 156 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCC--------CCcccccCCcCEEEEechhhccccCccCCCH
Confidence 5544221 11 111 11222233333334445554322 11111223478999999999843 57888
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEE-cccCCChHHHHHH
Q 000324 643 LESIVARTVRQIETTKEHIRLVGL-SATLPNYEDVALF 679 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riV~l-SATl~n~~dv~~~ 679 (1665)
++..-.|+.. .....+++.. |.|+.....+...
T Consensus 157 ~~la~~R~~t----f~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 157 VELAEKRTKT----FGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred HHHHHHHHhh----hccCcEEEEeCCCCCCCCCHHHHH
Confidence 8888887743 2233444443 4455432333333
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=1 Score=54.38 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=66.1
Q ss_pred cEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcc--cHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchhcc
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP--LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1359 nvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~P--treLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~~l 1436 (1665)
-+++.+|+|+|||.+..-.+ ..+.. .+. +++++.. .|.-+.++...+...+ |+.+.. +....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~----- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA----- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC-----
Confidence 47789999999998754433 23333 222 5666653 2343333344444333 344321 11111
Q ss_pred CCCcEEEEChhh-HHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1437 EKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1437 ~~~~IIV~TPe~-l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.|.. +...++.. .....++|+||.+.++.... ..+..|+.+.....+...++.++|+..+
T Consensus 206 --------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 --------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred --------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1221 11222211 12457899999999886432 2556666666656667778888998754
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.15 Score=47.54 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=33.8
Q ss_pred HHhcccEEEEcCCCCHHHHHHHHHHHhcCCceEEEC
Q 000324 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1630 ~~l~~gI~~~H~~m~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+..+..+..+||+++..+|..+++.|++|..+||||
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~ 39 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIA 39 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEe
Confidence 557888999999999999999999999999999997
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.8 Score=52.58 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCcEEEECCCCChHHHH-HHHHHHHHHHhhcCCCCeEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccchh
Q 000324 1357 DDNVLVAAPTGSGKTIC-SEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~-a~l~il~~l~~~~~~~~~r~l~I~P-treLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~~ 1434 (1665)
+..+.+++|||.|||.. |=||....... .... -++|-.- .|-=|.++.+ .+++.+|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~k--VaiITtDtYRIGA~EQLk----~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKK--VAIITTDTYRIGAVEQLK----TYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcc--eEEEEeccchhhHHHHHH----HHHHHhCCce------------
Confidence 55689999999999988 44444333122 1221 2333332 3333333333 3333333433
Q ss_pred ccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCCh
Q 000324 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (1665)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n~ 1514 (1665)
.++-+|.-|..-+.. +++.++|.||=+-+-..+ ...++.|..+.....+--..+.+|||. ..
T Consensus 264 ------~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs~~D-----~~~i~el~~~~~~~~~i~~~Lvlsat~-K~ 325 (407)
T COG1419 264 ------EVVYSPKELAEAIEA------LRDCDVILVDTAGRSQYD-----KEKIEELKELIDVSHSIEVYLVLSATT-KY 325 (407)
T ss_pred ------EEecCHHHHHHHHHH------hhcCCEEEEeCCCCCccC-----HHHHHHHHHHHhccccceEEEEEecCc-ch
Confidence 445567766655543 556788988877543222 235667777766655566678899996 45
Q ss_pred HHHHHHh
Q 000324 1515 KDLGEWI 1521 (1665)
Q Consensus 1515 ~dl~~wl 1521 (1665)
+|+-+-+
T Consensus 326 ~dlkei~ 332 (407)
T COG1419 326 EDLKEII 332 (407)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.67 Score=53.45 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
+..++|.+|+|+|||+.+.-.+...+.+ +. +++|++ +.+-..++.+.+. .|+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs-~ee~~~~i~~~~~-~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVA-LEEHPVQVRRNMA-QFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEE-eeCCHHHHHHHHH-HhC
Confidence 4568999999999999887666665543 33 788887 5566666666655 443
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.1 Score=51.16 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q 000324 1356 TDDNVLVAAPTGSGKTICSEF 1376 (1665)
Q Consensus 1356 ~~dnvlv~ApTGSGKTl~a~l 1376 (1665)
...++++.+|+|+|||..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 345799999999999987643
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.28 Score=66.21 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHh
Q 000324 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~ 573 (1665)
..||+-|.+++.. ...+++|.|..|||||.+..--|.+.+.... ...-+|++++-|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999863 3467999999999999988777777665421 12347999999999999999999876
Q ss_pred hccCCcEEEEEECCCcccHhhhccccEEEeChhhH-HHHHhh
Q 000324 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 574 ~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
++. ....+.|+|-..| ..++|.
T Consensus 73 ~~~-------------------~~~~~~i~TFHs~~~~iLr~ 95 (726)
T TIGR01073 73 LGP-------------------VAEDIWISTFHSMCVRILRR 95 (726)
T ss_pred hcc-------------------ccCCcEEEcHHHHHHHHHHH
Confidence 431 0135789999886 344444
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.2 Score=57.01 Aligned_cols=140 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHHhhccC--C
Q 000324 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY--D 578 (1665)
Q Consensus 501 ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~~~~~~--g 578 (1665)
+...-..+..+- .+++.|==.|||.+...-|.-.+... .+.+|+|++|.+..++.+++++..++... +
T Consensus 245 s~~~~~~fkqk~-tVflVPRR~GKTwivv~iI~~ll~s~---------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~ 314 (738)
T PHA03368 245 SDAAVRHFRQRA-TVFLVPRRHGKTWFLVPLIALALATF---------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGA 314 (738)
T ss_pred cHHHHHHhhccc-eEEEecccCCchhhHHHHHHHHHHhC---------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcch
Q ss_pred cEEEEEECCCcc--cHhhhccccEEEe-ChhhHHHHHhhcCCCccccceeEEEEecccccccCCchHHHHHHHHHHHHHh
Q 000324 579 VKVRELSGDQTL--TRQQIEETQIIVT-TPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIE 655 (1665)
Q Consensus 579 i~V~~ltGd~~~--~~~~~~~~~IiV~-TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le~iv~r~~~~~~ 655 (1665)
-.+....| ..+ .-..-....|.++ + +......=+.++++|||||+.+. ...+..++--+
T Consensus 315 ~~v~~vkG-e~I~i~f~nG~kstI~FaSa---------rntNsiRGqtfDLLIVDEAqFIk---~~al~~ilp~l----- 376 (738)
T PHA03368 315 SRVDHVKG-ETISFSFPDGSRSTIVFASS---------HNTNGIRGQDFNLLFVDEANFIR---PDAVQTIMGFL----- 376 (738)
T ss_pred hheeeecC-cEEEEEecCCCccEEEEEec---------cCCCCccCCcccEEEEechhhCC---HHHHHHHHHHH-----
Q ss_pred hccCCeeEEEEccc
Q 000324 656 TTKEHIRLVGLSAT 669 (1665)
Q Consensus 656 ~~~~~~riV~lSAT 669 (1665)
...+.++|.+|-|
T Consensus 377 -~~~n~k~I~ISS~ 389 (738)
T PHA03368 377 -NQTNCKIIFVSST 389 (738)
T ss_pred -hccCccEEEEecC
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.2 Score=51.18 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHc--CCCcEEEEccCCCchHHHHH
Q 000324 496 LNRVQSRVYKSALS--SADNILLCAPTGAGKTNVAV 529 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~ 529 (1665)
.|.....++..+.. +..+++++||+|+|||..+.
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 35555555554432 23579999999999998664
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.5 Score=50.51 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=23.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~ 1397 (1665)
.++++++|+|+|||-.+. ++...+.. .+. +++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~--~~~--~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ--RGE--PAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh--CCC--cEEEee
Confidence 468899999999998743 44444443 122 677765
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.3 Score=50.93 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCccEEEeecccccCCCCchhHHHHHHHHHHHHhhcCCCCeEEEEcccCCC
Q 000324 1462 VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1462 l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+.+.+++|+||+|.+..... .-+.+..-++.+. ..+.+++.+|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~---~~~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEE-WELAIFDLFNRIK---EQGKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChH-HHHHHHHHHHHHH---HcCCcEEEEeCCCCh
Confidence 34678999999998864321 1122333333332 234566677776544
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.25 Score=66.49 Aligned_cols=83 Identities=24% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhc-CCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1339 f~~~~~iQ~qa~~~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~-~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
+..+||-|.+|+.. ...+++|.|..|||||.+..--+...+.... +.. ++|+|+-|+..|.++.+++.+.++..
T Consensus 7 l~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 7 LDSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HHhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC
Confidence 34699999999864 3457999999999999998777766665321 222 89999999999999999998666532
Q ss_pred -CCcEEEEEe
Q 000324 1418 -LGMRVVELT 1426 (1665)
Q Consensus 1418 -~~i~v~~l~ 1426 (1665)
.++.|..++
T Consensus 82 ~~~~~i~TfH 91 (721)
T PRK11773 82 QGGMWVGTFH 91 (721)
T ss_pred CCCCEEEcHH
Confidence 234444443
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.76 Score=55.54 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHcCCC---cEEEEccCCCchHHHHHHH
Q 000324 496 LNRVQSRVYKSALSSAD---NILLCAPTGAGKTNVAVLT 531 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~l~ 531 (1665)
+.|+|...+..++..+. .+|++||.|.|||..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 46888888888876643 5899999999999877543
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.99 Score=52.14 Aligned_cols=137 Identities=23% Similarity=0.301 Sum_probs=70.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEc---ccHHHHHHHHHHHHHHhcCCCCcEEE-EEeCCCcc-
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA---PLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAM- 1431 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~---PtreLa~Q~~~~~~~~~~~~~~i~v~-~l~G~~~~- 1431 (1665)
++-++|+|++|+|||..+.--+.+...+. +. +++|+. |..+++..... ... ++... ...|....
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~--~vly~s~E~~~~~~~~r~~~----~~~---~~~~~~~~~~~~~~~ 81 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GK--PVLFFSLEMSKEQLLQRLLA----SES---GISLSKLRTGSLSDE 81 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC--ceEEEeCCCCHHHHHHHHHH----Hhc---CCCHHHHhcCCCCHH
Confidence 45689999999999988765555555441 22 677776 34444443322 111 11110 01111111
Q ss_pred c-------hhccCCCcEEE-----EChhhHHHHHHhhhccccCCCccEEEeecccccCCCC-----chhHHHHHHHHHHH
Q 000324 1432 D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-----GPVLEVIVSRMRYI 1494 (1665)
Q Consensus 1432 ~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~-----g~~~e~~~srl~~i 1494 (1665)
. ...+....+.| .|++.+...++..... .++++||||=++.+.... ...+..++.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~l 158 (242)
T cd00984 82 DWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLL 158 (242)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 01112223443 2445555444443221 278999999999774321 22344566677766
Q ss_pred HhhcCCCCeEEEEcc
Q 000324 1495 ASQVENKIRIVALST 1509 (1665)
Q Consensus 1495 ~~~~~~~~riI~lSA 1509 (1665)
...+ ++.++++|-
T Consensus 159 a~~~--~~~ii~~~q 171 (242)
T cd00984 159 AKEL--NVPVIALSQ 171 (242)
T ss_pred HHHh--CCeEEEecc
Confidence 5543 566666664
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.73 Score=54.67 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.9
Q ss_pred cEEEEccCCCchHHHHHH
Q 000324 513 NILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 513 nvlv~APTGsGKT~~a~l 530 (1665)
++++.||+|+|||.+|..
T Consensus 60 ~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALR 77 (284)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 699999999999998843
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.76 Score=53.88 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHH
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~ 1406 (1665)
..++++.+|+|+|||..+. +|...+... .+. .++|+. ..++..+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-~g~--~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-KGV--PVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-cCc--eEEEEE-HHHHHHHH
Confidence 5679999999999998773 555555541 122 566654 44555443
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.42 Score=61.16 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcC----C----CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhc
Q 000324 1344 PIQTQVFTVLYNT----D----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1344 ~iQ~qa~~~ll~~----~----dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~ 1415 (1665)
|+|.-.+..++.- + ..+++..|=|.|||.......+..+.-.+ ..+..+++.+++++-+..+++.++..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6788777777731 1 24888899999999987666665554422 2233899999999999999999986554
Q ss_pred C
Q 000324 1416 Q 1416 (1665)
Q Consensus 1416 ~ 1416 (1665)
.
T Consensus 80 ~ 80 (477)
T PF03354_consen 80 A 80 (477)
T ss_pred h
Confidence 3
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.1 Score=51.64 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHc--CCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Q 000324 1343 NPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (1665)
Q Consensus 1343 ~~iQ~qa~~~ll~--~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~P 1398 (1665)
|.....++..+.. +..++++++|+|+|||-.+.. +...+.. .+. +++|+.-
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a-~~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHA-ACAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH-HHHHHHh--CCC--eEEEEEH
Confidence 3334444444332 235799999999999987653 3333333 122 6666643
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.54 Score=56.34 Aligned_cols=27 Identities=33% Similarity=0.648 Sum_probs=20.5
Q ss_pred HHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000324 504 YKSALSSA--DNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 504 i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (1665)
+..++.++ .++|+.||.|+|||.+|.+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 44455543 4799999999999998854
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.77 Score=52.95 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=36.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHH
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~g~~~~~~~kil~iaP~raLa~q~~~~~~~ 572 (1665)
.+..++|.||+|+|||..++..+...+.. +-+++|++- -+-..++.+++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-----------ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------GEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCcEEEEEe-eCCHHHHHHHHHH
Confidence 35679999999999999888777766633 336888873 4455566665543
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.35 Score=63.31 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCHHHHHHHH---HHHcCCCcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000324 1341 HFNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1341 ~~~~iQ~qa~~---~ll~~~dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~~~~~~~~~~ 1417 (1665)
.+.++|..-+. .+|+++=|-|+.-.+|-|||+.-.-- +.++.......| --+||||+--|.+ |...|..-
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsL-itYLmE~K~~~G-P~LvivPlstL~N-----W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISL-ITYLMEHKQMQG-PFLIIVPLSTLVN-----WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHH-HHHHHHHcccCC-CeEEeccccccCC-----chhhcccc
Confidence 66777776554 46778888999999999999986443 344444333333 3688999977765 44344322
Q ss_pred -CCcEEEEEeCCCccch----h-ccCCCcEEEEChhhHHHHHHhhhccccCCC--ccEEEeecccccCC
Q 000324 1418 -LGMRVVELTGETAMDL----K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQ--VSLFIIDELHLIGG 1478 (1665)
Q Consensus 1418 -~~i~v~~l~G~~~~~~----~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~--v~llViDEaH~l~~ 1478 (1665)
..+..+.+.|...... + ...+.+|+++|-+-+.. .+..++. ..++||||-|+|-.
T Consensus 467 aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik------dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK------DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC------CHHHHhccCCcceeecccccccc
Confidence 2344555555432221 1 22456999999876532 1222333 46899999999964
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.66 Score=59.98 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000324 501 SRVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (1665)
Q Consensus 501 ~~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (1665)
.+.+..++.++ ..+|+++|.|+|||.++.+.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455555553 368899999999999886544
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.89 Score=57.79 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=29.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHHHHhhcCCCCeEEEEEcccHHHHHHHHH
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (1665)
Q Consensus 1358 dnvlv~ApTGSGKTl~a~l~il~~l~~~~~~~~~r~l~I~PtreLa~Q~~~ 1408 (1665)
..+++.+|+|+|||..+.. +...+....+.. +++|+ +..++..+...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~--~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNA--KVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCC--eEEEE-EHHHHHHHHHH
Confidence 3589999999999988744 444444422233 67776 44555554433
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.3 Score=53.24 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHHH-HhhcCCCCeEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCccch
Q 000324 1357 DDNVLVAAPTGSGKTICSEFAILRNH-QKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (1665)
Q Consensus 1357 ~dnvlv~ApTGSGKTl~a~l~il~~l-~~~~~~~~~r~l~I~--PtreLa~Q~~~~~~~~~~~~~~i~v~~l~G~~~~~~ 1433 (1665)
+..+++.+|||+|||.+..--+.... .. .+. ++.+|. |.+.-+.++...|...+ ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~----------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPV----------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCC--eEEEEECCccHHHHHHHHHHHHHHh----CCce-----------
Confidence 34688999999999987653333222 22 122 444433 33443444444444322 2222
Q ss_pred hccCCCcEEEEChhhHHHHHHhhhccccCCCccEEEeecccccCCCCchhHHHHHHHHHHHHh-hcCCCCeEEEEcccCC
Q 000324 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS-QVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llViDEaH~l~~~~g~~~e~~~srl~~i~~-~~~~~~riI~lSATl~ 1512 (1665)
.++.+|..+...++. +.+.++||||.+-+...+. . .+..+..+.. .......++.+|||..
T Consensus 282 -------~~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-~----~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-R----LIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred -------EccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-H----HHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 122345555444443 3467999999987643221 1 2333333333 1122344778899864
Q ss_pred C
Q 000324 1513 N 1513 (1665)
Q Consensus 1513 n 1513 (1665)
.
T Consensus 344 ~ 344 (424)
T PRK05703 344 Y 344 (424)
T ss_pred H
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1665 | ||||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 0.0 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 0.0 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 9e-37 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 3e-28 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 1e-34 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 3e-24 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 8e-31 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 8e-26 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 3e-14 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 4e-13 | ||
| 3im1_A | 328 | Structure Of The C-Terminal Sec63 Unit Of Yeast Brr | 2e-12 | ||
| 2q0z_X | 339 | Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. | 3e-12 | ||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 2e-11 | ||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 2e-11 | ||
| 3hib_A | 318 | Crystal Structure Of The Second Sec63 Domain Of Yea | 2e-10 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 1e-06 |
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 | Back alignment and structure |
|
| >pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 | Back alignment and structure |
|
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
|
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 715 bits (1846), Expect = 0.0
Identities = 173/770 (22%), Positives = 303/770 (39%), Gaps = 90/770 (11%)
Query: 477 IKISE--MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
+++ E + E + K G+ Q+ KS + N L+ PT +GKT +A + +
Sbjct: 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAM 60
Query: 533 LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
+ ++ K VY+ P+KAL E + ++V +GD
Sbjct: 61 VHRILTQG----------GKAVYIVPLKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKD 109
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
+ + + II+ T EK+D + R ++ + VK+L+ DEIHL+ +RG LE I+A
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHM- 166
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG----I 707
+++GLSAT+ N E++A +L L + +RPV L +
Sbjct: 167 ------LGKAQIIGLSATIGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVT 214
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ RF +L Y+ + K LIFV+ R++ + A + T
Sbjct: 215 WEDGSIDRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTK---- 267
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
E E+ S + + L + G A HHAG+ R +R LVE+ F G ++ +V+T
Sbjct: 268 PEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
TL+ G+N PA VII+ Y+ + +++ QMLGRAGRP+YD GEGII++
Sbjct: 328 PTLSAGINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385
Query: 888 HSELR--YYLSLMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
+ R + + + SQ S L Q+ A I +E +I T+
Sbjct: 386 SDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY- 444
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+ Y L + + L N ++ + LG
Sbjct: 445 --QRKDTYSL---------------EEKIRNILYFLLENEFIEI-SLEDKIRPLSLGIRT 486
Query: 1004 SYYYISHGTISTYNEHLKPTMGDI---ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
+ YI T + + ++ + D + L SL+ + + E L +
Sbjct: 487 AKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFK 546
Query: 1061 -------------IPVKESLEEPSAKINVLLQAYISQLKLEGLS-----LTSDMVFITQS 1102
P E + K ++L A+I+++ + D+ I ++
Sbjct: 547 DRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVET 606
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A L+ +L EI G ++ + L V + PL Q + L
Sbjct: 607 AEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG 666
Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTV 1212
F D+S EL++ +G + + +F + +P T+
Sbjct: 667 F--RSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVKISEKPRKSTL 714
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = 3e-89
Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 38/355 (10%)
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
+ L + + L+ G + F P Q + N L++ PT SGKT+
Sbjct: 3 VDELRVDERIKSTLKER-------GIESFYPPQAEALKSGILEGKNALISIPTASGKTLI 55
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+E A++ + G +AVYI PL+ALA+E++++++ + + +G+RV TG+
Sbjct: 56 AEIAMVH---RILTQG-GKAVYIVPLKALAEEKFQEFQ-DWEK-IGLRVAMATGDYDSKD 109
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
+ L K III+T EK+D+L R +++ V + + DE+HLIG + G LEVI++ M
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
K +I+ LS ++ N ++L EW+ A RPV L + +
Sbjct: 168 -------GKAQIIGLSATIGNPEELAEWLNAE-----LIVSDWRPVKLRRGVFYQGFVTW 215
Query: 1553 E----ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
E R + + + AI + K AL+FV R+ A++L +
Sbjct: 216 EDGSIDRFSSWEELVYDAIRKK----KGALIFVNMRRKAERVALELSKKVKSLLTKPEIR 271
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
L E + +N E L +R GV + H GL + ++ +V F G IK
Sbjct: 272 AL--NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV 324
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 683 bits (1765), Expect = 0.0
Identities = 184/761 (24%), Positives = 323/761 (42%), Gaps = 116/761 (15%)
Query: 469 PLDPNEKLIKISEM--PEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGK 524
L+ + + I ++ P K G+ +LN Q+ K L + +LL +PTG+GK
Sbjct: 2 GLE--LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGK 59
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584
T +A + I+ L N K +YV P++AL E ++ KV
Sbjct: 60 TLIAEMGIISFLLKNG----------GKAIYVTPLRALTNEKYLTFK-DWELIGFKVAMT 108
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL 643
SGD ++ II+TT EK D + R + + V ++DE+H L+D RGPV+
Sbjct: 109 SGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVV 166
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ES+ R + L+ LSAT+ NY+ +A +L ++RPVPL +
Sbjct: 167 ESVTIRA--------KRRNLLALSATISNYKQIAKWLGAEP------VATNWRPVPLIEG 212
Query: 704 YIGIQVKK----------PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAI 753
I + KK ++ + + + +++ QVL+F +SRK TA I
Sbjct: 213 VIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI 272
Query: 754 RD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809
+ +L+ + L LK+ E + LK L+ G A HHAG+++ R
Sbjct: 273 ANYMNFVSLDENALSEILKQLDDIEEGGS-----DEKELLKSLISKGVAYHHAGLSKALR 327
Query: 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-KGAWTELSPLDIMQML 868
L+E+ F ++V+V+T TLA GVNLPA TVII +N + G + E+ ++ QM
Sbjct: 328 DLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387
Query: 869 GRAGRPQYDSYGEGIIITGHSELR---YYLSLMNQQLPIESQFVSK--LADQLNAEIVLG 923
GRAGRP +D GE I++ E + +++ PIES+ S+ L +
Sbjct: 388 GRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAE 447
Query: 924 TVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNN 983
+ K+ N+ + L +++ A L ++
Sbjct: 448 GNLSEKQLENFAYESLLAKQLVDV-----------------------YFDRAIRWLLEHS 484
Query: 984 LVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELC--RLFSLSEEFKY 1041
+K + F +T+ G+ + YI+ T + L+ EL L + + +
Sbjct: 485 FIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542
Query: 1042 VTVRQDEKMELAKLLDRVPIPV----KESLEEPSAKINVLLQAYISQLKLEGLSLTS--- 1094
V+V ++E+ EL +LL+ + + +E S IN L A I + ++ + +
Sbjct: 543 VSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILS 602
Query: 1095 -------DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQF 1147
D+ + ++ L + + + + + A+K L+ V
Sbjct: 603 KYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRD------------ 650
Query: 1148 NGIPNEILMKLEKKDFAWERY---YDLSPQELGELIRFPKM 1185
GI E+L ++ +R Y+ +ELG+++ P
Sbjct: 651 -GIKEELLELVQISGVGRKRARLLYNNGIKELGDVVMNPDK 690
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = 5e-98
Identities = 98/363 (26%), Positives = 173/363 (47%), Gaps = 39/363 (10%)
Query: 1317 LDLQPLPVTALRNP--LYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
L+L+ +P+ L+ P + E + +G K NP QT+ + +L+ +PTGSGKT+
Sbjct: 3 LELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLI 62
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+E I+ + G +A+Y+ PL AL E+Y + K + +G +V +G+ D
Sbjct: 63 AEMGIISF---LLKNG-GKAIYVTPLRALTNEKYLTF--KDWELIGFKVAMTSGDYDTDD 116
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
L+ III+T EK D+L R + ++ +V+ F++DELH + GPV+E + R +
Sbjct: 117 AWLKNYDIIITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-- 1550
++ALS +++N K + +W+GA RPVPL + +
Sbjct: 175 R--------RNLLALSATISNYKQIAKWLGA-----EPVATNWRPVPLIEGVIYPERKKK 221
Query: 1551 --------NFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602
N ++ + +KN LVF SRK TA+ + Y +
Sbjct: 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLSKN-GQVLVFRNSRKMAESTALKIANYMNFVS 280
Query: 1603 DQKSAFLLWPAEEVEPFIDNIQE--EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
++A L ++++ + + E+LK+ + GV Y H GL+K ++++ F KI
Sbjct: 281 LDENA-LSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI 339
Query: 1661 KIC 1663
K+
Sbjct: 340 KVI 342
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 668 bits (1725), Expect = 0.0
Identities = 166/715 (23%), Positives = 301/715 (42%), Gaps = 90/715 (12%)
Query: 477 IKISEMPEWAQPAF------KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
+K+ E+ E +G+ +L Q+ + S N+LL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEM 59
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
++++ K +YV P++AL E + + + +++ +GD
Sbjct: 60 AMVREAIKGG-----------KSLYVVPLRALAGEKYESFK-KWEKIGLRIGISTGDYES 107
Query: 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVAR 649
+ + + IIVTT EK D + R + + V L++DEIHLL RG LE +V +
Sbjct: 108 RDEHLGDCDIIVTTSEKADSLIRNRAS--WIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
R + +R++GLSAT PN ++A +L + + + +RPVPL + +
Sbjct: 166 MRR----MNKALRVIGLSATAPNVTEIAEWLDADY------YVSDWRPVPLVEGVLCEGT 215
Query: 710 KKPL-QRFQLMNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
+ F + +E++V VA VL+F +R+ KTA + ++
Sbjct: 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI------TAKY 269
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
++ + + + IL+ + S L + + G A HHAG+ G R++VED F G+++V+V+
Sbjct: 270 VENEGLEKAILEE-NEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVA 328
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
T TLA GVNLPA VI++ ++ G + + QM GRAGRP D GE III
Sbjct: 329 TPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385
Query: 887 GHSELRYYLS--LMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
G + + + + I S+ + L + I G + +E ++ T+ +
Sbjct: 386 GKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFK 445
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
+ + + + L+ +V ++ + T LG +
Sbjct: 446 QNEISL--------------------SYELERVVRQLENWGMVV---EAAHLAPTKLGSL 482
Query: 1003 ASYYYISHGTISTYNEHL-KPTMGDIELCRLFSLSEEFKYVTVRQDEK------MELAKL 1055
S YI T +++ L + + DI L + + + +TVR+ + L K
Sbjct: 483 VSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKE 542
Query: 1056 LDRVPIP--VKESLEEPSAKINVLLQAYISQLKLEGLSLT-----SDMVFITQSAGRLLR 1108
L P V+ K + L+ +I + + + D+ I ++A L
Sbjct: 543 LSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSN 602
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163
A+ I + G ++ L++ + + L + I KL
Sbjct: 603 AMNRIAEEVGNTSVSG----LTERIKHGVKEELLELVRIRHIGRVRARKLYNAGI 653
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = 3e-93
Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 34/349 (9%)
Query: 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFA 1377
+ V L+ G + P Q + ++ + N+L+A PT +GKT+ +E A
Sbjct: 9 SISSYAVGILKEE-------GIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMA 60
Query: 1378 ILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
++R K +++Y+ PL ALA E+Y ++ K+ + +G+R+ TG+ + L
Sbjct: 61 MVREAIKGG-----KSLYVVPLRALAGEKYESFK-KW-EKIGLRIGISTGDYESRDEHLG 113
Query: 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIAS 1496
II++T EK D+L R +++ VS ++DE+HL+ + G LE++V++MR +
Sbjct: 114 DCDIIVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171
Query: 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG-VDITNFEAR 1555
+R++ LS + N ++ EW+ A + RPVPL + + F+
Sbjct: 172 ----ALRVIGLSATAPNVTEIAEWLDAD-----YYVSDWRPVPLVEGVLCEGTLELFDGA 222
Query: 1556 MQAMTKPTFTAIVQHAKNE-KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614
+ F +V+ E LVF +R+ TAV L ++ + + E
Sbjct: 223 FSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEE 282
Query: 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKIC 1663
+ L +R G + H GL + VV F G IK+
Sbjct: 283 N-----EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVV 326
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 2e-60
Identities = 74/332 (22%), Positives = 142/332 (42%), Gaps = 19/332 (5%)
Query: 984 LVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043
+ +LG IA+YYYI++ TI ++ L L + S + E++ +
Sbjct: 3 HHHHHHSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIP 62
Query: 1044 VRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102
+R E L +L +VP + +P K N+LLQA++S+++L L SD I
Sbjct: 63 IRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSK 121
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A RL++A +++ GW A A+ L++MVT+ MWS + L+Q +E + + K
Sbjct: 122 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG 181
Query: 1163 F-AWERYYDLSPQELGELI-RFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
+ ++ +E L+ + +F +++P + L+ V + +
Sbjct: 182 VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL 241
Query: 1221 PDFLWDDKVHGYV----------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT 1270
+++V G V E +WV++ D ++ + L+++ L+F
Sbjct: 242 VQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFV 298
Query: 1271 VPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
P Y + +SD ++G S
Sbjct: 299 AP--ATGAHNYTLYFMSDAYMGCDQEYKFSVD 328
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 187 bits (475), Expect = 1e-52
Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 21/327 (6%)
Query: 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
+ G IAS+Y +S TI ++ L T + + S + EF+ V +R+ ++
Sbjct: 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRA 65
Query: 1051 ELAKLLDRVPIPVKE--SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
L KL R+P+ E S S K+ +LLQAY S+L+L +D+ I + L+
Sbjct: 66 LLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLIN 124
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA-WER 1167
+ +I+ G+ A A++L++M+ + +W V PLRQ N+IL K ++ +
Sbjct: 125 VVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYD 183
Query: 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWD 1226
L +E E++ + FV+ +P + L + + V+ IT D
Sbjct: 184 IMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243
Query: 1227 DKVHG-----------YVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
+ +E +W+++ + + + + L K+ + + L F P
Sbjct: 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--T 299
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
I V D +L + L
Sbjct: 300 SGKHNLTIWCVCDSYLDADKELSFEIN 326
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 9e-39
Identities = 117/634 (18%), Positives = 217/634 (34%), Gaps = 102/634 (16%)
Query: 343 DQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG 402
D + + EE P + + ++ + + EE ++ ++ +
Sbjct: 37 DSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKK 96
Query: 403 RDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHV 462
D + + + A ++ + K + + G +
Sbjct: 97 IKSNKSKTEDKNKKVVVPVLADSFEQEASRE----VDASKGLTNSETLQVEQDGKVRLSH 152
Query: 463 PAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGA 522
L PN I+E A L+ Q + +++L+ A T A
Sbjct: 153 QVRHQVALPPNYDYTPIAEHK-RVNEARTYPFTLDPFQDTAIS-CIDRGESVLVSAHTSA 210
Query: 523 GKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVR 582
GKT VA I Q L + +++Y +P+KAL + L V
Sbjct: 211 GKTVVAEYAIAQSLKNKQ-----------RVIYTSPIKALSNQKYRELLAEFGD----VG 255
Query: 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641
++GD T+ + +V T E + + + V +I DE+H + D RG
Sbjct: 256 LMTGDITINP----DAGCLVMTTEILRSMLYRGSEVMRE--VAWVIFDEVHYMRDKERGV 309
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
V E + + +R V LSAT+PN + A ++ + ++RP PL
Sbjct: 310 VWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPL- 361
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVA------------------------------ 731
Q Y+ + E+ A
Sbjct: 362 QHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA 421
Query: 732 ------------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+ V++F S+++ + A + +D E
Sbjct: 422 KGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD------DEKEAL 475
Query: 774 REILQSHTDMVKSND--------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
+I + ++ D + LL G IHH+G+ ++++E LF +G ++VL
Sbjct: 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+T T + G+N+PA TV+ + ++ ++ W +S + +QM GRAGR D G I++
Sbjct: 536 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQMSGRAGRRGLDDRGIVIMM 593
Query: 886 TGHSELRYYLSLMN--QQLPIESQFVSKLADQLN 917
M Q ++S F LN
Sbjct: 594 IDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 627
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 2e-23
Identities = 91/451 (20%), Positives = 170/451 (37%), Gaps = 89/451 (19%)
Query: 1275 EPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEA 1334
P+ F + S + S+ + + K ++ LP P+ E
Sbjct: 113 VPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEH 172
Query: 1335 LYQGFKH-----FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389
+P Q + + ++VLV+A T +GKT+ +E+AI ++ +
Sbjct: 173 KRVNEARTYPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNK---- 227
Query: 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKW 1449
R +Y +P++AL+ ++YR+ +FG +G+ +TG D+ + ++ T E
Sbjct: 228 -QRVIYTSPIKALSNQKYRELLAEFGD-VGL----MTG----DITINPDAGCLVMTTEIL 277
Query: 1450 DALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALS 1508
++ R + +++V+ I DE+H + + G V E + + +K+R V LS
Sbjct: 278 RSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP-------DKVRYVFLS 328
Query: 1509 TSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHI---------------QGVDITNF 1552
++ NA + EWI S RP PL+ ++ NF
Sbjct: 329 ATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 388
Query: 1553 EARMQAMT-----------------------------KPTFTAIVQH--AKNEKPALVFV 1581
+ M +++ K IV+ K P +VF
Sbjct: 389 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFS 448
Query: 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE--------MLKATLR 1633
S++ A+ + D+K A + I + E + LR
Sbjct: 449 FSKRDCEELALKMSKLDFNSDDEKEAL----TKIFNNAIALLPETDRELPQIKHILPLLR 504
Query: 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664
G+G H GL +EV+ LF+ G +K+ +
Sbjct: 505 RGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-38
Identities = 107/531 (20%), Positives = 188/531 (35%), Gaps = 96/531 (18%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
+ + G + L PN I+E A L+ Q
Sbjct: 37 TNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKR-VNEARTYPFTLDPFQDTAI 95
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ +++L+ A T AGKT VA I Q L + +++Y +P+KAL
Sbjct: 96 S-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ-----------RVIYTSPIKALSN 143
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLV 624
+ L V ++GD T+ + +V T E + + + V
Sbjct: 144 QKYRELLAEFGD----VGLMTGDITINP----DAGCLVMTTEILRSMLYRGSEVMRE--V 193
Query: 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
+I DE+H + D RG V E + + +R V LSAT+PN + A ++
Sbjct: 194 AWVIFDEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKI 246
Query: 684 LEKGLFYFDNSYRPVPLSQQYI-------------------------------------- 705
+ ++RP PL
Sbjct: 247 HSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306
Query: 706 ------GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLIFVHSRKETAKTARAIRDT 756
+ K+V + K + V++F S+++ + A +
Sbjct: 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 366
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSND--------LKDLLPYGFAIHHAGMTRGD 808
+D E +I + ++ D + LL G IHH+G+
Sbjct: 367 DFNSD------DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420
Query: 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868
++++E LF +G ++VL +T T + G+N+PA TV+ + ++ ++ W +S + +QM
Sbjct: 421 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQMS 478
Query: 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMN--QQLPIESQFVSKLADQLN 917
GRAGR D G I++ M Q ++S F LN
Sbjct: 479 GRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 529
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 8e-24
Identities = 88/434 (20%), Positives = 164/434 (37%), Gaps = 89/434 (20%)
Query: 1292 GSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKH-----FNPIQ 1346
S+ + + K ++ LP P+ E +P Q
Sbjct: 32 ASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQ 91
Query: 1347 TQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406
+ + ++VLV+A T +GKT+ +E+AI ++ + R +Y +P++AL+ ++
Sbjct: 92 DTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNK-----QRVIYTSPIKALSNQK 145
Query: 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466
YR+ +FG +G+ +TG D+ + ++ T E ++ R + +++V+
Sbjct: 146 YRELLAEFGD-VGL----MTG----DITINPDAGCLVMTTEILRSMLYR--GSEVMREVA 194
Query: 1467 LFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT- 1524
I DE+H + + G V E + + +K+R V LS ++ NA + EWI
Sbjct: 195 WVIFDEVHYMRDKERGVVWEETIILLP-------DKVRYVFLSATIPNAMEFAEWICKIH 247
Query: 1525 SHGLFNFPPGVRPVPLEIHI---------------QGVDITNFEARMQAMT--------- 1560
S RP PL+ ++ NF+ M +++
Sbjct: 248 SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 307
Query: 1561 --------------------KPTFTAIVQH--AKNEKPALVFVPSRKYVRLTAVDLMTYS 1598
K IV+ K P +VF S++ A+ +
Sbjct: 308 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 367
Query: 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEE--------MLKATLRHGVGYLHEGLNKTDQEV 1650
D+K A + I + E + LR G+G H GL +EV
Sbjct: 368 FNSDDEKEAL----TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 423
Query: 1651 VSALFEAGKIKICY 1664
+ LF+ G +K+ +
Sbjct: 424 IEILFQEGFLKVLF 437
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-26
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 15/176 (8%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + A N ++CAPTG GKT V++L L K+V+ A
Sbjct: 9 QLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG------KVVFFANQ 61
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQIEETQIIVTTPEKWDIITRKSG 616
+ + S + + +SG + IE+ II+ TP+ G
Sbjct: 62 IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN-G 120
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV--RQIETTKEHIRLVGLSATL 670
+ L+I DE H + ++ I+ R + + E+ ++VGL+A++
Sbjct: 121 AIPSLSVFTLMIFDECH--NTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASV 174
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-13
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 11/165 (6%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N ++ APTG GKT S + +K + V+ A + +++ + F +
Sbjct: 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78
Query: 1417 GLGMRVVELTGETAMDLK---LLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDE 1472
LG + ++G T+ + ++E III TP+ + L+ + +L I DE
Sbjct: 79 -LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPS--LSVFTLMIFDE 135
Query: 1473 LHLIGGQGGPVLEVIVSRM--RYIASQVENKIRIVALSTSLANAK 1515
H I+ R + + ++V L+ S+
Sbjct: 136 CHNTSKN--HPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGD 178
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-25
Identities = 65/357 (18%), Positives = 123/357 (34%), Gaps = 38/357 (10%)
Query: 335 CTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKS---IREEAR 391
T LA A + + K+E+ +L ++ AT S I E
Sbjct: 84 YTGLAEAIENWDFSKLEKL-----ELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECE 138
Query: 392 RLKDESASDG----GRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPE 447
++ S + + R W QL A G + A+ D+ E
Sbjct: 139 EIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQL------ALDTTGYYRASELWDIRE 192
Query: 448 GSQRFTNKGYEEIHVPAMKHK-------PLDPNEKLIKISEMPEWAQPAFK-GMTQLNRV 499
+ + + + ++ D N S +P +
Sbjct: 193 DNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSY 252
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + + A++ N L+CAPTG+GKT V++L + K+V++A
Sbjct: 253 QIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVVFLATK 305
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDIITRKSG 616
+ + + + V+ +SG+ + IE++ IIV TP+ G
Sbjct: 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-G 364
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
T + L+I DE H N P + ++ + + +++GL+A++
Sbjct: 365 TLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 3e-11
Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 10/213 (4%)
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
E+ P L + + P K Q ++ N N L+ APT
Sbjct: 217 SEEAEPDDNLSENLGSAAEGIGKPP---PVYETKKARSYQIELAQPAIN-GKNALICAPT 272
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKT S + Q + V++A + +++ ++ F + G V ++
Sbjct: 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSVQGIS 331
Query: 1427 GETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
GE ++ ++E II+ TP+ + +L I DE H G P
Sbjct: 332 GENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDECHNTTG-NHPY 389
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
++ + + +I+ L+ S+
Sbjct: 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-25
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 480 SEMPEWAQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
S+ A A QL Q V + AL NI++C PTG+GKT VAV L
Sbjct: 17 SDEENVAARASPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDK 75
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQI 595
+ K++ + LV ++ +V LSGD + + +
Sbjct: 76 KKKASEPG-----KVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV 130
Query: 596 EETQIIVTTPEKW--DIITRKSGDRTYTQL--VKLLIIDEIHLLHDNRGPVLESIV---- 647
+ II++T + ++ ++G+ QL L+IIDE H H N+ V +I+
Sbjct: 131 KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH--HTNKEAVYNNIMRHYL 188
Query: 648 ------ARTVRQIETTKEHIRLVGLSAT 669
R ++ + +++GL+A+
Sbjct: 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 25/171 (14%)
Query: 1358 DNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
N+++ PTGSGKT + + L +KASE G + + + L ++ +R F
Sbjct: 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG--KVIVLVNKVLLVEQLFRKEFQPF 106
Query: 1415 GQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKW--DALSRRWKQRKYVQ--QVSL 1467
+ RV+ L+G+T + + +++ IIIST + L+ + VQ SL
Sbjct: 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 165
Query: 1468 FIIDELHLIGGQGGPVLEVIVSRM----------RYIASQVENKIRIVALS 1508
IIDE H V I+ + V +I+ L+
Sbjct: 166 IIIDECHHT--NKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLT 214
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
+ Q + + A++ N L+CAPTG+GKT V++L + K+V
Sbjct: 7 KARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVV 59
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDII 611
++A + + + + V+ +SG+ + IE++ IIV TP+
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ-IETTKEHIRLVGLSATL 670
G T + L+I DE H + ++ R + Q + + +++GL+A++
Sbjct: 120 FED-GTLTSLSIFTLMIFDECH--NTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV 176
Query: 671 PN 672
Sbjct: 177 GV 178
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 2e-12
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N L+ APTGSGKT S + Q + V++A + +++ ++ F +
Sbjct: 22 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81
Query: 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473
G V ++GE ++ K++E II+ TP+ + +L I DE
Sbjct: 82 -QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDEC 139
Query: 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL--ANAKDLGEWI 1521
H G P ++ + + +I+ L+ S+ NAK++ E I
Sbjct: 140 HNTTG-NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 188
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 105 bits (261), Expect = 8e-23
Identities = 62/356 (17%), Positives = 124/356 (34%), Gaps = 38/356 (10%)
Query: 335 CTRLARAQDQEERKKIEEE------MMGLGPDLAAILDQLHATRATAKERQKNLEKSIRE 388
T LA A + + K+E+ + + + + + + E+ +
Sbjct: 84 YTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQI 143
Query: 389 EARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEG 448
R S + G + R W QL A G + A+ D+ E
Sbjct: 144 SENR----SKAAGITKLIECLCRSDKEHWPKSLQL------ALDTTGYYRASELWDIRED 193
Query: 449 SQRFTNKGYEEIHVPAMKHK-------PLDPNEKLIKISEMPEWAQPAFK-GMTQLNRVQ 500
+ + + + ++ D N S +P + Q
Sbjct: 194 NAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQ 253
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
+ + A++ N L+CAPTG+GKT V++L + K+V++A
Sbjct: 254 IELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVVFLATKV 306
Query: 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDIITRKSGD 617
+ + + + V+ +SG+ + IE++ IIV TP+ G
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GT 365
Query: 618 RTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ-IETTKEHIRLVGLSATLPN 672
T + L+I DE H + ++ R + Q + + +++GL+A++
Sbjct: 366 LTSLSIFTLMIFDECH--NTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV 419
