Citrus Sinensis ID: 000346
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1630 | 2.2.26 [Sep-21-2011] | |||||||
| P39706 | 426 | COMPASS component SWD1 OS | yes | no | 0.053 | 0.206 | 0.311 | 0.0005 |
| >sp|P39706|SWD1_YEAST COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 203 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI--GIIQVGSQPITSVAWLPMLRL 260
L F P ++L +G G L+ +D+ RP + ++ +PITS+AW P RL
Sbjct: 27 LRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITSIAWSPDGRL 86
Query: 261 LVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 293
L+T RD S+++W + P++P + F P
Sbjct: 87 LLTSSRDWSIKLWD---LSKPSKPLKEIRFDSP 116
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The COMPASS (Set1C) complex specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1630 | ||||||
| 449502736 | 1615 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.985 | 0.994 | 0.801 | 0.0 | |
| 449460596 | 1615 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.994 | 0.801 | 0.0 | |
| 255562613 | 1594 | nucleotide binding protein, putative [Ri | 0.977 | 0.999 | 0.799 | 0.0 | |
| 356511748 | 1595 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.996 | 0.764 | 0.0 | |
| 358345857 | 1604 | Vascular protein [Medicago truncatula] g | 0.982 | 0.998 | 0.757 | 0.0 | |
| 356563648 | 1595 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.996 | 0.761 | 0.0 | |
| 334185870 | 1614 | transducin/WD40 domain-containing protei | 0.965 | 0.975 | 0.738 | 0.0 | |
| 356496870 | 1583 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.997 | 0.749 | 0.0 | |
| 357518605 | 1644 | Vascular protein [Medicago truncatula] g | 0.980 | 0.972 | 0.724 | 0.0 | |
| 297816310 | 1579 | transducin family protein [Arabidopsis l | 0.955 | 0.986 | 0.728 | 0.0 |
| >gi|449502736|ref|XP_004161728.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226668 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 2668 bits (6915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1314/1639 (80%), Positives = 1443/1639 (88%), Gaps = 33/1639 (2%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+ HLDLRHVGRG KPLQPH AAFH +QAL+AVAIGTYI+E D LTG +I+S+DI
Sbjct: 1 MEWNTIHHLDLRHVGRG-LKPLQPHAAAFHSHQALVAVAIGTYIVECDALTGCKISSLDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+ VVRM+YSPTSGHAV+A+LEDCTIRSCDFD+EQ+ VLHSPEKKME IS DTEVHLALT
Sbjct: 60 GARVVRMSYSPTSGHAVIAMLEDCTIRSCDFDSEQTCVLHSPEKKMEQISSDTEVHLALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHPRLP+LYVAYADGLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHPRLPLLYVAYADGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDRRGTLLAWDVSIE+PSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSIEKPSMIG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPI SVAWLPMLRLLV+L +DG+LQVWKTRVI+NPNRPPMQA FFEPA IESID
Sbjct: 240 ITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPPMQAXFFEPAVIESID 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQQGGEAVYPLPR++AL+VHP+LNLA LLFAN +G D +KNRAAYTREGRKQLFA
Sbjct: 300 IPRILSQQGGEAVYPLPRIKALQVHPKLNLAALLFANMSGADTVKNRAAYTREGRKQLFA 359
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSASVLKEKLSS+G+SGILADHQLQAQLQEHHLKGHS LTISDIARKAFL+SH
Sbjct: 360 VLQSARGSSASVLKEKLSSLGASGILADHQLQAQLQEHHLKGHSSLTISDIARKAFLHSH 419
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
FMEGHAK+APISRLP+ITI DSKH LKD+PVCQPFHLELNFF++ENRVLHYPVRAFY+DG
Sbjct: 420 FMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKENRVLHYPVRAFYIDG 479
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
NL+AYNLCSG+DSIY+KLY++IPG VE++PK +V+S++Q+LFLV YEFSG TNEVVLY
Sbjct: 480 QNLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLVTYEFSGATNEVVLYW 539
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK-GVTLQEAADENNG 599
EN D+Q A+SK +TVKGRDAAFIGPNE+QFAILDDDKTGLALYIL G T QE ++N
Sbjct: 540 ENTDSQTANSKCTTVKGRDAAFIGPNENQFAILDDDKTGLALYILPGGKTSQE--NDNEK 597
Query: 600 VVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLS 659
V++ N ST+TN S++GP+ MFE+EVDRIF TP+ESTLMFA GDQIG+AKLVQG+R S
Sbjct: 598 VLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFASHGDQIGLAKLVQGHRNS 657
Query: 660 ARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASS 719
G+Y+ TK EG+KSIKLKV E++L+V WQET RG VAGVLTTQRVL+VSADLDILAS+
Sbjct: 658 TADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQRVLMVSADLDILAST 717
Query: 720 STKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLL 779
K SLLW+GPAL+FSTATAISVLGWDGKVR ILSISMP AVLVGALNDRLL
Sbjct: 718 YAK---------SLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLVGALNDRLL 768
Query: 780 LANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLR 839
LANPTEINPRQKK +EI+SCLVGLLEPLLIGFATMQQ FEQKLDLSEILYQITSRFDSLR
Sbjct: 769 LANPTEINPRQKKVVEIRSCLVGLLEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLR 828
Query: 840 ITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 899
ITPRSLDILA GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR
Sbjct: 829 ITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 888
Query: 900 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRL 959
DYP+CPPTS LFHRFRQLGYACIK+GQFDSAKETFEVIAD +SILDLFICHLNPSA+RRL
Sbjct: 889 DYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSILDLFICHLNPSALRRL 948
Query: 960 AQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1019
AQ+LEE+G + ELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN
Sbjct: 949 AQKLEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1008
Query: 1020 LKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVE-VTEKSLVKDFIP 1078
LK+IPQWELA EV+PYM+TDDG IPSI++DH+G+YLGS+KGRG+IVE V+E SLVK F P
Sbjct: 1009 LKAIPQWELAAEVMPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAP 1068
Query: 1079 AGAD-NKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEE 1137
AG + +K G+ + KS NKSK +SD DSK +LMGLETL Q SSAA DEQAKAEE
Sbjct: 1069 AGGNVDKATGLQTPLAKSISNKSKASSDGDSK-DNLMGLETLMKQ--SSAAADEQAKAEE 1125
Query: 1138 EFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLG 1197
EFKKTMYG A DGSSSDEE SKT+KL IRIRDKP+ S VDV KIKEAT QFKLGEG G
Sbjct: 1126 EFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKKIKEATMQFKLGEGFG 1185
Query: 1198 PPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSA-PGDLFGTESWVQPASVSKPA 1255
PP+ RTKSL + DL Q SQP +TAP SA P D FGT+S +QPA V +P+
Sbjct: 1186 PPISRTKSLTGSTPDLAQNLSQPPVTTA---LTAPIVSATPVDPFGTDSLMQPAPVLQPS 1242
Query: 1256 SAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANA 1315
+ G+ G +PIPEDFFQNTIPSLQ+AASLPPPGTYLS+ D S+GV S KV+ NQANA
Sbjct: 1243 TQGTGAGVAARPIPEDFFQNTIPSLQIAASLPPPGTYLSQLDPASRGVDSNKVSSNQANA 1302
Query: 1316 PAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ-TPFPYQSQ-VLPAQVPPS 1373
P + GLPDGGVPPQ + QPA+P ESIGLPDGGVPPQS GQ T P Q V PAQ
Sbjct: 1303 PEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSFGQPTAMPPSVQAVQPAQPSFP 1362
Query: 1374 TQPLDLSALGVPNSGDSGKSPANPASPP--TSVRPGQVPRGAAASVCFKTGLAHLEQNQL 1431
+QP+DLS LGVPNS DSGK P PP TSVRPGQVPRGAAAS+CFKTGLAHLEQN L
Sbjct: 1363 SQPIDLSVLGVPNSADSGKPP-----PPQATSVRPGQVPRGAAASICFKTGLAHLEQNHL 1417
Query: 1432 PDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAK 1491
DALSCFDEAFLALAKDHSRGAD+KAQATICAQYKIAVTLLQEI RLQKVQG S+A+SAK
Sbjct: 1418 SDALSCFDEAFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIGRLQKVQG-SSALSAK 1476
Query: 1492 DEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELR 1551
DEM RLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELL SKAPASKQDELR
Sbjct: 1477 DEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLFSKAPASKQDELR 1536
Query: 1552 SLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICG 1611
SLIDMCVQRGL NKSIDP EDPS FCAATLSRLSTIGYDVCDLCGAKFSAL++PGCIICG
Sbjct: 1537 SLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCGAKFSALTSPGCIICG 1596
Query: 1612 MGSIKRSDALAGPVPTPFG 1630
MGSIKRSDALA PVP+PFG
Sbjct: 1597 MGSIKRSDALAEPVPSPFG 1615
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460596|ref|XP_004148031.1| PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 2666 bits (6910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1313/1639 (80%), Positives = 1443/1639 (88%), Gaps = 33/1639 (2%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+ HLDLRHVGRG KPLQPH AAFH +QAL+AVAIGTYI+E D LTG +I+S+DI
Sbjct: 1 MEWNTIHHLDLRHVGRG-LKPLQPHAAAFHSHQALVAVAIGTYIVECDALTGCKISSLDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+ VVRM+YSPTSGHAV+A+LEDCTIRSCDFD+EQ+ VLHSPEKKME IS DTEVHLALT
Sbjct: 60 GARVVRMSYSPTSGHAVIAMLEDCTIRSCDFDSEQTCVLHSPEKKMEQISSDTEVHLALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHPRLP+LYVAYADGLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHPRLPLLYVAYADGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDRRGTLLAWDVSIE+PSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSIEKPSMIG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPI SVAWLPMLRLLV+L +DG+LQVWKTRVI+NPNRPPMQANFFEPA IESID
Sbjct: 240 ITQVGSQPIISVAWLPMLRLLVSLSKDGNLQVWKTRVILNPNRPPMQANFFEPAVIESID 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQQGGEAVYPLPR++AL+VHP+LNLA LLFAN +G D +KNRAAYTREGRKQLFA
Sbjct: 300 IPRILSQQGGEAVYPLPRIKALQVHPKLNLAALLFANMSGADTVKNRAAYTREGRKQLFA 359
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSASVLKEKLSS+ +SGILADH+LQAQLQEHHLKGHS LTISDIARKAFL+SH
Sbjct: 360 VLQSARGSSASVLKEKLSSLCASGILADHELQAQLQEHHLKGHSSLTISDIARKAFLHSH 419
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
FMEGHAK+APISRLP+ITI DSKH LKD+PVCQPFHLELNFF++ENRVLHYPVRAFY+DG
Sbjct: 420 FMEGHAKNAPISRLPIITILDSKHHLKDVPVCQPFHLELNFFSKENRVLHYPVRAFYIDG 479
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
NL+AYNLCSG+DSIY+KLY++IPG VE++PK +V+S++Q+LFLV YEFSG TNEVVLY
Sbjct: 480 QNLMAYNLCSGSDSIYKKLYTSIPGNVEFHPKFIVHSRKQRLFLVTYEFSGATNEVVLYW 539
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK-GVTLQEAADENNG 599
EN D+Q A+SK +TVKGRDAAFIGPNE+QFAILDDDKTGLALYIL G T QE ++N
Sbjct: 540 ENTDSQTANSKCTTVKGRDAAFIGPNENQFAILDDDKTGLALYILPGGKTSQE--NDNEK 597
Query: 600 VVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLS 659
V++ N ST+TN S++GP+ MFE+EVDRIF TP+ESTLMFA GDQIG+AKLVQG+R S
Sbjct: 598 VLEDNHSTETNNNSIRGPMPFMFETEVDRIFPTPLESTLMFASHGDQIGLAKLVQGHRNS 657
Query: 660 ARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASS 719
G+Y+ TK EG+KSIKLKV E++L+V WQET RG VAGVLTTQRVL+VSADLDILAS+
Sbjct: 658 TADGNYVPTKGEGRKSIKLKVNEIVLQVHWQETLRGLVAGVLTTQRVLMVSADLDILAST 717
Query: 720 STKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLL 779
K SLLW+GPAL+FSTATAISVLGWDGKVR ILSISMP AVLVGALNDRLL
Sbjct: 718 YAK---------SLLWIGPALVFSTATAISVLGWDGKVRTILSISMPYAVLVGALNDRLL 768
Query: 780 LANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLR 839
LANPTEINPRQKK +EI+SCLVGLLEPLLIGFATMQQ FEQKLDLSEILYQITSRFDSLR
Sbjct: 769 LANPTEINPRQKKVVEIRSCLVGLLEPLLIGFATMQQRFEQKLDLSEILYQITSRFDSLR 828
Query: 840 ITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 899
ITPRSLDILA GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR
Sbjct: 829 ITPRSLDILAGGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 888
Query: 900 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRL 959
DYP+CPPTS LFHRFRQLGYACIK+GQFDSAKETFEVIAD +SILDLFICHLNPSA+RRL
Sbjct: 889 DYPRCPPTSHLFHRFRQLGYACIKFGQFDSAKETFEVIADNDSILDLFICHLNPSALRRL 948
Query: 960 AQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1019
AQ+LEE+G + ELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN
Sbjct: 949 AQKLEEDGTDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1008
Query: 1020 LKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVE-VTEKSLVKDFIP 1078
LK+IPQWELA EV+PYM+TDDG IPSI++DH+G+YLGS+KGRG+IVE V+E SLVK F P
Sbjct: 1009 LKAIPQWELAAEVMPYMKTDDGSIPSIVADHIGVYLGSVKGRGSIVEVVSEDSLVKSFAP 1068
Query: 1079 AGAD-NKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEE 1137
AG + +K G+ + KS NKSK +SD DSK +LMGLETL Q SSAA DEQAKAEE
Sbjct: 1069 AGGNVDKATGLQTPLAKSISNKSKASSDGDSK-DNLMGLETLMKQ--SSAAADEQAKAEE 1125
Query: 1138 EFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLG 1197
EFKKTMYG A DGSSSDEE SKT+KL IRIRDKP+ S VDV KIKEAT QFKLGEG G
Sbjct: 1126 EFKKTMYGTANDGSSSDEENVSKTRKLHIRIRDKPVTSPTVDVKKIKEATMQFKLGEGFG 1185
Query: 1198 PPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSA-PGDLFGTESWVQPASVSKPA 1255
PP+ RTKSL + DL Q SQP A +TAP SA P D FGT+S +QPA V + +
Sbjct: 1186 PPISRTKSLTGSTPDLAQNLSQPPATTA---LTAPIVSATPVDPFGTDSLMQPAPVLQTS 1242
Query: 1256 SAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANA 1315
+ G+ G +PIPEDFFQNTIPSLQ+AASLPPPGTYLS+ D S+GV S KV+ NQANA
Sbjct: 1243 TQGTGAGVAARPIPEDFFQNTIPSLQIAASLPPPGTYLSQLDPASRGVDSNKVSSNQANA 1302
Query: 1316 PAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQ-TPFPYQSQ-VLPAQVPPS 1373
P + GLPDGGVPPQ + QPA+P ESIGLPDGGVPPQS GQ T P Q V PAQ
Sbjct: 1303 PEVNVGLPDGGVPPQASQQPALPFESIGLPDGGVPPQSLGQPTAMPPSVQAVQPAQPSFP 1362
Query: 1374 TQPLDLSALGVPNSGDSGKSPANPASPP--TSVRPGQVPRGAAASVCFKTGLAHLEQNQL 1431
+QP+DLS LGVPNS DSGK P PP TSVRPGQVPRGAAAS+CFKTGLAHLEQN L
Sbjct: 1363 SQPIDLSVLGVPNSADSGKPP-----PPQATSVRPGQVPRGAAASICFKTGLAHLEQNHL 1417
Query: 1432 PDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAK 1491
DALSCFDEAFLALAKDHSRGAD+KAQATICAQYKIAVTLLQEI RLQKVQG S+A+SAK
Sbjct: 1418 SDALSCFDEAFLALAKDHSRGADIKAQATICAQYKIAVTLLQEIGRLQKVQG-SSALSAK 1476
Query: 1492 DEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELR 1551
DEM RLSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELL SKAPASKQDELR
Sbjct: 1477 DEMGRLSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLFSKAPASKQDELR 1536
Query: 1552 SLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICG 1611
SLIDMCVQRGL NKSIDP EDPS FCAATLSRLSTIGYDVCDLCGAKFSAL++PGCIICG
Sbjct: 1537 SLIDMCVQRGLLNKSIDPQEDPSMFCAATLSRLSTIGYDVCDLCGAKFSALTSPGCIICG 1596
Query: 1612 MGSIKRSDALAGPVPTPFG 1630
MGSIKRSDALA PVP+PFG
Sbjct: 1597 MGSIKRSDALAEPVPSPFG 1615
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562613|ref|XP_002522312.1| nucleotide binding protein, putative [Ricinus communis] gi|223538390|gb|EEF39996.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2642 bits (6849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1304/1631 (79%), Positives = 1424/1631 (87%), Gaps = 38/1631 (2%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEWATVQHLDLRHVGRG +KPLQPH AAFHP QALIA AIGTYIIEFD LTGS+++SIDI
Sbjct: 1 MEWATVQHLDLRHVGRGVYKPLQPHAAAFHPTQALIAAAIGTYIIEFDALTGSKLSSIDI 60
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRMAYSPTSGH+VVAILEDCTIRSCDFDTEQ+ VLHSPEK+ME IS DTEVHLALT
Sbjct: 61 GAPAVRMAYSPTSGHSVVAILEDCTIRSCDFDTEQTCVLHSPEKRMEQISSDTEVHLALT 120
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI
Sbjct: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAV YTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR GTLLAWDVS ERP+MIG
Sbjct: 181 RAYNIHTYAVAYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRHGTLLAWDVSTERPNMIG 240
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPITS+AWLP LRLLVT+ +DG+LQVWKTRVI+NPNRPPMQANFFE A IESID
Sbjct: 241 ITQVGSQPITSIAWLPTLRLLVTVSKDGTLQVWKTRVILNPNRPPMQANFFESAGIESID 300
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQ GGE N TGGDN+KNRAAYTREGRKQLFA
Sbjct: 301 IPRILSQ-GGET------------------------NVTGGDNLKNRAAYTREGRKQLFA 335
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGH-SHLTISDIARKAFLYS 419
VLQSARGSSAS+LKEKLSS+GSSGILADHQLQAQLQEHHLKG+ S LTISDIARKAFLYS
Sbjct: 336 VLQSARGSSASILKEKLSSLGSSGILADHQLQAQLQEHHLKGNQSQLTISDIARKAFLYS 395
Query: 420 HFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVD 479
HAKSAPISRLPL++I D+KH LKDIP C P HLELNFFN+ENRVLHYPVRAFY+D
Sbjct: 396 ---VCHAKSAPISRLPLVSILDTKHHLKDIPACLPLHLELNFFNKENRVLHYPVRAFYID 452
Query: 480 GINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLY 539
G+NL+ YNLCSG D+IY+KLY+++PG VE++PKH+VYS++Q LFLV+YEFSG+TNEVVLY
Sbjct: 453 GVNLMGYNLCSGVDNIYKKLYTSVPGNVEFHPKHIVYSRKQHLFLVIYEFSGSTNEVVLY 512
Query: 540 RENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNG 599
EN ++Q A+SK +TVKGRDAAFIGP+E+QFA LD+DKTGLALYIL G +AA E N
Sbjct: 513 WENTESQPANSKGNTVKGRDAAFIGPSENQFAFLDEDKTGLALYILPG-GASKAAGEKNL 571
Query: 600 VVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLS 659
+V+ NQS +TN S++GP+Q MFESEVDRIFSTP+ESTLMFA G QIG+AKL+QGYRL
Sbjct: 572 LVEENQSVETNANSLRGPMQFMFESEVDRIFSTPLESTLMFAIHGSQIGLAKLLQGYRLP 631
Query: 660 ARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASS 719
GHY+ TK+EGKKSIKLK E++L+V WQET RGYVAG+LTTQRVL+VSADLDILASS
Sbjct: 632 TSDGHYIPTKTEGKKSIKLKKNEIVLQVHWQETARGYVAGILTTQRVLMVSADLDILASS 691
Query: 720 STKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLL 779
STKFDKG PSFRSLLWVGPALLFSTATA+ VLGWDG VR I+SISMP AVL+GALNDRLL
Sbjct: 692 STKFDKGRPSFRSLLWVGPALLFSTATAVRVLGWDGIVRTIVSISMPYAVLIGALNDRLL 751
Query: 780 LANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLR 839
ANPTEINPRQKKG+EI+SCLVGLLEPLLIGFATMQQ FEQKLDLSE+LYQITSRFDSLR
Sbjct: 752 FANPTEINPRQKKGVEIRSCLVGLLEPLLIGFATMQQTFEQKLDLSEVLYQITSRFDSLR 811
Query: 840 ITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSR 899
ITPRSLDILA+GPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRF+TALSVLKDEFLRSR
Sbjct: 812 ITPRSLDILARGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFATALSVLKDEFLRSR 871
Query: 900 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRL 959
DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYES+LDLFICHLNPSAMRRL
Sbjct: 872 DYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESMLDLFICHLNPSAMRRL 931
Query: 960 AQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 1019
AQ+LE+EGA+PELRRYCERILRVRS+GWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN
Sbjct: 932 AQKLEDEGADPELRRYCERILRVRSSGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTN 991
Query: 1020 LKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPA 1079
LKSIPQWELA EV+PYM+TDDG +P+II+DH+G+YLGSIKGRG +VEV E SLVK F A
Sbjct: 992 LKSIPQWELAAEVMPYMKTDDGTVPAIITDHIGVYLGSIKGRGNVVEVREGSLVKAFKSA 1051
Query: 1080 GADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEF 1139
D+KPNG+ + KS+ N+SKG + +SK SLMGLETL QN SS+A DEQAKA+EEF
Sbjct: 1052 -VDDKPNGLPNPLAKSSSNESKGLHEGNSKGDSLMGLETLIKQNASSSAADEQAKAQEEF 1110
Query: 1140 KKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGPP 1199
KKTMYGAA SSSDEE SK +KLQIRIRDKP+ S+ VDVNKIKEATK FKLGEGLGPP
Sbjct: 1111 KKTMYGAATS-SSSDEEEPSKARKLQIRIRDKPVTSATVDVNKIKEATKTFKLGEGLGPP 1169
Query: 1200 MRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGS 1259
MRTKSL GSQDL Q+ SQP A + + +SSA DLFGT+S+ Q A VS+P
Sbjct: 1170 MRTKSLT-GSQDLSQMLSQPPAMSANAPTASTSSSAAVDLFGTDSFTQLAPVSQPGPTVM 1228
Query: 1260 SVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAAD 1319
VG +PIPEDFFQNTIPSLQVAASLPPPGT L+K DQ S+ G+ PN A AA
Sbjct: 1229 GVGVAARPIPEDFFQNTIPSLQVAASLPPPGTLLAKLDQTSR---QGQTVPNPVGASAAA 1285
Query: 1320 SGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDL 1379
GLPDGGVPPQ Q A+ +ESIGLPDGGVPPQ+S Q +P S+QPLDL
Sbjct: 1286 IGLPDGGVPPQTT-QQAVSLESIGLPDGGVPPQASSPGAVLPQPHAQAPPIPVSSQPLDL 1344
Query: 1380 SALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFD 1439
S LGVPNS DSGK P ASPP+SVRPGQVPRGAAASVCFK GLAHLEQNQLPDALSCFD
Sbjct: 1345 SILGVPNSVDSGKPPVKDASPPSSVRPGQVPRGAAASVCFKVGLAHLEQNQLPDALSCFD 1404
Query: 1440 EAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSR 1499
EAFLALAKD+SRGAD+KAQATICAQYKIAVTLLQEI RLQKVQGPS A+SAKDEMARLSR
Sbjct: 1405 EAFLALAKDNSRGADIKAQATICAQYKIAVTLLQEISRLQKVQGPS-ALSAKDEMARLSR 1463
Query: 1500 HLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQ 1559
HLGSLPL KHRINCIRTAIKRNMEVQN+AY+KQMLELLLSKAP SKQDELRSL+DMCVQ
Sbjct: 1464 HLGSLPLLAKHRINCIRTAIKRNMEVQNFAYSKQMLELLLSKAPPSKQDELRSLVDMCVQ 1523
Query: 1560 RGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSD 1619
RG SNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALS PGCIICGMGSIKRSD
Sbjct: 1524 RGSSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSTPGCIICGMGSIKRSD 1583
Query: 1620 ALAGPVPTPFG 1630
ALAGPVP+PFG
Sbjct: 1584 ALAGPVPSPFG 1594
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511748|ref|XP_003524585.1| PREDICTED: uncharacterized protein LOC100805443 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2532 bits (6562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1251/1636 (76%), Positives = 1398/1636 (85%), Gaps = 47/1636 (2%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+QHLDLRHVGRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWTTLQHLDLRHVGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRM+YSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E IS DTEVH+ALT
Sbjct: 60 GAPAVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQISSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW+FVGDR+GTLL WDVS ERP M+G
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWIFVGDRQGTLLVWDVSTERPIMVG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPITSVAWLPMLRLLVTL +DG+L VW+TRV +NPN PP QANFFEPA+IESID
Sbjct: 240 IKQVGSQPITSVAWLPMLRLLVTLSKDGNLHVWETRVTVNPNGPPTQANFFEPAAIESID 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQQGGEA N T DN KN+A Y+REGRKQLFA
Sbjct: 300 IPRILSQQGGEA------------------------NATIADNSKNKARYSREGRKQLFA 335
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSASVLKEKLS++GSSG+LADHQLQAQLQEHHLKGH HLTISDIARKAFLYS
Sbjct: 336 VLQSARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHGHLTISDIARKAFLYS- 394
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
HAK +PISRLPLIT+ D+KH LKD PVC+PFHLELNFFN+ NRVLHYPVRA+Y+DG
Sbjct: 395 --VCHAKISPISRLPLITVLDNKHHLKDFPVCEPFHLELNFFNKANRVLHYPVRAYYMDG 452
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
+NL+A+NL SG+DSIYRKLY++IPG VEY K++++SK+Q LFLVVYEFSG TNEVVLY
Sbjct: 453 LNLMAHNLSSGSDSIYRKLYNSIPGNVEYRAKYLIHSKKQCLFLVVYEFSGATNEVVLYW 512
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 600
EN D Q+A+SKSSTVKGRDAAFIGPNE+QFAILDDDKTGL +Y L G QEA D N+ V
Sbjct: 513 ENSDAQVANSKSSTVKGRDAAFIGPNENQFAILDDDKTGLGVYTLPGGASQEAKD-NDKV 571
Query: 601 VDHN--QSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRL 658
+ N + +T+VGS++GP+ MFE+EVDRIFSTP++S+LMFA G+QIG+ K +QGYRL
Sbjct: 572 FEENPTATAETSVGSIRGPMPFMFETEVDRIFSTPLDSSLMFASHGNQIGIVKFIQGYRL 631
Query: 659 SARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 716
S GHY+ T SEGKKSIKLK E++L+V WQET RG+VAG+LTTQRVLIVSA LDIL
Sbjct: 632 STSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGHVAGILTTQRVLIVSAALDIL 691
Query: 717 ASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALND 776
A +S FDKGLPSFRSLLWVGPALLFSTATAIS+LGWDGKVR+ILSISMP AVLVG+LND
Sbjct: 692 AGTSANFDKGLPSFRSLLWVGPALLFSTATAISILGWDGKVRSILSISMPYAVLVGSLND 751
Query: 777 RLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD 836
RLLLANPTEINPRQKK +EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFD
Sbjct: 752 RLLLANPTEINPRQKKRVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFD 811
Query: 837 SLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 896
S+RITPRSLDILA+G PVCGDLAV+LSQ+GPQFTQV+RG+YA+KAL FSTAL++LKDEFL
Sbjct: 812 SMRITPRSLDILARGSPVCGDLAVALSQSGPQFTQVMRGVYAVKALHFSTALNILKDEFL 871
Query: 897 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 956
RSRDYPKCPPTS LFHRFRQLGYACI++GQFDSAKETFEVIAD ES+LDLFICHLNPSAM
Sbjct: 872 RSRDYPKCPPTSHLFHRFRQLGYACIRFGQFDSAKETFEVIADNESMLDLFICHLNPSAM 931
Query: 957 RRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 1016
RRLAQ+LEEEG + ELRRYC+RILR RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT
Sbjct: 932 RRLAQKLEEEGLDSELRRYCDRILRARSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 991
Query: 1017 PTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDF 1076
PT +K IPQWELA EV PYM+TDDG IPSII DH+G+YLGSIKGRG IVEV E SLVK F
Sbjct: 992 PTAVKDIPQWELAAEVTPYMKTDDGTIPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAF 1051
Query: 1077 IPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAE 1136
+P G +NK NG+ +SSVKS N+S ++K SLMGLE+L Q+ +S++ DEQAKAE
Sbjct: 1052 MPTGNENKVNGLEASSVKSISNQSNVVG--NTKGDSLMGLESLN-QHLASSSADEQAKAE 1108
Query: 1137 EEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGL 1196
EEFKK+MYGAAADGSSSDEEG SK KKL+I+IRDKPIASS VDVNKIKEAT+QFKLGEGL
Sbjct: 1109 EEFKKSMYGAAADGSSSDEEGVSKIKKLRIKIRDKPIASSTVDVNKIKEATRQFKLGEGL 1168
Query: 1197 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1256
PPMR++S GSQDLGQ+ S P G + T S PGDLFGT++ Q +S+P +
Sbjct: 1169 APPMRSRSSSGGSQDLGQILSLPPPTTGSASSTV---STPGDLFGTDALTQSEPISQPTT 1225
Query: 1257 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAP 1316
G + PIPEDFFQNTIPSLQVA SLPP GT+LSKY + GV K PNQ +A
Sbjct: 1226 GAVGGGLKAGPIPEDFFQNTIPSLQVAQSLPPAGTFLSKY---TPGVEISKTTPNQVSAS 1282
Query: 1317 AADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1376
A+ GL GGV PQ QPA+P+ESIGLPDGGVPPQSS Q QSQ+ +Q S+QP
Sbjct: 1283 EANVGL-QGGVSPQTIQQPAVPIESIGLPDGGVPPQSSAQAVVMPQSQLQASQAQISSQP 1341
Query: 1377 LDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALS 1436
LDLS LGVPNS DSGK P S +V PGQVPRGAAASVCFKTGLAHLEQN L DALS
Sbjct: 1342 LDLSILGVPNSADSGKPPQT-GSQQIAVHPGQVPRGAAASVCFKTGLAHLEQNNLSDALS 1400
Query: 1437 CFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMAR 1496
CFDEAFLALAK+ SRG D+KAQATICAQYKIAVTLL+EI RLQKV GPS AISAKDEMAR
Sbjct: 1401 CFDEAFLALAKEQSRGIDIKAQATICAQYKIAVTLLREIGRLQKVHGPS-AISAKDEMAR 1459
Query: 1497 LSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDM 1556
LSRHLGSLPL KHRINCIRTAIKRNM+VQNYAY+KQMLELLLSKAP SKQDE RSLID+
Sbjct: 1460 LSRHLGSLPLLAKHRINCIRTAIKRNMDVQNYAYSKQMLELLLSKAPPSKQDEFRSLIDL 1519
Query: 1557 CVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIK 1616
CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++ PGCI+CGMGSIK
Sbjct: 1520 CVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTVPGCIVCGMGSIK 1579
Query: 1617 RSDAL--AGPVPTPFG 1630
RSDAL AGPVP+PFG
Sbjct: 1580 RSDALAGAGPVPSPFG 1595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345857|ref|XP_003636991.1| Vascular protein [Medicago truncatula] gi|355502926|gb|AES84129.1| Vascular protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2527 bits (6550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1237/1632 (75%), Positives = 1399/1632 (85%), Gaps = 30/1632 (1%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW+T+QHLDLRH+GRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWSTLQHLDLRHIGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRM+YSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E IS DTEVH+ALT
Sbjct: 60 GAPAVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKSEQISSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIK DLKK IVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTLLAWDVS ERPSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTLLAWDVSTERPSMIG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPI SVA+LP LRLLVTL +DG+LQVW+TRV +NPNRP QA+FFEPA+IESID
Sbjct: 240 IKQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPSTQASFFEPAAIESID 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQQGGEAVYPLPR++A+E HP+ NLA L N T + KN+A+Y+REGRKQLFA
Sbjct: 300 IPRILSQQGGEAVYPLPRIKAIEFHPKSNLAAL---NVTSAETSKNKASYSREGRKQLFA 356
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSASV+KEKLS++GSSG+LADHQLQAQLQEHHLKGHS++TISDIARKAFLYSH
Sbjct: 357 VLQSARGSSASVIKEKLSALGSSGVLADHQLQAQLQEHHLKGHSNITISDIARKAFLYSH 416
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
FMEGH K +PISRLPLIT+ D+KH LKD PVC+P+HLELNFFN+ NRVLHYP RAFY+DG
Sbjct: 417 FMEGHMKISPISRLPLITVLDTKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDG 476
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
+NL+A++L SG+D IYRKLY++IPG VEY K++++SK+Q+LFLVVYEFSG+TNEVVLY
Sbjct: 477 LNLMAHSLSSGSDIIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYW 536
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 600
EN D Q +SKSSTVKGRDAAFIG NE+QFAILD+D+TGLALY L G T QE D N+ V
Sbjct: 537 ENTDVQTGNSKSSTVKGRDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKD-NDKV 595
Query: 601 VDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSA 660
+ NQ T+TNVGS++GP MFE+EVDRIFSTP++STLMFA G+QIG+ KL++GYRLS
Sbjct: 596 FEENQPTETNVGSIRGPTPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLST 655
Query: 661 RA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILAS 718
GHY+ TKS+GKKSIKLK E++L+V WQET RG VAG+LTT RVLIVSA LD+LA
Sbjct: 656 STANGHYISTKSDGKKSIKLKRNEIVLQVHWQETLRGNVAGILTTHRVLIVSAALDVLAG 715
Query: 719 SSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRL 778
+STK SLLWVGPALLFST A+S+LGWDGKVR +LSISMP AVLVGALNDRL
Sbjct: 716 TSTK---------SLLWVGPALLFSTTAAVSILGWDGKVRPVLSISMPYAVLVGALNDRL 766
Query: 779 LLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSL 838
LLA+PTEINPRQKKG+EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFDSL
Sbjct: 767 LLASPTEINPRQKKGVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFDSL 826
Query: 839 RITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRS 898
RITPRSLDILAKG PVCGDLAVSLSQ+GPQFTQV+RG+YA+KALRFSTALSVLKDEFLRS
Sbjct: 827 RITPRSLDILAKGSPVCGDLAVSLSQSGPQFTQVMRGVYAVKALRFSTALSVLKDEFLRS 886
Query: 899 RDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRR 958
RDYP+CPPTS LFHRFRQL YACI++GQFDSAKETFE IADYE +LDLFICHLNPSAMRR
Sbjct: 887 RDYPRCPPTSHLFHRFRQLAYACIRFGQFDSAKETFETIADYEGMLDLFICHLNPSAMRR 946
Query: 959 LAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT 1018
LAQ+LE+EG + ELRRYCERILR+RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT
Sbjct: 947 LAQKLEDEGLDSELRRYCERILRIRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT 1006
Query: 1019 NLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIP 1078
+K IPQWELA EV PYM+TDDG +PSII DH+G+YLGSIKGRG IVEV E SLVK F+P
Sbjct: 1007 TVKDIPQWELAAEVTPYMKTDDGTVPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAFMP 1066
Query: 1079 AGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEE 1138
AG DNK NG+ SSVKS N+ + K S MGLE+L Q +S+A DEQAKAEEE
Sbjct: 1067 AGNDNKVNGLELSSVKSISNQPNVVG--NPKGDSSMGLESLNKQLANSSA-DEQAKAEEE 1123
Query: 1139 FKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGP 1198
FKK+MYG AADGSSSDEEG SK K++ I+IRDKPI+SS VDVNKIKEATKQFKLGEGL P
Sbjct: 1124 FKKSMYG-AADGSSSDEEGASKIKRIHIKIRDKPISSSTVDVNKIKEATKQFKLGEGLPP 1182
Query: 1199 PMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAG 1258
PMRT+S GSQDLGQ+ S P A G I S P DLFGT++ QP +S+P +
Sbjct: 1183 PMRTRS-NSGSQDLGQILSLPPATTG---IPTATVSTPVDLFGTDASTQPEMISQPTTGA 1238
Query: 1259 SSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAA 1318
G PIPEDFFQNTI S+ VAASLPP GT+LSK+ + G+ + PNQA+A A
Sbjct: 1239 VGGGVAIGPIPEDFFQNTISSVHVAASLPPAGTFLSKF---TPGIQTSNTTPNQASATEA 1295
Query: 1319 DSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLD 1378
GL GGV Q QP +P+ESIGLPDGGVPPQS Q Q Q+ PAQ S+QPLD
Sbjct: 1296 GFGL-QGGVSNQAIQQPVVPMESIGLPDGGVPPQSMPQAVVTPQPQLQPAQPQISSQPLD 1354
Query: 1379 LSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCF 1438
LS LGVPNS DSGK P + S P SV PGQVPRGA ASVCFKTGLAHLE N L DALSCF
Sbjct: 1355 LSVLGVPNSADSGKLPQS-GSAPVSVHPGQVPRGAPASVCFKTGLAHLELNHLSDALSCF 1413
Query: 1439 DEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLS 1498
DE+FLALAK+ SRG+D+KAQATICAQYKIAVTLL+EI RLQ+V GPS AISAKDEMARLS
Sbjct: 1414 DESFLALAKEQSRGSDIKAQATICAQYKIAVTLLREIGRLQRVHGPS-AISAKDEMARLS 1472
Query: 1499 RHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCV 1558
RHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKAP++KQ+E RSL+D+CV
Sbjct: 1473 RHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPSNKQEEFRSLVDLCV 1532
Query: 1559 QRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRS 1618
QRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIKRS
Sbjct: 1533 QRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIKRS 1592
Query: 1619 DALAGPVPTPFG 1630
DA+A VP+PFG
Sbjct: 1593 DAIAASVPSPFG 1604
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563648|ref|XP_003550073.1| PREDICTED: uncharacterized protein LOC100804284 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2513 bits (6514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1246/1636 (76%), Positives = 1390/1636 (84%), Gaps = 47/1636 (2%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+QHLDLRHVGRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWTTLQHLDLRHVGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRM+YSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E I DTEVH+ALT
Sbjct: 60 GAPAVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQIFSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIKTDLKKPIVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW+FVGDRRGTLL WDVS ERPSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWIFVGDRRGTLLVWDVSTERPSMIG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPITSVAWLPMLRLL+TL +DG+L VW+TRV +NPN PP QANFFEPA+IESID
Sbjct: 240 IKQVGSQPITSVAWLPMLRLLITLSKDGNLHVWETRVTVNPNGPPTQANFFEPAAIESID 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQQGGEA N T DN KN+A Y+ +GRKQLFA
Sbjct: 300 IPRILSQQGGEA------------------------NATIADNSKNKARYSTDGRKQLFA 335
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSASVLKEKLS++GSSG+LADHQLQAQLQEHHLKGH HLTISDIARKAFLYS
Sbjct: 336 VLQSARGSSASVLKEKLSALGSSGVLADHQLQAQLQEHHLKGHGHLTISDIARKAFLYS- 394
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
HAK +PISRLPLIT+ D+KH LKD PVCQPFHLELNFFN+ NRVLHYPVRA+Y+DG
Sbjct: 395 --VCHAKISPISRLPLITVLDNKHHLKDFPVCQPFHLELNFFNKANRVLHYPVRAYYMDG 452
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
+NL+A+NL SG+DSIYRKLY++IPG VEY K++++SK+Q+LFLVVYEFSG TNEVVLY
Sbjct: 453 LNLMAHNLSSGSDSIYRKLYNSIPGNVEYRAKYLIHSKKQRLFLVVYEFSGATNEVVLYW 512
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 600
EN D Q+A+SKSSTVKGRDAAFIGPNE+QFAILDDDKTGL +Y L G QEA D N+ V
Sbjct: 513 ENSDAQVANSKSSTVKGRDAAFIGPNENQFAILDDDKTGLGVYTLPGGASQEAKD-NDKV 571
Query: 601 VDHN--QSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRL 658
+ N + +T+ GS++GP MFE+EVDRIFSTP++S+LMFA G+QIG+AKL+QGYRL
Sbjct: 572 FEENPTATAETSAGSIRGPTPFMFETEVDRIFSTPLDSSLMFASHGNQIGIAKLIQGYRL 631
Query: 659 SARA--GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 716
S GHY+ T SEGKKSIKLK E++L+V WQET RG+VAG+LTTQRVLIVSA LDIL
Sbjct: 632 STSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGHVAGILTTQRVLIVSAALDIL 691
Query: 717 ASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALND 776
A + FDKGLPSFRSLLWVGPALLFSTA AIS+LGWDGKVR+ILSISMP AVLVG+LND
Sbjct: 692 AGTYANFDKGLPSFRSLLWVGPALLFSTAAAISILGWDGKVRSILSISMPYAVLVGSLND 751
Query: 777 RLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD 836
RLLLANPTEINPRQKK +EIKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFD
Sbjct: 752 RLLLANPTEINPRQKKRVEIKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFD 811
Query: 837 SLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 896
SLRITPRSLDILA+G PVCGDLAV+LSQ+GPQFTQV+RG+YA+KALRFSTAL++LKDEFL
Sbjct: 812 SLRITPRSLDILARGSPVCGDLAVALSQSGPQFTQVMRGVYAVKALRFSTALNILKDEFL 871
Query: 897 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 956
RSRDYPKCPPTS LFHRFRQLGYACI++GQFDSAKETFEVIADYES+LDLFICHLNPSAM
Sbjct: 872 RSRDYPKCPPTSHLFHRFRQLGYACIRFGQFDSAKETFEVIADYESMLDLFICHLNPSAM 931
Query: 957 RRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 1016
RRLAQ+LEEEG + ELRRYC+RILR RSTGWTQGIFANF+AESMVPKGPEWGGGNWEIKT
Sbjct: 932 RRLAQKLEEEGLDSELRRYCDRILRARSTGWTQGIFANFSAESMVPKGPEWGGGNWEIKT 991
Query: 1017 PTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDF 1076
PT +K IPQWELA EV PYM+TDDG IPSII DH+G+YLGSIKGRG IVEV E SLVK F
Sbjct: 992 PTAVKDIPQWELAAEVTPYMKTDDGTIPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKVF 1051
Query: 1077 IPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAE 1136
+P G +NK NG+ +SSVKS +S S ++K SLMGLE+ Q SS+A DEQAKAE
Sbjct: 1052 MPTGNENKVNGLEASSVKSISKQSNVVS--NTKGDSLMGLESHNQQLASSSA-DEQAKAE 1108
Query: 1137 EEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGL 1196
EEFKK++YGAAADGSSSDEEG SK KKL+I+IRDKPIASS VDVNKIKEAT+QFKLGEGL
Sbjct: 1109 EEFKKSLYGAAADGSSSDEEGVSKMKKLRIKIRDKPIASSTVDVNKIKEATRQFKLGEGL 1168
Query: 1197 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1256
PPMR++S GSQDLGQ+ S P G + + S PGDLFGT++ Q +S+P +
Sbjct: 1169 APPMRSRSSSGGSQDLGQILSLPPPTTG---LASSTVSTPGDLFGTDALTQSEPISQPTT 1225
Query: 1257 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAP 1316
G + PIPEDFFQNTIPSLQVA +LPP GT+LS Y + GV K PNQ +A
Sbjct: 1226 GALGGGLKPGPIPEDFFQNTIPSLQVAQTLPPAGTFLSNY---TPGVEINKTTPNQVSAF 1282
Query: 1317 AADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1376
+ GL GGVPPQ QP +P+ESIGLPDGGVPPQSS Q QSQ+ AQ S+QP
Sbjct: 1283 QVNVGL-QGGVPPQTIQQPVVPIESIGLPDGGVPPQSSAQAVVMPQSQLQAAQAQISSQP 1341
Query: 1377 LDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALS 1436
LDLS LGV NS DSGK P A +V PGQVPRGA ASVCFKTGLAHLEQN L DALS
Sbjct: 1342 LDLSILGVTNSADSGKPPQTGAQ-QIAVHPGQVPRGAPASVCFKTGLAHLEQNNLSDALS 1400
Query: 1437 CFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMAR 1496
CFDEAFLALAK+ SR D+KAQATICAQYKIAVTLLQEI RLQKV GPS AISAKDEM R
Sbjct: 1401 CFDEAFLALAKEQSREIDIKAQATICAQYKIAVTLLQEIGRLQKVHGPS-AISAKDEMGR 1459
Query: 1497 LSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDM 1556
LSRHLGSLPL KHRINCIRTAIKRNM+VQNYAY+KQMLELLLSKAP SKQDE RSLID+
Sbjct: 1460 LSRHLGSLPLLAKHRINCIRTAIKRNMDVQNYAYSKQMLELLLSKAPPSKQDEFRSLIDL 1519
Query: 1557 CVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIK 1616
CVQRGL+NKSIDPLEDPSQFC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIK
Sbjct: 1520 CVQRGLTNKSIDPLEDPSQFCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIK 1579
Query: 1617 RSDAL--AGPVPTPFG 1630
RSDAL AGPVP+PFG
Sbjct: 1580 RSDALAGAGPVPSPFG 1595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185870|ref|NP_190628.6| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332645163|gb|AEE78684.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2471 bits (6404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1234/1670 (73%), Positives = 1385/1670 (82%), Gaps = 96/1670 (5%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEWATVQHLDLRHVGRG KPLQPH AAFHP+QA+IAVA+G++I+EFD LTG +IASIDI
Sbjct: 1 MEWATVQHLDLRHVGRGVSKPLQPHTAAFHPSQAVIAVAVGSHIMEFDALTGCKIASIDI 60
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
SP VRM YSPTS +AVVAILEDCTIRSCDF+TEQ+ VLHSPEK+ E IS DTEVHLA+T
Sbjct: 61 GSPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVT 120
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGF +RMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHPRLPVLYVAYA+GLI
Sbjct: 121 PLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHPRLPVLYVAYAEGLI 180
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTLLAWDVS ERP+MIG
Sbjct: 181 RAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTLLAWDVSTERPNMIG 240
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPITS++WLPMLR+LVT+ +DGSLQVWKTRVIINPNRP Q NFFEPA++ESID
Sbjct: 241 ITQVGSQPITSISWLPMLRVLVTVSKDGSLQVWKTRVIINPNRPSTQTNFFEPAAMESID 300
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IP+ILSQQGGEAVYPLPR++ LEVHP+LNLA L+FAN G +N +NRAA TREGRKQLFA
Sbjct: 301 IPKILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFANMVGNENTQNRAAQTREGRKQLFA 360
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSASVLKEKLSSMGSSGILA+HQLQA LQEH KG S LTISDIARKAFLYSH
Sbjct: 361 VLQSARGSSASVLKEKLSSMGSSGILAEHQLQALLQEH--KGQSQLTISDIARKAFLYSH 418
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
FMEGHAK+APISRLPLIT+ D+K QLKDIPVCQPFHLELNFFN+ NRVLHYPVR+FY++G
Sbjct: 419 FMEGHAKTAPISRLPLITVVDTKDQLKDIPVCQPFHLELNFFNKPNRVLHYPVRSFYIEG 478
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
+NL+A+NLCSG D+IY+KLY++IPG VEY+ KH+VYS+++ LFLVV+EFSG TNEVVLY
Sbjct: 479 LNLMAHNLCSGTDNIYKKLYTSIPGNVEYHSKHIVYSRKRHLFLVVFEFSGATNEVVLYW 538
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 600
EN +QL +SK ST KG DAAFIGPN+DQFAILD+DKTGL++YIL +T E +E N +
Sbjct: 539 ENTGSQLPNSKGSTAKGCDAAFIGPNDDQFAILDEDKTGLSMYILPKLTTMEE-NEKNLL 597
Query: 601 VDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSA 660
+ NQ + + +QGP Q MFE+EVDR+FSTPIESTLMFAC+G QIG+AKL QGYRLSA
Sbjct: 598 SEENQKKEADPSGIQGPQQFMFETEVDRVFSTPIESTLMFACNGTQIGLAKLFQGYRLSA 657
Query: 661 RAGHYLQTKSEGKKSIKLKVTEVMLK------------------------------VAWQ 690
GHY+ T+ EG+KSIKLK E+ L+ V WQ
Sbjct: 658 SDGHYISTQGEGRKSIKLKKHEIALQSFYSLPFNVVYIWPVLFEIKTIMFRKLTRHVQWQ 717
Query: 691 ETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISV 750
ET RGYVAG+LTTQRVL+VS LLWVGPALLFST TA+ +
Sbjct: 718 ETPRGYVAGILTTQRVLMVS----------------------LLWVGPALLFSTTTAVCL 755
Query: 751 LGWDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIG 810
LGWDGKVR ILSIS P A LVGALNDRLLLA+PT+I+P+QKKGIEIKSCLVGLLEPLLIG
Sbjct: 756 LGWDGKVRTILSISTPYAALVGALNDRLLLAHPTDISPKQKKGIEIKSCLVGLLEPLLIG 815
Query: 811 FATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFT 870
F+TMQQ FEQK+DLSEILYQIT+RFDSLRITPRSLDILA+ PVCGDLAVSL+QAGPQF
Sbjct: 816 FSTMQQTFEQKVDLSEILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQFN 875
Query: 871 QVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSA 930
QVLR YAIKALRFSTALSVLKDEFLRSRDYPKCPPTS LF RFRQLGYACIKYGQFDSA
Sbjct: 876 QVLRCAYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSLLFQRFRQLGYACIKYGQFDSA 935
Query: 931 KETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQG 990
KETFEVI DYES+LDLFICHLNPSAMRRLAQ+LEEE +PELRRYCERILRVRSTGWTQG
Sbjct: 936 KETFEVIGDYESMLDLFICHLNPSAMRRLAQKLEEESGDPELRRYCERILRVRSTGWTQG 995
Query: 991 IFANFAAESMVPKGPEWGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDH 1050
IFANFAAESMVPKGPEWGGGNWEIKTPT++KSIP+WELA EV+PYM+ +DG IPSI++DH
Sbjct: 996 IFANFAAESMVPKGPEWGGGNWEIKTPTDMKSIPKWELAGEVMPYMKNEDGTIPSIVADH 1055
Query: 1051 VGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKV 1110
+G+YLG +KGR +VE+ E SLV +KP G+ S+ K + +
Sbjct: 1056 IGVYLGCVKGRVNVVEIKEDSLV---------SKPGGL---SLLGKPVSDKPLALPAGES 1103
Query: 1111 GSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRD 1170
S+MGLE+L QN + DEQAKA EEFKKTMYGA DGSSSDEEG +K KKLQIRIR+
Sbjct: 1104 SSMMGLESLGKQNVA----DEQAKAAEEFKKTMYGATGDGSSSDEEGVTKPKKLQIRIRE 1159
Query: 1171 KPIASSAVDVNKIKEATKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNIT 1229
KP S+ VDVNK+KEA K FKLG+GLG M RTKS+ GSQDLGQ+ SQPS++ T
Sbjct: 1160 KP-TSTTVDVNKLKEAAKTFKLGDGLGLTMSRTKSINAGSQDLGQMLSQPSSS-TVATTT 1217
Query: 1230 APAS-SAPGDLFGTESWV-QPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLP 1287
AP+S SAP D F SW QP VS+PA G + PIPEDFFQNTIPS++VA +LP
Sbjct: 1218 APSSASAPVDPFAMSSWTQQPQPVSQPAPPGVAA-----PIPEDFFQNTIPSVEVAKTLP 1272
Query: 1288 PPGTYLSKYDQVSQGVASGKVAPNQA-NAPAADSGLPDGGV----PPQIAPQPAIPVESI 1342
PPGTYLSK DQ ++ + + PNQA N P D GLPDGGV P Q + QP P +++
Sbjct: 1273 PPGTYLSKMDQAARAAIAAQGGPNQANNTPLPDIGLPDGGVPQQYPQQTSQQPGAPFQTV 1332
Query: 1343 GLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPT 1402
GLPDGGV Q +P Q+QV P+QVP STQPLDLS LGVPN+GDSGK P P SPP
Sbjct: 1333 GLPDGGVRQQ------YPGQNQV-PSQVPVSTQPLDLSVLGVPNTGDSGKPPGQPQSPPA 1385
Query: 1403 SVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATIC 1462
SVRPGQVPRGAAA VCFKTGLAHLEQNQLPDALSCFDEAFLALAKD SRGAD+KAQATIC
Sbjct: 1386 SVRPGQVPRGAAAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDQSRGADIKAQATIC 1445
Query: 1463 AQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRN 1522
AQYKIAVTLL+EILRLQ+VQG S A+SAKDEMARLSRHL SLPL KHRINCIRTAIKRN
Sbjct: 1446 AQYKIAVTLLREILRLQRVQGAS-ALSAKDEMARLSRHLASLPLLAKHRINCIRTAIKRN 1504
Query: 1523 MEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLS 1582
MEVQNY Y+KQMLELLLSKAPASKQ+ELR L+D+CVQRG SNKSIDPLEDPSQ C+ATLS
Sbjct: 1505 MEVQNYGYSKQMLELLLSKAPASKQEELRGLVDLCVQRGTSNKSIDPLEDPSQLCSATLS 1564
Query: 1583 RLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALAGPVP--TPFG 1630
