Citrus Sinensis ID: 000338

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------164

MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

cccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHEEEEccccccccccccccHHHHHccHHHHcccHHHHHHHHccccccccccccccccccccccc

ccccccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHEEEcccccccccccccccEEcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHEcccHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEEcccccccccccHHHHHHHHHHccccEEEEEEcHcHHHHccHHHHHHccHHHHHHHHHccccccEEEccccHHHHHEEEEEEcccccHHHHHHHHHHccccHHHHcccccccccccEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHcHHHHHHHHHHcccHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccEccHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHcHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHcccHHHHHccHHHHHccccHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccEEEEccccccccccc

mdqnqsqrssigaatassassrayqfhPARAAIIDLFNLylgrssrqkqddsirdppffNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNrelpprneqFLIDFEQlqsqfpdqdqlrSVTESVLISMVVQCCSHVPRAEFILFALRSLCSigyinwdtfLPSLLSSvssaemsagqgsqampavsatslqqsgmlptssgipnssnyqssnpasplpsvhgigspaqsaiETSVcaamspvkssdvsctgqqfttrvnsSVRDNAISSLRQLCCKIILTGLefslkpvthADIFYHMLNWLVTWDqkqqgidesdgksWRLDKALIEWLHSCLDVIWLlvdedrcrvpFYELLRTGLQfienipddEALFTLILEIHRRRDMMAMHMQMLDqhlhcptfgthrilsqttpnisveaagnlryspitypsvlgeplhgedlatsiqrgSLDWERAMRCIRHAiratpspdwwKRVLLVapcyrnpaqgptpgavftYDMISEAVIDRIVELLKLTnsevncwhdwlIFSDVFFFLVKSGCIDFVDFVDKLVSRlqdgdnhilRTNHVTWLLAQIIRVELVMGalnsdsrkVETTRKILSFHredrctdpnnpqSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLssagvtelfpgsnlppnerlmvmrevnplpmslltGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAqrnpsllakvgvtpLVLEIVNYRLlplyryqgkTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDffslkregkgsteftETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQctqllspsadptyvktylshsfpqhRQYLCAGAWIlmqghpeninSANLLRVLRefspeevtsNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYcmnrgppehwlySGLFKRVELQKALGNhlswkeryptfFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNvfdlskipfsesfpqhisssnpvmcpplDYFATLLLGLVNNvipalnynsksgstmdaslraphnkspmtsqsgpsnvsegrkefyqnqdpgtyTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIqptliqtsngpygasnsvgqgsvlptspsggstdslgasrstpsvsgintssfvsrsgytcqqLSCLLIQACGLLlaqlppdfhMQLYMEASRIIKESwwladgkrslgeldsavgyalldptwaaqdntsTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMgpllprlvNAHTLFNKTLALLLNTMgdvygkntlppapveasEIADLIDFLHHVVHyegqggpvqasskprpevLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

mdqnqsqrssigaatassassrAYQFHPARAAIIDLFNLYLGRSsrqkqddsirdPPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLqfienipddeALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHairatpspdwwKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMgalnsdsrkvETTRKILSfhredrctdpnnPQSILLDFISSCQNLRIWSLNTSTREYLnneqlqkgkqidewWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSllakvgvtplVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGkgsteftetlnrITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRaphnkspmtsqsgpsnvSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQggpvqasskprPEVLVLTGRAAESLRPEVQHLLSHlkpdvnssiyaathpkmvqnps

MDQNQSQRssigaatassassraYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFlpsllssvssAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGdrmmdymnmddrSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEllpldilllalidrdddpHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPvsasqivsslvqivvniqPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

***********************YQFHPARAAIIDLFNLYLG*************PPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQ*******QLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLL****************************************************************************************FTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSD***VETTRKILSFHR***C******QSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNY*******************************************GTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQT*********************************************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEG**********************************************************

****************************ARAAIIDLFNLY********************LRLLIRGLVACCGGILLIVE************************QFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS************************************************************************************************DNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQ*****************ALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCY***********VFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLN****************QIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFP******N*RLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIF**QVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILS******************ETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQA*QQA**TV***C***L***ADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQR*HSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLR****************VSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLG***************FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPV****KPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAAT*********

**********************AYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSS*********************SLQQSGMLPTSSGIP****************VHGIGSPAQSAIETSV***************GQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRA*******************RKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLP********************SGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQG*********RPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS

************************QFHPARAAIIDLFNLYLGRS*******SIRDPPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEM***************************************************************************************SVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQG*****GKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSP**************************SRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKM*****

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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1639	2.2.26 [Sep-21-2011]
F4I4P3		1615	Mediator of RNA polymeras	yes	no	0.960	0.974	0.722	0.0
Q9W1X7		1439	Mediator of RNA polymeras	yes	no	0.344	0.391	0.212	2e-12
Q55BN0		1662	Putative mediator of RNA	yes	no	0.248	0.244	0.220	1e-10
Q16HH9		1409	Mediator of RNA polymeras	N/A	no	0.339	0.394	0.207	7e-09
Q5RIW8		1376	Mediator of RNA polymeras	yes	no	0.450	0.536	0.206	3e-08
Q5EB59		1367	Mediator of RNA polymeras	yes	no	0.445	0.534	0.201	4e-08
Q9ULK4		1368	Mediator of RNA polymeras	yes	no	0.454	0.544	0.2	2e-07
Q80YQ2		1367	Mediator of RNA polymeras	yes	no	0.445	0.534	0.203	2e-07
Q6P423		1369	Mediator of RNA polymeras	N/A	no	0.360	0.431	0.209	3e-05
Q60UZ5		1589	Mediator of RNA polymeras	N/A	no	0.170	0.175	0.218	5e-05

>sp\|F4I4P3\|MED23_ARATH Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1	Back alignment and function desciption

 Score = 2437 bits (6316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1198/1658 (72%), Positives = 1373/1658 (82%), Gaps = 84/1658 (5%)

Query: 4    NQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRL 63
            +QSQR+      A+ +SSR+YQFHPARAAIIDLFNLYLGR SRQK D+S+RDPP      
Sbjct: 2    DQSQRT----VAATPSSSRSYQFHPARAAIIDLFNLYLGRGSRQKPDESLRDPP------ 51

Query: 64   LIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQL 123
                                  NK+QKRV A NR+LPPRNEQFL+DFE LQSQF D +QL
Sbjct: 52   ----------------------NKSQKRVHAPNRDLPPRNEQFLLDFELLQSQFNDPEQL 89

Query: 124  RSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQ 183
            R++TESVLIS+VVQC +H PRAEF+LFALR+LC I YINWDTFLPSLLSSVS+AE S  Q
Sbjct: 90   RTITESVLISLVVQCSNHAPRAEFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQ 149

Query: 184  GSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCA 243
            G QA  A + +S   S           S    S NP S LPS HGIGSP+ S ++     
Sbjct: 150  GVQAAAATAGSSATSS----------QSVVPVSVNPTSLLPSAHGIGSPSASEVK----- 194

Query: 244  AMSPVKSSDVSCTGQ---QFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADI 300
              S      ++  GQ   +   R +  +R  A++SLRQL CKIIL G+E SLKPVTHA+I
Sbjct: 195  --SVENGQQIARAGQIVRENAMRNSQRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEI 252

Query: 301  FYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELL 360
            F +M+NWLV WD++  G ++S GKSWR +K L EWL SCLDVIWLLV+E   R+PFYELL
Sbjct: 253  FQYMMNWLVNWDRRDLGTEDSVGKSWRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELL 312

Query: 361  RTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNIS 420
            R+GLQFIENIPDDEALFTLI+EIHRRRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+ 
Sbjct: 313  RSGLQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVP 372

Query: 421  VEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKR 480
             EA  +LR+SPITYPSVLGEPL+GEDLA SI +GSLDWERA+RCIRHAIR TPSPDWWKR
Sbjct: 373  PEAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKR 432

Query: 481  VLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTNS---------------- 523
            VL+VAPCYR   Q GP PGAVFT DMI EA+IDRIVELLKLTNS                
Sbjct: 433  VLVVAPCYRPSTQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPP 492

Query: 524  ---EVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQI 580
               + NCW +WL+FSD+FFFL+KSGC DFVDF+DKLV RL   DNHILRTNHVTWLLAQI
Sbjct: 493  LYADANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQI 552

Query: 581  IRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTS 640
            IRVELVM ALNSD++KVETTRKILSFHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+
Sbjct: 553  IRVELVMTALNSDAKKVETTRKILSFHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTT 612

Query: 641  TREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMN 700
            TR YLNNEQL KGKQIDEWWR  SKG+RMMDYMNMDDRS+GMFWVVSYTMAQPACETV+N
Sbjct: 613  TRAYLNNEQLLKGKQIDEWWR--SKGERMMDYMNMDDRSIGMFWVVSYTMAQPACETVIN 670