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 1e-10
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 12/224 (5%)
Query: 1303 HLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLV 1362
+ E+ P L + + P K Q ++ N N L+
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPP---PVYETKKARSYQIELAQPAIN-GKNALI 268
Query: 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422
APTGSGKT S + Q + V++A + +++ ++ F + G V
Sbjct: 269 CAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSV 327
Query: 1423 VELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
++GE ++ ++E II+ TP+ + +L I DE H G
Sbjct: 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDECHNTTG- 385
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSL--ANAKDLGEWI 1521
P ++ + + +I+ L+ S+ NAK++ E I
Sbjct: 386 NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 429
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 6e-21
Identities = 60/295 (20%), Positives = 106/295 (35%), Gaps = 14/295 (4%)
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
+ E+ + + LE+ + + N
Sbjct: 222 IWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTR 281
Query: 686 KGLFYFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLI 738
G NS R K+ + + ++V K + +++
Sbjct: 282 DGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQSHTDMVKSNDLKDLLPYG 796
FV S+K + A + N+ + + + + D+ + + LL G
Sbjct: 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401
Query: 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856
A+HH G+ ++L+E LF G ++VL +T T A G+NLP TVI + ++
Sbjct: 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRE 461
Query: 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIIT---GHSELRYYLSLMNQQLPIESQF 908
L+P + QM GRAGR DS G I++ S + M ++SQF
Sbjct: 462 --LTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQF 514
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 2e-14
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 24/203 (11%)
Query: 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403
Q + L D+V VAA T +GKT+ +E+AI H+ + + +Y +P++AL+
Sbjct: 42 TFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALS 95
Query: 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1463
+++RD++ F + +TG D+++ +I T E S ++ ++
Sbjct: 96 NQKFRDFKETFDDV---NIGLITG----DVQINPDANCLIMTTEIL--RSMLYRGADLIR 146
Query: 1464 QVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
V I DE+H + G V E ++ + ++ + LS ++ N + WIG
Sbjct: 147 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLP-------QHVKFILLSATVPNTYEFANWIG 199
Query: 1523 ATSHGLFN-FPPGVRPVPLEIHI 1544
T RPVPLEI+I
Sbjct: 200 RTKQKNIYVISTPKRPVPLEINI 222
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-12
Identities = 59/323 (18%), Positives = 114/323 (35%), Gaps = 35/323 (10%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L D++ + A T AGKT VA I K +Y +P+KAL +
Sbjct: 50 HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT-----------KTIYTSPIKALSNQK 98
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL--V 624
+ ++ + ++GD + + ++ T E I R R + V
Sbjct: 99 FRDFKETFDDVNIGL--ITGDVQINP----DANCLIMTTE----ILRSMLYRGADLIRDV 148
Query: 625 KLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
+ +I DE+H ++D RG V E + I +H++ + LSAT+PN + A ++
Sbjct: 149 EFVIFDEVHYVNDQDRGVVWEEV-------IIMLPQHVKFILLSATVPNTYEFANWIGRT 201
Query: 684 LEKGLFYFDNSYRPVPLSQ-QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
+K ++ RPVPL + ++ + + + + K +
Sbjct: 202 KQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
+ A N GR + +S ++ + F
Sbjct: 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRG---GANRGGSRGAGAIGSNKRKFFTQDG 318
Query: 803 GMTRGDRQLVEDLFGDGHVQVLV 825
+ ++V L + ++V
Sbjct: 319 PSKKTWPEIVNYLRKRELLPMVV 341
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-04
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 1555 RMQAMTKPTFTAIVQH--AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
+K T+ IV + + P +VFV S+K A L + + +KS
Sbjct: 315 TQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI---- 370
Query: 1613 AEEVEPFIDNIQEE--------MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICY 1664
+E I +++E ++ L G+ H GL +E++ LF G IK+ +
Sbjct: 371 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF 430
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 94.3 bits (233), Expect = 2e-19
Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 21/190 (11%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + A+ N ++CAPTG GKT V++L L K+V+ A
Sbjct: 18 QLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQ 70
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQIEETQIIVTTPEKWDIITRKSG 616
+ + S + + +V +SG Q +E II+ TP+ +K G
Sbjct: 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-G 129
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
+ L+I DE H I +L G S LP +
Sbjct: 130 TIPSLSIFTLMIFDECHNTSKQ----------HPYNMIMFNYLDQKLGGSSGPLPQVIGL 179
Query: 677 ALFLRVNLEK 686
+ V K
Sbjct: 180 TASVGVGDAK 189
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 69.6 bits (169), Expect = 6e-12
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N ++ APTG GKT S + +K + + V+ A + ++ K+ +
Sbjct: 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKS-VFSKYFE 86
Query: 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473
G RV ++G TA ++ +++E III TP+ ++ + +L I DE
Sbjct: 87 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDEC 145
Query: 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
H Q + + + + +++ L+ S+
Sbjct: 146 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 5e-16
Identities = 98/593 (16%), Positives = 205/593 (34%), Gaps = 130/593 (21%)
Query: 418 LGQRQLLDLDTLA-FQQGGLFMANRKC-DLPEGSQR-FTNKGYEEI-HVP---------- 463
G+ Q D L+ F+ F+ N C D+ + + + + + I
Sbjct: 11 TGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 464 -AMKHKP-----------LDPNEKLIKISEMPEWAQPAFKG---MTQLNRVQS--RVY-- 504
+ K L N K + E QP+ + Q +R+ + +V+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 505 ------------KSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG----S 545
+ AL A N+L+ G+GKT VA+ L + D +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 546 FNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYDVKVRELSGDQTLTR----QQIEETQI 600
+ N + ++ L+ ++ N ++R ++K+R S L R + E +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 601 I---VTTPEKWD---------IITRKSGDRTYTQLVKLLIIDEIHLLHDNRG---PVLES 645
+ V + W+ + TR + T + I L H + ++S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 646 IVARTVRQI------ETTKEHIRLVGL-SATLPNYEDVA-LFLRVNLEKGLFYFDNSYR- 696
++ + + E + R + + + ++ + + VN +K ++S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 697 --PVPLSQQY--IGI---QVKKPLQRFQLM-NDLCYEKVVAVAGK-HQVLIFVHSRKETA 747
P + + + + P L+ D+ V+ V K H+ + KE+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 748 KTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP-------YGFAIH 800
+ I L + + E ++ R I+ + ++ K+ D DL+P Y H
Sbjct: 426 IS---IPSIYL--ELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 801 H-AGMTRGDR-QLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H + +R L +F D ++ + + AW + + + + Y K
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFY---KPYIC 535
Query: 858 ELSPL------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904
+ P I+ L + E +I + +++L ++LM + I
Sbjct: 536 DNDPKYERLVNAILDFLPK--------IEENLICSKYTDL-LRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 1e-12
Identities = 69/481 (14%), Positives = 137/481 (28%), Gaps = 128/481 (26%)
Query: 1222 DFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQY 1281
+ + D + + + F V++ D + + +L K+ E DH I
Sbjct: 15 QYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKE--EIDH-------IIMSKDAVS 62
Query: 1282 FIRVVSDKWLGSQTVLPVSFRHLILPEKYP---PPTELLDLQPLPVTAL----RNPLYEA 1334
+ L Q + F +L Y P + QP +T + R+ LY
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 1335 LYQGFKHFN-----PIQTQVFTVLYNTDD--NVLVAAPTGSGKTI-----CSEFAILRNH 1382
Q F +N P ++ L NVL+ GSGKT C + +
Sbjct: 123 N-QVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 1383 QKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ-----GLGMRVVELTGETAMDLKLLE 1437
++ W + + + +L +D
Sbjct: 181 D--------FKIF--------------W-LNLKNCNSPETVLEMLQKLL--YQIDPNWTS 215
Query: 1438 KGQIIISTP----EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE-------- 1485
+ + L R K + Y L ++ + Q
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNV-----QNAKAWNAFNLSCKI 268
Query: 1486 VIVSRMRYIASQVEN----KIRIVALSTSL--ANAKDL-GEWIGATSHGLFNFPPGVRPV 1538
++ +R + + + I + S +L K L +++ L P V
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTT 325
Query: 1539 -PLEIHIQGVDITNFEARMQ---AMTKPTFTAIVQHA-KNEKPAL---------VFVPSR 1584
P + I I + A + T I++ + +PA VF
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P 382
Query: 1585 KYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL--RHGVG---YL 1639
+ + L L+W + ++ + + ++ K +L + +
Sbjct: 383 PSAHIPTILLS-------------LIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 1640 H 1640
Sbjct: 429 P 429
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 83/684 (12%), Positives = 183/684 (26%), Gaps = 224/684 (32%)
Query: 542 DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQII 601
+ G + I+ V + +D K + L++++I+ I
Sbjct: 10 ETGEHQYQYKDILSV------------FEDAFVDNFDCKDVQDMPKSILSKEEIDH---I 54
Query: 602 VTTPEK--------WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
+ + + W + + V+ +L N ++ I +
Sbjct: 55 IMSKDAVSGTLRLFW--TLLSKQEEMVQKFVE-------EVLRINYKFLMSPIKTEQRQP 105
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
T+ +I Y D +F + N+ R P +++++ L
Sbjct: 106 SMMTRMYI-----EQRDRLYNDNQVFAKYNV----------SRLQPY------LKLRQAL 144
Query: 714 QRFQLMNDLCYEKVVAV-----AGKHQVLIFVHSRKETAKTARAIRDTALEND------- 761
+ K V + +GK + ++
Sbjct: 145 LELR------PAKNVLIDGVLGSGK-TWV-----------ALDVCLSYKVQCKMDFKIFW 186
Query: 762 -TLGRFLKEDSVSREILQ----------------SHTDMVKSNDLKDLLPYGFAIHHAGM 804
L ++V E+LQ S ++ + ++ L
Sbjct: 187 LNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241
Query: 805 TRGDRQL-----VEDL-----FGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYN 850
+ L V++ F + ++L++T T H +
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDH------ 293
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVS 910
L+P ++ +L + YL Q LP E +
Sbjct: 294 HSMT----LTPDEVKSLLLK-----------------------YLDCRPQDLPREVLTTN 326
Query: 911 KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN---PALYGLAPEVLKE------- 960
+ AE + W + ++ L +L L P ++
Sbjct: 327 PRRLSIIAESI------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 961 -----DITL-------GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDL-----GRIA 1003
I + V L + +LV+ K + + ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 1004 SYYYISHGT-ISTYNEHLKPTMGDIELCRLFSLSEEFKYV---------TVRQDEKMEL- 1052
+ Y + H + + YN D +Y + E+M L
Sbjct: 441 NEYAL-HRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 1053 -AKLLD------RVPIPVKESLEEPSAKINVLLQ-----AYISQLKLEGLSLTSDMV-FI 1099
LD ++ + + +N L Q YI + L + ++ F+
Sbjct: 494 RMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 1100 TQSAGRLLRALFEIVLKRGWAQLA 1123
+ L+ + + +L ++A
Sbjct: 553 PKIEENLICSKYTDLL-----RIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 1e-09
Identities = 102/736 (13%), Positives = 198/736 (26%), Gaps = 261/736 (35%)
Query: 194 LDDDMGVAVEFEEND---DDEEE--SDLDMVQEED--------EEEEEDVAEPNA-SGAM 239
+D + G +++ D E+ + D +D EE + + +A SG +
Sbjct: 7 MDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 240 QMGGGIDDDDESGDANEGMSLNVQDIDA--Y-WLQRKISQAFDQQIDPQQCQKLAEEVLK 296
++ + E E + V+++ Y +L I +Q P ++ E
Sbjct: 66 RLFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRD 117
Query: 297 ILAEGDDR---------EVENKL---LYHLQ------------FDKFSLI-------KFL 325
L + + KL L L+ K + K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 326 LRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKS 385
+ K+ W L E ++ + L +D +R+ K S
Sbjct: 178 CKMDFKIFWLN-LKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 386 IREEARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTL-------AFQQGGLFM 438
I+ E RRL L + + LL L + AF
Sbjct: 230 IQAELRRL--------------LKSKP------YENCLLVLLNVQNAKAWNAF------- 262
Query: 439 ANRKCDLPEGSQ-----RFTN-----KGYEEIHVPAMKH-KPLDPNEKL--------IKI 479
N C + RF H+ H L P+E +
Sbjct: 263 -NLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 480 SEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
++P L++ N + + L
Sbjct: 316 QDLPR---------------------EVLTT--NPRRLSIIAE----------SIRDGLA 342
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL--QMY--------DVKVRELSGDQT 589
D N+K V + ++ + L +M+ +
Sbjct: 343 TWD-------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT----IL 391
Query: 590 LTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
L+ + ++V K+ ++ ++ + T + I ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----------IPSIYL-------- 433
Query: 646 IVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-- 702
++E H +V N+ K + + P L Q
Sbjct: 434 ---ELKVKLENEYALHRSIVD---------------HYNIPKT--FDSDDLIPPYLDQYF 473
Query: 703 -QYIG--IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759
+IG ++ + +R L + + F+ + TA + L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLD-----------FRFLEQKIRHDSTAWNASGSIL- 521
Query: 760 NDTLGRFLKEDSVSREILQSHTD---MVKSNDLKDLLP-YGFAIHHAGMTRGDRQLV--- 812
+TL + I + +V N + D LP + + T L+
Sbjct: 522 -NTLQQLKF---YKPYICDNDPKYERLV--NAILDFLPKIEENLICSKYTD----LLRIA 571
Query: 813 -----EDLFGDGHVQV 823
E +F + H QV
Sbjct: 572 LMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 6e-07
Identities = 73/473 (15%), Positives = 132/473 (27%), Gaps = 154/473 (32%)
Query: 1074 INVLLQAYISQLKLEGLS------LTS---DMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124
++V A++ + + L+ D + +++ A LF +L + ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQ 80
Query: 1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPK 1184
K V+ LR N F Q + +
Sbjct: 81 KF-------------VEEVLR-----IN--------YKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 1185 MGRTLHKFVHQFPKLILAAHV---QPIT--RTVLKVELTITPDFLWDDKVHG-------- 1231
L+ F K +V QP R L EL + L + G
Sbjct: 115 QRDRLYNDNQVFAKY----NVSRLQPYLKLRQALL-ELRPAKNVL----IDGVLGSGKTW 165
Query: 1232 ---------YVEP------FWVIV-EDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
V+ FW+ + N E +L ML+K + D N+T
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDP--NWTSRSDH 219
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEAL 1335
+ I + + R L+ + Y LL L ++N
Sbjct: 220 SSNIKLRIHSIQAE-----------LRRLLKSKPY--ENCLLVLL-----NVQNA----- 256
Query: 1336 YQGFKHFNPIQTQVFTVLYNTDD----NVLVAAPTGS--------------GKTICSEFA 1377
+ + FN + + +L T + L AA T K++ ++
Sbjct: 257 -KAWNAFN-LSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 1378 ILRNHQKASETGVMRAVYIAPLE-ALAKERYRD----WE-------IKFGQGLGMRVVEL 1425
R E + P ++ E RD W+ K + + L
Sbjct: 312 DCRPQDLPRE-----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 1426 TGETA----MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
L + I P LS W + ++++LH
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI---PTI--LLSLIWFDVIK--SDVMVVVNKLH 412
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 6e-14
Identities = 78/497 (15%), Positives = 152/497 (30%), Gaps = 120/497 (24%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q +Y + N L+ PTG GKT +A++ +L K++ +AP
Sbjct: 14 QEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRL----------TKYGGKVLMLAPT 61
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLT--RQQIEETQIIVTTP------------ 605
K LV + + + K+ L+G+++ + ++IV TP
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 606 --EKWDIIT-----RKSGDRTYTQLVKLLIIDEIHLL--------HDNRGPVLESIVART 650
E +I R G+ Y + + + L ++E I
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181
Query: 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQ 708
+ IE E+ V +E V + L ++ R PL++ +
Sbjct: 182 IEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241
Query: 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR----------DTAL 758
+ + +++ G H + + K AI +
Sbjct: 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301
Query: 759 END----------------TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH-- 800
+ + R K S+ + + D K + LK+++
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQN 361
Query: 801 --------------------------------------HAGMTRGDRQLVEDLFGDGHVQ 822
G+++ +++L+ D F G
Sbjct: 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
VLV+T+ G+++P +++ Y P S + +Q GR GR
Sbjct: 422 VLVATSVGEEGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGR-HMPGRVII 470
Query: 883 IIITGHSELRYYLSLMN 899
++ G + YY S
Sbjct: 471 LMAKGTRDEAYYWSSRQ 487
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-07
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N L+ PTG GKT+ A++ + ++ G + + +AP + L + + F
Sbjct: 25 NCLIVLPTGLGKTL---IAMMIAEYRLTKYGG-KVLMLAPTKPLVLQHAESFRRLFNLPP 80
Query: 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELH 1474
++V LTGE + + K + ++I++TP+ + + VSL + DE H
Sbjct: 81 E-KIVALTGEKSPEERSKAWARAKVIVATPQTI----ENDLLAGRISLEDVSLIVFDEAH 135
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
G V R Q +N ++ L+ S + +
Sbjct: 136 RAVGNY-----AYVFIAREYKRQAKNP-LVIGLTASPGSTPE 171
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 69/379 (18%), Positives = 123/379 (32%), Gaps = 71/379 (18%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+ PTG+GKT+VA + + +L + + V P AL
Sbjct: 112 CIVLPTGSGKTHVA-MAAINEL-------------STPTLIVVPTLALAE---------- 147
Query: 575 QMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q + ++ + + + E + V+T +D LLI DE+
Sbjct: 148 QWKE-RLGIFGEEYVGEFSGRIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEV 201
Query: 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF--Y 690
H L A + QI +GL+AT + L+ + +F +
Sbjct: 202 HHL-----------PAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELF 250
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750
D+ I V + + L + +
Sbjct: 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310
Query: 751 RAIR--DTALENDTLGRFLKEDS-----VSREILQSHTDM-----VKSNDLKDLLPYGFA 798
AL R + +S REIL+ H + N+L + F
Sbjct: 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL 370
Query: 799 IH--HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPEKGA 855
I +R +R+ + + F G + +VS+ L G+++P A+ +I +
Sbjct: 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----------MS 420
Query: 856 WTELSPLDIMQMLGRAGRP 874
+ S + +Q LGR RP
Sbjct: 421 GSG-SAREYIQRLGRILRP 438
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420
+ PTGSGKT + AI + + P ALA++ W+ + G
Sbjct: 112 CIVLPTGSGKTHVAMAAI-NELST-------PTLIVVPTLALAEQ----WKERLGIFGEE 159
Query: 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480
V E +G ++ E + +ST +D+ K + L I DE+H + +
Sbjct: 160 YVGEFSG------RIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEVHHLPAES 208
Query: 1481 -GPVLEVIVSRMRY 1493
+ ++ ++ R
Sbjct: 209 YVQIAQMSIAPFRL 222
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 1311 PPP----TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
P P +L + L+N + + GF+ PIQ Q V+ + + +L +APT
Sbjct: 21 PDPIATFQQLDQEYKINSRLLQN-ILD---AGFQMPTPIQMQAIPVMLHGRE-LLASAPT 75
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKT+ IL ++ + G RA+ I+P LA + +R+ K +G G R+ +
Sbjct: 76 GSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELI-KISEGTGFRIHMIH 133
Query: 1427 GETAMDLKL---LEKG-QIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDE 1472
K K I+++TP + L + + V ++DE
Sbjct: 134 KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD-PPGIDLASVEWLVVDE 183
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 7e-08
Identities = 56/375 (14%), Positives = 98/375 (26%), Gaps = 102/375 (27%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L +L GAGKT + IL + + + +AP + +++E+
Sbjct: 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAE----------CARRRLRTLVLAPTRVVLSEM 53
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
+ + G I +T + + T ++
Sbjct: 54 KEAFHGLDVKFHTQAFSAHGSGR--------EVIDAMCHA---TLTYRMLEPTRVVNWEV 102
Query: 627 LIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+I+DE H L SI AR + ++AT P
Sbjct: 103 IIMDEAHFLD------PASIAARGWAAHRARANESATILMTATPPGTS------------ 144
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
F +S + Q I P + + +D K F+ S +
Sbjct: 145 --DEFPHSNGEIEDVQTDI------PSEPWNTGHDWILAD------KRPTAWFLPSIRAA 190
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A ++R ++R+ + +K
Sbjct: 191 NVMAASLRK---------AGKSVVVLNRKTFEREYPTIKQKKPD---------------- 225
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT---QIYNPEKGAWTELSPLD 863
+++T G NL V+ T + E PL
Sbjct: 226 ----------------FILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLR 269
Query: 864 I-----MQMLGRAGR 873
I Q GR GR
Sbjct: 270 ISASSAAQRRGRIGR 284
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 50/341 (14%), Positives = 96/341 (28%), Gaps = 96/341 (28%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
+ + APTG GKT ++T L K V P LV + + L
Sbjct: 38 SFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTLVKQTLERLQ- 85
Query: 573 RLQMYDVKVRELSG-------DQTLTRQQIEETQIIVTTP----EKWDIITRKSGDRTYT 621
+L VK+ ++ + ++ I+V + + + +++K
Sbjct: 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKR------ 139
Query: 622 QLVKLLIIDEIHLLHDNRGPVLES--IVARTVRQIETTKEHIRLVGLSATLPN--YEDVA 677
+ +D++ D VL++ + + + +E IR S YE
Sbjct: 140 --FDFVFVDDV----DA---VLKASRNIDTLLMMVGIPEEIIRKA-FSTIKQGKIYERPK 189
Query: 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------QRFQLMNDLCYEKVVAV 730
L L + + V + + EK+V +
Sbjct: 190 NLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRS--KEKLVEL 247
Query: 731 AGKH--QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788
+LIF +E L +LK
Sbjct: 248 LEIFRDGILIFA-QTEEEG-------------KELYEYLKRF------------------ 275
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
F + G T + + + F G + +L+
Sbjct: 276 -------KF---NVGETWSEFEKNFEDFKVGKINILIGVQA 306
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 3e-06
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
A+ + + G + F D + ++LV+T + G+NL +I +
Sbjct: 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSIN 404
Query: 853 KGAWTELSPLD---IMQMLGRAGRPQYDSYGEGIIITGHSE-LRYYLSLMNQQL-PIESQ 907
+ EL P+ +Q+ GRAGR + EG + T + E L ++ + + PI +
Sbjct: 405 EKGERELEPITTSQALQIAGRAGRFSSR-FKEGEVTTMNHEDLSLLKEILKRPVDPIRAA 463
Query: 908 FVSKLADQLNA 918
+ A+Q+
Sbjct: 464 GLHPTAEQIEM 474
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 45/159 (28%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+ PTG+GKT+VA + L+ VV L+
Sbjct: 112 CIVLPTGSGKTHVA----------------------MAAINELSTPTLI--VVPTLALAE 147
Query: 575 QMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q + ++ + + + E + V+T +D LLI DE+
Sbjct: 148 QWKE-RLGIFGEEYVGEFSGRIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEV 201
Query: 633 HLLHDNRGPVLESIVARTVRQI-ETTKEHIRLVGLSATL 670
H L P A + QI + + RL GL+AT
Sbjct: 202 HHL-----P------AESYVQIAQMSIAPFRL-GLTATF 228
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 7e-06
Identities = 40/264 (15%), Positives = 70/264 (26%), Gaps = 55/264 (20%)
Query: 503 VYKSALSSADNILLCAPTGAGKTNVAVLT-ILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
V + ++ GAGKT IL + + + +AP +
Sbjct: 11 VDEDIFRKKRLTIMDLHPGAGKT-----KRILPSIVREALLRR------LRTLILAPTRV 59
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYT 621
+ AE+ L Y + + + T + T
Sbjct: 60 VAAEMEEALRGLPIRYQT--------PAVKSDHTGREIVDLMCHA---TFTTRLLSSTRV 108
Query: 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681
L+++DE H S+ AR + ++AT P
Sbjct: 109 PNYNLIVMDEAHFTD------PCSVAARGYISTRVEMGEAAAIFMTATPPGST------- 155
Query: 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741
F S P+ ++ I + F + D + + FV
Sbjct: 156 -------DPFPQSNSPIEDIEREIPERSWN--TGFDWITDYQ----------GKTVWFVP 196
Query: 742 SRKETAKTARAIRDTALENDTLGR 765
S K A +R + L R
Sbjct: 197 SIKAGNDIANCLRKSGKRVIQLSR 220
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 87/331 (26%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNLSNRL 574
+ +G GKT VL +L Q+ + + ++P L +V+ +
Sbjct: 71 SQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVIEQMGKF- 121
Query: 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK-WDIITRKSGDRTY-TQLVKLLIIDEI 632
++K+ L R Q QI++ TP D ++ + + +K+ ++DE
Sbjct: 122 -YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL---KFIDPKKIKVFVLDEA 177
Query: 633 HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF--------LRV 682
++ +G I + +++ SAT + V F +
Sbjct: 178 DVMIATQGHQDQSIRI-------QRMLPRNCQMLLFSATFE--DSVWKFAQKVVPDPNVI 228
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
L++ D + Q Y + ++FQ + +L Y + +A Q +IF H+
Sbjct: 229 KLKREEETLDT------IKQYY--VLCSSRDEKFQALCNL-YG-AITIA---QAMIFCHT 275
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
RK L L ++ +L
Sbjct: 276 RKTA--------------SWLAAELSKEGHQVALL-----------------------SG 298
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
M R V + F +G +VLV+T A G
Sbjct: 299 EMMVEQRAAVIERFREGKEKVLVTTNVCARG 329
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 84/483 (17%), Positives = 166/483 (34%), Gaps = 94/483 (19%)
Query: 473 NEKLIK-ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVL 530
++++ K I+ M F G+T VQ + K LSS D+ ++ A TG GKT ++
Sbjct: 80 DKEIHKAITRM------EFPGLTP---VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLI 130
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNL-SNRLQMYDVKVRELSG 586
I Q L + D + K V VAP + L + V + + L G
Sbjct: 131 PIFQHLINTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 186
Query: 587 DQTLTRQQI----EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEI-HLLHDNRG 640
I++ TP + D++ + S + + V ++DE LL
Sbjct: 187 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK--FFRFVDYKVLDEADRLLEIGFR 244
Query: 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFD----NS 694
LE+I + + ++I+ + SATL + + +A + +K + D N
Sbjct: 245 DDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN---KKECLFLDTVDKNE 301
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
Q + + +K + +++ ++ +IF + K T+
Sbjct: 302 PEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI-- 358
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLV 812
LK+ I H +T+ R +
Sbjct: 359 ----------------------------------LKNEFKKDLPILEFHGKITQNKRTSL 384
Query: 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ---MLG 869
F +LV T A G++ P +++ P ++ +G
Sbjct: 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV---------PSELANYIHRIG 431
Query: 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIESQFVSKLADQLNAEIVLGTVQNA 928
R R G ++ EL + L + + I Q + ++++ +E++ +
Sbjct: 432 RTAR--SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEP 489
Query: 929 KEA 931
++
Sbjct: 490 EDI 492
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 87/331 (26%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNLSNRL 574
+ +G GKT VL +L Q+ + + ++P L +V+ +
Sbjct: 138 SQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVIEQMGKF- 188
Query: 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK-WDIITRKSGDRTY-TQLVKLLIIDEI 632
++K+ L R Q QI++ TP D ++ + + +K+ ++DE
Sbjct: 189 -YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL---KFIDPKKIKVFVLDEA 244
Query: 633 HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF--------LRV 682
++ +G I + +++ SAT + V F +
Sbjct: 245 DVMIATQGHQDQSIRI-------QRMLPRNCQMLLFSATFE--DSVWKFAQKVVPDPNVI 295
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
L++ D + Q Y + ++FQ + +L Y + +A Q +IF H+
Sbjct: 296 KLKREEETLDT------IKQYY--VLCSSRDEKFQALCNL-YG-AITIA---QAMIFCHT 342
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
RK L L ++ +L
Sbjct: 343 RKTA--------------SWLAAELSKEGHQVALL-----------------------SG 365
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
M R V + F +G +VLV+T A G
Sbjct: 366 EMMVEQRAAVIERFREGKEKVLVTTNVCARG 396
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 42/250 (16%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLT-ILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565
L +L G+GKT IL Q+ D + +AP + + AE
Sbjct: 17 MLRKRQMTVLDLHPGSGKT-----RKILPQII----KDAIQQR--LRTAVLAPTRVVAAE 65
Query: 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625
+ L Y R+ + V +T +
Sbjct: 66 MAEALRGLPVRYQTSAV--------QREHQGNEIVDVMCH---ATLTHRLMSPNRVPNYN 114
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
L ++DE H SI AR + + ++AT P
Sbjct: 115 LFVMDEAHFTD------PASIAARGYIATKVELGEAAAIFMTATPPGTT----------- 157
Query: 686 KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE 745
F +S P+ Q I P + + + E + + FV S K
Sbjct: 158 ---DPFPDSNAPIHDLQDEI------PDRAWSSGYEWITE------YAGKTVWFVASVKM 202
Query: 746 TAKTARAIRD 755
+ A ++
Sbjct: 203 GNEIAMCLQR 212
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L ++ GF+ + IQ + + D VL A +G+GKT F+I +
Sbjct: 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKT--GTFSIAALQRID 77
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIII 1443
+ +A+ +AP LA + + + ++V G T+ D + L QI++
Sbjct: 78 TSVKAPQALMLAPTRELALQIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVV 136
Query: 1444 STPEK-WDALSRRWKQRKYVQQVSLFIIDE 1472
TP + +D + RR + ++ +FI+DE
Sbjct: 137 GTPGRVFDNIQRRRFR---TDKIKMFILDE 163
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 74/363 (20%), Positives = 126/363 (34%), Gaps = 96/363 (26%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q A++ D IL A G GKT V+ L+++ N + + + P
Sbjct: 47 IQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKLNK--------IQALIMVP 97
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDII 611
+ L ++VV L + +G L + E I+V TP + D+
Sbjct: 98 TRELALQTSQVVRTLGKHC---GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA 154
Query: 612 TRKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSA 668
+RK D L I+DE +L +R ++E I + + + SA
Sbjct: 155 SRKVAD---LSDCSLFIMDEADKML--SRDFKTIIEQI-------LSFLPPTHQSLLFSA 202
Query: 669 TLPNYEDVALF--------LRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720
T P V F +NL + L + QY V++ Q+ +N
Sbjct: 203 TFP--LTVKEFMVKHLHKPYEINLMEEL--------TLKGITQYY-AFVEER-QKLHCLN 250
Query: 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
L + K+ +Q +IF +S + L + + + S
Sbjct: 251 TL-FSKLQI----NQAIIFCNSTNRV--------------ELLAKKITDLGYSCYYS--- 288
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
HA M + +R V F G V+ LV + L G+++ A
Sbjct: 289 --------------------HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328
Query: 841 VII 843
V+I
Sbjct: 329 VVI 331
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 84/482 (17%), Positives = 166/482 (34%), Gaps = 92/482 (19%)
Query: 473 NEKLIK-ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVL 530
++++ K I+ M F G+T VQ + K LSS D+ ++ A TG GKT ++
Sbjct: 29 DKEIHKAITRM------EFPGLTP---VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLI 79
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNL-SNRLQMYDVKVRELSG 586
I Q L + D K V VAP + L + V + + L G
Sbjct: 80 PIFQHLINTKFDS----QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 587 DQTLTRQQIEE-----TQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEI-HLLHDNR 639
R + + I++ TP + D++ + S + + V ++DE LL
Sbjct: 136 GTDF-RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK--FFRFVDYKVLDEADRLLEIGF 192
Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFDNSYRP 697
LE+I + + ++I+ + SATL + + +A + L D +
Sbjct: 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252
Query: 698 VP--LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
+ Q + +K + +++ ++ +IF + K T+
Sbjct: 253 AHERIDQSVV--ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI--- 307
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVE 813
LK+ I H +T+ R +
Sbjct: 308 ---------------------------------LKNEFKKDLPILEFHGKITQNKRTSLV 334
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ---MLGR 870
F +LV T A G++ P +++ P ++ +GR
Sbjct: 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV---------PSELANYIHRIGR 381
Query: 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIESQFVSKLADQLNAEIVLGTVQNAK 929
R G ++ EL + L + + I Q + ++++ +E++ + +
Sbjct: 382 TAR--SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPE 439
Query: 930 EA 931
+
Sbjct: 440 DI 441
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFA--ILRNHQ 1383
L + + A+ GF+ IQ +V + N + N++ A TGSGKT + FA ++ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKT--ASFAIPLI---E 67
Query: 1384 KASETGVMRAVYIAPLEALA---KERYRDWEI-KFGQGLGMRVVELTGETAMD--LKLLE 1437
+E + A+ + P LA + EI +++ ++ G A+ +K L+
Sbjct: 68 LVNENNGIEAIILTPTRELAIQVAD-----EIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 1438 KGQIIISTP 1446
I++ TP
Sbjct: 123 NANIVVGTP 131
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI-----LR 1380
L + L + ++ IQ Q + D VL AA TGSGKT+ F + L
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD-VLGAAKTGSGKTLA--FLVPVLEALY 88
Query: 1381 NHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK 1438
Q S G+ + I+P LA + + K G+ + G + + +
Sbjct: 89 RLQWTSTDGL-GVLIISPTRELAYQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINN 146
Query: 1439 GQIIISTP 1446
I++ TP
Sbjct: 147 INILVCTP 154
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-04
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 89/360 (24%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q R + D +L A +G GKT + LQ++ + + + +AP
Sbjct: 47 IQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTSVK--------APQALMLAP 97
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK-WDIIT 612
+ L + +VV L+ + D+KV G + + + QI+V TP + +D I
Sbjct: 98 TRELALQIQKVVMALAFHM---DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQ 154
Query: 613 RKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSAT 669
R+ T +K+ I+DE +L + G + I ++V LSAT
Sbjct: 155 RRRFR---TDKIKMFILDEADEML--SSGFKEQIYQI-------FTLLPPTTQVVLLSAT 202
Query: 670 LPNY-EDVA-LFLR----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723
+PN +V F+R + ++K + + Q Y + V++ +++ + DL
Sbjct: 203 MPNDVLEVTTKFMRNPVRILVKKDELTLEG------IKQFY--VNVEEEEYKYECLTDL- 253
Query: 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
Y+ + Q +IF ++R++ + L L+ D + +
Sbjct: 254 YDSISV----TQAVIFCNTRRKV--------------EELTTKLRNDKFTVSAI------ 289
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ + + +R + F G ++L+ST LA G+++ +++I
Sbjct: 290 -----------------YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 73/364 (20%), Positives = 144/364 (39%), Gaps = 95/364 (26%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q R + D ++ A +G GKT ++ILQQ+ L+ + + +AP
Sbjct: 66 IQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDLK--------ATQALVLAP 116
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEK-WDI 610
+ L + +VV L + + G + + Q+E IIV TP + +D+
Sbjct: 117 TRELAQQIQKVVMALGDYM---GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM 173
Query: 611 ITRKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLS 667
+ R+ + +K+ ++DE +L +RG + I + + ++V LS
Sbjct: 174 LNRRYLS---PKYIKMFVLDEADEML--SRGFKDQIYDI-------FQKLNSNTQVVLLS 221
Query: 668 ATLPN--YEDVALFLR----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721
AT+P+ E F+R + ++K + + Q Y I V++ + + D
Sbjct: 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEG------IRQFY--INVEREEWKLDTLCD 273
Query: 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781
L YE + Q +IF+++R++ D L +
Sbjct: 274 L-YETLTI----TQAVIFINTRRKV--------------DWLTEKMHAR----------- 303
Query: 782 DMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839
F + H M + +R ++ F G +VL++T LA G+++
Sbjct: 304 --------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349
Query: 840 TVII 843
+++I
Sbjct: 350 SLVI 353
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
VQ + D +++ A +G GKT V L L L +I+ +AP
Sbjct: 50 VQLKAIPLGRCGLD-LIVQAKSGTGKTCVFSTIALDSLVLENLS--------TQILILAP 100
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK-WDIIT 612
+ + + V+ + + M ++ G L++ ++++ I V +P + +I
Sbjct: 101 TREIAVQIHSVITAIGIK--MEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE 158
Query: 613 RKSGDRTYTQLVKLLIIDEI-HLLHDNRGPVLESIVARTVRQIET----TKEHIRLVGLS 667
+ ++L I+DE LL G E QI +++ +S
Sbjct: 159 LDYLN---PGSIRLFILDEADKLL--EEGSFQE--------QINWIYSSLPASKQMLAVS 205
Query: 668 ATLP 671
AT P
Sbjct: 206 ATYP 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1665 | ||||
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 1e-44 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 3e-30 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 2e-10 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-17 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 6e-17 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 1e-16 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 6e-14 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 4e-07 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 5e-12 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 3e-10 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-11 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 3e-09 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 8e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-08 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 1e-05 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 3e-08 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-06 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 1e-06 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 5e-04 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-06 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 8e-06 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 1e-05 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 3e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 4e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 0.002 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-04 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 2e-04 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-04 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 0.003 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 1e-44
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLK 1086
L + S + E++ + +R E L +L +VP + +P K N+LLQA++S+++
Sbjct: 5 GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 64
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
L L SD I A RL++A +++ GW A A+ L++MVT+ MWS + L+Q
Sbjct: 65 LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQ 123
Query: 1147 FNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQFP 1197
+E + + K + ++ +E L++ + +F +++P
Sbjct: 124 LPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 117 bits (293), Expect = 3e-30
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 697 PVPLSQQ-YIGIQVKKPLQRFQLMNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAI 753
PVPL + ++ F + +E++V VA VL+F +R+ KTA +
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
++++ + + + IL+ + + S L + + G A HHAG+ G R++VE
Sbjct: 61 SAI------TAKYVENEGLEKAILEEN-EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVE 113
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
D F G+++V+V+T TLA GVNLPA VI++ ++ G + + QM GRAGR
Sbjct: 114 DAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGR 170
Query: 874 PQYDSYGEGIIITGHSELRYYL 895
P D GE III G + +
Sbjct: 171 PGMDERGEAIIIVGKRDREIAV 192
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 59.5 bits (143), Expect = 2e-10
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 7/130 (5%)
Query: 1537 PVPLEIHIQ-GVDITNFEARMQAMTKPTFTAIV-QHAKNEKPALVFVPSRKYVRLTAVDL 1594
PVPL + + F+ + F +V + LVF +R+ TAV L
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
++ + + E + L +R G + H GL + VV
Sbjct: 61 SAITAKYVENEGLEKAILEEN-----EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDA 115
Query: 1655 FEAGKIKICY 1664
F G IK+
Sbjct: 116 FRRGNIKVVV 125
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 79.2 bits (194), Expect = 4e-17
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 32/227 (14%)
Query: 477 IKISEMPEWAQPAF------KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
+K+ E+ E +G+ +L Q+ + S N+LL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEM 59
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
++++ K +YV P++AL E + ++ ++
Sbjct: 60 AMVREA-----------IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR 108
Query: 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVAR 649
+ I+ T+ + +I ++ L++DEIHLL RG LE +V +
Sbjct: 109 DEHLGDCDIIVTTSEKADSLIRNRASWIKAV---SCLVVDEIHLLDSEKRGATLEILVTK 165
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
+ + +R++GLSAT PN ++A +L + + + +R
Sbjct: 166 ----MRRMNKALRVIGLSATAPNVTEIAEWLDADY------YVSDWR 202
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.9 bits (193), Expect = 6e-17
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 1326 ALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384
++ + L +G + P Q + +++ N+L+A PT +GKT+ +E A++R K
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK 67
Query: 1385 ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444
+++Y+ PL ALA E+Y ++ GL + + TG+ + L II++
Sbjct: 68 -----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS--TGDYESRDEHLGDCDIIVT 120
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIR 1503
T EK D+L + +++ VS ++DE+HL+ + G LE++V++MR + + R
Sbjct: 121 TSEKADSL--IRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL----R 174
Query: 1504 IVALSTSLANAKDLGEWIGA 1523
++ LS + N ++ EW+ A
Sbjct: 175 VIGLSATAPNVTEIAEWLDA 194
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.5 bits (183), Expect = 1e-16
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 904 IESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKED 961
I S+ + L + I G + +E ++ T+ + + +
Sbjct: 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------- 48
Query: 962 ITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI 1008
+ + L+ +V T LG + S YI
Sbjct: 49 -------SYELERVVRQLENWGMVVEAAH---LAPTKLGSLVSRLYI 85
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 70.4 bits (171), Expect = 6e-14
Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
E+L+L+ L+ G++ F P Q ++ + + D LV PTG GK++C
Sbjct: 4 AEVLNLESGAKQVLQE------TFGYQQFRPGQEEIIDTVLSGRD-CLVVMPTGGGKSLC 56
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+ L + V ++PL +L K++ + + + + +
Sbjct: 57 YQIPALLLN--------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM 108
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493
GQI + + + + L +DE H I G + +
Sbjct: 109 TGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168
Query: 1494 IASQVENKIRIVALSTSLANA--KDLGEWIG 1522
Q + +AL+ + + +D+ +G
Sbjct: 169 R--QRFPTLPFMALTATADDTTRQDIVRLLG 197
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 50.4 bits (119), Expect = 4e-07
Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 20/195 (10%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G Q Q + + LS D L+ PTG GK+ + L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRD-CLVVMPTGGGKSLCYQIPALLLNG-------------- 66
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS-GDQTLTRQQIEETQIIVTTPEKWDI 610
V V+P+ +L+ + V L + Q QI + +
Sbjct: 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERL 126
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
+ + LL +DE H + + Q+ + + L+AT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATA 184
Query: 671 PNY--EDVALFLRVN 683
+ +D+ L +N
Sbjct: 185 DDTTRQDIVRLLGLN 199
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.7 bits (157), Expect = 5e-12
Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 12/171 (7%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L + + A+ +GF+ IQ +V + N + N++ A TGSGKT ++ +
Sbjct: 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIII 1443
+ + + D +++ ++ G A+ +K L+ I++
Sbjct: 71 NGIEAIILTPTRE----LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVV 126
Query: 1444 STPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + D ++R ++ V FI+DE + G +E I++
Sbjct: 127 GTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 59.7 bits (144), Expect = 3e-10
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
KG + +Q +V L+ NI+ A TG+GKT + +++ ++
Sbjct: 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL---------VNENNG 72
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK- 607
+ + + P + L +V + + ++K+ ++ G + + Q ++ I+V TP +
Sbjct: 73 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRI 132
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIH-LLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666
D I R + + + VK I+DE +L+ +E I+ + +
Sbjct: 133 LDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI-------LLF 182
Query: 667 SATLPN 672
SAT+P
Sbjct: 183 SATMPR 188
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 64.6 bits (156), Expect = 2e-11
Identities = 49/376 (13%), Positives = 88/376 (23%), Gaps = 103/376 (27%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
++ GAGKT + I+++ + + +AP + + AE+
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEM 54
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
L Y + + + + + + L
Sbjct: 55 EEALRGLPIRYQT--------PAIRAEHTGREIVDLMCHATFTMRLLSPIRVPN---YNL 103
Query: 627 LIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+I+DE H SI AR + ++AT P D
Sbjct: 104 IIMDEAHFTDPA------SIAARGYISTRVEMGEAAGIFMTATPPGSRD----------- 146
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
F S P+ ++ I + + K + + FV S K
Sbjct: 147 ---PFPQSNAPIMDEEREIPERSWNSGHEWVTDF------------KGKTVWFVPSIKAG 191
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A +R
Sbjct: 192 NDIAACLRK-------------------------------------NGKKVIQLSRKTFD 214
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI-----YNPEKGAWTE--- 858
+ +V+T G N A VI + + E+
Sbjct: 215 SEYIKTR----TNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPM 270
Query: 859 -LSPLDIMQMLGRAGR 873
++ Q GR GR
Sbjct: 271 PVTHSSAAQRRGRVGR 286
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
++ G+GKT AI+ ++A + G+ R + +AP +A E +
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIV---REAIKRGL-RTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
+ + + + R V +L I+DE H
Sbjct: 66 QTPAIRAEHTGREIV---------DLMCHA---TFTMRLLSPIRVPNYNLIIMDEAHFTD 113
Query: 1478 GQGGPVLEVI 1487
I
Sbjct: 114 PASIAARGYI 123
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.8 bits (136), Expect = 3e-09
Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 20/206 (9%)
Query: 482 MPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRN 541
+ E+ + K + + +Q K L ++ APTG GKT+ + L
Sbjct: 30 LKEFVEFFRKCVGEPRAIQKMWAKRILRK-ESFAATAPTGVGKTSFGLAMSLFLA----- 83
Query: 542 DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQII 601
+ + P LV + + + V L G + E+ +
Sbjct: 84 ------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 137
Query: 602 VTTPEKWDIIT---RKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA-----RTVRQ 653
+IT S + +D++ + V + + +
Sbjct: 138 QNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTK 197
Query: 654 IETTKEHIRLVGLSATLPNYEDVALF 679
+ L+ +AT + LF
Sbjct: 198 SWVGEARGCLMVSTATAKKGKKAELF 223
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 49.9 bits (118), Expect = 8e-07
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 15/198 (7%)
Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
L P L E + IQ + + APTG GKT
Sbjct: 21 LCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKES-FAATAPTGVGKTSFGLAMS 79
Query: 1379 LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438
L K R I P L + K+ + G+ L G + EK
Sbjct: 80 LFLALK-----GKRCYVIFPTSLLVIQAAETIR-KYAEKAGVGTENLIGYYHGRIPKREK 133
Query: 1439 GQIIISTPEK---WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS-----R 1490
+ + K + + +D++ I V +++
Sbjct: 134 ENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYD 193
Query: 1491 MRYIASQVENKIRIVALS 1508
++ + E + ++ +
Sbjct: 194 LKTKSWVGEARGCLMVST 211
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 27/164 (16%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +L GAGKT + IL + A R +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRV---------------- 47
Query: 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLL 627
+M + T + ++ + R +++
Sbjct: 48 ----VLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNW-EVI 102
Query: 628 IIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
I+DE H L SI AR + ++AT P
Sbjct: 103 IMDEAHFLDP------ASIAARGWAAHRARANESATILMTATPP 140
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 22/156 (14%)
Query: 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412
+ ++ G+GKT IL + +R + +AP + E +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR----LRTLVLAPTRVVLSEMKEAFHG 58
Query: 1413 KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472
+ + L+ R + V + I+DE
Sbjct: 59 LDVKFHTQAFSAHGSGREVI------------DAMCHATLTYRMLEPTRVVNWEVIIMDE 106
Query: 1473 LHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
H + R R N+ + ++
Sbjct: 107 AHFLDPASIAARGWAAHRARA------NESATILMT 136