RLSTIGYDVCDLCGAKF+ALS+PGCIICGMGSIKRSDALAGP P TPFG
Sbjct: 1565 RLSTIGYDVCDLCGAKFAALSSPGCIICGMGSIKRSDALAGPAPVSTPFG 1614
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496870|ref|XP_003517288.1| PREDICTED: uncharacterized protein LOC100787845 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2466 bits (6392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1225/1634 (74%), Positives = 1373/1634 (84%), Gaps = 55/1634 (3%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW T+QHLDLRHVGRG +PLQPH A FHP+QAL+AVAIGT+I+EFD LTGS+I+++DI
Sbjct: 1 MEWTTLQHLDLRHVGRG-VRPLQPHAATFHPHQALVAVAIGTFIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+PVVRM YSPT GH V+AIL+D TIRSCDFD EQ+ VLHSPEKK E IS DTEVHLALT
Sbjct: 60 GAPVVRMLYSPTRGHTVIAILQDSTIRSCDFDFEQTCVLHSPEKKTEQISSDTEVHLALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQ +VFFGFH+R+SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQSIVFFGFHKRLSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL GAGAFAFHPTLEW+FVGDRRGTLLAWDVS ERPS+IG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLNGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTERPSIIG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
+ QVGSQPITSV+WL L LLVTL RDGSLQVWKTRVI+NPN PPM A+FF PA+IES+D
Sbjct: 240 LTQVGSQPITSVSWLTTLCLLVTLSRDGSLQVWKTRVIVNPNTPPMPASFFVPAAIESLD 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFA 360
IPRILSQQGGEA N T GD +KN+ Y+RE RKQLF+
Sbjct: 300 IPRILSQQGGEA------------------------NVTSGDPLKNKTTYSRERRKQLFS 335
Query: 361 VLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSH 420
VLQSARGSSAS LKEKLS++GSSG+LADHQLQAQLQEHHLKGH+HLTI DI RKAFLYS
Sbjct: 336 VLQSARGSSASTLKEKLSALGSSGVLADHQLQAQLQEHHLKGHNHLTILDIGRKAFLYS- 394
Query: 421 FMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDG 480
+ KSAPISRLPLITI D+KH LKD PV QPFHLELNFFN+ENRVLHYPVRAFYVDG
Sbjct: 395 --VCNTKSAPISRLPLITILDTKHYLKDFPVIQPFHLELNFFNKENRVLHYPVRAFYVDG 452
Query: 481 INLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYR 540
NL+A+NL SG+DSIY+KLY++IP +VEY K+++YSK+Q LFLV YEFSGTTNEVVLYR
Sbjct: 453 PNLMAHNLSSGSDSIYKKLYNSIPRSVEYQAKYLIYSKKQHLFLVAYEFSGTTNEVVLYR 512
Query: 541 ENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGV 600
EN D ++++SKSSTVKGRDAAFIGPNE+QFAILDDDKTGLA+Y L G QE EN+ +
Sbjct: 513 ENTDAEISNSKSSTVKGRDAAFIGPNENQFAILDDDKTGLAVYTLPGGASQET-KENDKL 571
Query: 601 VDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSA 660
+ NQ T+T VGS+QGP MFE+EVDRI+STP++STLMFA G+QIG+ KL+QGYRLS
Sbjct: 572 FEENQPTETTVGSIQGPTPFMFETEVDRIYSTPLDSTLMFASHGNQIGLVKLIQGYRLST 631
Query: 661 RA----GHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDIL 716
+ GHY+ TKSEGKKSI LK E++L+V WQET RG+VAG+LTTQRVLIVSA DIL
Sbjct: 632 SSSKSNGHYISTKSEGKKSINLKRNEIVLQVYWQETLRGHVAGILTTQRVLIVSAAFDIL 691
Query: 717 ASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALND 776
A +ST FDKGLPSFRSLLWVGPALLFSTATAIS+LGWDGKVR ILS S+P AVLVGALND
Sbjct: 692 AGTSTNFDKGLPSFRSLLWVGPALLFSTATAISILGWDGKVRTILSTSVPYAVLVGALND 751
Query: 777 RLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFD 836
RLLLA+PTEINP+QKKG+EIKSCLVGLLEPLLIGFATMQQ FEQKLDLSEILYQITSRFD
Sbjct: 752 RLLLASPTEINPKQKKGVEIKSCLVGLLEPLLIGFATMQQSFEQKLDLSEILYQITSRFD 811
Query: 837 SLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL 896
SLRITPRSLDILA+G PVCGDLAVSLSQ GP FTQV+RG+YA+KALRFS+ALSVLKDEFL
Sbjct: 812 SLRITPRSLDILARGSPVCGDLAVSLSQLGPHFTQVMRGVYAVKALRFSSALSVLKDEFL 871
Query: 897 RSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAM 956
RSRDYP+CPPT LFHRFRQLGYACI++GQFD AKETFEV ADY+S+LDLFICHLNPSAM
Sbjct: 872 RSRDYPRCPPTCHLFHRFRQLGYACIRFGQFDRAKETFEVTADYKSMLDLFICHLNPSAM 931
Query: 957 RRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKT 1016
RRLAQ+LE+E + ELRR+CE ILRVRS+GWTQGIFANFAAESMVPKGPEWGGG+WEIKT
Sbjct: 932 RRLAQKLEDEDLDSELRRHCEWILRVRSSGWTQGIFANFAAESMVPKGPEWGGGDWEIKT 991
Query: 1017 PTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDF 1076
PTN K IPQWELA EV+PYM+TDDG IPSII DH+G+Y+GSIKGRG +VEV E SLVK
Sbjct: 992 PTNAKDIPQWELAAEVLPYMKTDDGAIPSIILDHIGVYVGSIKGRGNVVEVREDSLVKAV 1051
Query: 1077 IPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAE 1136
IPAG D K NG+ SSVK N+ VD+ G + L + +S++ DEQAKA
Sbjct: 1052 IPAGNDFKANGLEISSVKPISNQR-----VDNSQGGPLSLN----KQLASSSTDEQAKAA 1102
Query: 1137 EEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGL 1196
EEFKK+MYGAAA SSSDEEG SKTKK+++RIRDKPIASS VDVNKIKEAT +FKL GL
Sbjct: 1103 EEFKKSMYGAAAADSSSDEEGVSKTKKIRVRIRDKPIASSTVDVNKIKEATSKFKLSGGL 1162
Query: 1197 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1256
P R++S GSQDL Q+ S P AA G ++A S PGDLFGT+ + QP +S+P +
Sbjct: 1163 -TPTRSRSFTSGSQDLDQILSLPPAATG---VSARTVSTPGDLFGTDVFTQPEPISQPTT 1218
Query: 1257 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAP 1316
+S G + PIPEDFFQNTI SLQ AASL P GTYLSK+ + G SGK NQ +A
Sbjct: 1219 GVASRGNKVGPIPEDFFQNTISSLQAAASLAPAGTYLSKF---AAGAESGKETRNQVSAS 1275
Query: 1317 AADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQP 1376
AD L G VPPQ+ QPA+P+ES GLPDGGVPPQSS Q SQ+ Q P S+QP
Sbjct: 1276 KADVSL-QGDVPPQVVQQPAVPIESGGLPDGGVPPQSSAQASAMPPSQL---QEPTSSQP 1331
Query: 1377 LDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALS 1436
LDLS GVPN+ DSGK P SPP+SVRPGQVPR AAASVCFKTGLAHLE N L DALS
Sbjct: 1332 LDLSIFGVPNASDSGKPPQT-GSPPSSVRPGQVPREAAASVCFKTGLAHLELNHLSDALS 1390
Query: 1437 CFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMAR 1496
CFDE+FLALAK+ SRG+D+KAQATICAQYKI VTLLQEI RLQKV GPS AISAKDEMAR
Sbjct: 1391 CFDESFLALAKEQSRGSDIKAQATICAQYKITVTLLQEIGRLQKVHGPS-AISAKDEMAR 1449
Query: 1497 LSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDM 1556
LSRHLGSLPL KHRINCIRTAIKRNMEVQNYAY+KQMLELLLSKAP SKQ+E RSLID+
Sbjct: 1450 LSRHLGSLPLLAKHRINCIRTAIKRNMEVQNYAYSKQMLELLLSKAPPSKQEEFRSLIDL 1509
Query: 1557 CVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIK 1616
CVQRGL+NKSIDPLEDPSQFCA TLSRLSTIGYDVCDLCG+KFSA++APGCIICGMGSIK
Sbjct: 1510 CVQRGLTNKSIDPLEDPSQFCAFTLSRLSTIGYDVCDLCGSKFSAVTAPGCIICGMGSIK 1569
Query: 1617 RSDALAGPVPTPFG 1630
RSDALAGPVP+PFG
Sbjct: 1570 RSDALAGPVPSPFG 1583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518605|ref|XP_003629591.1| Vascular protein [Medicago truncatula] gi|355523613|gb|AET04067.1| Vascular protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2427 bits (6289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1214/1675 (72%), Positives = 1379/1675 (82%), Gaps = 76/1675 (4%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEW+T+QHLDLRH+GRG +PLQPH A+FHP+QAL+AVAIGTYI+EFD LTGS+I+++DI
Sbjct: 1 MEWSTLQHLDLRHIGRGV-RPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDI 59
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
+P VRMAYSPTSGH V+AIL+DCTIRSCDFD EQ+ VLHSPEKK E IS DTEVH+ALT
Sbjct: 60 GAPAVRMAYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKSEQISSDTEVHMALT 119
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGFH+RMSVTVVGTVEGGR PTKIK DLKK IVNLACHPRLPVLYVAYA+GLI
Sbjct: 120 PLQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHPRLPVLYVAYAEGLI 179
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTLLAWDVS ERPSMIG
Sbjct: 180 RAYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTLLAWDVSTERPSMIG 239
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPI SVA+LP LRLLVTL +DG+LQVW+TRV +NPNRP QA+FFEPA+IESID
Sbjct: 240 IKQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPSTQASFFEPAAIESID 299
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFA-----NFTGGDNIKNRAAYTREGR 355
IPRILSQQGGEAVYPLPR++A+E HP+ NLA L+FA N T + KN+A+Y+REGR
Sbjct: 300 IPRILSQQGGEAVYPLPRIKAIEFHPKSNLAALVFAVACYVNVTSAETSKNKASYSREGR 359
Query: 356 KQLFAVLQSARGSSASVLKEKLSSMG------SSGIL-----------------ADHQLQ 392
KQLFAVLQSARGSS ++ L S+ S GI+ H L
Sbjct: 360 KQLFAVLQSARGSSDMLMVRVLCSICYKGKTFSLGIIWGVSRPSASSSTPRASSKRHCLL 419
Query: 393 AQLQEHHLK-----------GHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFD 441
+++ EH HS++TISDIARK HFMEGH K +PISRLPLIT+ D
Sbjct: 420 SEI-EHDTYICLWGSFAACCNHSNITISDIARK-----HFMEGHMKISPISRLPLITVLD 473
Query: 442 SKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYS 501
+KH LKD PVC+P+HLELNFFN+ NRVLHYP RAFY+DG+NL+A++L SG+D IYRKLY+
Sbjct: 474 TKHHLKDFPVCEPYHLELNFFNKANRVLHYPSRAFYMDGLNLMAHSLSSGSDIIYRKLYN 533
Query: 502 TIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKG---- 557
+IPG VEY K++++SK+Q+LFLVVYEFSG+TNEVVLY EN D Q +SKSSTVKG
Sbjct: 534 SIPGNVEYRAKYLIHSKKQRLFLVVYEFSGSTNEVVLYWENTDVQTGNSKSSTVKGISSR 593
Query: 558 RDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGP 617
RDAAFIG NE+QFAILD+D+TGLALY L G T QE D N+ V + NQ T+TNVGS++GP
Sbjct: 594 RDAAFIGSNENQFAILDEDRTGLALYTLPGGTSQEVKD-NDKVFEENQPTETNVGSIRGP 652
Query: 618 LQLMFESEVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSARA--GHYLQTKSEGKKS 675
MFE+EVDRIFSTP++STLMFA G+QIG+ KL++GYRLS GHY+ TKS+GKKS
Sbjct: 653 TPFMFETEVDRIFSTPLDSTLMFASHGNQIGLVKLIEGYRLSTSTANGHYISTKSDGKKS 712
Query: 676 IKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSSTKFDKGLPSFRSLLW 735
IKLK E++L+V WQET RG VAG+LTT RVLIVSA LD+LA +STK SLLW
Sbjct: 713 IKLKRNEIVLQVHWQETLRGNVAGILTTHRVLIVSAALDVLAGTSTK---------SLLW 763
Query: 736 VGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLANPTEINPRQKKGIE 795
VGPALLFST A+S+LGWDGKVR +LSISMP AVLVGALNDRLLLA+PTEINPRQKKG+E
Sbjct: 764 VGPALLFSTTAAVSILGWDGKVRPVLSISMPYAVLVGALNDRLLLASPTEINPRQKKGVE 823
Query: 796 IKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVC 855
IKSCLVGLLEP+LIGFATMQ FEQKLDLSEILYQITSRFDSLRITPRSLDILAKG PVC
Sbjct: 824 IKSCLVGLLEPILIGFATMQLSFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGSPVC 883
Query: 856 GDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFR 915
GDLAVSLSQ+GPQFTQV+RG+YA+KALRFSTALSVLKDEFLRSRDYP+CPPTS LFHRFR
Sbjct: 884 GDLAVSLSQSGPQFTQVMRGVYAVKALRFSTALSVLKDEFLRSRDYPRCPPTSHLFHRFR 943
Query: 916 QLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY 975
QL YACI++GQFDSAKETFE IADYE +LDLFICHLNPSAMRRLAQ+LE+EG + ELRRY
Sbjct: 944 QLAYACIRFGQFDSAKETFETIADYEGMLDLFICHLNPSAMRRLAQKLEDEGLDSELRRY 1003
Query: 976 CERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTNLKSIPQWELATEVVPY 1035
CERILR+RSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPT +K IPQWELA EV PY
Sbjct: 1004 CERILRIRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPTTVKDIPQWELAAEVTPY 1063
Query: 1036 MRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVHSSSVKS 1095
M+TDDG +PSII DH+G+YLGSIKGRG IVEV E SLVK F+PAG DNK NG+ SSVKS
Sbjct: 1064 MKTDDGTVPSIIVDHIGVYLGSIKGRGNIVEVREDSLVKAFMPAGNDNKVNGLELSSVKS 1123
Query: 1096 TYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDE 1155
N+ + K S MGLE+L Q +S+A DEQAKAEEEFKK+MYG AADGSSSDE
Sbjct: 1124 ISNQPNVVG--NPKGDSSMGLESLNKQLANSSA-DEQAKAEEEFKKSMYG-AADGSSSDE 1179
Query: 1156 EGTSKTKKLQIRIRDKPIASSAVDVNKIKEATKQFKLGEGLGPPMRTKSLIPGSQDLGQL 1215
EG SK K++ I+IRDKPI+SS VDVNKIKEATKQFKLGEGL PPMRT+S GSQDLGQ+
Sbjct: 1180 EGASKIKRIHIKIRDKPISSSTVDVNKIKEATKQFKLGEGLPPPMRTRS-NSGSQDLGQI 1238
Query: 1216 SSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQN 1275
S P G I S P DLFGT++ QP +S+P + G PIPEDFFQN
Sbjct: 1239 LSLPPVTTG---IPTATVSTPVDLFGTDASTQPEMISQPTTGAVGGGVAIGPIPEDFFQN 1295
Query: 1276 TIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQP 1335
TI S+ VAASLPP GT+LSK+ + G+ + PNQA+A A GL GGV Q QP
Sbjct: 1296 TISSVHVAASLPPAGTFLSKF---TPGIQTSNTTPNQASATEAGFGL-QGGVSNQAIQQP 1351
Query: 1336 AIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPA 1395
+P+ESIGLPDGGVPPQS Q Q Q+ PAQ S+QPLDLS LGVPNS DSGK P
Sbjct: 1352 VVPMESIGLPDGGVPPQSMPQAVVTPQPQLQPAQPQISSQPLDLSVLGVPNSADSGKLPQ 1411
Query: 1396 NPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADV 1455
+ S P SV PGQVPRGA ASVCFKTGLAHLE N L DALSCFDE+FLALAK+ SRG+D+
Sbjct: 1412 S-GSAPVSVHPGQVPRGAPASVCFKTGLAHLELNHLSDALSCFDESFLALAKEQSRGSDI 1470
Query: 1456 KAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCI 1515
KAQATICAQYKIAVTLL+EI RLQ+V GPS AISAKDEMARLSRHLGSLPL KHRINCI
Sbjct: 1471 KAQATICAQYKIAVTLLREIGRLQRVHGPS-AISAKDEMARLSRHLGSLPLLAKHRINCI 1529
Query: 1516 RTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQ 1575
RTAIKRNMEVQNYAY+KQMLELLLSKAP++KQ+E RSL+D+CVQRGL+NKSIDPLEDPSQ
Sbjct: 1530 RTAIKRNMEVQNYAYSKQMLELLLSKAPSNKQEEFRSLVDLCVQRGLTNKSIDPLEDPSQ 1589
Query: 1576 FCAATLSRLSTIGYDVCDLCGAKFSALSAPGCIICGMGSIKRSDALAGPVPTPFG 1630
FC+ATLSRLSTIGYDVCDLCGAKFSA++APGCI+CGMGSIKRSDA+A VP+PFG
Sbjct: 1590 FCSATLSRLSTIGYDVCDLCGAKFSAVTAPGCIVCGMGSIKRSDAIAASVPSPFG 1644
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816310|ref|XP_002876038.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321876|gb|EFH52297.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2404 bits (6230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1204/1652 (72%), Positives = 1357/1652 (82%), Gaps = 95/1652 (5%)
Query: 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
MEWATVQHLDLRHVGRG KPLQPH AAFHP+QA+IAVA+G++I+EFD LTG +IASIDI
Sbjct: 1 MEWATVQHLDLRHVGRGVSKPLQPHTAAFHPSQAVIAVAVGSHIMEFDALTGCKIASIDI 60
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120
SP VRM YSPTS +AVVAILEDCTIRSCDF+TEQ+ VLHSPEK+ E IS DTEVHLA+T
Sbjct: 61 GSPAVRMLYSPTSSNAVVAILEDCTIRSCDFETEQTCVLHSPEKRSEHISSDTEVHLAVT 120
Query: 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180
PLQPVVFFGF +RMSVTVVGTVEGGRAPTKIKTDLKKPIVN+ACHPRLPVLYVAYA+GLI
Sbjct: 121 PLQPVVFFGFPKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNIACHPRLPVLYVAYAEGLI 180
Query: 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240
RAYNIHTYAVHYTLQLDNTIKL+GA +FAFHPTLEW+FVGDRRGTLLAWDVS ERP+MIG
Sbjct: 181 RAYNIHTYAVHYTLQLDNTIKLIGASSFAFHPTLEWIFVGDRRGTLLAWDVSTERPNMIG 240
Query: 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESID 300
I QVGSQPITS++WL MLR+LVT+ +DGSLQVWKTRVIINPNRP Q NFFEPA++ESID
Sbjct: 241 ITQVGSQPITSISWLSMLRVLVTVSKDGSLQVWKTRVIINPNRPSTQTNFFEPAAMESID 300
Query: 301 IPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYT------REG 354
+PRILSQQGGEAVYPLPR++ LEVHP+LNLA L+FA +KN + + R
Sbjct: 301 VPRILSQQGGEAVYPLPRIKTLEVHPKLNLAALIFA-------VKNTSYWHSSLRTWRVM 353
Query: 355 RKQLFAVLQSARGSSASV--------LKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHL 406
R L+ + S+S+ L+EKLSSMGSSGILA+HQLQA LQEHH KG S L
Sbjct: 354 RTLKIEQLRLGKEGSSSLQFCKVLGDLQEKLSSMGSSGILAEHQLQALLQEHHHKGQSQL 413
Query: 407 TISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNREN 466
TISDIARKAFLYS GHAK+APISRLPLIT+ D+K QLKDIP PFHLELNFFN+ N
Sbjct: 414 TISDIARKAFLYS----GHAKTAPISRLPLITVVDAKDQLKDIP---PFHLELNFFNKPN 466
Query: 467 RVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVV 526
RVLHYPVRAFY++G+NL+A+NLCSG D+IY+KLY++IPG VEY+ KH+VYS+++ LFLVV
Sbjct: 467 RVLHYPVRAFYIEGLNLMAHNLCSGTDNIYKKLYTSIPGNVEYHSKHIVYSRKRHLFLVV 526
Query: 527 YEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILK 586
+EFSG TNEVVLY EN +QL +SK ST KG DAAFIGPN+DQFAILD+DKTGL++YIL
Sbjct: 527 FEFSGATNEVVLYWENTGSQLPNSKGSTAKGCDAAFIGPNDDQFAILDEDKTGLSMYILP 586
Query: 587 GVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQ 646
T E +E N + + NQ+ + + +QGP Q MFE+EVDR+FSTPIESTLMFAC+G Q
Sbjct: 587 KYTTMEE-NEKNLLSEENQNKEADASGIQGPQQFMFETEVDRVFSTPIESTLMFACNGTQ 645
Query: 647 IGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRV 706
IG+AKL QGYRLSA GHY+ T+ EG+KSIKLK E+ L+V WQET RGYVAG+LTTQRV
Sbjct: 646 IGLAKLFQGYRLSASDGHYISTQGEGRKSIKLKKHEIALQVQWQETPRGYVAGILTTQRV 705
Query: 707 LIVSADLDILASSSTKFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMP 766
L+VS LLWVGPALLFST TA+ +LGWDGKVR ILSIS P
Sbjct: 706 LMVS----------------------LLWVGPALLFSTTTAVCLLGWDGKVRTILSISTP 743
Query: 767 NAVLVGALNDRLLLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSE 826
A LVGALNDRLLLANPT+I+P+QKKGIEIKSCLVGLLEPLLIGF+TMQQ FEQK+DLSE
Sbjct: 744 YAALVGALNDRLLLANPTDISPKQKKGIEIKSCLVGLLEPLLIGFSTMQQTFEQKVDLSE 803
Query: 827 ILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFST 886
ILYQIT+RFDSLRITPRSLDILA+ PVCGDLAVSL+QAGPQF QVLR YAIKALRFST
Sbjct: 804 ILYQITTRFDSLRITPRSLDILARSAPVCGDLAVSLAQAGPQFNQVLRCAYAIKALRFST 863
Query: 887 ALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDL 946
ALSVLKDEFLRSRDYPKCPPTS LF RFRQLGYACIKYGQFDSAKETFEVI DYES+LDL
Sbjct: 864 ALSVLKDEFLRSRDYPKCPPTSLLFQRFRQLGYACIKYGQFDSAKETFEVIGDYESMLDL 923
Query: 947 FICHLNPSAMRRLAQRLEEEGANPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPE 1006
FICHLNPSAMRRLAQ+LEEE +PELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPE
Sbjct: 924 FICHLNPSAMRRLAQKLEEESGDPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPE 983
Query: 1007 WGGGNWEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVE 1066
WGGGNWEIKTPT++KSIP+WELA EV+PYM+ +DG IPSI++DH+G+YLG +KGR +VE
Sbjct: 984 WGGGNWEIKTPTDMKSIPKWELAGEVMPYMKNEDGTIPSIVADHIGVYLGCVKGRVNVVE 1043
Query: 1067 VTEKSLVKDFIPAGADNKPNGVHSSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSS 1126
+ E SLV +KP G+ S+ K + + SLMGLE+L QN +
Sbjct: 1044 IKEDSLV---------SKPGGL---SLLGKPVSDKPLALPAGESSSLMGLESLGKQNVA- 1090
Query: 1127 AADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIRDKPIASSAVDVNKIKEA 1186
DEQAKA EEFKKTMYGAA DGSSSDEEG +K KKLQIRIR+KP S+ VDVNK+KEA
Sbjct: 1091 ---DEQAKAAEEFKKTMYGAAGDGSSSDEEGVTKPKKLQIRIREKP-TSTTVDVNKLKEA 1146
Query: 1187 TKQFKLGEGLGPPM-RTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESW 1245
K FKLG+GLG M RTKS+ GSQDLGQ+ SQPS++ ++SAP D F SW
Sbjct: 1147 AKTFKLGDGLGLTMSRTKSINTGSQDLGQMLSQPSSSTAATTTAPGSASAPVDPFAMGSW 1206
Query: 1246 V-QPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQ---VSQ 1301
QP VS+PA G + PIPEDFFQNTIPS++VA +LPPPGTYLSK DQ +Q
Sbjct: 1207 TQQPQPVSQPAPPGVAA-----PIPEDFFQNTIPSVEVAKTLPPPGTYLSKMDQAAIAAQ 1261
Query: 1302 GVASGKVAPNQANAPA-ADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFP 1360
GV PNQAN D GLPDGG+P Q + QP P +++GLPDGGVP Q GQT
Sbjct: 1262 GV------PNQANNTTLPDIGLPDGGIPQQTSQQPGAPFQTVGLPDGGVPQQYPGQT--- 1312
Query: 1361 YQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFK 1420
+ P+QVP STQPLDLS LGVPN+GDSGK P P SPP SVRPGQVPRGAAA VCFK
Sbjct: 1313 ----LGPSQVPVSTQPLDLSVLGVPNTGDSGKPPGQPQSPPASVRPGQVPRGAAAPVCFK 1368
Query: 1421 TGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVTLLQEILRLQK 1480
TGLAHLEQNQLPDALSCFDEAFLALAKD SRGAD+KAQATICAQYKIAVTLL+EILRLQ+
Sbjct: 1369 TGLAHLEQNQLPDALSCFDEAFLALAKDQSRGADIKAQATICAQYKIAVTLLREILRLQR 1428
Query: 1481 VQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLS 1540
VQG S A+SAKDEMARLSRHL SLPL KHRINCIRTAIKRNMEVQNY Y+KQMLELLLS
Sbjct: 1429 VQGAS-ALSAKDEMARLSRHLASLPLLAKHRINCIRTAIKRNMEVQNYGYSKQMLELLLS 1487
Query: 1541 KAPASKQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCGAKFS 1600
KAPAS+Q+ELR L+D+CVQRG SNKSIDPLEDPSQ C+ATLSRLSTIGYDVCDLCGAKF+
Sbjct: 1488 KAPASRQEELRGLVDLCVQRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFA 1547
Query: 1601 ALSAPGCIICGMGSIKRSDALAGPVP--TPFG 1630
ALS+PGCIICGMGSIKRSDALAGP P TPFG
Sbjct: 1548 ALSSPGCIICGMGSIKRSDALAGPAPVSTPFG 1579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1630 | ||||||
| DICTYBASE|DDB_G0278661 | 1340 | DDB_G0278661 "WD40 repeat-cont | 0.306 | 0.372 | 0.226 | 7.8e-17 | |
| DICTYBASE|DDB_G0289571 | 943 | DDB_G0289571 [Dictyostelium di | 0.115 | 0.200 | 0.258 | 1.8e-06 | |
| FB|FBgn0038642 | 950 | Muc91C "Mucin 91C" [Drosophila | 0.129 | 0.222 | 0.285 | 0.00015 | |
| POMBASE|SPBPJ4664.04 | 1207 | SPBPJ4664.04 "coatomer alpha s | 0.111 | 0.149 | 0.251 | 0.00054 | |
| SGD|S000000064 | 426 | SWD1 "Subunit of the COMPASS ( | 0.058 | 0.225 | 0.323 | 0.00058 |
| DICTYBASE|DDB_G0278661 DDB_G0278661 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 7.8e-17, Sum P(3) = 7.8e-17
Identities = 130/574 (22%), Positives = 233/574 (40%)
Query: 444 HQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTI 503
H P+ L + FF +YP + DG + +Y +G I +KL T
Sbjct: 576 HLNHSFPLVSKLPLPMGFFFEPENTFNYPSEITFFDGTYVKSYLPLNG---ITKKLIDTP 632
Query: 504 ----------PGTVEYYPK--HMVYSKRQQLFLVVYEFSGTTNEVVLYRENV-DTQ-LAD 549
G E K +++ QLF ++Y+ + L + + D Q L +
Sbjct: 633 IMVNSASGMGSGGGEDISKGKKFLFNNEFQLFALIYDSFSVAAQAQLSKYLIMDLQGLVN 692
Query: 550 SKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDT 609
+ G D FIG N+ Q IL GL + K TL + GV S+
Sbjct: 693 QQGD---GSDCVFIGNNQ-QILIL-----GLDGKLAKVATLSK-----QGV-----SSFK 733
Query: 610 NVGSVQGPLQLMFESEVDRIFSTPI--ESTLMFACDGDQ-IGMAKLVQGYRLSARAGHYL 666
N V P + + STP+ +++ C + +K V S + + +
Sbjct: 734 NFTLV--P-------RITSVHSTPLGGNKVVLYFCQEKSCLVFSKNVNQSDPSCKDNYMV 784
Query: 667 QTKSEGKKSI-KLKVTEVMLKVAWQETQRG--YVAGVLTTQRVLIVSADLDILAS--SST 721
+G I +L+ E + ++ WQ + ++ +LT QR++I ++ L I+ S
Sbjct: 785 DI--DGDNGILQLQPNEKVFQIEWQSDPKSSQHICAILTNQRIIITNSRLRIINQIHSPP 842
Query: 722 KFDKGLPS-FRSLLWVGPALLFSTATAISVLGWDGKV--RNILSISMPNAVLVGALNDRL 778
+ S F+S+ W+ LL++T+T + + + I ++S+ +L L DR+
Sbjct: 843 NHHQSTSSYFQSIFWLEWTLLYTTSTHLMYMTLQNNQAPKPISTLSISPIILSTILPDRM 902
Query: 779 LLANPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFE-QKLDLSEILYQITSRFDS 837
+ P K ++ +G+LE L+IG ++ + + +K LS L I + D
Sbjct: 903 IFGYQGLQVPG-KNETTVRCQAIGILECLIIGLLSLPPFIQYEKKYLSSCLQNIVQKLDY 961
Query: 838 LRITPRSLDILAKGPPVCGDLAVSLS------QAGPQFTQVLRGIYAIKALRFSTALSVL 891
RI+ LD L + DLA SLS Q+ + R + K ++ A L
Sbjct: 962 TRISKHVLDKLRERSFT--DLAYSLSNDMKISQSKQSSLEKFRMAWISK--QYEAANRHL 1017
Query: 892 KDEFLRSRDYPKCPPT-----SQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDL 946
EF R T ++L R G C+ G + AK+ F+ ++++ +L +
Sbjct: 1018 SIEFNRISIIKNPNDTEKRQFNKLKENMRDFGRECMNAGHYLLAKDCFQKLSEHIYLLQI 1077
Query: 947 FICHLNPSAMRRLAQRLEEEGANPELRRYCERIL 980
I + ++ + + E G + L C++ L
Sbjct: 1078 SILLNDRDSVIAIKRDAELRGDDHVLLAACDKYL 1111
|
|
| DICTYBASE|DDB_G0289571 DDB_G0289571 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 53/205 (25%), Positives = 95/205 (46%)
Query: 1386 NSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLAL 1445
N D+ S +NP SP + + + K + +E +A+ D+ L
Sbjct: 685 NFTDTASSNSNPTSPISQ------KLNSESIEYMKKCINQMENGNFKEAILDLDQCIKIL 738
Query: 1446 AKDHSRGADV-KAQATICAQYKIAVTLLQEILRLQK-VQGPSAA--ISAKDE-MARLSRH 1500
+ HS + + + C YK+ + LL EI ++K ++ S +S+ E +A LS+
Sbjct: 739 LQVHSNNLSIIQNEINFCVGYKVTLNLLIEIKEIEKKIEQESNKDEVSSYYETIALLSKF 798
Query: 1501 LGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP--ASKQDELRSL-IDMC 1557
L +PLQT HR+ C + A+K N+ N+ A +++E++L K K+ E + + C
Sbjct: 799 LVDIPLQTNHRLVCAKMAVKYNLISNNFGIAGKLIEIILQKGINLGDKEKEQYEIQLQQC 858
Query: 1558 VQRGLSNKSIDPLEDPSQFCAATLS 1582
+N S+ PS C ++ S
Sbjct: 859 RDNQFNNSSLPMYICPS--CKSSTS 881
|
|
| FB|FBgn0038642 Muc91C "Mucin 91C" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 0.00015, P = 0.00015
Identities = 66/231 (28%), Positives = 88/231 (38%)
Query: 1198 PPMRTKSL-IPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSK--- 1253
PP ++ P S G S PS++ G AP+SS + S+ PA+ S
Sbjct: 255 PPSQSYGAPAPPSSKYGPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPAAPSSSYG 314
Query: 1254 -PASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTY-LSKYDQVSQGVASGKVAPN 1311
PA+ SS GA P + PS A PP +Y S G + +
Sbjct: 315 APAAPSSSYGAPAAP-SSSYGAPAPPSKSYGAPAPPSSSYGAPAAPSKSYGAPAPPSSSY 373
Query: 1312 QANAPAADS-GLPDXXXXXXXXXXXXXXXESIGLPDGGVPPQSS-GQTPFPYQSQVLPAQ 1369
A AP + S G P +S G P PP SS G P +S PA
Sbjct: 374 GAPAPPSSSYGAP--APPSPSYGAPAPPSKSYGAP---APPSSSYGAPAAPSKSYGAPA- 427
Query: 1370 VPPSTQ---PLD-LSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAAS 1416
PPS+ P S+ G P++ S P PA P S G P+ +S
Sbjct: 428 -PPSSSYGAPAPPSSSYGAPSAPSSSYGPPKPAPAPPSSSYGAPPQAPVSS 477
|
|
| POMBASE|SPBPJ4664.04 SPBPJ4664.04 "coatomer alpha subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 50/199 (25%), Positives = 85/199 (42%)
Query: 1426 LEQNQLPDALSCFDEA-FLAL---AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKV 1481
++ N++ +A CF +LAL A ++ A C +Y +A++ E RL +
Sbjct: 1007 VKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCELERRRLGE- 1065
Query: 1482 QGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSK 1541
+ A+ LS + S LQ H I +R AI + +++NY A + LL
Sbjct: 1066 EDTKRALE-------LSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118
Query: 1542 APASKQDELRSLIDMCVQRGLSNKSIDPLEDPS---QFCAATLSRL-STIGYDVCDLCGA 1597
A + E + R + + + DP + C TL+ + S +DVC +CGA
Sbjct: 1119 AESGPAAEAANRAITLGDRN-PHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCSVCGA 1177
Query: 1598 KF-SALSAPGCIICGMGSI 1615
+ C +C +G I
Sbjct: 1178 VYHKGYVNEVCTVCDVGGI 1196
|
|
| SGD|S000000064 SWD1 "Subunit of the COMPASS (Set1C) complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 0.00058, P = 0.00058
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 195 QLDNTIKL-LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS--QPITS 251
+L +TI+ L F P ++L +G G L+ +D+ RP + +G+ +PITS
Sbjct: 18 KLTHTIENPLRTECLQFSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITS 77
Query: 252 VAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEP 293
+AW P RLL+T RD S+++W + P++P + F P
Sbjct: 78 IAWSPDGRLLLTSSRDWSIKLWD---LSKPSKPLKEIRFDSP 116
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1630 1585 0.00081 125 3 11 22 0.41 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 631 (67 KB)
Total size of DFA: 604 KB (2269 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 145.81u 0.11s 145.92t Elapsed: 00:00:06
Total cpu time: 145.81u 0.11s 145.92t Elapsed: 00:00:06
Start: Sat May 11 02:29:27 2013 End: Sat May 11 02:29:33 2013
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1630 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-07 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 8e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-04 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 5e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| pfam04053 | 429 | pfam04053, Coatomer_WDAD, Coatomer WD associated r | 0.004 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (144), Expect = 6e-09
Identities = 58/281 (20%), Positives = 111/281 (39%), Gaps = 24/281 (8%)
Query: 5 TVQHLDLRHVGRGDHKPLQPHEA-----AFHPNQALIAVAIGT--YIIEFDTLTGSRIAS 57
TV+ DL G+ L+ H AF P+ L+A I +D TG +++
Sbjct: 135 TVKLWDLSTPGKLIRT-LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 58 IDI-NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVH 116
+ PV +A+SP G + + D TIR +D +L S V
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL--WDLSTGKLLRSTLSGHSDSVV----- 246
Query: 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176
+ +P ++ G + + + + + ++++A P +L +
Sbjct: 247 SSFSPDGSLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304
Query: 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIER 235
DG +R +++ T + +L L + + +F P L G GT+ WD+ +
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
Query: 236 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276
P G + SV++ P R++ + DG++++W
Sbjct: 363 PLKT---LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLS 400
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 7e-09
Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 63/250 (25%)
Query: 28 AFHPNQALIAVAI--GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCT 85
AF P+ +++ + T I +D TG + ++ GH
Sbjct: 100 AFSPDGRILSSSSRDKT-IKVWDVETGKCLTTL--------------RGH-------TDW 137
Query: 86 IRSCDFDTEQSFVLHSPEKKMESISVDTEVHL-ALTPLQPVVFFGFHRRMSVTVVGTVEG 144
+ S F + +FV S S D + L L + V H
Sbjct: 138 VNSVAFSPDGTFVASS--------SQDGTIKLWDLRTGKCVATLTGH------------- 176
Query: 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204
+ ++A P L + +DG I+ +++ T TL+ G
Sbjct: 177 -----------TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----G 221
Query: 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 264
+ AF P L G GT+ WD+ + + + +TS+AW P + L +
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASG 279
Query: 265 CRDGSLQVWK 274
DG++++W
Sbjct: 280 SADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 53/263 (20%), Positives = 89/263 (33%), Gaps = 69/263 (26%)
Query: 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ---SFVLHSPEKKMESISVDTEVHL 117
V +A+SP D TI+ D +T + + H+
Sbjct: 9 TGGVTCVAFSPDGKLLATG-SGDGTIKVWDLETGELLRTLKGHTG--------------- 52
Query: 118 ALTPLQPVVFFGFHRRM-SVTVVGTV-----EGGRAPTKIKTDLKKPIVNLACHPRLPVL 171
P++ V + S + T+ E G + + ++A P +L
Sbjct: 53 ---PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH-TSYVSSVAFSPDGRIL 108
Query: 172 YVAYADGLIRAYNIHTYAVHYTLQ----------------------LDNTIKL--LGAG- 206
+ D I+ +++ T TL+ D TIKL L G
Sbjct: 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168
Query: 207 -------------AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVA 253
+ AF P E L GT+ WD+S + +G ++ + SVA
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVA 226
Query: 254 WLPMLRLLVTLCRDGSLQVWKTR 276
+ P LL + DG+++VW R
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLR 249
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (131), Expect = 2e-07
Identities = 50/259 (19%), Positives = 98/259 (37%), Gaps = 20/259 (7%)
Query: 25 HEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI----NSPVVRMAYSPTSGHAVVAI 80
AF P+ L+ I+ L + +S V ++A S G++++
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 81 LE--DCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTV 138
D T++ D T + S+ A +P ++ G ++ +
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL------AFSPDGKLLASGSSLDGTIKL 182
Query: 139 VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYAVHYTLQLD 197
G P P+ +LA P +L +DG IR +++ T + +
Sbjct: 183 WDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 198 NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257
++ ++ + F P L G GT+ WD+ S++ + S + SVA+ P
Sbjct: 241 HSDSVVSS----FSPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPD 295
Query: 258 LRLLVTLCRDGSLQVWKTR 276
+LL + DG++++W
Sbjct: 296 GKLLASGSSDGTVRLWDLE 314
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.6 bits (127), Expect = 7e-07
Identities = 45/254 (17%), Positives = 98/254 (38%), Gaps = 18/254 (7%)
Query: 29 FHPNQALIAVAIGTY---IIEFD-TLTGSRIASIDINSPVVR-MAYSPTSGHAVVAILED 83
P+ I +A + + +D + G I +++ +S V +A+SP D
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 84 CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143
TI+ D T + + +S LA +P ++ ++ +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTD--PVSS-----LAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLL 203
G + + + + P +L +DG IR +++ + + ++ +L
Sbjct: 231 GKLLRSTLSGHSDSVV--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288
Query: 204 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLV 262
+ AF P + L G GT+ WD+ + ++ P++S+++ P L+
Sbjct: 289 ---SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 263 TLCRDGSLQVWKTR 276
DG++++W R
Sbjct: 346 GGSDDGTIRLWDLR 359
|
Length = 466 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-06
Identities = 42/195 (21%), Positives = 54/195 (27%), Gaps = 8/195 (4%)
Query: 1219 PSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIP 1278
A G APASS P E +PA+ + PA+ + A P + P
Sbjct: 591 APGAAGGEGPPAPASSGPP-----EEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
Query: 1279 SLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPD---GGVPPQIAPQP 1335
+ P D A A A PA P G P Q AP P
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705
Query: 1336 AIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPA 1395
A + D P + Q P G P +PA
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765
Query: 1396 NPASPPTSVRPGQVP 1410
A+P + P
Sbjct: 766 PAAAPAAAPPPSPPS 780
|
Length = 824 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-05
Identities = 48/250 (19%), Positives = 70/250 (28%), Gaps = 33/250 (13%)
Query: 1198 PPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPASA 1257
P + PG ++P G PA+ A G P +++PA A
Sbjct: 2742 PAVPAGPATPGGP---ARPARPPTTAGPPAPAPPAAPAAG---------PPRRLTRPAVA 2789
Query: 1258 GSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPA 1317
S + P P D L AA+LPP + + ++ AP P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP---LPPPTSAQPTAPPPPPGPP 2846
Query: 1318 ADSGLPDGGVPP-----------QIAPQPA----IPVESIGLPDGGVPPQSSGQTPFPYQ 1362
S G V P A +PA PV + P +S+ P
Sbjct: 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP---AVSRSTESFALPPD 2903
Query: 1363 SQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTG 1422
P Q P P P PP + G + +
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963
Query: 1423 LAHLEQNQLP 1432
L L ++
Sbjct: 2964 LGALVPGRVA 2973
|
Length = 3151 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 72/306 (23%), Positives = 100/306 (32%), Gaps = 46/306 (15%)
Query: 1145 GAAADGSSSDEEGTSKTKKL-QIRIRDKPIASSAVDVNKIKEATKQFKL----------- 1192
G ++D S +EEG+S K + Q P S D +++ Q +L
Sbjct: 124 GESSDSRSVNEEGSSDPKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQV 183
Query: 1193 ------GEGLGPPMRTKSLIP--GSQDLGQLSSQPSAAGGDGNITAPA-------SSAPG 1237
PP + +P GS Q + QP I+AP+ S P
Sbjct: 184 PPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPP 243
Query: 1238 DLFGTESWVQPASVSKPASA-GSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSK- 1295
T S P + + SS G P+P Q LQ +S PP L++
Sbjct: 244 LQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHAL-QQGPVFLQHPSSNPPQPFGLAQS 302
Query: 1296 -----------YDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGL 1344
+ + P Q P + LP P I P P P+ +
Sbjct: 303 QVPPLPLPSQAQPHSHTPPSQSALQPQQ---PPREQPLPPAPSMPHIKPPPTTPIPQLPN 359
Query: 1345 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1404
PP G +PFP LP PP+ +PL P S P S P
Sbjct: 360 QSHKHPPHLQGPSPFPQMPSNLPP--PPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQS 417
Query: 1405 RPGQVP 1410
P Q P
Sbjct: 418 VPAQPP 423
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 5e-05
Identities = 56/226 (24%), Positives = 79/226 (34%), Gaps = 29/226 (12%)
Query: 1197 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1256
GPP P + +L+ A+ + + P+ P D PA+V PA+
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD--------PPAAVLAPAA 2816
Query: 1257 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPG---TYLSKYDQVSQGVASGKVAPNQA 1313
A + P+P S Q A PPPG L V+ G + P+++
Sbjct: 2817 ALPPAASPAGPLP------PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870
Query: 1314 NA--PAADSGLPDGGVP-------PQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ 1364
A PAA + P + + P E P PPQ Q P P Q Q
Sbjct: 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
Query: 1365 VLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVP 1410
P P PL A +G S A P ++ PG+V
Sbjct: 2931 PPPPPPPRPQPPL---APTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
|
Length = 3151 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 32/192 (16%), Positives = 47/192 (24%), Gaps = 8/192 (4%)
Query: 1229 TAPASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPP 1288
AP ++ S P ++PA+ + P+ AA P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAG---AAAAPAEASAAPAPG 646
Query: 1289 PGTYLSKYDQVSQGVASGKVAPNQAN----APAADSGLPDGGVPPQIAPQPAIPVESIGL 1344
V+ AS A APAA P P A +
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP-AQPAPAP 705
Query: 1345 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1404
Q+ P Q+ + P+ + D +PA P PP
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765
Query: 1405 RPGQVPRGAAAS 1416
S
Sbjct: 766 PAAAPAAAPPPS 777
|
Length = 824 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-04
Identities = 53/243 (21%), Positives = 73/243 (30%), Gaps = 37/243 (15%)
Query: 1230 APASSAPGDLFGTESWVQPASVSKP-ASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPP 1288
PA + G G +V P A A ++VGA P T + A+L P
Sbjct: 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVP------AVTAVTGAAGAALAP 412
Query: 1289 PGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPV----ESIGL 1344
+ A+ AP A AP A + D +S
Sbjct: 413 KA--------AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464
Query: 1345 PDGGVPPQSSGQTPFPYQSQVLPAQ---VPPSTQPLDLSALGV-----PNSGDSGKSPAN 1396
PP SG P A P + P + V P + +PA
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524
Query: 1397 PASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVK 1456
A P RP P AAA+ + G A AL A + ++ D A
Sbjct: 525 AAPPAPEARP---PTPAAAAPAARAGGA-------AAALDVLRNAGMRVSSDRGARAAAA 574
Query: 1457 AQA 1459
A+
Sbjct: 575 AKP 577
|
Length = 830 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 45/229 (19%), Positives = 68/229 (29%), Gaps = 26/229 (11%)
Query: 1197 GPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKPAS 1256
P + +++ P + P GD AP S P D + P
Sbjct: 2579 EPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD---------THAPDPPPP 2629
Query: 1257 AGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQ---- 1312
+ S + P+ T+P + P PG G A+ +P Q
Sbjct: 2630 SPSPAANE----PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685
Query: 1313 -----ANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLP 1367
P PP P+PA P P + +P + P
Sbjct: 2686 RAARPTVGSLTSLADPP---PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
Query: 1368 AQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAAS 1416
A P + P + +PA PA+P P ++ R A AS
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP-PRRLTRPAVAS 2790
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 51/226 (22%), Positives = 76/226 (33%), Gaps = 33/226 (14%)
Query: 1198 PPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVSKP-AS 1256
P + + S S + P AA P +++P + QP + P
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 1257 AGSSVGAQGQPIPEDFFQNTIPSLQ----VAASLPPPGTYLSKYDQVSQGVASGKVAPNQ 1312
S+ G P + PS AA PP L++ VS+ S + P+Q
Sbjct: 2846 PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR-PAVSRSTESFALPPDQ 2904
Query: 1313 ANAPAADSGLPDGGVPPQIAPQ------PAIPVESIGLPDGGVPPQS--------SGQTP 1358
P P PPQ PQ P P P + P + SG P
Sbjct: 2905 PERPPQ----PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960
Query: 1359 FPYQSQVLPAQVP-PSTQPLDLSALGVPNSGDSGKSPANPASPPTS 1403
P+ ++P +V P + VP S ++PA+ P T
Sbjct: 2961 QPWLGALVPGRVAVPRFR--------VPQPAPSREAPASSTPPLTG 2998
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 31/190 (16%)
Query: 1230 APASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPP 1289
A +S+P + + A+ + GS + + P P P V+A+ PP
Sbjct: 2673 AAQASSP-----PQRPRRRAA---RPTVGS-LTSLADPPPPPPTPEPAPHALVSATPLPP 2723
Query: 1290 GTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIA--PQPAIPVESIGLPDG 1347
G ++ Q S + + P PA G PP A P PA P P
Sbjct: 2724 GPAAAR--QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
Query: 1348 GVPP-------QSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASP 1400
+ +S P P+ PA V L +A SPA P P
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA-----------SPAGPLPP 2830
Query: 1401 PTSVRPGQVP 1410
PTS +P P
Sbjct: 2831 PTSAQPTAPP 2840
|
Length = 3151 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 49/251 (19%), Positives = 75/251 (29%), Gaps = 28/251 (11%)
Query: 1193 GEGLGPPMRTKSLIPGSQDLGQLSSQPSAAGGDGNITAPASSAPGDLFGTESWVQPASVS 1252
G G GP T + P +Q ++ +AA A ++AP + +
Sbjct: 369 GGGAGPA--TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR 426
Query: 1253 KPASAGSSVGAQ---GQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVA 1309
PA + Q P + AA+ P + VA+ A
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA--------AGPRPVAAAAAA 478
Query: 1310 PNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQ----- 1364
APAA D PP P + PD + P P +
Sbjct: 479 APARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAF 538
Query: 1365 ----VLPAQVP---PSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVP-RGAAAS 1416
PA P + + A P + SG P ++P RG A
Sbjct: 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAA--RLPVRGLAQQ 596
Query: 1417 VCFKTGLAHLE 1427
+ ++ LA +E
Sbjct: 597 LARQSELAGVE 607
|
Length = 700 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274
+ ++ + P+TSVA+ P + L + DG++++W
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 97/488 (19%), Positives = 171/488 (35%), Gaps = 146/488 (29%)
Query: 505 GTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIG 564
G+ E YP+ + ++ + LV + E ++Y T LA + G D ++
Sbjct: 27 GSTEVYPQSLSHNPNGRFVLVCGD-----GEYIIY-----TALAWRNKAFGSGLDFVWVS 76
Query: 565 PNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFES 624
N +A+L+ ++ V ++ S++ P
Sbjct: 77 RNR--YAVLE---------------------KSGTVKIFKNFKESVTKSIKLPYS----- 108
Query: 625 EVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSI-----KLK 679
VD+IF G L KSE S
Sbjct: 109 -VDKIF-------------------------------GGALLGVKSESFVSFYDWEQGKL 136
Query: 680 VTEVMLK---VAWQETQRGYVAGVLTTQRVLIVSADLDILASS-STKFDK---GLPSFRS 732
+ + + V W + VA +LT V I++ +L+ +A F+ +S
Sbjct: 137 IRRIDVSPKYVIWSDD-GELVA-LLTKDTVYILNYNLEAVAEGVEDAFEVLHEVTERVKS 194
Query: 733 LLWVGPALLFSTATAISVL-GWDGKVRNILSISMPNAVLVGALN--DRLLLANPTEINPR 789
W G +++T + L G+ I + P L+G L +R+ L + + N
Sbjct: 195 GAWDGDVFIYTTLNHLKYLVN--GETGIIKHLDKPM-YLLGYLPKDNRVYLLDR-DGNVV 250
Query: 790 QKKGIEIKSCLVGLLEPLLIGF--ATMQQYFEQKLDL---SEILYQITSRFDSLRITPRS 844
EI LE F A +++ +E+ L + S +L Q RF L
Sbjct: 251 ---SYEI---DPTELE-----FKTALLRKDYEEVLRIIANSNLLGQKIIRF--LE----- 292
Query: 845 LDILAKGPPVCGDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLK---DEFLRSRDY 901
KG P +LA+ P L A++ AL + K DE
Sbjct: 293 ----KKGYP---ELALQFVT-DPDTRFDL----ALELGNLDVALEIAKELDDE------- 333
Query: 902 PKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQ 961
H++++LG A + G A+E ++ D++ +L L++ N +++LA+
Sbjct: 334 ----------HKWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNKEKLKKLAK 383
Query: 962 RLEEEGAN 969
EE G
Sbjct: 384 IAEERGDY 391
|
This region is composed of WD40 repeats. Length = 429 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1630 | |||
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| PF06957 | 422 | COPI_C: Coatomer (COPI) alpha subunit C-terminus; | 100.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.92 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.92 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.91 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.91 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.88 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.87 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.86 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.85 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.84 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.84 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.84 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.83 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.83 | |
| PTZ00421 | 493 | coronin; Provisional | 99.83 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.82 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.82 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.82 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.81 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.81 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.8 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.8 | |