Query: 701  WLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQV 760
            WLSSAG+ EL PG  L PN+R+M+ +EV PLPMSLL+GFS+NLCLKLALQME+++F  QV
Sbjct: 671  WLSSAGMAEL-PG--LQPNDRVMMTQEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQV 727

Query: 761  VASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRY 820
            V SIAMVETYTRL+L++PHS+FRS FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRY
Sbjct: 728  VPSIAMVETYTRLLLISPHSMFRSHFSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRY 787

Query: 821  QGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTE 880
            QGK+KTLMYD+TKIISALK KRGDHR+ RLAENLCMNLILS RDFFS+KREGKG TEFTE
Sbjct: 788  QGKSKTLMYDVTKIISALKGKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTE 847

Query: 881  TLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALI 940
            TLNRIT++ LAI IKTRGIAD DH++YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L 
Sbjct: 848  TLNRITIMTLAITIKTRGIADPDHMVYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLK 907

Query: 941  GRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILM 1000
            GR+DKRGL+IQAWQQAETTVINQCTQLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LM
Sbjct: 908  GRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLM 967

Query: 1001 QGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANI 1060
            QGH ENINS NL RVLRE SPEEVT+NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN+
Sbjct: 968  QGHAENINSTNLARVLREVSPEEVTANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANL 1027

Query: 1061 SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 1120
            +FF  THE+LPLDI LLALIDRDDDPHAL I ++LL   +L  R+K YC NRG PEHWL 
Sbjct: 1028 AFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLV 1087

Query: 1121 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLAT 1180
            + +FKR ELQKALGNHLSWK+RYPTFFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  
Sbjct: 1088 TQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLA 1147

Query: 1181 YSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVM 1240
            +S FLAY+PLRF+FVRDILAYFYGHLPGKL++R+L V DLSKIPFSESFPQ+IS +   +
Sbjct: 1148 HSHFLAYHPLRFTFVRDILAYFYGHLPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPV 1207

Query: 1241 CPPLDYFATLLLGLVNNVIPALNYNSKS-------GSTMDASLRAPHNKSPMTSQSGPSN 1293
            CPPLDYFA+LLL LVNNVIP L+ +S            +++S R PH K+P TSQ GP+N
Sbjct: 1208 CPPLDYFASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPAN 1267

Query: 1294 VSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNG 1353
             SEG+K FYQ QDPGTYTQLVLETAVIEILSLPVSA+QIVSSLVQI+VNIQ TLIQ+ NG
Sbjct: 1268 ASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNG 1327

Query: 1354 PYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQ 1413
             +GA+N VGQGSVLPTSPSGGSTDS+ ASRST  + GINT+SFVSRSGYTCQQLSCLLIQ
Sbjct: 1328 FHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQ 1387

Query: 1414 ACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNT 1473
            ACGLLLAQLPPDFH+QLY+EA+R+ +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNT
Sbjct: 1388 ACGLLLAQLPPDFHVQLYLEAARVTRETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNT 1447

Query: 1474 STAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAH 1533
            STAIGNIVALLH+FFSNLPQEWL+GT+ II +LRP+TSVAMLR+VFRIMGPLLPRL + H
Sbjct: 1448 STAIGNIVALLHAFFSNLPQEWLDGTNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTH 1507

Query: 1534 TLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPR 1593
            TLFNKTL LLL+ + DV+GK     APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPR
Sbjct: 1508 TLFNKTLMLLLSALVDVFGKTAQTTAPVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPR 1567

Query: 1594 PEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATH 1631
            P++L L GRAAE+LRP+VQHLL+HLK + NSSIYAA H
Sbjct: 1568 PDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAAH 1605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9W1X7\|MED23_DROME Mediator of RNA polymerase II transcription subunit 23 OS=Drosophila melanogaster GN=MED23 PE=1 SV=1	Back alignment and function description

>sp\|Q55BN0\|MED23_DICDI Putative mediator of RNA polymerase II transcription subunit 23 OS=Dictyostelium discoideum GN=med23 PE=3 SV=1	Back alignment and function description

>sp\|Q16HH9\|MED23_AEDAE Mediator of RNA polymerase II transcription subunit 23 OS=Aedes aegypti GN=MED23 PE=3 SV=1	Back alignment and function description

>sp\|Q5RIW8\|MED23_DANRE Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio GN=med23 PE=2 SV=2	Back alignment and function description

>sp\|Q5EB59\|MED23_RAT Mediator of RNA polymerase II transcription subunit 23 OS=Rattus norvegicus GN=Med23 PE=2 SV=2	Back alignment and function description

>sp\|Q9ULK4\|MED23_HUMAN Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens GN=MED23 PE=1 SV=2	Back alignment and function description

>sp\|Q80YQ2\|MED23_MOUSE Mediator of RNA polymerase II transcription subunit 23 OS=Mus musculus GN=Med23 PE=1 SV=2	Back alignment and function description

>sp\|Q6P423\|MED23_XENLA Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis GN=med23 PE=2 SV=1	Back alignment and function description

>sp\|Q60UZ5\|MED23_CAEBR Mediator of RNA polymerase II transcription subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1639
255586806		1613	conserved hypothetical protein [Ricinus	0.978	0.994	0.829	0.0
356530772		1615	PREDICTED: uncharacterized protein LOC10	0.980	0.995	0.789	0.0
359472598		1663	PREDICTED: uncharacterized protein LOC10	0.947	0.933	0.820	0.0
297845394		1637	hypothetical protein ARALYDRAFT_472581 [	0.968	0.969	0.725	0.0
334182788		1592	uncharacterized protein [Arabidopsis tha	0.957	0.986	0.729	0.0
15220680		1615	uncharacterized protein [Arabidopsis tha	0.960	0.974	0.722	0.0
297737648		1550	unnamed protein product [Vitis vinifera]	0.911	0.963	0.736	0.0
9295691		1583	F26F24.8 [Arabidopsis thaliana]	0.946	0.979	0.711	0.0
115448499		1620	Os02g0732700 [Oryza sativa Japonica Grou	0.974	0.985	0.666	0.0
242062622		1613	hypothetical protein SORBIDRAFT_04g02884	0.973	0.989	0.664	0.0

>gi\|255586806\|ref\|XP_002534017.1\| conserved hypothetical protein [Ricinus communis] gi\|223525976\|gb\|EEF28365.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 2730 bits (7076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1367/1648 (82%), Positives = 1479/1648 (89%), Gaps = 44/1648 (2%)

Query: 1    MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFN 60
            MDQNQ    SI A TA+S   R YQF PARAAIIDLFNLYLGRSSRQK DDS R+PP   
Sbjct: 1    MDQNQR---SIAATTAAS---RGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPP--- 51

Query: 61   LRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQ 120
                                     NKTQKRVLALNRELPPRNEQFLI+FEQLQSQFPDQ
Sbjct: 52   -------------------------NKTQKRVLALNRELPPRNEQFLINFEQLQSQFPDQ 86

Query: 121  DQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMS 180
            DQLRSVTESVLIS+V+QCC+H PRAEF+LFALRSLCSIGYINWDTFLPSLLSSVSSAEMS
Sbjct: 87   DQLRSVTESVLISLVIQCCNHAPRAEFLLFALRSLCSIGYINWDTFLPSLLSSVSSAEMS 146

Query: 181  AGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETS 240
            AGQ  Q + A+S+ +  Q+ +LP+SS IPNSSN+Q SNP SPL SVHGIGSP QSAIE S
Sbjct: 147  AGQAGQTVSAISSMNSSQNVILPSSSAIPNSSNFQPSNPTSPLASVHGIGSPVQSAIEPS 206

Query: 241  VCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADI 300
            + A +SPVKSSD+S  GQ  T+RVN S RDNAI+SLRQLCCKIILTGLEF+LKP TH++I
Sbjct: 207  LLATVSPVKSSDISGNGQPSTSRVNLSSRDNAINSLRQLCCKIILTGLEFNLKPATHSEI 266

Query: 301  FYHMLNWLVTWDQKQQGIDESDG-KSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYEL 359
            F+HMLNWLV WDQ+Q G+DESD  +SWR +KALIEWL SCLDVIWLLVDE++CRVPFYEL
Sbjct: 267  FHHMLNWLVNWDQRQHGVDESDSVRSWRPEKALIEWLRSCLDVIWLLVDENKCRVPFYEL 326

Query: 360  LRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNI 419
            LR+GLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNI
Sbjct: 327  LRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNI 386