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+ + Q Q +Y + N L+ PTG GKT +A++ +L
Sbjct: 5 RDLIQPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRL----------TKYG 52
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K++ +AP K LV + + + K+ L+G+++ + + V I
Sbjct: 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI 112
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + V L++ DE H N R+ + ++ ++GL+A+
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGNYAY------VFIAREYKRQAKNPLVIGLTASP 166
Query: 671 PNYEDVALFLRVNLE 685
+ + + + NL
Sbjct: 167 GSTPEKIMEVINNLG 181
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 12/179 (6%)
Query: 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403
Q ++ T N L+ PTG GKT+ A++ + ++ G + +AP + L
Sbjct: 12 IYQEVIYAKCKET--NCLIVLPTGLGKTLI---AMMIAEYRLTKYGGK-VLMLAPTKPLV 65
Query: 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1463
+ + F ++V LTGE + + + + + + R ++
Sbjct: 66 LQHAESFRRLFN-LPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLE 124
Query: 1464 QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
VSL + DE H G V R Q +N + I ++ + + + E I
Sbjct: 125 DVSLIVFDEAHRAVGNYAYVF-----IAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 47.5 bits (112), Expect = 1e-06
Identities = 24/156 (15%), Positives = 39/156 (25%), Gaps = 31/156 (19%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573
L APTG+GK+ Q YK++ + P A +S
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKA 56
Query: 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633
+ + T + + ++I DE H
Sbjct: 57 HGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSG------------GAYDIIICDECH 104
Query: 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ TV T +V +AT
Sbjct: 105 STDATSILGI-----GTVLDQAETAGARLVVLATAT 135
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 20/154 (12%), Positives = 36/154 (23%), Gaps = 26/154 (16%)
Query: 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
+ + APTGSGK+ A + + + P A
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAAYAAQG--------YKVLVLNPSVAATLGFGAYMSKAH 57
Query: 1415 GQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G +R T T + G+ + I DE H
Sbjct: 58 GVDPNIRTGVRTITTGSPITYSTYGKF-------------LADGGCSGGAYDIIICDECH 104
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
+ ++ + +V +
Sbjct: 105 STDATSILGIGTVLDQAET-----AGARLVVLAT 133
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 8/169 (4%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L ++ GF+ + IQ + + D VL A +G+GKT F+I +
Sbjct: 17 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGT--FSIAALQRID 73
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV-VELTGETAMDLKLLEKGQIIIS 1444
+ +A+ +AP LA + + D + L QI++
Sbjct: 74 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVG 133
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + +R + R ++ +FI+DE + G + I + +
Sbjct: 134 TPGRVFDNIQRRRFR--TDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 180
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 46.8 bits (110), Expect = 8e-06
Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 14/177 (7%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRN---- 1381
L + + ++ PIQ + D ++ A TGSGKT I+ +
Sbjct: 28 LDPTIRNNILLASYQRPTPIQKNAIPAILEHRD-IMACAQTGSGKTAAFLIPIINHLVCQ 86
Query: 1382 ---HQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM---DLKL 1435
Q+ S+T + + +AP LA + + + +R + G ++
Sbjct: 87 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRSCVVYGGADTHSQIREV 145
Query: 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
++++TP + + K + + + ++ P + I+
Sbjct: 146 QMGCHLLVATPGRLVDFIEKNKI-SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 201
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-05
Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 11/171 (6%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
LR L +Y GF+ + IQ + + D V+ + +G+GKT ++L+
Sbjct: 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRD-VIAQSQSGTGKTATFSISVLQCLDIQ 82
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+A+ +AP LA + + G + ++ G T + KL ++
Sbjct: 83 VRE--TQALILAPTRELAVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVV 139
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + + RR R ++ ++DE + +G + + +
Sbjct: 140 AGTPGRVFDMIRRRSLRTRAIKM--LVLDEADEMLNKGFKEQIYDVYRYLP 188
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 3e-05
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L +Y GF+ + IQ + D V+ A +G+GKT FAI Q
Sbjct: 19 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTAT--FAISILQQIE 75
Query: 1386 SETGVMRAVYIAPLEALA---KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQII 1442
+ +A+ +AP LA ++ G + + +E II
Sbjct: 76 LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHII 135
Query: 1443 ISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
+ TP + +D L+RR+ KY++ L DE+ G + + I ++
Sbjct: 136 VGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFK--DQIYDIFQKLN 184
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 44.9 bits (105), Expect = 4e-05
Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 22/152 (14%)
Query: 546 FNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTP 605
+ KI+ + P AL ++ + + ++++ G + + + ++V T
Sbjct: 153 LENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTW 212
Query: 606 EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665
+ ++ + +++ DE HL G + SI++ + G
Sbjct: 213 QTVVKQPKEWFSQ-----FGMMMNDECHLA---TGKSISSIISG------LNNCMFKF-G 257
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRP 697
LS +L + + + F ++P
Sbjct: 258 LSGSLRDGKA----NIMQYV---GMFGEIFKP 282
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 40.3 bits (93), Expect = 0.002
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
PT +G+++ + + + I P AL + D+ + + +
Sbjct: 135 LPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDF-VDYRLFSHAMIK 189
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
++ G + D K +++ T + + +++ Q + + DE HL G
Sbjct: 190 KIGGGASKDDKYKNDAPVVVGTWQTV-----VKQPKEWFSQFGMMMNDECHLA---TGKS 241
Query: 1484 LEVIVSRMR 1492
+ I+S +
Sbjct: 242 ISSIISGLN 250
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 43.7 bits (102), Expect = 1e-04
Identities = 44/299 (14%), Positives = 101/299 (33%), Gaps = 47/299 (15%)
Query: 579 VKVRELSGDQTLTRQQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637
V+V +L R+ + E + + + ++ S D ++++ I +
Sbjct: 7 VRV-DLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKG 65
Query: 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSA---TLPNYEDVALFLRVNLEKGLFYFDNS 694
N + ++ E + GLSA + + A K +F
Sbjct: 66 NHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 125
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
+ + L Q I + P + + ++ + + ++++F + R+ K +
Sbjct: 126 KKAISLLVQAKEIGLDHP--KMDKLKEII-REQLQRKQNSKIIVFTNYRETAKKIVNELV 182
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
++ K + G+++ +++L+ D
Sbjct: 183 KDGIKAKRF----------------VGQASK-------------ENDRGLSQREQKLILD 213
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
F G VLV+T+ G+++P +++ Y P S + +Q GR GR
Sbjct: 214 EFARGEFNVLVATSVGEEGLDVPEVDLVV----FYEPVP------SAIRSIQRRGRTGR 262
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L ++ GF+ +PIQ + V D +L A G+GKT L +
Sbjct: 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKP- 65
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+ ++A+ + P LA + + G+ G+ + TG T + L+L E I+
Sbjct: 66 -KLNKIQALIMVPTRELALQTSQVVRT-LGKHCGISCMVTTGGTNLRDDILRLNETVHIL 123
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
+ TP + K + + ++ ++E I+S +
Sbjct: 124 VGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP 172
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L ++ G++ +PIQ + + + D +L A G+GK+ +L
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLK 68
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+ ++A+ I P LA + + G +V+ TG T + ++L + ++
Sbjct: 69 KDN--IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV 126
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
I+TP + + K + + + L+ ++E I+ +
Sbjct: 127 IATPGRILD-LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 0.003
Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 15/187 (8%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L A+ GF+H + +Q + D VL A +G GKT A L+ +
Sbjct: 8 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQLEPV 66
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE----KGQI 1441
+ + + + LA + +++E ++V G ++ I
Sbjct: 67 TGQ--VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 124
Query: 1442 IISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK 1501
++ TP + L+ + ++ + FI+DE + Q +V + I ++
Sbjct: 125 VVGTPGRI--LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV-----QEIFRMTPHE 177
Query: 1502 IRIVALS 1508
+++ S
Sbjct: 178 KQVMMFS 184
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1665 | |||
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 100.0 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.97 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.97 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.96 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.96 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.96 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.96 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.96 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.96 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.95 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.95 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.95 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.95 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.95 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.95 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.95 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.94 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.94 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.93 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.92 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.91 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.89 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.88 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.88 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.88 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.88 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.88 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.87 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.85 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.84 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.84 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.82 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.81 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.81 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.81 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.79 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.78 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.77 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.74 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.69 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.66 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.66 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.65 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.64 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.64 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.6 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.58 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.58 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.57 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.54 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.52 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.51 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.48 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.47 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.44 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.42 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.37 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.31 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.24 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.12 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.1 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.05 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.01 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.99 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.86 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.86 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.82 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 98.51 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 98.42 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.34 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.31 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.3 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.28 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.27 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.23 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.19 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 98.06 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.05 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.05 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.02 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.99 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.93 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.8 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.8 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.65 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.53 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.44 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.4 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.24 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.24 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.13 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.13 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.07 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.05 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.8 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.74 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 96.73 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.62 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.42 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 96.35 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.29 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 96.02 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 95.99 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.55 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.4 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.83 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.76 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 94.7 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.58 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 94.41 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 94.07 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 93.85 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.75 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.7 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.41 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.36 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.26 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.44 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.31 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.01 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.53 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 90.46 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.17 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.52 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 89.3 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.13 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 88.85 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.44 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.15 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.79 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.33 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.32 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.29 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.21 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.87 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 86.75 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 86.73 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.56 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 86.1 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.02 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.15 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.91 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.9 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.34 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.9 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 82.66 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 82.32 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 81.94 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.87 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.48 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-35 Score=265.27 Aligned_cols=172 Identities=26% Similarity=0.428 Sum_probs=164.9
Q ss_pred CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 989899985079347879678148999999850399988898-9892799999999987498889983030199999929
Q 000324 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSA 1103 (1665)
Q Consensus 1025 ~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~p~~~~-~~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~a 1103 (1665)
...++|+++|.|.||+++++|++|+.++.+|.+.+|+|++++ +++|+.|+++||||||+|.+++ .+|.+|+.||++++
T Consensus 2 ~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~-~sl~~D~~~I~~~~ 80 (176)
T d2q0zx1 2 KVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKA 80 (176)
T ss_dssp CHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHH
T ss_conf 58899999818686622887845899999999868987766665777899999999998489898-89999999999989
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHC-
Q ss_conf 999999999999729999999999999998725679998633469999999999991898-711001589478733313-
Q 000324 1104 GRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR- 1181 (1665)
Q Consensus 1104 ~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~- 1181 (1665)
+||++||+||+..+||+.++.++++|||||+||+|++++||+||||++++.+++++++++ +++++.+++++|++.+++
T Consensus 81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll~~ 160 (176)
T d2q0zx1 81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQL 160 (176)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCC
T ss_conf 99999999999877878999999999999998649999974397869999999998779998999985999999999769
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 8322689999984089
Q 000324 1182 FPKMGRTLHKFVHQFP 1197 (1665)
Q Consensus 1182 ~~~~~~~i~~~~~~~P 1197 (1665)
.++++++|.++++.||
T Consensus 161 ~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 161 TDSQIADVARFCNRYP 176 (176)
T ss_dssp CHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 9999999999997582
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=100.00 E-value=5.5e-33 Score=246.93 Aligned_cols=286 Identities=16% Similarity=0.131 Sum_probs=183.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 88389909998248986099999999999984289999998997099999354878999999998731038949999978
Q 000324 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (1665)
Q Consensus 507 ~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltG 586 (1665)
++..++++++.||||||||++++.+++...... +.+++|++|+++|+.|+++.|+.... .+.....
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~----------~~~~lvi~Ptr~La~q~~~~l~~~~~----~~~~~~~ 70 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEMEEALRGLPI----RYQTPAI 70 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH----------TCCEEEEESSHHHHHHHHHHTTTSCC----BCCC---
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC----------CCEEEEECCHHHHHHHHHHHHHCCCC----CEEEEEE
T ss_conf 864699499997999978799999999998726----------99899982389999999999854875----2111378
Q ss_pred CCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88636764403649992723599998314998644540089992531001688048999999999998511687009999
Q 000324 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (1665)
+ ........++++||+.+...... ...+..++++|+||+|++.+. +..+..++.... .....+++++
T Consensus 71 ~----~~~~~~~~i~~~t~~~l~~~~~~---~~~~~~~~~vViDE~H~~~~~-~~~~~~~l~~~~-----~~~~~~~v~~ 137 (305)
T d2bmfa2 71 R----AEHTGREIVDLMCHATFTMRLLS---PIRVPNYNLIIMDEAHFTDPA-SIAARGYISTRV-----EMGEAAGIFM 137 (305)
T ss_dssp ---------CCCSEEEEEHHHHHHHHTS---SSCCCCCSEEEEESTTCCSHH-HHHHHHHHHHHH-----HHTSCEEEEE
T ss_pred E----ECCCCCCCCCCCCCHHHHHHHHC---CCCCCCEEEEEEEEEEECCHH-HHHHHHHHHHHH-----CCCCCEEEEE
T ss_conf 5----01257653013774899999845---853154008985301112520-578889999841-----6653138994
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
Q ss_conf 33378968899997002468569834997542322899852037635788987799999999983898299996582679
Q 000324 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746 (1665)
Q Consensus 667 SATl~n~~dva~~l~~~~~~~~~~f~~~~rp~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~ 746 (1665)
|||.++... .+.....| .......+.......... .+ ...+++++|||++++++
T Consensus 138 SAT~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~lvf~~~~~~~ 191 (305)
T d2bmfa2 138 TATPPGSRD--------------PFPQSNAP--IMDEEREIPERSWNSGHE--------WV--TDFKGKTVWFVPSIKAG 191 (305)
T ss_dssp CSSCTTCCC--------------SSCCCSSC--EEEEECCCCCSCCSSCCH--------HH--HSSCSCEEEECSCHHHH
T ss_pred ECCCCCCEE--------------EECCCCCC--CEEEEEECCHHHHHHHHH--------HH--HHHCCCEEEEECCHHHH
T ss_conf 157876433--------------40234786--127998615888999999--------99--96079989996309999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999974101322445556801399998521013641034210785799368999788999999970999776874
Q 000324 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (1665)
Q Consensus 747 ~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVa 826 (1665)
..++..|.+.+.. +..+|+++....| ..|.+|..+++||
T Consensus 192 ~~l~~~L~~~~~~-------------------------------------~~~l~~~~~~~~~----~~~~~~~~~~lva 230 (305)
T d2bmfa2 192 NDIAACLRKNGKK-------------------------------------VIQLSRKTFDSEY----IKTRTNDWDFVVT 230 (305)
T ss_dssp HHHHHHHHHHTCC-------------------------------------CEECCTTCHHHHG----GGGGTSCCSEEEE
T ss_pred HHHHHHHHHCCCC-------------------------------------EEEECCCCHHHHH----HHHHCCCHHHHHH
T ss_conf 9999999867998-------------------------------------9995783847777----5431000113555
Q ss_pred CCCCCCCCCCCCEEEEEEC-----CCCCCCCCCC----CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECC
Q ss_conf 3000024589862899963-----5013799997----543899889843123689999982289999088
Q 000324 827 TATLAWGVNLPAHTVIIKG-----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 827 T~tla~GVnlP~~~vVI~~-----t~~yd~~~g~----~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
|+++++|+|++...||..+ ...|+++.+. ..++|..+|+||+|||||.| ..|.+++++..
T Consensus 231 T~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~--~~~~~~~~~~~ 299 (305)
T d2bmfa2 231 TDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP--KNENDQYIYMG 299 (305)
T ss_dssp CGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSS--SCCCEEEEECS
T ss_pred HHHHHHCCCCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCC--CCCEEEEEECC
T ss_conf 6788725788840899758741465733898763880445699889832411868289--99269999899
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.2e-30 Score=225.25 Aligned_cols=185 Identities=18% Similarity=0.308 Sum_probs=153.0
Q ss_pred CCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 2334468999863-999899989999999873999199987899738999999999999850489980999985539999
Q 000324 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1325 ~~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa 1403 (1665)
..|.....+++.. ||..|+|+|.+++|.+++|++ +++.||||||||+||.+|+++++..... .+++++++|++||+
T Consensus 22 l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~d-vi~~a~TGSGKTlayllPil~~l~~~~~--~~~~lil~PtreLa 98 (222)
T d2j0sa1 22 MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRD-VIAQSQSGTGKTATFSISVLQCLDIQVR--ETQALILAPTRELA 98 (222)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHTCCTTSC--SCCEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHCCCCCCCCCCCCC--CCEEEEECCHHHHH
T ss_conf 79899999999987999999999999999987998-6997574341454404540110033346--74257755528888
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHH---CCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999999998617889589999488721120---0279959998825689999720002467870189860453128888
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1404 ~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (1665)
.|++..++ .++...++++..+.|+...+.. +..+++|+|+||+++..+.+. ....+.+++++|+||||.+.+.+
T Consensus 99 ~Qi~~~~~-~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~ 175 (222)
T d2j0sa1 99 VQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKG 175 (222)
T ss_dssp HHHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHH-HHHCCCCEEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHHHCCCC--CCCCCCCCEEEEECCHHHHHHCC
T ss_conf 99999999-9847563458887511210246787514873886798757761200--10344423035542246765257
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHH
Q ss_conf 6059999999999986238997099995448996-8999986
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (1665)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl 1521 (1665)
+...+..|...+++..|++++|||+++. .++++++
T Consensus 176 ------f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~ 211 (222)
T d2j0sa1 176 ------FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKF 211 (222)
T ss_dssp ------THHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGT
T ss_pred ------CHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf ------399999999968988879999972888999999998
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-28 Score=214.17 Aligned_cols=187 Identities=20% Similarity=0.266 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 334468999863-9998999899999998739991999878997389999999999998504899809999855399999
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
.|+....+++.. ||..|+|+|.++++.+++|+| ++++||||||||+||.+|++.++.... .++++++++|+++|+.
T Consensus 9 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllP~l~~~~~~~--~~~~~lil~pt~el~~ 85 (206)
T d1veca_ 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLKK--DNIQAMVIVPTRELAL 85 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCC-EEEECCSSSTTHHHHHHHHHHHCCTTS--CSCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCCHHHCCCCCC--CCCCEEEEEECCHHHH
T ss_conf 9599999999987999999999999999986998-874436740011212464132021025--6752499840301668
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHH---CCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 999999998617889589999488721120---02799599988256899997200024678701898604531288886
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (1665)
|++..+........+..+....|+...... +...++|+|+||+++..+... ....+.+++++|+||||.+.+.+
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~- 162 (206)
T d1veca_ 86 QVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD- 162 (206)
T ss_dssp HHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT-
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCC--HHCCCCCCCEEEEECCCCCCCCC-
T ss_conf 999999987511567642123677408889998875167089479633112331--10001554069984142001122-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHCC
Q ss_conf 059999999999986238997099995448996-899998636
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGA 1523 (1665)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~ 1523 (1665)
+...+..|...++++.|++++|||+++. .++++.+..
T Consensus 163 -----f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~ 200 (206)
T d1veca_ 163 -----FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp -----THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred -----HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCC
T ss_conf -----29999999986899887999994499899999999789
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3e-28 Score=213.34 Aligned_cols=185 Identities=21% Similarity=0.323 Sum_probs=140.7
Q ss_pred CCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 334468999863-9998999899999998739991999878997389999999999998504899809999855399999
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
.|.....+++.. ||..|+|+|.+++|.++.|++ ++++||||||||++|.+|+++++... ..++++++++|+++|+.
T Consensus 18 ~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllp~l~~i~~~--~~~~~alil~Pt~eL~~ 94 (218)
T d2g9na1 18 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELD--LKATQALVLAPTRELAQ 94 (218)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHEECCC--CCCCCEEEECCCCHHHH
T ss_conf 9799999999988999999999999999976998-89972562544554331022200036--66751899824511235
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHH----CCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 999999998617889589999488721120----0279959998825689999720002467870189860453128888
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (1665)
Q Consensus 1405 q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~----~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~ 1480 (1665)
|++..++ .+....+..+..+.++...... ....++|+|+||+++..++.+ ....+.+++++|+||||.+.+.+
T Consensus 95 Q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~--~~~~~~~l~~lVlDEaD~ll~~~ 171 (218)
T d2g9na1 95 QIQKVVM-ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRG 171 (218)
T ss_dssp HHHHHHH-HHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT
T ss_pred HHHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHC--CCCCCCCCEEEEEEECCHHHCCC
T ss_conf 6777776-51244321687630245306778887648877999678157778862--88324653489864021021276
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHC
Q ss_conf 6059999999999986238997099995448996-89999863
Q 000324 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIG 1522 (1665)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~ 1522 (1665)
+...+..|...++++.|++++|||+++. .++++.+.
T Consensus 172 ------f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l 208 (218)
T d2g9na1 172 ------FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM 208 (218)
T ss_dssp ------CHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHC
T ss_conf ------0899999999689998699998059989999999988
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.7e-28 Score=211.91 Aligned_cols=187 Identities=21% Similarity=0.304 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 334468999863-9998999899999998739991999878997389999999999998504899809999855399999
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
.|.....++++. ||.+|+|+|.+++|.+++|+| +++.||||||||+||.+|+++.+... ..++++++++|+++|+.
T Consensus 7 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~A~TGsGKTla~~lp~l~~~~~~--~~~~~~lil~PtreL~~ 83 (207)
T d1t6na_ 7 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCHTRELAF 83 (207)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCC-EEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCEEEEECCC--CCCCEEEEEECCCHHHH
T ss_conf 8499999999987999999999999999984998-57772233321200134403210246--77862899851220367
Q ss_pred HHHHHHHHHHCCC-CCCEEEEEECCCCCCHH---C-CCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 9999999986178-89589999488721120---0-27995999882568999972000246787018986045312888
Q 000324 1405 ERYRDWEIKFGQG-LGMRVVELTGETAMDLK---L-LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (1665)
Q Consensus 1405 q~~~~~~~~f~~~-~~~~V~~ltG~~~~~~~---~-l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~ 1479 (1665)
|+++.++ .+... ...++..++|+...... . -..+||+|+||+++..+.+. ....+.+++++|+||||.+.+.
T Consensus 84 qi~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~--~~~~l~~l~~lVlDEaD~ll~~ 160 (207)
T d1t6na_ 84 QISKEYE-RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQ 160 (207)
T ss_dssp HHHHHHH-HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHH-HHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHCCC--CCEECCCCCEEEHHHHHHHHHC
T ss_conf 8999999-998438875167884565488999998736899899085464320258--8255430303402344445413
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHCC
Q ss_conf 86059999999999986238997099995448996-899998636
Q 000324 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGA 1523 (1665)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~ 1523 (1665)
.| +...+..|...+++..|++++|||+++. .++++++..
T Consensus 161 ~~-----~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~ 200 (207)
T d1t6na_ 161 LD-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ 200 (207)
T ss_dssp HH-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCS
T ss_pred CC-----CHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCC
T ss_conf 78-----59999999974889887999940088899999999889
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=4.2e-28 Score=212.26 Aligned_cols=183 Identities=22% Similarity=0.366 Sum_probs=103.3
Q ss_pred CCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
Q ss_conf 34468999863-99989998999999987399919998789973899999999999985048998099998553999999
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q 1405 (1665)
|..+..+++.. ||..|+|+|.++++.+++++.|++++||||||||++|.+|++.+... ..+++++|++|+++|+.|
T Consensus 11 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~---~~~~~~lil~pt~~l~~q 87 (208)
T d1hv8a1 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILTPTRELAIQ 87 (208)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCEEECCCCCCCCC---CCCCCEEEEEECCCCCHH
T ss_conf 89999999998799999999999999998499974644100344440020333211112---467506998403332203
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCC--HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHH
Q ss_conf 999999986178895899994887211--200279959998825689999720002467870189860453128888605
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (1665)
Q Consensus 1406 ~~~~~~~~f~~~~~~~V~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~ 1483 (1665)
++..++ .+....+.++..++|+.... .+.+.++||+|+||+++..++++ ....+.+++++|+||+|.+.+.+
T Consensus 88 ~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~--~~~~~~~l~~lViDEad~l~~~~--- 161 (208)
T d1hv8a1 88 VADEIE-SLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG--- 161 (208)
T ss_dssp HHHHHH-HHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT---
T ss_pred HHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEECHHHHHHHHHC--CCCCCCCCCEEEEECHHHHHCCC---
T ss_conf 345566-650367707998528978699998608999999886999999976--99776668699998848761088---
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHH
Q ss_conf 9999999999986238997099995448996-8999986
Q 000324 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (1665)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl 1521 (1665)
....+..|...++++.|++++|||+++. .++++.+
T Consensus 162 ---~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~ 197 (208)
T d1hv8a1 162 ---FIKDVEKILNACNKDKRILLFSATMPREILNLAKKY 197 (208)
T ss_dssp ---THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf ---717799999858998859999702798999999997
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.2e-28 Score=210.22 Aligned_cols=187 Identities=22% Similarity=0.304 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 334468999863-9998999899999998739991999878997389999999999998504899809999855399999
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
.|.....+++.. ||.+|+|+|.++++.++.|+| ++++||||||||++|.+|+++++... ..+|++++++|+++++.
T Consensus 16 ~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a~~lp~i~~l~~~--~~~~~~lil~pt~el~~ 92 (212)
T d1qdea_ 16 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELAL 92 (212)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCC--CCCCCEEEECCCHHHHH
T ss_conf 9799999999987999999999999999986998-77445653010046676667665036--77861489704488866
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCC--HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 9999999986178895899994887211--20027995999882568999972000246787018986045312888860
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (1665)
Q Consensus 1405 q~~~~~~~~f~~~~~~~V~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~ 1482 (1665)
|.+..+. .+.......+..+.|+.... ...+++++|+|+||+++..+.+. ....+.+++++|+||||.+.+.+
T Consensus 93 q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~--~~~~l~~l~~lVlDEad~lld~~-- 167 (212)
T d1qdea_ 93 QIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG-- 167 (212)
T ss_dssp HHHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHC-CCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCC--CCEECCCCEEEEEHHHHHHCCCC--
T ss_conf 6665400-122233211136753266167999846991999799755222346--73536864077530244531444--
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHCCC
Q ss_conf 59999999999986238997099995448996-8999986366
Q 000324 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGAT 1524 (1665)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riI~lSATl~n~-~dl~~wl~~~ 1524 (1665)
+...+..+...+++..|++++|||+++. .++++++...
T Consensus 168 ----f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~ 206 (212)
T d1qdea_ 168 ----FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN 206 (212)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred ----HHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCC
T ss_conf ----399999999858988869999861898999999987899
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=4.3e-28 Score=212.17 Aligned_cols=159 Identities=32% Similarity=0.470 Sum_probs=132.3
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 89829999658267999999999974101322445556801399998521013641034210785799368999788999
Q 000324 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (1665)
Q Consensus 732 ~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~ 811 (1665)
.++++||||+||+.|+.+|..|......... . ......+........+..|.+++.+||++|||||++.+|..
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ 111 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVE------N-EGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 111 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCC------C-SSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHC------H-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 6996899968999999999999998875302------2-57899988751235569999998511788877762566899
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCH
Q ss_conf 99997099977687430000245898628999635013799997543899889843123689999982289999088738
Q 000324 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (1665)
++++|++|.++|||||++++||||+|++++||.+++.||+.. .+++..+|+||+|||||+|.|..|.+++++...+.
T Consensus 112 ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~---~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~ 188 (201)
T d2p6ra4 112 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 188 (201)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE---EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHCCCCEEEEECHHHHHHCCCCCCEEEEECCEECCCCC---CCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCH
T ss_conf 999986798149970418875237997469995142046874---77999999987544689999972599999689884
Q ss_pred HH-HHHHHCC
Q ss_conf 99-9984208
Q 000324 892 RY-YLSLMNQ 900 (1665)
Q Consensus 892 ~~-y~~ll~~ 900 (1665)
.. |.+++..
T Consensus 189 ~~~~k~~~~~ 198 (201)
T d2p6ra4 189 EIAVKRYIFG 198 (201)
T ss_dssp HHHHHTTTSS
T ss_pred HHHHHHHHCC
T ss_conf 9999987635
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=5.1e-28 Score=211.67 Aligned_cols=184 Identities=31% Similarity=0.513 Sum_probs=129.9
Q ss_pred CCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 993358521--899999999999999988389909998248986099999999999984289999998997099999354
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~ 559 (1665)
+++++...+ .||..|+|+|.++++.++++ +|++++||||+|||.++.++++..+.. +.+++|++|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~-~~~il~apTGsGKT~~a~l~i~~~~~~-----------~~~vl~l~P~ 77 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGKSLYVVPL 77 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTC-SCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCCEEEEESS
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC-----------CCCCEEECCC
T ss_conf 3599999999869999999999999999849-998998689985117899999987622-----------5760331662
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-C
Q ss_conf 878999999998731038949999978886367644036499927235999983149986445400899925310016-8
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (1665)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d-~ 638 (1665)
++|+.|+.+.+++.++ ...++...+|+..........++|+++||..++.+.++.. ..+..+++||+||+|.+.+ .
T Consensus 78 ~~L~~q~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~ii~DE~h~~~~~~ 154 (202)
T d2p6ra3 78 RALAGEKYESFKKWEK-IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (202)
T ss_dssp HHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHCCC--HHHHHHHHCCCCHHHHHCCCC
T ss_conf 7899999999999863-2443100026743322122322125401089988875110--011032222465877753554
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8048999999999998511687009999333789688999970024
Q 000324 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (1665)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~~~ 684 (1665)
|+..++.++.++.+ .++++|+|+||||++|++++++||+.++
T Consensus 155 r~~~~~~~l~~i~~----~~~~~~~l~lSATl~n~~~~~~~l~~~~ 196 (202)
T d2p6ra3 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDADY 196 (202)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHCCCCE
T ss_conf 31379999999986----5999838998178875999998708982
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.96 E-value=1e-26 Score=202.46 Aligned_cols=175 Identities=18% Similarity=0.269 Sum_probs=93.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 9999999999999998838990999824898609999999999998428999-999899709999935487899999999
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD-GSFNHSNYKIVYVAPMKALVAEVVGNL 570 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~-g~~~~~~~kii~iaP~kaLa~q~~~~~ 570 (1665)
||..|+++|+++++.++.+ +|++++||||||||++|.+|+++.+....... ......++++++++|+++||.|+.+.+
T Consensus 40 g~~~pt~iQ~~~ip~il~g-~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~ 118 (238)
T d1wrba1 40 SYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 118 (238)
T ss_dssp TCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCHHEEE
T ss_conf 9998989999983664279-978998777777511319999999972221112456777836999535144301001011
Q ss_pred HHHHCCCCCEEEEEECCCCCCHH---HHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-CCCHHHHHH
Q ss_conf 87310389499999788863676---44036499927235999983149986445400899925310016-880489999
Q 000324 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (1665)
Q Consensus 571 ~~~~~~~gi~V~~ltGd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d-~rg~~le~i 646 (1665)
.......++++..++|+.....+ ....++|+|+||+++..+.+... ..+..++++|+||+|.+.+ ++++.++.+
T Consensus 119 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~--~~l~~v~~lViDEaD~ll~~~f~~~i~~I 196 (238)
T d1wrba1 119 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRMLDMGFEPQIRKI 196 (238)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred EECCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEECCHHHHHHHHCCCC--EECCCCCEEEEEHHHHHHHHCCHHHHHHH
T ss_conf 1003578827999944520357776403687344067788776772692--65266412442034455432139999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 99999998511687009999333789
Q 000324 647 VARTVRQIETTKEHIRLVGLSATLPN 672 (1665)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATl~n 672 (1665)
+.++. .......|++++|||++.
T Consensus 197 l~~~~---~~~~~~~Q~il~SAT~~~ 219 (238)
T d1wrba1 197 IEESN---MPSGINRQTLMFSATFPK 219 (238)
T ss_dssp HHSSC---CCCGGGCEEEEEESSCCH
T ss_pred HHHHC---CCCCCCCEEEEEEEECCH
T ss_conf 99843---899899889999632798
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.95 E-value=3.3e-27 Score=205.89 Aligned_cols=192 Identities=17% Similarity=0.269 Sum_probs=148.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC------
Q ss_conf 98778899985223344689998639998999899999998739991999878997389999999999998504------
Q 000324 1313 PTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS------ 1386 (1665)
Q Consensus 1313 ~t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~------ 1386 (1665)
.++.+++.+....+|.. .||..|+|+|.++++.+++|+| ++++||||||||+||.+|++.++....
T Consensus 22 ~F~~l~l~~~l~~~L~~-------~g~~~pt~iQ~~~ip~il~g~d-vvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~ 93 (238)
T d1wrba1 22 NFDELKLDPTIRNNILL-------ASYQRPTPIQKNAIPAILEHRD-IMACAQTGSGKTAAFLIPIINHLVCQDLNQQRY 93 (238)
T ss_dssp SSGGGSCCCSTTTTTTT-------TTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHHHTTCC-----
T ss_pred CHHHCCCCHHHHHHHHH-------CCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 97777989999999998-------7999898999998366427997-899877777751131999999997222111245
Q ss_pred -CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC---HHCCCCCCEEEECHHHHHHHHHHHHCCCCC
Q ss_conf -8998099998553999999999999986178895899994887211---200279959998825689999720002467
Q 000324 1387 -ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYV 1462 (1665)
Q Consensus 1387 -~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l 1462 (1665)
...++++++++|+++|+.|+++.+. .++...++++..++|+.... ......+||+|+||+++..+... ....+
T Consensus 94 ~~~~~~~alil~pt~el~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~--~~~~l 170 (238)
T d1wrba1 94 SKTAYPKCLILAPTRELAIQILSESQ-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--NKISL 170 (238)
T ss_dssp -CCBCCSEEEECSSHHHHHHHHHHHH-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--TSBCC
T ss_pred CCCCCCEEEEECCCHHHHCCHHEEEE-ECCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEECCHHHHHHHHCC--CCEEC
T ss_conf 67778369995351443010010111-0035788279999445203577764036873440677887767726--92652
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCH-HHHHHHH
Q ss_conf 870189860453128888605999999999998623----8997099995448996-8999986
Q 000324 1463 QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV----ENKIRIVALSTSLANA-KDLGEWI 1521 (1665)
Q Consensus 1463 ~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~----~~~~riI~lSATl~n~-~dl~~wl 1521 (1665)
.+++++|+||+|.+.+.+ +...+..+...+ ..+.|++++|||+++. ..+++-+
T Consensus 171 ~~v~~lViDEaD~ll~~~------f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~ 228 (238)
T d1wrba1 171 EFCKYIVLDEADRMLDMG------FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 228 (238)
T ss_dssp TTCCEEEEETHHHHHHTT------CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred CCCCEEEEEHHHHHHHHC------CHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 664124420344554321------3999999999843899899889999632798999999997
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.1e-27 Score=206.10 Aligned_cols=181 Identities=18% Similarity=0.260 Sum_probs=145.5
Q ss_pred CCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 993358521--899999999999999988389909998248986099999999999984289999998997099999354
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~ 559 (1665)
|++....++ .||..|+++|++++|.++.+. |++++||||||||++|.+|+++.+.... ..+++++++|+
T Consensus 24 L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~-dvi~~a~TGSGKTlayllPil~~l~~~~--------~~~~~lil~Pt 94 (222)
T d2j0sa1 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQV--------RETQALILAPT 94 (222)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCCCCCCCCCC--------CCCEEEEECCH
T ss_conf 89999999998799999999999999998799-8699757434145440454011003334--------67425775552
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH---HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 87899999999873103894999997888636764---403649992723599998314998644540089992531001
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~ 636 (1665)
++|+.|+++.+.+..+..++++..++|+.....+. ..+++|+|+||+++..+.++.. ..++.++++|+||||.+.