| PTZ00420 | 568 | coronin; Provisional | 99.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.79 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.79 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.79 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.79 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.78 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.77 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.77 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.77 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.77 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.77 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.76 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.76 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.76 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.76 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.75 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.74 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.73 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.72 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.72 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.72 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.71 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.71 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.7 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.7 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.7 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.7 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.69 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.69 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.69 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.68 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.68 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.68 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.67 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.66 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.66 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.66 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.66 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.65 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.61 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.6 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.6 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.59 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.59 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.58 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.58 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.58 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.57 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.57 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.56 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.55 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.53 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.52 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.5 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.5 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.5 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.5 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.5 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.5 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.5 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.49 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.46 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.46 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.46 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.44 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.44 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.43 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.43 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.38 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.37 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.36 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.35 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.34 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.34 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.31 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.31 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.29 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.27 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.26 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.25 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.23 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.21 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.19 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.19 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.14 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.14 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.13 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.11 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.11 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.1 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.09 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.09 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.06 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.06 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.06 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.04 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.03 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.02 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.02 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.02 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.97 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.96 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.92 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.89 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.89 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.87 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.86 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.85 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.85 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.84 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.8 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.79 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.79 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.76 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.75 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.74 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.74 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.72 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.71 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.67 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.67 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.67 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.67 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.64 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.62 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.55 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.53 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.53 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.51 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.47 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.45 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.32 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.31 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.3 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.27 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.25 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.22 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.18 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.11 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.09 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.04 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.03 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.01 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.98 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.97 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.96 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.9 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.89 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.89 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.76 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.75 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.74 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.74 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.73 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.69 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.67 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.63 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.58 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.55 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.54 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.54 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.53 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.52 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.5 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.44 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.33 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.31 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.26 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.26 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.03 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.02 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.0 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.95 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.95 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.95 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.94 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.61 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.53 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.42 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.29 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.27 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.16 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.02 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.94 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.89 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.83 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.76 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.75 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.65 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.58 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.4 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.38 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.03 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.01 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.91 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.87 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 94.82 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 94.8 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.78 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.74 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.73 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.71 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.67 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.57 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.17 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.14 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.09 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.96 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.23 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.88 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.79 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.76 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.75 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.65 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.47 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 92.45 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 92.44 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.26 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.22 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.19 | |
| PRK10115 | 686 | protease 2; Provisional | 92.14 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 92.09 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.05 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.78 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.6 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 91.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.32 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.74 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 90.6 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 89.97 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.71 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 89.27 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 88.9 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 88.81 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 88.76 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.71 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 87.49 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 86.49 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 85.48 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 85.09 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 84.91 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 84.82 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 84.46 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 83.66 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 83.34 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 82.53 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 81.67 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 80.81 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 80.75 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 80.71 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 80.66 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 80.19 |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-157 Score=1404.29 Aligned_cols=1118 Identities=19% Similarity=0.265 Sum_probs=871.4
Q ss_pred CCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 20 KPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
+..||++++|||..+|++++.. |.|++||++.+.++..|. |+++|+.++|||+ +.+++||++|..|+||++.+.+|.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecccceeh
Confidence 4569999999999999999999 889999999999999999 5599999999999 999999999999999999988875
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
.+.. |+.|..+.+.||+..+||+++|+|. +|++|+|.++ .|+.+++||.++|+|..|||...+++|+|.|
T Consensus 87 ftL~-------GHlDYVRt~~FHheyPWIlSASDDQ-TIrIWNwqsr--~~iavltGHnHYVMcAqFhptEDlIVSaSLD 156 (1202)
T KOG0292|consen 87 FTLL-------GHLDYVRTVFFHHEYPWILSASDDQ-TIRIWNWQSR--KCIAVLTGHNHYVMCAQFHPTEDLIVSASLD 156 (1202)
T ss_pred hhhc-------cccceeEEeeccCCCceEEEccCCC-eEEEEeccCC--ceEEEEecCceEEEeeccCCccceEEEeccc
Confidence 5444 7889999999999999999999999 9999999999 9999999999999999999999999999999
Q ss_pred CeEEEEEcCCC-----------------------------cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEE
Q 000346 178 GLIRAYNIHTY-----------------------------AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1630)
Q Consensus 178 GtIrIWDl~t~-----------------------------~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVr 227 (1630)
.+|||||+... -..+.+++ +..|+ .++|||.-+.|++|++|+.|+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN-----waAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN-----WAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc-----eEEecCCcceEEecCCcceee
Confidence 99999998721 12234444 66777 999999999999999999999
Q ss_pred EEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccc
Q 000346 228 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQ 307 (1630)
Q Consensus 228 VWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~ 307 (1630)
+|.+...+.+.+.+.++|.++|+++.|||...+|+|.|+|++|||||+..... ...|..
T Consensus 232 lWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~-------v~tfrr-------------- 290 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS-------VQTFRR-------------- 290 (1202)
T ss_pred EEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc-------eeeeec--------------
Confidence 99999888888999999999999999999999999999999999999974332 112221
Q ss_pred cCCcccccCCCeEEEEeCCCCCceeEeeccccCCCcccchhhhhhhccccceehhhcccCCchhhhHhhhhccCCcchhh
Q 000346 308 QGGEAVYPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILA 387 (1630)
Q Consensus 308 ~gge~vy~l~ri~~v~~HPk~Nl~Alvfa~~~~~D~~kN~~~~~~egr~ql~~vlq~~r~~~~~~~~e~l~~lgss~~~a 387 (1630)
...|+|.++.||++|++| .+||.+ +.|+++.|+.++
T Consensus 291 -------endRFW~laahP~lNLfA------AgHDsG--------------m~VFkleRErpa----------------- 326 (1202)
T KOG0292|consen 291 -------ENDRFWILAAHPELNLFA------AGHDSG--------------MIVFKLERERPA----------------- 326 (1202)
T ss_pred -------cCCeEEEEEecCCcceee------eecCCc--------------eEEEEEcccCce-----------------
Confidence 268999999999999988 367775 778999888652
Q ss_pred hHHHHHHHHHhhccCCccchhhHHHHhhhhcccccccccccCCccCCceeeeeccccccccCCccccccccccccccccc
Q 000346 388 DHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENR 467 (1630)
Q Consensus 388 ~~~~~~q~~~~~~~~~~~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 467 (1630)
| .+|...
T Consensus 327 ------------------------------~-----------------------------------~v~~n~-------- 333 (1202)
T KOG0292|consen 327 ------------------------------Y-----------------------------------AVNGNG-------- 333 (1202)
T ss_pred ------------------------------E-----------------------------------EEcCCE--------
Confidence 1 112222
Q ss_pred cccccceeeeecccceeeccccCCCccchhcccccCCCcceecccccccCCCCcEEEEEeecCCCceeEEEeecccccc-
Q 000346 468 VLHYPVRAFYVDGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQ- 546 (1630)
Q Consensus 468 ~~~~~~~~~~~dg~~~~~~~l~~~~~~~~~~l~~~~~g~~e~~p~~l~~sp~~~~~~v~~~~~~~~~e~~iy~~~~~~~- 546 (1630)
.||+++..|..|++.+..+..+.+| +-+|+.+..|.+|+|||..+.|++|.+.+++++|+++|...++-.
T Consensus 334 -------LfYvkd~~i~~~d~~t~~d~~v~~l--r~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~ 404 (1202)
T KOG0292|consen 334 -------LFYVKDRFIRSYDLRTQKDTAVASL--RRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS 404 (1202)
T ss_pred -------EEEEccceEEeeeccccccceeEec--cCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC
Confidence 3466778888899988766655443 567889999999999999999999999999999999885543332
Q ss_pred --cccCCCCCcccccEEEeCCCCCeEEEEeCCCceEEEEEccCcccccccccCCcccccCCCCCcCcccccCCccccccc
Q 000346 547 --LADSKSSTVKGRDAAFIGPNEDQFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFES 624 (1630)
Q Consensus 547 --~~~~~g~~~~~~~~~f~g~~~~~~ail~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1630)
...++| .|.+++|+++| +||+++.+.+++.|+++.++.. ++++ .+.
T Consensus 405 ~~~~~~k~---tG~~a~fvarN--rfavl~k~~~~v~ik~l~N~vt---------------------kkl~------~~~ 452 (1202)
T KOG0292|consen 405 DGKDVKKG---TGEGALFVARN--RFAVLDKSNEQVVIKNLKNKVT---------------------KKLL------LPE 452 (1202)
T ss_pred CchhhhcC---CCCceEEEEec--ceEEEEecCcceEEecccchhh---------------------hccc------Ccc
Confidence 233347 78999999985 8999999889999999987665 3344 334
Q ss_pred ccceecccCCCceeEEeecCCeEEEeecccccccccccccccccccccceeeEecccceEEEEEeccCCCceEEEEEeee
Q 000346 625 EVDRIFSTPIESTLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQ 704 (1630)
Q Consensus 625 ~~~~if~~p~~~~l~~~~~~~~i~~~~~~~~yd~~~~~~~~i~~~~~~~~~~~~~~~e~V~~v~W~~~~~g~~~ai~t~~ 704 (1630)
.++.||.+..+.+|+ .++..+.+ ||.. ++ +..-.++.. .|++|+|+.+ +..||+++||
T Consensus 453 ~~~~IF~ag~g~lll--~~~~~v~l------fdvQ--------q~---~~~~si~~s-~vkyvvws~d--m~~vAll~Kh 510 (1202)
T KOG0292|consen 453 STDDIFYAGTGNLLL--RSPDSVTL------FDVQ--------QK---KKVGSIKVS-KVKYVVWSND--MSRVALLSKH 510 (1202)
T ss_pred cccceeeccCccEEE--EcCCeEEE------EEee--------cc---eEEEEEecC-ceeEEEEcCc--cchhhhcccc
Confidence 589999876666544 34455666 7733 32 222223323 5899999999 6789999999
Q ss_pred eEEEEccchhhhhhccccCCCCCCceeeEeEecC-eEEEEcccceEEEEeCCceeEEEEecCCceEEEEEecCcEEEecC
Q 000346 705 RVLIVSADLDILASSSTKFDKGLPSFRSLLWVGP-ALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALNDRLLLANP 783 (1630)
Q Consensus 705 ~i~i~~~~l~~~~~~~~~~~~~~~~i~S~~W~g~-~~iytT~t~i~y~~~~G~~~~i~~~~~~~~~L~g~l~~r~~~~~~ 783 (1630)
.|+|++++|+.+|++||++ |||||.|+.+ +|||||.+||+|.+.||++|+|+++|.| +|++..-.|.+|+. .
T Consensus 511 ~i~i~~kkL~l~~sihEti-----riksgawde~gVfiYtT~nHikYal~~GD~GIikTLd~~-iyitkv~gn~V~cl-~ 583 (1202)
T KOG0292|consen 511 TITIADKKLELLCSIHETI-----RIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTLDKP-IYITKVKGNKVFCL-N 583 (1202)
T ss_pred eEEEEecchhheecchhee-----EeeeceeccCceEEEEehhhhhhhhccCCcceEEecccc-eEEEEeeCCEEEEE-e
Confidence 9999999999999999999 9999999976 9999999999999999999999999999 89995555555555 5
Q ss_pred CCCCcCCCCceEEeeeecchhhhHHHhhhhhHHHHHHhhcHHHHHHHHhhccccCCCChhHHHHHHcCCCCcccchhhcc
Q 000346 784 TEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAKGPPVCGDLAVSLS 863 (1630)
Q Consensus 784 ~~~~~~~~~~~~i~s~ll~llE~ll~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lAl~l~ 863 (1630)
|+..|+ +--+.-+|| .|+++.+.+.|++ +|. +++ ++..+++++|.||+|+| |+|+||+.+
T Consensus 584 rd~~~~--------~~~IDptEy-~FKlALi~k~yde------Vl~-lI~--ns~LvGqaiIaYLqKkg--ypeiAL~FV 643 (1202)
T KOG0292|consen 584 RDGEIE--------CLTIDPTEY-RFKLALLNKKYDE------VLH-LIK--NSNLVGQAIIAYLQKKG--YPEIALHFV 643 (1202)
T ss_pred cCCCeE--------EEeechHHH-HHHHHHHhhhhHH------HHH-HHH--hcCcccHHHHHHHHhcC--Ccceeeeee
Confidence 555443 223566995 7778887776766 555 333 56789999999999999 999999888
Q ss_pred ccCCccccchhhhHHHhcCCHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhhHH
Q 000346 864 QAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESI 943 (1630)
Q Consensus 864 ~~~~~~~~~~rf~lA~~~g~l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~lg~~al~~g~~~~a~~~~~~~~d~~~L 943 (1630)
.| .++||+||+++||||+|++.||+.+ ....|+.||.+||++||+++||.|||+.++|++|
T Consensus 644 kD-----~~tRF~LaLe~gnle~ale~akkld--------------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekL 704 (1202)
T KOG0292|consen 644 KD-----ERTRFELALECGNLEVALEAAKKLD--------------DKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKL 704 (1202)
T ss_pred cC-----cchheeeehhcCCHHHHHHHHHhcC--------------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhhe
Confidence 87 4669999999999999999999975 2446777999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCChhHHHH--------HHHHHhhhccCcccccccchhccccCCCCCcCC--CCC--
Q 000346 944 LDLFICHLNPSAMRRLAQRLEEEGANPELRRY--------CERILRVRSTGWTQGIFANFAAESMVPKGPEWG--GGN-- 1011 (1630)
Q Consensus 944 l~Ly~~~g~~~~l~~l~~~~~~~~~~~~~~~~--------~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~g~-- 1011 (1630)
+|||++|||.|||+||+++||. ++|....++ .||+..++..| +.|++|.+| +|.
T Consensus 705 sfLYliTgn~eKL~Km~~iae~-r~D~~~~~qnalYl~dv~ervkIl~n~g-------------~~~laylta~~~G~~~ 770 (1202)
T KOG0292|consen 705 SFLYLITGNLEKLSKMMKIAEI-RNDATGQFQNALYLGDVKERVKILENGG-------------QLPLAYLTAAAHGLED 770 (1202)
T ss_pred eEEEEEeCCHHHHHHHHHHHHh-hhhhHHHHHHHHHhccHHHHHHHHHhcC-------------cccHHHHHHhhcCcHH
Confidence 9999999999999999999997 778888877 89999999989 999999999 772
Q ss_pred --ceeecCCCCCCcccccccccccccccCCCCCCCceeccccceecccccccceEEEEechhhhccccccCCCCCCCCCC
Q 000346 1012 --WEIKTPTNLKSIPQWELATEVVPYMRTDDGPIPSIISDHVGIYLGSIKGRGTIVEVTEKSLVKDFIPAGADNKPNGVH 1089 (1630)
Q Consensus 1012 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ylg~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1089 (1630)
.++.+..+. |-+-.+|++|.......|.| .-+|++||-......++|+++...-...+.+..+.+-
T Consensus 771 ~ae~l~ee~~~----~~~~lP~~~~~a~ll~pP~p-------~~~l~nwPLl~~s~~~fe~~~~~~~~~~av~~~~e~~- 838 (1202)
T KOG0292|consen 771 QAEKLGEELEK----QVPSLPEVDPNASLLQPPVP-------IMPLENWPLLSVSKGTFEGALLSRSSSLAVDRDDEGD- 838 (1202)
T ss_pred HHHHHHHhhcc----ccCCCCCCCCcccccCCCCc-------cccccCCchhhhhhhhhhHhhhhhcccCccccccccc-
Confidence 223322221 22334455555555555554 3466689988777788898887554322222111110
Q ss_pred CCCcccccccCCCCCCCCcccccccccchhhhccCCCcchHHHHHHHHHHHhhhccccCCCCCCcccccccccccccccc
Q 000346 1090 SSSVKSTYNKSKGASDVDSKVGSLMGLETLTIQNTSSAADDEQAKAEEEFKKTMYGAAADGSSSDEEGTSKTKKLQIRIR 1169 (1630)
Q Consensus 1090 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 1169 (1630)
+ ....|+. .-+.| | ++. -.+++..+.+|+...+| ++++.
T Consensus 839 -------~-g~e~~~~-----e~~l~----------------------e--d~~--~~~d~~g~~~~dE~~gW--dv~d~ 877 (1202)
T KOG0292|consen 839 -------W-GEEGWDV-----ELMLG----------------------E--DGI--LFNDGAGEVGEDEGGGW--DVGDL 877 (1202)
T ss_pred -------c-cccchhh-----hhccc----------------------c--ccc--cccccccccCcccccCc--Ccccc
Confidence 0 0001100 00000 0 000 01111111111112233 22221
Q ss_pred ccc---ccccccchhhHHHHhhhcccCCCCCCC--c-cccc-C-----CCCCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 000346 1170 DKP---IASSAVDVNKIKEATKQFKLGEGLGPP--M-RTKS-L-----IPGSQDLGQLSSQPSAAGGDGNITAPASSAPG 1237 (1630)
Q Consensus 1170 ~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 (1630)
+-+ ..+..+|.+.+. .+.-++. . .++| + ++|+|+.+
T Consensus 878 ~l~pe~~~~~~~~~~~~~--------~p~~~~~~~~W~~nS~L~adhvaAGsf~tA------------------------ 925 (1202)
T KOG0292|consen 878 DLPPEEDTPKGADDGEFV--------VPAQGMSVSIWSNNSPLAADHVAAGSFETA------------------------ 925 (1202)
T ss_pred cCCcccccccccccccee--------cCCCCCcchhccccCcchhhhhhcCchHHH------------------------
Confidence 211 111122221111 1110111 1 1222 2 56677755
Q ss_pred CcccccccccCCccCCCCCCCCccCccCCCCCccccccccccccccccCCCCccccccccccccccccCCcCCCCCCCCC
Q 000346 1238 DLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPA 1317 (1630)
Q Consensus 1238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1317 (1630)
|+.|..| +|+ .+|.|++-.|+..|. .
T Consensus 926 ----~~lL~dq------------vgv-------------------v~f~p~Kt~fl~iy~------------~------- 951 (1202)
T KOG0292|consen 926 ----MRLLHDQ------------VGV-------------------VNFGPLKTHFLKIYA------------G------- 951 (1202)
T ss_pred ----HHHHHhh------------hcc-------------------eecccHHhhhhhhcc------------c-------
Confidence 7777777 555 788999999999987 2
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC
Q 000346 1318 ADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANP 1397 (1630)
Q Consensus 1318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~p~~~ 1397 (1630)
++.+||.- |+- | ++.-|+..+. +++.
T Consensus 952 sR~~l~~~--~~~--------------~--------------------------~~~~~~R~~s----e~~~-------- 977 (1202)
T KOG0292|consen 952 SRTYLRAT--PCL--------------P--------------------------VSLYPVRNWS----ETSS-------- 977 (1202)
T ss_pred cceeccCC--CCc--------------c--------------------------cccccccccc----cchh--------
Confidence 44444411 000 0 0122322222 1111
Q ss_pred CCCCCCCCCCCCCCchhh-HHHHHHHHHHHhcCChHHHHHHHHHHHH----HHhccccchHHHHHHHHHHHHHHHHHhhH
Q 000346 1398 ASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL----ALAKDHSRGADVKAQATICAQYKIAVTLL 1472 (1630)
Q Consensus 1398 ~~~~~~~~~~~~~~~~~~-~~~lk~g~~~~~~gkf~ea~~~F~~il~----~~v~~~~e~~e~~~~i~icreY~~a~~ll 1472 (1630)
...+| .++.+++. ..+|++||++||.|||.||+++||+||+ .+|++++|++|++++|+||||||+|+++
T Consensus 978 ----~~~~P-~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~- 1051 (1202)
T KOG0292|consen 978 ----KQGLP-AVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSV- 1051 (1202)
T ss_pred ----hccCC-cccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhhee-
Confidence 11222 67888876 5699999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHHhhccCCCCccccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccCC-ccHHHHHH
Q 000346 1473 QEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP-ASKQDELR 1551 (1630)
Q Consensus 1473 ~El~R~~~~~~~~~~~~~~~R~~ELaayft~~~Lq~~H~~l~Lr~Am~~~~K~kN~~tAa~fa~rLl~~~p-~~~~~~ar 1551 (1630)
|++||+ ++ ++ +.+|+||||||||||+|||.|++||||+||+.+||+|||+||+.||+|||+++| +++++|||
T Consensus 1052 -E~~Rr~-l~-~~----~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1052 -ELERRK-LK-KP----NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred -eeeecc-cC-Cc----hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999 73 22 455999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhcCCCCcccC--CCCCCceeeecccccccC-CCccccCCCCceecCCC-CCCCccccceeecCCCCCC
Q 000346 1552 SLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLCGAKFSALS-APGCIICGMGSIKRSDALA 1622 (1630)
Q Consensus 1552 kil~~ce~~~~d~~~i~--~~~~~f~iC~~t~~pIy~-~~~v~Cp~cga~y~~~~-g~~C~vC~~~~IG~~~~~~ 1622 (1630)
|++++||++|+|+++|+ ++ |||+||++||+|||+ .|.++||||||+|++.+ |.+|+||++++||+ |+.+
T Consensus 1125 ki~~a~eknp~Da~~l~yd~~-n~f~iC~~t~~Piy~g~p~~~cp~cga~y~~~~~g~iCtvc~V~~ig~-~~~G 1197 (1202)
T KOG0292|consen 1125 KIKQAAEKNPTDAYELNYDPH-NPFVICGATYVPIYRGRPDVSCPYCGACFVPSSKGNICTVCDVGVIGA-DASG 1197 (1202)
T ss_pred HHHHHhhcCcccccccCcccC-CCeeEecccceeeecCCCCcCCCcccceeccccCCceeeeeeeeeecC-cccc
Confidence 99999999999999999 88 999999999999999 99999999999999999 99999999999999 6543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-103 Score=918.66 Aligned_cols=691 Identities=19% Similarity=0.272 Sum_probs=588.5
Q ss_pred CCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcC-CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 16 RGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 16 rg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~-~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
|++ ||+|++|||..+|++++.. |+|.|||++|...++.++. +.||++..|.+. .+|+++|++|+.||||+++|
T Consensus 12 rSd----RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSD----RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCC----ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec-cceEEEecCCceEEEEeccc
Confidence 556 9999999999999999999 9999999999999999995 499999999999 99999999999999999999
Q ss_pred CcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEE
Q 000346 94 EQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLY 172 (1630)
Q Consensus 94 ge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLa 172 (1630)
++....|. ++.|..+++..||+.++++++|+|. +|++||+...+ .|.+++.+|++.|++++|+| |.+.++
T Consensus 87 ~ekV~~Fe-------AH~DyIR~iavHPt~P~vLtsSDDm-~iKlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 87 GEKVKTFE-------AHSDYIRSIAVHPTLPYVLTSSDDM-TIKLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ceeeEEee-------ccccceeeeeecCCCCeEEecCCcc-EEEEeeccCce-eeeeEEcCcceEEEEEEecCCCcccee
Confidence 99988888 7789999999999999999999999 99999999998 99999999999999999999 667999
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC--CCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCe
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 249 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP--Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~V 249 (1630)
++|.|++|+||.+.+..+.+++++ +..|+ +++|.+ |.+||++|++|.+++|||+++..| ++++.||..+|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN-----~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C--V~TLeGHt~Nv 230 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVN-----CVDYYTGGDKPYLISGADDLTIKVWDYQTKSC--VQTLEGHTNNV 230 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcc-----eEEeccCCCcceEEecCCCceEEEeecchHHH--HHHhhcccccc
Confidence 999999999999999999999998 99999 999998 558999999999999999999996 99999999999
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCC
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLN 329 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~N 329 (1630)
+.+.|||.-.+|+|||+||+||||+..+-.. +. ...|.+.|+|+++.|++.+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~l-----------E~-----------------tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKL-----------EK-----------------TLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceeh-----------hh-----------------hhhcCCceEEEEeecCCCC
Confidence 9999999999999999999999999775443 11 1137789999999999999
Q ss_pred ceeEeeccccCCCcccchhhhhhhccccceehhhcccCCchhhhHhhhhccCCcchhhhHHHHHHHHHhhccCCccchhh
Q 000346 330 LAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTIS 409 (1630)
Q Consensus 330 l~Alvfa~~~~~D~~kN~~~~~~egr~ql~~vlq~~r~~~~~~~~e~l~~lgss~~~a~~~~~~q~~~~~~~~~~~~~i~ 409 (1630)
.+++.|+. ...++++.|+ |+..+|+++|
T Consensus 283 ~i~vG~De--------------------g~i~v~lgre-------eP~vsMd~~g------------------------- 310 (794)
T KOG0276|consen 283 KIAVGFDE--------------------GSVTVKLGRE-------EPAVSMDSNG------------------------- 310 (794)
T ss_pred eEEEeccC--------------------CcEEEEccCC-------CCceeecCCc-------------------------
Confidence 99988777 4667888888 5566666655
Q ss_pred HHHHhhhhcccccccccccCCccCCceeeeeccccccccCCccccccccccccccccccccccceeeeecccceeecccc
Q 000346 410 DIARKAFLYSHFMEGHAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLC 489 (1630)
Q Consensus 410 ~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~l~ 489 (1630)
|+.|+.+.++..+ .+|.+- .+- ..-||..|
T Consensus 311 -----------------KIiwa~~~ei~~~-----~~ks~~--~~~--------------------ev~DgErL------ 340 (794)
T KOG0276|consen 311 -----------------KIIWAVHSEIQAV-----NLKSVG--AQK--------------------EVTDGERL------ 340 (794)
T ss_pred -----------------cEEEEcCceeeee-----eceecc--Ccc--------------------cccCCccc------
Confidence 4444444555544 111111 000 01133333
Q ss_pred CCCccchhcccccCCCcceecccccccCCCCcEEEEEeecCCCceeEEEeecccccccccCC-CCCcccccEEEeCCCCC
Q 000346 490 SGADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSK-SSTVKGRDAAFIGPNED 568 (1630)
Q Consensus 490 ~~~~~~~~~l~~~~~g~~e~~p~~l~~sp~~~~~~v~~~~~~~~~e~~iy~~~~~~~~~~~~-g~~~~~~~~~f~g~~~~ 568 (1630)
.|..|++|++|+|||+|.||||||||.|||| |||||| |+++||||. | +|++|+| +.++|
T Consensus 341 --------~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcgd-----GEyiIy---Tala~RnK~fG---~~~eFvw-~~dsn 400 (794)
T KOG0276|consen 341 --------PLSVKELGSVEIYPQTLAHSPNGRFVVVCGD-----GEYIIY---TALALRNKAFG---SGLEFVW-AADSN 400 (794)
T ss_pred --------cchhhhccccccchHHhccCCCCcEEEEecC-----ccEEEE---Eeeehhhcccc---cceeEEE-cCCCC
Confidence 3788999999999999999999999999999 999999 799999997 9 9999999 56888
Q ss_pred eEEEEeCCCceEEEEEccCcccccccccCCcccccCCCCCcCcccccCCcccccccccceecccCCCceeEEeecCCeEE
Q 000346 569 QFAILDDDKTGLALYILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIESTLMFACDGDQIG 648 (1630)
Q Consensus 569 ~~ail~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~p~~~~l~~~~~~~~i~ 648 (1630)
.||++|+++..+..+||++. ++++ .+.-.++||+ +.|+.+++.++++
T Consensus 401 e~avRes~~~vki~knfke~-----------------------ksi~------~~~~~e~i~g----g~Llg~~ss~~~~ 447 (794)
T KOG0276|consen 401 EFAVRESNGNVKIFKNFKEH-----------------------KSIR------PDMSAEGIFG----GPLLGVRSSDFLC 447 (794)
T ss_pred eEEEEecCCceEEEecceec-----------------------cccc------cccceeeecC----CceEEEEeCCeEE
Confidence 99999987665555555522 4555 3334899998 4555689999999
Q ss_pred EeecccccccccccccccccccccceeeEecccceEEEEEeccCCCceEEEEEeeeeEEEEccchhhhhhccc----cCC
Q 000346 649 MAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLDILASSST----KFD 724 (1630)
Q Consensus 649 ~~~~~~~yd~~~~~~~~i~~~~~~~~~~~~~~~e~V~~v~W~~~~~g~~~ai~t~~~i~i~~~~l~~~~~~~~----~~~ 724 (1630)
| |||+++.++ |+|++.+. .|+|+++ |++|||.++..+||+.+|.+.+....| -.+
T Consensus 448 f------ydW~~~~lV---------rrI~v~~k----~v~w~d~--g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~e 506 (794)
T KOG0276|consen 448 F------YDWESGELV---------RRIEVTSK----HVYWSDN--GELVAIAGDDSFYILKFNADAVANAVEQGIEVTE 506 (794)
T ss_pred E------EEcccceEE---------EEEeeccc----eeEEecC--CCEEEEEecCceeEEEecHHHHHHHHhcCCCCcc
Confidence 9 999998754 89999888 8999999 999999999999999999998766555 223
Q ss_pred CC-----------CCceeeEeEecCeEEEEcccceEEEEeCCceeEEEEecCCceEEEEEec--CcEEEecCCCCCcCCC
Q 000346 725 KG-----------LPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALN--DRLLLANPTEINPRQK 791 (1630)
Q Consensus 725 ~~-----------~~~i~S~~W~g~~~iytT~t~i~y~~~~G~~~~i~~~~~~~~~L~g~l~--~r~~~~~~~~~~~~~~ 791 (1630)
+| .|+|++|.|+|+||||||++++.||+++|++.+|.|+|++ +||+||++ +|+||. |
T Consensus 507 eGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~-mylLgy~~~~~rvYL~---------D 576 (794)
T KOG0276|consen 507 EGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI-MYLLGYVANDNRVYLH---------D 576 (794)
T ss_pred hhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc-hhheeeeecCCEEEEe---------e
Confidence 33 4999999999999999999999999999999999999999 79999997 999999 8
Q ss_pred CceEEee-ee-cchhhhHHHhhhhhHHHHHHhhcHHHHHHHHhhccccCCCChhHHHHHHc--CCCCcccchhhccccCC
Q 000346 792 KGIEIKS-CL-VGLLEPLLIGFATMQQYFEQKLDLSEILYQITSRFDSLRITPRSLDILAK--GPPVCGDLAVSLSQAGP 867 (1630)
Q Consensus 792 ~~~~i~s-~l-l~llE~ll~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~lAl~l~~~~~ 867 (1630)
|+.+|.+ ++ +.++|| . ++.++.++......+++++... +.+++. ++++|+|-||++++|++
T Consensus 577 ke~nVi~y~l~l~vley------------q-t~vmrrd~~~a~~vLp~I~k~~--rt~va~Fle~~g~~e~AL~~s~D~d 641 (794)
T KOG0276|consen 577 KELNVISYKILLEVLEY------------Q-TLVLRRDLEVADGVLPTIPKEI--RTKVAHFLESQGMKEQALELSTDPD 641 (794)
T ss_pred cccceEeEeeehHHHHH------------H-HHhhhccccccccccccCchhh--hhhHHhHhhhccchHhhhhcCCChh
Confidence 8877666 33 888885 1 3444555555555566665443 333333 55669999999999977
Q ss_pred ccccchhhhHHHhcCCHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhhHHHHHH
Q 000346 868 QFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYESILDLF 947 (1630)
Q Consensus 868 ~~~~~~rf~lA~~~g~l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~lg~~al~~g~~~~a~~~~~~~~d~~~Ll~Ly 947 (1630)
| ||+||+|+|+|+.|+++|.+.. ...|||+||++||..|++.+|+|||++++||.+||+||
T Consensus 642 ~-----rFelal~lgrl~iA~~la~e~~--------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~ 702 (794)
T KOG0276|consen 642 Q-----RFELALKLGRLDIAFDLAVEAN--------------SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLY 702 (794)
T ss_pred h-----hhhhhhhcCcHHHHHHHHHhhc--------------chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhh
Confidence 7 9999999999999999998874 57899999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHccCChhHHHHH
Q 000346 948 ICHLNPSAMRRLAQRLEEEGANPELRRYC 976 (1630)
Q Consensus 948 ~~~g~~~~l~~l~~~~~~~~~~~~~~~~~ 976 (1630)
+++||.++|.+|++.|+++|.+ .+-|.|
T Consensus 703 t~~g~~~~l~~la~~~~~~g~~-N~AF~~ 730 (794)
T KOG0276|consen 703 TSSGNAEGLAVLASLAKKQGKN-NLAFLA 730 (794)
T ss_pred hhcCChhHHHHHHHHHHhhccc-chHHHH
Confidence 9999999999999999998844 444443
|
|
| >PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=634.35 Aligned_cols=233 Identities=20% Similarity=0.382 Sum_probs=183.8
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhh-HHHHHHHHHHHhcCChHHHHHHHHHHHH----HHhc
Q 000346 1373 STQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAA-SVCFKTGLAHLEQNQLPDALSCFDEAFL----ALAK 1447 (1630)
Q Consensus 1373 ~~~pl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~lk~g~~~~~~gkf~ea~~~F~~il~----~~v~ 1447 (1630)
+.+||.++.++.+++.. ++...| .++++++. .++||.|||+||+|||+||+..||+||| ++|+
T Consensus 173 ~~p~l~~~~~r~~~~~~-----------~~~~lP-~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~ 240 (422)
T PF06957_consen 173 SLPPLPSYIRRNWDESN-----------PKNGLP-AIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVE 240 (422)
T ss_dssp TTS-EEEEEBCTTTTSS-----------SCCG-B-B----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BS
T ss_pred CCCCccccccCCccccc-----------cccCCC-cCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec
Confidence 34677788887777632 233444 56777775 7799999999999999999999999999 8899
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCCccccchHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHccc
Q 000346 1448 DHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQN 1527 (1630)
Q Consensus 1448 ~~~e~~e~~~~i~icreY~~a~~ll~El~R~~~~~~~~~~~~~~~R~~ELaayft~~~Lq~~H~~l~Lr~Am~~~~K~kN 1527 (1630)
+++|++|++++|+||||||+||+| |++||+ ++ +++ +.++||+||||||||||+|||.|++|+||+||+++||+||
T Consensus 241 ~~~E~~e~~eli~icrEYilgl~i--El~Rr~-l~-~~~-~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KN 315 (422)
T PF06957_consen 241 SREEEDEAKELIEICREYILGLSI--ELERRE-LP-KDP-VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKN 315 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH--HHHHCT-S--TTT-HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh-cc-ccc-hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 999999 74 333 4567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCC-ccHHHHHHHHHHHHhhcCCCCcccC--CCCCCceeeecccccccC-CCccccCCCCceecCCC
Q 000346 1528 YAYAKQMLELLLSKAP-ASKQDELRSLIDMCVQRGLSNKSID--PLEDPSQFCAATLSRLST-IGYDVCDLCGAKFSALS 1603 (1630)
Q Consensus 1528 ~~tAa~fa~rLl~~~p-~~~~~~arkil~~ce~~~~d~~~i~--~~~~~f~iC~~t~~pIy~-~~~v~Cp~cga~y~~~~ 1603 (1630)
|+||++||||||+++| +++++||||||++|||+++|+++|+ ++ +||+||++||||||+ ++.|+||||||+|+|+|
T Consensus 316 f~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa~~i~yD~~-npF~ICa~s~tPIY~G~~~v~CP~cgA~y~~~~ 394 (422)
T PF06957_consen 316 FITAASFARRLLELNPSPEVAEQARKILQACERNPTDAHEIDYDER-NPFDICAASYTPIYRGSPSVKCPYCGAKYHPEY 394 (422)
T ss_dssp HHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BSS--S--TT-S-EEEBTTT--EEETTS-EEE-TTT--EEEGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCceecCCCCC-CCceeeecccccccCCCCCeeCCCCCCccChhh
Confidence 9999999999999999 9999999999999999999999998 88 999999999999999 99999999999999999
Q ss_pred -CCCCccccceeecCCCCCCCCC
Q 000346 1604 -APGCIICGMGSIKRSDALAGPV 1625 (1630)
Q Consensus 1604 -g~~C~vC~~~~IG~~~~~~~~~ 1625 (1630)
|++|+||+|++||+ |+ .|-+
T Consensus 395 kG~lC~vC~l~~IG~-~a-~GLr 415 (422)
T PF06957_consen 395 KGQLCPVCELSEIGA-DA-SGLR 415 (422)
T ss_dssp TTSB-TTTTTBBTT-----S---
T ss_pred CCCCCCCCcceeeCC-cc-eeeE
Confidence 99999999999999 55 3443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=596.21 Aligned_cols=395 Identities=19% Similarity=0.283 Sum_probs=283.8
Q ss_pred ceeeccccCC---CccchhcccccCCCcceecccccccCCCCcEEEEEeecCCCceeEEEeecccccccccCC-CCCccc
Q 000346 482 NLVAYNLCSG---ADSIYRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSK-SSTVKG 557 (1630)
Q Consensus 482 ~~~~~~l~~~---~~~~~~~l~~~~~g~~e~~p~~l~~sp~~~~~~v~~~~~~~~~e~~iy~~~~~~~~~~~~-g~~~~~ 557 (1630)
+|.++|+..+ .+...-.+..+.+|+++.+|++|+||||||+|+||++ +||+|| |+++|||++ | +|
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~-----geY~iy---t~~~~r~k~~G---~g 71 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGD-----GEYEIY---TALAWRNKAFG---SG 71 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEET-----TEEEEE---ETTTTEEEEEE---E-
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcC-----CEEEEE---EccCCcccccC---ce
Confidence 5666676666 2223344677889999999999999999999999999 999999 588999997 8 99
Q ss_pred ccEEEeCCCCCeEEEEeCCCceEEE-EEccCcccccccccCCcccccCCCCCcCcccccCCcccccccccceecccCCCc
Q 000346 558 RDAAFIGPNEDQFAILDDDKTGLAL-YILKGVTLQEAADENNGVVDHNQSTDTNVGSVQGPLQLMFESEVDRIFSTPIES 636 (1630)
Q Consensus 558 ~~~~f~g~~~~~~ail~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~p~~~ 636 (1630)
.+|||+++ |+||++|++ ..+.| +|+++... ++++ ++..+++||+ |
T Consensus 72 ~~~vw~~~--n~yAv~~~~-~~I~I~kn~~~~~~---------------------k~i~------~~~~~~~If~----G 117 (443)
T PF04053_consen 72 LSFVWSSR--NRYAVLESS-STIKIYKNFKNEVV---------------------KSIK------LPFSVEKIFG----G 117 (443)