Query: 420  SVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWK 479
            SVEAA NLRYSPITYPSVLGEPLHGEDLA SIQRGSLDWERA+RCIRHA+R TPSPDWWK
Sbjct: 387  SVEAAANLRYSPITYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWK 446

Query: 480  RVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFF 539
            RVLLVAP YRNPA GPTPGAVF   MI EA IDRIVELLKLTNSEVNCW +WL+FSD+ F
Sbjct: 447  RVLLVAPSYRNPAHGPTPGAVFVSSMICEATIDRIVELLKLTNSEVNCWQEWLVFSDILF 506

Query: 540  FLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVET 599
            FL+KSGCIDFVDFVDKLV+RL +GD HILRTNH+TWLLAQIIRVE+V+ AL +D+RKVET
Sbjct: 507  FLMKSGCIDFVDFVDKLVARLTEGDQHILRTNHMTWLLAQIIRVEIVVNALTTDARKVET 566

Query: 600  TRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEW 659
            TRKI+SFHREDR +DPNNPQSILLDFISSCQNLRIWSLNTSTREYLN+EQLQKGKQIDEW
Sbjct: 567  TRKIMSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNSEQLQKGKQIDEW 626

Query: 660  WRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPN 719
            WR V+KGDRM+DYMNMDDRS+GMFWVVSYTM+QPACETV+NWLSSAGV+EL  G+++  N
Sbjct: 627  WRTVTKGDRMIDYMNMDDRSIGMFWVVSYTMSQPACETVVNWLSSAGVSEL-AGTSMQSN 685

Query: 720  ERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH 779
            ERLMVMREVNPLP+SLL+G SLNLCLKL  Q+EDS+F GQV+ SIAMVETY RL+L+APH
Sbjct: 686  ERLMVMREVNPLPISLLSGLSLNLCLKLVFQLEDSLFAGQVIPSIAMVETYCRLLLIAPH 745

Query: 780  SLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYR-----YQGKTKTLMYDITKI 834
            SLFRS FSHLAQR PSLL+K GVT LV EIVNYRLLPLYR     YQGK+K+LMYD+TKI
Sbjct: 746  SLFRSHFSHLAQRYPSLLSKPGVTLLVFEIVNYRLLPLYRQEHVEYQGKSKSLMYDVTKI 805

Query: 835  ISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIII 894
            +S LK KRGDHRV RLAENLCMNLILS RDFFS+KREGKG TEFTETLNR+TVI LAIII
Sbjct: 806  VSTLKGKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRVTVITLAIII 865

Query: 895  KTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQ 954
            KTRGIADADH+LYLQTMLEQIMATSQHTWSEKTLRYFPSLL DAL GRIDKRGL IQ WQ
Sbjct: 866  KTRGIADADHLLYLQTMLEQIMATSQHTWSEKTLRYFPSLLHDALSGRIDKRGLAIQEWQ 925

Query: 955  QAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLR 1014
            Q ETTVINQCTQLLSPSA+P YV TY++HSFPQHRQYLCAGAWILMQGHPENINS NL R
Sbjct: 926  QTETTVINQCTQLLSPSAEPAYVMTYINHSFPQHRQYLCAGAWILMQGHPENINSVNLAR 985

Query: 1015 VLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDI 1074
            VLREFSPEEVTSNIYTMVDVLLH I +ELQ GHSLQDLL K CAN++FFV  HELLPLDI
Sbjct: 986  VLREFSPEEVTSNIYTMVDVLLHRIQMELQHGHSLQDLLLKTCANLAFFVWGHELLPLDI 1045

Query: 1075 LLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALG 1134
            LLLAL DRDDDPHALRIVI+LLDRQELQQRVKL+CMNRGPPEHWL+SG+FKR+ELQKALG
Sbjct: 1046 LLLALTDRDDDPHALRIVISLLDRQELQQRVKLFCMNRGPPEHWLFSGVFKRLELQKALG 1105

Query: 1135 NHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSF 1194
            NHLSWK+RYPTFFDDIAARLLPVIPLIVYRL+ENDA+D ADRVLA YS FLAY+PLRF+F
Sbjct: 1106 NHLSWKDRYPTFFDDIAARLLPVIPLIVYRLVENDAIDPADRVLAMYSPFLAYHPLRFTF 1165

Query: 1195 VRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGL 1254
            VRDILAYFYGHLPGKLIVRILNV DLSKIPFSESFPQHISSSNPVMCPP +YFATLLLGL
Sbjct: 1166 VRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVMCPPPEYFATLLLGL 1225

Query: 1255 VNNVIPALNYNSKSGSTMDA---SLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYT 1311
            VNNV+P LN NSK GS  D    SLR P+ K+P TSQSGP+N+S+ +K FYQ QDPGTYT
Sbjct: 1226 VNNVLPPLNTNSKYGSLGDGLCNSLRNPNTKTPATSQSGPTNISDAQKAFYQIQDPGTYT 1285

Query: 1312 QLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSP 1371
            QLVLETAVIE+LSLPV+ASQIVSSLVQIVVNIQPTLIQ+SNG +GASN  GQGSVLPTSP
Sbjct: 1286 QLVLETAVIELLSLPVTASQIVSSLVQIVVNIQPTLIQSSNGLHGASNGAGQGSVLPTSP 1345

Query: 1372 SGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLY 1431
            SGGSTDSLGASRS PSVSGINT++FVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY
Sbjct: 1346 SGGSTDSLGASRSNPSVSGINTATFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHLQLY 1405

Query: 1432 MEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNL 1491
            MEASRIIKESWWL D KRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNL
Sbjct: 1406 MEASRIIKESWWLTDAKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNL 1465

Query: 1492 PQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVY 1551
            PQEWLEGTH I+KHLRPITSVAMLRI FRIMGPLLPRL NAH+LFNKTL LLLNTM DV+
Sbjct: 1466 PQEWLEGTHAIVKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNKTLLLLLNTMVDVF 1525

Query: 1552 GKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEV 1611
            G+N+ P  PVEASEIADLIDFLHHV+HYEGQGGPVQA+SKPR EVL L GRAAESLRP++
Sbjct: 1526 GRNSQPSTPVEASEIADLIDFLHHVIHYEGQGGPVQANSKPRAEVLALCGRAAESLRPDI 1585

Query: 1612 QHLLSHLKPDVNSSIYAATHPKMVQNPS 1639
            QHLLSHLKPDVNSSIYAATHPK+VQNPS
Sbjct: 1586 QHLLSHLKPDVNSSIYAATHPKLVQNPS 1613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356530772\|ref\|XP_003533954.1\| PREDICTED: uncharacterized protein LOC100798789 [Glycine max]	Back alignment and taxonomy information

>gi\|359472598\|ref\|XP_002281148.2\| PREDICTED: uncharacterized protein LOC100262719 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297845394\|ref\|XP_002890578.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata] gi\|297336420\|gb\|EFH66837.1\| hypothetical protein ARALYDRAFT_472581 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182788\|ref\|NP_001185071.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332192239\|gb\|AEE30360.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15220680\|ref\|NP_173737.1\| uncharacterized protein [Arabidopsis thaliana] gi\|395406782\|sp\|F4I4P3.1\|MED23_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 23 gi\|332192238\|gb\|AEE30359.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297737648\|emb\|CBI26849.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9295691\|gb\|AAF86997.1\|AC005292_6 F26F24.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|115448499\|ref\|NP_001048029.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|46390660\|dbj\|BAD16142.1\| unknown protein [Oryza sativa Japonica Group] gi\|113537560\|dbj\|BAF09943.1\| Os02g0732700 [Oryza sativa Japonica Group] gi\|222623623\|gb\|EEE57755.1\| hypothetical protein OsJ_08276 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242062622\|ref\|XP_002452600.1\| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor] gi\|241932431\|gb\|EES05576.1\| hypothetical protein SORBIDRAFT_04g028840 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1639
TAIR\|locus:2028040		1615	AT1G23230 "AT1G23230" [Arabido	0.931	0.945	0.707	0.0
DICTYBASE\|DDB_G0270434		1662	med23 "putative mediator compl	0.251	0.247	0.233	1.3e-13
FB\|FBgn0034795		1439	MED23 "Mediator complex subuni	0.308	0.351	0.211	6.5e-10
ZFIN\|ZDB-GENE-040724-82		1387	med23 "mediator complex subuni	0.393	0.465	0.199	4.5e-07
UNIPROTKB\|F1N8H3		1392	MED23 "Uncharacterized protein	0.392	0.461	0.201	3.9e-05
RGD\|1307671		1367	Med23 "mediator complex subuni	0.424	0.509	0.193	0.00035
UNIPROTKB\|Q5EB59		1367	Med23 "Mediator of RNA polymer	0.424	0.509	0.193	0.00035
UNIPROTKB\|Q9ULK4		1368	MED23 "Mediator of RNA polymer	0.398	0.477	0.199	0.00036