T Consensus 95 reLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~--~~~~~l~~lVlDEaD~ll 172 (222)
T d2j0sa1 95 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEML 172 (222)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHHHCCCCCC--CCCCCCEEEEECCHHHHH
T ss_conf 888899999999984756345888751121024678751487388679875776120010--344423035542246765
Q ss_pred C-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6-880489999999999985116870099993337896889999700
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~ 682 (1665)
+ ++++.++.++.. .+...|++++|||+++ ++.++.+.
T Consensus 173 ~~~f~~~i~~I~~~-------l~~~~Q~ilfSAT~~~--~v~~l~~~ 210 (222)
T d2j0sa1 173 NKGFKEQIYDVYRY-------LPPATQVVLISATLPH--EILEMTNK 210 (222)
T ss_dssp STTTHHHHHHHHTT-------SCTTCEEEEEESCCCH--HHHTTGGG
T ss_pred HCCCHHHHHHHHHH-------CCCCCEEEEEEEECCH--HHHHHHHH
T ss_conf 25739999999996-------8988879999972888--99999999
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=6.6e-27 Score=203.79 Aligned_cols=179 Identities=23% Similarity=0.339 Sum_probs=145.0
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.|+++...++ .||.+|+++|+++++.++.++.|++++||||+|||++|.+++++..... .+++++|++|
T Consensus 10 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~---------~~~~~lil~p 80 (208)
T d1hv8a1 10 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTP 80 (208)
T ss_dssp SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCEEECCCCCCCCCC---------CCCCEEEEEE
T ss_conf 9899999999987999999999999999984999746441003444400203332111124---------6750699840
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH--HHCCCCEEEECHHHH-HHHHHHCCCCCCCCCEEEEEEECCCCC
Q ss_conf 48789999999987310389499999788863676--440364999272359-999831499864454008999253100
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~liIiDEvH~l 635 (1665)
+++||.|+.+.+.......+.++..++|+.....+ ...+++|+|+||+++ +.+.++. ..++.++++|+||+|.+
T Consensus 81 t~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~---~~~~~l~~lViDEad~l 157 (208)
T d1hv8a1 81 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---LNLKNVKYFILDEADEM 157 (208)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEETHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCC---CCCCCCCEEEEECHHHH
T ss_conf 333220334556665036770799852897869999860899999988699999997699---77666869999884876
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHH
Q ss_conf 16-880489999999999985116870099993337896-88999
Q 000324 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVAL 678 (1665)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~-~dva~ 678 (1665)
.+ +++..++.++. ..++.+|++++|||+|+. .++++
T Consensus 158 ~~~~~~~~i~~I~~-------~~~~~~Q~i~~SAT~~~~v~~~~~ 195 (208)
T d1hv8a1 158 LNMGFIKDVEKILN-------ACNKDKRILLFSATMPREILNLAK 195 (208)
T ss_dssp HTTTTHHHHHHHHH-------TSCSSCEEEEECSSCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHH-------HCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 10887177999998-------589988599997027989999999
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-26 Score=201.53 Aligned_cols=181 Identities=20% Similarity=0.291 Sum_probs=144.5
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.|++....++ .||..|+++|++++|.++.++ |++++||||||||++|++|+++.+... ..++++++++|
T Consensus 18 ~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~-dvl~~a~TGsGKTlayllp~l~~i~~~--------~~~~~alil~P 88 (218)
T d2g9na1 18 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAISILQQIELD--------LKATQALVLAP 88 (218)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSSHHHHHHHHHHHHCCTT--------CCSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHHEECCC--------CCCCCEEEECC
T ss_conf 979999999998899999999999999997699-889972562544554331022200036--------66751899824
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH----HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 487899999999873103894999997888636764----4036499927235999983149986445400899925310
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~ 634 (1665)
+++||.|+++.+.......+..+..+.|+....... ...++|+|+||+++..+.++.. ..+..++++|+||||.
T Consensus 89 t~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~--~~~~~l~~lVlDEaD~ 166 (218)
T d2g9na1 89 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY--LSPKYIKMFVLDEADE 166 (218)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTS--SCSTTCCEEEEESHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHCCC--CCCCCCEEEEEEECCH
T ss_conf 51123567777765124432168763024530677888764887799967815777886288--3246534898640210
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 016-88048999999999998511687009999333789688999970
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~ 681 (1665)
+.+ +++..++.++.. .+...|++++|||+++ ++..+.+
T Consensus 167 ll~~~f~~~~~~Il~~-------~~~~~Q~il~SAT~~~--~v~~~~~ 205 (218)
T d2g9na1 167 MLSRGFKDQIYDIFQK-------LNSNTQVVLLSATMPS--DVLEVTK 205 (218)
T ss_dssp HHHTTCHHHHHHHHHH-------SCTTCEEEEEESCCCH--HHHHHHH
T ss_pred HHCCCHHHHHHHHHHH-------CCCCCEEEEEEECCCH--HHHHHHH
T ss_conf 2127608999999996-------8999869999805998--9999999
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.8e-26 Score=198.39 Aligned_cols=186 Identities=23% Similarity=0.298 Sum_probs=154.7
Q ss_pred CCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 334468999863-9998999899999998739991999878997389999999999998504899809999855399999
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
.|+....+++.. ||.+|+|+|.+++|.++.|+| +++.||||||||++|++|++.++....+.. ++++++|+.+++.
T Consensus 7 ~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vi~~a~tGsGKTlay~lp~i~~~~~~~~~~--~~~~~~~~~~~~~ 83 (206)
T d1s2ma1 7 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKLNKI--QALIMVPTRELAL 83 (206)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSCHHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHCCCCCCCCCCCCCCC--CCEEECCCHHHHH
T ss_conf 9899999999987999999999999999986998-898658762144443033110023222344--3203235112113
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCH---HCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 99999999861788958999948872112---002799599988256899997200024678701898604531288886
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (1665)
Q Consensus 1405 q~~~~~~~~f~~~~~~~V~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g 1481 (1665)
+....+. .++...++++...+|+..... .+...++|+|+||+++..+++. ....+.+++++|+||||.+.+.+
T Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~lV~DEaD~l~~~~- 159 (206)
T d1s2ma1 84 QTSQVVR-TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD- 159 (206)
T ss_dssp HHHHHHH-HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH-
T ss_pred HHHHHHH-HCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC--CEEECCCCEEEEEECHHHHHHHH-
T ss_conf 3544333-2044467068852376301467777525654999897533333432--10101222077762213443002-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-HHHHHHHHCC
Q ss_conf 05999999999998623899709999544899-6899998636
Q 000324 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGA 1523 (1665)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~~ 1523 (1665)
+...+..|...+++..|++++|||++. ..+++.+...
T Consensus 160 -----f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~ 197 (206)
T d1s2ma1 160 -----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH 197 (206)
T ss_dssp -----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred -----HHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCC
T ss_conf -----47799999986898888999987388899999999889
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6e-26 Score=196.95 Aligned_cols=182 Identities=20% Similarity=0.298 Sum_probs=142.5
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.|++....++ .||..|+++|++++|.++.+. |++++||||||||++|++|+++.+.... .++.+++++|
T Consensus 9 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvl~~a~TGsGKTlayllP~l~~~~~~~--------~~~~~lil~p 79 (206)
T d1veca_ 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGR-DILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVP 79 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTC-CEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCHHHCCCCCC--------CCCCEEEEEE
T ss_conf 959999999998799999999999999998699-8874436740011212464132021025--------6752499840
Q ss_pred CHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHH---HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 4878999999998731038-94999997888636764---4036499927235999983149986445400899925310
Q 000324 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~ 634 (1665)
+++|+.|+++.+....+.. ++.+....|+....... ...++|+|+||+++..+.+... ..++.++++|+||||.
T Consensus 80 t~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~--~~~~~l~~lVlDEaD~ 157 (206)
T d1veca_ 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHH--CCCCCCCEEEEECCCC
T ss_conf 30166899999998751156764212367740888999887516708947963311233110--0015540699841420
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 016-880489999999999985116870099993337896889999700
Q 000324 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (1665)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~~ 682 (1665)
|.+ +++..++.++.. .+...|++++|||+|+ ++.++.+.
T Consensus 158 ll~~~f~~~i~~I~~~-------~~~~~Q~~l~SAT~~~--~v~~l~~~ 197 (206)
T d1veca_ 158 LLSQDFVQIMEDIILT-------LPKNRQILLYSATFPL--SVQKFMNS 197 (206)
T ss_dssp HTSTTTHHHHHHHHHH-------SCTTCEEEEEESCCCH--HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-------CCCCCEEEEEEECCCH--HHHHHHHH
T ss_conf 0112229999999986-------8998879999944998--99999999
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=1.7e-26 Score=200.84 Aligned_cols=184 Identities=32% Similarity=0.599 Sum_probs=153.7
Q ss_pred CCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
Q ss_conf 34468999863-99989998999999987399919998789973899999999999985048998099998553999999
Q 000324 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (1665)
Q Consensus 1327 L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q 1405 (1665)
+.+.....+.. ||..|+|+|.++++.+++++ |+++++|||||||.++.+++++.+.. .+ +++|++|+++|+.|
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~-~~il~apTGsGKT~~a~l~i~~~~~~---~~--~vl~l~P~~~L~~q 83 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGK-NLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGE 83 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCS-CEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHC---CC--CCEEECCCHHHHHH
T ss_conf 35999999998699999999999999998499-98998689985117899999987622---57--60331662789999
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC-CCHHH
Q ss_conf 99999998617889589999488721120027995999882568999972000246787018986045312888-86059
Q 000324 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVL 1484 (1665)
Q Consensus 1406 ~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~-~g~~~ 1484 (1665)
++..++ .+... ..++...+|+...........+++++||..+..+++.+ ...+.+++++|+||+|.+.++ ++..+
T Consensus 84 ~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~ii~DE~h~~~~~~r~~~~ 159 (202)
T d2p6ra3 84 KYESFK-KWEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATL 159 (202)
T ss_dssp HHHHHT-TTTTT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTT--CSGGGGCCEEEETTGGGGGCTTTHHHH
T ss_pred HHHHHH-HHHHC-CCCCEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHCC--CHHHHHHHHCCCCHHHHHCCCCCCHHH
T ss_conf 999999-98632-44310002674332212232212540108998887511--001103222246587775355431379
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999999999862389970999954489968999986366
Q 000324 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT 1524 (1665)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riI~lSATl~n~~dl~~wl~~~ 1524 (1665)
+.++++++.. .+++|+|+||||++|++++++|++..
T Consensus 160 ~~~l~~i~~~----~~~~~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 160 EILVTKMRRM----NKALRVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp HHHHHHHHHH----CTTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred HHHHHHHHHC----CCCCCEEEECCCCCCHHHHHHHCCCC
T ss_conf 9999999865----99983899817887599999870898
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4e-26 Score=198.23 Aligned_cols=186 Identities=22% Similarity=0.269 Sum_probs=149.4
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.|++....++ .||++|+++|.++++.++.+.+ ++++||||||||++|++|+++.+.... .++.+++++|
T Consensus 16 ~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a~~lp~i~~l~~~~--------~~~~~lil~p 86 (212)
T d1qdea_ 16 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 86 (212)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCC--------CCCCEEEECC
T ss_conf 9799999999987999999999999999986998-774456530100466766676650367--------7861489704
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH--HHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 48789999999987310389499999788863676--4403649992723599998314998644540089992531001
Q 000324 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~ 636 (1665)
+++|+.|....+.......++.+..+.|+.....+ ...+++|+|+||+++..+.+... ..+.+++++|+||||.+.
T Consensus 87 t~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~--~~l~~l~~lVlDEad~ll 164 (212)
T d1qdea_ 87 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR--FRTDKIKMFILDEADEML 164 (212)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCC--EECCCCEEEEEHHHHHHC
T ss_conf 488866666540012223321113675326616799984699199979975522234673--536864077530244531
Q ss_pred C-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHCCC
Q ss_conf 6-88048999999999998511687009999333789-688999970024
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n-~~dva~~l~~~~ 684 (1665)
+ +++..++.++.+ .++.+|++++|||+++ ...+++.+-.+|
T Consensus 165 d~~f~~~v~~I~~~-------~~~~~Q~vl~SAT~~~~v~~l~~~~l~~P 207 (212)
T d1qdea_ 165 SSGFKEQIYQIFTL-------LPPTTQVVLLSATMPNDVLEVTTKFMRNP 207 (212)
T ss_dssp HTTCHHHHHHHHHH-------SCTTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHHH-------CCCCCEEEEEEEECCHHHHHHHHHHCCCC
T ss_conf 44439999999985-------89888699998618989999999878999
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.6e-25 Score=193.88 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=139.2
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.|++....++ .||+.|+++|++++|.++.+. |++++||||||||++|.+|+++.+.... .++++++++|
T Consensus 7 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvl~~A~TGsGKTla~~lp~l~~~~~~~--------~~~~~lil~P 77 (207)
T d1t6na_ 7 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCH 77 (207)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCEEEEECCCC--------CCCEEEEEEC
T ss_conf 849999999998799999999999999998499-8577722333212001344032102467--------7862899851
Q ss_pred CHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHH----HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 4878999999998731038-94999997888636764----403649992723599998314998644540089992531
Q 000324 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~-gi~V~~ltGd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH 633 (1665)
+++|+.|+.+.+....... .+++..++|+.....+. ...++|+|+||+++..+.++.. ..++.++++|+||||
T Consensus 78 treL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~--~~l~~l~~lVlDEaD 155 (207)
T d1t6na_ 78 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECD 155 (207)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHCCCCC--EECCCCCEEEHHHHH
T ss_conf 220367899999999843887516788456548899999873689989908546432025882--554303034023444
Q ss_pred CCCCC--CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHH
Q ss_conf 00168--8048999999999998511687009999333789-68899997
Q 000324 634 LLHDN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFL 680 (1665)
Q Consensus 634 ~l~d~--rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n-~~dva~~l 680 (1665)
.+.+. +...++.++ ...+...|++++|||+++ .+++++.+
T Consensus 156 ~ll~~~~~~~~i~~I~-------~~~~~~~Q~il~SAT~~~~v~~l~~~~ 198 (207)
T d1t6na_ 156 KMLEQLDMRRDVQEIF-------RMTPHEKQVMMFSATLSKEIRPVCRKF 198 (207)
T ss_dssp HHHSSHHHHHHHHHHH-------HTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred HHHHCCCCHHHHHHHH-------HHCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 4541378599999999-------748898879999400888999999998
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.93 E-value=1.4e-24 Score=187.28 Aligned_cols=186 Identities=20% Similarity=0.249 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 334468999863-9998999899999998739991999878997389999999999998504899809999855399999
Q 000324 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1326 ~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
.|.....+++.. ||.+|+|+|.++++.+++|+| ++++||||||||++|.+|+++.+....... ..++++|+.+++.
T Consensus 7 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vii~a~TGSGKTlayllp~l~~~~~~~~~~--~~~~~~~~~~~~~ 83 (209)
T d1q0ua_ 7 PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGES-MVGQSQTGTGKTHAYLLPIMEKIKPERAEV--QAVITAPTRELAT 83 (209)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCSSHHHHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCCCEEEEEEECCCCCCCCCCC--CCCCCCCCCCHHH
T ss_conf 9599999999987999999999999999987997-686624442133144431001245444444--4222233332147
Q ss_pred HHHHHHHHHHCCC---CCCEEEEEECCCCCCHH---CCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 9999999986178---89589999488721120---02799599988256899997200024678701898604531288
Q 000324 1405 ERYRDWEIKFGQG---LGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1405 q~~~~~~~~f~~~---~~~~V~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~ 1478 (1665)
+.+.......... ....+..+.|+...... ...+++|+|+||+++..+.++ ....+.+++++|+||||.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~--~~~~~~~l~~lViDEad~ll~ 161 (209)
T d1q0ua_ 84 QIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLD 161 (209)
T ss_dssp HHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHH--HCCCCCCCEEEEEEECCCCCC
T ss_conf 788888764122333432110002562036778887466754998347101223321--013445533899960230113
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-HHHHHHHHC
Q ss_conf 88605999999999998623899709999544899-689999863
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (1665)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n-~~dl~~wl~ 1522 (1665)
.+ +...+..+...++++.|++++|||+++ ..++++.+.
T Consensus 162 ~~------f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l 200 (209)
T d1q0ua_ 162 MG------FITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYM 200 (209)
T ss_dssp TT------CHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHC
T ss_pred CC------CHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 14------0999999999789988799997219989999999978
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.4e-24 Score=182.59 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=144.2
Q ss_pred CCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 993358521--899999999999999988389909998248986099999999999984289999998997099999354
Q 000324 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (1665)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~ 559 (1665)
|++.+..++ .||.+|+++|++++|.++.+.+ +++.||||||||++|++|+++.+.... .+.++++++|+
T Consensus 8 L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vi~~a~tGsGKTlay~lp~i~~~~~~~--------~~~~~~~~~~~ 78 (206)
T d1s2ma1 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPT 78 (206)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHCCCCCCCCCCCC--------CCCCCEEECCC
T ss_conf 899999999987999999999999999986998-898658762144443033110023222--------34432032351
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH---HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 87899999999873103894999997888636764---403649992723599998314998644540089992531001
Q 000324 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~ 636 (1665)
+.++.+....+.......++++...+|+.....+. ...++|+|+||+++..+.+... ..+.+++++|+||||.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~lV~DEaD~l~ 156 (206)
T d1s2ma1 79 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV--ADLSDCSLFIMDEADKML 156 (206)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCE--EECCCCEEEEEECHHHHH
T ss_conf 121133544333204446706885237630146777752565499989753333343210--101222077762213443
Q ss_pred C-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHH
Q ss_conf 6-88048999999999998511687009999333789-68899997
Q 000324 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFL 680 (1665)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n-~~dva~~l 680 (1665)
+ ++++.++.++.+ .+..+|++++|||+|. ..+++.+.
T Consensus 157 ~~~f~~~v~~I~~~-------l~~~~Q~il~SATl~~~v~~~~~~~ 195 (206)
T d1s2ma1 157 SRDFKTIIEQILSF-------LPPTHQSLLFSATFPLTVKEFMVKH 195 (206)
T ss_dssp SHHHHHHHHHHHTT-------SCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------CCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 00247799999986-------8988889999873888999999998
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.91 E-value=2.2e-23 Score=178.82 Aligned_cols=180 Identities=20% Similarity=0.317 Sum_probs=138.4
Q ss_pred CCCHHHHHHC--CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 9993358521--89999999999999998838990999824898609999999999998428999999899709999935
Q 000324 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (1665)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP 558 (1665)
.|+++..... .||+.|+++|+++++.++++. |++++||||||||++|++|+++.+.... .....++++|
T Consensus 7 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvii~a~TGSGKTlayllp~l~~~~~~~--------~~~~~~~~~~ 77 (209)
T d1q0ua_ 7 PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGE-SMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAP 77 (209)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCCCCCEEEEEEECCCCCCCC--------CCCCCCCCCC
T ss_conf 959999999998799999999999999998799-7686624442133144431001245444--------4444222233
Q ss_pred CHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCCCHH---HHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEC
Q ss_conf 4878999999998731038----9499999788863676---44036499927235999983149986445400899925
Q 000324 559 MKALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (1665)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~----gi~V~~ltGd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDE 631 (1665)
.+.++.+.+..+....... ...+..+.|+.....+ ...+++|+|+||+++..+.++.. ..+.+++++|+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~--~~~~~l~~lViDE 155 (209)
T d1q0ua_ 78 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDE 155 (209)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC--CCCCCCEEEEEEE
T ss_conf 33214778888876412233343211000256203677888746675499834710122332101--3445533899960
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHH
Q ss_conf 310016-88048999999999998511687009999333789-688999
Q 000324 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVAL 678 (1665)
Q Consensus 632 vH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~n-~~dva~ 678 (1665)
+|.+.+ +++..++.++.. .++++|++++|||+|+ ..++++
T Consensus 156 ad~ll~~~f~~~v~~I~~~-------~~~~~Q~il~SATl~~~v~~l~~ 197 (209)
T d1q0ua_ 156 ADLMLDMGFITDVDQIAAR-------MPKDLQMLVFSATIPEKLKPFLK 197 (209)
T ss_dssp HHHHHHTTCHHHHHHHHHT-------SCTTCEEEEEESCCCGGGHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH-------CCCCCEEEEEECCCCHHHHHHHH
T ss_conf 2301131409999999997-------89988799997219989999999
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.89 E-value=3.2e-21 Score=163.46 Aligned_cols=183 Identities=21% Similarity=0.258 Sum_probs=123.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 99999999999999883899099982489860999999999999842899999989970999993548789999999987
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~ 572 (1665)
+-+|+++|.+++..+.. .|+|++||||+|||+++.+++...+... +.+++|++|+++|+.|++++|.+
T Consensus 7 ~~~pr~~Q~~~~~~~~~--~n~lv~~pTGsGKT~i~~~~~~~~~~~~----------~~~il~i~P~~~L~~q~~~~~~~ 74 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRR 74 (200)
T ss_dssp HHCCCHHHHHHHHHGGG--SCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHHC----------CCCEEEECCCHHHHHHHHHHHHH
T ss_conf 78988999999999963--9969991899728899999999999706----------98189973705777788999998
Q ss_pred HHCCCCCEEEEEECCCCCCHH--HHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 310389499999788863676--440364999272359999831499864454008999253100168804899999999
Q 000324 573 RLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (1665)
Q Consensus 573 ~~~~~gi~V~~ltGd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~ 650 (1665)
.+...+.++...+++...... .....+++++||+.+........ ..++.++++|+||+|.+.+..+. ..+....
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~vIiDE~H~~~~~~~~--~~~~~~~ 150 (200)
T d1wp9a1 75 LFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR--ISLEDVSLIVFDEAHRAVGNYAY--VFIAREY 150 (200)
T ss_dssp HBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTS--CCTTSCSEEEEETGGGCSTTCHH--HHHHHHH
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--HHCCCCCEEEEEEHHHHHCCHHH--HHHHHHH
T ss_conf 6335542013420366456777765114222343202577876313--31156661899862113122168--9999999
Q ss_pred HHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 9998511687009999333789-688999970024685698349975
Q 000324 651 VRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR 696 (1665)
Q Consensus 651 ~~~~~~~~~~~riv~lSATl~n-~~dva~~l~~~~~~~~~~f~~~~r 696 (1665)
.......+++++|||+++ ..++..++.. +......+.....
T Consensus 151 ----~~~~~~~~~l~~SATp~~~~~~~~~~~~~-l~~~~i~~~~~~~ 192 (200)
T d1wp9a1 151 ----KRQAKNPLVIGLTASPGSTPEKIMEVINN-LGIEHIEYRSENS 192 (200)
T ss_dssp ----HHHCSSCCEEEEESCSCSSHHHHHHHHHH-TTCCEEEECCTTS
T ss_pred ----HHCCCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf ----86589985799996179739999999846-9954999689998
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.3e-22 Score=173.25 Aligned_cols=67 Identities=28% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999999988389909998248986099999999999984289999998997099999354878999999998
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
||..|+++|.++++.++.+ +|++++||||||||.+|.++++.. ..+++|++|+++|+.|+.+.+.
T Consensus 22 g~~~~rp~Q~~ai~~~l~g-~~vlv~apTGsGKT~~~~~~~~~~--------------~~~~~~v~P~~~L~~q~~~~l~ 86 (206)
T d1oywa2 22 GYQQFRPGQEEIIDTVLSG-RDCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSPLISLMKDQVDQLQ 86 (206)
T ss_dssp CCSSCCTTHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCCCCHHHHHHHHC--------------CCCEEEECCCHHHHHHHHHHHH
T ss_conf 9999998999999999869-988998678899752312025542--------------6724786264066666899997
Q ss_pred HH
Q ss_conf 73
Q 000324 572 NR 573 (1665)
Q Consensus 572 ~~ 573 (1665)
..
T Consensus 87 ~~ 88 (206)
T d1oywa2 87 AN 88 (206)
T ss_dssp HT
T ss_pred HH
T ss_conf 63
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.88 E-value=3.9e-22 Score=169.91 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=142.7
Q ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCH
Q ss_conf 73999199987899738999999999999850489980999985539999999999999861788958999948872112
Q 000324 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (1665)
Q Consensus 1354 ~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~ 1433 (1665)
+..++++++.||||||||++|+.+++...... +. +++|++|+++|+.|+++.++ .++.. ....... .
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~~--~~lvi~Ptr~La~q~~~~l~-~~~~~--~~~~~~~------~ 72 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--GL--RTLILAPTRVVAAEMEEALR-GLPIR--YQTPAIR------A 72 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--TC--CEEEEESSHHHHHHHHHHTT-TSCCB--CCC-----------
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC--CC--EEEEECCHHHHHHHHHHHHH-CCCCC--EEEEEEE------E
T ss_conf 64699499997999978799999999998726--99--89998238999999999985-48752--1113785------0
Q ss_pred HCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 00279959998825689999720002467870189860453128888605999999999998623899709999544899
Q 000324 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.......++++||+.+..... ....+.+++++|+||+|++..++. ....++... . .....+++++|||.+.
T Consensus 73 ~~~~~~~i~~~t~~~l~~~~~---~~~~~~~~~~vViDE~H~~~~~~~-~~~~~l~~~---~--~~~~~~~v~~SAT~~~ 143 (305)
T d2bmfa2 73 EHTGREIVDLMCHATFTMRLL---SPIRVPNYNLIIMDEAHFTDPASI-AARGYISTR---V--EMGEAAGIFMTATPPG 143 (305)
T ss_dssp ---CCCSEEEEEHHHHHHHHT---SSSCCCCCSEEEEESTTCCSHHHH-HHHHHHHHH---H--HHTSCEEEEECSSCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHH---CCCCCCCEEEEEEEEEEECCHHHH-HHHHHHHHH---H--CCCCCEEEEEECCCCC
T ss_conf 125765301377489999984---585315400898530111252057-888999984---1--6653138994157876
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 68999986366892783599987635299984022231357887219269999998734999799995862789999999
Q 000324 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (1665)
Q Consensus 1514 ~~dl~~wl~~~~~~~~~f~~~~rp~~l~i~i~~~~~~~~~~~~~~~~k~~~~~i~~~l~~~~~~IIFv~sr~~a~~la~~ 1593 (1665)
... .+.. +..+............. ..... ......++++|||+++++|+.++..
T Consensus 144 ~~~-------------~~~~--~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~lvf~~~~~~~~~l~~~ 197 (305)
T d2bmfa2 144 SRD-------------PFPQ--SNAPIMDEEREIPERSW--------NSGHE---WVTDFKGKTVWFVPSIKAGNDIAAC 197 (305)
T ss_dssp CCC-------------SSCC--CSSCEEEEECCCCCSCC--------SSCCH---HHHSSCSCEEEECSCHHHHHHHHHH
T ss_pred CEE-------------EECC--CCCCCEEEEEECCHHHH--------HHHHH---HHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 433-------------4023--47861279986158889--------99999---9996079989996309999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 987013588732112469933203557554499999874245899858999999999999995399608989
Q 000324 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|. ..+..+..+|+++.+..| ..|++|..+++||
T Consensus 198 L~-----------------------------------~~~~~~~~l~~~~~~~~~----~~~~~~~~~~lva 230 (305)
T d2bmfa2 198 LR-----------------------------------KNGKKVIQLSRKTFDSEY----IKTRTNDWDFVVT 230 (305)
T ss_dssp HH-----------------------------------HHTCCCEECCTTCHHHHG----GGGGTSCCSEEEE
T ss_pred HH-----------------------------------HCCCCEEEECCCCHHHHH----HHHHCCCHHHHHH
T ss_conf 98-----------------------------------679989995783847777----5431000113555
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.5e-22 Score=172.85 Aligned_cols=187 Identities=20% Similarity=0.324 Sum_probs=130.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 87788999852233446899986399989998999999987399919998789973899999999999985048998099
Q 000324 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRA 1393 (1665)
Q Consensus 1314 t~ll~l~p~~~~~L~~~~~~~l~~~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~ra 1393 (1665)
.++++|.+... ..++..| ||..|+|+|.++++.++.++ |++++||||||||+||.+|++. ..+ ++
T Consensus 4 ~e~~~l~~~~~-----~~l~~~f-g~~~~rp~Q~~ai~~~l~g~-~vlv~apTGsGKT~~~~~~~~~------~~~--~~ 68 (206)
T d1oywa2 4 AEVLNLESGAK-----QVLQETF-GYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALL------LNG--LT 68 (206)
T ss_dssp CCCSSHHHHHH-----HHHHHTT-CCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHH------SSS--EE
T ss_pred HHHCCCCHHHH-----HHHHHHC-CCCCCCHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHHH------CCC--CE
T ss_conf 34479978999-----9999963-99999989999999998699-8899867889975231202554------267--24
Q ss_pred EEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC-------HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 998553999999999999986178895899994887211-------2002799599988256899997200024678701
Q 000324 1394 VYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (1665)
Q Consensus 1394 ivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~-------~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~ 1466 (1665)
+|++|+++|+.|....++ .++. ......+..... .......+|+++||+++...... .......+.
T Consensus 69 ~~v~P~~~L~~q~~~~l~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~--~~~~~~~v~ 141 (206)
T d1oywa2 69 VVVSPLISLMKDQVDQLQ-ANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL--EHLAHWNPV 141 (206)
T ss_dssp EEECSCHHHHHHHHHHHH-HTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH--HHHTTSCEE
T ss_pred EEECCCHHHHHHHHHHHH-HHCC----CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECHHHHCHHHC--CCCHHHEEE
T ss_conf 786264066666899997-6356----653221111245205677887628846999703011000102--422100222
Q ss_pred EEEEECCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH--HHHHHHHCCCC
Q ss_conf 89860453128888-6059999999999986238997099995448996--89999863668
Q 000324 1467 LFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATS 1525 (1665)
Q Consensus 1467 liIiDEaH~l~~~~-g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~--~dl~~wl~~~~ 1525 (1665)
++|+||+|++.+++ +...+ ...+..+.... .++|+++||||+++. +|+.+|++...
T Consensus 142 ~lviDEaH~~~~~~~~~~~~--~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~ 200 (206)
T d1oywa2 142 LLAVDEAHCISQWGHDFRPE--YAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLND 200 (206)
T ss_dssp EEEESSGGGGCTTSSCCCHH--HHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCS
T ss_pred EEEEEEEEEEECCCCCHHHH--HHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 43000125650226650899--99999999758-9983599994899799999999769999
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.88 E-value=8.4e-21 Score=160.46 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=131.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99899989999999873999199987899738999999999999850489980999985539999999999999861788
Q 000324 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1339 f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~ 1418 (1665)
+-.|+++|.+++..+.. .|+++++|||||||+++.+++...+.. .++ +++|++|+++|+.|+++.+++.| ...
T Consensus 7 ~~~pr~~Q~~~~~~~~~--~n~lv~~pTGsGKT~i~~~~~~~~~~~--~~~--~il~i~P~~~L~~q~~~~~~~~~-~~~ 79 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLF-NLP 79 (200)
T ss_dssp HHCCCHHHHHHHHHGGG--SCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHB-CSC
T ss_pred CCCCCHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHH--CCC--CEEEECCCHHHHHHHHHHHHHHH-CCC
T ss_conf 78988999999999963--996999189972889999999999970--698--18997370577778899999863-355
Q ss_pred CCEEEEEECCCCCCH--HCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 958999948872112--002799599988256899997200024678701898604531288886059999999999986
Q 000324 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (1665)
Q Consensus 1419 ~~~V~~ltG~~~~~~--~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (1665)
+.++....++..... +.+...+++++||+.+...... ....+.+++++|+||+|++....+ +....... .
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~vIiDE~H~~~~~~~--~~~~~~~~----~ 151 (200)
T d1wp9a1 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNYA--YVFIAREY----K 151 (200)
T ss_dssp GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTCH--HHHHHHHH----H
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH--HHHHCCCCCEEEEEEHHHHHCCHH--HHHHHHHH----H
T ss_conf 420134203664567777651142223432025778763--133115666189986211312216--89999999----8
Q ss_pred HCCCCCEEEEECCCCCC-HHHHHHHHCCCCCCEEECCC
Q ss_conf 23899709999544899-68999986366892783599
Q 000324 1497 QVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPP 1533 (1665)
Q Consensus 1497 ~~~~~~riI~lSATl~n-~~dl~~wl~~~~~~~~~f~~ 1533 (1665)
......+++++|||+.+ ..++.++++........+..
T Consensus 152 ~~~~~~~~l~~SATp~~~~~~~~~~~~~l~~~~i~~~~ 189 (200)
T d1wp9a1 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189 (200)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECC
T ss_pred HCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf 65899857999961797399999998469954999689
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=2.3e-22 Score=171.61 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=110.0
Q ss_pred HHHHC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 58521-89999999999999998838990999824898609999999999998428999999899709999935487899
Q 000324 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~ 564 (1665)
+...| .++..|+++|.++++.++.+ ++++++||||+|||.+++++++..... +.+++|++|+++|+.
T Consensus 33 ~~~~~~~~~~~p~~~Q~~~i~~~l~g-~~~~i~apTGsGKT~~~~~~~~~~~~~-----------~~rvliv~Pt~~La~ 100 (237)
T d1gkub1 33 FVEFFRKCVGEPRAIQKMWAKRILRK-ESFAATAPTGVGKTSFGLAMSLFLALK-----------GKRCYVIFPTSLLVI 100 (237)
T ss_dssp HHHHHHTTTCSCCHHHHHHHHHHHTT-CCEECCCCBTSCSHHHHHHHHHHHHTT-----------SCCEEEEESCHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHHHHH-----------CCEEEEEECCHHHHH
T ss_conf 99999866599989999999999779-977999268976999999999999874-----------583899944499999
Q ss_pred HHHHHHHHHHCCCCCEE----EEEECCCCCCHH-----HHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99999987310389499----999788863676-----440364999272359999831499864454008999253100
Q 000324 565 EVVGNLSNRLQMYDVKV----RELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 565 q~~~~~~~~~~~~gi~V----~~ltGd~~~~~~-----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l 635 (1665)
|+++++.+++..+++.+ ....++.....+ ....++|+|+||+.+ .+.. ..++.+++||+||+|.+
T Consensus 101 Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l---~~~~---~~~~~~~~vVvDE~d~~ 174 (237)
T d1gkub1 101 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFL---SKHY---RELGHFDFIFVDDVDAI 174 (237)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH---HHCS---TTSCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCEECCCHHHH---HHHH---HHCCCCCEEEEECHHHH
T ss_conf 99999999999849946999855422541235655540344442322686999---9754---43477888999992666
Q ss_pred CCCCCHHHHHHHHHH------HHHHHHCCCCEEEEEECCCCCCH
Q ss_conf 168804899999999------99985116870099993337896
Q 000324 636 HDNRGPVLESIVART------VRQIETTKEHIRLVGLSATLPNY 673 (1665)
Q Consensus 636 ~d~rg~~le~iv~r~------~~~~~~~~~~~riv~lSATl~n~ 673 (1665)
.+. +..+..+...+ ...........+++++|||+++.
T Consensus 175 l~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 175 LKA-SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp HTS-THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCC
T ss_pred HHC-CCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 433-4214578886187399999986278888599990789945
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=1.8e-22 Score=172.37 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=127.3
Q ss_pred CCCCCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 998522334468999863-9998999899999998739991999878997389999999999998504899809999855
Q 000324 1320 QPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (1665)
Q Consensus 1320 ~p~~~~~L~~~~~~~l~~-~f~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~P 1398 (1665)
..+|...+. ..++.++. ++..|+++|.++++.++.|++ ++++||||+|||+++.++++..... +. +++||+|
T Consensus 22 ~~~~~~~~~-~~~~~~~~~~~~~p~~~Q~~~i~~~l~g~~-~~i~apTGsGKT~~~~~~~~~~~~~---~~--rvliv~P 94 (237)
T d1gkub1 22 CLFPEDFLL-KEFVEFFRKCVGEPRAIQKMWAKRILRKES-FAATAPTGVGKTSFGLAMSLFLALK---GK--RCYVIFP 94 (237)
T ss_dssp SCCTTHHHH-HHHHHHHHTTTCSCCHHHHHHHHHHHTTCC-EECCCCBTSCSHHHHHHHHHHHHTT---SC--CEEEEES
T ss_pred CCCCCCHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHHHHHH---CC--EEEEEEC
T ss_conf 659640148-999999986659998999999999977997-7999268976999999999999874---58--3899944
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCE----EEEEECCCCCC-----HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 39999999999999861788958----99994887211-----2002799599988256899997200024678701898
Q 000324 1399 LEALAKERYRDWEIKFGQGLGMR----VVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (1665)
Q Consensus 1399 t~eLa~q~~~~~~~~f~~~~~~~----V~~ltG~~~~~-----~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liI 1469 (1665)
+++|+.|+++++++ +....++. +....++.... .+....++|+|+||+++.. ....+.+++++|
T Consensus 95 t~~La~Q~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~------~~~~~~~~~~vV 167 (237)
T d1gkub1 95 TSLLVIQAAETIRK-YAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK------HYRELGHFDFIF 167 (237)
T ss_dssp CHHHHHHHHHHHHH-HHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH------CSTTSCCCSEEE
T ss_pred CHHHHHHHHHHHHH-HHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCEECCCHHHHHH------HHHHCCCCCEEE
T ss_conf 49999999999999-99984994699985542254123565554034444232268699997------544347788899
Q ss_pred EECCCCCCCCCCHHHHHHHHHH------HHHHHHCCCCCEEEEECCCCCCH---HHHHHHHC
Q ss_conf 6045312888860599999999------99986238997099995448996---89999863
Q 000324 1470 IDELHLIGGQGGPVLEVIVSRM------RYIASQVENKIRIVALSTSLANA---KDLGEWIG 1522 (1665)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~isrl------~~i~~~~~~~~riI~lSATl~n~---~dl~~wl~ 1522 (1665)
+||+|.+.+.. ..+......+ ..+....+...+++++|||+++. .-+.++++
T Consensus 168 vDE~d~~l~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 168 VDDVDAILKAS-KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp ESCHHHHHTST-HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred EECHHHHHHCC-CCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHC
T ss_conf 99926664334-21457888618739999998627888859999078994539999999748
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6.3e-20 Score=154.23 Aligned_cols=125 Identities=20% Similarity=0.344 Sum_probs=111.0
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHH
Q ss_conf 98389829999658267999999999974101322445556801399998521013641034210785799368999788
Q 000324 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (1665)
Q Consensus 729 ~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~d 808 (1665)
....+.++||||+|++.+..++..|...+ +.+..+||+|+..+
T Consensus 26 ~~~~~~~~IIF~~t~~~~~~l~~~l~~~~-------------------------------------~~~~~~h~~~~~~~ 68 (200)
T d1oywa3 26 QEQRGKSGIIYCNSRAKVEDTAARLQSKG-------------------------------------ISAAAYHAGLENNV 68 (200)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HHCCCCCEEEEEEEEHHHHHHHHHHCCCC-------------------------------------CEEEEECCCCCHHH
T ss_conf 85699988999822311677644324478-------------------------------------53577538871777
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECC
Q ss_conf 99999997099977687430000245898628999635013799997543899889843123689999982289999088
Q 000324 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
|..+++.|++|.++|||||+++++|||+|++++||+ |++|. ++.+|+||+|||||.| ..|.+++++++
T Consensus 69 r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~----~~~P~------~~~~y~qr~GR~gR~g--~~g~ai~~~~~ 136 (200)
T d1oywa3 69 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQETGRAGRDG--LPAEAMLFYDP 136 (200)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHHHHHTTSCTTS--SCEEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCEEEE----CCCCC------CHHHHHHHHHHHHCCC--CCCEEEEECCH
T ss_conf 899998874134307874023453168878889998----77751------1688988754531377--77258775178
Q ss_pred CCHHHHHHHHCCCC
Q ss_conf 73899998420887
Q 000324 889 SELRYYLSLMNQQL 902 (1665)
Q Consensus 889 ~~~~~y~~ll~~~~ 902 (1665)
.+..+..+++.+..
T Consensus 137 ~d~~~l~~~i~~~~ 150 (200)
T d1oywa3 137 ADMAWLRRCLEEKP 150 (200)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 89888876343034
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.5e-19 Score=151.52 Aligned_cols=140 Identities=19% Similarity=0.375 Sum_probs=115.2
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 28998520376357889877999999999838982999965826799999999997410132244555680139999852
Q 000324 701 SQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780 (1665)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~ 780 (1665)
.|.|+.+... ..++..+..+ .+.....++||||+++..++.++..|...+.