T ss_dssp SEEEE-TS--SEEEEE-TT-S-EEEEETTEE-TT--------------------------------SS-EEEEE-----S
T ss_pred eEEEEecC--ccEEEEECC-CeEEEEEcCccccc---------------------eEEc------CCcccceEEc----C
Confidence 99999874 589999984 55777 56653332 3455 4456999998 6
Q ss_pred eeEEeecCCeEEEeecccccccccccccccccccccceeeEecccceEEEEEeccCCCceEEEEEeeeeEEEEccchh--
Q 000346 637 TLMFACDGDQIGMAKLVQGYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLD-- 714 (1630)
Q Consensus 637 ~l~~~~~~~~i~~~~~~~~yd~~~~~~~~i~~~~~~~~~~~~~~~e~V~~v~W~~~~~g~~~ai~t~~~i~i~~~~l~-- 714 (1630)
.|++++++++|+| |||+++... ++|++.+ |++|+|+++ |++|||+|++.|+|++++++
T Consensus 118 ~LL~~~~~~~i~~------yDw~~~~~i---------~~i~v~~---vk~V~Ws~~--g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 118 NLLGVKSSDFICF------YDWETGKLI---------RRIDVSA---VKYVIWSDD--GELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp SSEEEEETTEEEE------E-TTT--EE---------EEESS-E----EEEEE-TT--SSEEEEE-S-SEEEEEE-HHHH
T ss_pred cEEEEECCCCEEE------EEhhHccee---------eEEecCC---CcEEEEECC--CCEEEEEeCCeEEEEEecchhc
Confidence 6667778789999 999998754 6666653 789999999 89999999999999999999
Q ss_pred ----------hhhhccc-cCCCCCCceeeEeEecCeEEEEcccceEEEEeCCceeEEEEecCCceEEEEEec--CcEEEe
Q 000346 715 ----------ILASSST-KFDKGLPSFRSLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLVGALN--DRLLLA 781 (1630)
Q Consensus 715 ----------~~~~~~~-~~~~~~~~i~S~~W~g~~~iytT~t~i~y~~~~G~~~~i~~~~~~~~~L~g~l~--~r~~~~ 781 (1630)
.++.++| .. +||||+|+++||||||.+|++| ++||++++|+|+|.| +||+||++ +|+|++
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~-----~IkSg~W~~d~fiYtT~~~lkY-l~~Ge~~~i~~ld~~-~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISE-----RIKSGCWVEDCFIYTTSNHLKY-LVNGETGIIAHLDKP-LYLLGYLPKENRLYLI 250 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETTEEEEE-TTEEEE-EETTEEEEEEE-SS---EEEEEETTTTEEEEE
T ss_pred ccccccCchhceEEEEEecc-----eeEEEEEEcCEEEEEcCCeEEE-EEcCCcceEEEcCCc-eEEEEEEccCCEEEEE
Confidence 7777777 55 9999999999999999999999 799999999999999 79999999 999999
Q ss_pred cCCCCCcCCCCceEEeeeecchhhhHHHhhhhhHHHHHHhhcHHHHHHHH--hhccccCC--CChhHHHHHHcCCCCccc
Q 000346 782 NPTEINPRQKKGIEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEILYQI--TSRFDSLR--ITPRSLDILAKGPPVCGD 857 (1630)
Q Consensus 782 ~~~~~~~~~~~~~~i~s~ll~llE~ll~g~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~--~~~~~l~~l~~~~~~~~~ 857 (1630)
|++.+|.++.+.+.|+ .+..+.+...++. +++-+ .+.+++++ ..++++.+|.++| |+|
T Consensus 251 ---------Dr~~~v~~~~ld~~~~-~fk~av~~~d~~~------v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G--~~e 312 (443)
T PF04053_consen 251 ---------DRDGNVISYELDLSEL-EFKTAVLRGDFEE------VLRMIAASNLLPNIPKDQGQSIARFLEKKG--YPE 312 (443)
T ss_dssp ----------TT--EEEEE--HHHH-HHHHHHHTT-HHH-----------HHHHTGGG--HHHHHHHHHHHHHTT---HH
T ss_pred ---------ECCCCEEEEEECHHHH-HHHHHHHcCChhh------hhhhhhhhhhcccCChhHHHHHHHHHHHCC--CHH
Confidence 8888887877777773 4444443333333 22211 12222332 2577888999998 999
Q ss_pred chhhccccCCccccchhhhHHHhcCCHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 000346 858 LAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVI 937 (1630)
Q Consensus 858 lAl~l~~~~~~~~~~~rf~lA~~~g~l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~lg~~al~~g~~~~a~~~~~~~ 937 (1630)
+||++++| +++||+|||++|||++|+++|+++. ..++||+||++||++||+++||+||+++
T Consensus 313 ~AL~~~~D-----~~~rFeLAl~lg~L~~A~~~a~~~~--------------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 313 LALQFVTD-----PDHRFELALQLGNLDIALEIAKELD--------------DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHSS------HHHHHHHHHHCT-HHHHHHHCCCCS--------------THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHhhcCC-----hHHHhHHHHhcCCHHHHHHHHHhcC--------------cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999998 4569999999999999999997753 4679999999999999999999999999
Q ss_pred hhhhHHHHHHHHcCCHHHHHHHHHHHHHccCChhHHHH--------HHHHHhhhccC
Q 000346 938 ADYESILDLFICHLNPSAMRRLAQRLEEEGANPELRRY--------CERILRVRSTG 986 (1630)
Q Consensus 938 ~d~~~Ll~Ly~~~g~~~~l~~l~~~~~~~~~~~~~~~~--------~~~i~~~r~~~ 986 (1630)
+||++|+|||+++||.++|+||+++|+++ ++.++.|+ .+++..++++|
T Consensus 374 ~d~~~L~lLy~~~g~~~~L~kl~~~a~~~-~~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 374 KDFSGLLLLYSSTGDREKLSKLAKIAEER-GDINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cCccccHHHHHHhCCHHHHHHHHHHHHHc-cCHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999984 58888888 56666778888
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=369.33 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=195.5
Q ss_pred CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEE
Q 000346 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG 140 (1630)
Q Consensus 61 ~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwD 140 (1630)
..+|.+++|||. ..|++++-..|.|++||++-+.+.-.|. .+....+.+.|||+++.+++|++|. .|++|+
T Consensus 9 SsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDy-kIkVWn 79 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDY-KIKVWN 79 (1202)
T ss_pred cccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhh-------ccCCccceeeecCCCCeEEecCCcc-EEEEEe
Confidence 378999999999 9999999999999999998776543443 2344457799999999999999999 999999
Q ss_pred cccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEE
Q 000346 141 TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFV 219 (1630)
Q Consensus 141 l~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaS 219 (1630)
..+. .|+.++.+|-.+|+.+.||+.-.+++|+|+|.+|+||+..+.+++.++.+ ...|. |..|||....+++
T Consensus 80 Yk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM-----cAqFhptEDlIVS 152 (1202)
T KOG0292|consen 80 YKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM-----CAQFHPTEDLIVS 152 (1202)
T ss_pred cccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE-----eeccCCccceEEE
Confidence 9988 99999999999999999999999999999999999999999999999998 88888 9999999999999
Q ss_pred EeCCCeEEEEECCC--------C-------------------CceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEE
Q 000346 220 GDRRGTLLAWDVSI--------E-------------------RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 272 (1630)
Q Consensus 220 gS~DGtVrVWDl~t--------g-------------------k~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrI 272 (1630)
+|-|.+|+|||+.- + ...+...+.||...|+-++|||...+|+||+.|+.|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 99999999999852 1 12234678999999999999999999999999999999
Q ss_pred EEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCcee
Q 000346 273 WKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 332 (1630)
Q Consensus 273 WDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~A 332 (1630)
|.++.......- .+ - -....+.++.|||+.|++-
T Consensus 233 WrmnetKaWEvD----tc--------------r--------gH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 233 WRMNETKAWEVD----TC--------------R--------GHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred EEeccccceeeh----hh--------------h--------cccCCcceEEecCccceeE
Confidence 998743321111 11 0 1134567899999999865
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=293.63 Aligned_cols=242 Identities=18% Similarity=0.226 Sum_probs=203.9
Q ss_pred CcEEEEEcCCCCEEEEEECC-eEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 23 QPHEAAFHPNQALIAVAIGT-YIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~G-tI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.|-|+.|+|+|..|++|+.+ ++++||+.|...+.+.++| .+|.|++|+|| |.+||+|+.||+|++||.++|+.
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCccccc
Confidence 89999999999999999994 5999999999999999966 99999999999 99999999999999999988876
Q ss_pred ---------EEEEcC-----CCCe-EEeecCCeEEEEEcCC---------------------CCE---------------
Q 000346 97 ---------FVLHSP-----EKKM-ESISVDTEVHLALTPL---------------------QPV--------------- 125 (1630)
Q Consensus 97 ---------~v~fsp-----dg~~-asgs~Dgtv~L~~spd---------------------g~~--------------- 125 (1630)
+++|.| ..+. ++++.|+.+.||.... ..+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRA 275 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEc
Confidence 455544 2223 5555566655554211 123
Q ss_pred ---------------------------------------------------------------EEEEecCCcEEEEEEcc
Q 000346 126 ---------------------------------------------------------------VFFGFHRRMSVTVVGTV 142 (1630)
Q Consensus 126 ---------------------------------------------------------------LaSgs~Dg~tI~IwDl~ 142 (1630)
+++|++|. ++.+|+-.
T Consensus 276 ~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~-tlflW~p~ 354 (480)
T KOG0271|consen 276 LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF-TLFLWNPF 354 (480)
T ss_pred cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc-eEEEeccc
Confidence 44444444 44455444
Q ss_pred cCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEe
Q 000346 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGD 221 (1630)
Q Consensus 143 sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS 221 (1630)
..+ +++..+.+|..-|..+.|+||++++|++|-|..|++||-++|+.+.+|.+ -..|. .++|+.|.++|++|+
T Consensus 355 ~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY-----qvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 355 KSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY-----QVAWSADSRLLVSGS 428 (480)
T ss_pred ccc-cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE-----EEEeccCccEEEEcC
Confidence 333 45555688999999999999999999999999999999999999999996 77887 999999999999999
Q ss_pred CCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 222 RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 222 ~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
.|.+++|||+++.+ +...+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 429 kDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999988 4788999999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=292.84 Aligned_cols=242 Identities=16% Similarity=0.199 Sum_probs=226.0
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCC-CCCEEEEEECCCeEEEEECCCCcE---
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd-~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
.|..+.|+.|+..|++|+- |.++||+..+...+.+|.+| ..|.++.|+|. ++..+++|+.||++++|++.+...
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~ 256 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD 256 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh
Confidence 5788999999999999999 88999999999999999977 99999999998 477999999999999999987543
Q ss_pred ---------EEEEcCCCCe-EEeecCCeEE----------------------EEEcCCCCEEEEEecCCcEEEEEEcccC
Q 000346 97 ---------FVLHSPEKKM-ESISVDTEVH----------------------LALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 97 ---------~v~fspdg~~-asgs~Dgtv~----------------------L~~spdg~~LaSgs~Dg~tI~IwDl~sg 144 (1630)
.+.|+|+|++ .+++.|.+++ +.++++|..+++|+.|. .-++||++++
T Consensus 257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtg 335 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTG 335 (459)
T ss_pred hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-hhheeecccC
Confidence 7899999999 9999888744 45689999999999999 8999999999
Q ss_pred CccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC-CCCEEEEEeC
Q 000346 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGDR 222 (1630)
Q Consensus 145 ~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS~ 222 (1630)
.++..+.+|...|.+++|+|+|..||+|+.|++++|||++....+.++.. .+-|. .|.|+| .|.+|+|++.
T Consensus 336 --r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS-----~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 336 --RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS-----QVKYSPQEGYFLVTASY 408 (459)
T ss_pred --cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh-----heEecccCCeEEEEccc
Confidence 89999999999999999999999999999999999999999999998886 88888 999999 7899999999
Q ss_pred CCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 223 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 223 DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
|++++||.-.+..+ ++++.||.+.|.++..++|+.+|+|++.|+++++|.
T Consensus 409 D~t~kiWs~~~~~~--~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSP--LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCccc--chhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999886 999999999999999999999999999999999995
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=285.69 Aligned_cols=232 Identities=19% Similarity=0.201 Sum_probs=206.2
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCC-cEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tg-e~~v~ 99 (1630)
.|++..|-+..+|+++|++ ..|+||+++|++.++.|+.| .-|++++.||+ ..+++++|+|.+|++||++.+ .|...
T Consensus 57 PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 57 PVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred chhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeE
Confidence 6888899999999999999 66999999999999999955 89999999999 999999999999999999765 23444
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC--CCEEEEEeC
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR--LPVLYVAYA 176 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd--g~lLaSgS~ 176 (1630)
|. |+......+++.|.. +.+++++-|+ +|++|.+.+. .+..++.+|...|+|+.+-+. ..+|++|++
T Consensus 136 fe-------GH~HyVMqv~fnPkD~ntFaS~sLDr-TVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 136 FE-------GHEHYVMQVAFNPKDPNTFASASLDR-TVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred Ec-------CcceEEEEEEecCCCccceeeeeccc-cEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEEecCC
Confidence 54 555566788888865 5899999999 9999999888 789999999999999999884 469999999
Q ss_pred CCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEe
Q 000346 177 DGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL 255 (1630)
Q Consensus 177 DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfS 255 (1630)
|.+|+|||..+..|++++++ .+.|. .+.|||.-+++++|+.||+|+||+-.+.+. ..++.-....|+|++-+
T Consensus 206 D~tiKvWDyQtk~CV~TLeGHt~Nvs-----~v~fhp~lpiiisgsEDGTvriWhs~Ty~l--E~tLn~gleRvW~I~~~ 278 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEGHTNNVS-----FVFFHPELPIIISGSEDGTVRIWNSKTYKL--EKTLNYGLERVWCIAAH 278 (794)
T ss_pred CceEEEeecchHHHHHHhhcccccce-----EEEecCCCcEEEEecCCccEEEecCcceeh--hhhhhcCCceEEEEeec
Confidence 99999999999999999997 88898 999999999999999999999999998773 56676667899999999
Q ss_pred CCCCEEEEEECCCceEE
Q 000346 256 PMLRLLVTLCRDGSLQV 272 (1630)
Q Consensus 256 PdG~lLaSgS~DGtIrI 272 (1630)
+.++.++.|...|.|.+
T Consensus 279 k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 279 KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCCCeEEEeccCCcEEE
Confidence 99999999998887743
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=258.13 Aligned_cols=246 Identities=18% Similarity=0.181 Sum_probs=222.4
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE--
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-- 96 (1630)
..+|.++.|++|.++|++++. |.+.|||.-|...++.+. ...+|..++|+|. |+++|+|+-|+...||++.+.+.
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccc
Confidence 349999999999999999999 889999999999988888 4599999999999 99999999999999999985521
Q ss_pred ----------------EEEEcCCCCeEEeecCCeEEEEE----------------------cC-CCCEEEEEecCCcEEE
Q 000346 97 ----------------FVLHSPEKKMESISVDTEVHLAL----------------------TP-LQPVVFFGFHRRMSVT 137 (1630)
Q Consensus 97 ----------------~v~fspdg~~asgs~Dgtv~L~~----------------------sp-dg~~LaSgs~Dg~tI~ 137 (1630)
+..|-.+++.++++.|.++.+|. .| +++.+++|+-|. ..+
T Consensus 134 ~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-~ak 212 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-SAK 212 (343)
T ss_pred cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc-cee
Confidence 67788888888888888877765 45 678899999999 999
Q ss_pred EEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEE
Q 000346 138 VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWL 217 (1630)
Q Consensus 138 IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~L 217 (1630)
+||++.+ .+++.+.+|...|.++.|+|+|.-|++|++|+++|+||++..+.+..+.++..+ .|+.+++|+-.|++|
T Consensus 213 lWD~R~~--~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~--~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 213 LWDVRSG--QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII--CGITSVAFSKSGRLL 288 (343)
T ss_pred eeeccCc--ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc--CCceeEEEcccccEE
Confidence 9999999 899999999999999999999999999999999999999999988888863332 255599999999999
Q ss_pred EEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 218 FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 218 aSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
++|..|.++.+||.-.++. +..+.+|.+.|+++..+|||.-++|||.|.++|||.
T Consensus 289 fagy~d~~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeecCCceeEeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999988874 888999999999999999999999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=294.80 Aligned_cols=239 Identities=17% Similarity=0.238 Sum_probs=217.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCC-------------------------------cEEEEEcCC-CCEEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTG-------------------------------SRIASIDIN-SPVVRMAY 69 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg-------------------------------~~i~tl~~~-~~VtsVaf 69 (1630)
.+.|..|++|+.+||.|.. ..|++|.+... ...+++-+| ++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 5899999999998888888 45999988621 123345555 99999999
Q ss_pred eCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccce
Q 000346 70 SPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1630)
Q Consensus 70 Spd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i 149 (1630)
+|+ .++|+++|+|+++|+|.+.+..+.+.+. |+...++.+.+.|-|-+++++++|+ +-++|..... .+.
T Consensus 460 sPd-~rfLlScSED~svRLWsl~t~s~~V~y~-------GH~~PVwdV~F~P~GyYFatas~D~-tArLWs~d~~--~Pl 528 (707)
T KOG0263|consen 460 SPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYK-------GHLAPVWDVQFAPRGYYFATASHDQ-TARLWSTDHN--KPL 528 (707)
T ss_pred ccc-ccceeeccCCcceeeeecccceeEEEec-------CCCcceeeEEecCCceEEEecCCCc-eeeeeecccC--Cch
Confidence 999 9999999999999999999999988888 4455567788999999999999999 9999999876 899
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEE
Q 000346 150 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1630)
Q Consensus 150 ~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrV 228 (1630)
+++.+|-..|.|+.|||+..++++||.|.+||+||+.+|..++.|.+ ..+|. +++|+|+|++|++|+.||.|++
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~-----al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT-----ALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE-----EEEEcCCCceEeecccCCcEEE
Confidence 99999999999999999999999999999999999999999999998 89998 9999999999999999999999
Q ss_pred EECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 229 WDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 229 WDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
||+.+++. +..+.+|++.|.++.|+.||..||+|+.|.+|++||+....
T Consensus 604 WDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 604 WDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999885 88899999999999999999999999999999999987443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=269.93 Aligned_cols=258 Identities=18% Similarity=0.288 Sum_probs=220.6
Q ss_pred CCccceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEE
Q 000346 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVV 78 (1630)
Q Consensus 1 meW~t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLa 78 (1630)
|||...+++ +..-||.. ++.|++++|||+++|+|++ |.|+|||...|-|+.++. |.+.|+.+.|+.. ++.++
T Consensus 335 weWqsEsYV-lKQQgH~~----~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-g~~ll 408 (893)
T KOG0291|consen 335 WEWQSESYV-LKQQGHSD----RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-GNVLL 408 (893)
T ss_pred EEeecccee-eecccccc----ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec-CCEEE
Confidence 588888875 34455777 9999999999999999999 779999999999999999 5599999999999 99999
Q ss_pred EEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCC
Q 000346 79 AILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1630)
Q Consensus 79 SgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ 158 (1630)
+.+-||+||.||+...++.-+|....+. +-.+++..|.|..++.|+.|...|.+|++++| +.+-++.||.++
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~P~p~------QfscvavD~sGelV~AG~~d~F~IfvWS~qTG--qllDiLsGHEgP 480 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTSPEPI------QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG--QLLDILSGHEGP 480 (893)
T ss_pred EeecCCeEEeeeecccceeeeecCCCce------eeeEEEEcCCCCEEEeeccceEEEEEEEeecC--eeeehhcCCCCc
Confidence 9999999999999888775555432222 22567888999999999999999999999999 899999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCce
Q 000346 159 IVNLACHPRLPVLYVAYADGLIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS 237 (1630)
Q Consensus 159 ItsLafSPdg~lLaSgS~DGtIrIWDl~t-~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~ 237 (1630)
|.+++|+|++..|+++|.|.+||+||+-. ...+.++.....+. .++|+|||+-|++++-||.|.+||...+..
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl-----~vsfrPdG~elaVaTldgqItf~d~~~~~q- 554 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVL-----AVSFRPDGKELAVATLDGQITFFDIKEAVQ- 554 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecccee-----EEEEcCCCCeEEEEEecceEEEEEhhhcee-
Confidence 99999999999999999999999999754 35667777767777 999999999999999999999999876432
Q ss_pred eEEEe----------------e----ccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 238 MIGII----------------Q----VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 238 lv~tL----------------~----gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
+.++ . ......+.+++++||.+|++|++.+.|++|++....
T Consensus 555 -~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 555 -VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred -eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 1111 1 123678999999999999999999999999987544
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=258.67 Aligned_cols=221 Identities=23% Similarity=0.272 Sum_probs=189.8
Q ss_pred cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCe-EEeecCCeEEEE
Q 000346 53 SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTEVHLA 118 (1630)
Q Consensus 53 ~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~-asgs~Dgtv~L~ 118 (1630)
+|...+.+| ++|.++.|+|+ |..|++|+.|.++|+||+.+... ++.|+|||+. ++++.|+++++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 455666766 89999999998 99999999999999999987643 9999999999 999999998888
Q ss_pred E----------------------------cCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCE
Q 000346 119 L----------------------------TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 119 ~----------------------------spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~l 170 (1630)
. .|....+++++.|+ +|++||+..+ .++..+.+|+.+|+|+.|--+ .+
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg-~vrIWd~~~~--~~~~~lsgHT~~VTCvrwGG~-gl 260 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG-SVRIWDTKLG--TCVRTLSGHTASVTCVRWGGE-GL 260 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC-CEEEEEccCc--eEEEEeccCccceEEEEEcCC-ce
Confidence 6 23446789999999 9999999988 899999999999999999744 48
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEec-CCcee------------------------------------------------
Q 000346 171 LYVAYADGLIRAYNIHTYAVHYTLQL-DNTIK------------------------------------------------ 201 (1630)
Q Consensus 171 LaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~------------------------------------------------ 201 (1630)
+++||.|++|++|+...|.+.+++.+ ..+|+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 99999999999999876554444432 11111
Q ss_pred ---------e-------------cC----cccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEe
Q 000346 202 ---------L-------------LG----AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL 255 (1630)
Q Consensus 202 ---------I-------------sG----i~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfS 255 (1630)
+ .| +..+.|+||++|+++++.|..|++||.++|+. +.+|++|-..|..++|+
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~--lasfRGHv~~VYqvaws 418 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF--LASFRGHVAAVYQVAWS 418 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--hhhhhhccceeEEEEec
Confidence 0 11 45899999999999999999999999999995 89999999999999999
Q ss_pred CCCCEEEEEECCCceEEEEeeeecC
Q 000346 256 PMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 256 PdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
.|.++|++||.|.+++||++++...
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeee
Confidence 9999999999999999999996554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=256.87 Aligned_cols=256 Identities=21% Similarity=0.259 Sum_probs=228.3
Q ss_pred ceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEEC
Q 000346 5 TVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILE 82 (1630)
Q Consensus 5 t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~ 82 (1630)
..-++..+..|+.. .|+.+-|||+-.+++++++ .+|++||+.++++...+++| ..|.+++|+.. |.++++++.
T Consensus 96 pRp~l~~~l~g~r~----~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSs 170 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRS----SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS-GKYLATCSS 170 (406)
T ss_pred CCCCchhhhhcccc----ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-ccEEEecCC
Confidence 33344444444444 7999999999999999988 77999999999999999966 88999999999 999999999
Q ss_pred CCeEEEEECCCC-cE------------EEEEcCCCCe-EEeecCCeEEEEE----------------------cCCCCEE
Q 000346 83 DCTIRSCDFDTE-QS------------FVLHSPEKKM-ESISVDTEVHLAL----------------------TPLQPVV 126 (1630)
Q Consensus 83 DGtIrVWDl~tg-e~------------~v~fspdg~~-asgs~Dgtv~L~~----------------------spdg~~L 126 (1630)
|-.+++||.++. +| ++.|-|.|.. ++++.|.++..|. +.||.++
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence 999999998762 11 8888999988 8999998866553 5688899
Q ss_pred EEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCCcEE
Q 000346 127 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR---------------LPVLYVAYADGLIRAYNIHTYAVH 191 (1630)
Q Consensus 127 aSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd---------------g~lLaSgS~DGtIrIWDl~t~~~i 191 (1630)
++++.|. +|++|-+.++ .|...+.+|..+|-+++|-|. +.++.+++.|++|++||+.++.++
T Consensus 251 As~s~dq-tl~vW~~~t~--~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 251 ASCSNDQ-TLRVWVVATK--QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred EecCCCc-eEEEEEeccc--hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 9999999 9999999988 899999999999999999763 248999999999999999999999
Q ss_pred EEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 192 YTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 192 ~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
.++.+ +++|. .++|+|.|+||+++.+|+++++||+++.+| ..++..|..-|+++.|+.+-.+++||+-|.++
T Consensus 328 ~tL~ghdnwVr-----~~af~p~Gkyi~ScaDDktlrvwdl~~~~c--mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 328 FTLVGHDNWVR-----GVAFSPGGKYILSCADDKTLRVWDLKNLQC--MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred EEEecccceee-----eeEEcCCCeEEEEEecCCcEEEEEecccee--eeccCCCcceeEEEecCCCCceEEecccccee
Confidence 99998 99999 999999999999999999999999999996 88899999999999999999999999999999
Q ss_pred EEEEe
Q 000346 271 QVWKT 275 (1630)
Q Consensus 271 rIWDl 275 (1630)
++|..
T Consensus 401 KvwEc 405 (406)
T KOG0295|consen 401 KVWEC 405 (406)
T ss_pred eeeec
Confidence 99974
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=239.75 Aligned_cols=256 Identities=16% Similarity=0.158 Sum_probs=215.5
Q ss_pred ccceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEECCeEEEEECCCCc--EEEEEcCC-CCEEEEEEeCCCCCEEEE
Q 000346 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGS--RIASIDIN-SPVVRMAYSPTSGHAVVA 79 (1630)
Q Consensus 3 W~t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~--~i~tl~~~-~~VtsVafSpd~g~lLaS 79 (1630)
|........+.+.|.++ +|+.+...|+++.||+++..+|++||++++. .+.++++| ..|+++.|..+ |+++++
T Consensus 25 Wqa~tG~C~rTiqh~ds---qVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d-grWMyT 100 (311)
T KOG0315|consen 25 WQALTGICSRTIQHPDS---QVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD-GRWMYT 100 (311)
T ss_pred eehhcCeEEEEEecCcc---ceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeec-CeEEEe
Confidence 66777777778877774 9999999999999999999999999999775 58889966 99999999999 999999
Q ss_pred EECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee-cCCCCC
Q 000346 80 ILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-TDLKKP 158 (1630)
Q Consensus 80 gS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-~gH~~~ 158 (1630)
||+||+++|||++...+.-.|... ...-.+..+|++..|++|..++ .|++||+.+. .|...+ ......
T Consensus 101 gseDgt~kIWdlR~~~~qR~~~~~--------spVn~vvlhpnQteLis~dqsg-~irvWDl~~~--~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQRNYQHN--------SPVNTVVLHPNQTELISGDQSG-NIRVWDLGEN--SCTHELIPEDDTS 169 (311)
T ss_pred cCCCceEEEEeccCcccchhccCC--------CCcceEEecCCcceEEeecCCC-cEEEEEccCC--ccccccCCCCCcc
Confidence 999999999999875553333211 2335678899999999999999 9999999887 455444 344678
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc------EEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEEC
Q 000346 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYA------VHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1630)
Q Consensus 159 ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~------~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl 231 (1630)
|.++...|||.+++.+...|...+|++-+.. ++..++. ...+. .+.+|||+++|++++.|.+++||+.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il-----~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL-----RCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE-----EEEECCCCcEEEeecCCceEEEEec
Confidence 9999999999999999999999999987653 3333443 55666 8999999999999999999999999
Q ss_pred CCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 232 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 232 ~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
.+. ......+.+|..+++.++||.||+||+|++.|+.+++|++....
T Consensus 245 ~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 245 DDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred CCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 987 22467789999999999999999999999999999999987433
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=260.10 Aligned_cols=239 Identities=19% Similarity=0.284 Sum_probs=215.9
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECC-CeEEEEECCCCcEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILED-CTIRSCDFDTEQSFV 98 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~D-GtIrVWDl~tge~~v 98 (1630)
.+|+|.+||+....|++|-. |...+|.+..-.+++.+... .+|..++|+.. |.||+.|+.. |.+-||++.+....+
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEeccc-CCEEEEcCCccceEEEEEeeccceee
Confidence 48999999999999999998 77889999999999999954 99999999999 9999999865 899999998765433
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
.-. ++.+...++..+|||+.+++|++|+ .|++||..++ .|+.++..|+..|+.+.|+.+++.++++|.||
T Consensus 345 KQQ-------gH~~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 345 KQQ-------GHSDRITSLAYSPDGQLIATGAEDG-KVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred ecc-------ccccceeeEEECCCCcEEEeccCCC-cEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 332 5566778899999999999999999 9999999999 89999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCC-eEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG-TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DG-tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
+||.||+..++..+++....++. ..+++..|.|..+++|+.|. .|.||++++|+ ++..+.||.++|.+++|+|+
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~Q---fscvavD~sGelV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPIQ---FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred eEEeeeecccceeeeecCCCcee---eeEEEEcCCCCEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEccc
Confidence 99999999999999999844443 23889999999999998776 69999999999 48999999999999999999
Q ss_pred CCEEEEEECCCceEEEEee
Q 000346 258 LRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl~ 276 (1630)
+..|+|+|.|.+||+||+-
T Consensus 490 ~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred cCeEEeccccceEEEEEee
Confidence 9999999999999999985
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=241.71 Aligned_cols=243 Identities=15% Similarity=0.199 Sum_probs=207.3
Q ss_pred eeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEE
Q 000346 12 RHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSC 89 (1630)
Q Consensus 12 qhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVW 89 (1630)
+..||++ .|..++.++||++.++++. +.+++||+.+++..+.|.+| ..|.+++|++| ...|++|+.|.+|++|
T Consensus 58 ~~~GHsH----~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 58 RLTGHSH----FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLW 132 (315)
T ss_pred eeeccce----EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC-CceeecCCCcceeeee
Confidence 3456677 8999999999999999999 77999999999999999977 88999999999 9999999999999999
Q ss_pred ECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCC--CCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC
Q 000346 90 DFDTEQSFVLHSPEKKMESISVDTEVHLALTPL--QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR 167 (1630)
Q Consensus 90 Dl~tge~~v~fspdg~~asgs~Dgtv~L~~spd--g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd 167 (1630)
|... .|......++. .+=..++.|+|. .++|++++.|+ +|++||+.+. +....+.+|++.++.+++|||
T Consensus 133 nt~g-~ck~t~~~~~~-----~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 133 NTLG-VCKYTIHEDSH-----REWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eecc-cEEEEEecCCC-----cCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCc--chhhccccccccEEEEEECCC
Confidence 9754 34344443321 233356788888 68999999999 9999999988 788899999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec---
Q 000346 168 LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV--- 244 (1630)
Q Consensus 168 g~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g--- 244 (1630)
|.+.++|+.||.+.+||++.++.++++.+...|+ +++|+|+..+|+.+. +..|+|||+.++.+ +..+..
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~-----sl~fspnrywL~~at-~~sIkIwdl~~~~~--v~~l~~d~~ 275 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN-----SLCFSPNRYWLCAAT-ATSIKIWDLESKAV--VEELKLDGI 275 (315)
T ss_pred CCEEecCCCCceEEEEEccCCceeEeccCCCeEe-----eEEecCCceeEeecc-CCceEEEeccchhh--hhhcccccc
Confidence 9999999999999999999999999999999999 999999987777665 55699999998764 433321
Q ss_pred ------cCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 245 ------GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 245 ------H~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..-...+++|++||..|++|-.|+.|++|.+.
T Consensus 276 g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 12345678999999999999999999999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=260.33 Aligned_cols=246 Identities=16% Similarity=0.225 Sum_probs=216.1
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.|..|.|.|+|+.|++|+. |.+.+|+..+-.....++ |+.+|+++.|+++ +.++++|+.+|.|++|+..-...
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchhhhHHhh
Confidence 5788999999999999999 999999985433333344 5599999999999 99999999999999999764432
Q ss_pred --------EEEEcCCCCe-EEeecCCeEEEEE----------------------cCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 97 --------FVLHSPEKKM-ESISVDTEVHLAL----------------------TPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 97 --------~v~fspdg~~-asgs~Dgtv~L~~----------------------spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
+++|+|.... ++++.|+++.+|. ||....|++++.|. .|++||.+++
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg- 254 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSG- 254 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCc-
Confidence 8999997777 9999999987774 78888999999999 9999999999
Q ss_pred ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC-CCCEEEEEeCC
Q 000346 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGDRR 223 (1630)
Q Consensus 146 ~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS~D 223 (1630)
.|+.++.+|+..|+.+.|+|++++|+++|.|..++++|+++.+.++++.+ ...|+ +++|+| ...+|.+|+.|
T Consensus 255 -~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~-----~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 255 -SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT-----SLTWHPLNESLFTSGGSD 328 (464)
T ss_pred -chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe-----eeccccccccceeeccCC
Confidence 89999999999999999999999999999999999999998888888886 88898 999999 55678889999
Q ss_pred CeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 224 GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 224 GtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
|.|..|.+...++ +...-.+|...|++++|||=|.+|++|+.|.++++|.-...
T Consensus 329 gsvvh~~v~~~~p-~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 329 GSVVHWVVGLEEP-LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CceEEEecccccc-ccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 9999999985554 33345689999999999999999999999999999975533
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=251.22 Aligned_cols=255 Identities=17% Similarity=0.187 Sum_probs=216.8
Q ss_pred eeeeecc----CCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEEC
Q 000346 9 LDLRHVG----RGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILE 82 (1630)
Q Consensus 9 LelqhvG----rg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~ 82 (1630)
++++|.- .+......|++++|+.+|.+||+|+. |.+++|+.. |..+.++. |.++|.++.|+.+ |++|++++.
T Consensus 219 ~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~-G~yilS~~v 296 (524)
T KOG0273|consen 219 LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKK-GTYILSGGV 296 (524)
T ss_pred hhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCC-CCEEEeccC
Confidence 4555543 33334468999999999999999999 789999987 77777887 5599999999999 999999999
Q ss_pred CCeEEEEECCCCcE------------EEEEcCCCCeEEeecCCe----------------------EEEEEcCCCCEEEE
Q 000346 83 DCTIRSCDFDTEQS------------FVLHSPEKKMESISVDTE----------------------VHLALTPLQPVVFF 128 (1630)
Q Consensus 83 DGtIrVWDl~tge~------------~v~fspdg~~asgs~Dgt----------------------v~L~~spdg~~LaS 128 (1630)
|+++.+||..+++. .+.|..+..+++.+.|+. ..+-+.|.+.+|++
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 99999999988866 234443333344444443 45557888999999
Q ss_pred EecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCC---------EEEEEeCCCeEEEEEcCCCcEEEEEe-cCC
Q 000346 129 GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP---------VLYVAYADGLIRAYNIHTYAVHYTLQ-LDN 198 (1630)
Q Consensus 129 gs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~---------lLaSgS~DGtIrIWDl~t~~~i~tL~-~~~ 198 (1630)
+++|+ ++++|..... .+...+..|+..|..+.|+|.|. .+++++.|++|++||+..+.++++|. |..
T Consensus 377 ~SdD~-TlkiWs~~~~--~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~ 453 (524)
T KOG0273|consen 377 CSDDG-TLKIWSMGQS--NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE 453 (524)
T ss_pred ecCCC-eeEeeecCCC--cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC
Confidence 99999 9999998777 78899999999999999999653 78999999999999999999999995 588
Q ss_pred ceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 199 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 199 ~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+|. +++|+|+|+|+++|+.||.|.+|+.++++. ++.+.+ .+.|..++|+.+|.+|..+-.||.+++-|++
T Consensus 454 pVy-----svafS~~g~ylAsGs~dg~V~iws~~~~~l--~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 454 PVY-----SVAFSPNGRYLASGSLDGCVHIWSTKTGKL--VKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ceE-----EEEecCCCcEEEecCCCCeeEeccccchhe--eEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 998 999999999999999999999999999983 777765 6679999999999999999999999999875
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=265.26 Aligned_cols=266 Identities=21% Similarity=0.238 Sum_probs=223.3
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc--EEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCC-cEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS--RIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE-QSF 97 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~--~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tg-e~~ 97 (1630)
.|.|+.|+++|.++++++. +.+++|+..+.+ ....+.+| ..|++++|+|+ +.++++++.|++|++||+... .+.
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEE
Confidence 7899999999999999988 669999998777 66666644 89999999999 999999999999999999433 444
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
..+. ++......+.++++++.+++|+.|+ +|++||+.++ ++...+.+|...|++++|++++.+|++++.|
T Consensus 240 ~~l~-------gH~~~v~~~~f~p~g~~i~Sgs~D~-tvriWd~~~~--~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 240 KTLK-------GHSTYVTSVAFSPDGNLLVSGSDDG-TVRIWDVRTG--ECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred EEec-------CCCCceEEEEecCCCCEEEEecCCC-cEEEEeccCC--eEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 4444 5566778899999999999999999 9999999997 9999999999999999999999999999999
Q ss_pred CeEEEEEcCCCc--EEEEEec-CC--ceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCC---e
Q 000346 178 GLIRAYNIHTYA--VHYTLQL-DN--TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP---I 249 (1630)
Q Consensus 178 GtIrIWDl~t~~--~i~tL~~-~~--~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~---V 249 (1630)
+.|++||+.++. +..++.. .. .++ ++.|+|++.++++++.|+.+++||+..+.+ +..+.+|... +
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVT-----SVQFSPNGKYLLSASLDRTLKLWDLRSGKS--VGTYTGHSNLVRCI 382 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCcee-----EEEECCCCcEEEEecCCCeEEEEEccCCcc--eeeecccCCcceeE
Confidence 999999999999 5677765 33 477 999999999999999999999999999885 7888888875 3
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCC
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLN 329 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~N 329 (1630)
.+...++.+.++++|+.|+.|++||+...... ....+ .....+..+.+||..|
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~------------------------~~l~~---h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL------------------------QRLEG---HSKAAVSDLSSHPTEN 435 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCccchh------------------------hhhcC---CCCCceeccccCCCcC
Confidence 44455779999999999999999998742220 00010 1134556789999999
Q ss_pred ceeE
Q 000346 330 LAVL 333 (1630)
Q Consensus 330 l~Al 333 (1630)
+.+.