TAIR\|locus:2028040 AT1G23230 "AT1G23230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 5706 (2013.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 1113/1573 (70%), Positives = 1277/1573 (81%)

Query:    86 NKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRA 145
             NK+QKRV A NR+LPPRNEQFL+DFE LQSQF D +QLR++TESVLIS+VVQC +H PRA
Sbjct:    52 NKSQKRVHAPNRDLPPRNEQFLLDFELLQSQFNDPEQLRTITESVLISLVVQCSNHAPRA 111

Query:   146 EFILFALRSLCSIGYINWDTFXXXXXXXXXXAEMSAGQGSQAMPAVSATSLQQSGMLPTS 205
             EF+LFALR+LC I YINWDTF          AE S  QG QA  A + +S   S      
Sbjct:   112 EFLLFALRTLCRISYINWDTFLPSLLSSVSAAEASLSQGVQAAAATAGSSATSS-----Q 166

Query:   206 SGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVN 265
             S +P      S NP S LPS HGIGSP+ S ++ SV       ++  +    ++   R +
Sbjct:   167 SVVP-----VSVNPTSLLPSAHGIGSPSASEVK-SVENGQQIARAGQIV---RENAMRNS 217

Query:   266 SSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKS 325
               +R  A++SLRQL CKIIL G+E SLKPVTHA+IF +M+NWLV WD++  G ++S GKS
Sbjct:   218 QRIRAAAVNSLRQLSCKIILIGVESSLKPVTHAEIFQYMMNWLVNWDRRDLGTEDSVGKS 277

Query:   326 WRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHR 385
             WR +K L EWL SCLDVIWLLV+E   R+PFYELLR+GLQFIENIPDDEALFTLI+EIHR
Sbjct:   278 WRSEKTLAEWLRSCLDVIWLLVEEGESRIPFYELLRSGLQFIENIPDDEALFTLIMEIHR 337

Query:   386 RRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGE 445
             RRD MAMHM MLDQHLHCP+FGTHRI+SQ T N+  EA  +LR+SPITYPSVLGEPL+GE
Sbjct:   338 RRDAMAMHMLMLDQHLHCPSFGTHRIVSQITANVPPEAVPHLRHSPITYPSVLGEPLYGE 397

Query:   446 DLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQ-GPTPGAVFTYD 504
             DLA SI +GSLDWERA+RCIRHAIR TPSPDWWKRVL+VAPCYR   Q GP PGAVFT D
Sbjct:   398 DLAMSIPKGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPCYRPSTQAGPIPGAVFTSD 457

Query:   505 MISEAVIDRIVELLKLTNS-------------------EVNCWHDWLIFSDVFFFLVKSG 545
             MI EA+IDRIVELLKLTNS                   + NCW +WL+FSD+FFFL+KSG
Sbjct:   458 MICEAIIDRIVELLKLTNSGNDCFGIDLVSVTFPPLYADANCWQEWLVFSDIFFFLIKSG 517

Query:   546 CIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILS 605
             C DFVDF+DKLV RL   DNHILRTNHVTWLLAQIIRVELVM ALNSD++KVETTRKILS
Sbjct:   518 CTDFVDFIDKLVLRLNGVDNHILRTNHVTWLLAQIIRVELVMTALNSDAKKVETTRKILS 577

Query:   606 FHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSK 665
             FHREDR +DPNNPQS+LLDF+SSCQNLRIWSL+T+TR YLNNEQL KGKQIDEWWR  SK
Sbjct:   578 FHREDRNSDPNNPQSVLLDFVSSCQNLRIWSLSTTTRAYLNNEQLLKGKQIDEWWR--SK 635

Query:   666 GXXXXXXXXXXXXSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVM 725
             G            S+GMFWVVSYTMAQPACETV+NWLSSAG+ EL PG  L PN+R+M+ 
Sbjct:   636 GERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL-PG--LQPNDRVMMT 692

Query:   726 REVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSL 785
             +EV PLPMSLL+GFS+NLCLKLALQME+++F  QVV SIAMVETYTRL+L++PHS+FRS 
Sbjct:   693 QEVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSH 752

Query:   786 FSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDH 845
             FS LAQRN SLL+K GVT LVLEI+NYRLLPLYRYQGK+KTLMYD+TKIISALK KRGDH
Sbjct:   753 FSQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKGKRGDH 812

Query:   846 RVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHV 905
             R+ RLAENLCMNLILS RDFFS+KREGKG TEFTETLNRIT++ LAI IKTRGIAD DH+
Sbjct:   813 RIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADPDHM 872

Query:   906 LYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCT 965
             +YLQTMLEQI+ATSQHTWSEKT+R+FPSLLR+ L GR+DKRGL+IQAWQQAETTVINQCT
Sbjct:   873 VYLQTMLEQILATSQHTWSEKTMRHFPSLLRETLKGRVDKRGLSIQAWQQAETTVINQCT 932

Query:   966 QLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVT 1025
             QLLSPSA+P YV TYLSHSFPQHRQYLCAGA +LMQGH ENINS NL RVLRE SPEEVT
Sbjct:   933 QLLSPSAEPAYVSTYLSHSFPQHRQYLCAGACLLMQGHAENINSTNLARVLREVSPEEVT 992

Query:  1026 SNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHEXXXXXXXXXXXXXXXXX 1085
             +NIYT+VDVLLHH+HV+LQ+G SL+ +L KA AN++FF  THE                 
Sbjct:   993 ANIYTLVDVLLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDD 1052

Query:  1086 XHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPT 1145
              HAL I ++LL   +L  R+K YC NRG PEHWL + +FKR ELQKALGNHLSWK+RYPT
Sbjct:  1053 PHALIIAMSLLKTPDLLLRIKNYCQNRGSPEHWLVTQVFKRNELQKALGNHLSWKDRYPT 1112

Query:  1146 FFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGH 1205
             FFDDIAARLLPVIPL++YRLIEN+AM+ AD +L  +S FLAY+PLRF+FVRDILAYFYGH
Sbjct:  1113 FFDDIAARLLPVIPLVLYRLIENNAMEQADNLLLAHSHFLAYHPLRFTFVRDILAYFYGH 1172

Query:  1206 LPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPAL--- 1262
             LPGKL++R+L V DLSKIPFSESFPQ+IS +   +CPPLDYFA+LLL LVNNVIP L   
Sbjct:  1173 LPGKLVLRMLKVLDLSKIPFSESFPQYISPTGAPVCPPLDYFASLLLNLVNNVIPPLSSS 1232

Query:  1263 -NYNSKSGSTMD---ASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETA 1318
              N +S+SGS  D   +S R PH K+P TSQ GP+N SEG+K FYQ QDPGTYTQLVLETA
Sbjct:  1233 SNCSSRSGSMADILNSSARPPHGKTPGTSQPGPANASEGQKAFYQIQDPGTYTQLVLETA 1292

Query:  1319 VIEILSLPXXXXXXXXXXXXXXXXXXPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDS 1378
             VIEILSLP                   TLIQ+ NG +GA+N VGQGSVLPTSPSGGSTDS
Sbjct:  1293 VIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDS 1352

Query:  1379 LGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRII 1438
             + ASRST  + GINT+SFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFH+QLY+EA+R+ 
Sbjct:  1353 MSASRSTCLIPGINTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHVQLYLEAARVT 1412

Query:  1439 KESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEG 1498
             +E+WWL DGKRS GELDSAVGYAL+DPTWAAQDNTSTAIGNIVALLH+FFSNLPQEWL+G
Sbjct:  1413 RETWWLKDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDG 1472

Query:  1499 THVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPP 1558
             T+ II +LRP+TSVAMLR+VFRIMGPLLPRL + HTLFNKTL LLL+ + DV+GK     
Sbjct:  1473 TNAIITNLRPVTSVAMLRVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTT 1532

Query:  1559 APVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHL 1618
             APVEAS+IADLIDFLHH++HYEGQGG VQ SSKPRP++L L GRAAE+LRP+VQHLL+HL
Sbjct:  1533 APVEASQIADLIDFLHHIIHYEGQGGAVQTSSKPRPDILALIGRAAETLRPDVQHLLAHL 1592

Query:  1619 KPDVNSSIYAATH 1631
             K + NSSIYAA H
Sbjct:  1593 KTNPNSSIYAAAH 1605

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0270434 med23 "putative mediator complex subunit 23" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0034795 MED23 "Mediator complex subunit 23" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040724-82 med23 "mediator complex subunit 23" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8H3 MED23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1307671 Med23 "mediator complex subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5EB59 Med23 "Mediator of RNA polymerase II transcription subunit 23" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULK4 MED23 "Mediator of RNA polymerase II transcription subunit 23" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I4P3	MED23_ARATH	No assigned EC number	0.7225	0.9603	0.9746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1639
pfam11573		1341	pfam11573, Med23, Mediator complex subunit 23	5e-24