T Consensus 2 ~q~~~~v~~~--e~K~~~L~~l-----l~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~---------------------- 52 (162)
T d1fuka_ 2 KQFYVNVEEE--EYKYECLTDL-----YDSISVTQAVIFCNTRRKVEELTTKLRNDKF---------------------- 52 (162)
T ss_dssp EEEEEEEESG--GGHHHHHHHH-----HHHTTCSCEEEEESSHHHHHHHHHHHHHTTC----------------------
T ss_pred EEEEEEECCC--HHHHHHHHHH-----HHHCCCCCEEEEEEEECHHHHHHHHHHHCCC----------------------
T ss_conf 8999995883--7899999999-----9848988589999887069999988865495----------------------
Q ss_pred HHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 10136410342107857993689997889999999709997768743000024589862899963501379999754389
Q 000324 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELS 860 (1665)
Q Consensus 781 ~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls 860 (1665)
.+..+||+|++.+|..+++.|+.|..+|||||+++++|+|+|++++||+ ||+|. +
T Consensus 53 ---------------~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~----~d~P~------~ 107 (162)
T d1fuka_ 53 ---------------TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------N 107 (162)
T ss_dssp ---------------CEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------S
T ss_pred ---------------EEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEE----ECCCH------H
T ss_conf ---------------5999516775236778999876403645651562344655777508999----34514------6
Q ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf 988984312368999998228999908873899998
Q 000324 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
+..|+||+||+||.| ..|.++.++++.+......
T Consensus 108 ~~~yihR~GR~gR~g--~~g~~i~~~~~~d~~~~~~ 141 (162)
T d1fuka_ 108 KENYIHRIGRGGRFG--RKGVAINFVTNEDVGAMRE 141 (162)
T ss_dssp GGGGGGSSCSCC-------CEEEEEEETTTHHHHHH
T ss_pred HHHHHHHCCCCCCCC--CCCEEEEECCHHHHHHHHH
T ss_conf 778876501445479--8647999817999999999
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=5.1e-19 Score=147.81 Aligned_cols=143 Identities=24% Similarity=0.385 Sum_probs=117.9
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 23228998520376357889877999999999838982999965826799999999997410132244555680139999
Q 000324 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (1665)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l 777 (1665)
..+.+.|+.+... .+...+.++ ++.....++||||++++.+..++..|...+
T Consensus 5 ~~i~q~yi~v~~~---~K~~~L~~l-----l~~~~~~k~iVF~~~~~~~~~l~~~L~~~g-------------------- 56 (171)
T d1s2ma2 5 KGITQYYAFVEER---QKLHCLNTL-----FSKLQINQAIIFCNSTNRVELLAKKITDLG-------------------- 56 (171)
T ss_dssp TTEEEEEEECCGG---GHHHHHHHH-----HHHSCCSEEEEECSSHHHHHHHHHHHHHHT--------------------
T ss_pred CCEEEEEEECCHH---HHHHHHHHH-----HHHCCCCCEEEEEEEEEHHHHHHHHHHCCC--------------------
T ss_conf 0649999994889---999999999-----984898765999722413567677650133--------------------
Q ss_pred HHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 85210136410342107857993689997889999999709997768743000024589862899963501379999754
Q 000324 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (1665)
Q Consensus 778 ~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~ 857 (1665)
+.+..+||+|+..+|..+++.|++|..++||||+++++|+|+|.+.+||+ ||+|.
T Consensus 57 -----------------~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~----~d~p~---- 111 (171)
T d1s2ma2 57 -----------------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK---- 111 (171)
T ss_dssp -----------------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS----
T ss_pred -----------------CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEEEE----CCCCC----
T ss_conf -----------------44333433321145665532113686311012017654104662489996----48760----
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 3899889843123689999982289999088738999984
Q 000324 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (1665)
Q Consensus 858 ~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (1665)
++..|+||+||+||.| ..|.++.+++..+...+..+
T Consensus 112 --~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e~~~~~~i 147 (171)
T d1s2ma2 112 --TAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYKI 147 (171)
T ss_dssp --SHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHHH
T ss_pred --HHHHHHHHHHHCCCCC--CCCEEEEEECHHHHHHHHHH
T ss_conf --2777877755314179--96179998578999999999
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.1e-19 Score=148.45 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=116.7
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 23228998520376357889877999999999838982999965826799999999997410132244555680139999
Q 000324 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (1665)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l 777 (1665)
..+.|.|+.+... ..++..+..+ +......++||||+++..+..++..|...+.
T Consensus 6 ~~i~q~~v~v~~~--~~K~~~L~~l-----l~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~------------------- 59 (168)
T d2j0sa2 6 EGIKQFFVAVERE--EWKFDTLCDL-----YDTLTITQAVIFCNTKRKVDWLTEKMREANF------------------- 59 (168)
T ss_dssp TTEEEEEEEESST--THHHHHHHHH-----HHHHTSSEEEEECSSHHHHHHHHHHHHHTTC-------------------
T ss_pred CCCEEEEEEECCH--HHHHHHHHHH-----HHHCCCCCEEEEEEEHHHHHHHHHHHHHCCC-------------------
T ss_conf 8838999996686--9999999999-----9847877639996058887888877663044-------------------
Q ss_pred HHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 85210136410342107857993689997889999999709997768743000024589862899963501379999754
Q 000324 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (1665)
Q Consensus 778 ~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~ 857 (1665)
.+..+||+++..+|..+++.|++|.+++||||+++++|+|+|.+++||+ ||+|.
T Consensus 60 ------------------~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn----~d~P~---- 113 (168)
T d2j0sa2 60 ------------------TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN---- 113 (168)
T ss_dssp ------------------CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS----
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHCCCCCCCCCCEEEE----ECCCC----
T ss_conf ------------------3133311225789999999986388407741441005655357656899----33776----
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf 389988984312368999998228999908873899998
Q 000324 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (1665)
Q Consensus 858 ~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (1665)
+...|+||+||+||.| ..|.++.++++.+...+..
T Consensus 114 --~~~~yihR~GR~gR~g--~~G~~i~~~~~~d~~~~~~ 148 (168)
T d2j0sa2 114 --NRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILRD 148 (168)
T ss_dssp --SHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHHH
T ss_pred --CHHHHHHHHCCCCCCC--CCCEEEEEECHHHHHHHHH
T ss_conf --7878876610445269--9747999977899999999
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=1.2e-18 Score=145.12 Aligned_cols=139 Identities=22% Similarity=0.460 Sum_probs=114.1
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 32289985203763578898779999999998389829999658267999999999974101322445556801399998
Q 000324 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQ 778 (1665)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~ 778 (1665)
.+.+.|+.+... .++..+..++ .. .+.++||||++++.+..++..|...+
T Consensus 3 nI~~~~i~v~~~---~K~~~L~~ll-----~~-~~~k~IIF~~s~~~~~~l~~~L~~~g--------------------- 52 (155)
T d1hv8a2 3 NIEQSYVEVNEN---ERFEALCRLL-----KN-KEFYGLVFCKTKRDTKELASMLRDIG--------------------- 52 (155)
T ss_dssp SSEEEEEECCGG---GHHHHHHHHH-----CS-TTCCEEEECSSHHHHHHHHHHHHHTT---------------------
T ss_pred CEEEEEEEECHH---HHHHHHHHHH-----CC-CCCCEEEEECCHHHHHHHHHHHCCCC---------------------
T ss_conf 808999995739---9999999997-----26-99989999794489988876523343---------------------
Q ss_pred HHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 52101364103421078579936899978899999997099977687430000245898628999635013799997543
Q 000324 779 SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858 (1665)
Q Consensus 779 ~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ 858 (1665)
..+..+|++++..+|..+++.|++|..+|||||+++++|+|+|.+.+||+ |++|.
T Consensus 53 ----------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~----~d~p~----- 107 (155)
T d1hv8a2 53 ----------------FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ----- 107 (155)
T ss_dssp ----------------CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS-----
T ss_pred ----------------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCEEEE----ECCCC-----
T ss_conf ----------------22223333100113456665541211125530367765432212767999----64999-----
Q ss_pred CCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 8998898431236899999822899990887389999
Q 000324 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (1665)
Q Consensus 859 ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (1665)
++.+|+||+||+||.| ..|.++.+++..+...+.
T Consensus 108 -~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~~~~ 141 (155)
T d1hv8a2 108 -NPESYMHRIGRTGRAG--KKGKAISIINRREYKKLR 141 (155)
T ss_dssp -CHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHH
T ss_pred -CHHHHHHHHHHCCCCC--CCCEEEEEECHHHHHHHH
T ss_conf -9999998877637479--973699998668999999
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.6e-19 Score=146.19 Aligned_cols=138 Identities=21% Similarity=0.304 Sum_probs=112.6
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 22899852037635788987799999999983898299996582679999999999741013224455568013999985
Q 000324 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (1665)
Q Consensus 700 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~ 779 (1665)
+.++|+.+... .+...+.+ +++.....++||||++++.+..++..|...+
T Consensus 2 l~q~~v~~~~~---~K~~~L~~-----ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~---------------------- 51 (168)
T d1t5ia_ 2 LQQYYVKLKDN---EKNRKLFD-----LLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---------------------- 51 (168)
T ss_dssp CEEEEEECCGG---GHHHHHHH-----HHHHSCCSSEEEECSSHHHHHHHHHHHHHTT----------------------
T ss_pred CEEEEEEECHH---HHHHHHHH-----HHHHCCCCEEEEEEEEEECCHHHHHHHCCCC----------------------
T ss_conf 69999994759---99999999-----9983899819999803441101333430124----------------------
Q ss_pred HHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 21013641034210785799368999788999999970999776874300002458986289996350137999975438
Q 000324 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (1665)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~l 859 (1665)
+.+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+.+||+ |++|.
T Consensus 52 ---------------~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~----~~~p~------ 106 (168)
T d1t5ia_ 52 ---------------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------ 106 (168)
T ss_dssp ---------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------
T ss_pred ---------------CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCHHHHH----HHCCC------
T ss_conf ---------------44321112221022221122111222114412330110012044134432----21132------
Q ss_pred CHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 99889843123689999982289999088738999
Q 000324 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (1665)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (1665)
++..|+||+||+||.| ..|.++.++++.+...+
T Consensus 107 ~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~~~~~ 139 (168)
T d1t5ia_ 107 DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKI 139 (168)
T ss_dssp SHHHHHHHHHHHTGGG--CCCEEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHCCCCC--CCCEEEEEECCHHHHHH
T ss_conf 2145765422315289--85189999884679999
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=6.9e-18 Score=139.80 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=99.8
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 38982999965826799999999997410132244555680139999852101364103421078579936899978899
Q 000324 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (1665)
Q Consensus 731 ~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~ 810 (1665)
..+.++||||++++.|+.++..|.+.+.. ...+||+|++.+|.
T Consensus 29 ~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~-------------------------------------a~~~Hg~~~~~eR~ 71 (174)
T d1c4oa2 29 ARGERTLVTVLTVRMAEELTSFLVEHGIR-------------------------------------ARYLHHELDAFKRQ 71 (174)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------EEEECTTCCHHHHH
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHCCCC-------------------------------------EEEEECCCCHHHHH
T ss_conf 65983899982303799999999865972-------------------------------------58986155418899
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99999709997768743000024589862899963501379999754389988984312368999998228999908873
Q 000324 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
.+++.|++|.++|||||+++++|+|+|++.+||+ |++++.. ...+..+|+||+|||||.+ .|.+++++....
T Consensus 72 ~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~----~~~~~~~-~~~~~~~~iq~~GR~gR~~---~g~~~~~~~~~~ 143 (174)
T d1c4oa2 72 ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARNA---RGEVWLYADRVS 143 (174)
T ss_dssp HHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCS-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HHHHHHHCCCEEEEEEEEEEEEECCCCCCCEEEE----ECCCCCC-CCCHHHHHHHHHHHHHHCC---CCEEEEEECCCC
T ss_conf 9999997798699996356421136777738998----0365445-5301677998861443047---870689626777
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.78 E-value=1e-17 Score=138.56 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=96.4
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 38982999965826799999999997410132244555680139999852101364103421078579936899978899
Q 000324 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (1665)
Q Consensus 731 ~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~ 810 (1665)
..+.++||||+++..++.++..|...+. .+..+||+|++.+|.
T Consensus 29 ~~~~~~iif~~~~~~~~~~~~~l~~~g~-------------------------------------~~~~~hg~~~~~eR~ 71 (181)
T d1t5la2 29 ERNERTLVTTLTKKMAEDLTDYLKEAGI-------------------------------------KVAYLHSEIKTLERI 71 (181)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHTTTC-------------------------------------CEEEECSSCCHHHHH
T ss_pred HCCCEEEEEEEHHHHHHHHHHHHHHCCC-------------------------------------CEEEECCCCCHHHHH
T ss_conf 6298289996103466788887876794-------------------------------------046741786388999
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99999709997768743000024589862899963501379999754389988984312368999998228999908873
Q 000324 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
.+++.|++|.++|||||+++++|+|+|.+++||+ ||+|... ...|..+|+||+|||||.| .|..+++.....
T Consensus 72 ~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~p~~~-~~~s~~~yi~R~GRagR~g---~~~~~~~~~~~~ 143 (181)
T d1t5la2 72 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARNA---NGHVIMYADTIT 143 (181)
T ss_dssp HHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEE----TTTTSCS-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEE----ECCCCCC-CCCCHHHHHHHHHHHCCCC---CCEEEEECCHHH
T ss_conf 9999997899888976247771389999788999----5699645-5435899999987624566---745674021145
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.77 E-value=4.5e-18 Score=141.10 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999988389909998248986099999999999984289999998997099999354878999999998731
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~ 574 (1665)
.|+.+|.+++..++..+ +.++.+|||+|||+++...+....... +.++++++|+++|+.|++++|.+..
T Consensus 113 ~~rdyQ~~av~~~l~~~-~~il~~pTGsGKT~i~~~i~~~~~~~~----------~~k~Liivp~~~Lv~Q~~~~f~~~~ 181 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNR-RRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHS-EEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHHHCC----------CCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 56467778779998549-721688711583078899999865325----------6328999767225789999998750
Q ss_pred CCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 03894999997888636764403649992723599998314998644540089992531001688048999999999998
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~ 654 (1665)
......+....++...........+|+++|++.+ .+.. ..+++.+++||+||||... +..+..++.+
T Consensus 182 ~~~~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~---~~~~--~~~~~~f~~VIvDEaH~~~---a~~~~~il~~----- 248 (282)
T d1rifa_ 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP--KEWFSQFGMMMNDECHLAT---GKSISSIISG----- 248 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHH---TTSC--GGGGGGEEEEEEETGGGCC---HHHHHHHTTT-----
T ss_pred CCCCCCCEEECCEECCCCCCCCCCEEEEEEEEHH---HHHC--CCCCCCCCEEEEECCCCCC---CHHHHHHHHH-----
T ss_conf 3653453034020025652332326999864032---2202--1005788799998997888---3209999974-----
Q ss_pred HHCCCCEEEEEECCCCCCH
Q ss_conf 5116870099993337896
Q 000324 655 ETTKEHIRLVGLSATLPNY 673 (1665)
Q Consensus 655 ~~~~~~~riv~lSATl~n~ 673 (1665)
.......+|||||+++.
T Consensus 249 --~~~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 249 --LNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp --CTTCCEEEEECSSCCTT
T ss_pred --CCCCCEEEEEEEECCCC
T ss_conf --61889699999615998
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.74 E-value=3.8e-17 Score=134.50 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89998999999987399919998789973899999999999985048998099998553999999999999986178895
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~ 1420 (1665)
.|+++|.+++..++.. .+.++.+|||+|||+++...+...+.. ... ++|||+|+++|+.|+++++. .++.....
T Consensus 113 ~~rdyQ~~av~~~l~~-~~~il~~pTGsGKT~i~~~i~~~~~~~--~~~--k~Liivp~~~Lv~Q~~~~f~-~~~~~~~~ 186 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred CCCHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHC--CCC--EEEEEECCCHHHHHHHHHHH-HHHCCCCC
T ss_conf 5646777877999854-972168871158307889999986532--563--28999767225789999998-75036534
Q ss_pred EEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999488721120027995999882568999972000246787018986045312888860599999999999862389
Q 000324 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (1665)
Q Consensus 1421 ~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (1665)
.+....++.....+.....+++++|++.+.... +..+++++++|+||||++. +..+. .+...+.+
T Consensus 187 ~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~-----~~~~~~f~~VIvDEaH~~~---a~~~~-------~il~~~~~ 251 (282)
T d1rifa_ 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP-----KEWFSQFGMMMNDECHLAT---GKSIS-------SIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC-----GGGGGGEEEEEEETGGGCC---HHHHH-------HHTTTCTT
T ss_pred CCEEECCEECCCCCCCCCCEEEEEEEEHHHHHC-----CCCCCCCCEEEEECCCCCC---CHHHH-------HHHHHCCC
T ss_conf 530340200256523323269998640322202-----1005788799998997888---32099-------99974618
Q ss_pred CCEEEEECCCCCCHH
Q ss_conf 970999954489968
Q 000324 1501 KIRIVALSTSLANAK 1515 (1665)
Q Consensus 1501 ~~riI~lSATl~n~~ 1515 (1665)
....+|||||+++.+
T Consensus 252 ~~~rlGlTaT~~~~~ 266 (282)
T d1rifa_ 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCEEEEEEEECCCCC
T ss_conf 896999996159987
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=1.6e-16 Score=130.02 Aligned_cols=132 Identities=20% Similarity=0.388 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 89877999999999838982999965826799999999997410132244555680139999852101364103421078
Q 000324 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (1665)
Q Consensus 716 ~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (1665)
+..+.+.+.+.+ ....+.++||||+++..+..++..|...+.....+.. .
T Consensus 145 ~~~l~~~l~~~~-~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g-----------------------------~ 194 (286)
T d1wp9a2 145 MDKLKEIIREQL-QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG-----------------------------Q 194 (286)
T ss_dssp HHHHHHHHHHHH-HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC-----------------------------S
T ss_pred HHHHHHHHHHHH-HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC-----------------------------C
T ss_conf 999999999999-7189984899967188679999999976996488605-----------------------------6
Q ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 57993689997889999999709997768743000024589862899963501379999754389988984312368999
Q 000324 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (1665)
Q Consensus 796 gv~~~Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g 875 (1665)
.....|++|+..+|..+.+.|++|.++|||||+++++|+|+|++++||+ ||++. ++..|+||+||+||.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~----~d~~~------~~~~~~Qr~GR~gR~~ 264 (286)
T d1wp9a2 195 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM 264 (286)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC
T ss_pred CCCCCCCHHCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCEEEE----ECCCC------CHHHHHHHHHHCCCCC
T ss_conf 6433420102288999999987699829997144020366888998999----58998------9899999998578799
Q ss_pred CCCCEEEEEEECCCC
Q ss_conf 998228999908873
Q 000324 876 YDSYGEGIIITGHSE 890 (1665)
Q Consensus 876 ~d~~G~~iil~~~~~ 890 (1665)
.|.++++++...
T Consensus 265 ---~~~~~~l~~~~~ 276 (286)
T d1wp9a2 265 ---PGRVIILMAKGT 276 (286)
T ss_dssp ---CSEEEEEEETTS
T ss_pred ---CCEEEEEEECCC
T ss_conf ---988999983898
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.8e-15 Score=122.55 Aligned_cols=156 Identities=23% Similarity=0.302 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHC---CC--CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999999999999883---89--9099982489860999999999999842899999989970999993548789999999
Q 000324 495 QLNRVQSRVYKSALS---SA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~--~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~ 569 (1665)
.||.-|.+++..+.. ++ -+.|+++.||||||.+|+.+++..+..+ .++++++|+..|+.|.+.+
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g-----------~q~~~m~Pt~~La~Qh~~~ 151 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQHYRR 151 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC-----------CCEEEEEEHHHHHHHHHHH
T ss_conf 67803788899999876236753156663535566599999999988513-----------5505874047665789999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCHHH-------HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCC-CCCH
Q ss_conf 9873103894999997888636764-------4036499927235999983149986445400899925310016-8804
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d-~rg~ 641 (1665)
|.+++..+|+.+..++|+.+...+. .++.+|+|+|-- .+. ... .+.++++|||||-|..+- .|..
T Consensus 152 ~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs---l~~-~~~---~f~~LglviiDEqH~fgv~Qr~~ 224 (264)
T d1gm5a3 152 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA---LIQ-EDV---HFKNLGLVIIDEQHRFGVKQREA 224 (264)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT---HHH-HCC---CCSCCCEEEEESCCCC-----CC
T ss_pred HHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHH---HHC-CCC---CCCCCCEEEECCCCCCCHHHHHH
T ss_conf 98862012312111011013699999999997799799996538---854-898---74556225632421002434799
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999999999998511687009999333789688999970
Q 000324 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (1665)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~~l~ 681 (1665)
.......+.++.+|||. -.+.++.-+.
T Consensus 225 ------------l~~~~~~~~~l~~SATP-iprtl~~~~~ 251 (264)
T d1gm5a3 225 ------------LMNKGKMVDTLVMSATP-IPRSMALAFY 251 (264)
T ss_dssp ------------CCSSSSCCCEEEEESSC-CCHHHHHHHT
T ss_pred ------------HHHHCCCCCEEEEECCC-CHHHHHHHHC
T ss_conf ------------99718699989997988-9999999983
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.3e-14 Score=116.51 Aligned_cols=154 Identities=19% Similarity=0.294 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHHC---C--CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999999999999883---8--99099982489860999999999999842899999989970999993548789999999
Q 000324 495 QLNRVQSRVYKSALS---S--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~--~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~ 569 (1665)
.+++=|.+++..+.. . ..+.|+|+.||||||.+|+.+++..+.. +.++++++|+..|+.|.+++
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~-----------g~qv~~l~Pt~~La~Q~~~~ 123 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HKQVAVLVPTTLLAQQHYDN 123 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TCEEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHC-----------CCCEEEECCHHHHHHHHHHH
T ss_conf 3460488899999999854576670898388877289999999999976-----------89569974688767999999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCHHH-------HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf 9873103894999997888636764-------403649992723599998314998644540089992531001688048
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~ 642 (1665)
|++++..++++|..++|..+...+. .+..+|+|+|-- +.... ..+.++++||+||-|..+ .-
T Consensus 124 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths----~l~~~---~~f~~LgLiIiDEeH~fg----~k 192 (233)
T d2eyqa3 124 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK----LLQSD---VKFKDLGLLIVDEEHRFG----VR 192 (233)
T ss_dssp HHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH----HHHSC---CCCSSEEEEEEESGGGSC----HH
T ss_pred HHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHH----HHCCC---CCCCCCCCEEEECHHHHH----HH
T ss_conf 99987247977976357653126999999996799788974202----33067---765554630222312332----57
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
Q ss_conf 999999999998511687009999333789688999
Q 000324 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678 (1665)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATl~n~~dva~ 678 (1665)
-+..+ .....++.++.+|||. -++-++.
T Consensus 193 Q~~~l-------~~~~~~~~~l~~SATP-iprtl~~ 220 (233)
T d2eyqa3 193 HKERI-------KAMRANVDILTLTATP-IPRTLNM 220 (233)
T ss_dssp HHHHH-------HHHHTTSEEEEEESSC-CCHHHHH
T ss_pred HHHHH-------HHHCCCCCEEEEECCH-HHHHHHH
T ss_conf 89999-------9618899889996551-0999999
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=9.5e-16 Score=124.60 Aligned_cols=136 Identities=28% Similarity=0.287 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999988389909998248986099999999999984289999998997099999354878999999998731
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~ 574 (1665)
.|+++|.+++..++.+ .+.++++|||+|||.++...+ ..+ +.+++|++|+++|+.|+.+.+....
T Consensus 70 ~Lr~yQ~eav~~~~~~-~~~ll~~~tG~GKT~~a~~~~-~~~-------------~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 70 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAI-NEL-------------STPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHH-HHS-------------CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHC-CCCEEEECCCCCCEEHHHHHH-HHH-------------CCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 8499999999999967-990999578998264377678-774-------------6724578724224899999998615
Q ss_pred CCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 03894999997888636764403649992723599998314998644540089992531001688048999999999998
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~ 654 (1665)
. ..++...|+.. ...+|+++|.+.+...... ....+++||+||+|.+.. ..+..++.
T Consensus 135 ~---~~~~~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a---~~~~~i~~------ 191 (206)
T d2fz4a1 135 E---EYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPA---ESYVQIAQ------ 191 (206)
T ss_dssp G---GGEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCT---TTHHHHHH------
T ss_pred C---CCHHHCCCCCC------CCCCCCCCEEHHHHHHHHH-----HCCCCCEEEEECCEECCC---HHHHHHHH------
T ss_conf 5---11110146532------1021001232255553676-----577577999989821783---79999985------
Q ss_pred HHCCCCEEEEEECCCC
Q ss_conf 5116870099993337
Q 000324 655 ETTKEHIRLVGLSATL 670 (1665)
Q Consensus 655 ~~~~~~~riv~lSATl 670 (1665)
.....+.+|||||+
T Consensus 192 --~~~~~~~lgLTATl 205 (206)
T d2fz4a1 192 --MSIAPFRLGLTATF 205 (206)
T ss_dssp --TCCCSEEEEEEESC
T ss_pred --CCCCCCEEEEECCC
T ss_conf --06898489995589
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.64 E-value=3.6e-16 Score=127.62 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=87.8
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 88389909998248986099999999999984289999998997099999354878999999998731038949999978
Q 000324 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (1665)
Q Consensus 507 ~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltG 586 (1665)
+++.+.+++++||||||||.+++.+++...... +.++++++|+++++.|.++.+... +..+....+
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~----------~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~ 68 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAF 68 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCC
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHHH----HHHHCCCCC
T ss_conf 787599679981799885599999999975313----------851565312106889999875324----322011200
Q ss_pred CCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88636764403649992723599998314998644540089992531001688048999999999998511687009999
Q 000324 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (1665)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (1665)
.... .....+.+.|... +.+.......+.++++||+||||.+..... .....+... ....+.++++|
T Consensus 69 ~~~~----~~~~~~~~~~~~~---l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~-~~~~~~~~~-----~~~~~~~~l~l 135 (140)
T d1yksa1 69 SAHG----SGREVIDAMCHAT---LTYRMLEPTRVVNWEVIIMDEAHFLDPASI-AARGWAAHR-----ARANESATILM 135 (140)
T ss_dssp CCCC----CSSCCEEEEEHHH---HHHHHTSSSCCCCCSEEEETTTTCCSHHHH-HHHHHHHHH-----HHTTSCEEEEE
T ss_pred CCCC----CCCCCHHHHHHHH---HHHHHHCCCCCCCEEEEEECCCCCCCHHHH-HHHHHHHHH-----HHCCCCCEEEE
T ss_conf 0122----3333002426999---999984166546420899754334675439-999999998-----25799998999
Q ss_pred CCCCC
Q ss_conf 33378
Q 000324 667 SATLP 671 (1665)
Q Consensus 667 SATl~ 671 (1665)
|||+|
T Consensus 136 TATPp 140 (140)
T d1yksa1 136 TATPP 140 (140)
T ss_dssp CSSCT
T ss_pred ECCCC
T ss_conf 82999
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.64 E-value=4.9e-16 Score=126.66 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=88.5
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 38982999965826799999999997410132244555680139999852101364103421078579936899978899
Q 000324 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (1665)
Q Consensus 731 ~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~ 810 (1665)
...+++||||+|++.|+.++..|...+.. +..+|++|+..+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~-------------------------------------~~~~H~~~~~~~-- 73 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGIN-------------------------------------AVAYYRGLDVSV-- 73 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCE-------------------------------------EEEECTTCCSCC--
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHCCCCC-------------------------------------HHHHHCCCHHHH--
T ss_conf 08998999909589999999998352632-------------------------------------033423530544--
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99999709997768743000024589862899963501379999754389988984312368999998228999908873
Q 000324 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (1665)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (1665)
|++|..+|||||+++++||| |++..||+.+..|++|. +..+|+||+||||| | ..|. +.+..+.+
T Consensus 74 -----~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~------~~~~y~qr~GR~gR-g--~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 74 -----IPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQ------DAVSRTQRRGRTGR-G--KPGI-YRFVAPGE 137 (138)
T ss_dssp -----CTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEEC------CHHHHHHHHTTBCS-S--SCEE-EEECCSSC
T ss_pred -----HHHHHCCEEEHHHHHHHCCC-CCCCEEEEEEECCCCCC------CHHHHHHHHCCCCC-C--CCCE-EEEECCCC
T ss_conf -----32331121410688870254-33461777776477999------99999868623048-9--9828-99973799
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=2.2e-14 Score=114.94 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89998999999987399919998789973899999999999985048998099998553999999999999986178895
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~ 1420 (1665)
.++++|.+++..+++.+ +.++.+|||+|||+++...+. .+ .. ++||++|+++|+.|+.+.++ .|+. .
T Consensus 70 ~Lr~yQ~eav~~~~~~~-~~ll~~~tG~GKT~~a~~~~~-~~-----~~--~~Liv~p~~~L~~q~~~~~~-~~~~---~ 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAIN-EL-----ST--PTLIVVPTLALAEQWKERLG-IFGE---E 136 (206)
T ss_dssp CCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHHH-HS-----CS--CEEEEESSHHHHHHHHHHHG-GGCG---G
T ss_pred CCCHHHHHHHHHHHHCC-CCEEEECCCCCCEEHHHHHHH-HH-----CC--CEEEEECCCCHHHHHHHHHH-HHCC---C
T ss_conf 84999999999999679-909995789982643776787-74-----67--24578724224899999998-6155---1
Q ss_pred EEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999488721120027995999882568999972000246787018986045312888860599999999999862389
Q 000324 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (1665)
Q Consensus 1421 ~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (1665)
.+....|+.. ...+++++|...+...... ....++++|+||+|++.+. .+..++ ... .
T Consensus 137 ~~~~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a~---~~~~i~-------~~~-~ 194 (206)
T d2fz4a1 137 YVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIA-------QMS-I 194 (206)
T ss_dssp GEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHH-------HTC-C
T ss_pred CHHHCCCCCC------CCCCCCCCEEHHHHHHHHH-----HCCCCCEEEEECCEECCCH---HHHHHH-------HCC-C
T ss_conf 1110146532------1021001232255553676-----5775779999898217837---999998-------506-8
Q ss_pred CCEEEEECCCCC
Q ss_conf 970999954489
Q 000324 1501 KIRIVALSTSLA 1512 (1665)
Q Consensus 1501 ~~riI~lSATl~ 1512 (1665)
....+|||||+.
T Consensus 195 ~~~~lgLTATl~ 206 (206)
T d2fz4a1 195 APFRLGLTATFE 206 (206)
T ss_dssp CSEEEEEEESCC
T ss_pred CCCEEEEECCCC
T ss_conf 984899955899
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4.4e-13 Score=105.66 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=120.6
Q ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHC-----CCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
Q ss_conf 6899986399-9899989999999873-----999199987899738999999999999850489980999985539999
Q 000324 1330 PLYEALYQGF-KHFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (1665)
Q Consensus 1330 ~~~~~l~~~f-~~~~~iQ~q~i~~l~~-----~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa 1403 (1665)
+..+.+...| -.+++-|.+++..+.. ...+.+++..||||||.+|..++...+.. +. ++++++|+..|+
T Consensus 43 ~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---g~--qv~~l~Pt~~La 117 (233)
T d2eyqa3 43 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLA 117 (233)
T ss_dssp HHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHC---CC--CEEEECCHHHHH
T ss_conf 9997666400113460488899999999854576670898388877289999999999976---89--569974688767
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHH-----CC--CCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 9999999998617889589999488721120-----02--7995999882568999972000246787018986045312
Q 000324 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (1665)
Q Consensus 1404 ~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l 1476 (1665)
.|.+..++++|+. .+.++..++|..+...+ .+ ...+|||+|-..+. ....+.++.++|+||-|..
T Consensus 118 ~Q~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~-------~~~~f~~LgLiIiDEeH~f 189 (233)
T d2eyqa3 118 QQHYDNFRDRFAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRF 189 (233)
T ss_dssp HHHHHHHHHHSTT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGS
T ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHC-------CCCCCCCCCCEEEECHHHH
T ss_conf 9999999998724-7977976357653126999999996799788974202330-------6776555463022231233
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88886059999999999986238997099995448996899998
Q 000324 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW 1520 (1665)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~~dl~~w 1520 (1665)
+-. .+.... ....++.++.+|||... +.++.-
T Consensus 190 g~k---------Q~~~l~--~~~~~~~~l~~SATPip-rtl~~~ 221 (233)
T d2eyqa3 190 GVR---------HKERIK--AMRANVDILTLTATPIP-RTLNMA 221 (233)
T ss_dssp CHH---------HHHHHH--HHHTTSEEEEEESSCCC-HHHHHH
T ss_pred HHH---------HHHHHH--HHCCCCCEEEEECCHHH-HHHHHH
T ss_conf 257---------899999--61889988999655109-999999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=1.1e-13 Score=109.98 Aligned_cols=166 Identities=23% Similarity=0.309 Sum_probs=121.2
Q ss_pred HHHHHHCCCC-CCCHHHHHHHHHHHC-----CCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 8999863999-899989999999873-----9991999878997389999999999998504899809999855399999
Q 000324 1331 LYEALYQGFK-HFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (1665)
Q Consensus 1331 ~~~~l~~~f~-~~~~iQ~q~i~~l~~-----~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~ 1404 (1665)
..+.+...+. .+|+-|.+|+..+.. ...+.+++..||||||++|..+++..+.. +. ++++++||..|+.
T Consensus 72 l~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---g~--q~~~m~Pt~~La~ 146 (264)
T d1gm5a3 72 LAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAI 146 (264)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC---CC--CEEEEEEHHHHHH
T ss_conf 999988400466780378889999987623675315666353556659999999998851---35--5058740476657
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHH-----CC--CCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 999999998617889589999488721120-----02--79959998825689999720002467870189860453128
Q 000324 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (1665)
Q Consensus 1405 q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~ 1477 (1665)
|.+..+++.|.. .+..+..++|+.+...+ .+ ...+|||||-.- +. ....+.+++++|+||-|..+
T Consensus 147 Qh~~~~~~~f~~-~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl----~~---~~~~f~~LglviiDEqH~fg 218 (264)
T d1gm5a3 147 QHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL----IQ---EDVHFKNLGLVIIDEQHRFG 218 (264)
T ss_dssp HHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH----HH---HCCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHH-CCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHH----HC---CCCCCCCCCEEEECCCCCCC
T ss_conf 899999886201-23121110110136999999999977997999965388----54---89874556225632421002
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 88860599999999999862389970999954489968999986
Q 000324 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI 1521 (1665)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n~~dl~~wl 1521 (1665)
-.. |.. .......+.++.+|||.. ++.++--+
T Consensus 219 v~Q---------r~~--l~~~~~~~~~l~~SATPi-prtl~~~~ 250 (264)
T d1gm5a3 219 VKQ---------REA--LMNKGKMVDTLVMSATPI-PRSMALAF 250 (264)
T ss_dssp -------------CC--CCSSSSCCCEEEEESSCC-CHHHHHHH
T ss_pred HHH---------HHH--HHHHCCCCCEEEEECCCC-HHHHHHHH
T ss_conf 434---------799--997186999899979889-99999998
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.1e-13 Score=109.88 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=100.4
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHH
Q ss_conf 98389829999658267999999999974101322445556801399998521013641034210785799368999788
Q 000324 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (1665)
Q Consensus 729 ~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~d 808 (1665)
+...++|+.+.|+...+...++..+.+.... ..|++.||.|+..+
T Consensus 27 El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~-----------------------------------~~i~~lHGkm~~~e 71 (211)
T d2eyqa5 27 EILRGGQVYYLYNDVENIQKAAERLAELVPE-----------------------------------ARIAIGHGQMRERE 71 (211)
T ss_dssp HHTTTCEEEEECCCSSCHHHHHHHHHHHCTT-----------------------------------SCEEECCSSCCHHH
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHHCCC-----------------------------------EEEEEEEECCCHHH
T ss_conf 9986995999971752126688888874773-----------------------------------37999972268888
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECC
Q ss_conf 99999997099977687430000245898628999635013799997543899889843123689999982289999088
Q 000324 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (1665)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (1665)
++.++..|.+|+++|||||.+.+.|||+|+.+++|- ++++. +..+++.|..||+||.+ ..|.|++++.+
T Consensus 72 ke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI----~~a~r-----fGLaQLhQLRGRVGR~~--~~s~c~l~~~~ 140 (211)
T d2eyqa5 72 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYAWLLTPH 140 (211)
T ss_dssp HHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--BCEEEEEEECC
T ss_pred HHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCEEEE----ECCHH-----CCCCCCCCCCCEEEECC--CCCEEEEEECC
T ss_conf 999999998298626887553440468998769987----13000-----33112223023355367--66548998568
Q ss_pred C
Q ss_conf 7
Q 000324 889 S 889 (1665)
Q Consensus 889 ~ 889 (1665)
.
T Consensus 141 ~ 141 (211)
T d2eyqa5 141 P 141 (211)
T ss_dssp G
T ss_pred C
T ss_conf 7
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.54 E-value=6.6e-15 Score=118.63 Aligned_cols=131 Identities=22% Similarity=0.182 Sum_probs=84.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 38990999824898609999999999998428999999899709999935487899999999873103894999997888
Q 000324 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1665)
Q Consensus 509 ~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~ 588 (1665)
++.+..++.||||||||.++...+++ .+.+++|++|+++|++|+.+.+.+.+.. ......++.
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~~--------------~~~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~ 68 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYAA--------------QGYKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVR 68 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHT--------------TTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH--------------CCCCEEEECCHHHHHHHHHHHHHHHHHC---CCCCCCCCC
T ss_conf 67888999968877999999999998--------------6993999767699999999999998520---246430012
Q ss_pred CCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 63676440364999272359999831499864454008999253100168804899999999999851168700999933
Q 000324 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (1665)
Q Consensus 589 ~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (1665)
... ....++++|.+... +.. ...+..+++||+||+|.+.......+ ..++...+ .....+++++||
T Consensus 69 ~~~----~~~~~~~~~~~~~~---~~~--~~~~~~~~~vIiDE~H~~~~~~~~~~----~~~l~~~~-~~~~~~~l~~TA 134 (136)
T d1a1va1 69 TIT----TGSPITYSTYGKFL---ADG--GCSGGAYDIIICDECHSTDATSILGI----GTVLDQAE-TAGARLVVLATA 134 (136)
T ss_dssp EEC----CCCSEEEEEHHHHH---HTT--GGGGCCCSEEEEETTTCCSHHHHHHH----HHHHHHTT-TTTCSEEEEEES
T ss_pred CCC----CCCCEEEEEEEEEC---CCC--CHHHHCCCEEEEECCCCCCHHHHHHH----HHHHHHHH-HCCCCCEEEEEC
T ss_conf 211----34422788641000---235--30241599999825553588789999----99999998-779972999927
Q ss_pred CC
Q ss_conf 37
Q 000324 669 TL 670 (1665)
Q Consensus 669 Tl 670 (1665)
|.
T Consensus 135 TP 136 (136)
T d1a1va1 135 TP 136 (136)
T ss_dssp SC
T ss_pred CC
T ss_conf 99
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.52 E-value=3.7e-14 Score=113.34 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=91.1
Q ss_pred HHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 87399919998789973899999999999985048998099998553999999999999986178895899994887211
Q 000324 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (1665)
Q Consensus 1353 l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~ 1432 (1665)
++..+.+++++||||||||+++..+++..... .+. ++++++|++++++|.++.+. .+ +..+....+.
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--~~~--~vli~~p~~~l~~q~~~~~~-~~----~~~~~~~~~~---- 69 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRL--RTLVLAPTRVVLSEMKEAFH-GL----DVKFHTQAFS---- 69 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-TS----CEEEESSCCC----
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH--CCC--EEEEEECCHHHHHHHHHHHH-HH----HHHHCCCCCC----
T ss_conf 78759967998179988559999999997531--385--15653121068899998753-24----3220112000----
Q ss_pred HHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 20027995999882568999972000246787018986045312888860599999999999862389970999954489
Q 000324 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (1665)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~ 1512 (1665)
........+.+.|...+.. .+.....+.+++++|+||||.+.... ...+..+. .+. ..++.++|+||||+|
T Consensus 70 ~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~~~---~~~--~~~~~~~l~lTATPp 140 (140)
T d1yksa1 70 AHGSGREVIDAMCHATLTY---RMLEPTRVVNWEVIIMDEAHFLDPAS-IAARGWAA---HRA--RANESATILMTATPP 140 (140)
T ss_dssp CCCCSSCCEEEEEHHHHHH---HHTSSSCCCCCSEEEETTTTCCSHHH-HHHHHHHH---HHH--HTTSCEEEEECSSCT
T ss_pred CCCCCCCCHHHHHHHHHHH---HHHCCCCCCCEEEEEECCCCCCCHHH-HHHHHHHH---HHH--HCCCCCEEEEECCCC
T ss_conf 1223333002426999999---98416654642089975433467543-99999999---982--579999899982999
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.4e-14 Score=116.27 Aligned_cols=130 Identities=22% Similarity=0.332 Sum_probs=95.3
Q ss_pred HHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH-CCCCEEEE
Q ss_conf 999999983-8982999965826799999999997410132244555680139999852101364103421-07857993
Q 000324 723 CYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL-LPYGFAIH 800 (1665)
Q Consensus 723 ~~~~i~~~~-~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~l-l~~gv~~~ 800 (1665)
+++.+.... .++|+.+.|+...+.+.+...-...... ...+.+ ..+.+++.