T Consensus 436 ~~~s 439 (456)
T KOG0266|consen 436 LIAS 439 (456)
T ss_pred eeee
Confidence 8873
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=231.84 Aligned_cols=241 Identities=25% Similarity=0.350 Sum_probs=208.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.|.+++|+|++++|++++. +.|++|++.+++....+..+ ..+..+.|+++ ++.+++++.|+.|++||+.+++.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 8999999999999999997 88999999999888888755 88899999999 88999999999999999987432
Q ss_pred --------EEEEcCCCCe-EEeecCCeEEE----------------------EEcCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 97 --------FVLHSPEKKM-ESISVDTEVHL----------------------ALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 97 --------~v~fspdg~~-asgs~Dgtv~L----------------------~~spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
++.|++++.. ++++.++.+.+ .+++++.++++++.++ .|++||+.++
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~- 167 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTG- 167 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEcccc-
Confidence 6778887666 54543555433 3456667777777788 9999999877
Q ss_pred ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCC
Q 000346 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1630)
Q Consensus 146 ~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DG 224 (1630)
.....+..|...+.++.|+|+++.+++++.|+.|++||+++++....+.. ...+. ++.|+|++.++++++.|+
T Consensus 168 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 168 -KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN-----SVAFSPDGYLLASGSEDG 241 (289)
T ss_pred -ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceE-----EEEEcCCCcEEEEEcCCC
Confidence 67777888888999999999999999999999999999999888888854 66888 999999988888888899
Q ss_pred eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 225 TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 225 tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
.|++||+.+++. ...+..|...|.++.|++++++|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCcee--EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999998774 777889999999999999999999999999999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=242.76 Aligned_cols=238 Identities=16% Similarity=0.215 Sum_probs=216.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
-|+|+++.|...|+++|+. ++|+|||+.+|+...++.+| ..|+.+++|+. ..++.++++|+.|+.||++.++..-.+
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkvIR~Y 231 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKVIRHY 231 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEechhhhhHHHh
Confidence 7999999999999999999 66999999999999999977 99999999999 999999999999999999887764444
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
+ |+..+..++..+|.-..|++|+.|. ++++||+++. ..+..+.+|..+|.++.+.|-...+++||.|++|
T Consensus 232 h-------GHlS~V~~L~lhPTldvl~t~grDs-t~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 232 H-------GHLSGVYCLDLHPTLDVLVTGGRDS-TIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred c-------cccceeEEEeccccceeEEecCCcc-eEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 4 5666778899999999999999999 9999999998 8899999999999999999988899999999999
Q ss_pred EEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC
Q 000346 181 RAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 259 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~ 259 (1630)
++||++.++...++.+ ...|. +++.+|....+++++.| .|+-|++..+.. +..+.+|...|++++...||
T Consensus 302 rlWDl~agkt~~tlt~hkksvr-----al~lhP~e~~fASas~d-nik~w~~p~g~f--~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVR-----ALCLHPKENLFASASPD-NIKQWKLPEGEF--LQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred EEeeeccCceeEeeecccceee-----EEecCCchhhhhccCCc-cceeccCCccch--hhccccccceeeeeeeccCc-
Confidence 9999999999999987 88898 99999998888888865 589999999884 77799999999999998875
Q ss_pred EEEEEECCCceEEEEeeeecC
Q 000346 260 LLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 260 lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
++++|++.|.+.+||.+...+
T Consensus 373 v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred eEEEcCCceEEEEEecCcCcc
Confidence 788999999999999986554
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=250.06 Aligned_cols=206 Identities=18% Similarity=0.219 Sum_probs=189.5
Q ss_pred CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCC-Ce--EEeecCCeEEE--------
Q 000346 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEK-KM--ESISVDTEVHL-------- 117 (1630)
Q Consensus 61 ~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg-~~--asgs~Dgtv~L-------- 117 (1630)
..+|..+.|+.+ +..|||||.+|.++||+..+... ++.|+|.. .. ++++.|+++++
T Consensus 175 ~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 175 TRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 389999999999 99999999999999999887654 78899983 33 89999998554
Q ss_pred --------------EEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000346 118 --------------ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAY 183 (1630)
Q Consensus 118 --------------~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIW 183 (1630)
.|+|+|.+|.+++.|. +-++||+.++ .......||...|.+++|+|||.++++|+.|..-+||
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk--~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDS-TWRLWDLETK--SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeeccccc-chhhcccccc--hhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 4799999999999999 9999999998 6777789999999999999999999999999999999
Q ss_pred EcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC-CCCEE
Q 000346 184 NIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLL 261 (1630)
Q Consensus 184 Dl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP-dG~lL 261 (1630)
|+++++++..+.+ .+.|. +|+|+|+|-.|+||+.|++++|||++..++ +.++.+|.+-|+.|.|+| .|.+|
T Consensus 331 DlRtgr~im~L~gH~k~I~-----~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEIL-----SVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred ecccCcEEEEeccccccee-----eEeECCCceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEE
Confidence 9999999999997 88898 999999999999999999999999998775 889999999999999999 78899
Q ss_pred EEEECCCceEEEEeee
Q 000346 262 VTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 262 aSgS~DGtIrIWDl~~ 277 (1630)
+|+|.|++++||....
T Consensus 404 ~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRT 419 (459)
T ss_pred EEcccCcceeeecCCC
Confidence 9999999999998653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=230.02 Aligned_cols=237 Identities=14% Similarity=0.177 Sum_probs=202.4
Q ss_pred CCCcEEEEEcCCCC-EEEEEECCe-EEEEECC-----CCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 21 PLQPHEAAFHPNQA-LIAVAIGTY-IIEFDTL-----TGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 21 p~rV~~LaFSPdG~-lLasgs~Gt-I~VWDl~-----tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
+..|+.++..+.++ .+++++.+. +.+|++. .|..++.+++| ..|..+..+++ |++.++++.|+++|+||+.
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEec
Confidence 34899999998754 666666655 9999875 56778899976 88999999999 9999999999999999999
Q ss_pred CCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecC--CCCCeEEEEEcCC--C
Q 000346 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD--LKKPIVNLACHPR--L 168 (1630)
Q Consensus 93 tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g--H~~~ItsLafSPd--g 168 (1630)
+++....|. ++......+.++++...+++|+.|. +|++|++... |..+... |..+|.|+.|+|+ .
T Consensus 94 ~g~~t~~f~-------GH~~dVlsva~s~dn~qivSGSrDk-Tiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 94 TGESTRRFV-------GHTKDVLSVAFSTDNRQIVSGSRDK-TIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred CCcEEEEEE-------ecCCceEEEEecCCCceeecCCCcc-eeeeeeeccc---EEEEEecCCCcCcEEEEEEcCCCCC
Confidence 987766665 5666778899999999999999999 9999998765 3444433 3789999999997 6
Q ss_pred CEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCC
Q 000346 169 PVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 169 ~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.+|++++.|++|++||+++.+...++.+ .+.++ .+++||||..+++|+.||.+.+||++.+++ +.++ +|..
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~-----t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl-~a~~ 234 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN-----TVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSL-EAFD 234 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEE-----EEEECCCCCEEecCCCCceEEEEEccCCce--eEec-cCCC
Confidence 7999999999999999999999998887 88888 999999999999999999999999999986 6666 5789
Q ss_pred CeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 248 PITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 248 ~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
.|.+++|+|+...|+. ..+..|+|||+...
T Consensus 235 ~v~sl~fspnrywL~~-at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCA-ATATSIKIWDLESK 264 (315)
T ss_pred eEeeEEecCCceeEee-ccCCceEEEeccch
Confidence 9999999999666655 44667999998743
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=262.00 Aligned_cols=232 Identities=19% Similarity=0.233 Sum_probs=198.4
Q ss_pred eccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 13 HVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 13 hvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
-.||++ .|.+..|+|+.++|++++. .+|++|.+.+..++-.+.+| .||+++.|+|. |-++||+|.|++-++|.
T Consensus 447 L~GH~G----PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 447 LYGHSG----PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWS 521 (707)
T ss_pred eecCCC----ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeee
Confidence 467777 8999999999999999999 67999999999999999977 99999999999 99999999999999999
Q ss_pred CCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCE
Q 000346 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 91 l~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~l 170 (1630)
.+..... +...++....-++.+||+..++++|+.|. +|++||..+| ..++++.||.++|.+++|+|+|++
T Consensus 522 ~d~~~Pl-------RifaghlsDV~cv~FHPNs~Y~aTGSsD~-tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 522 TDHNKPL-------RIFAGHLSDVDCVSFHPNSNYVATGSSDR-TVRLWDVSTG--NSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred cccCCch-------hhhcccccccceEEECCcccccccCCCCc-eEEEEEcCCC--cEEEEecCCCCceEEEEEcCCCce
Confidence 7654321 11334444556789999999999999999 9999999999 789999999999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCce------------
Q 000346 171 LYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS------------ 237 (1630)
Q Consensus 171 LaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~------------ 237 (1630)
|++|+.||.|++||+.+++.+..+.+ .+.|. ++.|+.||..|++|+.|++|++||+..-...
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~-----SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~ 666 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIY-----SLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSA 666 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCcee-----EEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccccc
Confidence 99999999999999999999888876 88888 9999999999999999999999998753221
Q ss_pred ----------eEEEeeccCCCeEEEEEeCCCCEEEEE
Q 000346 238 ----------MIGIIQVGSQPITSVAWLPMLRLLVTL 264 (1630)
Q Consensus 238 ----------lv~tL~gH~~~VssVsfSPdG~lLaSg 264 (1630)
++.++.....+|.++.|....-.|+.|
T Consensus 667 ~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 667 ITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 344555555677777777655444443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-20 Score=218.57 Aligned_cols=249 Identities=16% Similarity=0.156 Sum_probs=205.2
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEE--Ec-CCCCEEEEEEeCCCCCEEEEEECC----CeEEEEECCCC
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIAS--ID-INSPVVRMAYSPTSGHAVVAILED----CTIRSCDFDTE 94 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~t--l~-~~~~VtsVafSpd~g~lLaSgS~D----GtIrVWDl~tg 94 (1630)
+++-..|||.|-|+|+|.. |+|+|||....+.+.. ++ ..++|.+++|+.+ ++.|++.++. |.+.+||.-+.
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d-s~RI~avGEGrerfg~~F~~DSG~S 139 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD-SKRIAAVGEGRERFGHVFLWDSGNS 139 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC-CcEEEEEecCccceeEEEEecCCCc
Confidence 8899999999999999998 9999999986554433 33 3499999999999 8888777643 45777775332
Q ss_pred --cE--------EEEEcCCCCe--EEeecCCe----------------------EEEEEcCCCCEEEEEecCCcEEEEEE
Q 000346 95 --QS--------FVLHSPEKKM--ESISVDTE----------------------VHLALTPLQPVVFFGFHRRMSVTVVG 140 (1630)
Q Consensus 95 --e~--------~v~fspdg~~--asgs~Dgt----------------------v~L~~spdg~~LaSgs~Dg~tI~IwD 140 (1630)
+. .+.|.|...+ ++++.|.. .++-++|+|..+++.+.|+ +|.+||
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg-ki~iyD 218 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG-KIYIYD 218 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc-cEEEEc
Confidence 21 6677777776 78888876 4456799999999999999 999999
Q ss_pred cccCCccceeeec---CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEE
Q 000346 141 TVEGGRAPTKIKT---DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWL 217 (1630)
Q Consensus 141 l~sg~~~~i~il~---gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~L 217 (1630)
-.++ ..+..+. +|++.|.+++|+||+..+++++.|.+++|||+.+.++++++.....+. ..-..+-|. ...|
T Consensus 219 Gktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~-dqqvG~lWq--kd~l 293 (603)
T KOG0318|consen 219 GKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE-DQQVGCLWQ--KDHL 293 (603)
T ss_pred CCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh-ceEEEEEEe--CCeE
Confidence 9988 6666665 899999999999999999999999999999999999999998522221 000145565 5678
Q ss_pred EEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 218 FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 218 aSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
++-+.+|+|.+++...... ...+.+|...|+++..++++.+|.+||.||.|.-|+.....+
T Consensus 294 ItVSl~G~in~ln~~d~~~--~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSV--LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred EEEEcCcEEEEecccCCCh--hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 9999999999999998874 888999999999999999999999999999999999876554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=229.59 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=204.7
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECC-CCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTL-TGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~-tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
.|.++.|+|+|.+|++|+.++ |.+|++. ..+-...+++| +.|..+.|.++ ++.|++++.|.+|+.||.++|++
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-CCEEEEecCCceEEEEecccceeeeh
Confidence 799999999999999999966 9999965 44556667766 99999999999 99999999999999999999987
Q ss_pred ---------EEEEcCCCCe--EEeecCCeEEEEEcC---------------------CCCEEEEEecCCcEEEEEEcccC
Q 000346 97 ---------FVLHSPEKKM--ESISVDTEVHLALTP---------------------LQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 97 ---------~v~fspdg~~--asgs~Dgtv~L~~sp---------------------dg~~LaSgs~Dg~tI~IwDl~sg 144 (1630)
.+.-+.-|.. .+++.|+++++|... ++..+++|+-|+ .|++||++..
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn-~ikvWd~r~~ 206 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN-DIKVWDLRKN 206 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC-ceeeeccccC
Confidence 1111222333 678888888777643 445677888898 9999999988
Q ss_pred CccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----cEEEEEec-----CCceeecCcccEEEcCCCC
Q 000346 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY----AVHYTLQL-----DNTIKLLGAGAFAFHPTLE 215 (1630)
Q Consensus 145 ~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~----~~i~tL~~-----~~~V~IsGi~sVafSPDg~ 215 (1630)
.+..++.+|...|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+ +...- .++|+|+++
T Consensus 207 --d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL-----~cswsp~~~ 279 (338)
T KOG0265|consen 207 --DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL-----KCSWSPNGT 279 (338)
T ss_pred --cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc-----eeeccCCCC
Confidence 899999999999999999999999999999999999999843 55666764 22233 789999999
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEE
Q 000346 216 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 216 ~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIW 273 (1630)
.+-+|+.|+.+++||..... ++..+.||...|.++.|||...+|.+++.|++|++=
T Consensus 280 ~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ccccccccceEEEeeccccc--EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999999999998777 488999999999999999999999999999999763
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-23 Score=226.44 Aligned_cols=211 Identities=16% Similarity=0.174 Sum_probs=187.9
Q ss_pred EEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCe-EEeecCCeEEEEE-
Q 000346 55 IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTEVHLAL- 119 (1630)
Q Consensus 55 i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~-asgs~Dgtv~L~~- 119 (1630)
.+++++| +.|.++.|++| +++|+++|.||.+.|||.-|... ..+|+|.+.. ++++.|..+.++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 3778877 99999999999 99999999999999999877654 6789999999 8888777644432
Q ss_pred --------------------------cCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEE
Q 000346 120 --------------------------TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLY 172 (1630)
Q Consensus 120 --------------------------spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLa 172 (1630)
..+...|++++.|. +.-+||++++ +.+..+.+|.+.|++++++| +++.++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~-TCalWDie~g--~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDM-TCALWDIETG--QQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCc-eEEEEEcccc--eEEEEecCCcccEEEEecCCCCCCeEE
Confidence 22356788999999 9999999999 89999999999999999999 999999
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEee--ccCCCe
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ--VGSQPI 249 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~--gH~~~V 249 (1630)
+|+.|++.++||++.+.++++|.+ +..|+ ++.|+|+|.-+++|++|++.++||++..+. +..+. .-...|
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDIN-----sv~ffP~G~afatGSDD~tcRlyDlRaD~~--~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDIN-----SVRFFPSGDAFATGSDDATCRLYDLRADQE--LAVYSHDSIICGI 276 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccc-----eEEEccCCCeeeecCCCceeEEEeecCCcE--EeeeccCcccCCc
Confidence 999999999999999999999998 99999 999999999999999999999999998875 44443 233789
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++++||-.|++|.+|..|.++.+||.-
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecc
Confidence 999999999999999999999999975
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=262.31 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=203.4
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCC----c----EEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEEC
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTG----S----RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg----~----~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl 91 (1630)
...|.+++|+|+|++|++|+. +.|+|||..+. . ....+.++..|.+++|++..+.+|++++.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 347999999999999999998 77999997532 1 23334456889999999865789999999999999999
Q ss_pred CCCcE------------EEEEcC-CCCe-EEeecCCeEEEEEc----------------------CCCCEEEEEecCCcE
Q 000346 92 DTEQS------------FVLHSP-EKKM-ESISVDTEVHLALT----------------------PLQPVVFFGFHRRMS 135 (1630)
Q Consensus 92 ~tge~------------~v~fsp-dg~~-asgs~Dgtv~L~~s----------------------pdg~~LaSgs~Dg~t 135 (1630)
.+++. ++.|+| ++.. ++++.|+.+.+|.. +++..+++|+.|+ .
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg-~ 641 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADH-K 641 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCC-e
Confidence 87754 778886 5666 89999998887752 3567899999999 9
Q ss_pred EEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------cEEEEEec-CCceeecCcccE
Q 000346 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY------AVHYTLQL-DNTIKLLGAGAF 208 (1630)
Q Consensus 136 I~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~------~~i~tL~~-~~~V~IsGi~sV 208 (1630)
|++||+.+.. .+...+.+|...|.++.|. ++.+|++++.|++|++||++.. .++.++.+ ...++ ++
T Consensus 642 I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~-----~v 714 (793)
T PLN00181 642 VYYYDLRNPK-LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN-----FV 714 (793)
T ss_pred EEEEECCCCC-ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee-----EE
Confidence 9999998763 4667788999999999997 6789999999999999999743 56677776 67777 89
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCceeEE-----------EeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEe
Q 000346 209 AFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG-----------IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 209 afSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~-----------tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
+|+|++.+|++|+.|+.|++|+.....+.... ....|...|.+++|+|++..|++|+.||.|+||++
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999999999998755431111 12335567999999999999999999999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=252.73 Aligned_cols=242 Identities=17% Similarity=0.235 Sum_probs=210.5
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEEC-CCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDT-LTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl-~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
...|.+++|+|++.++++++. .+|+|||+ ..+..++++.+| ..|++++|+|+ ++++++|+.|++|++||++++++.
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEE
Confidence 348999999999999999999 66999999 566889999966 99999999999 799999999999999999998775
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCC--eEEEEEcCCCCEEEEEe
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP--IVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~--ItsLafSPdg~lLaSgS 175 (1630)
-.+. ++.++...+++.+++..+++++.|+ .|++||+.++...+...+.++... ++++.|+|++.++++++
T Consensus 282 ~~l~-------~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 282 RKLK-------GHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred Eeee-------ccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 5555 5677888899999999999999999 999999999831156777777655 99999999999999999
Q ss_pred CCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeecc-CCCeEEEE
Q 000346 176 ADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG-SQPITSVA 253 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH-~~~VssVs 253 (1630)
.|+++++||++.+.+...+.+ ...+. .+.+..+++.+.++++|+.|+.|++||+.++.. +..+.+| ...+..+.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--~~~l~~h~~~~~~~~~ 429 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVR--CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--LQRLEGHSKAAVSDLS 429 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcce--eEecccccCCCCeEEEEeCCceEEEEeCCccch--hhhhcCCCCCceeccc
Confidence 999999999999999888886 33221 011556688999999999999999999998774 7789999 89999999
Q ss_pred EeCCCCEEEEEE--CCCceEEEEe
Q 000346 254 WLPMLRLLVTLC--RDGSLQVWKT 275 (1630)
Q Consensus 254 fSPdG~lLaSgS--~DGtIrIWDl 275 (1630)
|+|...++++++ .|+.+++|..
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecC
Confidence 999999999998 7889999975
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=237.95 Aligned_cols=246 Identities=20% Similarity=0.204 Sum_probs=209.1
Q ss_pred CcEEEEEcCCCC-EEEEEEC-CeEEEEECCC--CcEE--EEE-----------cCCCCEEEEEEeCCCCCEEEEEECCCe
Q 000346 23 QPHEAAFHPNQA-LIAVAIG-TYIIEFDTLT--GSRI--ASI-----------DINSPVVRMAYSPTSGHAVVAILEDCT 85 (1630)
Q Consensus 23 rV~~LaFSPdG~-lLasgs~-GtI~VWDl~t--g~~i--~tl-----------~~~~~VtsVafSpd~g~lLaSgS~DGt 85 (1630)
.|.+.+|+|-.. .+++|+. -+.++|++.. .... ..+ .....|++++|+.+ |..||+|+.||.
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~~~G~ 258 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGSEDGE 258 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEeecCcE
Confidence 689999999777 7777777 5599999874 1111 111 12257999999999 999999999999
Q ss_pred EEEEECCCCcE-----------EEEEcCCCCe-EEeecCCeEEEEEcCC---------------------CCEEEEEecC
Q 000346 86 IRSCDFDTEQS-----------FVLHSPEKKM-ESISVDTEVHLALTPL---------------------QPVVFFGFHR 132 (1630)
Q Consensus 86 IrVWDl~tge~-----------~v~fspdg~~-asgs~Dgtv~L~~spd---------------------g~~LaSgs~D 132 (1630)
+++|+...+.. .+.|+..|.+ ++++.|+++.+|.... ...+++++.|
T Consensus 259 ~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td 338 (524)
T KOG0273|consen 259 ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTD 338 (524)
T ss_pred EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCC
Confidence 99999765432 8889999999 9999999988876422 2457788889
Q ss_pred CcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEc
Q 000346 133 RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFH 211 (1630)
Q Consensus 133 g~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafS 211 (1630)
+ .|+++.+... .++.++.+|.+.|.++.|+|.+.+|+++|.|++++||+.....+...+.. ...|. .+.|+
T Consensus 339 ~-~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~-----t~~ws 410 (524)
T KOG0273|consen 339 G-CIHVCKVGED--RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY-----TIKWS 410 (524)
T ss_pred c-eEEEEEecCC--CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcccee-----eEeec
Confidence 9 9999998877 89999999999999999999999999999999999999988888888876 77776 88888
Q ss_pred CCC---------CEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 212 PTL---------EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 212 PDg---------~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
|+| ..+++++.|++|++||+..+.+ +.+|..|..+|.+++|+|+|+++++|+.||.|.+|++.+..
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 865 3689999999999999999996 88899999999999999999999999999999999987543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=235.87 Aligned_cols=255 Identities=16% Similarity=0.196 Sum_probs=214.4
Q ss_pred CccceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEE
Q 000346 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVA 79 (1630)
Q Consensus 2 eW~t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaS 79 (1630)
.|..-.|+..+-..++. ....|.|+.+. ...+++|.. .+|+|||.++-.+...+.+| +.|.|+.|. ...|++
T Consensus 179 NWr~Gr~~~~rinc~Se-~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviis 252 (499)
T KOG0281|consen 179 NWRCGRHLLQRINCRSE-NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVS 252 (499)
T ss_pred chhccceeeeeecCCcc-cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEe
Confidence 36666666555554554 34478999884 567899998 66999999999999999966 999999996 459999
Q ss_pred EECCCeEEEEECCCCcE------------EEEEcCCCCeEEeecCCeEEEEEc-----------------------CCCC
Q 000346 80 ILEDCTIRSCDFDTEQS------------FVLHSPEKKMESISVDTEVHLALT-----------------------PLQP 124 (1630)
Q Consensus 80 gS~DGtIrVWDl~tge~------------~v~fspdg~~asgs~Dgtv~L~~s-----------------------pdg~ 124 (1630)
|+.|.+|++||++++++ .+.|+ +|-+++++.|.++.+|.. -+..
T Consensus 253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k 331 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 331 (499)
T ss_pred cCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc
Confidence 99999999999999987 33343 333388899999888862 2456
Q ss_pred EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeec
Q 000346 125 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLL 203 (1630)
Q Consensus 125 ~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~Is 203 (1630)
++++++.|+ +|++|++.++ .+++++.+|...|.|+.+ .++++++||.|.+|++||+..|.+++.+++ +.-|.
T Consensus 332 yIVsASgDR-TikvW~~st~--efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR-- 404 (499)
T KOG0281|consen 332 YIVSASGDR-TIKVWSTSTC--EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-- 404 (499)
T ss_pred eEEEecCCc-eEEEEeccce--eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh--
Confidence 899999999 9999999999 899999999999999988 588999999999999999999999999998 88888
Q ss_pred CcccEEEcCCCCEEEEEeCCCeEEEEECCCCCce-------eEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 204 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS-------MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 204 Gi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~-------lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++.|. .+.+++|..||+|+|||+..+... ++.++..|++.|..+.|.. ..|++++.|.+|.|||+.
T Consensus 405 ---ciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 405 ---CIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFL 477 (499)
T ss_pred ---heeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcC
Confidence 99996 567999999999999999876321 4667778999999999954 578999999999999986
Q ss_pred e
Q 000346 277 V 277 (1630)
Q Consensus 277 ~ 277 (1630)
.
T Consensus 478 ~ 478 (499)
T KOG0281|consen 478 N 478 (499)
T ss_pred C
Confidence 3
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=247.59 Aligned_cols=240 Identities=15% Similarity=0.233 Sum_probs=204.3
Q ss_pred CCCcEEEEEcC-CCCEEEEEEC-CeEEEEECCC-CcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 21 PLQPHEAAFHP-NQALIAVAIG-TYIIEFDTLT-GSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 21 p~rV~~LaFSP-dG~lLasgs~-GtI~VWDl~t-g~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
...|.++.|.| .+.+|++++- +.|+||++-. +++++++.+| .+|++++|+.+ |..++++|.|+.|++||++||++
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc-CCeeeeeecceeeeeeccccceE
Confidence 33899999999 8888899888 5699999876 8999999977 99999999999 99999999999999999999999
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS 175 (1630)
...|+.+.. ..++-++|++ +.+++|..|+ .|+.||++++ ..++.+..|-+.|..+.|-++|+.+++++
T Consensus 293 ~~~f~~~~~--------~~cvkf~pd~~n~fl~G~sd~-ki~~wDiRs~--kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 293 LSRFHLDKV--------PTCVKFHPDNQNIFLVGGSDK-KIRQWDIRSG--KVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred EEEEecCCC--------ceeeecCCCCCcEEEEecCCC-cEEEEeccch--HHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 888774322 2456788888 7888999999 9999999999 88889999999999999999999999999
Q ss_pred CCCeEEEEEcCCCcEEEEEe------------c-----------CCceee--------------------cC-cccEEEc
Q 000346 176 ADGLIRAYNIHTYAVHYTLQ------------L-----------DNTIKL--------------------LG-AGAFAFH 211 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~------------~-----------~~~V~I--------------------sG-i~sVafS 211 (1630)
+|++++||+.+....+.... + ++.+-+ .| .+.+.||
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 99999999988543221110 0 111111 22 4679999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEE
Q 000346 212 PTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 212 PDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWD 274 (1630)
|||.+|++|+.||.+.+||.++.+ ++..+..|...+..+.|||. ...+|||+.||.|++|+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhh--hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999887 48889999999999999995 45799999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=245.72 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=131.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEEC
Q 000346 153 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1630)
Q Consensus 153 ~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl 231 (1630)
..|...|++++++|+.+++|+||.|.+.+||++.......++.+ ...|+ ++.|+|..+.++|+|.|++|+||.+
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw-----~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW-----CVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceE-----EEEeccccceeEeccCCceEEEEEe
Confidence 57899999999999999999999999999999999999999998 89999 9999999999999999999999999
Q ss_pred CCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCc
Q 000346 232 SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGE 311 (1630)
Q Consensus 232 ~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge 311 (1630)
.+..| ++++.||+..|..+.|-.+|..|+|++.||-|++|++.+... +.++|
T Consensus 535 s~fSC--lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC---------------~~tlD----------- 586 (775)
T KOG0319|consen 535 STFSC--LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC---------------EMTLD----------- 586 (775)
T ss_pred cccee--eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh---------------hhhhh-----------
Confidence 99996 999999999999999999999999999999999999975443 11222
Q ss_pred ccccCCCeEEEEeCCCCCcee
Q 000346 312 AVYPLPRVRALEVHPRLNLAV 332 (1630)
Q Consensus 312 ~vy~l~ri~~v~~HPk~Nl~A 332 (1630)
-..+|+|.+...|..+++.
T Consensus 587 --~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 587 --AHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred --hccceeEEEeecCccceeE
Confidence 2368999999999998665
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=221.16 Aligned_cols=226 Identities=16% Similarity=0.216 Sum_probs=195.5
Q ss_pred CEEEEEECCe-EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE--EEEEcCCCCeEEe
Q 000346 34 ALIAVAIGTY-IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--FVLHSPEKKMESI 109 (1630)
Q Consensus 34 ~lLasgs~Gt-I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--~v~fspdg~~asg 109 (1630)
-+|++++++. |++|...+|.|..+++|. +.|+.+...|+ +..||+++. ..||+||++++.. ...|. +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e-------~ 81 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFE-------G 81 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEe-------c
Confidence 4788888854 999999999999999976 99999999999 889988865 7899999988754 33343 4
Q ss_pred ecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 000346 110 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1630)
Q Consensus 110 s~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~ 189 (1630)
.......+-|..+|.++++|++|+ ++++||++.. .|.+.+. |..+|+++..||+...|++|..+|.|++||+....
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDg-t~kIWdlR~~--~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDG-TVKIWDLRSL--SCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCc-eEEEEeccCc--ccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 445667788999999999999999 9999999986 6766666 67999999999999999999999999999999887
Q ss_pred EEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc----eeEEEeeccCCCeEEEEEeCCCCEEEE
Q 000346 190 VHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP----SMIGIIQVGSQPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 190 ~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~----~lv~tL~gH~~~VssVsfSPdG~lLaS 263 (1630)
+...+-. +..|. ++...|||.+++.+...|+.++|++-+... ..+..++.|...+..+.+|||+++|++
T Consensus 158 c~~~liPe~~~~i~-----sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQ-----SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cccccCCCCCccee-----eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 7777654 56777 999999999999999999999999876421 225668899999999999999999999
Q ss_pred EECCCceEEEEeee
Q 000346 264 LCRDGSLQVWKTRV 277 (1630)
Q Consensus 264 gS~DGtIrIWDl~~ 277 (1630)
+|.|.+++||++..
T Consensus 233 ~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDD 246 (311)
T ss_pred ecCCceEEEEecCC
Confidence 99999999999763
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-23 Score=234.92 Aligned_cols=243 Identities=15% Similarity=0.194 Sum_probs=204.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcE---EEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSR---IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~---i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~- 96 (1630)
.|+-+.||++|++||+++. .+..+|++..... .+++.+| .+|..+.|||| .++|++|+.|..+++||+.+|.+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~tgd~~ 304 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVDTGDLR 304 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccCCcchhh
Confidence 8999999999999999999 5588998765433 5666655 99999999999 99999999999999999999876
Q ss_pred ------------EEEEcCCCCe-EEeecCCeEE----------------------EEEcCCCCEEEEEecCCcEEEEEEc
Q 000346 97 ------------FVLHSPEKKM-ESISVDTEVH----------------------LALTPLQPVVFFGFHRRMSVTVVGT 141 (1630)
Q Consensus 97 ------------~v~fspdg~~-asgs~Dgtv~----------------------L~~spdg~~LaSgs~Dg~tI~IwDl 141 (1630)
+.+|.|||.. ++|+.|+.+. +..++||.++++.+.|. .|++++.
T Consensus 305 ~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~ 383 (519)
T KOG0293|consen 305 HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNR 383 (519)
T ss_pred hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccc-ceeeech
Confidence 7889999998 8899887743 34467899999989999 9999998
Q ss_pred ccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec---CCceeecCcccEEEcC-CCCEE
Q 000346 142 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHP-TLEWL 217 (1630)
Q Consensus 142 ~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~---~~~V~IsGi~sVafSP-Dg~~L 217 (1630)
+.. .++.... ...+|++++.|.+++++++.-.+..|++||+.....++.+.+ ...+- .-+|-- +..++
T Consensus 384 e~~--~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI-----rSCFgg~~~~fi 455 (519)
T KOG0293|consen 384 EAR--VDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII-----RSCFGGGNDKFI 455 (519)
T ss_pred hhh--hhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE-----EeccCCCCcceE
Confidence 776 4444333 356899999999999999999999999999998877777765 22232 445554 55899
Q ss_pred EEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeee
Q 000346 218 FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 218 aSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~ 277 (1630)
++|+.|+.|+||+..+++. +.++.||...|++++|+|. -.++|++|.||+||||....
T Consensus 456 aSGSED~kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCceEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999996 8999999999999999995 55899999999999997653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=212.40 Aligned_cols=240 Identities=17% Similarity=0.200 Sum_probs=200.6
Q ss_pred eeccCCCCCCCCcEEEEEcCC-CCEEEEEEC-CeEEEEECCC---CcEEEEEc-CC-CCEEEEEEeCCCCCEEEEEECCC
Q 000346 12 RHVGRGDHKPLQPHEAAFHPN-QALIAVAIG-TYIIEFDTLT---GSRIASID-IN-SPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 12 qhvGrg~skp~rV~~LaFSPd-G~lLasgs~-GtI~VWDl~t---g~~i~tl~-~~-~~VtsVafSpd~g~lLaSgS~DG 84 (1630)
.+.+|.+ |++.++|||- |..||+++. ..|++|+... -.+...+. +| ..|++++|+|. |++|+++|.|.
T Consensus 9 ~~~gh~~----r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~ 83 (312)
T KOG0645|consen 9 KLSGHKD----RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDA 83 (312)
T ss_pred eecCCCC----cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-CcEEEEeeccc
Confidence 3344555 9999999998 889999999 5599999984 34555555 44 88999999999 99999999999
Q ss_pred eEEEEECCCCcE-EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCC-ccceeeecCCCCCeEEE
Q 000346 85 TIRSCDFDTEQS-FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNL 162 (1630)
Q Consensus 85 tIrVWDl~tge~-~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~-~~~i~il~gH~~~ItsL 162 (1630)
++.||.-..++. ++.. +-|+....-++.++++|.+|++++.|. +|.+|.+..+. ..|..++.+|...|..+
T Consensus 84 t~~Iw~k~~~efecv~~------lEGHEnEVK~Vaws~sG~~LATCSRDK-SVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVAT------LEGHENEVKCVAWSASGNYLATCSRDK-SVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred eEEEeecCCCceeEEee------eeccccceeEEEEcCCCCEEEEeeCCC-eEEEEEecCCCcEEEEeeeccccccccEE
Confidence 999998665543 2111 114454556789999999999999999 99999997542 36889999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcC---CCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCcee
Q 000346 163 ACHPRLPVLYVAYADGLIRAYNIH---TYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1630)
Q Consensus 163 afSPdg~lLaSgS~DGtIrIWDl~---t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~l 238 (1630)
.|||...+|+++|.|.+|++|+-. ...+..++.+ .+.|+ +++|++.|..|+++++|++|+||.+.+.-+
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW-----~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-- 229 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVW-----SLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-- 229 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEE-----EEEecCCCceEEEecCCcceEeeeeccCcc--
Confidence 999999999999999999999866 4578999998 78999 999999999999999999999999774432
Q ss_pred EEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..|+..+..+.|. ...|+|++.|+.|+++.-.
T Consensus 230 ----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 230 ----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ----hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 2477889999998 4689999999999999866
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=240.25 Aligned_cols=247 Identities=16% Similarity=0.189 Sum_probs=218.1
Q ss_pred ccCCCCCCCCcEEEEE-cCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 14 VGRGDHKPLQPHEAAF-HPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 14 vGrg~skp~rV~~LaF-SPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
+|..+ .|..++| .|+.++|++++. ..+++|+..+..+. .+.+| ..|.++....+ |.+|+||+.|.++++|.
T Consensus 320 vG~nd----EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 320 VGYND----EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWR 393 (775)
T ss_pred cCCch----hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeeccc-CcEEEEecCCceEEEEE
Confidence 45555 7888887 578899999999 88999999988876 66666 88999996566 78999999999999998
Q ss_pred CCCCcE----------------EEEEcCCCCe--EEeecCCeEEEEE-------------------------------cC
Q 000346 91 FDTEQS----------------FVLHSPEKKM--ESISVDTEVHLAL-------------------------------TP 121 (1630)
Q Consensus 91 l~tge~----------------~v~fspdg~~--asgs~Dgtv~L~~-------------------------------sp 121 (1630)
++.+.+ +++++..+.. ++++.|.++.+|. .|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 854433 5666555544 8888898877775 45
Q ss_pred CCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCce
Q 000346 122 LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTI 200 (1630)
Q Consensus 122 dg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V 200 (1630)
+...+++|+.|. +.++|++... ....++.+|+..|.++.|+|....++++|.|++|+||.+.+..|+.+|.+ ...|
T Consensus 474 ndkLiAT~SqDk-taKiW~le~~--~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 474 NDKLIATGSQDK-TAKIWDLEQL--RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred CCceEEeccccc-ceeeecccCc--eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence 567899999999 9999999976 78899999999999999999999999999999999999999999999997 8889
Q ss_pred eecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 201 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 201 ~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
. .+.|-.+|..|++++.||.+++|++++++| ..++..|...|++++.++.+.+++||+.||.|.+|.=.
T Consensus 551 l-----ra~F~~~~~qliS~~adGliKlWnikt~eC--~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 551 L-----RASFIRNGKQLISAGADGLIKLWNIKTNEC--EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred E-----eeeeeeCCcEEEeccCCCcEEEEeccchhh--hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 8 999999999999999999999999999997 88999999999999999999999999999999999644
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=217.56 Aligned_cols=268 Identities=11% Similarity=0.129 Sum_probs=218.5
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc--CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID--IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~--~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
.+|++++|+-+|..|++|+. +++.+|+++..+....+. +| +.|-.++|+|.....+++++.|.+|++||++.++++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 48999999999999999999 669999999887666655 44 789999999887889999999999999999999886
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
...... .+.+.+.++|+|.+++.++.|. .|...|.++. +..... .....+..++|+.++.+++.....
T Consensus 101 ~~i~~~--------~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~--~~~~~~-~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 101 ARIETK--------GENINITWSPDGEYIAVGNKDD-RITFIDARTY--KIVNEE-QFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EEeecc--------CcceEEEEcCCCCEEEEecCcc-cEEEEEeccc--ceeehh-cccceeeeeeecCCCCEEEEecCC
Confidence 655432 2446778899999999999999 8999998876 333222 235567889999888888888888
Q ss_pred CeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC
Q 000346 178 GLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 178 GtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP 256 (1630)
|+|.|......+++++++. ...+. |+.|+|+|+|+++|+.|-.+.+||+..--| ++.+..+..+|..++|+.
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCi-----cI~f~p~GryfA~GsADAlvSLWD~~ELiC--~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCI-----CIEFDPDGRYFATGSADALVSLWDVDELIC--ERCISRLDWPVRTLSFSH 241 (313)
T ss_pred ceEEEEeccccccccccccCCcceE-----EEEECCCCceEeeccccceeeccChhHhhh--heeeccccCceEEEEecc
Confidence 9999999999999999986 65565 999999999999999999999999997664 888999999999999999
Q ss_pred CCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCceeEeec
Q 000346 257 MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFA 336 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Alvfa 336 (1630)
||++||++|+|..|-|=++.+.....+-+.. ...-.|+|||+.++.|...+
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-----------------------------~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIPCE-----------------------------GPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEeecc-----------------------------CCceeEEecCCCceeeEEec
Confidence 9999999999999877666543331111100 11235899999999996555
Q ss_pred c
Q 000346 337 N 337 (1630)
Q Consensus 337 ~ 337 (1630)
.
T Consensus 293 d 293 (313)
T KOG1407|consen 293 D 293 (313)
T ss_pred C
Confidence 4
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=227.35 Aligned_cols=245 Identities=20% Similarity=0.261 Sum_probs=205.7
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc---CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID---IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~---~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~- 96 (1630)
-|+|+.|+|||.++++++. |.|.+||-.+|+.+..+. .| +.|.+++|+|| +..+++++.|.+++|||+.++++
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceE
Confidence 6999999999999999988 779999999999999998 55 99999999999 99999999999999999988765
Q ss_pred ------------------------------------------------------EEEEcCCCCe-EEeecCCe-------
Q 000346 97 ------------------------------------------------------FVLHSPEKKM-ESISVDTE------- 114 (1630)
Q Consensus 97 ------------------------------------------------------~v~fspdg~~-asgs~Dgt------- 114 (1630)
+++.+++++. .+++.||.
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 4555666655 56665554
Q ss_pred --------------------------------------------------------------------------------
Q 000346 115 -------------------------------------------------------------------------------- 114 (1630)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (1630)
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence
Q ss_pred ----------------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 115 ----------------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 115 ----------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
-.++.+|++..++.|+.|+ .|++|.+..+.......+..|..+|++++++||+.+||+|...+
T Consensus 431 l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg-kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 431 LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG-KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred EecCCcceeeccccccceEEEcCCCCEEEEecccc-eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence 2234567788888888888 88888887764344446678999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEe--cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC
Q 000346 179 LIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~--~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP 256 (1630)
.+.+||..+.+.....- |...|+ +++|+|+..++++|+-|..|.||++...... +.....|...|+.+.|-.
T Consensus 510 kvv~yd~~s~~~~~~~w~FHtakI~-----~~aWsP~n~~vATGSlDt~Viiysv~kP~~~-i~iknAH~~gVn~v~wld 583 (603)
T KOG0318|consen 510 KVVLYDVASREVKTNRWAFHTAKIN-----CVAWSPNNKLVATGSLDTNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLD 583 (603)
T ss_pred cEEEEEcccCceecceeeeeeeeEE-----EEEeCCCceEEEeccccceEEEEEccChhhh-eEeccccccCceeEEEec
Confidence 99999999887632222 477888 9999999999999999999999999975432 666778998899999986
Q ss_pred CCCEEEEEECCCceEEEEee
Q 000346 257 MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWDl~ 276 (1630)
+ ..+++.+.|-.|++|++.
T Consensus 584 e-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 584 E-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred C-ceEEeccCcceeEEeccc
Confidence 5 578899999999999863
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=232.17 Aligned_cols=240 Identities=16% Similarity=0.238 Sum_probs=209.7
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc---------CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID---------INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~---------~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
.+-|..|||||++|++|+- |.|.+||+.+|+..+.++ ++.+|.|++|+.| ...+++|+.||.|++|.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEEEEEEe
Confidence 6789999999999999998 779999999998766553 3478999999999 9999999999999999999
Q ss_pred CCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 000346 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 93 tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLa 172 (1630)
+|.|.-.|.. ++..|..++.++.++..+++++.|. ++++..+.+| ++.+.+.+|+..|+...|.+||..++
T Consensus 294 tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~-tvRiHGlKSG--K~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 294 TGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQ-TVRIHGLKSG--KCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred cchHHHHhhh------hhccCeeEEEEccCcchhhcccccc-eEEEeccccc--hhHHHhcCccccccceEEcCCCCeEE
Confidence 9988444431 3455778899999999999999999 9999999999 99999999999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec---CCc----------------------eee------------cC------cccEE
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL---DNT----------------------IKL------------LG------AGAFA 209 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~---~~~----------------------V~I------------sG------i~sVa 209 (1630)
+++.||+|++|+..+.+|+.++.. +.. +.+ +| ..+.+
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEE
Confidence 999999999999998877766642 111 111 11 35678
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 210 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 210 fSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
.+|.|.|+++.+.|+.++.+.+.+++ +-.++..|...|..+.-||..++|++-++||.+++|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~--LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGK--LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCc--eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 89999999999999999999999998 4788999999999999999999999999999999995
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=221.64 Aligned_cols=241 Identities=17% Similarity=0.247 Sum_probs=208.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.|.+++.||+.+++++|+. +.-.+|+..+|.....+.+| ..|+++.|+.+ |.+||+|+-+|.|+||+..++..
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEe
Confidence 8999999999999999999 77999999999988888866 99999999999 99999999999999999988865
Q ss_pred --------EEEEcCCCCe-EEeecCCeEEEEE----------------------cCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 97 --------FVLHSPEKKM-ESISVDTEVHLAL----------------------TPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 97 --------~v~fspdg~~-asgs~Dgtv~L~~----------------------spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
-+.|+|.++. +.|+.|+.+-+|. .|+|+.++++..|+ +|++||..+++
T Consensus 145 ~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg-ti~~Wn~ktg~ 223 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG-TIIVWNPKTGQ 223 (399)
T ss_pred ecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc-eEEEEecCCCc
Confidence 5789999988 8899999876664 56788999999999 99999999884
Q ss_pred ccceeeec---------------------------------------------------CCCCCeEEEEE---cCCCCEE
Q 000346 146 RAPTKIKT---------------------------------------------------DLKKPIVNLAC---HPRLPVL 171 (1630)
Q Consensus 146 ~~~i~il~---------------------------------------------------gH~~~ItsLaf---SPdg~lL 171 (1630)
+..... .+...+.|+.+ +..-++.
T Consensus 224 --p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 224 --PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred --eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 222211 12222233333 3344578
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEE
Q 000346 172 YVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITS 251 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~Vss 251 (1630)
|+|+.||+|.|||+...+..+.+.+...|. .+.|-+ ..+|++++.+|.|+.||.++|+. +.++.+|...|.+
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~he~~V~-----~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l--~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICEHEDGVT-----KLKWLN-TDYLLTACANGKVRQWDARTGQL--KFTYTGHQMGILD 373 (399)
T ss_pred hcccccceEEEEecccchhheeccCCCceE-----EEEEcC-cchheeeccCceEEeeeccccce--EEEEecCchheeE
Confidence 899999999999999999988998977788 999999 78999999999999999999995 8999999999999
Q ss_pred EEEeCCCCEEEEEECCCceEEEEe
Q 000346 252 VAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 252 VsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
++++|+.++++|+|.|++.+||++
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999999999999986
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=212.35 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=182.9
Q ss_pred EEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE--EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEe
Q 000346 54 RIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGF 130 (1630)
Q Consensus 54 ~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs 130 (1630)
.++.+++| ++|..++|+|..|..|++|+.|+.||+|+...+.. +...-.+ ++....+.++++|.|++|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-----~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-----GHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-----cchheeeeeeecCCCcEEEEee
Confidence 35566666 88999999997567999999999999999875332 2222222 2334458899999999999999
Q ss_pred cCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CcEEEEEec-CCceeecCcc
Q 000346 131 HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT---YAVHYTLQL-DNTIKLLGAG 206 (1630)
Q Consensus 131 ~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t---~~~i~tL~~-~~~V~IsGi~ 206 (1630)
-|. ++.+|.-..+...|+.++.+|...|.|++|+++|++||+++.|..|-||.+.. ..+...++. ...|.
T Consensus 81 FD~-t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK----- 154 (312)
T KOG0645|consen 81 FDA-TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK----- 154 (312)
T ss_pred ccc-eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc-----
Confidence 999 99999988776689999999999999999999999999999999999999874 367777775 78888
Q ss_pred cEEEcCCCCEEEEEeCCCeEEEEECC-CCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 207 AFAFHPTLEWLFVGDRRGTLLAWDVS-IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 207 sVafSPDg~~LaSgS~DGtVrVWDl~-tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
.+.|||...+|++++.|++|++|+-. .....+++++.+|.+.|++++|++.|..|++++.|++|+||....
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 99999999999999999999999776 555567999999999999999999999999999999999999663
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=222.65 Aligned_cols=214 Identities=19% Similarity=0.229 Sum_probs=191.0
Q ss_pred EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCe-EEeecCCe-------
Q 000346 56 ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTE------- 114 (1630)
Q Consensus 56 ~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~-asgs~Dgt------- 114 (1630)
..+.++ .+|+.+-|+|+ -..++++++|++|++||..++++ .+.|+..|+. ++++.|-.
T Consensus 102 ~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 334444 89999999999 88999999999999999999987 7788888888 87777764
Q ss_pred ----------------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 115 ----------------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 115 ----------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
-++.+.|.|.+|++++.|. +|+.|+..++ -|+.++.+|..+|..++.+.||.++++++.|.