>gnl\|CDD\|221138 pfam11573, Med23, Mediator complex subunit 23	Back alignment and domain information

 Score =  110 bits (276), Expect = 5e-24
 Identities = 138/744 (18%), Positives = 247/744 (33%), Gaps = 127/744 (17%)

Query: 673  MNMDDRSVGMFWVVS--YTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNP 730
            +N D  +     ++   Y+         M  L           S    +     +    P
Sbjct: 478  LNFDMGNDYRLALLCNAYSTNTEYFSRPMPALIETLNGNSKNSSPFGLSYSRQAVNPFVP 537

Query: 731  LPMSLLTGFS-----------LNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLA-- 777
              + +L   +           L   +K A          +     A+VETY+RL++    
Sbjct: 538  FSVEVLDSLTVHSKMSLIHSILTHLIKQAQSKLPVPAVFETAP--ALVETYSRLLVYTEI 595

Query: 778  PHSLFRSLFSHLAQRNPSLLA----KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYD 830
                 R L   L               G    +LE+++YRL      YR Q     L + 
Sbjct: 596  ESLGIRGLLGQLLPLRSLNEVFKSQAWGQLHTLLEMLSYRLHHVHSHYRVQ----LLSHL 651

Query: 831  ITKIISALKVKRGDHRVLRLAENLCMNLILS----------QRDFFSLKREGKGSTEFTE 880
             +    A      + ++    E+  + LI             R     K+     +  +E
Sbjct: 652  HS---LASVNTTNNMQLHSCVESTALRLIQGLGSSEVQNQFSRYLRHCKQPKTIVSPESE 708

Query: 881  TLNRITVIALAIIIKTRGIADADHVLYLQT----MLEQIMATSQHTWSEKTLRYFPSLLR 936
             LN+  ++ LA  +K   I    +    QT     L  IM  + H W E TL  FP  L 
Sbjct: 709  ELNKALILTLARAMK---ITGTGNDPQSQTWCKDFLANIMQNTPHGWPEHTLSCFPPWLN 765

Query: 937  DALIGRIDKRGLTIQAWQQAET-TVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAG 995
            +       K+    +   QA   +V  +  +  S + +   +  +     P    +LC  
Sbjct: 766  EYF-----KQHNVPKEPNQALKKSVEEEYRRWNSMTNENDIIIRFGDPGTPP--LFLCLL 818

Query: 996  AWILMQGHPENIN-SANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLF 1054
              +LM    E  N S    ++L    P+ +  ++    D ++  +             + 
Sbjct: 819  FKMLMWNQHETDNISPVFYKILERIGPKALVVHLRKFCDYIVAEVSNSQDGNQ-----VN 873

Query: 1055 KACANISFFVLTHELLPLDILLLALIDRD-DDPHALR----IVITLLDRQELQQRVKLYC 1109
            K    I+  +    ++ +D L+L LI R  +   A        + LL   E + RV+ + 
Sbjct: 874  KCIDTINDMIWKFNIITIDRLVLCLILRPHEGNDAQICFQIAQLLLLKTNEFRNRVQEFV 933

Query: 1110 MNRGPPEHWLYSGLFKRV--------------ELQKALGNHLSWKERY-PTFFDDIAARL 1154
             N  PPEHW  S   K                E              + P +F ++  R 
Sbjct: 934  KNN-PPEHWKQSNYHKAHLKYHQKFPEKFAFEESASHPSQPDEPSNVHLPVYFGNVCLRF 992

Query: 1155 LPVIPLIVYRLIENDAMD---SADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG--- 1208
            LPV+ + ++R +E        + D +L   S    ++    +F+ + L Y+   L G   
Sbjct: 993  LPVLDIYIHRYLEQQGYKLSKTLDTILDHLSMLYKFHDRPITFLYNTLHYYERLLRGRDK 1052

Query: 1209 -KLIVRILNVFDLSKIPFS------ESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPA 1261
              L+  I+      +            +    SS      P L Y+  L+  +V      
Sbjct: 1053 KSLVSAIIGSLKDVRPANWALTEAYLKYNMQKSSDEVNW-PELSYYMELIGRMV------ 1105

Query: 1262 LNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIE 1321
                     T+D     P           P   ++ R  F +  +P  +    L    IE
Sbjct: 1106 --------DTIDGINPPP-----------PFVATDWR--FNEFPNPPAHA---LYVTCIE 1141

Query: 1322 ILSLPVSASQIVSSLVQIVVNIQP 1345
            +++LPVS  ++ ++L+ ++V   P
Sbjct: 1142 LMALPVSPEKVANALIDVIVKGYP 1165

Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice. Length = 1341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1639
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0
PF11573		1341	Med23: Mediator complex subunit 23; InterPro: IPR0	100.0
KOG1883		1517	consensus Cofactor required for Sp1 transcriptiona	100.0

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.5e-275  Score=2411.02  Aligned_cols=1400  Identities=23%  Similarity=0.241  Sum_probs=1291.3

Q ss_pred             CCccccccccccccccccccccccccchhhHhHHHHHHhhhcCCCCcCCCCccCCCCchhhhHhhhccccccCcchhhHH
Q 000338            1 MDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRLLIRGLVACCGGILLIVE   80 (1639)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (1639)
                      |||++  | .+.++..   +||.++|||+|++++|+|+||+|+.+|+|++.++|+++                       
T Consensus         1 ~~~s~--~-~~met~~---~s~~~e~~~v~~i~~~~~sl~~~~~~rek~r~~~s~~~-----------------------   51 (1517)
T KOG1883|consen    1 KPGSA--E-DTMETQD---TSSPQEVQKVNRIKEAFKSLVEENPTREKFRPLTSNIG-----------------------   51 (1517)
T ss_pred             CCcch--h-hhhhccc---cccHHHHhhHHHHHHHHHHHhhcCCcccccchhhcCCC-----------------------
Confidence            45554  7 6667777   88999999999999999999999999999999999999                       


Q ss_pred             HHHhhhhhhhHHhhccCCCCCCcchhhhhHHHHhccCCChhHHhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhhhccc
Q 000338           81 EFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGY  160 (1639)
Q Consensus        81 ~~~~~~~~~krv~a~~~~~~p~~eqf~~df~~l~~qf~~~~ql~~~te~~~~~~~~qc~~h~p~~~fll~~~~~l~~~~~  160 (1639)
                           ||||+||++-|+++||+||||++||+-++.+|.+.+|.|.++|++|+++|.||++||||++|++|   .||++||
T Consensus        52 -----d~t~~r~~~~n~~~qe~~eQ~ll~~~l~~~h~~~~~~~r~~~~~~l~~lVdq~l~~a~~~~~i~~---~LC~~~l  123 (1517)
T KOG1883|consen   52 -----DETALRIQFGNMMMQEKEEQSLLKELLKMVHGVAEKPDRVFLGTNLERLVDQLLRYARQKGAIST---NLCAEGL  123 (1517)
T ss_pred             -----chhhHHHhcCCCCCCchhHHHHHHHHHHHHhccCCccceehHHHHHHHHHHHhccccchhhhHHH---HHHHHHH
Confidence                 99999999999999999999999999999999999999999999999999999999999999999   8999999


Q ss_pred             ccccccHHHHhhhhhhhcccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccccc
Q 000338          161 INWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETS  240 (1639)
Q Consensus       161 ~~wd~~l~~ll~~~~~~e~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~sp~~~~~~~~  240 (1639)
                      |+  ++|+++.|+++.+|.+..|++++.....+    ...++|.                 -|.|+||+ +|..+..|+-
T Consensus       124 i~--t~l~~l~s~i~ae~~kli~~vi~~vdykG----vr~ilkv-----------------ilesa~~~-~P~svsv~~V  179 (1517)
T KOG1883|consen  124 IM--TSLFRLCSRIWAEKFKLINDVIPKVDYKG----VRNILKV-----------------ILESALRR-LPYSVSVEQV  179 (1517)
T ss_pred             hh--cchHHHHHHHHHHHHHHHhhhhhhhchhh----HHHHHHH-----------------HHHHHhcc-CCCccCHHHH
Confidence            99  99999999999999999999998544433    2233432                 46788888 7776554432