T Consensus 18 v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~---------------------------~l~~~~~p~~~v~~l 70 (206)
T d1gm5a4 18 VYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYE---------------------------YLSKEVFPEFKLGLM 70 (206)
T ss_dssp HHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHH---------------------------SGGGSCC---CBCCC
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHH---------------------------HHHHHCCCCCEEEEE
T ss_conf 99999999974998899975144553211013678999---------------------------999850899728898
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCE
Q ss_conf 68999788999999970999776874300002458986289996350137999975438998898431236899999822
Q 000324 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (1665)
Q Consensus 801 Hagl~~~dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G 880 (1665)
||+|++.+|+.++..|++|+++|||||+++++|||+|++++||. ++++. .+.+.+.|..||+||.+ ..|
T Consensus 71 HG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii----~~a~~-----fglsqlhQlrGRvGR~~--~~~ 139 (206)
T d1gm5a4 71 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRGG--QEA 139 (206)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCSS--TTC
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCCCCEEEE----ECCCC-----CCHHHHHHHHHHEEECC--CCC
T ss_conf 60365999999999997798789997024310455267848999----80488-----63778876520212121--254
Q ss_pred EEEEEECCCC
Q ss_conf 8999908873
Q 000324 881 EGIIITGHSE 890 (1665)
Q Consensus 881 ~~iil~~~~~ 890 (1665)
.|++++++..
T Consensus 140 ~~~l~~~~~~ 149 (206)
T d1gm5a4 140 YCFLVVGDVG 149 (206)
T ss_dssp EEECCCCSCC
T ss_pred EEEEEECCCC
T ss_conf 0576522432
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.48 E-value=2.2e-14 Score=114.89 Aligned_cols=106 Identities=17% Similarity=0.102 Sum_probs=89.8
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHH---
Q ss_conf 98299996582679999999999741013224455568013999985210136410342107857993689997889---
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR--- 809 (1665)
Q Consensus 733 ~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR--- 809 (1665)
++++||||+||+.|+.++..|...+.+ +..+|++|++..|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~-------------------------------------a~~~Hgglsq~~R~~~ 78 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGIN-------------------------------------AVAYYRGLDVSVIPTS 78 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------EEEECTTSCGGGSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCC-------------------------------------EEEEECCCHHHHHHHC
T ss_conf 998999879689999999999777987-------------------------------------8997589407778731
Q ss_pred -------HHHHHHHHCCCCCEEEECCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf -------99999970999776874300002---45898628999635013799997543899889843123689999982
Q 000324 810 -------QLVEDLFGDGHVQVLVSTATLAW---GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (1665)
Q Consensus 810 -------~~v~~~F~~g~i~VLVaT~tla~---GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~ 879 (1665)
..+++.|..|..+++|+|+++++ |+|++.+.+||+ |+.|. |+.+|+||+||+|| | ..
T Consensus 79 gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~----~d~P~------SvesyIQRiGRTGR-G--r~ 145 (299)
T d1a1va2 79 GDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET----TTLPQ------DAVSRTQRRGRTGR-G--KP 145 (299)
T ss_dssp SSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEE----EEEEC------BHHHHHHHHTTBCS-S--SC
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCCCCCCCCEEEEE----CCCCC------CHHHHHHHCCCCCC-C--CC
T ss_conf 205777899999886599838999862010478788785169996----89998------98998762144379-9--98
Q ss_pred EEEEEEECC
Q ss_conf 289999088
Q 000324 880 GEGIIITGH 888 (1665)
Q Consensus 880 G~~iil~~~ 888 (1665)
|....+...
T Consensus 146 G~~~~l~~~ 154 (299)
T d1a1va2 146 GIYRFVAPG 154 (299)
T ss_dssp EEEEESCSC
T ss_pred CEEEEEECC
T ss_conf 169897147
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1.2e-15 Score=123.99 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 98299996582679999999999741013224455568013999985210136410342107857993689997889999
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1665)
Q Consensus 733 ~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v 812 (1665)
+.++||||++++.+..++..|... +||+|++.+|..+
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~-------------------------------------------~hg~~~~~~R~~~ 61 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNK-------------------------------------------FRIGIVTATKKGD 61 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-------------------------------------------SCEEECTTSSSHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHH-------------------------------------------CCCCCCHHHHHHH
T ss_conf 979899989878999999999873-------------------------------------------4378999999999
Q ss_pred HHHHHCCCCCEEEEC----CCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEC
Q ss_conf 999709997768743----00002458986-2899963501379999754389988984312368999998228999908
Q 000324 813 EDLFGDGHVQVLVST----ATLAWGVNLPA-HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1665)
Q Consensus 813 ~~~F~~g~i~VLVaT----~tla~GVnlP~-~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (1665)
++.|++|.++||||| +.+++|+|+|. +++||+ ||+|. |.|++||+||.| ..|.++++..
T Consensus 62 ~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~----~d~P~----------~~~r~gR~~R~g--~~~~~~~~~~ 125 (248)
T d1gkub2 62 YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VGCPS----------FRVTIEDIDSLS--PQMVKLLAYL 125 (248)
T ss_dssp HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE----ESCCE----------EEEECSCGGGSC--HHHHHHHHTT
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHCCCCCCCCCEEEE----ECCCC----------CHHHHHHHHCCC--CCEEEEEECC
T ss_conf 9999827985999966660246513676654018999----67974----------000054563167--4517656506
Q ss_pred CCCHHHHHHH
Q ss_conf 8738999984
Q 000324 888 HSELRYYLSL 897 (1665)
Q Consensus 888 ~~~~~~y~~l 897 (1665)
..+......+
T Consensus 126 ~~~~~~~~~l 135 (248)
T d1gkub2 126 YRNVDEIERL 135 (248)
T ss_dssp TSCHHHHHTT
T ss_pred HHHHHHHHHH
T ss_conf 7667899999
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.44 E-value=9.9e-14 Score=110.28 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=88.0
Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHH
Q ss_conf 99838982999965826799999999997410132244555680139999852101364103421078579936899978
Q 000324 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRG 807 (1665)
Q Consensus 728 ~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~ 807 (1665)
+....+.++||||++...+..+++.| ++..+||+++..
T Consensus 88 l~~~~~~k~lvf~~~~~~~~~l~~~l------------------------------------------~~~~i~g~~~~~ 125 (200)
T d2fwra1 88 LERHRKDKIIIFTRHNELVYRISKVF------------------------------------------LIPAITHRTSRE 125 (200)
T ss_dssp HHHTSSSCBCCBCSCHHHHHHHHHHT------------------------------------------TCCBCCSSSCSH
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHC------------------------------------------CCCEEECCCCHH
T ss_conf 99677980799947599999987633------------------------------------------855255799999
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC-CEEEEEEE
Q ss_conf 89999999709997768743000024589862899963501379999754389988984312368999998-22899990
Q 000324 808 DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS-YGEGIIIT 886 (1665)
Q Consensus 808 dR~~v~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~-~G~~iil~ 886 (1665)
+|..+++.|++|.++|||||++++.|+|+|.+.+||. |+++. ++.+++||+||++|.|.++ .+..+-++
T Consensus 126 ~R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~----~~~~~------s~~~~~Q~iGR~~R~~~~k~~~~i~~~v 195 (200)
T d2fwra1 126 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELI 195 (200)
T ss_dssp HHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHCCCCCCCCCEEEE----ECCCC------CHHHHHHHHHHCCCCCCCCCEEEEEEEE
T ss_conf 9999998863487035430210210257998888999----67997------9999999987448799998679999995
Q ss_pred CC
Q ss_conf 88
Q 000324 887 GH 888 (1665)
Q Consensus 887 ~~ 888 (1665)
..
T Consensus 196 ~~ 197 (200)
T d2fwra1 196 SR 197 (200)
T ss_dssp EC
T ss_pred CC
T ss_conf 29
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.42 E-value=3e-13 Score=106.91 Aligned_cols=131 Identities=18% Similarity=0.048 Sum_probs=86.9
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH
Q ss_conf 39991999878997389999999999998504899809999855399999999999998617889589999488721120
Q 000324 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (1665)
Q Consensus 1355 ~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~ 1434 (1665)
++....++.+|||||||+.+...++ . .+. +++|++|+++|++|+.+.+.+.+... .....++...
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~----~--~~~--~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~--- 70 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA----A--QGY--KVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVRTI--- 70 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----T--TTC--CEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCEE---
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH----H--CCC--CEEEECCHHHHHHHHHHHHHHHHHCC----CCCCCCCCCC---
T ss_conf 6788899996887799999999999----8--699--39997676999999999999985202----4643001221---
Q ss_pred CCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 02799599988256899997200024678701898604531288886059999999999986238997099995448
Q 000324 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl 1511 (1665)
.....++++|.+..... ....+.+++++|+||+|.+.......+ ..+...... ..+.+++++|||.
T Consensus 71 -~~~~~~~~~~~~~~~~~-----~~~~~~~~~~vIiDE~H~~~~~~~~~~----~~~l~~~~~-~~~~~~l~~TATP 136 (136)
T d1a1va1 71 -TTGSPITYSTYGKFLAD-----GGCSGGAYDIIICDECHSTDATSILGI----GTVLDQAET-AGARLVVLATATP 136 (136)
T ss_dssp -CCCCSEEEEEHHHHHHT-----TGGGGCCCSEEEEETTTCCSHHHHHHH----HHHHHHTTT-TTCSEEEEEESSC
T ss_pred -CCCCCEEEEEEEEECCC-----CCHHHHCCCEEEEECCCCCCHHHHHHH----HHHHHHHHH-CCCCCEEEEECCC
T ss_conf -13442278864100023-----530241599999825553588789999----999999987-7997299992799
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=7e-13 Score=104.27 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=73.0
Q ss_pred CCCCHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3200047--56999999988255249589999997658898761198655899210135013899988999999999867
Q 000324 904 IESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981 (1665)
Q Consensus 904 iES~l~~--~l~d~lnaeI~~g~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~d~~l~~~~~~li~~a~~~L~~ 981 (1665)
|+|+|.. .|.+|+|+||+.|++.+.+++++|+++||+|+|+..|| .++|+.++..|.+
T Consensus 2 i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l--------------------~~~i~~~l~~L~~ 61 (85)
T d2p6ra1 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL--------------------SYELERVVRQLEN 61 (85)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC--------------------HHHHHHHHHHHHH
T ss_pred CEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCH--------------------HHHHHHHHHHHHH
T ss_conf 53177985899999999998488899999999999869987600259--------------------9999999999998
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 687432357894225938999998258
Q 000324 982 NNLVKYDRKSGYFQVTDLGRIASYYYI 1008 (1665)
Q Consensus 982 ~~~i~~~~~~~~~~~t~lG~i~s~~yi 1008 (1665)
++||+.+ +.+.+|++|+++|+|||
T Consensus 62 ~~~I~~~---~~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 62 WGMVVEA---AHLAPTKLGSLVSRLYI 85 (85)
T ss_dssp TTSEEES---SSEEECHHHHHHHHTTC
T ss_pred CCCCCCC---CCCCCCHHHHHHHHHHC
T ss_conf 7872226---65040789999999759
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.31 E-value=2.8e-12 Score=99.99 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=72.4
Q ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCH
Q ss_conf 99987349997999958627899999999870135887321124699332035575544999998742458998589999
Q 000324 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (1665)
Q Consensus 1566 ~i~~~l~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~ 1645 (1665)
.+...+..++++||||+||++|+.+|..|............ + ...+........+..|.+++.+||++||++|++
T Consensus 32 l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~ 106 (201)
T d2p6ra4 32 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG-L----EKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 106 (201)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS-H----HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHH-H----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999976996899968999999999999998875302257-8----999887512355699999985117888777625
Q ss_pred HHHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999995399608989
Q 000324 1646 TDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1646 ~dR~~v~~~F~~G~i~VLVC 1665 (1665)
.+|..++++|++|.++||||
T Consensus 107 ~~r~~ie~~f~~g~i~vlva 126 (201)
T d2p6ra4 107 GQRRVVEDAFRRGNIKVVVA 126 (201)
T ss_dssp HHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 66899999986798149970
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.24 E-value=4.5e-11 Score=91.45 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=86.5
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 98299996582679999999999741013224455568013999985210136410342107857993689997889999
Q 000324 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (1665)
Q Consensus 733 ~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~~v 812 (1665)
.++++|||++..++..+|..|...+. .|..+||.+...++.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~-------------------------------------~V~~l~~~~~~~e~~-- 76 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGK-------------------------------------SVVVLNRKTFEREYP-- 76 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------------------------------------CEEECCSSSCC------
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCC-------------------------------------EEEEECCCCCHHHHH--
T ss_conf 99899994999999999999986698-------------------------------------099976867576776--
Q ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECC-----CCCCCCCC----CCCCCCHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 9997099977687430000245898628999635-----01379999----75438998898431236899999822899
Q 000324 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT-----QIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (1665)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVnlP~~~vVI~~t-----~~yd~~~g----~~~~ls~~~~~Qr~GRAGR~g~d~~G~~i 883 (1665)
.|.+|..++||||+++++|+|++ +..||+.. ..|++..+ .-.++|.++..||.||+||.+ ...+..+
T Consensus 77 --~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~-~~~~~~~ 152 (299)
T d1yksa2 77 --TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSY 152 (299)
T ss_dssp ------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEE
T ss_pred --HHHCCCCCEEEEECHHHHCEECC-CEEEEECCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCCC-CCCEEEE
T ss_conf --65157767899700365364127-3389866850000356587882687324268999998646666667-8860899
Q ss_pred EE
Q ss_conf 99
Q 000324 884 II 885 (1665)
Q Consensus 884 il 885 (1665)
++
T Consensus 153 ~y 154 (299)
T d1yksa2 153 YY 154 (299)
T ss_dssp EE
T ss_pred EE
T ss_conf 93
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.7e-10 Score=85.95 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=81.7
Q ss_pred CEEEEEEEE----CCCCEEEEEEEECCCCCCCCCCCCCCCC------EEEEEEECCCCEEEEEEEEEEEECCCCCCEEEE
Q ss_conf 019899952----2575389999981597447788887564------899999179984887765543312334650677
Q 000324 1199 LILAAHVQP----ITRTVLKVELTITPDFLWDDKVHGYVEP------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLN 1268 (1665)
Q Consensus 1199 l~i~~~v~p----it~~~l~v~l~i~~~~~w~~~~h~~~~~------~wi~v~d~~~~~il~~~~~~l~~~~~~~~~~~~ 1268 (1665)
+++++.++- ..+..+.++++++++..-...+|+|.+| |||+|+|.+.+.|+...++.+++. ..+.++
T Consensus 2 i~~~~~v~d~~~v~~g~~~~l~V~l~R~~~~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~---~~~~l~ 78 (114)
T d2q0zx2 2 IELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLD 78 (114)
T ss_dssp EEEEEEETTGGGCBTTSEEEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE---EEEEEE
T ss_pred CEEEEEECCCCCEECCCEEEEEEEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC---EEEEEE
T ss_conf 32899983876462699099999998768869719878999987221999999888898999867622551---589999
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 7413679999933899950465566664443334
Q 000324 1269 FTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (1665)
Q Consensus 1269 f~vp~~~p~~~~~~i~viSD~wlg~e~~~~vsl~ 1302 (1665)
|.+|. +|.++|.++++||+|+|+|.+..+.+.
T Consensus 79 f~~p~--~G~~~~~l~~~sDsY~G~D~~~~~~~~ 110 (114)
T d2q0zx2 79 FVAPA--TGAHNYTLYFMSDAYMGCDQEYKFSVD 110 (114)
T ss_dssp EECCS--SEEEEEEEEEEESSCSSCCEEEEEEEE
T ss_pred EECCC--CCEEEEEEEEECCCCCCCCEEEEEEEE
T ss_conf 96799--970999999986455050258999999
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.10 E-value=7.3e-09 Score=75.76 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHHH--------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 999999999999988--------389909998248986099999999999984289999998997099999354878999
Q 000324 494 TQLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (1665)
Q Consensus 494 ~~l~~iQ~~~i~~~l--------~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q 565 (1665)
..|.++|.+++.-++ ......|++-..|.|||..++-.+...+....... ....++++|+|. +|+.|
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~----~~~~~~LIV~P~-sl~~q 128 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK----PEIDKVIVVSPS-SLVRN 128 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSS----CSCSCEEEEECH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC----CCCCCEEEECCC-HHHHH
T ss_conf 1020999999999999877354126874698747878899999999999998460116----887737998050-45578
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHH-----------HCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 99999873103894999997888636764-----------4036499927235999983149986445400899925310
Q 000324 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-----------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (1665)
Q Consensus 566 ~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-----------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~ 634 (1665)
+.+++.+++.. ...+..++|+....... ...++++++|.+.+.. ... ...-..+.+||+||+|.
T Consensus 129 W~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~---~~~-~l~~~~~~~vI~DEaH~ 203 (298)
T d1z3ix2 129 WYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL---HAE-VLHKGKVGLVICDEGHR 203 (298)
T ss_dssp HHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH---HTT-TTTTSCCCEEEETTGGG
T ss_pred HHHHHHHHCCC-CEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC---CHH-CCCCCCEEEEECCCCCC
T ss_conf 99988763577-52599996862777888998765303766661399986123222---200-03342114541142322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 0168804899999999999851168700999933378
Q 000324 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl~ 671 (1665)
+..........+ . ... ..+.++||||.-
T Consensus 204 ikn~~s~~~~a~-----~---~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 204 LKNSDNQTYLAL-----N---SMN-AQRRVLISGTPI 231 (298)
T ss_dssp CCTTCHHHHHHH-----H---HHC-CSEEEEECSSCS
T ss_pred CCCCCCHHHHHH-----H---CCC-CCEEEEECCHHH
T ss_conf 013220345644-----2---134-112565226077
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.05 E-value=2.7e-08 Score=71.76 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=91.5
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 38982999965826799999999997410132244555680139999852101364103421078579936899978899
Q 000324 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (1665)
Q Consensus 731 ~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR~ 810 (1665)
..+.++|||++.+.....+...|...+. .+..++|+++..+|.
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~~g~-------------------------------------~~~~l~G~~~~~~R~ 158 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRY-------------------------------------LYVRLDGTMSIKKRA 158 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTC-------------------------------------CEEEECSSCCHHHHH
T ss_pred HCCCCEEEEEEHHHHHHHHHHHHHHHHC-------------------------------------CCCCCCCCHHHHHHH
T ss_conf 5189516886301456799999763002-------------------------------------411011100278899
Q ss_pred HHHHHHHCCCCC---EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEC
Q ss_conf 999997099977---68743000024589862899963501379999754389988984312368999998228999908
Q 000324 811 LVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (1665)
Q Consensus 811 ~v~~~F~~g~i~---VLVaT~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (1665)
.+.+.|.++... +|++|.+.+.|+|++....||. |++.- ++....|++||+-|.|....-.++.+..
T Consensus 159 ~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~----~d~~w------np~~~~Qa~~R~~R~GQ~~~V~v~rli~ 228 (346)
T d1z3ix1 159 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FDPDW------NPANDEQAMARVWRDGQKKTCYIYRLLS 228 (346)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CSCCS------SHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred HHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCEEEEE----ECCCC------CCCHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf 9998651023433025403314443356564307999----45788------6155867633340348998438999873
Q ss_pred CCCH
Q ss_conf 8738
Q 000324 888 HSEL 891 (1665)
Q Consensus 888 ~~~~ 891 (1665)
....
T Consensus 229 ~~Ti 232 (346)
T d1z3ix1 229 TGTI 232 (346)
T ss_dssp TTSH
T ss_pred CCCH
T ss_conf 8989
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.01 E-value=1.4e-08 Score=73.84 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999988---389909998248986099999999999984289999998997099999354878999999998
Q 000324 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
+|.++|.+++..++ .....+|++-++|.|||..+...+ ..+..... ..++++|+| ..++.++.+++.
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~-~~~~~~~~--------~~~~LIv~p-~~l~~~W~~e~~ 81 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKENE--------LTPSLVICP-LSVLKNWEEELS 81 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTC--------CSSEEEEEC-STTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHHHHCCC--------CCCCCEECC-HHHHHHHHHHHH
T ss_conf 50699999999999862169987998589988699998735-54421235--------564411053-554267777777
Q ss_pred HHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73103894999997888636764403649992723599998314998644540089992531001688048999999999
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~ 651 (1665)
+.... ..+....+.. ........+|+++|.+.+....+ ..--...++|+||+|.+..........+
T Consensus 82 ~~~~~--~~~~~~~~~~--~~~~~~~~~vvi~~~~~~~~~~~-----l~~~~~~~vI~DEah~~k~~~s~~~~~~----- 147 (230)
T d1z63a1 82 KFAPH--LRFAVFHEDR--SKIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAV----- 147 (230)
T ss_dssp HHCTT--SCEEECSSST--TSCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHHHH-----
T ss_pred HHCCC--CCCEEECCCC--CHHHCCCCCEEEEEHHHHHHHHH-----HHCCCCEEEEEEHHHCCCCCCHHHHHHH-----
T ss_conf 64025--4410101421--00002576889854999986888-----7416513999971003443220556665-----
Q ss_pred HHHHHCCCCEEEEEECCCCCC--HHHHHHHHH
Q ss_conf 998511687009999333789--688999970
Q 000324 652 RQIETTKEHIRLVGLSATLPN--YEDVALFLR 681 (1665)
Q Consensus 652 ~~~~~~~~~~riv~lSATl~n--~~dva~~l~ 681 (1665)
.... ....++||||.-+ ..|+...+.
T Consensus 148 ---~~l~-a~~r~~LTgTPi~n~~~dl~~ll~ 175 (230)
T d1z63a1 148 ---KELK-SKYRIALTGTPIENKVDDLWSIMT 175 (230)
T ss_dssp ---HTSC-EEEEEEECSSCSTTCHHHHHHHHH
T ss_pred ---HHHC-CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf ---4404-655799725267767888998887
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.99 E-value=3.3e-08 Score=71.07 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHHHC--------CCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHH
Q ss_conf 9899989999999873--------999199987899738999999999999850489--980999985539999999999
Q 000324 1340 KHFNPIQTQVFTVLYN--------TDDNVLVAAPTGSGKTICSEFAILRNHQKASET--GVMRAVYIAPLEALAKERYRD 1409 (1665)
Q Consensus 1340 ~~~~~iQ~q~i~~l~~--------~~dnvii~apTGSGKTl~~~lail~~l~~~~~~--~~~raivI~Pt~eLa~q~~~~ 1409 (1665)
..+.|+|.+++..++. ....+|++-..|.|||+.+...+...+...... ...++|||+|.. ++.|+.++
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~E 132 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNE 132 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCH-HHHHHHHH
T ss_conf 10209999999999998773541268746987478788999999999999984601168877379980504-55789998
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCHH-----------CCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
Q ss_conf 9998617889589999488721120-----------02799599988256899997200024678701898604531288
Q 000324 1410 WEIKFGQGLGMRVVELTGETAMDLK-----------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (1665)
Q Consensus 1410 ~~~~f~~~~~~~V~~ltG~~~~~~~-----------~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~ 1478 (1665)
+.+.+.. ...+..+.|+...... .....+++++|.+.+...... ..-...+++|+||+|.+..
T Consensus 133 i~k~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~----l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCCT
T ss_pred HHHHCCC--CEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHC----CCCCCEEEEECCCCCCCCC
T ss_conf 8763577--525999968627778889987653037666613999861232222000----3342114541142322013
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 88605999999999998623899709999544899
Q 000324 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.....+..+. .+. ..+.++||+|.-.
T Consensus 207 ~~s~~~~a~~--------~l~-~~~rllLTGTPi~ 232 (298)
T d1z3ix2 207 SDNQTYLALN--------SMN-AQRRVLISGTPIQ 232 (298)
T ss_dssp TCHHHHHHHH--------HHC-CSEEEEECSSCSG
T ss_pred CCCHHHHHHH--------CCC-CCEEEEECCHHHH
T ss_conf 2203456442--------134-1125652260776
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.86 E-value=2.9e-08 Score=71.48 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 88987799999999983898299996582679999999999741013224455568013999985210136410342107
Q 000324 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (1665)
Q Consensus 715 ~~~~l~~~~~~~i~~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (1665)
++..+.+.+.+. ...+.++||||+.+.....+...+.... .
T Consensus 70 K~~~l~~~l~~~---~~~g~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~ 110 (244)
T d1z5za1 70 KMIRTMEIIEEA---LDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------N 110 (244)
T ss_dssp HHHHHHHHHHHH---HHTTCCEEEEESCHHHHHHHHHHHHHHH------------------------------------C
T ss_pred HHHHHHHHHHHH---CCCCCCEEEEEECEEHHHHHHHHHHHHC------------------------------------C
T ss_conf 899999988764---1466625999601006778999987613------------------------------------5
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHCC-CCCEEEE-CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 8579936899978899999997099-9776874-3000024589862899963501379999754389988984312368
Q 000324 795 YGFAIHHAGMTRGDRQLVEDLFGDG-HVQVLVS-TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (1665)
Q Consensus 795 ~gv~~~Hagl~~~dR~~v~~~F~~g-~i~VLVa-T~tla~GVnlP~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAG 872 (1665)
..+..+||+++..+|..+.+.|.++ ..+||++ |.+.+.|+|++....||..+.+|+ +..+.|+.||+-
T Consensus 111 ~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn----------~~~~~Qa~~R~~ 180 (244)
T d1z5za1 111 TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWN----------PAVEDQATDRVY 180 (244)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSC----------TTTC--------
T ss_pred CEEEEEECCCCHHCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCHHH----------HHHHHHHCCEEE
T ss_conf 1289996664200011045544301210010143112356621120014320471244----------677765425015
Q ss_pred CCCCCCCEEEEEEECCCCH
Q ss_conf 9999982289999088738
Q 000324 873 RPQYDSYGEGIIITGHSEL 891 (1665)
Q Consensus 873 R~g~d~~G~~iil~~~~~~ 891 (1665)
|.|....-.++.+......
T Consensus 181 R~Gq~~~v~i~~l~~~~Ti 199 (244)
T d1z5za1 181 RIGQTRNVIVHKLISVGTL 199 (244)
T ss_dssp ------CCEEEEEEETTSH
T ss_pred ECCCCCCEEEEEEEECCCH
T ss_conf 6499972599998618999
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.86 E-value=4.2e-08 Score=70.35 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
Q ss_conf 89998999999987---399919998789973899999999999985048998099998553999999999999986178
Q 000324 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~---~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~ 1417 (1665)
.+.|+|.+++..++ .....++++-+.|.|||+.+...+ ..+....... ++++|+| ..+..|+...+. ++...
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~-~~~~~~~~~~--~~LIv~p-~~l~~~W~~e~~-~~~~~ 86 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKENELT--PSLVICP-LSVLKNWEEELS-KFAPH 86 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTCCS--SEEEEEC-STTHHHHHHHHH-HHCTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHHHHCCCCC--CCCEECC-HHHHHHHHHHHH-HHCCC
T ss_conf 50699999999999862169987998589988699998735-5442123556--4411053-554267777777-64025
Q ss_pred CCCEEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89589999488721120027995999882568999972000246787018986045312888860599999999999862
Q 000324 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (1665)
Q Consensus 1418 ~~~~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~ 1497 (1665)
..+....+ .. ........+|+++|.+.+...... .--...++|+||+|.+..........+. .
T Consensus 87 --~~~~~~~~-~~-~~~~~~~~~vvi~~~~~~~~~~~l-----~~~~~~~vI~DEah~~k~~~s~~~~~~~--------~ 149 (230)
T d1z63a1 87 --LRFAVFHE-DR-SKIKLEDYDIILTTYAVLLRDTRL-----KEVEWKYIVIDEAQNIKNPQTKIFKAVK--------E 149 (230)
T ss_dssp --SCEEECSS-ST-TSCCGGGSSEEEEEHHHHTTCHHH-----HTCCEEEEEEETGGGGSCTTSHHHHHHH--------T
T ss_pred --CCCEEECC-CC-CHHHCCCCCEEEEEHHHHHHHHHH-----HCCCCEEEEEEHHHCCCCCCHHHHHHHH--------H
T ss_conf --44101014-21-000025768898549999868887-----4165139999710034432205566654--------4
Q ss_pred CCCCCEEEEECCCCCC--HHHHHHHHC
Q ss_conf 3899709999544899--689999863
Q 000324 1498 VENKIRIVALSTSLAN--AKDLGEWIG 1522 (1665)
Q Consensus 1498 ~~~~~riI~lSATl~n--~~dl~~wl~ 1522 (1665)
+. ....++||+|..+ ..|+..-+.
T Consensus 150 l~-a~~r~~LTgTPi~n~~~dl~~ll~ 175 (230)
T d1z63a1 150 LK-SKYRIALTGTPIENKVDDLWSIMT 175 (230)
T ss_dssp SC-EEEEEEECSSCSTTCHHHHHHHHH
T ss_pred HC-CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 04-655799725267767888998887
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.82 E-value=4e-08 Score=70.48 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC---C-CCCCCCCCC----CHHHHHHHHHH
Q ss_conf 98889999974199-999898999850793478796781489999998503---9-998889898----92799999999
Q 000324 1009 SHGTISTYNEHLKP-TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR---V-PIPVKESLE----EPSAKINVLLQ 1079 (1665)
Q Consensus 1009 ~~~T~~~~~~~l~~-~~~~~~ll~ils~s~EF~~i~vR~~E~~eL~~L~~~---~-p~p~~~~~~----~~~~Kv~iLLq 1079 (1665)
+|-|+..|...++. ..+...+|+++|.+++|..+.+|..|......+... . ..+.....+ -...|+.++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98619999998851899850499999749997211476356899999998777623567312256799999999999999
Q ss_pred HHHCCCCCC----CCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 987498889----98303-0199999929999999999999729999999999999998725679998633469999999
Q 000324 1080 AYISQLKLE----GLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (1665)
Q Consensus 1080 a~isr~~l~----~~~L~-~D~~~I~q~a~Rl~ral~ei~~~~~~~~~a~~~l~l~k~i~q~~W~~~~pL~Q~~~i~~~~ 1154 (1665)
.||+..++. .|... .|+..+.++|.|++.++.++|-..+|.. +-.|.+.|..++.+..-||.++|++++..
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~ell~L~~i~gvgr~r 156 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEELLELVRIRHIGRVR 156 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGGGHHHHTSTTCCHHH
T ss_pred HHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHCCCCHHHHHHHCCCCCCHHH
T ss_conf 98758999999999788907899999999999999999998746788----99999999826978888684578989999
Q ss_pred HHHHHHCCC-CCHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999991898-711001589478733313832268999998
Q 000324 1155 LMKLEKKDF-AWERYYDLSPQELGELIRFPKMGRTLHKFV 1193 (1665)
Q Consensus 1155 i~~le~~~~-~~~~l~~l~~~el~~ll~~~~~~~~i~~~~ 1193 (1665)
+++|...|+ +.+++..... +....+ .++.|+.+.+-+
T Consensus 157 Ar~L~~~Gi~t~~dl~~a~~-~~~~~~-~~g~g~ki~~~i 194 (198)
T d2p6ra2 157 ARKLYNAGIRNAEDIVRHRE-KVASLI-GRGIAERVVEGI 194 (198)
T ss_dssp HHHHHTTTCCSHHHHHHTHH-HHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHCCH-HHHHHH-HCCHHHHHHHHH
T ss_conf 99999959999999987257-507887-104689999986
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=3.5e-07 Score=63.78 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=56.2
Q ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 99999987349997999958627899999999870135887321124699332035575544999998742458998589
Q 000324 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (1665)
Q Consensus 1563 ~~~~i~~~l~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~ 1642 (1665)
.+..+......+.++||||+|+++|+.++..| ...+..+.++||+
T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L-----------------------------------~~~Gi~a~~~Hg~ 64 (174)
T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFL-----------------------------------VEHGIRARYLHHE 64 (174)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH-----------------------------------HHTTCCEEEECTT
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH-----------------------------------HHCCCCEEEEECC
T ss_conf 99999999865983899982303799999999-----------------------------------8659725898615
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999999995399608989
Q 000324 1643 LNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1643 l~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
|++.+|..+++.|++|+++||||
T Consensus 65 ~~~~eR~~~l~~F~~G~~~vLVa 87 (174)
T d1c4oa2 65 LDAFKRQALIRDLRLGHYDCLVG 87 (174)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 54188999999997798699996
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=98.42 E-value=6.5e-07 Score=61.92 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=43.1
Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 99873499979999586278999999998701358873211246993320355755449999987424589985899999
Q 000324 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (1665)
Q Consensus 1567 i~~~l~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~ 1646 (1665)
+......+.++||||+++..|+.++..| ...+..+.++||+|++.
T Consensus 24 i~~~~~~~~~~iif~~~~~~~~~~~~~l-----------------------------------~~~g~~~~~~hg~~~~~ 68 (181)
T d1t5la2 24 IRERVERNERTLVTTLTKKMAEDLTDYL-----------------------------------KEAGIKVAYLHSEIKTL 68 (181)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHH-----------------------------------HTTTCCEEEECSSCCHH
T ss_pred HHHHHHCCCEEEEEEEHHHHHHHHHHHH-----------------------------------HHCCCCEEEECCCCCHH
T ss_conf 9999962982899961034667888878-----------------------------------76794046741786388
Q ss_pred HHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999995399608989
Q 000324 1647 DQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1647 dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|..+++.|++|+++||||
T Consensus 69 eR~~~l~~Fr~g~~~vLVa 87 (181)
T d1t5la2 69 ERIEIIRDLRLGKYDVLVG 87 (181)
T ss_dssp HHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHHHHCCCCCEEEE
T ss_conf 9999999997899888976
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=4.9e-06 Score=55.66 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999988389909998248986099999999999984289999998997099999354878999999998731
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~ 574 (1665)
.+.++|.-.--.+..+ -+....||-|||+++.+|+.-.... +..+-+|+..--||..=++++...+
T Consensus 80 RhyDVQLiGgi~L~~G---~iaem~TGEGKTL~a~l~a~l~al~-----------g~~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG---NIAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp CCCHHHHHHHHHHHTT---SEEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHHH---HHEEECCCCCCHHHHHHHHHHHHHC-----------CCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 7730478999998765---5302068875103999999999966-----------9985697157300331245776799
Q ss_pred CCCCCEEEEEECCCCCCHH-HHCCCCEEEECHHHH--HHHHHHCC---CCCCCCCEEEEEEECCCCCC-C-CCCH
Q ss_conf 0389499999788863676-440364999272359--99983149---98644540089992531001-6-8804
Q 000324 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-D-NRGP 641 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~liIiDEvH~l~-d-~rg~ 641 (1665)
..+|++|+..+.+.....+ ..-.++|+++|..-+ |.+..+.. +........+.|+||++.+. | .|.|
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartp 220 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 220 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCCCCCEEEEECCHHHHHHCCCCC
T ss_conf 982987345655457777777760783550255554444114332586664568887899975346625346885
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=4.4e-06 Score=56.02 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=75.1
Q ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHHH
Q ss_conf 83898299996582679999999999741013224455568013999985210136410342107857993689997889
Q 000324 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (1665)
Q Consensus 730 ~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~dR 809 (1665)
+..+.++||++.|....+.++..|...+..... +++.....+-
T Consensus 31 ~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~v-------------------------------------LnAk~~~~Ea 73 (175)
T d1tf5a4 31 YMTGQPVLVGTVAVETSELISKLLKNKGIPHQV-------------------------------------LNAKNHEREA 73 (175)
T ss_dssp HHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE-------------------------------------ECSSCHHHHH
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEE-------------------------------------EHHHHHHHHH
T ss_conf 965998899968199999999999975997122-------------------------------------1022689988
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCC--------CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 9999997099977687430000245898--------62899963501379999754389988984312368999998228
Q 000324 810 QLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (1665)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVnlP--------~~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~ 881 (1665)
..+- .+...-.|.|||+.+++|.|+. .-.+||. | +-++ |..--.|..|||||.| ..|.
T Consensus 74 ~II~--~Ag~~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI~-t--~~~~-------s~Rid~Ql~GR~gRQG--dpGs 139 (175)
T d1tf5a4 74 QIIE--EAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVG-T--ERHE-------SRRIDNQLRGRSGRQG--DPGI 139 (175)
T ss_dssp HHHT--TTTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEE-S--SCCS-------SHHHHHHHHTTSSGGG--CCEE
T ss_pred HHHH--HCCCCCCEEEHHHHHHCCCCCCCHHHHHHCCCCEEEE-E--CCCC-------CHHHHHHHHCCHHHHC--CCCC
T ss_conf 8887--5137981664455887088756638898579858998-4--0485-------2667888842344207--8745
Q ss_pred EEEEECCCC
Q ss_conf 999908873
Q 000324 882 GIIITGHSE 890 (1665)
Q Consensus 882 ~iil~~~~~ 890 (1665)
...+++-++
T Consensus 140 ~~~~~sleD 148 (175)
T d1tf5a4 140 TQFYLSMED 148 (175)
T ss_dssp EEEEEETTS
T ss_pred CEEEEECCH
T ss_conf 189999087
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.1e-06 Score=57.13 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=42.2
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHH
Q ss_conf 49997999958627899999999870135887321124699332035575544999998742458998589999999999
Q 000324 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (1665)
Q Consensus 1572 ~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~dR~~v 1651 (1665)
....++||||++++.+..++..| ...+..+.++||+|+..+|..+
T Consensus 25 ~~~~k~iIF~~~~~~~~~l~~~L-----------------------------------~~~~~~~~~ihg~~~~~~r~~~ 69 (168)
T d1t5ia_ 25 LEFNQVVIFVKSVQRCIALAQLL-----------------------------------VEQNFPAIAIHRGMPQEERLSR 69 (168)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHH-----------------------------------HHTTCCEEEECTTSCHHHHHHH
T ss_pred CCCCEEEEEEEEEECCHHHHHHH-----------------------------------CCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89981999980344110133343-----------------------------------0124443211122210222211
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99995399608989
Q 000324 1652 SALFEAGKIKICYR 1665 (1665)
Q Consensus 1652 ~~~F~~G~i~VLVC 1665 (1665)
++.|++|.++||||
T Consensus 70 l~~F~~g~~~iLv~ 83 (168)
T d1t5ia_ 70 YQQFKDFQRRILVA 83 (168)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHCCCCCEEEEC
T ss_conf 22111222114412
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.27 E-value=4.3e-06 Score=56.09 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=54.3
Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 99873499979999586278999999998701358873211246993320355755449999987424589985899999
Q 000324 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (1665)
Q Consensus 1567 i~~~l~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~ 1646 (1665)
++.. .+..++||||+|+..|+.++..| ...+..+..+|++|+..
T Consensus 21 ll~~-~~~~k~iIF~~s~~~~~~l~~~L-----------------------------------~~~~~~~~~~~~~~~~~ 64 (162)
T d1fuka_ 21 LYDS-ISVTQAVIFCNTRRKVEELTTKL-----------------------------------RNDKFTVSAIYSDLPQQ 64 (162)
T ss_dssp HHHH-TTCSCEEEEESSHHHHHHHHHHH-----------------------------------HHTTCCEEEECTTSCHH
T ss_pred HHHH-CCCCCEEEEEEEECHHHHHHHHH-----------------------------------HHCCCEEEEECCCCCHH
T ss_conf 9984-89885899998870699999888-----------------------------------65495599951677523
Q ss_pred HHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999995399608989
Q 000324 1647 DQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1647 dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|..+++.|+.|.++||||
T Consensus 65 ~r~~~l~~f~~~~~~iLv~ 83 (162)
T d1fuka_ 65 ERDTIMKEFRSGSSRILIS 83 (162)
T ss_dssp HHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEC
T ss_conf 6778999876403645651
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=5e-06 Score=55.64 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=52.0
Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 99873499979999586278999999998701358873211246993320355755449999987424589985899999
Q 000324 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (1665)
Q Consensus 1567 i~~~l~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~ 1646 (1665)
++.. .+..++||||++++.|+.++..| ...+..+..+||+|+..