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~-tik~We~~tg--~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN-TIKAWECDTG--YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeeccccc-ceeEEecccc--eeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 3455678899999999999 9999999999 89999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCC---------------CCEEEEEeCCCeEEEEECCCCCceeEEEe
Q 000346 179 LIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPT---------------LEWLFVGDRRGTLLAWDVSIERPSMIGII 242 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPD---------------g~~LaSgS~DGtVrVWDl~tgk~~lv~tL 242 (1630)
++++|-+.++.+...+.. +..|. +++|.|. ++++.+++.|++|++||+.++.+ +.++
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vE-----ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL 330 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVE-----CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTL 330 (406)
T ss_pred eEEEEEeccchhhhhhhccccceE-----EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--EEEE
Confidence 999999999988888876 88888 8888652 25899999999999999999986 8899
Q ss_pred eccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 243 QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 243 ~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
.+|.++|..++|+|.|+||+|+.+|+++++||++....
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 99999999999999999999999999999999985443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=210.95 Aligned_cols=235 Identities=13% Similarity=0.103 Sum_probs=206.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
.|..+.|+-||++.++++. .+|++||...|.+++++.+| ..|.+++.+.| ...|++|+.|..+.+||+++|+..-.|
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeec
Confidence 6999999999999999988 66999999999999999976 88999999999 889999999999999999999886666
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
. ++....-.+.++.+...+++|+-|. ++++||-++....+++++......|.++..+ +..++.|+.||++
T Consensus 98 r-------gH~aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv 167 (307)
T KOG0316|consen 98 R-------GHLAQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV 167 (307)
T ss_pred c-------cccceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence 6 4444556788899999999999999 9999999988768999999889999999985 5689999999999
Q ss_pred EEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCe--EEEEEeCCC
Q 000346 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI--TSVAWLPML 258 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~V--ssVsfSPdG 258 (1630)
|.||++.|+.....- ..+|+ ++.|++|++..+.++.|+++++.|-.+++. ++.+.+|.+.= ...+++...
T Consensus 168 RtydiR~G~l~sDy~-g~pit-----~vs~s~d~nc~La~~l~stlrLlDk~tGkl--L~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYF-GHPIT-----SVSFSKDGNCSLASSLDSTLRLLDKETGKL--LKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred EEEEeecceeehhhc-CCcce-----eEEecCCCCEEEEeeccceeeecccchhHH--HHHhcccccceeeeeeeecccc
Confidence 999999887643222 67888 999999999999999999999999999984 88888988543 345566667
Q ss_pred CEEEEEECCCceEEEEee
Q 000346 259 RLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 259 ~lLaSgS~DGtIrIWDl~ 276 (1630)
.++++||+||.|++||+-
T Consensus 240 thV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eeEEeccCCceEEEEEec
Confidence 899999999999999986
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-22 Score=226.36 Aligned_cols=233 Identities=15% Similarity=0.183 Sum_probs=200.6
Q ss_pred CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCe-EEeecCCeEEEE----------
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTEVHLA---------- 118 (1630)
Q Consensus 62 ~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~-asgs~Dgtv~L~---------- 118 (1630)
.+|..|.|.|+ |+.|++|+..|.+.+|+..+-.. ++.|++++.. +++..++.+++|
T Consensus 97 c~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred cceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 68999999999 99999999999999999743221 8999999999 888888875554
Q ss_pred ------------EcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 000346 119 ------------LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186 (1630)
Q Consensus 119 ------------~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~ 186 (1630)
++|....++++++|+ +|++||.... +....+.+|.-.|.+++|||...++++++.|..|++||.+
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg-~ikiWdf~~~--kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDG-TIKIWDFRMP--KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCC-eEEEEeccCC--chhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 578888999999999 9999999988 6777789999999999999999999999999999999999
Q ss_pred CCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC-CCCEEEEE
Q 000346 187 TYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTL 264 (1630)
Q Consensus 187 t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP-dG~lLaSg 264 (1630)
++.|+.++.+ .+.|. .+.|+|+++||+++|.|..++++|+++.+. +.++++|...|+++.||| ...+|++|
T Consensus 253 Sg~cl~tlh~HKntVl-----~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVL-----AVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred CcchhhhhhhccceEE-----EEEEcCCCCeeEEccCCceEEEEehhHhHH--HHHhhcchhhheeeccccccccceeec
Confidence 9999999987 88898 999999999999999999999999997664 788999999999999999 45689999
Q ss_pred ECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCcee
Q 000346 265 CRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 332 (1630)
Q Consensus 265 S~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~A 332 (1630)
+.||.|..|.+........ . + ......||.++|||--.+++
T Consensus 326 g~Dgsvvh~~v~~~~p~~~----i---~--------------------~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGE----I---P--------------------PAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred cCCCceEEEeccccccccC----C---C--------------------cccccceeeeeccccceeEe
Confidence 9999999999873222000 0 0 02245689999999766655
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=221.89 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=184.5
Q ss_pred EEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC
Q 000346 55 IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR 133 (1630)
Q Consensus 55 i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg 133 (1630)
.+.+.+| ++|+++++.|. .+||++|+.|++|+|||+.+++..++.. |+......+.+++-.+++++++.|+
T Consensus 144 ~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lkltlt-------Ghi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLT-------GHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred hhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeec-------chhheeeeeeecccCceEEEecCCC
Confidence 4455666 99999999998 9999999999999999999998755544 4555667789999999999999999
Q ss_pred cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC
Q 000346 134 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP 212 (1630)
Q Consensus 134 ~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP 212 (1630)
.|++||++.. +.++.+.+|-+.|.|++.+|.-..|++|+.|.++||||+++...+.++.+ .+.|. ++.+.|
T Consensus 216 -~VKCwDLe~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~-----~V~~~~ 287 (460)
T KOG0285|consen 216 -QVKCWDLEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA-----SVMCQP 287 (460)
T ss_pred -eeEEEechhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcce-----eEEeec
Confidence 9999999988 89999999999999999999999999999999999999999999999997 89998 999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 213 TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 213 Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
....+++|+.|++|++||+..++. ..++..|...|.+++.||....+|++|.| .|+-|++.
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p 348 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLP 348 (460)
T ss_pred CCCceEEecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc-cceeccCC
Confidence 888999999999999999999986 77889999999999999999999998877 67888764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-21 Score=208.98 Aligned_cols=246 Identities=16% Similarity=0.169 Sum_probs=206.9
Q ss_pred CcEEEEEcCCCCEEEEEECC-eEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 23 QPHEAAFHPNQALIAVAIGT-YIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~G-tI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.++-|.|+.+|.+|++++.+ .+.||-..+|+.+.++.+| +.|+++..+-+ ...+++|+.|.++++||+++|++
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEe
Confidence 68899999999999999995 4999999999999999977 99999999988 89999999999999999999987
Q ss_pred -------EEEEcCCCCeEEeecCCe-----------------------------------EEEEEcCCCCEEEEEecCCc
Q 000346 97 -------FVLHSPEKKMESISVDTE-----------------------------------VHLALTPLQPVVFFGFHRRM 134 (1630)
Q Consensus 97 -------~v~fspdg~~asgs~Dgt-----------------------------------v~L~~spdg~~LaSgs~Dg~ 134 (1630)
.+.|+.+|..+..+.|.. ....|.+.+..|++|..++
T Consensus 91 k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G- 169 (327)
T KOG0643|consen 91 KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG- 169 (327)
T ss_pred ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC-
Confidence 566777777622222211 3445678889999999999
Q ss_pred EEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCC
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 135 tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg 214 (1630)
.|..||.+++. ..+.....|...|+.+++++|..+++++|.|.+-++||.++..+++++..+.+|+ +.+++|..
T Consensus 170 ~is~~da~~g~-~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN-----~aaisP~~ 243 (327)
T KOG0643|consen 170 SISIYDARTGK-ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVN-----TAAISPLL 243 (327)
T ss_pred cEEEEEcccCc-eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccc-----ceeccccc
Confidence 99999999985 6777778899999999999999999999999999999999999999999999999 99999987
Q ss_pred CEEEEEeCCCeEEE--EECCCCC----------ceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 215 EWLFVGDRRGTLLA--WDVSIER----------PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 215 ~~LaSgS~DGtVrV--WDl~tgk----------~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.+++.|+...-.-| =+.+.++ +..+..+++|-++|++++|||+|+..+||++||.||+..+.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 77777664322221 1222221 01256788999999999999999999999999999998654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=229.57 Aligned_cols=242 Identities=16% Similarity=0.211 Sum_probs=203.9
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------ 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------ 96 (1630)
.|+++++|.+...+++|+.+.|++|+..+.++++++... .+.+..|.|. +.++++|...|.+.+||+.+...
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpg-d~~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPG-DRYIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCC-CceEEEeccCCceEEEEeehhhhhhhhhc
Confidence 799999999999999988899999999999988887532 5555566665 56666666666666666543322
Q ss_pred ------EEEEcCCCCe-EEeecCCe----------------------------------EEEEEcCCCCEEEEEecCCcE
Q 000346 97 ------FVLHSPEKKM-ESISVDTE----------------------------------VHLALTPLQPVVFFGFHRRMS 135 (1630)
Q Consensus 97 ------~v~fspdg~~-asgs~Dgt----------------------------------v~L~~spdg~~LaSgs~Dg~t 135 (1630)
.+..+|+++. ++++.|.+ .++.++|++.+++.+--|. +
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-T 531 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-T 531 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-e
Confidence 4455555555 55555554 4555689999999999999 9
Q ss_pred EEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCC
Q 000346 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 136 I~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg 214 (1630)
|++|-+.+- +....+.||.-+|.|+..+||++++++||.|.+|++|-++-|.|.+.+-. ++.|. ++.|.|..
T Consensus 532 VkVyflDtl--KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm-----~V~F~P~~ 604 (888)
T KOG0306|consen 532 VKVYFLDTL--KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM-----SVQFLPKT 604 (888)
T ss_pred EEEEEecce--eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee-----EEEEcccc
Confidence 999999887 77888999999999999999999999999999999999999999988876 88998 99999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 215 EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 215 ~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..+++++.|+.|+-||-..-++ ++.+.+|...|++++.+|+|.+++|+|.|.+||+|.-.
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~--iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEE--IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eeEEEecCcceEEeechhhhhh--heeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 9999999999999999987775 89999999999999999999999999999999999865
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=216.92 Aligned_cols=236 Identities=17% Similarity=0.205 Sum_probs=196.4
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCC--CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEE
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPT--SGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES 108 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd--~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~as 108 (1630)
+.++++|++ |.+++||.. |+.+..+.+| ++|.+++|.-. ....|++++.|.++++|.++.++..+..... ..
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~ 190 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CR 190 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hc
Confidence 689999999 779999987 8888888866 99998888743 1346999999999999998877541110000 12
Q ss_pred eecCCeEEEEEcCCCCEEEEEecCCcEEEEEEccc-----------------------CCccceeeecCCCCCeEEEEEc
Q 000346 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE-----------------------GGRAPTKIKTDLKKPIVNLACH 165 (1630)
Q Consensus 109 gs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~s-----------------------g~~~~i~il~gH~~~ItsLafS 165 (1630)
|+....-++...+++..+++|+-|. +|.+|+... +.+.++..+.+|..+|.++.|+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~-~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDT-MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccc-eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 5555667788889999999999999 999999221 1134677889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc-eeEEEeec
Q 000346 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SMIGIIQV 244 (1630)
Q Consensus 166 Pdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~-~lv~tL~g 244 (1630)
+ ...+++++.|.+|+.||+.++.++.++.+...++ ++.++|..++|++|+.|..+++||.+++.- .+.+++.+
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~-----~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLN-----CISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred C-CCceEeecccceEEEEEeecccceeeeecCccee-----EeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence 7 6789999999999999999999999999888898 999999999999999999999999998643 24578999
Q ss_pred cCCCeEEEEEeCCCC-EEEEEECCCceEEEEeeeec
Q 000346 245 GSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 245 H~~~VssVsfSPdG~-lLaSgS~DGtIrIWDl~~~~ 279 (1630)
|.+.|.++.|+|... .|+++|.|+++++||++...
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999999999655 68999999999999998655
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=226.19 Aligned_cols=244 Identities=10% Similarity=0.094 Sum_probs=182.5
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEE-------------EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEE
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRI-------------ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIR 87 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i-------------~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIr 87 (1630)
.|+....++++..+++++... ...|+...+..+ ..+.+| +.|++++|+|.++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455556667766666666533 566765543322 134545 89999999993288999999999999
Q ss_pred EEECCCCcEEEEEcCCCCe--EEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEE
Q 000346 88 SCDFDTEQSFVLHSPEKKM--ESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 88 VWDl~tge~~v~fspdg~~--asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLaf 164 (1630)
+||+.++...- ...... ..++......+.++|++ .++++++.|+ +|++||+.++ .....+.+|...|.+++|
T Consensus 102 IWdi~~~~~~~--~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg--~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 102 GWGIPEEGLTQ--NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM-VVNVWDVERG--KAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEecCCCcccc--ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC-EEEEEECCCC--eEEEEEcCCCCceEEEEE
Confidence 99997653200 000011 22445556778899986 6899999999 9999999988 778888999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CC-ceeecCcccEEEcCCCCEEEEEe----CCCeEEEEECCCCCcee
Q 000346 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DN-TIKLLGAGAFAFHPTLEWLFVGD----RRGTLLAWDVSIERPSM 238 (1630)
Q Consensus 165 SPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~-~V~IsGi~sVafSPDg~~LaSgS----~DGtVrVWDl~tgk~~l 238 (1630)
+|++.+|++++.|++|++||+++++.+.++.. .. .+. .+.|++++..+++++ .|+.|++||+++... .
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~-----~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-p 250 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ-----RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-P 250 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce-----EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-c
Confidence 99999999999999999999999998888875 33 333 678999888777654 479999999987543 2
Q ss_pred EEEeecc-CCCeEEEEEeCCCCEEEEEE-CCCceEEEEeee
Q 000346 239 IGIIQVG-SQPITSVAWLPMLRLLVTLC-RDGSLQVWKTRV 277 (1630)
Q Consensus 239 v~tL~gH-~~~VssVsfSPdG~lLaSgS-~DGtIrIWDl~~ 277 (1630)
+.....+ ...+....|++++.+|++++ .|+.|++||+..
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 3333333 34566678899999998887 599999999973
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=211.91 Aligned_cols=236 Identities=15% Similarity=0.251 Sum_probs=204.2
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fs 101 (1630)
.|++.+.+.+-...++++.+. -+|||.-+|..+.+++|..-|.+++|+.| .++|++|+.+..+||||++..+
T Consensus 61 avw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~------ 133 (334)
T KOG0278|consen 61 AVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPK------ 133 (334)
T ss_pred ceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEeccc-chhhhccchHHHhhhhhccCCC------
Confidence 788888888877778887755 99999999999999999899999999999 9999999999999999986432
Q ss_pred CCCCe--EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 102 PEKKM--ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 102 pdg~~--asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
-.. +.++..++..+.|....+.+++..+|+ +||+||.+++ ..++.+. .+++|+++.++++|++|.++. .+.
T Consensus 134 --App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~-tVRLWD~rTg--t~v~sL~-~~s~VtSlEvs~dG~ilTia~-gss 206 (334)
T KOG0278|consen 134 --APPKEISGHTGGIRTVLWCHEDKCILSSADDK-TVRLWDHRTG--TEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSS 206 (334)
T ss_pred --CCchhhcCCCCcceeEEEeccCceEEeeccCC-ceEEEEeccC--cEEEEEe-cCCCCcceeeccCCCEEEEec-Cce
Confidence 222 456777777777777778888889999 9999999999 6666655 367899999999999877664 678
Q ss_pred EEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEe-eccCCCeEEEEEeCCC
Q 000346 180 IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII-QVGSQPITSVAWLPML 258 (1630)
Q Consensus 180 IrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL-~gH~~~VssVsfSPdG 258 (1630)
|++||..+...++.++....|. +...+|+...+++|+.|..++.||+.+++. +..+ .+|.++|.|+.|+|||
T Consensus 207 V~Fwdaksf~~lKs~k~P~nV~-----SASL~P~k~~fVaGged~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPCNVE-----SASLHPKKEFFVAGGEDFKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred eEEeccccccceeeccCccccc-----cccccCCCceEEecCcceEEEEEeccCCce--eeecccCCCCceEEEEECCCC
Confidence 9999999999988887777787 999999999999999999999999999985 5554 8999999999999999
Q ss_pred CEEEEEECCCceEEEEeeeec
Q 000346 259 RLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 259 ~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
...++||+||+|++|.+....
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 999999999999999886443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=225.99 Aligned_cols=236 Identities=16% Similarity=0.147 Sum_probs=207.2
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcC-C-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDI-N-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~-~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.|+++.|+++|.+|++|.. |.|.|||..+.+.+..+.+ | ..|-+++|+ ...+.+|+.|+.|..+|++..+..+.
T Consensus 219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhh
Confidence 7999999999999999999 8899999999999999986 6 899999998 45899999999999999987765333
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEEEEe--C
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAY--A 176 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLaSgS--~ 176 (1630)
. ..++....+.+.+++++..+++|+.|. .+.+||.... .+...+..|...|..++|+| ...+||+|+ .
T Consensus 296 -~-----~~~H~qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~--~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 296 -T-----LQGHRQEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSP--EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred -h-----hhcccceeeeeEECCCCCeeccCCCcc-ceEeccCCCc--cccEEEeccceeeeEeeeCCCccCceEEcCCCc
Confidence 1 113344557789999999999999999 9999999665 78888999999999999999 667888876 8
Q ss_pred CCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEe--CCCeEEEEECCCCCceeEEEeeccCCCeEEEEE
Q 000346 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD--RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAW 254 (1630)
Q Consensus 177 DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS--~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsf 254 (1630)
|++|++||..++..+..+.....|. .+.|++..+-|+++. .++.|.||++.+.+. +..+.+|...|..+++
T Consensus 367 D~~i~fwn~~~g~~i~~vdtgsQVc-----sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~--~~~l~gH~~RVl~la~ 439 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDTGSQVC-----SLIWSKKYKELLSTHGYSENQITLWKYPSMKL--VAELLGHTSRVLYLAL 439 (484)
T ss_pred ccEEEEEEcCCCcEecccccCCcee-----eEEEcCCCCEEEEecCCCCCcEEEEeccccce--eeeecCCcceeEEEEE
Confidence 9999999999999999888888887 999999887666654 477899999998774 8889999999999999
Q ss_pred eCCCCEEEEEECCCceEEEEeee
Q 000346 255 LPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 255 SPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+|||..+++|+.|.++++|++-.
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999998753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=222.88 Aligned_cols=229 Identities=9% Similarity=0.055 Sum_probs=170.4
Q ss_pred CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCe-EEeecCCeEEEEE
Q 000346 42 TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM-ESISVDTEVHLAL 119 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~-asgs~Dgtv~L~~ 119 (1630)
+.|++|+......+..+.+| +.|.+++|+|+++++|++|+.|++|++||+.++.....-..+... +.++......+.+
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 45999998887788888866 899999999975789999999999999999764321000000001 2344556678899
Q ss_pred cCCCCE-EEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-C
Q 000346 120 TPLQPV-VFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-D 197 (1630)
Q Consensus 120 spdg~~-LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~ 197 (1630)
+|++.. +++++.|+ +|++||+.++ .....+. |...|.+++|+|+|.+|++++.|++|+|||+++++.+.++.+ .
T Consensus 134 ~P~g~~iLaSgS~Dg-tIrIWDl~tg--~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 134 NPMNYYIMCSSGFDS-FVNIWDIENE--KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred CCCCCeEEEEEeCCC-eEEEEECCCC--cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 998875 56889999 9999999988 4444444 567899999999999999999999999999999999888875 4
Q ss_pred CceeecCcccEEEcCCCCEEEEEeCCC----eEEEEECCC-CCceeEEEe--eccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 198 NTIKLLGAGAFAFHPTLEWLFVGDRRG----TLLAWDVSI-ERPSMIGII--QVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 198 ~~V~IsGi~sVafSPDg~~LaSgS~DG----tVrVWDl~t-gk~~lv~tL--~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
+.+....+....|++++.+|++++.|+ .|+|||+++ .++ +..+ ..+.+.+......++|.++++|+.|++|
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 433200011345678999999988664 799999996 444 3333 3333333334445568999999999999
Q ss_pred EEEEee
Q 000346 271 QVWKTR 276 (1630)
Q Consensus 271 rIWDl~ 276 (1630)
++|++.
T Consensus 288 r~~e~~ 293 (568)
T PTZ00420 288 RYYQHS 293 (568)
T ss_pred EEEEcc
Confidence 999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=195.79 Aligned_cols=211 Identities=23% Similarity=0.310 Sum_probs=179.2
Q ss_pred EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCe-EEeecCCeEEEE---
Q 000346 56 ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTEVHLA--- 118 (1630)
Q Consensus 56 ~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~-asgs~Dgtv~L~--- 118 (1630)
.++.+| .+|++++|+|+ +++|++++.|+.|++|++.+++. .+.|++++.. ++++.++.+.+|
T Consensus 3 ~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 345544 99999999999 99999999999999999986632 6778888866 767666664444
Q ss_pred -------------------EcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 119 -------------------LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 119 -------------------~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
+++++.++++++.++ .|.+||+.++ .....+..|...|.++.|+|++.++++++.|+.
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDVETG--KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCC-eEEEEECCCc--EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 345556777777788 9999999877 677777789999999999999999998888999
Q ss_pred EEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCC
Q 000346 180 IRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 258 (1630)
Q Consensus 180 IrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG 258 (1630)
|++||+++++....+.. ...+. ++.|+|+++.+++++.|+.|++||+.+++. +..+..|...+.++.|++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVN-----SVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEEEEccccccceeEecCccccc-----eEEECCCcCEEEEecCCCcEEEEECCCCce--ecchhhcCCceEEEEEcCCC
Confidence 99999998888888876 66787 999999999999999999999999998774 66777889999999999999
Q ss_pred CEEEEEECCCceEEEEeee
Q 000346 259 RLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 259 ~lLaSgS~DGtIrIWDl~~ 277 (1630)
.++++++.||.|++|++..
T Consensus 232 ~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred cEEEEEcCCCcEEEEEcCC
Confidence 9999988899999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-20 Score=204.86 Aligned_cols=207 Identities=13% Similarity=0.152 Sum_probs=179.1
Q ss_pred EEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcE
Q 000346 57 SIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMS 135 (1630)
Q Consensus 57 tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~t 135 (1630)
.+.|| +.|+.+.|+|+ |..|++|+.|..|.+|++..... -.+. ..++..-...+-+.+++..+++++.|. +
T Consensus 42 ~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdce-N~~~-----lkgHsgAVM~l~~~~d~s~i~S~gtDk-~ 113 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCE-NFWV-----LKGHSGAVMELHGMRDGSHILSCGTDK-T 113 (338)
T ss_pred hcCCCcceEEEEEECCC-CCeEeecCCcceEEEEecccccc-ceee-----eccccceeEeeeeccCCCEEEEecCCc-e
Confidence 34466 99999999998 99999999999999999643221 1111 123444456788899999999999999 9
Q ss_pred EEEEEcccCCccceeeecCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCC
Q 000346 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 136 I~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~-lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg 214 (1630)
|+.||.+++ ++++.+++|...|.++.-+..|. ++.+++.|+++++||+++..+++++.....++ ++.|..++
T Consensus 114 v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqlt-----Av~f~d~s 186 (338)
T KOG0265|consen 114 VRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLT-----AVGFKDTS 186 (338)
T ss_pred EEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEE-----EEEecccc
Confidence 999999999 89999999999999998554454 67889999999999999999999998878888 99999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 215 EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 215 ~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
..+.+|+-|+.|++||++..+. ..++.||...|+.+..+++|.++.+-+.|.++++||++....
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred cceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 9999999999999999998885 889999999999999999999999999999999999985443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=224.77 Aligned_cols=246 Identities=17% Similarity=0.177 Sum_probs=203.7
Q ss_pred ccceeeeeee--eccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEE
Q 000346 3 WATVQHLDLR--HVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVV 78 (1630)
Q Consensus 3 W~t~q~Lelq--hvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLa 78 (1630)
|+......+. ..||.+ .|++++|...+..|++|+. .++++||+.+|++..++.+| +.|+++...+. .++
T Consensus 233 ~~~~~~~~i~~~l~GH~g----~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~---~~~ 305 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFG----GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF---LLV 305 (537)
T ss_pred eecccceEEEeeccCCCC----CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc---eEe
Confidence 4444444433 456666 9999999988899999997 66999999999999999966 88999888654 888
Q ss_pred EEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCC
Q 000346 79 AILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1630)
Q Consensus 79 SgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ 158 (1630)
+|+.|.+|++|++.++.+.-.+. ++.+...++..+ ++.+++|+.|+ +|++||..++ +|++.+.+|...
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~-------~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~--~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLR-------GHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTG--KCLKSLSGHTGR 373 (537)
T ss_pred eccCCceEEEEeccCcceEEEec-------cccccEEEEEec--CCEEEEEecCc-eEEEEEhhhc--eeeeeecCCcce
Confidence 99999999999999887644443 233334444444 78999999999 9999999988 999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 000346 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 159 ItsLafSPdg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~ 236 (1630)
|.++.+.+. ..+++|+.|++|++||+++. +++.++.+ ..-+. . ....+++|++++.|++|++||..++++
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~-----~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS-----S--LLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc-----c--cccccceeEeccccccEEEeecccCce
Confidence 999988765 89999999999999999999 99999988 44443 3 344578999999999999999999986
Q ss_pred eeEEEeec-cCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 237 SMIGIIQV-GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 237 ~lv~tL~g-H~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
+.++.+ |...|+.+.+. ...+++++.||++++||++...
T Consensus 446 --~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 446 --LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred --eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 888888 67888888876 4678899999999999987544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-20 Score=204.00 Aligned_cols=238 Identities=14% Similarity=0.187 Sum_probs=193.6
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCC------------C------cEEEEEcCC-CCEEEEEEeCCCCCEEEEEEC
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLT------------G------SRIASIDIN-SPVVRMAYSPTSGHAVVAILE 82 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~t------------g------~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~ 82 (1630)
.+++.+|+|||.++++|+.+. |+|.|++. | -.++++-.| .+|+++.|+|. ...|++|+.
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILiS~sr 192 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILISGSR 192 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hheEEeccC
Confidence 688999999999999999966 99999871 1 246666644 99999999999 999999999
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee---cCCCCCe
Q 000346 83 DCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK---TDLKKPI 159 (1630)
Q Consensus 83 DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il---~gH~~~I 159 (1630)
|++|++||+..-...-+|. +.......+++.++|.|.+++.|.+-. ++++||+.+- +|...- ..|++.|
T Consensus 193 D~tvKlFDfsK~saKrA~K-----~~qd~~~vrsiSfHPsGefllvgTdHp-~~rlYdv~T~--QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFK-----VFQDTEPVRSISFHPSGEFLLVGTDHP-TLRLYDVNTY--QCFVSANPDDQHTGAI 264 (430)
T ss_pred CCeEEEEecccHHHHHHHH-----HhhccceeeeEeecCCCceEEEecCCC-ceeEEeccce--eEeeecCcccccccce
Confidence 9999999985321100000 111123457889999999999999888 9999999887 555433 5789999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 000346 160 VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 160 tsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~ 236 (1630)
+++.+++.+++.+++|.||.|++||--+++|+.++.. ...|. +..|..+|+|+++.+.|..|++|.+.++++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc-----Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC-----SAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee-----eEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 9999999999999999999999999888999998873 56665 999999999999999999999999988764
Q ss_pred eeEEEe-------------------------------------------------eccCCCeEEEEEeCCCCEEEEEECC
Q 000346 237 SMIGII-------------------------------------------------QVGSQPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 237 ~lv~tL-------------------------------------------------~gH~~~VssVsfSPdG~lLaSgS~D 267 (1630)
+..+ .+|.+.+..+.-+|.+.-+++||.|
T Consensus 340 --l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 340 --LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred --EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 2111 2577888888888988889999999
Q ss_pred CceEEEEee
Q 000346 268 GSLQVWKTR 276 (1630)
Q Consensus 268 GtIrIWDl~ 276 (1630)
..+|+|--+
T Consensus 418 ~raRFWyrr 426 (430)
T KOG0640|consen 418 FRARFWYRR 426 (430)
T ss_pred ceeeeeeec
Confidence 999999643
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=199.64 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=193.0
Q ss_pred CcEEEEEcCCC-CEEEEEEC-CeEEEEECCC-CcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQ-ALIAVAIG-TYIIEFDTLT-GSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG-~lLasgs~-GtI~VWDl~t-g~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v 98 (1630)
....++|++.. +.+++++. |.+++||+.. ..++..++ |...|.++.|++..+..++++|.|++|++|+........
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~ 141 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ 141 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence 67789999854 34445554 8899999653 34677787 459999999998768889999999999999987776666
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCC-CCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEEEEeC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYA 176 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spd-g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLaSgS~ 176 (1630)
+|. ++.+.+....++|. .+.+++++.|+ ++++||++... +.+ .+..|...|.++.|+. +.+.+++|+.
T Consensus 142 Tf~-------gh~~~Iy~a~~sp~~~nlfas~Sgd~-~l~lwdvr~~g-k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 142 TFN-------GHNSCIYQAAFSPHIPNLFASASGDG-TLRLWDVRSPG-KFM-SIEAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred eec-------CCccEEEEEecCCCCCCeEEEccCCc-eEEEEEecCCC-cee-EEEeccceeEeecccccCCcEEEecCC
Confidence 665 44555556666665 46899999999 99999998874 333 3788999999999998 6778999999
Q ss_pred CCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCC-CCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEE
Q 000346 177 DGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVA 253 (1630)
Q Consensus 177 DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPD-g~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVs 253 (1630)
|+.||+||+++. .++..+.+ .-.|+ .+.|||. ...|++++.|-+++|||...... ++.+...|+.-|..+.
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVR-----kvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVR-----KVKFSPHHASLLASASYDMTVRIWDPERQDS-AIETVDHHTEFVCGLD 285 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEE-----EEecCcchhhHhhhccccceEEecccccchh-hhhhhhccceEEeccc
Confidence 999999999976 45666665 77888 9999995 46789999999999999986543 4677788999999999
Q ss_pred EeC-CCCEEEEEECCCceEEEEe
Q 000346 254 WLP-MLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 254 fSP-dG~lLaSgS~DGtIrIWDl 275 (1630)
|++ ++..+|+++.|+.++||+.
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 998 6779999999999999973
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=211.12 Aligned_cols=242 Identities=15% Similarity=0.159 Sum_probs=201.5
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
-|.+++|-.||++|++|.. |.|+|||..+...++.+..| .+|..+.|+|+++..+++|++|+.+++||+.+......
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~- 148 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE- 148 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE-
Confidence 4789999999999999999 99999998776677778844 99999999999889999999999999999988754223
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 101 SPEKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
.+++.|..++..++|... .+++|+.|+ +|++||++... ..+.. -.|..+|.++.+-|.|..+++++ ...
T Consensus 149 ------l~~htDYVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~-~~v~e-lnhg~pVe~vl~lpsgs~iasAg-Gn~ 218 (487)
T KOG0310|consen 149 ------LSGHTDYVRCGDISPANDHIVVTGSYDG-KVRLWDTRSLT-SRVVE-LNHGCPVESVLALPSGSLIASAG-GNS 218 (487)
T ss_pred ------ecCCcceeEeeccccCCCeEEEecCCCc-eEEEEEeccCC-ceeEE-ecCCCceeeEEEcCCCCEEEEcC-CCe
Confidence 347889999988888765 889999999 99999998873 33333 45899999999999999999987 468
Q ss_pred EEEEEcCCCc-EEEEEe-cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 180 IRAYNIHTYA-VHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 180 IrIWDl~t~~-~i~tL~-~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
|+|||+-+|. .+..+. |...|+ |+++..++..|++|+-|+.|++||+.+.+ ++..+. ..++|.+++.+|+
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVT-----cL~l~s~~~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLsiavs~d 290 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVT-----CLRLASDSTRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLSIAVSPD 290 (487)
T ss_pred EEEEEecCCceehhhhhcccceEE-----EEEeecCCceEeecccccceEEEEccceE--EEEeee-cccceeeEEecCC
Confidence 9999998654 333333 588998 99999999999999999999999987776 466654 3689999999999
Q ss_pred CCEEEEEECCCceEEEEeeeecCCCC
Q 000346 258 LRLLVTLCRDGSLQVWKTRVIINPNR 283 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl~~~~~pnk 283 (1630)
++.++.|-.||.+.+=+......+.+
T Consensus 291 d~t~viGmsnGlv~~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRREVKKKPSK 316 (487)
T ss_pred CceEEEecccceeeeehhhcccCCCc
Confidence 99999999999987775544444333
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=213.10 Aligned_cols=237 Identities=11% Similarity=0.130 Sum_probs=194.8
Q ss_pred CCcEEEEEcCCCCE-EEEEECCeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 22 LQPHEAAFHPNQAL-IAVAIGTYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 22 ~rV~~LaFSPdG~l-Lasgs~GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
..|.+++|+|..++ +|+++.-++.||+..+...++++. ....|.+++|-.| |.++++|+..|.|+|||..+......
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHH
Confidence 37999999997775 777777889999999888888776 5688999999999 99999999999999999654222111
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC-CCEEEEEeCC
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-LPVLYVAYAD 177 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd-g~lLaSgS~D 177 (1630)
+. ++......+.++|.+. .+++|++|+ .+++||+.+. .....+.+|+.+|.|.+|+|- +..+++|+.|
T Consensus 106 ~~-------ah~apv~~~~f~~~d~t~l~s~sDd~-v~k~~d~s~a--~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 106 LY-------AHQAPVHVTKFSPQDNTMLVSGSDDK-VVKYWDLSTA--YVQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred Hh-------hccCceeEEEecccCCeEEEecCCCc-eEEEEEcCCc--EEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 11 2222334455666665 566677777 9999999988 446688999999999999994 5589999999
Q ss_pred CeEEEEEcCCC-cEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC
Q 000346 178 GLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 178 GtIrIWDl~t~-~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP 256 (1630)
|+||+||+++. ..+.++.|+.+|. .+.|-|.|..|++++ ...|+|||+.+|.. ++..+..|...|+|+++..
T Consensus 176 g~vrl~DtR~~~~~v~elnhg~pVe-----~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVELNHGCPVE-----SVLALPSGSLIASAG-GNSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ceEEEEEeccCCceeEEecCCCcee-----eEEEcCCCCEEEEcC-CCeEEEEEecCCce-ehhhhhcccceEEEEEeec
Confidence 99999999987 7888888999999 999999999999887 57899999997754 3445555999999999999
Q ss_pred CCCEEEEEECCCceEEEEee
Q 000346 257 MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWDl~ 276 (1630)
++..|+|+|-|+.|++||+.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred CCceEeecccccceEEEEcc
Confidence 99999999999999999965
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=210.89 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=195.4
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCC----cEEEEEcC-C-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTG----SRIASIDI-N-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg----~~i~tl~~-~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge 95 (1630)
-|.++++.|.|..|++|+.+. |++||+... +..+.+.. . ..|+++.|+++ |..|++.+.....+|+|-+ |.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aqakl~DRd-G~ 246 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQAKLLDRD-GF 246 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-CCeEEEEecCcceeEEccC-Cc
Confidence 689999999999999999955 999999743 33444552 2 78999999999 7777777777899999954 43
Q ss_pred EEEEEcCCCCe---E---EeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeee-----cCCCCCeEEEE
Q 000346 96 SFVLHSPEKKM---E---SISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIK-----TDLKKPIVNLA 163 (1630)
Q Consensus 96 ~~v~fspdg~~---a---sgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-----~gH~~~ItsLa 163 (1630)
..+.|.....+ . -|+.-...+..|+|.. ..+++++.|+ ++++||+.... ...+++ .+..-++++++
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg-tlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG-TLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC-cEEEEecCCch-hheeEEeeccCCCcccCceeee
Confidence 33334332222 1 1222222445677765 5788999999 99999997653 333322 23355789999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEe----c--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCce
Q 000346 164 CHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ----L--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS 237 (1630)
Q Consensus 164 fSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~----~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~ 237 (1630)
|+||+++||.|+.||.|.+||.++....-.+. | ...|+ ++.||+||++|++-+.|+++++||++..+.
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It-----si~FS~dg~~LlSRg~D~tLKvWDLrq~kk- 398 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT-----SISFSYDGNYLLSRGFDDTLKVWDLRQFKK- 398 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee-----EEEeccccchhhhccCCCceeeeecccccc-
Confidence 99999999999999999999987554322222 2 34677 999999999999999999999999997543
Q ss_pred eEEEeecc--CCCeEEEEEeCCCCEEEEEEC------CCceEEEEeeeecCCCCCCCccccccCCccccccccccccccC
Q 000346 238 MIGIIQVG--SQPITSVAWLPMLRLLVTLCR------DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQG 309 (1630)
Q Consensus 238 lv~tL~gH--~~~VssVsfSPdG~lLaSgS~------DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~g 309 (1630)
.+.+..+- ...-+.++|||+.++|++|+. .|++.+||..+... +..++++
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~---------------v~ki~i~------- 456 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT---------------VYKIDIS------- 456 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee---------------EEEecCC-------
Confidence 23333321 245578999999999999873 34677777653322 2233322
Q ss_pred CcccccCCCeEEEEeCCCCCceeEeec
Q 000346 310 GEAVYPLPRVRALEVHPRLNLAVLLFA 336 (1630)
Q Consensus 310 ge~vy~l~ri~~v~~HPk~Nl~Alvfa 336 (1630)
...+..+.|||++|=+.....
T Consensus 457 ------~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 457 ------TASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred ------CceEEEEeecchhhheeeecC
Confidence 334566899999997664433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=210.08 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=192.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
.|++++|.+++..+++++. +.+++|++...+...++.+| ..|+++.|... ...+++|+.|.+|+.||+....|.-+.
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-ccceeeccccchhhhhhhhhhheeccc
Confidence 6999999999999888888 67999999999999999977 99999999987 555999999999999999887774433
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
.|... +..+.+ . ...+++|..|. .|++||.++. .+......+. .|+++..++++..+.+++.|.++
T Consensus 300 l~~S~------cnDI~~--~--~~~~~SgH~Dk-kvRfwD~Rs~--~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 300 LPGSQ------CNDIVC--S--ISDVISGHFDK-KVRFWDIRSA--DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred ccccc------ccceEe--c--ceeeeeccccc-ceEEEeccCC--ceeeEeecCc-ceeeEeeccCCeEEeeecCCCce
Confidence 33222 111111 1 45678888899 9999999988 6777777655 89999999999999999999999
Q ss_pred EEEEcCCCcEEEEEec-----CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCC--CeEEEE
Q 000346 181 RAYNIHTYAVHYTLQL-----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ--PITSVA 253 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~-----~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~--~VssVs 253 (1630)
.+.|+++.....++.. ....+ .+.|||++.|+++|+.||.|+||++.++++ ...+..... .|++++
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwt-----rvvfSpd~~YvaAGS~dgsv~iW~v~tgKl--E~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWT-----RVVFSPDGSYVAAGSADGSVYIWSVFTGKL--EKVLSLSTSNAAITSLS 438 (459)
T ss_pred eeeecccccEEEEeeccccccccccc-----eeEECCCCceeeeccCCCcEEEEEccCceE--EEEeccCCCCcceEEEE
Confidence 9999999999888874 23344 899999999999999999999999999986 444554444 599999
Q ss_pred EeCCCCEEEEEECCCceEEE
Q 000346 254 WLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 254 fSPdG~lLaSgS~DGtIrIW 273 (1630)
|+|.|..+++++.++.+.+|
T Consensus 439 W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EcCCCchhhcccCCcceEec
Confidence 99999999999999999999
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=210.65 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=189.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEE------------cCC-CCEEEEEEeCCCCCEEEEEECCCeEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASI------------DIN-SPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl------------~~~-~~VtsVafSpd~g~lLaSgS~DGtIrV 88 (1630)
+|+++.|++.|..|++.+. ...+|+|-...+..... ++| ..++|.+|+|++.+.+++++.||++|+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 8999999999998888877 66999997744433322 355 789999999998899999999999999
Q ss_pred EECCCCcE---EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCC-ccceeeecCCCC--CeEEE
Q 000346 89 CDFDTEQS---FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKK--PIVNL 162 (1630)
Q Consensus 89 WDl~tge~---~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~-~~~i~il~gH~~--~ItsL 162 (1630)
||++..+. .+...+.+ +..-....+.|++++++|+.|+.|+ +|.+|+..+.. +....+...|.. .|+||
T Consensus 296 Wdv~~~k~q~qVik~k~~~----g~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAG----GKRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSI 370 (641)
T ss_pred EecCCchhheeEEeeccCC----CcccCceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEE
Confidence 99976654 22222222 1111224578999999999999999 99999975432 234556678877 99999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCC-cEEEEEec---CCceeecCcccEEEcCCCCEEEEEeC------CCeEEEEECC
Q 000346 163 ACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDR------RGTLLAWDVS 232 (1630)
Q Consensus 163 afSPdg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~------DGtVrVWDl~ 232 (1630)
.||+||++|++-+.|+++++||++.. +++.+..+ ...-+ .++|||+.++|++|+. .|++.+||..
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t-----dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT-----DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC-----ccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 99999999999999999999999965 45555554 22233 7899999999999974 5789999998
Q ss_pred CCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEE
Q 000346 233 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 233 tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIW 273 (1630)
+-+. +..+.-....|..+.|||.-+-|..|+.||+++|+
T Consensus 446 t~d~--v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 446 TLDT--VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceee--EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 8764 77777778899999999999999999999999886
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=229.31 Aligned_cols=223 Identities=12% Similarity=0.091 Sum_probs=176.8
Q ss_pred CeEEEEECCCCcEEEEEc------CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-EEEEcCCCCe-EEeecCC
Q 000346 42 TYIIEFDTLTGSRIASID------INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVLHSPEKKM-ESISVDT 113 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~------~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-~v~fspdg~~-asgs~Dg 113 (1630)
|-+++|+..+......+. |.+.|++++|+|+ ++++++|+.|+.|++||..+... ....+ ... ...+...
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~ 534 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIH--YPVVELASRSK 534 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccc--cceEEecccCc
Confidence 447788877655544433 3388999999999 99999999999999999754211 00000 000 0011222
Q ss_pred eEEEEEcC-CCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcEE
Q 000346 114 EVHLALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVH 191 (1630)
Q Consensus 114 tv~L~~sp-dg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~~~i 191 (1630)
...+.+++ .+..+++++.|+ +|++||+.++ ..+..+.+|...|++++|+| ++.+|++|+.|++|++||++++.++
T Consensus 535 v~~l~~~~~~~~~las~~~Dg-~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEG-VVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCC-eEEEEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 34455544 578999999999 9999999887 77888899999999999997 7889999999999999999999998
Q ss_pred EEEecCCceeecCcccEEEc-CCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 192 YTLQLDNTIKLLGAGAFAFH-PTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 192 ~tL~~~~~V~IsGi~sVafS-PDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
.++.....+. ++.|+ +++.+|++|+.|+.|++||+++.+. .+..+.+|...|+++.|. ++.+|++++.|++|
T Consensus 612 ~~~~~~~~v~-----~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 612 GTIKTKANIC-----CVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred EEEecCCCeE-----EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 8887766676 89995 5799999999999999999987652 256778999999999997 77899999999999
Q ss_pred EEEEeee
Q 000346 271 QVWKTRV 277 (1630)
Q Consensus 271 rIWDl~~ 277 (1630)
++||++.
T Consensus 685 kiWd~~~ 691 (793)
T PLN00181 685 KLWDLSM 691 (793)
T ss_pred EEEeCCC
Confidence 9999864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=215.42 Aligned_cols=218 Identities=12% Similarity=0.152 Sum_probs=173.0
Q ss_pred CcEEEEEcC-CCCEEEEEEC-CeEEEEECCCC-------cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 23 QPHEAAFHP-NQALIAVAIG-TYIIEFDTLTG-------SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSP-dG~lLasgs~-GtI~VWDl~tg-------~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
.|.+++|+| ++.+|++|+. ++|++||+.++ ..+..+.+| ..|.+++|+|+++++|++++.|++|++||++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 899999999 8899999998 77999999765 346677755 8999999999845799999999999999999
Q ss_pred CCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCC-eEEEEEcCCCCEE
Q 000346 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP-IVNLACHPRLPVL 171 (1630)
Q Consensus 93 tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~-ItsLafSPdg~lL 171 (1630)
+++....+. ++.+....+.+++++..+++++.|+ +|++||++++ ..+..+.+|.+. +..+.|++++..+
T Consensus 157 tg~~~~~l~-------~h~~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg--~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 157 RGKAVEVIK-------CHSDQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDG--TIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred CCeEEEEEc-------CCCCceEEEEEECCCCEEEEecCCC-EEEEEECCCC--cEEEEEecCCCCcceEEEEcCCCCeE
Confidence 887644443 3345667889999999999999999 9999999988 677778888765 4567899988777
Q ss_pred EEEe----CCCeEEEEEcCCCc-EEEEEec--CCceeecCcccEEEcCCCCEEEEEe-CCCeEEEEECCCCCceeEEEee
Q 000346 172 YVAY----ADGLIRAYNIHTYA-VHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQ 243 (1630)
Q Consensus 172 aSgS----~DGtIrIWDl~t~~-~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS-~DGtVrVWDl~tgk~~lv~tL~ 243 (1630)
++++ .|+.|++||+++.. ....... ...+. ...|++++++|++++ .|+.|++||+.+++. +....
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~-----~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~--~~~~~ 299 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALF-----IPFFDEDTNLLYIGSKGEGNIRCFELMNERL--TFCSS 299 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceE-----EEEEcCCCCEEEEEEeCCCeEEEEEeeCCce--EEEee
Confidence 7654 47999999998754 3333332 33444 668999999999887 599999999998874 33333
Q ss_pred c-cCCCeEEEEEeCC
Q 000346 244 V-GSQPITSVAWLPM 257 (1630)
Q Consensus 244 g-H~~~VssVsfSPd 257 (1630)
. +..++..++|.|.