Q ss_pred             ccccccccccCCCcCCCC---cccccccccccchhhhhhhhhhHHHhhhhcccccccccHHHHHHHHHHHHHhccccccC
Q 000338          241 VCAAMSPVKSSDVSCTGQ---QFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQG  317 (1639)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~l~~l~c~i~l~~le~~lkp~t~~~i~~~~~~w~~~wd~~~~g  317 (1639)
                      -          .|-.+|+   ....|++...+.       ++.|++|+.|.+.  ||++|++++++|.+|+|+| ++..|
T Consensus       180 ~----------Qi~~a~~vir~i~dRns~llpa-------~~~~~eImrg~p~--~~l~h~~l~~~m~d~vv~f-R~~a~  239 (1517)
T KOG1883|consen  180 N----------QILAAENVIRHIVDRNSCLLPA-------YFTLSEIMRGMPK--QALMHWRLTELMADFVVHF-RPTAD  239 (1517)
T ss_pred             H----------HHHHHHHHHHHHHhccccccch-------HHhHHHHHhcCCc--ccccHHHHHHHHHHHHHHh-ccccc
Confidence            1          3444555   556788877776       8999999999998  9999999999999999999 88889


Q ss_pred             CCccCCccccchhHHHHHHHHHHHHHHHHhcCCCcccchHHHhhccccccccCCChhHHHHHHHHHhhchhhHHHHHhhh
Q 000338          318 IDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQML  397 (1639)
Q Consensus       318 ~~~~~~~~~~~~~~~~~w~~~cl~viw~lv~e~~~rvpfy~ll~~~~q~~e~~pddeal~~l~~e~hrrrd~~~~hm~~l  397 (1639)
                      +++.=+++|++++.+++| .+|||++|.|+-++ -|.|||+++|++.+++|++|||+|||++|||+|+|||.|||||+|.
T Consensus       240 ~~~i~Gr~~~~pi~l~~~-~~~l~~~W~l~~~~-~r~pf~~~~~slpy~~E~~~~~~all~~Ileqp~~RDv~~Ml~L~~  317 (1517)
T KOG1883|consen  240 LSSICGRGSVLPIVLHPG-FYPLTNSWELDGLT-LRFPFKGPHHSLPYRPELTETQLALLRYILEQPYSRDVMAMLSLHK  317 (1517)
T ss_pred             chhhcccccccccccccC-cccchhhheecccc-ccccccccccccCCChhhccchHHHHHHHHhhhcchhHHHHhhcCc
Confidence            988889999999999999 99999999998888 9999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccccccccccCcccccccccccccccccCCcccCCCcchhhhhhhccCCCccHHHHHHHHHHHhhcCCChhh
Q 000338          398 DQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDW  477 (1639)
Q Consensus       398 dqhlhcptf~t~~~~~~~~~~~~~~~~~~lr~s~~ty~~~~ge~l~ge~~a~~~~~~~~~~e~a~rc~~~~~r~~~s~d~  477 (1639)
                      |||+|||||++|||.++.+.++-.||+.++|.|||+       +|.||+++++|.+|+|   ++++|+||++|++|    
T Consensus       318 ~qk~rcp~~~e~lI~~~I~a~e~~EAe~~~~~spi~-------~l~w~~Ls~~liygvl---~~~~~~~h~v~~l~----  383 (1517)
T KOG1883|consen  318 PQKQRCPTLEEQLISLMICAMEMAEAESLPETSPIP-------RLQWDHLSSQLIYGVL---FQFLSFKHFVLVLH----  383 (1517)
T ss_pred             hhhhcCCcHHHHhHHHhhhccccccccccccCCCCC-------hhHHHHHHHHHHHHHH---HHHHhHHHHHHHHH----
Confidence            999999999999999999999999999999999999       9999999999999999   99999999999998    


Q ss_pred             hhhhheeccccCCCCC-CCCCcceeccchhhHHHHHHHHHHccccc--------------ccccchhhhHhhhhHHHHHH
Q 000338          478 WKRVLLVAPCYRNPAQ-GPTPGAVFTYDMISEAVIDRIVELLKLTN--------------SEVNCWHDWLIFSDVFFFLV  542 (1639)
Q Consensus       478 w~~vl~~ap~~~~~~~-~~~~~~~f~~~mi~ea~i~r~~~ll~~~~--------------~~~~~w~eWl~fsd~f~fl~  542 (1639)
                        ++|+++||||...| ++.+|+||+++|+|+|.+||++|++|++|              +.-+||++|+.|+|+|+||+
T Consensus       384 --~~L~~~~~~r~rdq~mwI~~qviss~i~~~al~D~~lev~kL~n~lf~~dlv~~~~pdin~~~~~r~la~~~iwi~L~  461 (1517)
T KOG1883|consen  384 --NKLKRCKLTRGRDQLMWILLQVISSSIQKNALDDAFLEVVKLFNLLFPGDLVWMGAPDINKALFARFLAAACIWIHLE  461 (1517)
T ss_pred             --HHHhhcCcccccchhheeeHHHhhhhhhhhhHHHHHHHHHHHHHhhcCcceeeecCCCcCHHHHHHHHHHhhhhhhhh
Confidence              99999999999999 99999999999999999999999999832              22389999999999999999


Q ss_pred             hcccccHHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhhhhccccccchhhhhhhcccccCCCCCCCCcchh
Q 000338          543 KSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSIL  622 (1639)
Q Consensus       543 ~~~~~df~~fi~kL~~r~~~gd~~~~~~nhv~wllaqii~~~~v~~~~~~~~~~v~t~~~ilsf~~~d~~~d~n~pqs~~  622 (1639)
                      |.||.||.|++++|        +|++|+ |+ |+|+|++|.+++|    +|..|++++++|+  |++|+..|+++|++.|
T Consensus       462 Kka~~Df~d~~~pl--------nh~Lr~-H~-~fLqq~vr~~~~m----~n~~kia~l~niy--~~~t~~~~~~~Pm~~L  525 (1517)
T KOG1883|consen  462 KKACTDFADKMPPL--------NHTLRS-HI-KFLQQGVRNFDSM----SNDAKIALLCNIY--RTSTNMEKFIVPMGQL  525 (1517)
T ss_pred             hhhccchhhccCcc--------cHHHHH-HH-HHHHHHHHhhhhc----cchHHHHHHHHHH--hccccccccCCcHHHH
Confidence            99999999999999        889998 88 9999999999999    7899999999999  9999999999999999


Q ss_pred             hhhhccccceEEEeeccchHHhhcHHHhhhhhhHHHHHHHhhcccccccccccCccceeeeeeehhcccchhhhHHHHhh
Q 000338          623 LDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWL  702 (1639)
Q Consensus       623 ~df~~s~q~l~iw~~n~~~~~~L~~~~~q~~k~~~eWw~~~~kg~~~~d~~n~DD~~iamL~vlssT~a~P~~Dtvm~~l  702 (1639)
                      ||+++||||+|||.+.+++|++++++++-+++ +|+||...     ||||+++||+.++++|++..++|||.|+...+|.
T Consensus       526 Le~i~~~~t~ri~~lst~~~A~~~~t~lpv~~-lDslt~~s-----kmsli~~~~~~l~sf~tv~l~~aq~~~~va~~~~  599 (1517)
T KOG1883|consen  526 LESISSNGTKRIPELSTKRMAVNSFTALPVEF-LDSLTVHS-----KMSLIHQCFQPLRSFSTVRLKSAQVKETVAKACE  599 (1517)
T ss_pred             HHHHhcCCccccCCCCcceeeecccchhhHHH-HHHHHHHH-----HHHHHHhcccccceeEEEEecccccchhhhhccc
Confidence            99999999999999999999999999999999 99999966     8999999999999999999999999998899999


Q ss_pred             ccCccccccCCCCCCCCccccccccccccchhhhhhhhHHHHHHHHHHHHHhhhcCCccCChhHHHHHHHhhhcccc-hh
Q 000338          703 SSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPH-SL  781 (1639)
Q Consensus       703 ~~~~v~e~ipG~~~~pn~~i~a~~~~~PLpmsLLDsLTvh~KmsLi~qI~~~lf~~~~vPSPAlVETYsRLLvyte~-sL  781 (1639)
                      ++++..+ .+                                                     .+|||+|+++|+|+ ++
T Consensus       600 s~~~~~~-~~-----------------------------------------------------~le~~arllv~~ei~sl  625 (1517)
T KOG1883|consen  600 SEDYEMA-VA-----------------------------------------------------LLETYARLLVYVEIESL  625 (1517)
T ss_pred             cchhhhh-hc-----------------------------------------------------ccchhhhhheeeeeecc
Confidence            7776665 33                                                     45666666666666 45