T Consensus 26 ll~~-~~~~k~iVF~~~~~~~~~l~~~L-----------------------------------~~~g~~~~~~h~~~~~~ 69 (171)
T d1s2ma2 26 LFSK-LQINQAIIFCNSTNRVELLAKKI-----------------------------------TDLGYSCYYSHARMKQQ 69 (171)
T ss_dssp HHHH-SCCSEEEEECSSHHHHHHHHHHH-----------------------------------HHHTCCEEEECTTSCHH
T ss_pred HHHH-CCCCCEEEEEEEEEHHHHHHHHH-----------------------------------HCCCCCCCCCCCCCCHH
T ss_conf 9984-89876599972241356767765-----------------------------------01334433343332114
Q ss_pred HHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999995399608989
Q 000324 1647 DQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1647 dR~~v~~~F~~G~i~VLVC 1665 (1665)
+|..++..|++|.+++|||
T Consensus 70 ~r~~~~~~f~~~~~~ilv~ 88 (171)
T d1s2ma2 70 ERNKVFHEFRQGKVRTLVC 88 (171)
T ss_dssp HHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHCCCCCCCCCCC
T ss_conf 5665532113686311012
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=7.3e-06 Score=54.45 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=26.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH-------HCCCCEEEEC
Q ss_conf 9999935487899999999873103894999997888636764-------4036499927
Q 000324 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTT 604 (1665)
Q Consensus 552 kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~T 604 (1665)
++|+-++++.-+...+..+... |+.+..++|+.+...+. ....+|+|+|
T Consensus 32 ~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT 87 (200)
T d1oywa3 32 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT 87 (200)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CEEEEEEEEHHHHHHHHHHCCC----CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8899982231167764432447----8535775388717778999988741343078740
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.1e-05 Score=53.08 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=48.8
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHH
Q ss_conf 49997999958627899999999870135887321124699332035575544999998742458998589999999999
Q 000324 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (1665)
Q Consensus 1572 ~~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~dR~~v 1651 (1665)
....++||||+++..|+.++..| ...+..+..+|++++..+|..+
T Consensus 32 ~~~~k~iiF~~~~~~~~~~~~~l-----------------------------------~~~~~~~~~~~~~~~~~~r~~~ 76 (168)
T d2j0sa2 32 LTITQAVIFCNTKRKVDWLTEKM-----------------------------------REANFTVSSMHGDMPQKERESI 76 (168)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHH-----------------------------------HHTTCCCEEECTTSCHHHHHHH
T ss_pred CCCCCEEEEEEEHHHHHHHHHHH-----------------------------------HHCCCCHHHHHHHHHHHHHHHH
T ss_conf 78776399960588878888776-----------------------------------6304431333112257899999
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99995399608989
Q 000324 1652 SALFEAGKIKICYR 1665 (1665)
Q Consensus 1652 ~~~F~~G~i~VLVC 1665 (1665)
++.|++|++++|||
T Consensus 77 ~~~fk~g~~~iLv~ 90 (168)
T d2j0sa2 77 MKEFRSGASRVLIS 90 (168)
T ss_dssp HHHHHHTSSCEEEE
T ss_pred HHHHHCCCCCEEEC
T ss_conf 99986388407741
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.05 E-value=4.2e-05 Score=49.06 Aligned_cols=127 Identities=20% Similarity=0.139 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89998999999987399919998789973899999999999985048998099998553999999999999986178895
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~ 1420 (1665)
.+.+.|...--.+.+| -+..+.||-|||+++.+|+.-.-.. +. .+-+|....-||..=...+. .+-..+|+
T Consensus 80 RhyDVQLiGgi~L~~G---~iaem~TGEGKTL~a~l~a~l~al~---g~--~vhvvTvNdyLA~RDae~m~-~iy~~lGl 150 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG---NIAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMG-KIFEFLGL 150 (273)
T ss_dssp CCCHHHHHHHHHHHTT---SEEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred EEEHHHHHHHHHHHHH---HHEEECCCCCCHHHHHHHHHHHHHC---CC--CCEEEECCCCCCCHHHHHHH-HHHHHCCC
T ss_conf 7730478999998765---5302068875103999999999966---99--85697157300331245776-79998298
Q ss_pred EEEEEECCCCCC-HHCCCCCCEEEECHHHH--HHHHHHHH---CCCCCCCCCEEEEECCCCC
Q ss_conf 899994887211-20027995999882568--99997200---0246787018986045312
Q 000324 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKW--DALSRRWK---QRKYVQQVSLFIIDELHLI 1476 (1665)
Q Consensus 1421 ~V~~ltG~~~~~-~~~l~~~~IIV~TPe~l--~~l~~~~~---~~~~l~~v~liIiDEaH~l 1476 (1665)
+|+....+.... .+..-.+||+.+|...+ +.+-.+.. .........+.||||+|.+
T Consensus 151 svg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsi 212 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 212 (273)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCCCCCEEEEECCHHH
T ss_conf 73456554577777777607835502555544441143325866645688878999753466
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.02 E-value=1.3e-05 Score=52.62 Aligned_cols=58 Identities=28% Similarity=0.376 Sum_probs=51.0
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
Q ss_conf 99979999586278999999998701358873211246993320355755449999987424589985899999999999
Q 000324 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (1665)
Q Consensus 1573 ~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~dR~~v~ 1652 (1665)
...++||||++++.|+.++..| ...+..+..+|++++..+|..++
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L-----------------------------------~~~g~~~~~~~~~~~~~~r~~~~ 71 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASML-----------------------------------RDIGFKAGAIHGDLSQSQREKVI 71 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHH-----------------------------------HHTTCCEEEECSSSCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHH-----------------------------------CCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9998999979448998887652-----------------------------------33432222333310011345666
Q ss_pred HHHHCCCCEEEEC
Q ss_conf 9995399608989
Q 000324 1653 ALFEAGKIKICYR 1665 (1665)
Q Consensus 1653 ~~F~~G~i~VLVC 1665 (1665)
+.|++|.+++|||
T Consensus 72 ~~f~~~~~~ilv~ 84 (155)
T d1hv8a2 72 RLFKQKKIRILIA 84 (155)
T ss_dssp HHHHTTSSSEEEE
T ss_pred HHHHCCCCEEEEE
T ss_conf 5541211125530
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=0.00015 Score=45.15 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=84.4
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 99335852189999999999999998838990999824898609999999999998428999999899709999935487
Q 000324 482 MPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (1665)
Q Consensus 482 lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~ka 561 (1665)
+..+....|+ -...+..|..++..++.+ ..+++.+|.|+|||.+.. .++..+..... ..+.+|++.+||-.
T Consensus 136 ~~~~~~~~~~-~~~~~~~Q~~A~~~al~~-~~~vI~G~pGTGKTt~i~-~~l~~l~~~~~------~~~~~I~l~ApTgk 206 (359)
T d1w36d1 136 LAQTLDKLFP-VSDEINWQKVAAAVALTR-RISVISGGPGTGKTTTVA-KLLAALIQMAD------GERCRIRLAAPTGK 206 (359)
T ss_dssp HHHHHHTTCC-CTTSCCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHH-HHHHHHHHTCS------SCCCCEEEEBSSHH
T ss_pred HHHHHHHHCC-CCCCCCHHHHHHHHHHCC-CEEEEECCCCCCCEEHHH-HHHHHHHHHHH------CCCCEEEEECCCHH
T ss_conf 9999997465-765663899999999708-859997689887521699-99999999875------26982898437599
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCH
Q ss_conf 89999999987310389499999788863676440364999272359999831499864454008999253100168804
Q 000324 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (1665)
Q Consensus 562 La~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~ 641 (1665)
-+..+.+.........+...... ......... -...+-.+++. ...+.. .......+++||||+-.+.. +
T Consensus 207 AA~~L~e~~~~~~~~~~~~~~~~-~~~~~~~~t--~~~ll~~~~~~--~~~~~~--~~~~l~~d~lIIDEaSmv~~---~ 276 (359)
T d1w36d1 207 AAARLTESLGKALRQLPLTDEQK-KRIPEDAST--LHRLLGAQPGS--QRLRHH--AGNPLHLDVLVVDEASMIDL---P 276 (359)
T ss_dssp HHHHHHHHHTHHHHHSSCCSCCC-CSCSCCCBT--TTSCC-------------C--TTSCCSCSEEEECSGGGCBH---H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH--HHHHHHHHHCC--HHHHHH--HHCCCCCCEEEEHHHHCCCH---H
T ss_conf 99999988877776458104455-420134557--89987631000--677775--43666541346533214489---9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 8999999999998511687009999333
Q 000324 642 VLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (1665)
.+. .+. ...+...++|++--.
T Consensus 277 l~~----~ll---~~~~~~~~lILvGD~ 297 (359)
T d1w36d1 277 MMS----RLI---DALPDHARVIFLGDR 297 (359)
T ss_dssp HHH----HHH---HTCCTTCEEEEEECT
T ss_pred HHH----HHH---HHHCCCCEEEEECCH
T ss_conf 999----999---872599989997772
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.80 E-value=4.8e-05 Score=48.64 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999988389909998248986099999999999984289999998997099999354878999999998731
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~ 574 (1665)
.||+-|.+++.. ...+++|.||.|||||.+.+.-+...+..... ...+|+++++++++|.++..++.+..
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-------~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHC---CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC-------CHHHEEEEECCHHHHHHHHHHHHHHC
T ss_conf 969899999819---99998999628843899999999999995699-------95578999686999999999999853
Q ss_pred C
Q ss_conf 0
Q 000324 575 Q 575 (1665)
Q Consensus 575 ~ 575 (1665)
+
T Consensus 71 ~ 71 (306)
T d1uaaa1 71 G 71 (306)
T ss_dssp C
T ss_pred C
T ss_conf 7
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=0.00014 Score=45.40 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98999899999998739991999878997389999999999998504899809999855399999999999998617889
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (1665)
Q Consensus 1340 ~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~ 1419 (1665)
...+..|.+++..++.+ .-++|..|.|+|||....- ++..+.......+.++++.+||-.-+...............
T Consensus 147 ~~~~~~Q~~A~~~al~~-~~~vI~G~pGTGKTt~i~~-~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~- 223 (359)
T d1w36d1 147 SDEINWQKVAAAVALTR-RISVISGGPGTGKTTTVAK-LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP- 223 (359)
T ss_dssp TTSCCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHH-HHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS-
T ss_pred CCCCCHHHHHHHHHHCC-CEEEEECCCCCCCEEHHHH-HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC-
T ss_conf 65663899999999708-8599976898875216999-99999998752698289843759999999988877776458-
Q ss_pred CEEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 58999948872112002799599988256899997200024678701898604531288886059999999999986238
Q 000324 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (1665)
Q Consensus 1420 ~~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (1665)
.... .......+...+. .+.-.+++. ...++ ........+++||||+-++.. ..|..+....+
T Consensus 224 ~~~~-~~~~~~~~~~t~~--~ll~~~~~~--~~~~~--~~~~~l~~d~lIIDEaSmv~~----------~l~~~ll~~~~ 286 (359)
T d1w36d1 224 LTDE-QKKRIPEDASTLH--RLLGAQPGS--QRLRH--HAGNPLHLDVLVVDEASMIDL----------PMMSRLIDALP 286 (359)
T ss_dssp CCSC-CCCSCSCCCBTTT--SCC---------------CTTSCCSCSEEEECSGGGCBH----------HHHHHHHHTCC
T ss_pred CHHH-HHHHHHHHHHHHH--HHHHHHHCC--HHHHH--HHHCCCCCCEEEEHHHHCCCH----------HHHHHHHHHHC
T ss_conf 1044-5542013455789--987631000--67777--543666541346533214489----------99999998725
Q ss_pred CCCEEEEECCC
Q ss_conf 99709999544
Q 000324 1500 NKIRIVALSTS 1510 (1665)
Q Consensus 1500 ~~~riI~lSAT 1510 (1665)
...++|++.-.
T Consensus 287 ~~~~lILvGD~ 297 (359)
T d1w36d1 287 DHARVIFLGDR 297 (359)
T ss_dssp TTCEEEEEECT
T ss_pred CCCEEEEECCH
T ss_conf 99989997772
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00027 Score=43.38 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH-------HCCCCEEEECHHHHHHHHHHCCCCCCCC
Q ss_conf 709999935487899999999873103894999997888636764-------4036499927235999983149986445
Q 000324 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQ 622 (1665)
Q Consensus 550 ~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~ 622 (1665)
+.++.||+|...-+.+.+..+.+.+. +.+|..++|.++..... ..+.+|+|||. +..... .+.
T Consensus 31 GgQvy~V~p~I~~~e~~~~~l~~~~p--~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEvGi---Dvp 100 (211)
T d2eyqa5 31 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETGI---DIP 100 (211)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGGS---CCT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCC--CEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEH-----HHHHCC---CCC
T ss_conf 99599997175212668888887477--33799997226888899999999829862688755-----344046---899
Q ss_pred CEEEEEEECCCCCC
Q ss_conf 40089992531001
Q 000324 623 LVKLLIIDEIHLLH 636 (1665)
Q Consensus 623 ~v~liIiDEvH~l~ 636 (1665)
+..++||..++.+.
T Consensus 101 nA~~iiI~~a~rfG 114 (211)
T d2eyqa5 101 TANTIIIERADHFG 114 (211)
T ss_dssp TEEEEEETTTTSSC
T ss_pred CCCEEEEECCHHCC
T ss_conf 87699871300033
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.53 E-value=0.00039 Score=42.23 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999988389909998248986099999999999984289999998997099999354878999999998731
Q 000324 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~ 574 (1665)
.|++=|.+++.. ...+++|.||.|||||.+++-.+.+.+..... ...+++++++++..+.++...+....
T Consensus 11 ~L~~eQ~~~v~~---~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~-------~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-------CHHHEEEEECCHHHHHHHHHHHHHHC
T ss_conf 678999999829---99998999529866899999999999980899-------87893757664989998999998621
Q ss_pred CCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHH-HHHHHH
Q ss_conf 0389499999788863676440364999272359-999831
Q 000324 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRK 614 (1665)
Q Consensus 575 ~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekl-d~l~r~ 614 (1665)
... .....|.|...| ..+.+.
T Consensus 81 ~~~-------------------~~~~~i~T~hs~~~~~l~~ 102 (318)
T d1pjra1 81 GGA-------------------AEDVWISTFHSMCVRILRR 102 (318)
T ss_dssp GGG-------------------GTTSEEEEHHHHHHHHHHH
T ss_pred CCC-------------------CCCCEEECHHHHHHHHHHH
T ss_conf 343-------------------3334054099999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.40 E-value=0.00042 Score=41.99 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 8999899999998739991999878997389999999999998504-89980999985539999999999999861
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~-~~~~~raivI~Pt~eLa~q~~~~~~~~f~ 1415 (1665)
.++|-|.+++.. ...+++|.++.|||||.....-+...+.... +.. +++++++++++++.....+.+.++
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~--~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHC---CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHH--HEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 969899999819---99998999628843899999999999995699955--789996869999999999998537
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.0035 Score=35.46 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=72.4
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCHHH
Q ss_conf 98389829999658267999999999974101322445556801399998521013641034210785799368999788
Q 000324 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (1665)
Q Consensus 729 ~~~~~~~vLIFv~sr~~~~~la~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~~Hagl~~~d 808 (1665)
.+..+.|+||.+.|....+.++..|...+.....+ +|.-...+
T Consensus 30 ~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vL-------------------------------------NAK~herE 72 (219)
T d1nkta4 30 RYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL-------------------------------------NAKYHEQE 72 (219)
T ss_dssp HHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE-------------------------------------CSSCHHHH
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHCC-------------------------------------CHHHHHHH
T ss_conf 99669988996175999999999998725343224-------------------------------------10468888
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCC--------------------------------------------------
Q ss_conf 999999970999776874300002458986--------------------------------------------------
Q 000324 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPA-------------------------------------------------- 838 (1665)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVnlP~-------------------------------------------------- 838 (1665)
-..|-+ +...-.|-|||+.+++|.|+.=
T Consensus 73 AeIIAq--AG~~GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 150 (219)
T d1nkta4 73 ATIIAV--AGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 150 (219)
T ss_dssp HHHHHT--TTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHH--CCCCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899996--466883796200047877646468601556777654146731287899999987778889988877777774
Q ss_pred -EEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC
Q ss_conf -289996350137999975438998898431236899999822899990887
Q 000324 839 -HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (1665)
Q Consensus 839 -~~vVI~~t~~yd~~~g~~~~ls~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (1665)
=.+-|.||.... |..-=.|-.|||||.| ..|....+.+-+
T Consensus 151 ~GGL~VIGTErHe---------SrRIDnQLRGRsGRQG--DPGsSrFflSLe 191 (219)
T d1nkta4 151 AGGLYVLGTERHE---------SRRIDNQLRGRSGRQG--DPGESRFYLSLG 191 (219)
T ss_dssp TTSEEEEECSCCS---------SHHHHHHHHHTSSGGG--CCEEEEEEEETT
T ss_pred CCCCEEEECCCCC---------CCCCCCCCCCCCCCCC--CCCCCEEEEECC
T ss_conf 4996798425566---------5555533026664568--975125677446
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.13 E-value=9.4e-05 Score=46.57 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=31.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 0999993548789999999987310389499999788863676
Q 000324 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (1665)
Q Consensus 551 ~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~ 593 (1665)
.++|+-+++|.-|.+++..+++. |+++..++|+.+....
T Consensus 37 gk~LVFcnSR~~aE~La~~L~~~----Gi~a~~~Hgglsq~~R 75 (299)
T d1a1va2 37 GRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSVI 75 (299)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCGGGS
T ss_pred CCEEEECCCHHHHHHHHHHHHHC----CCCEEEEECCCHHHHH
T ss_conf 98999879689999999999777----9878997589407778
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.13 E-value=0.0015 Score=38.02 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 98999899999998739991999878997389999999999998504-899809999855399999999999998617
Q 000324 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1340 ~~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~-~~~~~raivI~Pt~eLa~q~~~~~~~~f~~ 1416 (1665)
..+++-|.+++... ..+++|.++.|||||....--+...+.... +.. +++++++++..+..+...+...+..
T Consensus 10 ~~L~~eQ~~~v~~~---~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~--~il~lt~t~~aa~~~~~~~~~~~~~ 82 (318)
T d1pjra1 10 AHLNKEQQEAVRTT---EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPW--NILAITFTNKAAREMRERVQSLLGG 82 (318)
T ss_dssp TTSCHHHHHHHHCC---SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGG--GEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred HHCCHHHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHH--HEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 86789999998299---9998999529866899999999999980899878--9375766498999899999862134
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.07 E-value=0.00022 Score=43.92 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
Q ss_conf 99979999586278999999998701358873211246993320355755449999987424589985899999999999
Q 000324 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (1665)
Q Consensus 1573 ~~~~~IIFv~sr~~a~~la~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gV~~~H~~l~~~dR~~v~ 1652 (1665)
..+++||||+|+++|+.++..| ...+..+..+|++|+..+
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L-----------------------------------~~~G~~~~~~H~~~~~~~----- 73 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKL-----------------------------------VALGINAVAYYRGLDVSV----- 73 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHH-----------------------------------HHHTCEEEEECTTCCSCC-----
T ss_pred CCCCEEEEECCHHHHHHHHHHH-----------------------------------HCCCCCHHHHHCCCHHHH-----
T ss_conf 8998999909589999999998-----------------------------------352632033423530544-----
Q ss_pred HHHHCCCCEEEEC
Q ss_conf 9995399608989
Q 000324 1653 ALFEAGKIKICYR 1665 (1665)
Q Consensus 1653 ~~F~~G~i~VLVC 1665 (1665)
|++|..+||||
T Consensus 74 --~~~~~~~vlva 84 (138)
T d1jr6a_ 74 --IPTNGDVVVVA 84 (138)
T ss_dssp --CTTSSCEEEEE
T ss_pred --HHHHHCCEEEH
T ss_conf --32331121410
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.05 E-value=8.4e-05 Score=46.91 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=34.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-------HHCCCCEEEECHHHHHHHHHHCCCCCCCCCE
Q ss_conf 999993548789999999987310389499999788863676-------4403649992723599998314998644540
Q 000324 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLV 624 (1665)
Q Consensus 552 kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v 624 (1665)
++|+-++++.-+..++..+... ++|+.....+ ..++.+|+|||.-.-+++.|... ..+.+
T Consensus 27 ~~iif~~~~~~~~~l~~~l~~~----------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlD---ip~~v 93 (248)
T d1gkub2 27 GGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLD---LPERI 93 (248)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSC---CTTTC
T ss_pred CEEEEECCHHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCC---CCCCC
T ss_conf 9899989878999999999873----------4378999999999999982798599996666024651367---66540
Q ss_pred EEEEEEC
Q ss_conf 0899925
Q 000324 625 KLLIIDE 631 (1665)
Q Consensus 625 ~liIiDE 631 (1665)
++||.=.
T Consensus 94 ~~VI~~d 100 (248)
T d1gkub2 94 RFAVFVG 100 (248)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
T ss_conf 1899967
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.80 E-value=0.011 Score=31.96 Aligned_cols=124 Identities=21% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9099982489860999999999999842899999989970999993--54878999999998731038949999978886
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 512 ~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~ia--P~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
..+++++|||+|||....-.+.+.... +.++.+++ ..|.-+.+|.+.+.+.++ +.+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~-----------g~kV~lit~Dt~R~gA~eQL~~~a~~l~---v~~~------- 69 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGK-----------GRRPLLVAADTQRPAAREQLRLLGEKVG---VPVL------- 69 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT-----------TCCEEEEECCSSCHHHHHHHHHHHHHHT---CCEE-------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-----------CCCEEEEECCCCCCHHHHHHHHHHHHCC---CCCC-------
T ss_conf 689998999998899999999999977-----------9927999544346408888999998628---8631-------
Q ss_pred CCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 36764403649992723599998314998644540089992531001688048999999999998511687009999333
Q 000324 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (1665)
.+.+|+....+.+........+..++|+||=+-+.+.+ +..+..+........+.-.++.++|+
T Consensus 70 -----------~~~~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d-----~~~~~el~~~~~~~~~~~~llv~~a~ 133 (207)
T d1ls1a2 70 -----------EVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQID-----EPLMGELARLKEVLGPDEVLLVLDAM 133 (207)
T ss_dssp -----------ECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHH-----HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf -----------11244203678888988876336764033454420000-----36688999998631873699984345
Q ss_pred CCC
Q ss_conf 789
Q 000324 670 LPN 672 (1665)
Q Consensus 670 l~n 672 (1665)
.+.
T Consensus 134 ~~~ 136 (207)
T d1ls1a2 134 TGQ 136 (207)
T ss_dssp GTH
T ss_pred CCH
T ss_conf 561
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0094 Score=32.39 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHH---HCCC---CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999999999998---8389---9099982489860999999999999842899999989970999993548789999999
Q 000324 496 LNRVQSRVYKSA---LSSA---DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (1665)
Q Consensus 496 l~~iQ~~~i~~~---l~~~---~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~ 569 (1665)
++|+|..++..+ +..+ ..+|+++|.|+|||..+.. +++.+...... + .+..-.++ -+. .
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~-~a~~l~~~~~~-~------~~~~~~~~---~~~----~ 67 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLLCQQPQ-G------HKSCGHCR---GCQ----L 67 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHTCSSCB-T------TBCCSCSH---HHH----H
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH-HHHHCCCCCCC-C------CCCCCCCC---HHH----H
T ss_conf 87121999999999998599673798889998759999999-99821010123-2------12233420---155----6
Q ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98731038949999978886367644036499927235999983149986445400899925310016880489999999
Q 000324 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (1665)
Q Consensus 570 ~~~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r 649 (1665)
+.. .....+..+..+... ..+-+ +....+.............+++|+||+|.+... ....
T Consensus 68 i~~---~~~~~~~~~~~~~~~-------~~i~~---~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~-------a~n~ 127 (207)
T d1a5ta2 68 MQA---GTHPDYYTLAPEKGK-------NTLGV---DAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------AANA 127 (207)
T ss_dssp HHH---TCCTTEEEECCCTTC-------SSBCH---HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------HHHH
T ss_pred HHH---CCCCCCCHHHHHHCC-------CCCCC---CHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHH-------HHHH
T ss_conf 543---034311012343134-------53332---114677653211003576404773134420000-------1499
Q ss_pred HHHHHHHCCCCEEEEEECCCC
Q ss_conf 999985116870099993337
Q 000324 650 TVRQIETTKEHIRLVGLSATL 670 (1665)
Q Consensus 650 ~~~~~~~~~~~~riv~lSATl 670 (1665)
+++.++..+..+.+++.+-.+
T Consensus 128 Llk~lEep~~~~~fIl~t~~~ 148 (207)
T d1a5ta2 128 LLKTLEEPPAETWFFLATREP 148 (207)
T ss_dssp HHHHHTSCCTTEEEEEEESCG
T ss_pred HHHHHHHHCCCCEEEEEECCH
T ss_conf 999998501111045530686
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.73 E-value=0.0034 Score=35.51 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=44.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--------HHH-------HCCCCEEEECHHHHHHHHHH
Q ss_conf 709999935487899999999873103894999997888636--------764-------40364999272359999831
Q 000324 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT--------RQQ-------IEETQIIVTTPEKWDIITRK 614 (1665)
Q Consensus 550 ~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~--------~~~-------~~~~~IiV~TPekld~l~r~ 614 (1665)
+.++++.+.++.-+..+++.+.+. ++++..+.|..... .+. .+..+|+|+|- +...
T Consensus 161 ~~k~iiF~~~~~~~~~~~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~-----~~~~ 231 (286)
T d1wp9a2 161 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 231 (286)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCCEEEECC-----CEEC
T ss_conf 984899967188679999999976----9964886056643342010228899999998769982999714-----4020
Q ss_pred CCCCCCCCCEEEEEEECC
Q ss_conf 499864454008999253
Q 000324 615 SGDRTYTQLVKLLIIDEI 632 (1665)
Q Consensus 615 ~~~~~~l~~v~liIiDEv 632 (1665)
+. .+..+++||.=..
T Consensus 232 Gl---d~~~~~~Vi~~d~ 246 (286)
T d1wp9a2 232 GL---DVPEVDLVVFYEP 246 (286)
T ss_dssp GG---GSTTCCEEEESSC
T ss_pred CC---CCCCCCEEEEECC
T ss_conf 36---6888998999589
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.016 Score=30.79 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=66.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 099982489860999999999999842899999989970999993--548789999999987310389499999788863
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 513 nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~ia--P~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
.+++++|||+|||....-.+.+ +... +.++.+++ ..|.=+.+|.+.+.+.+ ++.+..
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~-~~~~----------g~kV~lit~Dt~R~gA~eQL~~~a~~l---~v~~~~------- 69 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQ-FEQQ----------GKSVMLAAGDTFRAAAVEQLQVWGQRN---NIPVIA------- 69 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HHTT----------TCCEEEECCCTTCHHHHHHHHHHHHHT---TCCEEC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHC----------CCCEEEEECCCCCCCCHHHHHHHHHHC---CCCCCC-------
T ss_conf 9999899999989999999999-9977----------994799823213666120455543433---886211-------
Q ss_pred CHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC------CCCEEEE
Q ss_conf 6764403649992723599998314998644540089992531001688048999999999998511------6870099
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT------KEHIRLV 664 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~------~~~~riv 664 (1665)
+-+|+-+..+.+........+..++|+||=+-+.+ .-+..+..+....+.. .+.-.++
T Consensus 70 -----------~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~-----~d~~~~~el~~l~~~~~~~~~~~p~~~~L 133 (211)
T d2qy9a2 70 -----------QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQ-----NKSHLMEELKKIVRVMKKLDVEAPHEVML 133 (211)
T ss_dssp -----------CSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGG-----GHHHHHHHHHHHHHHHTTTCTTCCSEEEE
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf -----------35687799999999999987699889965688763-----20778999999999985304668600122
Q ss_pred EECCCCCC--HHHHHHHHH
Q ss_conf 99333789--688999970
Q 000324 665 GLSATLPN--YEDVALFLR 681 (1665)
Q Consensus 665 ~lSATl~n--~~dva~~l~ 681 (1665)
.++|+... ..++..+..
T Consensus 134 Vl~a~~~~~~~~~~~~~~~ 152 (211)
T d2qy9a2 134 TIDASTGQNAVSQAKLFHE 152 (211)
T ss_dssp EEEGGGTHHHHHHHHHHHH
T ss_pred EHHCCCCCCHHHHHHHHHH
T ss_conf 0012357633778764421
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.42 E-value=0.021 Score=29.95 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=62.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 09998248986099999999999984289999998997099999354878999999998731038949999978886367
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
.+++++|||+|||....-.+.+...++ .+.-++-+=..|.=+.+|.+.+.+.+ ++.+.....
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~~---------~kV~lit~Dt~R~gA~eQL~~~a~~l---~i~~~~~~~------ 74 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDEG---------KSVVLAAADTFRAAAIEQLKIWGERV---GATVISHSE------ 74 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT---------CCEEEEEECTTCHHHHHHHHHHHHHH---TCEEECCST------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---------CCEEEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCC------
T ss_conf 999989999988999999999999779---------90699960133420467888776432---764103677------
Q ss_pred HHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEEEECCC
Q ss_conf 64403649992723599998314998644540089992531001688048999999999998511---687009999333
Q 000324 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT---KEHIRLVGLSAT 669 (1665)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~---~~~~riv~lSAT 669 (1665)
++-+..+.+........+..++|+||=+-+.+.+ ..+-.-+..+....... .+.-.++.++|+
T Consensus 75 ------------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d--~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~ 140 (213)
T d1vmaa2 75 ------------GADPAAVAFDAVAHALARNKDVVIIDTAGRLHTK--KNLMEELRKVHRVVKKKIPDAPHETLLVIDAT 140 (213)
T ss_dssp ------------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCH--HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG
T ss_pred ------------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf ------------7768998788789998769998998245533016--88889988887664202566650257862123
Q ss_pred CCC
Q ss_conf 789
Q 000324 670 LPN 672 (1665)
Q Consensus 670 l~n 672 (1665)
...
T Consensus 141 ~~~ 143 (213)
T d1vmaa2 141 TGQ 143 (213)
T ss_dssp GHH
T ss_pred CCC
T ss_conf 484
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.35 E-value=0.00079 Score=40.01 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=17.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 899858999999999999995399608989
Q 000324 1636 VGYLHEGLNKTDQEVVSALFEAGKIKICYR 1665 (1665)
Q Consensus 1636 V~~~H~~l~~~dR~~v~~~F~~G~i~VLVC 1665 (1665)
+..+||+++..+|..+++.|++|+++||||
T Consensus 115 ~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~ 144 (200)
T d2fwra1 115 IPAITHRTSREEREEILEGFRTGRFRAIVS 144 (200)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBC
T ss_pred CCEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 552557999999999998863487035430
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.017 Score=30.65 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHC----CC-C-CEEEECCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 899989999999873----99-9-19998789973899999999999985-04899809999855399999999999998
Q 000324 1341 HFNPIQTQVFTVLYN----TD-D-NVLVAAPTGSGKTICSEFAILRNHQK-ASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~----~~-d-nvii~apTGSGKTl~~~lail~~l~~-~~~~~~~raivI~Pt~eLa~q~~~~~~~~ 1413 (1665)
.++|||..++..+.. ++ . .+++..|.|+|||.++..-+ +.+.. ..... ...-.++. + ..+.
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a-~~l~~~~~~~~--~~~~~~~~---~----~~i~-- 69 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS-RYLLCQQPQGH--KSCGHCRG---C----QLMQ-- 69 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH-HHHTCSSCBTT--BCCSCSHH---H----HHHH--
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH-HHCCCCCCCCC--CCCCCCCH---H----HHHH--
T ss_conf 98712199999999999859967379888999875999999999-82101012321--22334201---5----5654--
Q ss_pred HCCCCCCEEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 61788958999948872112002799599988256899997200024678701898604531288886059999999999
Q 000324 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (1665)
Q Consensus 1414 f~~~~~~~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (1665)
......+..+..+... ..+ ..+....+.............+++|+||+|.+... ....+..
T Consensus 70 --~~~~~~~~~~~~~~~~-------~~i---~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~-------a~n~Llk 130 (207)
T d1a5ta2 70 --AGTHPDYYTLAPEKGK-------NTL---GVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------AANALLK 130 (207)
T ss_dssp --HTCCTTEEEECCCTTC-------SSB---CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------HHHHHHH
T ss_pred --HCCCCCCCHHHHHHCC-------CCC---CCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHH-------HHHHHHH
T ss_conf --3034311012343134-------533---32114677653211003576404773134420000-------1499999
Q ss_pred HHHHCCCCCEEEEECCCC
Q ss_conf 986238997099995448
Q 000324 1494 IASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1494 i~~~~~~~~riI~lSATl 1511 (1665)
+....+..+.+|+.+..+
T Consensus 131 ~lEep~~~~~fIl~t~~~ 148 (207)
T d1a5ta2 131 TLEEPPAETWFFLATREP 148 (207)
T ss_dssp HHTSCCTTEEEEEEESCG
T ss_pred HHHHHCCCCEEEEEECCH
T ss_conf 998501111045530686
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.02 E-value=0.028 Score=29.06 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 99999999999988
Q 000324 495 QLNRVQSRVYKSAL 508 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l 508 (1665)
.|++-|.+.+..++
T Consensus 9 ~ls~~Q~~~Y~~~~ 22 (244)
T d1z5za1 9 NLTPEQAAMYKAEV 22 (244)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 98999999999999
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0005 Score=41.43 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=44.2
Q ss_pred CCEEEEECCCHHH--------HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH-------HCCCCEEEECHHHHHHHHHH
Q ss_conf 7099999354878--------99999999873103894999997888636764-------40364999272359999831
Q 000324 550 NYKIVYVAPMKAL--------VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRK 614 (1665)
Q Consensus 550 ~~kii~iaP~kaL--------a~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~-------~~~~~IiV~TPekld~l~r~ 614 (1665)
+.++.||+|+.+= +.+.+..+.+.+ ..+.+++.++|.++...+. ..+.+|+|||. +...
T Consensus 29 g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~-~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt-----ViE~ 102 (206)
T d1gm5a4 29 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV-FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VIEV 102 (206)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSC-C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CCCS
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEH-----HHHC
T ss_conf 998899975144553211013678999999850-8997288986036599999999999779878999702-----4310
Q ss_pred CCCCCCCCCEEEEEEECCCCCC
Q ss_conf 4998644540089992531001
Q 000324 615 SGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 615 ~~~~~~l~~v~liIiDEvH~l~ 636 (1665)
.. .+.++.++|+..++...
T Consensus 103 GI---Dip~a~~iii~~a~~fg 121 (206)
T d1gm5a4 103 GI---DVPRANVMVIENPERFG 121 (206)
T ss_dssp CS---CCTTCCEEEBCSCSSSC
T ss_pred CC---CCCCCCEEEEECCCCCC
T ss_conf 45---52678489998048863
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.55 E-value=0.05 Score=27.26 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 99099982489860999999999999842899999989970999993--5487899999999873103894999997888
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~ia--P~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~ 588 (1665)
...+++++|||+|||....-...+ +... +.++.+++ ..|+=+.||.+.|.+.++ +.+....
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~-~~~~----------g~kV~lit~Dt~R~gA~eQL~~~a~~l~---i~~~~~~--- 68 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY-YQNL----------GKKVMFCAGDTFRAAGGTQLSEWGKRLS---IPVIQGP--- 68 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH-HHTT----------TCCEEEECCCCSSTTHHHHHHHHHHHHT---CCEECCC---
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHHC----------CCCEEEEEECCCCCCCHHHHHHCCCCCC---CEEEECC---
T ss_conf 779999899999889999999999-9977----------9907999813666540266764054568---2389616---
Q ss_pred CCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH---HHCCCCEEEEE
Q ss_conf 636764403649992723599998314998644540089992531001688048999999999998---51168700999
Q 000324 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI---ETTKEHIRLVG 665 (1665)
Q Consensus 589 ~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~---~~~~~~~riv~ 665 (1665)
++.-...+.+........+..++|+||=+-+.+.+. .+..-+..+.+.. ....+.-.++.
T Consensus 69 ---------------~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~--~l~~el~~~~~~~~~~~~~~p~~~~LV 131 (207)
T d1okkd2 69 ---------------EGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKH--NLMEELKKVKRAIAKADPEEPKEVWLV 131 (207)
T ss_dssp ---------------TTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCH--HHHHHHHHHHHHHHHHCTTCCSEEEEE
T ss_pred ---------------CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHH--HHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf ---------------774278899998999998799999717522231127--788887777777653256787359999
Q ss_pred ECCCCCC--HHHHHHHHH
Q ss_conf 9333789--688999970
Q 000324 666 LSATLPN--YEDVALFLR 681 (1665)
Q Consensus 666 lSATl~n--~~dva~~l~ 681 (1665)
++||... ..++..+..
T Consensus 132 l~a~~~~~~~~~~~~~~~ 149 (207)
T d1okkd2 132 LDAVTGQNGLEQAKKFHE 149 (207)
T ss_dssp EETTBCTHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHH
T ss_conf 620047167899997502
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.40 E-value=0.055 Score=26.92 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC--CHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 90999824898609999999999998428999999899709999935--4878999999998731038949999978886
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 512 ~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP--~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
..+++++|||+|||....-.+.+ +... +.++.+|+- .|.=+.++.+.|.+.++ +.+..
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~-~~~~----------g~kV~lit~Dt~R~ga~eQL~~~a~~l~---v~~~~------ 72 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYF-YKKK----------GFKVGLVGADVYRPAALEQLQQLGQQIG---VPVYG------ 72 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHH-HHHT----------TCCEEEEECCCSSHHHHHHHHHHHHHHT---CCEEC------
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHHC----------CCCEEEEEEECCCCCHHHHHHHHCCCCC---CCEEE------
T ss_conf 89999899999989999999999-9977----------9936999720235515678987401468---42230------
Q ss_pred CCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 36764403649992723599998314998644540089992531001688048999999999998511687009999333
Q 000324 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (1665)
+.+++.+....++..........++|+||=+-+...+. ....+..+........+.-.++.++|+
T Consensus 73 ------------~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~---~~~~~~el~~~~~~~~~~~~~LVl~a~ 137 (211)
T d1j8yf2 73 ------------EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGE---EAALLEEMKNIYEAIKPDEVTLVIDAS 137 (211)
T ss_dssp ------------CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTC---HHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred ------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH---HHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf ------------24410244789999987402677369985377676313---667899999998625976689998435
Q ss_pred CC
Q ss_conf 78
Q 000324 670 LP 671 (1665)
Q Consensus 670 l~ 671 (1665)
..
T Consensus 138 ~~ 139 (211)
T d1j8yf2 138 IG 139 (211)
T ss_dssp GG
T ss_pred CC
T ss_conf 68
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.08 Score=25.80 Aligned_cols=106 Identities=18% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 99099982489860999999999999842899999989970999993548789999999987310389499999788863
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
...+|+.+|.|+|||.++- ++...+. ...+++.+..-. .. +.|
T Consensus 45 ~~~iLL~GppGtGKT~la~-~iA~~~~-------------~~~~~i~~~~l~------------~~-------~~g---- 87 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAK-AIAGEAK-------------VPFFTISGSDFV------------EM-------FVG---- 87 (256)
T ss_dssp CCEEEEECCTTSCHHHHHH-HHHHHHT-------------CCEEEECSCSST------------TS-------CCC----
T ss_pred CCEEEEECCCCCCCCHHHH-HHHHHCC-------------CCEEEEEHHHHH------------HC-------CHH----
T ss_conf 8867866899888228999-9999829-------------987998869942------------60-------010----
Q ss_pred CHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 67644036499927235999983149986445400899925310016880-------48999999999998511687009
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRL 663 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~ri 663 (1665)
.|+.++..+...... ..-..|++||+|.+...|+ +....++..++..+.......++
T Consensus 88 ------------~~~~~l~~~f~~A~~----~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v 151 (256)
T d1lv7a_ 88 ------------VGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (256)
T ss_dssp ------------CCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------HHHHHHHHHHHHHHH----CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf ------------789999999999997----5998999977566575678988887489999999999995387777998
Q ss_pred EEECCC
Q ss_conf 999333
Q 000324 664 VGLSAT 669 (1665)
Q Consensus 664 v~lSAT 669 (1665)
+.+.+|
T Consensus 152 ~vIatT 157 (256)
T d1lv7a_ 152 IVIAAT 157 (256)
T ss_dssp EEEEEE
T ss_pred EEEEEC
T ss_conf 999807
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.76 E-value=0.022 Score=29.80 Aligned_cols=58 Identities=17% Similarity=0.379 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 9999999999999988389909998248986099999999999984289999998997099999354878
Q 000324 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (1665)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaL 562 (1665)
.....+-+...+..+.....|+++++|||||||... -+++..+ . ...+++.|--..+|
T Consensus 148 ~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i----~-------~~~rivtiEd~~El 205 (323)
T d1g6oa_ 148 LLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFI----P-------KEERIISIEDTEEI 205 (323)
T ss_dssp TCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGS----C-------TTCCEEEEESSCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHHHHC----C-------CCCCEEECCCHHHH
T ss_conf 466699999999999983788899940356625789-9986530----1-------45623311322655
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=94.70 E-value=0.086 Score=25.58 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHH----HCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 999999999998----8389909998248986099999999999984289999998997099999354878999999998
Q 000324 496 LNRVQSRVYKSA----LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 496 l~~iQ~~~i~~~----l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
|..=|-+++..+ -.+....++.+-||||||++.. .+++.. +..+++|+|...+|.+.++.+.
T Consensus 12 p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-------------~rp~LVVt~n~~~A~qL~~dL~ 77 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-------------NKPTLVIAHNKTLAGQLYSELK 77 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-------------TCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH-HHHHHH-------------CCCEEEEECCHHHHHHHHHHHH
T ss_conf 99988899999999986599858996778748999999-999973-------------9998999489999999999999
Q ss_pred HHHCC
Q ss_conf 73103
Q 000324 572 NRLQM 576 (1665)
Q Consensus 572 ~~~~~ 576 (1665)
.++..
T Consensus 78 ~~l~~ 82 (413)
T d1t5la1 78 EFFPH 82 (413)
T ss_dssp HHCTT
T ss_pred HHCCC
T ss_conf 87487
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.016 Score=30.76 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=18.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 9099982489860999999999999
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 512 ~nilv~APTGsGKT~va~l~il~~l 536 (1665)
.++++.+|.|+|||.++ ..+++.+
T Consensus 34 ~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp CCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 85998899999889999-9999762
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=94.41 E-value=0.031 Score=28.70 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=39.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH---HCCCCEEEECH
Q ss_conf 09999935487899999999873103894999997888636764---40364999272
Q 000324 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTP 605 (1665)
Q Consensus 551 ~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~~~---~~~~~IiV~TP 605 (1665)
.++++.+|+..-+.+++..+.+. |.+|..++|.......+ ....+|||+|.