T Consensus 300 ~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 300 YSSVEPHKGLCMMPK 314 (493)
T ss_pred ccCCCCCcceEeccc
Confidence 2 4467788889885
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-18 Score=190.56 Aligned_cols=236 Identities=13% Similarity=0.184 Sum_probs=197.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcC-CCCEEEEEEeCCCCCEEEEEEC--CCeEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHAVVAILE--DCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~-~~~VtsVafSpd~g~lLaSgS~--DGtIrVWDl~tge~~v 98 (1630)
+|.++.|+++|.+|+++++ +.+++||..+++.++++.. +-.|..++|... .+.++.++. |.+||..++.+++..-
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~-~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH-SNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC-CceEEEccCCCCCceEEEEeecCceEE
Confidence 8999999999999999888 7899999999999999984 478889999877 566666665 8999999998888766
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
-|. |+.+....+..+|-+..+++++.|+ +|++||++.. .|...+.-... ..++|+|.|-++|++....
T Consensus 95 YF~-------GH~~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~--~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 95 YFP-------GHKKRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVK--KCQGLLNLSGR--PIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EcC-------CCCceEEEEEecCCCCeEEecccCC-eEEeeEecCC--CCceEEecCCC--cceeECCCCcEEEEecCCC
Confidence 666 6677778899999999999999999 9999999976 66666553333 3588999999999999888
Q ss_pred eEEEEEcCCC--cEEEEEec----CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCe---
Q 000346 179 LIRAYNIHTY--AVHYTLQL----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI--- 249 (1630)
Q Consensus 179 tIrIWDl~t~--~~i~tL~~----~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~V--- 249 (1630)
.|++||+++. .+..++.. ....+ .+.|+|||++|+.++..+.+++.|.-+|. +..++.+|...-
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-----~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWT-----DLEFSPDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLP 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCcccee-----eeEEcCCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcc
Confidence 9999999964 33344432 34455 89999999999999999999999999998 477777776433
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
-+.+|+||++++++|+.||+|.+|++.+.
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 57899999999999999999999999643
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=202.64 Aligned_cols=240 Identities=15% Similarity=0.137 Sum_probs=209.5
Q ss_pred CCcEEEEEcCCCCEEEEEECC-eEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIGT-YIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~G-tI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
..|..+.|||+...+++++.+ .|+||............ |.++|+.+..+|. |.+|+++++|++..+.|++++.+...
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEE
Confidence 389999999999999999994 59999998887766666 5599999999999 99999999999999999999987554
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
.+.++. .-...+..+||||-++.+|..|+ .|++||+.++ .....+.+|+++|..++|+.+|.+|++++.|+.
T Consensus 341 vs~~~s-----~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~--~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 341 VSDETS-----DVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQ--TNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred Eeeccc-----cceeEEeeEcCCceEEeccCCCc-eEEEEEcCCc--cccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 443311 11235678999999999999999 9999999988 788889999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 180 IRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 180 IrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
|++||+|..+...++.. ...+. ++.|++.|.+|+.++.|=.|++++-.+..+.++..+..|.+..+++.|...
T Consensus 413 V~lwDLRKl~n~kt~~l~~~~~v~-----s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQLDEKKEVN-----SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred EEEEEehhhcccceeeccccccce-----eEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 99999998888888876 34577 999999999999998888888888777776678888899989999999999
Q ss_pred CCEEEEEECCCceEEEEe
Q 000346 258 LRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl 275 (1630)
-++++++|.|..++++.+
T Consensus 488 aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 488 AQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceEEeeccchhheEEeec
Confidence 999999999999888754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=198.58 Aligned_cols=252 Identities=17% Similarity=0.147 Sum_probs=194.5
Q ss_pred eeeeeeccCCCCCCCCcEEEEEcCCCC---EEEEEEC-CeEEEEECCCCcEEE----EEcCC-CCEEEEEEeCCCCCEEE
Q 000346 8 HLDLRHVGRGDHKPLQPHEAAFHPNQA---LIAVAIG-TYIIEFDTLTGSRIA----SIDIN-SPVVRMAYSPTSGHAVV 78 (1630)
Q Consensus 8 ~LelqhvGrg~skp~rV~~LaFSPdG~---lLasgs~-GtI~VWDl~tg~~i~----tl~~~-~~VtsVafSpd~g~lLa 78 (1630)
.--.+.+||+. .|.+++|.-... .+++++. .++++|-++.++... .-.+| ..|-+++..++ +..++
T Consensus 135 k~~~~~~Ght~----~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s-gtr~~ 209 (423)
T KOG0313|consen 135 KSIKTIVGHTG----PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS-GTRFC 209 (423)
T ss_pred ceEEEEecCCc----ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-CCeEE
Confidence 33455677888 899888864333 5888888 559999988775432 22366 89999999999 99999
Q ss_pred EEECCCeEEEEECCCCcE----EE--------EEcCCCC----e--EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEE
Q 000346 79 AILEDCTIRSCDFDTEQS----FV--------LHSPEKK----M--ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG 140 (1630)
Q Consensus 79 SgS~DGtIrVWDl~tge~----~v--------~fspdg~----~--asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwD 140 (1630)
+|+.|.+|.+|+..+... .. ...+.+. . +.|+.+....+.|.+ ...+++++-|. +|+.||
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH-TIk~WD 287 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH-TIKVWD 287 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc-eEEEEE
Confidence 999999999999433221 00 0111111 1 334455555666665 67899999999 999999
Q ss_pred cccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---EEEEEec-CCceeecCcccEEEcCCC-C
Q 000346 141 TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA---VHYTLQL-DNTIKLLGAGAFAFHPTL-E 215 (1630)
Q Consensus 141 l~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~---~i~tL~~-~~~V~IsGi~sVafSPDg-~ 215 (1630)
+.++ .++..+.+ ...+.++..+|...+|++|+.|..|++||.+++. ..+++.+ .+.|. ++.|+|.. .
T Consensus 288 letg--~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs-----svkwsp~~~~ 359 (423)
T KOG0313|consen 288 LETG--GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS-----SVKWSPTNEF 359 (423)
T ss_pred eecc--cceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh-----heecCCCCce
Confidence 9999 56666554 5679999999999999999999999999998663 4455555 88998 99999955 5
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 216 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 216 ~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.|++|+.|+++++||+++.+. .+..+.+|...|.++.|.. +.+|++|+.|.+|+|+.-.
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 578899999999999998762 2788999999999999974 5789999999999998754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-19 Score=218.89 Aligned_cols=229 Identities=18% Similarity=0.207 Sum_probs=195.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEE-EcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIAS-IDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~t-l~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.+.|..|+ ...+.+++. .+|++||..++..+.. +.+| +.|++++|... +..+++|+.|.++++||..+|+|...
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEE
Confidence 67788888 556777777 7799999999999888 8877 99999999875 89999999999999999999998555
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
+. ++. .++. ...-....+++|+.|. +|++|++.++ .++.++.+|..+|.++..+ +.++++|+.|++
T Consensus 287 l~-------gh~-stv~-~~~~~~~~~~sgs~D~-tVkVW~v~n~--~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 287 LQ-------GHT-SSVR-CLTIDPFLLVSGSRDN-TVKVWDVTNG--ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred ec-------CCC-ceEE-EEEccCceEeeccCCc-eEEEEeccCc--ceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 54 111 1122 2333445677789999 9999999988 8999999999999999997 789999999999
Q ss_pred EEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC-CceeEEEeeccCCCeEEEEEeCC
Q 000346 180 IRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 180 IrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg-k~~lv~tL~gH~~~VssVsfSPd 257 (1630)
|++||+.+++++.++.+ ...|. ++.+... .++++|+.|++|++||+.+. +| +.++.+|..-|..+.+ .
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~-----sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c--~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVY-----SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC--IHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEE-----EEEecCc-ceEEeeeeccceEeecCCchhhh--hhhhcCCccccccccc--c
Confidence 99999999999999998 88898 8877765 89999999999999999998 65 8899999998866654 5
Q ss_pred CCEEEEEECCCceEEEEeeee
Q 000346 258 LRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl~~~ 278 (1630)
+++|++++.|++|++||....
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred cceeEeccccccEEEeecccC
Confidence 679999999999999988643
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=215.52 Aligned_cols=233 Identities=13% Similarity=0.162 Sum_probs=188.9
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCC--------------------------------C-----------------
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLT--------------------------------G----------------- 52 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~t--------------------------------g----------------- 52 (1630)
.|+++.||+||++||+|+. +-|+||.+.. .
T Consensus 269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 8999999999999999999 5599997654 0
Q ss_pred -----------cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEc
Q 000346 53 -----------SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120 (1630)
Q Consensus 53 -----------~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~s 120 (1630)
+++..+.+| +.|.++.|+.+ ++|++++-|.+||+|++...+|..+|. +.|...++.|+
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~--------HndfVTcVaFn 418 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS--------HNDFVTCVAFN 418 (712)
T ss_pred cCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe--------cCCeeEEEEec
Confidence 122334556 88999999986 899999999999999999888866664 45677889998
Q ss_pred CCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 000346 121 PLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--- 196 (1630)
Q Consensus 121 pdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--- 196 (1630)
|.. +++++|+-|+ .|++|++... .+....+...-|++++|.|||+..++|+.+|.+++|++...+......-
T Consensus 419 PvDDryFiSGSLD~-KvRiWsI~d~---~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 419 PVDDRYFISGSLDG-KVRLWSISDK---KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ccCCCcEeeccccc-ceEEeecCcC---eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 865 6999999999 9999998765 2444455568899999999999999999999999999998777665541
Q ss_pred ------CCceeecCcccEEEcCC-CCEEEEEeCCCeEEEEECCCCCceeEEEeeccC--CCeEEEEEeCCCCEEEEEECC
Q 000346 197 ------DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS--QPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 197 ------~~~V~IsGi~sVafSPD-g~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~--~~VssVsfSPdG~lLaSgS~D 267 (1630)
...|+ .+.|.|. ...+++.+.|..|+|||.++... +..++|+. ..=....|+.||++|+++|+|
T Consensus 495 ~~Kk~~~~rIT-----G~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 495 NKKKKQGKRIT-----GLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL--VHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred cCccccCceee-----eeEecCCCCCeEEEecCCCceEEEeccchhh--hhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 22465 8999983 34577888899999999987663 55666654 333578899999999999999
Q ss_pred CceEEEEee
Q 000346 268 GSLQVWKTR 276 (1630)
Q Consensus 268 GtIrIWDl~ 276 (1630)
..|+||+..
T Consensus 568 s~VYiW~~~ 576 (712)
T KOG0283|consen 568 SWVYIWKND 576 (712)
T ss_pred ceEEEEeCC
Confidence 999999975
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-16 Score=189.57 Aligned_cols=243 Identities=16% Similarity=0.217 Sum_probs=189.7
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----- 96 (1630)
.|+.++|-|||..|+.+.++.+.+||.+.|..+.++++| ..|++++|+.+ |..+++|+.|..|.+|+......
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccceeeecc
Confidence 688999999999999999999999999999999999977 99999999999 99999999999999998653322
Q ss_pred -----EEEEcCCCCe-EEeecC-------------------CeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceee
Q 000346 97 -----FVLHSPEKKM-ESISVD-------------------TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI 151 (1630)
Q Consensus 97 -----~v~fspdg~~-asgs~D-------------------gtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~i 151 (1630)
|+.|+|-.+. ++++.. ..+...|..+|.+++.|..++ +|.+-+-....+-.+..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nG-TIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNG-TISIRNKNGEEKVKIER 171 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCc-eEEeecCCCCcceEEeC
Confidence 7888887665 443321 126678899999999999999 99988754432111222
Q ss_pred ecCCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEEcCCCcEEEEEe-cCCceeecCcccEEEcCCCCEEEEEeCCCe
Q 000346 152 KTDLKKPIVNLACHPRL-----PVLYVAYADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1630)
Q Consensus 152 l~gH~~~ItsLafSPdg-----~lLaSgS~DGtIrIWDl~t~~~i~tL~-~~~~V~IsGi~sVafSPDg~~LaSgS~DGt 225 (1630)
-.+.+.+|.+++|+|.. ..+++.....++.+|.+.. +.+..-. ..-. .+|+.|.++|.|++.|+.|+.
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~Fd-----P~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFD-----PCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCC-----chhheeccCCcEEEEccCCCc
Confidence 23567899999999953 3677777777777776653 2222111 1111 238999999999999999999
Q ss_pred EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 226 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+++|--. |- .+.++.....+|+.+..+|++++++.|+.||+|-.|++-
T Consensus 246 L~~fTR~-Gv--rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRD-GV--RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeec-Ce--EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9998654 32 266666677899999999999999999999999888763
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=201.23 Aligned_cols=203 Identities=14% Similarity=0.154 Sum_probs=170.4
Q ss_pred CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE--EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEE
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVV 139 (1630)
Q Consensus 62 ~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~Iw 139 (1630)
+.+-|..|+|| |++|++|+.||.|.+||+.+|+. .+.+..+..+ ....+...++.++.+...+++|+.|+ .|++|
T Consensus 214 Sh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~f-MMmd~aVlci~FSRDsEMlAsGsqDG-kIKvW 290 (508)
T KOG0275|consen 214 SHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNF-MMMDDAVLCISFSRDSEMLASGSQDG-KIKVW 290 (508)
T ss_pred cchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcce-eecccceEEEeecccHHHhhccCcCC-cEEEE
Confidence 77899999999 99999999999999999999976 4444433333 23356678999999999999999999 99999
Q ss_pred EcccCCccceeeec-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEE
Q 000346 140 GTVEGGRAPTKIKT-DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWL 217 (1630)
Q Consensus 140 Dl~sg~~~~i~il~-gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~L 217 (1630)
.+.+| .|++.+. .|+..|+|+.|+.|+..+++++-|.++|+.-+.+|+++..+.+ ...|+ ...|.+||.++
T Consensus 291 ri~tG--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn-----~a~ft~dG~~i 363 (508)
T KOG0275|consen 291 RIETG--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN-----EATFTDDGHHI 363 (508)
T ss_pred EEecc--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc-----ceEEcCCCCeE
Confidence 99999 8988886 8999999999999999999999999999999999999999998 88898 99999999999
Q ss_pred EEEeCCCeEEEEECCCCCceeEEEeec--cCCCeEEEEEeCC-CCEEEEEECCCceEEEEee
Q 000346 218 FVGDRRGTLLAWDVSIERPSMIGIIQV--GSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 218 aSgS~DGtVrVWDl~tgk~~lv~tL~g--H~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~ 276 (1630)
++++.||+|+||+..+.+| +.+++. ...+|.++..-|. ...++.|...++|+|-++.
T Consensus 364 isaSsDgtvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred EEecCCccEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 9999999999999999886 544443 3355666666553 3456666666677666654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=177.00 Aligned_cols=246 Identities=14% Similarity=0.152 Sum_probs=189.6
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECC------CC--------cE-EEEEcCC-CCEEEEEEeCCCCCEEEEEECCC
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTL------TG--------SR-IASIDIN-SPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~------tg--------~~-i~tl~~~-~~VtsVafSpd~g~lLaSgS~DG 84 (1630)
..|++++|||.|.+.++|+. .+++|--+. .+ .. .+.-+|| +.|.|.+|+|. |++|++|+.|.
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsndk 111 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDK 111 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecCCCc
Confidence 37999999999999999999 777765432 11 11 1222366 99999999999 99999999999
Q ss_pred eEEEEECCCCcE-----------------EEEEcCC----CCe-EEeec----------------------CCeEEEEEc
Q 000346 85 TIRSCDFDTEQS-----------------FVLHSPE----KKM-ESISV----------------------DTEVHLALT 120 (1630)
Q Consensus 85 tIrVWDl~tge~-----------------~v~fspd----g~~-asgs~----------------------Dgtv~L~~s 120 (1630)
+|++.-++...+ .++|-.+ +.. ++++. .+.+--..+
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys 191 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS 191 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence 999987655443 2233211 111 21111 111222345
Q ss_pred CCCCEEEEEecCCcEEEEEEcccCCccceeeecC--C-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 000346 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD--L-----KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 193 (1630)
Q Consensus 121 pdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g--H-----~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~t 193 (1630)
.++-.+++|+.|. +|++||++-. .|+.++.. | +..|.+++..|.|++|++|..|....+||++.++.++.
T Consensus 192 wn~~m~~sgsqdk-tirfwdlrv~--~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 192 WNGAMFASGSQDK-TIRFWDLRVN--SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred ecCcEEEccCCCc-eEEEEeeecc--ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 5667889999999 9999999887 67766521 2 36789999999999999999999999999999999999
Q ss_pred Eec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC--CceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 194 LQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE--RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 194 L~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg--k~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
+.. ...|. ++.|+|...|+++|+.|..|++-|++-. ....+-....|...+..+.|||..-.+++.|.|.++
T Consensus 269 f~phsadir-----~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 269 FHPHSADIR-----CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eCCCcccee-----EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence 875 88899 9999999999999999999999998843 111234566789999999999998889999999999
Q ss_pred EEEEee
Q 000346 271 QVWKTR 276 (1630)
Q Consensus 271 rIWDl~ 276 (1630)
.+|-++
T Consensus 344 tlwa~~ 349 (350)
T KOG0641|consen 344 TLWALN 349 (350)
T ss_pred EEeccC
Confidence 999753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=203.02 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=173.8
Q ss_pred CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----------EEEEcCCCCe-EEeecCCeEEEEEcCCC-------
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----------FVLHSPEKKM-ESISVDTEVHLALTPLQ------- 123 (1630)
Q Consensus 62 ~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----------~v~fspdg~~-asgs~Dgtv~L~~spdg------- 123 (1630)
..|+|+.+.. ..+++|..|++|++||.++..| .++..-+.+. ++|+.|.++.+|.-.++
T Consensus 198 kgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 198 KGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred CceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence 6799999954 5899999999999999887665 3444445667 99999999999974432
Q ss_pred -------------CEEEEEecCCcEEEEEEcccCC-ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 000346 124 -------------PVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA 189 (1630)
Q Consensus 124 -------------~~LaSgs~Dg~tI~IwDl~sg~-~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~ 189 (1630)
.++++++.|. +|.+||+.... ..+...+.||...|..+.|+ .++++++|.|.+|++|++.+++
T Consensus 275 hHceaVLhlrf~ng~mvtcSkDr-siaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 275 HHCEAVLHLRFSNGYMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred hhcceeEEEEEeCCEEEEecCCc-eeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee
Confidence 4678999999 99999997652 24667789999999999995 5599999999999999999999
Q ss_pred EEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC
Q 000346 190 VHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 190 ~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG 268 (1630)
+++++.+ ...|- |+.| .++++++|+.|.+|++||+..|.+ ++.++||..-|.++.|. .+.|++|+.||
T Consensus 352 fvRtl~gHkRGIA-----ClQY--r~rlvVSGSSDntIRlwdi~~G~c--LRvLeGHEeLvRciRFd--~krIVSGaYDG 420 (499)
T KOG0281|consen 352 FVRTLNGHKRGIA-----CLQY--RDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFD--NKRIVSGAYDG 420 (499)
T ss_pred eehhhhcccccce-----ehhc--cCeEEEecCCCceEEEEeccccHH--HHHHhchHHhhhheeec--Cceeeeccccc
Confidence 9999997 77776 6666 578999999999999999999996 88899999999999995 46899999999
Q ss_pred ceEEEEeeeecCC
Q 000346 269 SLQVWKTRVIINP 281 (1630)
Q Consensus 269 tIrIWDl~~~~~p 281 (1630)
+|+|||+.....|
T Consensus 421 kikvWdl~aaldp 433 (499)
T KOG0281|consen 421 KIKVWDLQAALDP 433 (499)
T ss_pred eEEEEecccccCC
Confidence 9999999877664
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=214.85 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=196.5
Q ss_pred CcEEEEEcCCCCEEEEEEC---CeEEEEECCC------------CcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeE
Q 000346 23 QPHEAAFHPNQALIAVAIG---TYIIEFDTLT------------GSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTI 86 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~---GtI~VWDl~t------------g~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtI 86 (1630)
+|.+|+.||||..+++|+. +.++||+.+. .+.+.+.. |.+.|+|+.|++| |++||+|++|+.|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v 93 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLV 93 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEeeccCcceE
Confidence 6999999999999999994 4588998751 22344455 5599999999999 9999999999999
Q ss_pred EEEECCCCcE-EEEEcCCCC---------e-EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCC
Q 000346 87 RSCDFDTEQS-FVLHSPEKK---------M-ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL 155 (1630)
Q Consensus 87 rVWDl~tge~-~v~fspdg~---------~-asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH 155 (1630)
.||....... .+..+..+. . +.++......+.|+|++.++++++.|. +|.+|+..+. .+++++.+|
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn-sViiwn~~tF--~~~~vl~~H 170 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN-SVIIWNAKTF--ELLKVLRGH 170 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc-eEEEEccccc--eeeeeeecc
Confidence 9999874111 111110000 0 334555567889999999999999999 9999999998 899999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeC----CCeEEEE
Q 000346 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDR----RGTLLAW 229 (1630)
Q Consensus 156 ~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~----DGtVrVW 229 (1630)
.+.|..+.|+|-|++||+-+.|++|+||++.+..+.+.+.. +....-..+..+.|+|||.+|++... -.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 99999999999999999999999999999888888877764 11111012348999999999998753 4468888
Q ss_pred ECCCCCceeEEEeeccCCCeEEEEEeCC-------------CC----EEEEEECCCceEEEEee
Q 000346 230 DVSIERPSMIGIIQVGSQPITSVAWLPM-------------LR----LLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 230 Dl~tgk~~lv~tL~gH~~~VssVsfSPd-------------G~----lLaSgS~DGtIrIWDl~ 276 (1630)
+-.+.+. -..+-||..++.++.|+|. +. .+|+||.|++|.||...
T Consensus 251 eR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 251 ERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred ecCCcee--eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 8776663 5678899999999999991 11 68999999999999875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=207.46 Aligned_cols=221 Identities=9% Similarity=0.049 Sum_probs=167.3
Q ss_pred CcEEEEEcCC-CCEEEEEEC-CeEEEEECCCCc--------EEEEEcCC-CCEEEEEEeCCCCC-EEEEEECCCeEEEEE
Q 000346 23 QPHEAAFHPN-QALIAVAIG-TYIIEFDTLTGS--------RIASIDIN-SPVVRMAYSPTSGH-AVVAILEDCTIRSCD 90 (1630)
Q Consensus 23 rV~~LaFSPd-G~lLasgs~-GtI~VWDl~tg~--------~i~tl~~~-~~VtsVafSpd~g~-lLaSgS~DGtIrVWD 90 (1630)
.|.+++|+|+ +.+|++|+. ++|+|||+.++. .+..+.+| ..|.+++|+|+ +. +|++++.|++|++||
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~-g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM-NYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC-CCeEEEEEeCCCeEEEEE
Confidence 8999999997 789999998 779999997642 23456655 89999999998 55 567999999999999
Q ss_pred CCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEE-----EEc
Q 000346 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL-----ACH 165 (1630)
Q Consensus 91 l~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsL-----afS 165 (1630)
+++++....+.. .+....+.++++|.++++++.|+ .|++||.+++ ..+..+.+|.+.+.+. .|+
T Consensus 155 l~tg~~~~~i~~--------~~~V~SlswspdG~lLat~s~D~-~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 155 IENEKRAFQINM--------PKKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred CCCCcEEEEEec--------CCcEEEEEECCCCCEEEEEecCC-EEEEEECCCC--cEEEEEecccCCceeEEEEeeeEc
Confidence 998875433321 23456788999999999999999 9999999988 7778888998765432 345
Q ss_pred CCCCEEEEEeCCC----eEEEEEcCC-CcEEEEEecCCceeecCcccEEE-cCCCCEEEEEeCCCeEEEEECCCCCceeE
Q 000346 166 PRLPVLYVAYADG----LIRAYNIHT-YAVHYTLQLDNTIKLLGAGAFAF-HPTLEWLFVGDRRGTLLAWDVSIERPSMI 239 (1630)
Q Consensus 166 Pdg~lLaSgS~DG----tIrIWDl~t-~~~i~tL~~~~~V~IsGi~sVaf-SPDg~~LaSgS~DGtVrVWDl~tgk~~lv 239 (1630)
+++.+|++++.|+ +|+|||+++ ..++.++..+.... .....| .+++.++++|+.|++|++|++..+....+
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~---~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA---PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc---ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 8888999887664 799999995 56666655422221 002233 44688999999999999999987753223
Q ss_pred EEeeccCCCeEEEEEeCCCC
Q 000346 240 GIIQVGSQPITSVAWLPMLR 259 (1630)
Q Consensus 240 ~tL~gH~~~VssVsfSPdG~ 259 (1630)
..+. +..++.+++|.|+..
T Consensus 301 ~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 301 NEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred cccc-cCCCccceEEccccc
Confidence 3332 557788999999643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=185.91 Aligned_cols=237 Identities=16% Similarity=0.178 Sum_probs=190.7
Q ss_pred ccCCCCCCCCcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEEC
Q 000346 14 VGRGDHKPLQPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 14 vGrg~skp~rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl 91 (1630)
.|||. .|..++.+.|...+++|+.+. |.+||++||+.++.+.+| +.|+.++|+.+ ...+++|+.|.++++||.
T Consensus 56 sghG~----EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 56 SGHGH----EVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDC 130 (307)
T ss_pred cCCCc----eeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEc
Confidence 45666 899999999999999999855 999999999999999977 99999999998 999999999999999998
Q ss_pred CCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEE
Q 000346 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 92 ~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lL 171 (1630)
++... .|-.- +.-..|+...+.. .+..|+.|+.|+ +++.||++.| .....+. .++|+++.|++|++..
T Consensus 131 RS~s~----ePiQi-ldea~D~V~Si~v--~~heIvaGS~DG-tvRtydiR~G--~l~sDy~--g~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 131 RSRSF----EPIQI-LDEAKDGVSSIDV--AEHEIVAGSVDG-TVRTYDIRKG--TLSSDYF--GHPITSVSFSKDGNCS 198 (307)
T ss_pred ccCCC----Cccch-hhhhcCceeEEEe--cccEEEeeccCC-cEEEEEeecc--eeehhhc--CCcceeEEecCCCCEE
Confidence 76532 22111 1123455555544 346799999999 9999999998 4444444 5689999999999999
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCC-
Q 000346 172 YVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP- 248 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~- 248 (1630)
+.++.|+++++.|-.+|+.+....+ ..... ...+++....++++|+.||.|.+||+..... +..+..|...
T Consensus 199 La~~l~stlrLlDk~tGklL~sYkGhkn~eyk----ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~--~sk~~~~~~v~ 272 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYKGHKNMEYK----LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ--ISKLSVVSTVI 272 (307)
T ss_pred EEeeccceeeecccchhHHHHHhcccccceee----eeeeecccceeEEeccCCceEEEEEecccee--eeeeccCCcee
Confidence 9999999999999999999888876 22221 1567777778999999999999999998874 7777777776
Q ss_pred eEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 249 ITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 249 VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
|.++++||.-..|+++. ++.+..|.
T Consensus 273 v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EEeeecccCccceeEec-CCceecee
Confidence 89999999877776655 45666664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=203.75 Aligned_cols=236 Identities=15% Similarity=0.156 Sum_probs=195.4
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCCc--EEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTGS--RIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~--~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v 98 (1630)
.|+.+.|-++...|++|+.+. |++|++..++ .+.++.+. +.|+++.|.++ +.++++.+.|+.+++|+++..+.--
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~ 255 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRH 255 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhh
Confidence 689999999989999999955 9999998766 56677766 89999999999 8999999999999999997765432
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
+ ++|+.|....+-+......+++|+.|+ +|+.||+.+. .|.++... ...+..|..+ ...+++|..|+
T Consensus 256 T-------LsGHtdkVt~ak~~~~~~~vVsgs~DR-tiK~WDl~k~--~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 256 T-------LSGHTDKVTAAKFKLSHSRVVSGSADR-TIKLWDLQKA--YCSKTVLP-GSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred h-------hcccccceeeehhhccccceeeccccc-hhhhhhhhhh--heeccccc-cccccceEec--ceeeeeccccc
Confidence 3 336666666666655555599999999 9999999987 67766542 3456667765 55789999999
Q ss_pred eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeecc----CCCeEEEEE
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG----SQPITSVAW 254 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH----~~~VssVsf 254 (1630)
+||+||+++..+.......+.|+ ++..++++..|++++.|.++.+.|+++.+. ..++... ....+.+.|
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vt-----Sl~ls~~g~~lLsssRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVT-----SLDLSMDGLELLSSSRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ceEEEeccCCceeeEeecCccee-----eEeeccCCeEEeeecCCCceeeeecccccE--EEEeeccccccccccceeEE
Confidence 99999999999999999877998 999999999999999999999999998763 4444432 245789999
Q ss_pred eCCCCEEEEEECCCceEEEEeeeec
Q 000346 255 LPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 255 SPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
||++.|+++||.||.|+||++.+..
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCce
Confidence 9999999999999999999987544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=187.47 Aligned_cols=239 Identities=13% Similarity=0.193 Sum_probs=182.9
Q ss_pred CcEEEEEcC--CCCEEEEE-------ECCeEEEEECCCCcEEEEEc---CCCCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 23 QPHEAAFHP--NQALIAVA-------IGTYIIEFDTLTGSRIASID---INSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 23 rV~~LaFSP--dG~lLasg-------s~GtI~VWDl~tg~~i~tl~---~~~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
.=.++.||| .+++.+++ +.|++.|.+...+.-+..+. -...+.+++|++...+.+++++.||++++||
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 457899999 33333222 22569999987555444444 4488999999998788999999999999999
Q ss_pred CCCCcE-EEEEcCCCCeEEeecCCeEEEEEcC-CCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-C
Q 000346 91 FDTEQS-FVLHSPEKKMESISVDTEVHLALTP-LQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-R 167 (1630)
Q Consensus 91 l~tge~-~v~fspdg~~asgs~Dgtv~L~~sp-dg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-d 167 (1630)
...... ...|....+ ....+-+.+ .+..+++++-|+ +|++|+...+ ..+.++.+|...|...+||| .
T Consensus 90 ~~~~s~Pi~~~kEH~~-------EV~Svdwn~~~r~~~ltsSWD~-TiKLW~~~r~--~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKR-------EVYSVDWNTVRRRIFLTSSWDG-TIKLWDPNRP--NSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred cCCCCcchhHHHhhhh-------heEEeccccccceeEEeeccCC-ceEeecCCCC--cceEeecCCccEEEEEecCCCC
Confidence 533222 222221111 112233333 345677779999 9999998877 78889999999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC-CCCEEEEEeCCCeEEEEECCCCCceeEEEeecc
Q 000346 168 LPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 168 g~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH 245 (1630)
.++++++|.|+++++||++.......+.. ...+. ++.|+. +.+.++||+.|+.|++||+++-+. .+..+.+|
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil-----~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-pl~eL~gh 233 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL-----CCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-PLFELNGH 233 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccceeE-----eecccccCCcEEEecCCCceEEEEehhhccc-cceeecCC
Confidence 78999999999999999986544444554 66777 999998 677899999999999999998653 37788999
Q ss_pred CCCeEEEEEeCC-CCEEEEEECCCceEEEEeee
Q 000346 246 SQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 246 ~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~ 277 (1630)
.-.|+.+.|||. ..+|+|+|.|-++||||...
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 999999999995 45899999999999999763
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=205.37 Aligned_cols=270 Identities=17% Similarity=0.171 Sum_probs=212.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCC-cEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTG-SRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg-~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.-+.|+|.|+|..|.+++. |.|++|+.... +.-.++. +...|.+++-. +++|++|+.+++|.+|.+..++..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~-- 89 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED-- 89 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc--
Confidence 4688999999999999988 77999998766 4444555 44777777664 559999999999999998776531
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
+- ++-..-....+.++.+|.+++.|++|- .|++.+.... ...+.+.+|+.+|.++.|+|++.+||+.+.||.
T Consensus 90 ----~i-L~Rftlp~r~~~v~g~g~~iaagsdD~-~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 90 ----TI-LARFTLPIRDLAVSGSGKMIAAGSDDT-AVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred ----ce-eeeeeccceEEEEecCCcEEEeecCce-eEEEEecccc--chheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 00 111112346678889999999999999 9999999888 678889999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEec---CCceeecC-cccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEe
Q 000346 180 IRAYNIHTYAVHYTLQL---DNTIKLLG-AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL 255 (1630)
Q Consensus 180 IrIWDl~t~~~i~tL~~---~~~V~IsG-i~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfS 255 (1630)
|++||+.++.+..++.+ ........ .+.++|+|++..++....|+.|++|+...++.........|...++++.|+
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 99999999998888874 11110011 247899999888888888999999999988753333344455669999999
Q ss_pred CCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCceeEee
Q 000346 256 PMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLF 335 (1630)
Q Consensus 256 PdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Alvf 335 (1630)
|.|.|||+++.||.|.|||+.+... . -...+|.+.+|+|.-|.++++.
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~~--------~------------------------~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHER--------H------------------------EFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccchh--------c------------------------cccceeEEEecCCCCCeeEEEe
Confidence 9999999999999999999986221 0 1145678889999999888765
Q ss_pred cc
Q 000346 336 AN 337 (1630)
Q Consensus 336 a~ 337 (1630)
+.
T Consensus 290 ~~ 291 (933)
T KOG1274|consen 290 AL 291 (933)
T ss_pred ec
Confidence 54
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-19 Score=214.29 Aligned_cols=238 Identities=13% Similarity=0.152 Sum_probs=190.1
Q ss_pred CcEEEEEcC-CCCEEEEEEC-CeEEEEECCC---CcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHP-NQALIAVAIG-TYIIEFDTLT---GSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSP-dG~lLasgs~-GtI~VWDl~t---g~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
.+..|.|+. +.++||+++. |.|.+||+.. .+.+..|. |...|++++|++...++|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 455677875 5678999999 8899999986 44555666 5589999999998789999999999999999987665
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS 175 (1630)
..+|. +..+..+.+.++|.. ..++++.+.| .+.+||++... .|...+..|.++|.|+.|||++.+||+|+
T Consensus 169 ~~t~~-------~nSESiRDV~fsp~~~~~F~s~~dsG-~lqlWDlRqp~-r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 169 KSTFR-------SNSESIRDVKFSPGYGNKFASIHDSG-YLQLWDLRQPD-RCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred ccccc-------ccchhhhceeeccCCCceEEEecCCc-eEEEeeccCch-hHHHHhhcccCceEEEeecCCCceeeecC
Confidence 44443 234455666776654 5677777777 99999999876 89999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCc--EEEEEecCCceeecCcccEEEcCCCCE-EEEEe--CCCeEEEEECCCCCceeEEEeeccCCCeE
Q 000346 176 ADGLIRAYNIHTYA--VHYTLQLDNTIKLLGAGAFAFHPTLEW-LFVGD--RRGTLLAWDVSIERPSMIGIIQVGSQPIT 250 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~--~i~tL~~~~~V~IsGi~sVafSPDg~~-LaSgS--~DGtVrVWDl~tgk~~lv~tL~gH~~~Vs 250 (1630)
.|+.|+|||..+.+ .+.++....+|. +|.|-|+.++ |++++ .|-.|+|||++..-. ...++..|+..++
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~-----rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-P~~t~~eH~~~vt 313 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVG-----RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-PYATFLEHTDSVT 313 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceee-----eeeeccCccchhhhhhccccceEEEEeeccccc-cceeeeccCcccc
Confidence 99999999988654 445555577787 9999997655 56665 488999999986421 2567889999999
Q ss_pred EEEEeC-CCCEEEEEECCCceEEEEe
Q 000346 251 SVAWLP-MLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 251 sVsfSP-dG~lLaSgS~DGtIrIWDl 275 (1630)
.++|.. |...+.+++.||+|..-.+
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhh
Confidence 999965 5668899999999865443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-18 Score=213.30 Aligned_cols=238 Identities=16% Similarity=0.187 Sum_probs=192.0
Q ss_pred CCcEEEEEcCCCCEEEEEECCe-EEEEECCC------------------CcEEEEEcCC-CCEEEEEEeCCCCCEEEEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIGTY-IIEFDTLT------------------GSRIASIDIN-SPVVRMAYSPTSGHAVVAIL 81 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~Gt-I~VWDl~t------------------g~~i~tl~~~-~~VtsVafSpd~g~lLaSgS 81 (1630)
..|.|+.|+|||++||+|+++. |.||.... .+.+..+.+| +.|.+++|+|+ +.+||+++
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s 148 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVS 148 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEec
Confidence 3899999999999999999955 99999872 1256677755 99999999999 99999999
Q ss_pred CCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCC------
Q 000346 82 EDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL------ 155 (1630)
Q Consensus 82 ~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH------ 155 (1630)
.|++|.+||..+.++.-.+. ++....-.+.|.|.|+++++-++|+ +|++|++..- .+.+...++
T Consensus 149 ~DnsViiwn~~tF~~~~vl~-------~H~s~VKGvs~DP~Gky~ASqsdDr-tikvwrt~dw--~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLR-------GHQSLVKGVSWDPIGKYFASQSDDR-TLKVWRTSDW--GIEKSITKPFEESPL 218 (942)
T ss_pred ccceEEEEccccceeeeeee-------cccccccceEECCccCeeeeecCCc-eEEEEEcccc--eeeEeeccchhhCCC
Confidence 99999999998875533332 3333345678999999999999999 9999997653 444544433
Q ss_pred CCCeEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC-----CCC----------
Q 000346 156 KKPIVNLACHPRLPVLYVAY----ADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-----TLE---------- 215 (1630)
Q Consensus 156 ~~~ItsLafSPdg~lLaSgS----~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-----Dg~---------- 215 (1630)
......+.|+|||.+|++.. .-.++.|.+-.++++-..|-+ ..++. ++.|+| ...
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~e-----vvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVE-----VVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceE-----EEEeChHHhccccccCCccCCCcc
Confidence 34678899999999999875 334789999888888888876 88898 999998 111
Q ss_pred --EEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 216 --WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 216 --~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.+++|+.|++|.||.....++ +.-...-....|.+++|+|||..|..+|.||+|.+.++.
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RP-l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRP-LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCc-hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 678999999999999987776 222223335789999999999999999999999999886
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-19 Score=204.14 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=200.3
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCC---cEEEEEc---CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTG---SRIASID---INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg---~~i~tl~---~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
-|.++++|...+++++|+.|.|+|||+... ..+..+. ....|+++..+|| |+.|++|+.-.++.|||+.....
T Consensus 421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-grtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC-CceEEeccccceeeeeeccCCCc
Confidence 678899999999999999999999999733 3455554 3478999999999 99999999999999999865432
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~ 176 (1630)
.+.-. .+.+.-....+..+||.++.++++.|+ .|.+||+... ..++.+.+|...+.||.+++||..|.+|+.
T Consensus 500 rikae-----ltssapaCyALa~spDakvcFsccsdG-nI~vwDLhnq--~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 500 RIKAE-----LTSSAPACYALAISPDAKVCFSCCSDG-NIAVWDLHNQ--TLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred chhhh-----cCCcchhhhhhhcCCccceeeeeccCC-cEEEEEcccc--eeeecccCCCCCceeEEecCCCceeecCCC
Confidence 11110 222222335677899999999999999 9999999988 889999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC
Q 000346 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 177 DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP 256 (1630)
|.+||.||++.++.+....-...|. ++.++|++.||++|-.++.+.|......+ ...+..|.+-|.++.|.+
T Consensus 572 DntvRcWDlregrqlqqhdF~SQIf-----SLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHDFSSQIF-----SLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ccceeehhhhhhhhhhhhhhhhhhe-----ecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecc
Confidence 9999999999987766555577888 99999999999999999999888777554 456778999999999999
Q ss_pred CCCEEEEEECCCceEEEEee
Q 000346 257 MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWDl~ 276 (1630)
.|+++++.+.|.-+..|...
T Consensus 644 cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred cCceeeecCchhhhhhccCc
Confidence 99999999999999999865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=198.86 Aligned_cols=246 Identities=15% Similarity=0.184 Sum_probs=187.6
Q ss_pred CcEEEEEcCCCCEEEEE-EC-CeEEEEECCCCcE----------EEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEE
Q 000346 23 QPHEAAFHPNQALIAVA-IG-TYIIEFDTLTGSR----------IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSC 89 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasg-s~-GtI~VWDl~tg~~----------i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVW 89 (1630)
.|+.+.+-|..+.|+++ +. +.|.|||+.+..- -.++.+| ..=.+++|++...-.|++++.|++|++|
T Consensus 126 EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw 205 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW 205 (422)
T ss_pred cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEE
Confidence 67777888877655554 44 6699999874321 1145555 5588899998867799999999999999
Q ss_pred ECCCCcEE-EEEcCCCCe-EEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC
Q 000346 90 DFDTEQSF-VLHSPEKKM-ESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1630)
Q Consensus 90 Dl~tge~~-v~fspdg~~-asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP 166 (1630)
|+...... .... -+. ..++.+..--+.+++.. ..+.++++|+ .+.+||+++...++.+...+|+..|.|++|+|
T Consensus 206 di~~~~~~~~~~~--p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~-~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp 282 (422)
T KOG0264|consen 206 DINAESKEDKVVD--PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG-KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP 282 (422)
T ss_pred eccccccCCcccc--ceEEeecCCcceehhhccccchhhheeecCCC-eEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence 98654320 0000 001 22334444445666554 5677888888 99999999633378888899999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCC-CCEEEEEeCCCeEEEEECCCC--------
Q 000346 167 -RLPVLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIE-------- 234 (1630)
Q Consensus 167 -dg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPD-g~~LaSgS~DGtVrVWDl~tg-------- 234 (1630)
++..||+||.|++|++||+|+. +++.++.+ ...|. .|.|+|. ...|++++.|+.+.|||+..-
T Consensus 283 ~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~-----~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 283 FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF-----QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred CCCceEEeccCCCcEEEeechhcccCceeccCCCcceE-----EEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 6678999999999999999975 46777776 88898 9999995 467888899999999999752
Q ss_pred ----CceeEEEeeccCCCeEEEEEeCCCC-EEEEEECCCceEEEEee
Q 000346 235 ----RPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 235 ----k~~lv~tL~gH~~~VssVsfSPdG~-lLaSgS~DGtIrIWDl~ 276 (1630)
.+.++..-.||...|..++|+|... .|+|.++|+.+.||++.
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2234566789999999999999766 57889999999999987
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=186.85 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=188.6
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCC--CEEEEEECCCeEEEEECCCCcEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSG--HAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g--~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
..++|++.+ ++++|+|+. .+|+|||..+...+..+-.| +.|+++.|.+. - .+|++|++||.|.+|+....++.
T Consensus 44 ~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~-~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 44 GSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPP-LSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred cceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCC-cchhheeeecCCCcEEEEEcCCeEEe
Confidence 378999986 899999999 77999999999888888855 99999999976 4 39999999999999998776553
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
-.+- ++......+..||.+.+-++.+.|+ .++.||+..+....+..+ ...-+.+.|+|.|.+++++..+
T Consensus 121 ~slK-------~H~~~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~Gr~a~v~~L---~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 121 KSLK-------AHKGQVTDLSIHPSGKLALSVGGDQ-VLRTWNLVRGRVAFVLNL---KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred eeec-------ccccccceeEecCCCceEEEEcCCc-eeeeehhhcCccceeecc---CCcceeeEEcCCCCEEEEEecc
Confidence 3333 2233456788999999999999999 999999998842222222 2344559999999999888764
Q ss_pred CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEE--e
Q 000346 178 GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAW--L 255 (1630)
Q Consensus 178 GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsf--S 255 (1630)
.|-+|.+.+-.....+.....+. ++.|. ++..|++|.+|+.|++||..+..+ ...+.+|...|-++.+ .
T Consensus 190 -~i~i~q~d~A~v~~~i~~~~r~l-----~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~--~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENPKRIL-----CATFL-DGSELLVGGDNEWISLKDTDSDTP--LTEFLAHENRVKDIASYTN 260 (362)
T ss_pred -EEEEEecccHhHhhhhhccccce-----eeeec-CCceEEEecCCceEEEeccCCCcc--ceeeecchhheeeeEEEec
Confidence 68899988877766665544454 56665 567899999999999999998776 7789999999999985 4
Q ss_pred CCCCEEEEEECCCceEEEEeeee
Q 000346 256 PMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 256 PdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
|++.+|+|+|.||.|+|||++..
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 67889999999999999999854
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-17 Score=197.99 Aligned_cols=260 Identities=14% Similarity=0.156 Sum_probs=205.9
Q ss_pred CCcEEEEEcCCCC---EEEEEECCeEEEEECCC-Cc------EEEEEc--CC-CCEEEEEEeCCCCCEEEEEECCCeEEE
Q 000346 22 LQPHEAAFHPNQA---LIAVAIGTYIIEFDTLT-GS------RIASID--IN-SPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1630)
Q Consensus 22 ~rV~~LaFSPdG~---lLasgs~GtI~VWDl~t-g~------~i~tl~--~~-~~VtsVafSpd~g~lLaSgS~DGtIrV 88 (1630)
.++.+++|-|++. .|+.-..+++..|.++. +. .+..++ +| ..|++++++.+ ...+++| ..++|++
T Consensus 321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sg-a~~Siki 398 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASG-AGESIKI 398 (888)
T ss_pred hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeec-CCCcEEE
Confidence 4899999988654 34444446788887764 21 123343 56 88999999998 6666665 5689999
Q ss_pred EECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC
Q 000346 89 CDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1630)
Q Consensus 89 WDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg 168 (1630)
|+.++.+|..++. .+...+..+.|.+.+++.|...| .+.++|+.+. ..+.+...|.+.|.+++.+||+
T Consensus 399 Wn~~t~kciRTi~---------~~y~l~~~Fvpgd~~Iv~G~k~G-el~vfdlaS~--~l~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 399 WNRDTLKCIRTIT---------CGYILASKFVPGDRYIVLGTKNG-ELQVFDLASA--SLVETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred EEccCcceeEEec---------cccEEEEEecCCCceEEEeccCC-ceEEEEeehh--hhhhhhhccccceeeeeecCCC
Confidence 9999998866654 22556778889999999999999 9999999988 6777778999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC-----CcE--------EEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 169 PVLYVAYADGLIRAYNIHT-----YAV--------HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 169 ~lLaSgS~DGtIrIWDl~t-----~~~--------i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
..+++||.|.+|++||..- +.. .++++.++.|. |+.+||||++|+++--|++|+||-+.+-+
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL-----~v~~Spdgk~LaVsLLdnTVkVyflDtlK 541 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL-----CVSVSPDGKLLAVSLLDNTVKVYFLDTLK 541 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE-----EEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence 9999999999999999751 111 13333466676 99999999999999999999999999877
Q ss_pred ceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCccccc
Q 000346 236 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYP 315 (1630)
Q Consensus 236 ~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~ 315 (1630)
. .-++-||.-+|.|+..+||+++++|||.|.+|+||-++-... ...||..