Q ss_pred             hHhh------------hhhhhhcCchhhh--hcchhhHHHHHhhccc---cccccccCcchhHHHHHHHHHHhhccccch
Q 000338          782 FRSL------------FSHLAQRNPSLLA--KVGVTPLVLEIVNYRL---LPLYRYQGKTKTLMYDITKIISALKVKRGD  844 (1639)
Q Consensus       782 ~~k~------------f~~LsQ~~psv~k--a~giL~~LLEilSYRL---~p~YRyqlks~~llhsL~~ii~~~~nq~q~  844 (1639)
                      ++|+            |  ++|.+|+|++  +|+.+|+++|++|||+   +++||+|+.+.  +|.+..+  ++.|++|.
T Consensus       626 ~isg~~~~~~~~~~~~F--lsqllptv~~~hay~~l~tl~~~~syr~hhiq~~~r~~ll~~--l~~~~lv--p~~~~~g~  699 (1517)
T KOG1883|consen  626 GISGEHQNVQAKDQCYF--LSQLLPTVFKHHAYSKLHTLVEMFSYRTHHIQNHYRVQLLSR--LHELFLV--PQTNWAGL  699 (1517)
T ss_pred             ccCchhhhhhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHHHhh--HHHHhhhh
Confidence            5555            6  8999999999  9999999999999999   89999999996  9988777  89999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcc---------ccccccCCCCcchhhHhHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Q 000338          845 HRVLRLAENLCMNLILSQRD---------FFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI  915 (1639)
Q Consensus       845 H~llr~lEs~~LRLIlsL~s---------f~~vq~~~~~ps~~SEELNR~LILTLARsiKitGiad~~~g~~~k~~L~~I  915 (1639)
                      |.   |+|++++|+|+++|+         ||..|.||++|++|||||||++|+||||++||||++|.++|+|||+||++|
T Consensus       700 h~---ci~s~a~rliTalk~ae~~~q~~~ffs~k~pg~~psa~seeLnR~~IlTlara~kvtggad~i~~vw~ktml~tI  776 (1517)
T KOG1883|consen  700 HL---CIESTALRLITALKSAEMQPQFARFFSDKVPGQVPSAESEELNRMLILTLARAVKVTGGADDIQGVWCKTMLPTI  776 (1517)
T ss_pred             hh---hHHHHHHHHHHHhcccchhHhHhhhcccCCCCcCcccccHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHH
Confidence            98   999999999999987         999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCchhhhccCc-HHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHhccCCCCChhhHhhhhcccCCCCCcchHH
Q 000338          916 MATSQHTWSEKTLRYFP-SLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCA  994 (1639)
Q Consensus       916 m~ntph~WpekTLr~FP-~~Lre~f~~~~D~~~l~~q~~qql~ttV~ee~rq~~Sms~E~~~V~~yi~hf~p~~~~fLC~  994 (1639)
                      +++|||+||+||++||| ..|.++|.+|    |.++++|||++|+|+||||+|+||+|||+||..|+.|.  .||+|||+
T Consensus       777 i~~t~h~W~ektls~FP~~aL~a~~~q~----~~~~en~qql~~~V~ne~r~~tSmsnen~~V~~yl~~~--~p~~~lCl  850 (1517)
T KOG1883|consen  777 INTTPHGWPEKTLSCFPKWALDAIFAQN----NSPAENTQQLKKDVENEYRMWTSMSNENDIVIHYLEDR--DPPLFLCL  850 (1517)
T ss_pred             HhcCCCCCchhhhhhCCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhccCC--CchhHHHH
Confidence            99999999999999999 6777777766    89999999999999999999999999995555555553  46999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHhhcChhHHHHhhhhhhcceeeehhhccccCCchhHHHHHHHhHhhhhhhhccccchhh
Q 000338          995 GAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDI 1074 (1639)
Q Consensus       995 l~~ml~e~~~e~I~~~~lyrVLe~isprevta~ir~fvDyLv~e~~~elq~g~~~Q~lv~kcv~~LndmIWkynIVpLDR 1074 (1639)
                      ++...|.+++||||+++ |||||++||||+++|+||||||||++++    .++++|++++||+++||+||||||++|+||
T Consensus       851 l~~~~m~~~teNIns~~-yrVLe~isprelva~~~tlvDyLvad~~----t~~~~e~~l~k~~~~la~mvwkf~vl~lDr  925 (1517)
T KOG1883|consen  851 LFAYKMVDETENINSEF-YRVLEKISPRELVAHGRTLVDYLVADAK----TSDCGEKTLKKCAKALALMVWKFNVLTLDR  925 (1517)
T ss_pred             HHHHHhcccccccCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhhh----cccchHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            96666766799999999 9999999999999999999999999887    577899999999999999999999999999


Q ss_pred             hhhhhccCCCCCc-----hhhHhhhhcCcHHHHHHHHHHHHcCCCCCccccccc------hhhhhhHHH---HhccC--C
Q 000338         1075 LLLALIDRDDDPH-----ALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGL------FKRVELQKA---LGNHL--S 1138 (1639)
Q Consensus      1075 LLL~LalR~dEgn-----aliIqlLLL~~~EFqqRV~~Fv~~~~spEHW~qs~~------fhrkfPEk~---lg~~l--s 1138 (1639)
                      ||||||+|++||+     ++|||++|+++ |||+||++||++ |+||||+ ++|      ||++|||++   ++++.  +
T Consensus       926 llL~Limr~~~~nda~vc~~Ia~~lLltp-df~~RI~~yck~-nsPeHwl-~~~~~k~~~yhka~pe~~~~e~~~qyd~~ 1002 (1517)
T KOG1883|consen  926 LLLCLIMRPHEGNDAQVCIQIAQLLLLTP-DFRNRIRWYCKQ-NSPEHWL-TEWIKKHVKYHKAYPEKEACELARQYDSS 1002 (1517)
T ss_pred             HHHHHhcccccCCcchhHHHHHHHHhcCH-HHHHHHHHHHhc-CCcchhh-HHHHHHHHHHHHhcchHHHHHHHHhcCCc
Confidence            9999999998887     55556666555 999999999997 9999999 888      899999965   55553  4


Q ss_pred             CCCCCCcchhhHHHhhcCchhHHHHHHHhcCc-hhhHHHHHHhhccccccCCccchhhhHhHHhhhcCCch-----HHHH
Q 000338         1139 WKERYPTFFDDIAARLLPVIPLIVYRLIENDA-MDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPG-----KLIV 1212 (1639)
Q Consensus      1139 ~~~~lPvYFGNVcLR~LPViDiVIhR~LE~~~-~k~letLL~~~g~LYkYHd~PvTFvY~tLhYy~~~L~~-----kLV~ 1212 (1639)
                      .++|||+||||||+|||||+|+|+|||||+++ .|.+++||+|+|.||||||+|+|||||||||||+||++     |||.
T Consensus      1003 ~~~~lPtyf~~v~~RlLPV~d~vlhr~lE~~~~~k~~~~lL~hls~lykfH~~pitflyntl~y~~~hL~~~p~kk~lv~ 1082 (1517)
T KOG1883|consen 1003 SNVHLPTYFGNVCLRLLPVMDQVLHRFLELQGVEKLLPQLLDHLSMLYKFHDRPITFLYNTLHYYEHHLRDRPLKKKLVL 1082 (1517)
T ss_pred             cccCCccHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHhhhhcCcchhhHHH
Confidence            47899999999999999999999999999999 69999999999999999999999999999999999944     8999


Q ss_pred             HHHhhcccCCCCCCcchhhhccCCCCCCCCChhHHHHHHHHHHhccccccccCCCCCCccccccCCCCCCCCCCCCCCCC
Q 000338         1213 RILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPS 1292 (1639)
Q Consensus      1213 ~ILg~Ld~~r~plSEsF~~y~~~~~~~~~P~~~Yy~~Ll~RLvnnvlp~~~~~~~~~~~~dgs~~~~~~~~p~~s~~~p~ 1292 (1639)
                      +|.++|++  ++|||+|.+|+++++..|||+++|||.||+||||++.+              ++              +|
T Consensus      1083 a~~~~lse--i~lSE~f~k~~~q~~ap~~pel~y~~sLi~rLvdt~~~--------------~l--------------~~ 1132 (1517)
T KOG1883|consen 1083 AIATQLSE--IRLSEAFEKFNHQKGAPWSPELDYYMSLIDRLVDTLDG--------------KL--------------TP 1132 (1517)
T ss_pred             HHhhhhhh--CccchhHHHHhccCCCCCCCcHHHHHHHHHHHHhhcCC--------------CC--------------CC
Confidence            99999988  66999999999999999999999999999999988843              21              23