T Consensus 37 g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 37 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHC----CCEEEEECCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 98999949999999999999866----9809997686757677665157767899700
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=94.07 E-value=0.12 Score=24.65 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHH----CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 89998999999987----39991999878997389999999999998504899809999855399999999999998617
Q 000324 1341 HFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~----~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~ 1416 (1665)
.|.--|-+++..+. .+..+.++..-||||||++..- ++... +. .+|||+|+..+|.|.+.+++..|+.
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~-l~~~~-----~r--p~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISN-VIAQV-----NK--PTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHH-HHHHH-----TC--CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH-HHHHH-----CC--CEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 9999888999999999865998589967787489999999-99973-----99--9899948999999999999987487
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.13 Score=24.37 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=48.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 9909998248986099999999999984289999-99899709999935487899999999873103
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g-~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~ 576 (1665)
+.++||.|.-|||||.+...-+++.+..+..... .-....-.|++|+=|+.-|.|+..++...++.
T Consensus 16 ~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L~~ 82 (485)
T d1w36b1 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (485)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 9996899718448899999999999861754322347998252867641799999999999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.13 Score=24.25 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=57.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 09998248986099999999999984289999998997099999354878999999998731038949999978886367
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (1665)
Q Consensus 513 nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~~ 592 (1665)
++|+.+|.|+|||..+. .+.+.+.......+ . ...+. ..+..+ .. .....+.++.+......
T Consensus 36 ~~Ll~Gp~G~GKtt~a~-~~~~~l~~~~~~~~-----~--~~~~~---~~~~~i----~~---~~~~~~~~~~~~~~~~i 97 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIAR-LLAKGLNCETGITA-----T--PCGVC---DNCREI----EQ---GRFVDLIEIDAASRTKV 97 (239)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHHHCTTCSCS-----S--CCSCS---HHHHHH----HH---TCCTTEEEEETTCSSSH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHCCCCCCCC-----C--CCCCC---HHHHHH----HC---CCCCEEEEECCHHCCCH
T ss_conf 59888899875899999-99998468556666-----7--55542---479999----74---79870799611200789
Q ss_pred HHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 64403649992723599998314998644540089992531001688048999999999998511687009999333
Q 000324 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (1665)
+....+.............+++||||+|.|... ....+++.++..+...++++.+--
T Consensus 98 -------------~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-------~q~~Llk~lE~~~~~~~~il~tn~ 154 (239)
T d1njfa_ 98 -------------EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------SFNALLKTLEEPPEHVKFLLATTD 154 (239)
T ss_dssp -------------HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------HHHHHHHHHHSCCTTEEEEEEESC
T ss_pred -------------HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH-------HHHHHHHHHHCCCCCEEEEEECCC
T ss_conf -------------999999999974652599879999781108999-------999999998568988699997388
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.13 Score=24.19 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=21.5
Q ss_pred HHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHH
Q ss_conf 99999988389--909998248986099999999
Q 000324 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAVLTI 532 (1665)
Q Consensus 501 ~~~i~~~l~~~--~nilv~APTGsGKT~va~l~i 532 (1665)
.+.+..++..+ .++|+.+|.|+|||.++.+.+
T Consensus 24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 9999999986998749998899987054699999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.41 E-value=0.15 Score=23.86 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCCE-EEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCH
Q ss_conf 9919-9987899738999999999999850489980999985--539999999999999861788958999948872112
Q 000324 1357 DDNV-LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (1665)
Q Consensus 1357 ~dnv-ii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~--Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~ 1433 (1665)
+.++ ++..|||+|||....--.. ++.. .+. ++.+++ ..|.-+.++.+.|.+.++ +.+..
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~-~~~~--~g~--kV~lit~Dt~R~gA~eQL~~~a~~l~----v~~~~--------- 70 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLAL-YYKG--KGR--RPLLVAADTQRPAAREQLRLLGEKVG----VPVLE--------- 70 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH-HHHH--TTC--CEEEEECCSSCHHHHHHHHHHHHHHT----CCEEE---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-HHHH--CCC--CEEEEECCCCCCHHHHHHHHHHHHCC----CCCCC---------
T ss_conf 986899989999988999999999-9997--799--27999544346408888999998628----86311---------
Q ss_pred HCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 00279959998825689999720002467870189860453128888605999999999998623899709999544899
Q 000324 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
+.+|+......+........+..+++++|=+-+...+. ..+..+..+....+....++.++|+...
T Consensus 71 ---------~~~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~-----~~~~el~~~~~~~~~~~~llv~~a~~~~ 136 (207)
T d1ls1a2 71 ---------VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDE-----PLMGELARLKEVLGPDEVLLVLDAMTGQ 136 (207)
T ss_dssp ---------CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH-----HHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH-----HHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf ---------12442036788889888763367640334544200003-----6688999998631873699984345561
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.15 Score=23.81 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=53.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 99099982489860999999999999842899999989970999993548789999999987310389499999788863
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~ 590 (1665)
...+|+.+|.|+|||..+- ++.+.+ +...+++.+.. |.. + ..|
T Consensus 42 ~~giLl~GppGtGKT~la~-aia~~~-------------~~~~~~i~~~~-l~~-------~---~~g------------ 84 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLAR-AVAGEA-------------RVPFITASGSD-FVE-------M---FVG------------ 84 (247)
T ss_dssp CSEEEEECCTTSSHHHHHH-HHHHHT-------------TCCEEEEEHHH-HHH-------S---CTT------------
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHC-------------CCCEEEEEHHH-HHH-------C---CCC------------
T ss_conf 8648876689888359999-999873-------------99779978699-646-------2---453------------
Q ss_pred CHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 67644036499927235999983149986445400899925310016880-------48999999999998511687009
Q 000324 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRL 663 (1665)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~ri 663 (1665)
-|..++..+....... .-..|+|||+|.+...|+ .....+++.++..+.......++
T Consensus 85 ------------~~~~~l~~~f~~a~~~----~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v 148 (247)
T d1ixza_ 85 ------------VGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 148 (247)
T ss_dssp ------------HHHHHHHHHHHHHTTS----SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred ------------HHHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf ------------8999999999999976----997999977366474678998887589999999999996387778998
Q ss_pred EEECCC
Q ss_conf 999333
Q 000324 664 VGLSAT 669 (1665)
Q Consensus 664 v~lSAT 669 (1665)
+.+.+|
T Consensus 149 ivi~tT 154 (247)
T d1ixza_ 149 VVMAAT 154 (247)
T ss_dssp EEEEEE
T ss_pred EEEEEC
T ss_conf 999807
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.16 Score=23.71 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=63.6
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCCCC
Q ss_conf 19998789973899999999999985048998099998553999999999999986178895899994887211200279
Q 000324 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (1665)
Q Consensus 1359 nvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l~~ 1438 (1665)
-++++.|||+|||....=-..+ +.. .+.++..+-+=..|.=+.++.+.|.+.++ +.+. ....
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~-~~~--~~~kV~lit~Dt~R~gA~eQL~~~a~~l~----i~~~--~~~~--------- 74 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKM-FVD--EGKSVVLAAADTFRAAAIEQLKIWGERVG----ATVI--SHSE--------- 74 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHT----CEEE--CCST---------
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH--CCCCEEEEEECCCCCCHHHHHHHHHHHCC----CCCC--CCCC---------
T ss_conf 9999899999889999999999-997--79906999601334204678887764327----6410--3677---------
Q ss_pred CCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC------CCCEEEEECCCCC
Q ss_conf 9599988256899997200024678701898604531288886059999999999986238------9970999954489
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE------NKIRIVALSTSLA 1512 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~------~~~riI~lSATl~ 1512 (1665)
++-+......+......+..+++++|=+-+...+ +..+..+..+..... ..-.++.++|+..
T Consensus 75 -------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d-----~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 142 (213)
T d1vmaa2 75 -------GADPAAVAFDAVAHALARNKDVVIIDTAGRLHTK-----KNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 142 (213)
T ss_dssp -------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCH-----HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred -------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH-----HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf -------7768998788789998769998998245533016-----8888998888766420256665025786212348
Q ss_pred C
Q ss_conf 9
Q 000324 1513 N 1513 (1665)
Q Consensus 1513 n 1513 (1665)
.
T Consensus 143 ~ 143 (213)
T d1vmaa2 143 Q 143 (213)
T ss_dssp H
T ss_pred C
T ss_conf 4
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.44 E-value=0.036 Score=28.29 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99099982489860999999999999
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l 536 (1665)
..|+|+.+|||+|||++|- .+.+.+
T Consensus 49 ksNILliGPTGvGKTlLAr-~LAk~l 73 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR-RLAKLA 73 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH-HHHHHT
T ss_pred CCCEEEECCCCCCHHHHHH-HHHHHH
T ss_conf 5647998999988999999-999873
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.31 E-value=0.21 Score=22.83 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=64.7
Q ss_pred HHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHH-HHHHHHHHHHHHHCC
Q ss_conf 999999988389--90999824898609999999999998428999999899709999935487-899999999873103
Q 000324 500 QSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQM 576 (1665)
Q Consensus 500 Q~~~i~~~l~~~--~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~ka-La~q~~~~~~~~~~~ 576 (1665)
|-+.+..+++.+ .++++++|.|+|||..+.... +.+..... ..+-++++.|-.. .-.+..+
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~~-------~h~D~~~i~~~~~~I~Id~IR-------- 65 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFPP-------KASDVLEIDPEGENIGIDDIR-------- 65 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSCC-------CTTTEEEECCSSSCBCHHHHH--------
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-HHHHCCCC-------CCCCEEEEECCCCCCCHHHHH--------
T ss_conf 78999999966998559988989988899999999-99843456-------799889980776789989999--------
Q ss_pred CCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89499999788863676440364999272359999831499864454008999253100168804899999999999851
Q 000324 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (1665)
Q Consensus 577 ~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~ 656 (1665)
.+.+...........+++|+||||.|... .-..+++.++.
T Consensus 66 ---------------------------------~i~~~~~~~~~~~~~KviIId~ad~l~~~-------aqNaLLK~LEE 105 (198)
T d2gnoa2 66 ---------------------------------TIKDFLNYSPELYTRKYVIVHDCERMTQQ-------AANAFLKALEE 105 (198)
T ss_dssp ---------------------------------HHHHHHTSCCSSSSSEEEEETTGGGBCHH-------HHHHTHHHHHS
T ss_pred ---------------------------------HHHHHHHHCCCCCCCEEEEEECCCCCCHH-------HHHHHHHHHHC
T ss_conf ---------------------------------99999961754589879999473103666-------66478887737
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 16870099993337
Q 000324 657 TKEHIRLVGLSATL 670 (1665)
Q Consensus 657 ~~~~~riv~lSATl 670 (1665)
.+....+++.|...
T Consensus 106 Pp~~t~fiLit~~~ 119 (198)
T d2gnoa2 106 PPEYAVIVLNTRRW 119 (198)
T ss_dssp CCTTEEEEEEESCG
T ss_pred CCCCCEEEECCCCH
T ss_conf 89885222206995
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.21 Score=22.82 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCC--CEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999883899--099982489860999999999999
Q 000324 498 RVQSRVYKSALSSAD--NILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 498 ~iQ~~~i~~~l~~~~--nilv~APTGsGKT~va~l~il~~l 536 (1665)
.-..+.+...+..+. ++|+++|+|+|||..+.. +++.+
T Consensus 20 ~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~-la~~l 59 (227)
T d1sxjc2 20 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA-LAREI 59 (227)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH-HHHHH
T ss_conf 99999999999769998599988998775589999-99985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.01 E-value=0.2 Score=22.92 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999988389-9099982489860999999999999
Q 000324 495 QLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~-~nilv~APTGsGKT~va~l~il~~l 536 (1665)
.+.+-|.+.+..++... .-+|+++|||||||... .++++.+
T Consensus 141 G~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~ 182 (401)
T d1p9ra_ 141 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 182 (401)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHH-HHHHHHH
T ss_conf 13577789999998641054898767877744779-9986662
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.31 Score=21.59 Aligned_cols=123 Identities=13% Similarity=0.154 Sum_probs=62.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCCCC
Q ss_conf 999878997389999999999998504899809999855-3999999999999986178895899994887211200279
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (1665)
Q Consensus 1360 vii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~P-t~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l~~ 1438 (1665)
+++..|||+|||....=-.. ++.. .+.+ .+++-+- .|.=+.++.+.|.+.++ +.+. .
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~--~g~k-V~lit~Dt~R~gA~eQL~~~a~~l~----v~~~--~------------ 69 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQ--QGKS-VMLAAGDTFRAAAVEQLQVWGQRNN----IPVI--A------------ 69 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHT--TTCC-EEEECCCTTCHHHHHHHHHHHHHTT----CCEE--C------------
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH--CCCC-EEEEECCCCCCCCHHHHHHHHHHCC----CCCC--C------------
T ss_conf 99989999998999999999-9997--7994-7998232136661204555434338----8621--1------------
Q ss_pred CCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC------CCCEEEEECCCCC
Q ss_conf 9599988256899997200024678701898604531288886059999999999986238------9970999954489
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE------NKIRIVALSTSLA 1512 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~------~~~riI~lSATl~ 1512 (1665)
+-+|+.+...+++.......+..+++++|=+-+.. .-+..+..+..+..... +.-.++.++|+..
T Consensus 70 ----~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~-----~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~ 140 (211)
T d2qy9a2 70 ----QHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQ-----NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 140 (211)
T ss_dssp ----CSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGG-----GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT
T ss_pred ----CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCCC
T ss_conf ----35687799999999999987699889965688763-----207789999999999853046686001220012357
Q ss_pred C
Q ss_conf 9
Q 000324 1513 N 1513 (1665)
Q Consensus 1513 n 1513 (1665)
.
T Consensus 141 ~ 141 (211)
T d2qy9a2 141 Q 141 (211)
T ss_dssp H
T ss_pred C
T ss_conf 6
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.16 Score=23.67 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 63346999999999999189871100158947873331383226899999840
Q 000324 1143 PLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195 (1665)
Q Consensus 1143 pL~Q~~~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~~~~i~~~~~~ 1195 (1665)
.|.++|+|++..+++|-++=-+++.+...+.+|+.++.+.++.++.|+++.|+
T Consensus 4 ~L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 4 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 56 (62)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 87669999999999999985249999869999997785958999999999810
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.17 E-value=0.33 Score=21.39 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=59.2
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCC
Q ss_conf 91999878997389999999999998504899809999855-39999999999999861788958999948872112002
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1358 dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~P-t~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l 1436 (1665)
.-++++.|||+|||....=-. .++.. .+.+ .+++-+- .|.=+.++.+.|.+.++ +.+ +...
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA-~~~~~--~g~k-V~lit~Dt~R~gA~eQL~~~a~~l~----i~~--~~~~-------- 68 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLG-RYYQN--LGKK-VMFCAGDTFRAAGGTQLSEWGKRLS----IPV--IQGP-------- 68 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHH-HHHHT--TTCC-EEEECCCCSSTTHHHHHHHHHHHHT----CCE--ECCC--------
T ss_pred EEEEEECCCCCCHHHHHHHHH-HHHHH--CCCC-EEEEEECCCCCCCHHHHHHCCCCCC----CEE--EECC--------
T ss_conf 799998999998899999999-99997--7990-7999813666540266764054568----238--9616--------
Q ss_pred CCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCCEEEEECCC
Q ss_conf 7995999882568999972000246787018986045312888860599999999999862------3899709999544
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------VENKIRIVALSTS 1510 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~------~~~~~riI~lSAT 1510 (1665)
++.-.....+........+..+++++|=+-+...+.. .+..+..+... ..+.-.++.++|+
T Consensus 69 --------~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~-----l~~el~~~~~~~~~~~~~~p~~~~LVl~a~ 135 (207)
T d1okkd2 69 --------EGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHN-----LMEELKKVKRAIAKADPEEPKEVWLVLDAV 135 (207)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHH-----HHHHHHHHHHHHHHHCTTCCSEEEEEEETT
T ss_pred --------CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf --------7742788999989999987999997175222311277-----888877777776532567873599996200
Q ss_pred CCC
Q ss_conf 899
Q 000324 1511 LAN 1513 (1665)
Q Consensus 1511 l~n 1513 (1665)
...
T Consensus 136 ~~~ 138 (207)
T d1okkd2 136 TGQ 138 (207)
T ss_dssp BCT
T ss_pred CCC
T ss_conf 471
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.52 E-value=0.37 Score=21.04 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=18.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99099982489860999999999999
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l 536 (1665)
...+|+.+|.|+|||..+- ++...+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~-ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAK-AIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHH-HHHHHT
T ss_pred CCEEEEECCCCCCCHHHHH-HHHHHH
T ss_conf 8757887899876304778-878771
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=89.30 E-value=0.064 Score=26.46 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 89998999999987399919998789973899999999999985048998099998553999
Q 000324 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~~~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eL 1402 (1665)
.+.+-+...+..+...+.|++++.|||||||... -+++..+ ++.. +++.|--+.|+
T Consensus 150 ~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i---~~~~--rivtiEd~~El 205 (323)
T d1g6oa_ 150 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFI---PKEE--RIISIEDTEEI 205 (323)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGS---CTTC--CEEEEESSCCC
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-HHHHHHC---CCCC--CEEECCCHHHH
T ss_conf 6699999999999983788899940356625789-9986530---1456--23311322655
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.4 Score=20.85 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 990999824898609999999999998428999999899709999935487899
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~ 564 (1665)
..+++|.++||||||..... ++..+... +..++++=|.-++..
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~-li~~~~~~----------g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRE-LAYTGLLR----------GDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHH-HHHHHHHT----------TCEEEEEEETTHHHH
T ss_pred CCEEEEEECCCCCHHHHHHH-HHHHHHHC----------CCCEEEEECCHHHHH
T ss_conf 26589990799968999999-99999847----------998899968716999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=88.85 E-value=0.41 Score=20.72 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=15.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 0999824898609999999999998
Q 000324 513 NILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 513 nilv~APTGsGKT~va~l~il~~l~ 537 (1665)
.+++.+|.|+|||+.+ ..++..+.
T Consensus 2 ki~I~G~~G~GKSTLl-~~i~~~l~ 25 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLV-KKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHG
T ss_pred EEEEECCCCCHHHHHH-HHHHHCCC
T ss_conf 8999989993899999-99981488
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.44 E-value=0.44 Score=20.54 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHCCC----CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 9999999999988389----909998248986099999999999984289999998997099999354878999999998
Q 000324 496 LNRVQSRVYKSALSSA----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 496 l~~iQ~~~i~~~l~~~----~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
-|..-..++..+.... ..+++.+|+|+|||-.+ .++.+.+... +..++|+ +...+..+....+.
T Consensus 17 ~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl-~A~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~ 84 (213)
T d1l8qa2 17 GNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLL-QAAGNEAKKR----------GYRVIYS-SADDFAQAMVEHLK 84 (213)
T ss_dssp TTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHH-HHHHHHHHHT----------TCCEEEE-EHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH-HHHHHHHCCC----------CCCEEEE-CHHHHHHHHHHHHH
T ss_conf 4999999999998676877885799888998399999-9999874467----------6504884-43787999999987
Q ss_pred HHHCCCCCEEEEEECCCCCCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73103894999997888636764403649992723599998314998644540089992531001688048999999999
Q 000324 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (1665)
Q Consensus 572 ~~~~~~gi~V~~ltGd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l~d~rg~~le~iv~r~~ 651 (1665)
.. .+..+.. .+...+++++|++|.+... +..+..+-.+.
T Consensus 85 ~~------------------------------~~~~~~~---------~~~~~dll~iDDi~~i~~~--~~~~~~lf~li 123 (213)
T d1l8qa2 85 KG------------------------------TINEFRN---------MYKSVDLLLLDDVQFLSGK--ERTQIEFFHIF 123 (213)
T ss_dssp HT------------------------------CHHHHHH---------HHHTCSEEEEECGGGGTTC--HHHHHHHHHHH
T ss_pred CC------------------------------CHHHHHH---------HHHHCCCHHHHHHHHHCCC--HHHHHHHHHHH
T ss_conf 16------------------------------6266789---------8762130101126550586--57788999999
Q ss_pred HHHHHCCCCEEEEEECCCCC
Q ss_conf 99851168700999933378
Q 000324 652 RQIETTKEHIRLVGLSATLP 671 (1665)
Q Consensus 652 ~~~~~~~~~~riv~lSATl~ 671 (1665)
... ...+.++|..|...|
T Consensus 124 n~~--~~~~~~iiits~~~p 141 (213)
T d1l8qa2 124 NTL--YLLEKQIILASDRHP 141 (213)
T ss_dssp HHH--HHTTCEEEEEESSCG
T ss_pred HHH--HHCCCEEEEECCCCC
T ss_conf 987--631663899548751
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.15 E-value=0.46 Score=20.41 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=52.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 89909998248986099999999999984289999998997099999354878999999998731038949999978886
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 510 ~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
.+.-+.+.+|.|+|||..++.++...... +.+++||-.--++..+.++.+ |+.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~-----------g~~~vyIDtE~~~~~e~a~~~-------GvD--------- 111 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANAQAA-----------GGVAAFIDAEHALDPDYAKKL-------GVD--------- 111 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHHHHT-----------TCEEEEEESSCCCCHHHHHHH-------TCC---------
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCCCHHHHHHH-------CCC---------
T ss_conf 63369996488748899999999987548-----------988999989766799999980-------998---------
Q ss_pred CCHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
Q ss_conf 3676440364999272359999831499864454008999253100
Q 000324 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~liIiDEvH~l 635 (1665)
. .+|++..|+....++........-..+++||+|-+-.+
T Consensus 112 ~-------d~il~~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~al 150 (269)
T d1mo6a1 112 T-------DSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAAL 150 (269)
T ss_dssp G-------GGCEEECCSSHHHHHHHHHHHHHTTCEEEEEEECSTTC
T ss_pred H-------HHEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 8-------99589669989999999999985599878999330245
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.79 E-value=0.48 Score=20.27 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=17.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9909998248986099999999999
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQ 535 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~ 535 (1665)
...+|+.+|.|+|||..+- ++...
T Consensus 38 ~~giLL~GppGtGKT~l~~-ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIAR-AVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCCHHHHH-HHHHH
T ss_conf 8646876699888308999-99987
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.33 E-value=0.51 Score=20.08 Aligned_cols=119 Identities=14% Similarity=0.231 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHCCC----CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 998999999987399----9199987899738999999999999850489980999985539999999999999861788
Q 000324 1343 NPIQTQVFTVLYNTD----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (1665)
Q Consensus 1343 ~~iQ~q~i~~l~~~~----dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~ 1418 (1665)
|..-..+...+.++. ..+++..|+|+|||-.... +.+.+.. ... .++|+ +..+...+....+...
T Consensus 18 N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A-~~~~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~----- 86 (213)
T d1l8qa2 18 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQA-AGNEAKK--RGY--RVIYS-SADDFAQAMVEHLKKG----- 86 (213)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHH-HHHHHHH--TTC--CEEEE-EHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH-HHHHHCC--CCC--CEEEE-CHHHHHHHHHHHHHCC-----
T ss_conf 99999999999867687788579988899839999999-9987446--765--04884-4378799999998716-----
Q ss_pred CCEEEEEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHH-HHHHHHHHHHH
Q ss_conf 95899994887211200279959998825689999720002467870189860453128888605999-99999999862
Q 000324 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV-IVSRMRYIASQ 1497 (1665)
Q Consensus 1419 ~~~V~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~-~isrl~~i~~~ 1497 (1665)
.+.. +.. .+...+++++|++|.+.+.. ..+. +..-+..+
T Consensus 87 --------------------------~~~~---~~~------~~~~~dll~iDDi~~i~~~~--~~~~~lf~lin~~--- 126 (213)
T d1l8qa2 87 --------------------------TINE---FRN------MYKSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTL--- 126 (213)
T ss_dssp --------------------------CHHH---HHH------HHHTCSEEEEECGGGGTTCH--HHHHHHHHHHHHH---
T ss_pred --------------------------CHHH---HHH------HHHHCCCHHHHHHHHHCCCH--HHHHHHHHHHHHH---
T ss_conf --------------------------6266---789------87621301011265505865--7788999999987---
Q ss_pred CCCCCEEEEECCCCC
Q ss_conf 389970999954489
Q 000324 1498 VENKIRIVALSTSLA 1512 (1665)
Q Consensus 1498 ~~~~~riI~lSATl~ 1512 (1665)
...+.++|..|...|
T Consensus 127 ~~~~~~iiits~~~p 141 (213)
T d1l8qa2 127 YLLEKQIILASDRHP 141 (213)
T ss_dssp HHTTCEEEEEESSCG
T ss_pred HHCCCEEEEECCCCC
T ss_conf 631663899548751
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.32 E-value=0.15 Score=23.86 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=19.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99099982489860999999999999
Q 000324 511 ADNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~l~il~~l 536 (1665)
..++|+++|||+|||..|- ++.+.+
T Consensus 49 ~~~iLl~GPpG~GKT~lAk-alA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIAR-RLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHCC
T ss_conf 8669998999988889999-986213
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.29 E-value=0.51 Score=20.07 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=17.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 909998248986099999999999
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQ 535 (1665)
Q Consensus 512 ~nilv~APTGsGKT~va~l~il~~ 535 (1665)
.++++.+|.|+|||.++- ++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~-~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAH-LVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHHH
T ss_conf 449998799998889999-99999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.21 E-value=0.11 Score=24.90 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=25.7
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 8701898604531288886059999999999986238997099995448
Q 000324 1463 QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (1665)
Q Consensus 1463 ~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl 1511 (1665)
....++|+||+|.+... ....++.+......++++|+.+..+
T Consensus 130 ~~~~iiiide~d~l~~~-------~~~~l~~~~e~~~~~~~~Il~tn~~ 171 (252)
T d1sxje2 130 HRYKCVIINEANSLTKD-------AQAALRRTMEKYSKNIRLIMVCDSM 171 (252)
T ss_dssp -CCEEEEEECTTSSCHH-------HHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCEEEEECCCCCCCCC-------CCHHHHCCCCCCCCCCCCEEEECCC
T ss_conf 87249994243334543-------1112210022135664300010211
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.87 E-value=0.54 Score=19.91 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=21.3
Q ss_pred HHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99988389--9099982489860999999999999
Q 000324 504 YKSALSSA--DNILLCAPTGAGKTNVAVLTILQQL 536 (1665)
Q Consensus 504 i~~~l~~~--~nilv~APTGsGKT~va~l~il~~l 536 (1665)
+..++..+ .++++++|.|+|||.++. .+++.+
T Consensus 36 l~~~i~~~~~~~lll~Gp~G~GKTtla~-~iak~l 69 (231)
T d1iqpa2 36 LKHYVKTGSMPHLLFAGPPGVGKTTAAL-ALAREL 69 (231)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHH-HHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHH-HHHHHH
T ss_conf 9999985999769997899974879999-999998
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.75 E-value=0.43 Score=20.61 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHCCC
Q ss_conf 33469999999999991898-71100158947873331383-22689999984089
Q 000324 1144 LRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFP 1197 (1665)
Q Consensus 1144 L~Q~~~i~~~~i~~le~~~~-~~~~l~~l~~~el~~ll~~~-~~~~~i~~~~~~~P 1197 (1665)
|.++|+|++..+++|..+++ +++++...+++++.++-+.. +..+.+.+.++..-
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 97888989999999998369999999859999998778989999999999999871
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=86.73 E-value=0.55 Score=19.86 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=15.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 9999935487899999999873103894999997888636
Q 000324 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (1665)
Q Consensus 552 kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~~~ 591 (1665)
|+|+.+-.+....-+...+ ...|+.+..++|+++..
T Consensus 120 KvlIFs~~~~~ld~l~~~l----~~~g~~~~~l~G~~~~~ 155 (346)
T d1z3ix1 120 KVVLVSNYTQTLDLFEKLC----RNRRYLYVRLDGTMSIK 155 (346)
T ss_dssp EEEEEESCHHHHHHHHHHH----HHHTCCEEEECSSCCHH
T ss_pred CEEEEEEHHHHHHHHHHHH----HHHHCCCCCCCCCHHHH
T ss_conf 5168863014567999997----63002411011100278
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.56 E-value=0.17 Score=23.38 Aligned_cols=19 Identities=58% Similarity=0.788 Sum_probs=16.6
Q ss_pred CCCEEEECCCCCCHHHHHH
Q ss_conf 9909998248986099999
Q 000324 511 ADNILLCAPTGAGKTNVAV 529 (1665)
Q Consensus 511 ~~nilv~APTGsGKT~va~ 529 (1665)
..|+|.++|||+|||.+|-
T Consensus 68 ~~niLfiGPTGvGKTElAk 86 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMAQ 86 (364)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
T ss_conf 7532441899863789999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=86.10 E-value=0.59 Score=19.64 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999999999988389909998248986099999999999984289999998997099999354878999999998
Q 000324 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (1665)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~ 571 (1665)
||..|+.. + .-+..++-+++.|+||+|||..+...+.+..... +.+++|++.--. ..++..++.
T Consensus 21 G~~~lD~~----~-~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~----------g~~v~~~s~E~~-~~~~~~r~~ 84 (277)
T d1cr2a_ 21 GCTGINDK----T-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM----------GKKVGLAMLEES-VEETAEDLI 84 (277)
T ss_dssp SCTTHHHH----H-CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTS----------CCCEEEEESSSC-HHHHHHHHH
T ss_pred CCHHHHHH----H-CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC----------CCCEEEEEECCC-HHHHHHHHH
T ss_conf 83668887----4-6978980899994799979999999997265533----------663457640111-135776999
Q ss_pred H
Q ss_conf 7
Q 000324 572 N 572 (1665)
Q Consensus 572 ~ 572 (1665)
.
T Consensus 85 ~ 85 (277)
T d1cr2a_ 85 G 85 (277)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.02 E-value=0.59 Score=19.61 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=61.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCCCC
Q ss_conf 99987899738999999999999850489980999985-53999999999999986178895899994887211200279
Q 000324 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (1665)
Q Consensus 1360 vii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~-Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l~~ 1438 (1665)
+++..|||+|||....=-+. ++.. .+.+ .+++-+ ..|.=+.++.+.|.+.++ +.+. ..
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~--~g~k-V~lit~Dt~R~ga~eQL~~~a~~l~----v~~~--~~----------- 73 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKK--KGFK-VGLVGADVYRPAALEQLQQLGQQIG----VPVY--GE----------- 73 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHH--TTCC-EEEEECCCSSHHHHHHHHHHHHHHT----CCEE--CC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH--CCCC-EEEEEEECCCCCHHHHHHHHCCCCC----CCEE--EC-----------
T ss_conf 99989999998999999999-9997--7993-6999720235515678987401468----4223--02-----------
Q ss_pred CCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 959998825689999720002467870189860453128888605999999999998623899709999544899
Q 000324 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (1665)
Q Consensus 1439 ~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSATl~n 1513 (1665)
.+++.+....++..........+++++|=+-+...+. ....+..+..+.......-.++.++|+...
T Consensus 74 -----~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~---~~~~~~el~~~~~~~~~~~~~LVl~a~~~~ 140 (211)
T d1j8yf2 74 -----PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGE---EAALLEEMKNIYEAIKPDEVTLVIDASIGQ 140 (211)
T ss_dssp -----TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTC---HHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred -----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH---HHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf -----4410244789999987402677369985377676313---667899999998625976689998435684
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.15 E-value=0.65 Score=19.33 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 089992531001688048999999999998511687009999333
Q 000324 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (1665)
Q Consensus 625 ~liIiDEvH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (1665)
-++++||+|.+.. -+.++.+++.. ....+.+++.+-+
T Consensus 278 v~l~lDE~~~~~~--~~~l~~~l~~~------Rk~Gv~~~l~~Qs 314 (433)
T d1e9ra_ 278 LWLFIDELASLEK--LASLADALTKG------RKAGLRVVAGLQS 314 (433)
T ss_dssp EEEEESCGGGSCB--CSSHHHHHHHC------TTTTEEEEEEESC
T ss_pred EEEEECHHHHHCC--CHHHHHHHHHH------CCCCCEEEEEECC
T ss_conf 4998353755256--08799999984------7899159999364
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.91 E-value=0.41 Score=20.78 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=35.6
Q ss_pred HHHHHHC-----CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 9999883-----8990999824898609999999999998428999999899709999935487899999
Q 000324 503 VYKSALS-----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (1665)
Q Consensus 503 ~i~~~l~-----~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~ 567 (1665)
.++.++. .+.-+.+.+|.|+|||..++..+...... +.+++|+----+...+.+
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~-----------g~~~vyidtE~~~~~~~a 99 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----------GKTCAFIDAEHALDPIYA 99 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-----------TCCEEEEESSCCCCHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-----------CCEEEEECCCCCCCHHHH
T ss_conf 99997567996673589980577747899999999998708-----------987999865445489999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.90 E-value=0.64 Score=19.40 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=49.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 89909998248986099999999999984289999998997099999354878999999998731038949999978886
Q 000324 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (1665)
Q Consensus 510 ~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~kaLa~q~~~~~~~~~~~~gi~V~~ltGd~~ 589 (1665)
.+.-+.+.+|.|+|||..++..+...... +.+++|+----++-.+.++.+ |+.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~-----------g~~v~yiDtE~~~~~~~a~~~-------Gvd--------- 108 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQAQKA-----------GGTCAFIDAEHALDPVYARAL-------GVN--------- 108 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-----------TCCEEEEESSCCCCHHHHHHT-------TCC---------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-----------CCEEEEEECCCCCCHHHHHHH-------CCC---------
T ss_conf 75478980587652279999999999707-----------998999988765899999982-------898---------
Q ss_pred CCHHHHCCCCEEEECHHHHHH---HHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 367644036499927235999---98314998644540089992531001
Q 000324 590 LTRQQIEETQIIVTTPEKWDI---ITRKSGDRTYTQLVKLLIIDEIHLLH 636 (1665)
Q Consensus 590 ~~~~~~~~~~IiV~TPekld~---l~r~~~~~~~l~~v~liIiDEvH~l~ 636 (1665)
. .++++..|..... +..... .-..+++||+|=+-.+.
T Consensus 109 ~-------d~i~~~~~~~~E~~~~~~~~l~---~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 109 T-------DELLVSQPDNGEQALEIMELLV---RSGAIDVVVVDSVAALT 148 (268)
T ss_dssp G-------GGCEEECCSSHHHHHHHHHHHH---TTTCCSEEEEECTTTCC
T ss_pred C-------HHEEEECCCCHHHHHHHHHHHH---HCCCCCEEEEECCCCCC
T ss_conf 1-------2379974899999999999998---65897199994545455
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=83.34 E-value=0.77 Score=18.81 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999899999998739-9919998789973899999999999985
Q 000324 1341 HFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQK 1384 (1665)
Q Consensus 1341 ~~~~iQ~q~i~~l~~~-~dnvii~apTGSGKTl~~~lail~~l~~ 1384 (1665)
.+.+-|.+.+..+... ..-++++.|||||||..... +++.+..
T Consensus 141 G~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~-~l~~~~~ 184 (401)
T d1p9ra_ 141 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA-GLQELNS 184 (401)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH-HHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHH-HHHHHCC
T ss_conf 1357778999999864105489876787774477999-8666257
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.90 E-value=0.8 Score=18.69 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCC
Q ss_conf 91999878997389999999999998504-89980999985539999999999999861788958999948872112002
Q 000324 1358 DNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (1665)
Q Consensus 1358 dnvii~apTGSGKTl~~~lail~~l~~~~-~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~~ltG~~~~~~~~l 1436 (1665)
.++++..|.|+|||.++.+ +.+.+.... ... ....++. .+.. +. ... ...+..+.+....
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~-~~~~l~~~~~~~~--~~~~~~~---~~~~----i~---~~~-~~~~~~~~~~~~~----- 95 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARL-LAKGLNCETGITA--TPCGVCD---NCRE----IE---QGR-FVDLIEIDAASRT----- 95 (239)
T ss_dssp SEEEEECSTTSSHHHHHHH-HHHHHHCTTCSCS--SCCSCSH---HHHH----HH---HTC-CTTEEEEETTCSS-----
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHCCCCCCCC--CCCCCCH---HHHH----HH---CCC-CCEEEEECCHHCC-----
T ss_conf 0598888998758999999-9998468556666--7555424---7999----97---479-8707996112007-----
Q ss_pred CCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 79959998825689999720002467870189860453128888605999999999998623899709999544
Q 000324 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (1665)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riI~lSAT 1510 (1665)
.-+.+..+.........-...+++|+||+|.+... ....++.+....+..+++|+.+..
T Consensus 96 --------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-------~q~~Llk~lE~~~~~~~~il~tn~ 154 (239)
T d1njfa_ 96 --------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------SFNALLKTLEEPPEHVKFLLATTD 154 (239)
T ss_dssp --------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------HHHHHHHHHHSCCTTEEEEEEESC
T ss_pred --------CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH-------HHHHHHHHHHCCCCCEEEEEECCC
T ss_conf --------89999999999974652599879999781108999-------999999998568988699997388
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.66 E-value=0.82 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=8.3
Q ss_pred CEEEEEEECCCCC
Q ss_conf 4008999253100
Q 000324 623 LVKLLIIDEIHLL 635 (1665)
Q Consensus 623 ~v~liIiDEvH~l 635 (1665)
.+++|+|||++-.
T Consensus 377 ~~~~ilVDEfQDt 389 (485)
T d1w36b1 377 RFPVAMIDEFQDT 389 (485)
T ss_dssp HCSEEEECSGGGC
T ss_pred CCCEEEECCCCCC
T ss_conf 4786871120127
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=82.32 E-value=0.6 Score=19.59 Aligned_cols=19 Identities=47% Similarity=0.857 Sum_probs=16.3
Q ss_pred CCEEEECCCCCCHHHHHHH
Q ss_conf 9099982489860999999
Q 000324 512 DNILLCAPTGAGKTNVAVL 530 (1665)
Q Consensus 512 ~nilv~APTGsGKT~va~l 530 (1665)
.++|+++|+|+|||.+|-+
T Consensus 36 ~~~L~~GPpGtGKT~lA~~ 54 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHI 54 (238)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7489879999738899999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.94 E-value=0.86 Score=18.47 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=30.6
Q ss_pred HHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9999883----899099982489860999999999999842899999989970999993548
Q 000324 503 VYKSALS----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (1665)
Q Consensus 503 ~i~~~l~----~~~nilv~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kii~iaP~k 560 (1665)
.++.++. .+..+++.+|+|+|||..++..+........ ....+.+++|+.-..
T Consensus 22 ~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~-----~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 22 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLD-----IGGGEGKCLYIDTEG 78 (251)
T ss_dssp HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTT-----TTCCSCEEEEEESSS
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH-----HCCCCCEEEEEEECC
T ss_conf 899631799869969999838999889999999998631243-----126896399994023
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.87 E-value=0.87 Score=18.43 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHH
Q ss_conf 9199987899738999999999
Q 000324 1358 DNVLVAAPTGSGKTICSEFAIL 1379 (1665)
Q Consensus 1358 dnvii~apTGSGKTl~~~lail 1379 (1665)
.++++..|.|+|||.++.+-+-
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHH
T ss_conf 7499988999870546999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.91 E-value=0.94 Score=18.20 Aligned_cols=116 Identities=10% Similarity=-0.015 Sum_probs=62.7
Q ss_pred HHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999998739--9919998789973899999999999985048998099998553999999999999986178895899
Q 000324 1346 QTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (1665)
Q Consensus 1346 Q~q~i~~l~~~--~dnvii~apTGSGKTl~~~lail~~l~~~~~~~~~raivI~Pt~eLa~q~~~~~~~~f~~~~~~~V~ 1423 (1665)
|.+.+..+.+. ..++++..|.|+|||..+.... +.+.. .....|-.+++.|-..-
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~-~~~~h~D~~~i~~~~~~--------------------- 58 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEK-FPPKASDVLEIDPEGEN--------------------- 58 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHT-SCCCTTTEEEECCSSSC---------------------
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-HHHHC-CCCCCCCEEEEECCCCC---------------------
T ss_conf 78999999966998559988989988899999999-99843-45679988998077678---------------------
Q ss_pred EEECCCCCCHHCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99488721120027995999882568999972000246787018986045312888860599999999999862389970
Q 000324 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (1665)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (1665)
| .-+....+.+...........+.+|+||||.|... ....+..+...-+..+.
T Consensus 59 -----------------I---~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~-------aqNaLLK~LEEPp~~t~ 111 (198)
T d2gnoa2 59 -----------------I---GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------AANAFLKALEEPPEYAV 111 (198)
T ss_dssp -----------------B---CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------HHHHTHHHHHSCCTTEE
T ss_pred -----------------C---CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH-------HHHHHHHHHHCCCCCCE
T ss_conf -----------------9---98999999999961754589879999473103666-------66478887737898852
Q ss_pred EEEECCCC
Q ss_conf 99995448
Q 000324 1504 IVALSTSL 1511 (1665)
Q Consensus 1504 iI~lSATl 1511 (1665)
+++.|...
T Consensus 112 fiLit~~~ 119 (198)
T d2gnoa2 112 IVLNTRRW 119 (198)
T ss_dssp EEEEESCG
T ss_pred EEECCCCH
T ss_conf 22206995
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.48 E-value=0.97 Score=18.11 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=19.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 90999824898609999999999998
Q 000324 512 DNILLCAPTGAGKTNVAVLTILQQLA 537 (1665)
Q Consensus 512 ~nilv~APTGsGKT~va~l~il~~l~ 537 (1665)
.++++.+|+|+|||.++ -.+++.+.
T Consensus 44 ~~lll~GppGtGKT~l~-~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL-RKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHT
T ss_pred CCEEEECCCCCCHHHHH-HHHHHHHH
T ss_conf 81688898999899999-99999975
|