Q ss_pred             CCCCCCcccccCCCCcchhhhhhhcceeecccCCCCHHHHHHHHHHhhhcc-----------------------------
Q 000338         1293 NVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNI----------------------------- 1343 (1639)
Q Consensus      1293 ~~s~~DwrF~EfpnPga~al~vL~tacIELLsLPvsp~~Vv~aLVdvvv~~----------------------------- 1343 (1639)
                      +|+.+||||+||+||++||+||   +|||+|++|++|..++++|+|++++.                             
T Consensus      1133 ~f~ncdwR~~e~~n~~a~al~~---~cvelma~~~sgp~~asalinv~~~~q~~~p~~~~~~na~~l~itaLP~~y~~~l 1209 (1517)
T KOG1883|consen 1133 PFVNCDWRFNEFPNPGAHALYV---TCVELMALPVSGPTVASALINVMQMKQHARPFNQLIVNATGLLITALPEPYWNAL 1209 (1517)
T ss_pred             CCcccccccccCCCcccccccc---chhhhcCCCCCcHhHHHHHHHHHhhCCCCCchhHHHHHHHHHHHhcCCcHHHHHH
Confidence            5666999999999999999985   77999999999998888877766544                             


Q ss_pred             -----------CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccccccccccccchhhHHH
Q 000338         1344 -----------QPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLI 1412 (1639)
Q Consensus      1344 -----------~~~l~q~~~~~~~~~~~~~~~~~~Ptsps~~~~~~~~~~~~~~~~~giN~s~~~~~~~~~~~~~s~l~I 1412 (1639)
                                 +.+.+|+++|+||.-+|+|+++++|++||+|.|++ +.++|+-.|+|||.-+|+||+ |||++++|..+
T Consensus      1210 ~d~lv~vivnp~~t~~t~~~gf~~~~fd~~~~s~l~~~ps~a~Tl~-a~s~s~~lh~si~~lsf~sr~-yt~~ll~cvkt 1287 (1517)
T KOG1883|consen 1210 HDRLVAVIVNPQSTGETANLGFEFILFDFYEESLLLNEPSRARTLN-AISHSVWLHCSISLLSFFSRE-YTERLLPCVKT 1287 (1517)
T ss_pred             HHHHHHHHcCccccchhhcCCCceeeccccchhccccCCccchhhH-HHHhHHHhhcchHHHHhhhHH-hHHHHHHHHHH
Confidence                       44567889999999999999999999999999999 999999999999999999999 99999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhcc-CccccCCCCCcccccccccccccCCcccccccCc-chhHHHHH-HHHHHHh
Q 000338         1413 QACGLLLAQLPPDFHMQLYMEASRIIKE-SWWLADGKRSLGELDSAVGYALLDPTWAAQDNTS-TAIGNIVA-LLHSFFS 1489 (1639)
Q Consensus      1413 NAiGLLLAaLP~~f~~~Ly~ei~~vik~-~w~l~d~k~s~~elDs~~~y~l~d~t~a~q~~t~-t~~~~ilA-L~Ha~~~ 1489 (1639)
                      +++||.+++||.+|+..+|.|..|..-+ .||++|++.+.+|.|  +||...||.|+.++|+. +.+|++++ .+|++|.
T Consensus      1288 e~~llyl~~L~~pfl~r~qle~~r~~~e~~~~l~d~l~s~~e~~--v~l~ymdpicd~~yn~ky~~~Gdivkn~~~a~f~ 1365 (1517)
T KOG1883|consen 1288 EKQLLYLLHLVGPFLQRKQLESQRENFEIVVLLYDKLGSVDEEG--VELVYMDPICDFLYNCKYFFAGDIVKNTAEAIFA 1365 (1517)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhcC--CceeecchHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999998 899999999999988  99999999999999988 99999999 9999999


Q ss_pred             cCChhhhhhHHHHHhhcCccchHHHHHHHHHHHhcchhhhhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCccchhhhhh
Q 000338         1490 NLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADL 1569 (1639)
Q Consensus      1490 h~~~~~L~~~~~~i~~LrPv~TeaqL~~~~rLvGP~L~R~~~eR~~~~k~l~lll~~L~~vVdKnsq~~~~vels~iD~I 1569 (1639)
                      +++.+|..++.-++.+.||+++.++...+++.+||.+||.....+.+.++...+.--..+++||..|..+.++....++.
T Consensus      1366 nLp~~l~drlrfi~~~s~p~~~~at~~~~~~s~~~~~pa~sS~q~p~~~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~ 1445 (1517)
T KOG1883|consen 1366 NLPPKLRDRLRFITHQSEPTEEQATPPEKENSPEESTPAVSSLQAPLLPSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSN 1445 (1517)
T ss_pred             cCCHHHHhhhhhhhhcccccccccccchhhcCcccCCcccccccCccCchhhhCCCccCCchhhhhhhhhHHHHHHHHhc
Confidence            99999999999888999999999999999999999999999998999999888888888999999888888999999999


Q ss_pred             hhhhceeeEEeccCCCCCCCCCCchhhhhhhhHhhhhCCHhHHHHhcccCCCCCCchhhccCcccc
Q 000338         1570 IDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMV 1635 (1639)
Q Consensus      1570 CDFLYHIYMFVG~g~~~qd~~K~~vE~l~l~~kiI~~LrP~LQ~rLrHL~~d~~ss~~aa~h~~~~ 1635 (1639)
                      .|+.+|+-+++||||.||.++|+.+.+|+++|+|-+-++|.+||.+.|.+..+++++||+.|..+.
T Consensus      1446 ~~~qqqlqhq~~n~~~vQt~s~p~p~~l~~~g~~~~~~~~y~qHmqqH~h~~~~~~~~a~~h~~n~ 1511 (1517)
T KOG1883|consen 1446 HPTQQQLQHQIPNMSMVQTMSPPYPGFLHPSGPVGHVPMQYGQHMQQHPHLPHHQQMPAPMHTMNP 1511 (1517)
T ss_pred             chHHHHHHHhccccceeeecCCCCCccccccccccccchhhHHHHHhccCCCccccCCcchhccCc
Confidence            999999999999999999999999999999999999999999999999999999999999997653

>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity	Back alignment and domain information

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1639
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 77.6 bits (190), Expect = 3e-14
 Identities = 96/636 (15%), Positives = 186/636 (29%), Gaps = 189/636 (29%)

Query: 830  DITK-IISA------LKVKRGDHRVLRLAENLC----------MNLILSQR-DFF--SLK 869
            D+ K I+S       +  K      LRL   L           +  +L     F    +K
Sbjct: 40   DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 870  REGKG----STEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQI---------- 915
             E +     +  + E  +R+       +     ++     L L+  L ++          
Sbjct: 100  TEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 916  MATSQHTW-------SEKTLRYFPSLLRDAL----IGRIDKRGLTIQAWQQAETTVINQC 964
            +  S  TW       S K            +    +   +     ++  Q+    +    
Sbjct: 158  VLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 965  TQLLSPSADPTY----VKTYLSHSFPQHRQY----LCAGAWILMQGHPENINSANLL--- 1013
            T     S++       ++  L     + + Y    L     +L      N+ +A      
Sbjct: 214  TSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLL-----VL-----LNVQNAKAWNAF 262

Query: 1014 ----RVLREFSPEEVTSNIYTMVDVL---------LHHIHVELQRGHSLQDLLFKACANI 1060
                ++L       +T+    + D L         L H  + L         L     + 
Sbjct: 263  NLSCKIL-------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC 313

Query: 1061 SFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLY 1120
                L  E+L  +   L++I                                   ++W +
Sbjct: 314  RPQDLPREVLTTNPRRLSIIAESIRDGLATW------------------------DNWKH 349

Query: 1121 SGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPV---IPLIV-----YRLIENDAMD 1172
                K   + ++  N L   E Y   FD ++  + P    IP I+     + +I++D M 
Sbjct: 350  VNCDKLTTIIESSLNVLEPAE-YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 1173 SADRVLATYS--------SFLAYYPLRFSFVRDILAYFYGHLPGKLIV---RILNVF--- 1218
              ++ L  YS        S ++   +       +   +  H   + IV    I   F   
Sbjct: 407  VVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 1219 DLSKIPFSESFPQHIS--SSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASL 1276
            DL      + F  HI     N      +  F  +           L++       ++  +
Sbjct: 463  DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------LDFR-----FLEQKI 507

Query: 1277 RAPHNKSPMTSQSGPSNVSEGRKEFYQN----QDPGTYTQLVLETAVIEILS-LPVSASQ 1331
            R  H+ +   +     N    + +FY+      DP  Y +L     V  IL  LP     
Sbjct: 508  R--HDSTAWNASGSILNTL-QQLKFYKPYICDNDP-KYERL-----VNAILDFLPKIEEN 558

Query: 1332 IVSS----LVQIVVNIQPTLIQTSNGPYGASNSVGQ 1363
            ++ S    L++I       L+      +  ++   Q
Sbjct: 559  LICSKYTDLLRI------ALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00