T Consensus 542 F--flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC------HKS~fAH---------------------- 591 (888)
T KOG0306|consen 542 F--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC------HKSFFAH---------------------- 591 (888)
T ss_pred e--eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh------hhhhhcc----------------------
Confidence 4 667899999999999999999999999999999998775443 2233332
Q ss_pred CCCeEEEEeCCCCCc
Q 000346 316 LPRVRALEVHPRLNL 330 (1630)
Q Consensus 316 l~ri~~v~~HPk~Nl 330 (1630)
-+.+..+.|-|+..+
T Consensus 592 dDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHL 606 (888)
T ss_pred cCceeEEEEccccee
Confidence 356778889887544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=187.42 Aligned_cols=248 Identities=13% Similarity=0.128 Sum_probs=199.0
Q ss_pred ccCCCCCCCCcEEEEEcCCCCEEEEEECC-eEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEEC
Q 000346 14 VGRGDHKPLQPHEAAFHPNQALIAVAIGT-YIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 14 vGrg~skp~rV~~LaFSPdG~lLasgs~G-tI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl 91 (1630)
.||.+ .|+.++-....+.+.+++.+ +.+||.+++|.|+..+.+| +.|++++|++. +.++++++.|++-.||..
T Consensus 145 ~GHkD----GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 145 EGHKD----GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKA 219 (481)
T ss_pred ccccc----ceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHH
Confidence 45555 89999988888888888884 5999999999999999977 99999999999 999999999999999972
Q ss_pred C----CCc----------EEEEE------------cCCCCe-------EEeecCCeEEEEEcCCCCEEEEEecCCcEEEE
Q 000346 92 D----TEQ----------SFVLH------------SPEKKM-------ESISVDTEVHLALTPLQPVVFFGFHRRMSVTV 138 (1630)
Q Consensus 92 ~----tge----------~~v~f------------spdg~~-------asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~I 138 (1630)
. ..+ .-... ..++.. ++++..-.+..-|...+..+++++.|+ +-.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR-TAnl 298 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR-TANL 298 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc-ccee
Confidence 1 111 00011 111111 111111112333456678899999999 9999
Q ss_pred EEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCCCE
Q 000346 139 VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEW 216 (1630)
Q Consensus 139 wDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~ 216 (1630)
||++++ ..+..+.+|....+.++-||..+++++++.|.+.++||++.. ..+..|++ ...|+ ++.|.-|.+
T Consensus 299 wDVEtg--e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT-----S~vF~~dd~- 370 (481)
T KOG0300|consen 299 WDVETG--EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT-----SVVFNTDDR- 370 (481)
T ss_pred eeeccC--ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccccee-----EEEEecCCc-
Confidence 999999 899999999999999999999999999999999999999843 45677777 88898 999998754
Q ss_pred EEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 217 LFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 217 LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+++|++|.+|+|||+++.+. .+.+++. .++++.+..+..+++|+.-..+..|++||++-
T Consensus 371 vVSgSDDrTvKvWdLrNMRs-plATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRS-PLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred eeecCCCceEEEeeeccccC-cceeeec-CCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 88999999999999998754 3556654 67899999999989999988889999999973
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-16 Score=187.10 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=196.8
Q ss_pred CCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcE-EEEEcCC--CCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 18 DHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSR-IASIDIN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 18 ~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~-i~tl~~~--~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
+.+|..|.|++|+.+.+.||++-. |.|.+|++..+-. ...+.++ +.|-+++|++ +..|.+.+.+|.|.-||+.+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEeccc
Confidence 457889999999999999999888 8899999987644 3444433 8899999994 57788888999999999998
Q ss_pred CcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 94 EQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 94 ge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
++....+.+.+ ...+.++.+|.+..++.|++|+ .+..++...+.......+...++.|.+++|+|++..++.
T Consensus 100 lk~~~~~d~~g-------g~IWsiai~p~~~~l~IgcddG-vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 100 LKQKYNIDSNG-------GAIWSIAINPENTILAIGCDDG-VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred CceeEEecCCC-------cceeEEEeCCccceEEeecCCc-eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 88766666442 2457788899999999999999 777777766632233444555789999999999999999
Q ss_pred EeCCCeEEEEEcCCCcEEEEEe----c-C----CceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec
Q 000346 174 AYADGLIRAYNIHTYAVHYTLQ----L-D----NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 244 (1630)
Q Consensus 174 gS~DGtIrIWDl~t~~~i~tL~----~-~----~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g 244 (1630)
|+.||.|++||..++..++... . . --|+ ++.|-.++ .|++|...|+|.+||...+.. ++.+..
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-----Sv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL--iqS~~~ 243 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-----SVLFLRDS-TIASGDSAGTVTFWDSIFGTL--IQSHSC 243 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEE-----EEEEeecC-cEEEecCCceEEEEcccCcch--hhhhhh
Confidence 9999999999999988776332 1 1 1234 77777564 689999999999999999884 888899
Q ss_pred cCCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 245 GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 245 H~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
|...|.+++..+++.++++++.|+.|.-+.....
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 9999999999999999999999999988876643
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=196.45 Aligned_cols=245 Identities=15% Similarity=0.197 Sum_probs=187.5
Q ss_pred ccCCCCCCCCcEEEEEcCCC-CEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 14 VGRGDHKPLQPHEAAFHPNQ-ALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 14 vGrg~skp~rV~~LaFSPdG-~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
-||-+ .|.|++=||.. ..+++|+. |.|++||+.+..++.+++.| +.|+.++++. ..++++++|.+|+.|.
T Consensus 63 ~gHrd----GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 63 DGHRD----GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWK 135 (433)
T ss_pred ccccc----ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeee
Confidence 34555 89999999987 67889888 78999999999999999955 8999999976 4788999999999998
Q ss_pred CCCCcE---------------------------EEEEcCCC--Ce--EEeecCCeEEEEEcCCCC-EEEEEecCCcEEEE
Q 000346 91 FDTEQS---------------------------FVLHSPEK--KM--ESISVDTEVHLALTPLQP-VVFFGFHRRMSVTV 138 (1630)
Q Consensus 91 l~tge~---------------------------~v~fspdg--~~--asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~I 138 (1630)
++..-. +-.|...- .. .+-+.|...++-++|... +|++|..|+ .|.+
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr-sIvL 214 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR-SIVL 214 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC-ceEE
Confidence 543211 11122211 11 333344446666777664 677777999 9999
Q ss_pred EEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCCCE
Q 000346 139 VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEW 216 (1630)
Q Consensus 139 wDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~ 216 (1630)
||++++ .+++... .+..-+.++|+|..-.|.+|+.|..++.||++.. .++....+ .+.|. +++|+|.|+-
T Consensus 215 yD~R~~--~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~-----dVdfsptG~E 286 (433)
T KOG0268|consen 215 YDLRQA--SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM-----DVDFSPTGQE 286 (433)
T ss_pred EecccC--Cccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEE-----EeccCCCcch
Confidence 999998 4443322 1334567999998888999999999999999865 34444444 67777 9999999999
Q ss_pred EEEEeCCCeEEEEECCCCCceeEEEee-ccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 217 LFVGDRRGTLLAWDVSIERPSMIGIIQ-VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 217 LaSgS~DGtVrVWDl~tgk~~lv~tL~-gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+++||.|.+|+||..+.+.. ..+.. .-...|.++.|+.|.++++|||.|+.|++|..+
T Consensus 287 fvsgsyDksIRIf~~~~~~S--RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHS--RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hccccccceEEEeecCCCcc--hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 99999999999999987753 11111 113679999999999999999999999999876
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=200.16 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=178.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----- 96 (1630)
.|+.++|+++|..+++++. ..|++||++||+++..+.....++++.|+|++.+.+++|+.|+.|+.||+++++.
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd 339 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD 339 (503)
T ss_pred hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence 8999999999999999999 5699999999999999998899999999999559999999999999999999876
Q ss_pred -------EEEEcCCCCe-EEeecCCeEEEEE-----------------------cCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 97 -------FVLHSPEKKM-ESISVDTEVHLAL-----------------------TPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 97 -------~v~fspdg~~-asgs~Dgtv~L~~-----------------------spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
.+.|-++++. ++.+.|.++.+|. +|.+++++.-+.|. .|.++.+....
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~ 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPF 418 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc-eEEEEeccccc
Confidence 7889999999 8899999877774 68888999999999 89998876542
Q ss_pred -ccceeeecCC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCC-CCEEEEE
Q 000346 146 -RAPTKIKTDL--KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPT-LEWLFVG 220 (1630)
Q Consensus 146 -~~~i~il~gH--~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPD-g~~LaSg 220 (1630)
....+.+.+| .+.-..+.|||||.+|++|+.||.+.+||.++-+.+..++. +..+. .+.|||. ...+++|
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci-----~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI-----GVDWHPVEPSKVATC 493 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE-----EEEecCCCcceeEec
Confidence 1344567788 46678899999999999999999999999999999999987 77887 9999994 4678999
Q ss_pred eCCCeEEEEE
Q 000346 221 DRRGTLLAWD 230 (1630)
Q Consensus 221 S~DGtVrVWD 230 (1630)
+.||.|++||
T Consensus 494 ~w~G~Ikiwd 503 (503)
T KOG0282|consen 494 GWDGLIKIWD 503 (503)
T ss_pred ccCceeEecC
Confidence 9999999996
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-17 Score=199.29 Aligned_cols=248 Identities=15% Similarity=0.222 Sum_probs=208.1
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
.+|+++.=+|--..++.|.. |+|.++|+..++.+.++++. ++|+.++|..|+...+++|+..|.+.+||++..+.
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 48999999999999999998 99999999999999999987 99999999999667888888889999999987654
Q ss_pred --------------------------------------------------------EEEEc-CCCCe-EEeecCCe----
Q 000346 97 --------------------------------------------------------FVLHS-PEKKM-ESISVDTE---- 114 (1630)
Q Consensus 97 --------------------------------------------------------~v~fs-pdg~~-asgs~Dgt---- 114 (1630)
++.|. ..+.. .+.+.|.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 01111 11111 22222221
Q ss_pred --------------------------------------------------------------------------------
Q 000346 115 -------------------------------------------------------------------------------- 114 (1630)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (1630)
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence
Q ss_pred ---------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee---cCCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 000346 115 ---------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK---TDLKKPIVNLACHPRLPVLYVAYADGLIRA 182 (1630)
Q Consensus 115 ---------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il---~gH~~~ItsLafSPdg~lLaSgS~DGtIrI 182 (1630)
..++.++.|+..+.|...+ +|.++++++| .....+ ..|+.+|+.++...-++.+++++.+|.+++
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G-~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKG-TIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCC-eEEEEEcccC--eeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 3445567788888888899 9999999988 455555 589999999999988899999999999999
Q ss_pred EEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEE
Q 000346 183 YNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV 262 (1630)
Q Consensus 183 WDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLa 262 (1630)
||......+..+.....+. .+.++.....++.+.+|-.|+++|..+.+ +++.+.+|++.|++++|||||++|+
T Consensus 520 w~f~~k~l~~~l~l~~~~~-----~iv~hr~s~l~a~~~ddf~I~vvD~~t~k--vvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSIT-----GIVYHRVSDLLAIALDDFSIRVVDVVTRK--VVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred EecCCcceeeeeccCCCcc-----eeeeeehhhhhhhhcCceeEEEEEchhhh--hhHHhhccccceeeeEeCCCCcEEE
Confidence 9999998888887777777 88999988899999999999999999888 4889999999999999999999999
Q ss_pred EEECCCceEEEEeeeec
Q 000346 263 TLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 263 SgS~DGtIrIWDl~~~~ 279 (1630)
+++.|++||+||+.+..
T Consensus 593 sasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGT 609 (910)
T ss_pred EeecCCcEEEEeccCcc
Confidence 99999999999987443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=194.33 Aligned_cols=207 Identities=18% Similarity=0.217 Sum_probs=176.4
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v 98 (1630)
|..|+|++-+|+|.+|+.|.- +.|++|.+.+|..+..+..| ..|+++.|+.| +.+|++||.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~----- 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD----- 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEe-----
Confidence 446999999999999999966 99999999999999999877 99999999999 99999999999999999611
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC--CEEEEEeC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL--PVLYVAYA 176 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg--~lLaSgS~ 176 (1630)
.++ ++. ++ +. .+...+.+|+-+|+++...+.| ..++++|.
T Consensus 155 lv~-------------------a~~--------~~---------~~--~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 155 LVS-------------------ADN--------DH---------SV--KPLHIFSDHTLSITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred ecc-------------------ccc--------CC---------Cc--cceeeeccCcceeEEEEecCCCccceEEEecC
Confidence 111 111 11 12 6677788899999999888753 48999999
Q ss_pred CCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC--------------ceeEEEe
Q 000346 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER--------------PSMIGII 242 (1630)
Q Consensus 177 DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk--------------~~lv~tL 242 (1630)
|.++++||+..+..+.++.....+. +++.+|-++.+++|+.+|.|.+.++.... ..-+..+
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~si~-----av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~ 271 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSSIK-----AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL 271 (476)
T ss_pred CceEEEEEeccceeeEEEecCCcce-----eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence 9999999999999998888888888 99999999999999999999988765421 1125677
Q ss_pred eccCC--CeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 243 QVGSQ--PITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 243 ~gH~~--~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.+|.+ .|+|++.+-||.+|++|+.||.|+|||+.
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 88988 99999999999999999999999999986
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-18 Score=193.95 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=170.5
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC--CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~--~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
.|.-+.||||.++|++++. ..+.+||+.+|.+...+.+. ..+.+++|.|| |..+++|+.|+++..||++....
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~~~~W 349 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNILGNW 349 (519)
T ss_pred ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcchhhcc
Confidence 8999999999999999988 55999999999999998843 78999999999 99999999999999999876533
Q ss_pred ---------EEEEcCCCCe-EEeecCCe---------------------EEEEEcCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 97 ---------FVLHSPEKKM-ESISVDTE---------------------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 97 ---------~v~fspdg~~-asgs~Dgt---------------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
+++.++||+. +....|.. .++..+.++.++++--.+. .|++||+...
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e~- 427 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ-EIHLWDLEEN- 427 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC-eeEEeecchh-
Confidence 7888899988 55555544 3445577788777777888 9999999966
Q ss_pred ccceeeecCCCC--CeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC-CCCEEEEE
Q 000346 146 RAPTKIKTDLKK--PIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVG 220 (1630)
Q Consensus 146 ~~~i~il~gH~~--~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSg 220 (1630)
..++.+.||+. .+-.-+|-- +..++++||.|+.|+||+..+++++.++.+ ...|+ +|+|+| +...+|++
T Consensus 428 -~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN-----cVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 428 -KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN-----CVSWNPADPEMFASA 501 (519)
T ss_pred -hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee-----EEecCCCCHHHhhcc
Confidence 78888888854 444445544 557999999999999999999999999998 89999 999999 55678999
Q ss_pred eCCCeEEEEECCC
Q 000346 221 DRRGTLLAWDVSI 233 (1630)
Q Consensus 221 S~DGtVrVWDl~t 233 (1630)
++||+|+||-...
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999997653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-17 Score=177.78 Aligned_cols=225 Identities=17% Similarity=0.212 Sum_probs=187.8
Q ss_pred CcEEEEEcCCC-CEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQ-ALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG-~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
.|-.++|+|.. .++++++. .+|++||...++++..+...+.=.-+.|+|+ |+++++++.|..|...|.++.+....+
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehh
Confidence 78889998854 57777777 5699999999999999987755566889999 999999999999999998776542221
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
.- .. -...+.++.++++++.....| +|.+...-.- +++..+..|.....|+.|+|+|++||+|+.|..+
T Consensus 145 ~~--~~------e~ne~~w~~~nd~Fflt~GlG-~v~ILsypsL--kpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 145 QF--KF------EVNEISWNNSNDLFFLTNGLG-CVEILSYPSL--KPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred cc--cc------eeeeeeecCCCCEEEEecCCc-eEEEEecccc--ccccccccCCcceEEEEECCCCceEeecccccee
Confidence 10 00 112344446666777777778 8999988766 8899999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC
Q 000346 181 RAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 259 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~ 259 (1630)
.+||+...-|.+.+.- +-+|+ .+.|+.||++|++|+.|..|-|=++.+|.. +..++ |.++...++|||...
T Consensus 214 SLWD~~ELiC~R~isRldwpVR-----TlSFS~dg~~lASaSEDh~IDIA~vetGd~--~~eI~-~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 214 SLWDVDELICERCISRLDWPVR-----TLSFSHDGRMLASASEDHFIDIAEVETGDR--VWEIP-CEGPTFTVAWHPKRP 285 (313)
T ss_pred eccChhHhhhheeeccccCceE-----EEEeccCcceeeccCccceEEeEecccCCe--EEEee-ccCCceeEEecCCCc
Confidence 9999999999999987 88999 999999999999999999999999999974 54443 578899999999999
Q ss_pred EEEEEECC
Q 000346 260 LLVTLCRD 267 (1630)
Q Consensus 260 lLaSgS~D 267 (1630)
+||-++.|
T Consensus 286 LLAyA~dd 293 (313)
T KOG1407|consen 286 LLAYACDD 293 (313)
T ss_pred eeeEEecC
Confidence 99988765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=188.02 Aligned_cols=220 Identities=18% Similarity=0.192 Sum_probs=182.3
Q ss_pred cEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCe-EEeecCCeEEEE
Q 000346 53 SRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTEVHLA 118 (1630)
Q Consensus 53 ~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~-asgs~Dgtv~L~ 118 (1630)
..+.+|. |...|.+++.+|+ .+++++|+.|..-.+|++.+++. ++.|+.+|.+ +++..++.+.+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3456677 5599999999997 99999999999999999998865 8889999999 888888774443
Q ss_pred ----------------------EcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 000346 119 ----------------------LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1630)
Q Consensus 119 ----------------------~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~ 176 (1630)
+||.+..++.|+.|+ .+.+|.+.++ ...+++.+|..++++=.|.|+|+.+++++.
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG-svWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG-SVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCC-cEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEec
Confidence 588889999999999 9999999887 678899999999999999999999999999
Q ss_pred CCeEEEEEcCCCcEEEEEec-C----Cce------------------ee------------c------------CcccE-
Q 000346 177 DGLIRAYNIHTYAVHYTLQL-D----NTI------------------KL------------L------------GAGAF- 208 (1630)
Q Consensus 177 DGtIrIWDl~t~~~i~tL~~-~----~~V------------------~I------------s------------Gi~sV- 208 (1630)
||+|++||..++.++..+.. + ..+ .+ . +.-++
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988877751 0 000 00 0 01122
Q ss_pred --EEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 209 --AFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 209 --afSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
.|+..-++.++|+-||+|.|||+...+ ++....|...|..+.|-+ ..+|++++.||.|+.||.++...
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred hcccccccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 334455678899999999999999877 455667899999999999 78999999999999999986654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=206.79 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=162.6
Q ss_pred EEEEc-CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------------------------------
Q 000346 55 IASID-IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------------------------------ 96 (1630)
Q Consensus 55 i~tl~-~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------------------------------ 96 (1630)
.+.+. .| +.|+++.|++| |++||+||.|+.|+||.+...+.
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 34444 44 99999999999 99999999999999998865111
Q ss_pred ---------E-------EEEcCCCCe-EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCe
Q 000346 97 ---------F-------VLHSPEKKM-ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPI 159 (1630)
Q Consensus 97 ---------~-------v~fspdg~~-asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~I 159 (1630)
+ ..|++.--. ..|+.+.++.+.|+.+ ++|++++.|. +|++|++... .|++++. |...|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDK-TVRLWh~~~~--~CL~~F~-HndfV 412 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDK-TVRLWHPGRK--ECLKVFS-HNDFV 412 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccc-cEEeecCCCc--ceeeEEe-cCCee
Confidence 0 001110001 2234444466667665 4899999999 9999999877 8999887 99999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCcee
Q 000346 160 VNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1630)
Q Consensus 160 tsLafSP-dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~l 238 (1630)
+|++|+| |.++|++||.||.||||++...+++.-.....-|+ +++|.|||++.++|+.+|.+++|+....+...
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-----Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-----AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-----eEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 9999999 88999999999999999999887766555577888 99999999999999999999999988655311
Q ss_pred EEEeecc------CCCeEEEEEeCCC-CEEEEEECCCceEEEEee
Q 000346 239 IGIIQVG------SQPITSVAWLPML-RLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 239 v~tL~gH------~~~VssVsfSPdG-~lLaSgS~DGtIrIWDl~ 276 (1630)
-..+..| ...|+.+.|.|.. ..+++.+.|..|||+|.+
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence 1122222 2379999999843 346666889999999995
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=178.94 Aligned_cols=236 Identities=13% Similarity=0.190 Sum_probs=191.0
Q ss_pred CCcEEEEEcCCCCEEEEEEC---CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG---TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~---GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
-.|..++|......++.++. .+|+..++.+.+.++.+.+| ..|++++.+|- +..+++++.|++|++||++..+|.
T Consensus 57 yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCc
Confidence 35778888766666666655 44999999999999999977 99999999999 899999999999999999877763
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeec---CCCCCeEEEEEcCCCCEEEEE
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT---DLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~---gH~~~ItsLafSPdg~lLaSg 174 (1630)
...... +.-..++.|+|-+++.+.... .|++||++.-...+..++. +.....+.+.|+|||+.++.+
T Consensus 136 g~l~~~---------~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 136 GLLNLS---------GRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred eEEecC---------CCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 333211 223457889998888888888 9999999875434555543 336678999999999999999
Q ss_pred eCCCeEEEEEcCCCcEEEEEec---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec-cCCCeE
Q 000346 175 YADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV-GSQPIT 250 (1630)
Q Consensus 175 S~DGtIrIWDl~t~~~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g-H~~~Vs 250 (1630)
+..+.+++.|.-+|..+.++.. ...+. ...+|+||++++++|++||+|.+|+++++.. +..+.+ +..++.
T Consensus 206 T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~----~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 206 TNASFIYLLDAFDGTVKSTFSGYPNAGNLP----LSATFTPDSKFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVS 279 (311)
T ss_pred eCCCcEEEEEccCCcEeeeEeeccCCCCcc----eeEEECCCCcEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCcc
Confidence 9999999999999999998885 22222 2789999999999999999999999999986 777777 789999
Q ss_pred EEEEeCCCCEEEEEECCCceEEEEee
Q 000346 251 SVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 251 sVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++.|+|.-..++|+ +..+.+|=..
T Consensus 280 ~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 280 CVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ccccCCceeeeeec--CceEEEEecc
Confidence 99999986666664 5578888543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=190.46 Aligned_cols=249 Identities=17% Similarity=0.156 Sum_probs=176.0
Q ss_pred CcEEEEEcCCCCEEEEEECCe---EEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEE--CCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHPNQALIAVAIGTY---IIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAIL--EDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt---I~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS--~DGtIrVWDl~tge~ 96 (1630)
.++|++||++|+++++|-.|. ++||++.....+..|. |.-.|+|++|+|. +.++++.+ .|..|.+||++.+..
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~-~kyvvSVGsQHDMIVnv~dWr~N~~ 158 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPG-NKYVVSVGSQHDMIVNVNDWRVNSS 158 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCC-CcEEEeeccccceEEEhhhhhhccc
Confidence 789999999999999998755 9999999888888887 4478999999998 88888655 355566665543211
Q ss_pred -----------EEEEcCCCCe-E---------------------------------------------------------
Q 000346 97 -----------FVLHSPEKKM-E--------------------------------------------------------- 107 (1630)
Q Consensus 97 -----------~v~fspdg~~-a--------------------------------------------------------- 107 (1630)
.++|+.+|.+ +
T Consensus 159 ~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait 238 (1080)
T KOG1408|consen 159 GASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAIT 238 (1080)
T ss_pred ccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEe
Confidence 3344444433 2
Q ss_pred ------------------------------------EeecCCe-------------------------------------
Q 000346 108 ------------------------------------SISVDTE------------------------------------- 114 (1630)
Q Consensus 108 ------------------------------------sgs~Dgt------------------------------------- 114 (1630)
++..++.
T Consensus 239 ~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~ 318 (1080)
T KOG1408|consen 239 AQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSE 318 (1080)
T ss_pred cccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccc
Confidence 2222222
Q ss_pred ---------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccc--eeeecCCCCCeEEEEEcCC-----------CCEEE
Q 000346 115 ---------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP--TKIKTDLKKPIVNLACHPR-----------LPVLY 172 (1630)
Q Consensus 115 ---------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~--i~il~gH~~~ItsLafSPd-----------g~lLa 172 (1630)
+.+.|.+...++.+.-+|. .+++||++.-. +. ...+-.|...|.++.--|- ...|.
T Consensus 319 ~~~a~fPD~IA~~Fdet~~klscVYndh-SlYvWDvrD~~-kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~ 396 (1080)
T KOG1408|consen 319 SSPAIFPDAIACQFDETTDKLSCVYNDH-SLYVWDVRDVN-KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFT 396 (1080)
T ss_pred cCcccCCceeEEEecCCCceEEEEEcCc-eEEEEeccccc-cccceeeeeeccceeeeeccccccccCcccccCCcccee
Confidence 3344455666777777888 89999987643 21 2233456777766654430 12588
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEe---------------------c--CCce------ee----cCcccEEEcCCCCEEEE
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQ---------------------L--DNTI------KL----LGAGAFAFHPTLEWLFV 219 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~---------------------~--~~~V------~I----sGi~sVafSPDg~~LaS 219 (1630)
+++.|++||+||+..+.--.++. + ...+ .. .|+.+++.+|+|++|++
T Consensus 397 TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAs 476 (1080)
T KOG1408|consen 397 TCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLAS 476 (1080)
T ss_pred EecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecc
Confidence 99999999999988532111110 0 0000 00 34669999999999999
Q ss_pred EeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC---CCCEEEEEECCCceEEEEee
Q 000346 220 GDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP---MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 220 gS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP---dG~lLaSgS~DGtIrIWDl~ 276 (1630)
|..-|+++|||+.+-+. ...+..|...|.|+.|+. ..++|+++|.|.-|+|+|+.
T Consensus 477 GDr~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 477 GDRGGNLRVYDLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cCccCceEEEEehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 99999999999998764 667889999999999985 35799999999999999986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=188.85 Aligned_cols=234 Identities=14% Similarity=0.180 Sum_probs=194.3
Q ss_pred CcEEEEEcCCCCEEEEEECC-eEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIGT-YIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~G-tI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
.+.++...|..+.+++|+.+ .+.++|..+++.+.++++| ..|+.+.|+++ ...+++++.|..|+||......+...
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~- 298 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTS- 298 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccc-
Confidence 67888888887889999986 7999999999999999977 88999999999 89999999999999999755433111
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecC--CCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD--LKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g--H~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
.-.+......+..+|.|.+++++++|+ +.-+.|++++. +...... ..-.+++.+|||||.+|.+|..|+
T Consensus 299 ------~~~h~~~V~~ls~h~tgeYllsAs~d~-~w~Fsd~~~g~--~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 299 ------SRPHEEPVTGLSLHPTGEYLLSASNDG-TWAFSDISSGS--QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred ------cccccccceeeeeccCCcEEEEecCCc-eEEEEEccCCc--EEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 112233445677899999999999999 99999999984 4433332 334589999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec-cCCCeEEEEEeC
Q 000346 179 LIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV-GSQPITSVAWLP 256 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g-H~~~VssVsfSP 256 (1630)
.|+|||+.++..+..|.+ ...|. .++|+.+|-||+++++|+.|++||++..+. ..++.- ....|.+++|.+
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk-----~i~FsENGY~Lat~add~~V~lwDLRKl~n--~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVK-----AISFSENGYWLATAADDGSVKLWDLRKLKN--FKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred eEEEEEcCCccccccCCCCCCcee-----EEEeccCceEEEEEecCCeEEEEEehhhcc--cceeeccccccceeEEEcC
Confidence 999999999998888887 89999 999999999999999999999999997654 444432 234799999999
Q ss_pred CCCEEEEEECCCceEEEE
Q 000346 257 MLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWD 274 (1630)
.|.+|+.++.|=.|++++
T Consensus 443 SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICK 460 (506)
T ss_pred CCCeEEeecceeEEEEEe
Confidence 999999997776666665
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=202.45 Aligned_cols=233 Identities=16% Similarity=0.158 Sum_probs=195.4
Q ss_pred CCCCEEEEEEC-CeEEEEECCCCc------EEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Q 000346 31 PNQALIAVAIG-TYIIEFDTLTGS------RIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP 102 (1630)
Q Consensus 31 PdG~lLasgs~-GtI~VWDl~tg~------~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fsp 102 (1630)
|.+++|++|+. |.|++|+..... .+.++++| .+|+++....+ ++.|+++|.|.+|++|+...+.. .+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~-~c~-- 110 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNT-FCM-- 110 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcc-hhH--
Confidence 46778999998 779999986332 46778866 99999999988 89999999999999999865531 000
Q ss_pred CCCeEEeecCCeEEEEE-cCCCCEEEEEecCCcEEEEEEcccCCc--------cceeeec-CCCCCeEEEEEcCCCCEEE
Q 000346 103 EKKMESISVDTEVHLAL-TPLQPVVFFGFHRRMSVTVVGTVEGGR--------APTKIKT-DLKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 103 dg~~asgs~Dgtv~L~~-spdg~~LaSgs~Dg~tI~IwDl~sg~~--------~~i~il~-gH~~~ItsLafSPdg~lLa 172 (1630)
..+-.+.|+.-+++. -++...+++|+-|+ .|.+||+.++.. .....+. ++...|++++.++.|..|+
T Consensus 111 --stir~H~DYVkcla~~ak~~~lvaSgGLD~-~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 111 --STIRTHKDYVKCLAYIAKNNELVASGGLDR-KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred --hhhhcccchheeeeecccCceeEEecCCCc-cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 012234666667777 67778999999999 999999987621 1122223 8889999999999999999
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEE
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITS 251 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~Vss 251 (1630)
+|+..+.+++||.++.+.+..+.+ ...|. .+..++||..+++++.||+|++||+...+| +.++..|...|++
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr-----~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC--l~T~~vH~e~VWa 260 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-----VLLVNDDGTRLLSASSDGTIRLWDLGQQRC--LATYIVHKEGVWA 260 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceE-----EEEEcCCCCeEeecCCCceEEeeeccccce--eeeEEeccCceEE
Confidence 999999999999999998888887 88898 999999999999999999999999998886 8899999999999
Q ss_pred EEEeCCCCEEEEEECCCceEEEEeee
Q 000346 252 VAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 252 VsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+..+|+-..+.+|+.||.|..=|++.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999999998877764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-16 Score=177.69 Aligned_cols=240 Identities=14% Similarity=0.111 Sum_probs=173.2
Q ss_pred CcEEEEEcCCCCEEEEE-EC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVA-IG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasg-s~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS~DGtIrVWDl~tge~~v~ 99 (1630)
.+.+++|+|++..++++ .. +.|++||..+++.+..+..+..+..++|+|+ ++.++ +++.|+.|++||+.+++....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPN-GKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCC-CCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 57789999999987544 44 6799999999998887775555678899999 77654 556789999999987654322
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCC
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADG 178 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS-~DG 178 (1630)
+... .....+.++|++.++++++.+...+..||..++ ....... ....+.+++|+|++.+|++++ .++
T Consensus 111 ~~~~--------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 111 IPVG--------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY--EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred eeCC--------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCC--eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCC
Confidence 2210 112447788999999888877536778898766 4433332 233457899999999886554 699
Q ss_pred eEEEEEcCCCcEEEEEec-CCceee--cCcccEEEcCCCCEEEEE-eCCCeEEEEECCCCCceeEEEeeccCCCeEEEEE
Q 000346 179 LIRAYNIHTYAVHYTLQL-DNTIKL--LGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAW 254 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~-~~~V~I--sGi~sVafSPDg~~LaSg-S~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsf 254 (1630)
.|++||+++++....+.. ...+.. .....++|+|++++++++ +.++.+.+||+.+++. +..+ .+...+.+++|
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~--~~~~-~~~~~~~~~~~ 256 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV--LDYL-LVGQRVWQLAF 256 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE--EEEE-EeCCCcceEEE
Confidence 999999999988776652 111100 001268899999986554 4577899999998773 4433 34457899999
Q ss_pred eCCCCEEEEE-ECCCceEEEEeee
Q 000346 255 LPMLRLLVTL-CRDGSLQVWKTRV 277 (1630)
Q Consensus 255 SPdG~lLaSg-S~DGtIrIWDl~~ 277 (1630)
+|+|++|+++ +.+|.|++||+..
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC
Confidence 9999999876 4689999999874
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=190.45 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=196.7
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEE----EE---E-----------cCC-CCEEEEEEeCCCCCEEEEE
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRI----AS---I-----------DIN-SPVVRMAYSPTSGHAVVAI 80 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i----~t---l-----------~~~-~~VtsVafSpd~g~lLaSg 80 (1630)
...|.|++++|+..+.++++. ++|.-|++.+|+.. .. + +.| ..+.+++.++| +.+|++|
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-gkylatg 220 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLATG 220 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-CcEEEec
Confidence 348999999999999999999 88999999888643 11 0 134 67999999999 9999999
Q ss_pred ECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeE
Q 000346 81 LEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 (1630)
Q Consensus 81 S~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~It 160 (1630)
+.|..|.||+.++.+..-+|. ++.+....+.+-..-..+++++.|+ +|++|++... ..+.++.+|...|.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~-------ghr~~V~~L~fr~gt~~lys~s~Dr-svkvw~~~~~--s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFK-------GHRGAVSSLAFRKGTSELYSASADR-SVKVWSIDQL--SYVETLYGHQDGVL 290 (479)
T ss_pred CCCceEEEecCcccchhhccc-------ccccceeeeeeecCccceeeeecCC-ceEEEehhHh--HHHHHHhCCcccee
Confidence 999999999998886533333 5566667777777777899999999 9999999887 78899999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeE
Q 000346 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI 239 (1630)
Q Consensus 161 sLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv 239 (1630)
++.....++.+-+|+.|+++++|++... ..-++.+ ...+. |++|-.+ .++++|+++|.|.+|++.+.++.++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sid-----cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSID-----CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred eechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCee-----eEEEecc-cceeeccCCceEEEeeecccCceeE
Confidence 9999988889999999999999999543 3344444 67887 8888765 5789999999999999998887333
Q ss_pred EEeecc-----------CCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 240 GIIQVG-----------SQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 240 ~tL~gH-----------~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
... .| ..+|++++..|...++++||.+|.|++|.+...
T Consensus 364 ~~~-AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 364 SRL-AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eec-cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 222 22 238999999999999999999999999998643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=194.36 Aligned_cols=247 Identities=16% Similarity=0.248 Sum_probs=192.7
Q ss_pred ccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEE-----
Q 000346 14 VGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIR----- 87 (1630)
Q Consensus 14 vGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIr----- 87 (1630)
.||.+ .|.||+.+|.|.||++|++ |+|+||.+.||+|++++...+.|++|+|+|....-+++...+.++.
T Consensus 397 rGHtg----~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 397 RGHTG----LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eccCC----eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 45666 8999999999999999999 8899999999999999998899999999997333333333333333
Q ss_pred ----------------------------EEECC---CCc---E----------EEEEcCCCCe-EEeecCCe--------
Q 000346 88 ----------------------------SCDFD---TEQ---S----------FVLHSPEKKM-ESISVDTE-------- 114 (1630)
Q Consensus 88 ----------------------------VWDl~---tge---~----------~v~fspdg~~-asgs~Dgt-------- 114 (1630)
.|.-. ..+ | .+.|+..|.+ ++...++.
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 33321 011 1 5677777777 44333221
Q ss_pred -----------------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 115 -----------------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 115 -----------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
.++.|||..++++.++.. .|++||+... ..++.+.....+|.+++.||.|..|+.++.|
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kq--elvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQ--ELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHH--HHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 556678888888887765 4899999876 6666666667899999999999999999999
Q ss_pred CeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC-------CCceeEEEeeccCCC
Q 000346 178 GLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-------ERPSMIGIIQVGSQP 248 (1630)
Q Consensus 178 GtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t-------gk~~lv~tL~gH~~~ 248 (1630)
+.+..+|+.-. ++.+++.+ ...++ +|+||+.-+++++|++||++.|+.-.- ....-+..+++|...
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr-----~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVR-----SVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhh-----hhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 99999998854 56667766 88888 999999999999999999999984221 111235778899866
Q ss_pred ----eEEEEEeCCCCEEEEEECCCceEEE
Q 000346 249 ----ITSVAWLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 249 ----VssVsfSPdG~lLaSgS~DGtIrIW 273 (1630)
|..+.|||...+|++++.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 8899999999999999999999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=189.96 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=188.8
Q ss_pred CCcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
..+.|++.|+||++|++|+.|. |.||+.++.+.++.+.+| +.|.+++|-.. .+.+.+++.|++|++|+++.....-+
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHH
Confidence 3688999999999999999955 999999999999999977 99999999877 78899999999999999865433111
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL 179 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt 179 (1630)
..++.|+...+....-+..+-+|+.|+ ++++|++.. ....++.+|.+.+-|++|-. ..+|++||.||.
T Consensus 282 -------lyGHqd~v~~IdaL~reR~vtVGgrDr-T~rlwKi~e---esqlifrg~~~sidcv~~In-~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 282 -------LYGHQDGVLGIDALSRERCVTVGGRDR-TVRLWKIPE---ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGS 349 (479)
T ss_pred -------HhCCccceeeechhcccceEEeccccc-eeEEEeccc---cceeeeeCCCCCeeeEEEec-ccceeeccCCce
Confidence 225566666666666677777788999 999999944 34667788999999999984 568999999999
Q ss_pred EEEEEcCCCcEEEEEec-----CC--------ceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC--CceeEEEeec
Q 000346 180 IRAYNIHTYAVHYTLQL-----DN--------TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE--RPSMIGIIQV 244 (1630)
Q Consensus 180 IrIWDl~t~~~i~tL~~-----~~--------~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg--k~~lv~tL~g 244 (1630)
|.+|++-..+++++... .. +|+ +++..|...++++|+.+|.|++|-+.++ ...++..+.
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-----sla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls- 423 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-----SLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS- 423 (479)
T ss_pred EEEeeecccCceeEeeccccccCCcccccccccee-----eeEecccCceEEecCCCCceEEEEecCCccccceeeecc-
Confidence 99999999888887762 12 666 9999999999999999999999999887 222344444
Q ss_pred cCCCeEEEEEeCCCCEEEEE-ECCCceEEEEee
Q 000346 245 GSQPITSVAWLPMLRLLVTL-CRDGSLQVWKTR 276 (1630)
Q Consensus 245 H~~~VssVsfSPdG~lLaSg-S~DGtIrIWDl~ 276 (1630)
-.+.|++++|+++|+.|++| +....+--|-..
T Consensus 424 ~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 35789999999999965554 444455445444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=181.73 Aligned_cols=245 Identities=17% Similarity=0.240 Sum_probs=193.7
Q ss_pred cEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----
Q 000346 24 PHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1630)
Q Consensus 24 V~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----- 96 (1630)
-.|+.|++.|.+||+|+. |.|.|||+.|...-+.+..| .+|.+++||++ |+.|+++|.|..|.+||+..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEEE
Confidence 679999999999999999 88999999999988888866 99999999999 99999999999999999998876
Q ss_pred ------EEEEcCCCCe--EE---------------------eecCCe-----EEEEEcCCCCEEEEEecCCcEEEEEEcc
Q 000346 97 ------FVLHSPEKKM--ES---------------------ISVDTE-----VHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1630)
Q Consensus 97 ------~v~fspdg~~--as---------------------gs~Dgt-----v~L~~spdg~~LaSgs~Dg~tI~IwDl~ 142 (1630)
...|+|.... +. ...|+. .+..+++.|.++++|...| .+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG-kllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG-KLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc-eEEEEecc
Confidence 3344444332 11 111111 2234667789999999999 99999998
Q ss_pred cCCccceeeecCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------cEEEEEec---CCceeecCcccEE
Q 000346 143 EGGRAPTKIKTDLK-KPIVNLACHPRLPVLYVAYADGLIRAYNIHTY---------AVHYTLQL---DNTIKLLGAGAFA 209 (1630)
Q Consensus 143 sg~~~~i~il~gH~-~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~---------~~i~tL~~---~~~V~IsGi~sVa 209 (1630)
+- .|+..++-.. ..|.++.++..|+.|+.-+.|+.||.|+++.- +..+.++. .-.=+ +++
T Consensus 184 t~--e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk-----~cc 256 (405)
T KOG1273|consen 184 TL--ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK-----KCC 256 (405)
T ss_pred hh--eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh-----hee
Confidence 87 7777665544 78899999999999999999999999998721 11122221 11123 789
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCCceeEEEeeccC-CCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 210 FHPTLEWLFVGDR-RGTLLAWDVSIERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 210 fSPDg~~LaSgS~-DGtVrVWDl~tgk~~lv~tL~gH~-~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
|+.||.|++.++. -..++||....|. +++.+.|.. .....+.|+|-...|++. ..|+|+||......+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcc--eeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 9999999988874 5679999999998 488888876 567889999998888887 789999998765443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=196.35 Aligned_cols=240 Identities=15% Similarity=0.165 Sum_probs=188.5
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeC-C-CCCEEEEEECCCeEEEEECCCCcE
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSP-T-SGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSp-d-~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
.+.++|++.||+|++||+|.. |+++||++..-+....++ |+..|.|+.|+. . +..+|++++.|..|+|||+...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-- 536 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-- 536 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--
Confidence 357999999999999999999 889999999988888888 559999999983 2 3578999999999999998544
Q ss_pred EEEEcCCCCeEEeecCCe--EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCC-----CCCeEEEEEcCCCC
Q 000346 97 FVLHSPEKKMESISVDTE--VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL-----KKPIVNLACHPRLP 169 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgt--v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH-----~~~ItsLafSPdg~ 169 (1630)
|.+.+.. .++...+ ++++-...+..+++++.|. .|.+--.++. .....+..| +..++.++..|..+
T Consensus 537 ---y~l~qtl-d~HSssITsvKFa~~gln~~MiscGADk-simFr~~qk~--~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 537 ---YDLVQTL-DGHSSSITSVKFACNGLNRKMISCGADK-SIMFRVNQKA--SSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred ---cchhhhh-cccccceeEEEEeecCCceEEEeccCch-hhheehhccc--cCceeccccccccccceEEEeeeCCCcc
Confidence 2222211 0111112 3333333335677777777 4433222222 112222222 45688999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEec----CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeecc
Q 000346 170 VLYVAYADGLIRAYNIHTYAVHYTLQL----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 170 lLaSgS~DGtIrIWDl~t~~~i~tL~~----~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH 245 (1630)
++++++.|..|+|||+.+++..+.|++ ++... .+...|.|.||++...|.++.++|+.+++| +..+.||
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-----Kv~lDPSgiY~atScsdktl~~~Df~sgEc--vA~m~GH 682 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-----KVILDPSGIYLATSCSDKTLCFVDFVSGEC--VAQMTGH 682 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccccCCCceE-----EEEECCCccEEEEeecCCceEEEEeccchh--hhhhcCc
Confidence 999999999999999999999999986 34444 789999999999999999999999999996 8899999
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 246 SQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 246 ~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
...|+.+.|.+|-+.|++.+.||.|.||.+.
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999999999999999976
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=182.39 Aligned_cols=287 Identities=14% Similarity=0.175 Sum_probs=216.5
Q ss_pred eeeeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECC--CCcEEEEEcCC-CCEEEEEEeCCCCC-EEEEEECCC
Q 000346 10 DLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTL--TGSRIASIDIN-SPVVRMAYSPTSGH-AVVAILEDC 84 (1630)
Q Consensus 10 elqhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~--tg~~i~tl~~~-~~VtsVafSpd~g~-lLaSgS~DG 84 (1630)
.+++...+......|+||.|||..++|++++. ++++||.++ +...++.+... .+|.+.+|.|+ |+ .+++++...
T Consensus 202 rlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrk 280 (514)
T KOG2055|consen 202 RLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRK 280 (514)
T ss_pred eecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC-CceEEEecccce
Confidence 33444344333457999999999999999998 779999886 34456666644 89999999999 66 899999999
Q ss_pred eEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEE
Q 000346 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 85 tIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLaf 164 (1630)
.++.||+.+.+..-.-.+.|.. .........++++++|+..+..+ .|.+....++ ..+..+. -.+.|..++|
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e----~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~--eli~s~K-ieG~v~~~~f 352 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVE----EKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTK--ELITSFK-IEGVVSDFTF 352 (514)
T ss_pred EEEEeeccccccccccCCCCcc----cchhheeEecCCCCeEEEcccCc-eEEeehhhhh--hhhheee-eccEEeeEEE
Confidence 9999999887652222222211 11234566789999999999999 9999988887 4454444 2678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC----CceeEE
Q 000346 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE----RPSMIG 240 (1630)
Q Consensus 165 SPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg----k~~lv~ 240 (1630)
+.|++.|++++.+|.|.+||++...+++.+..++.|. -++++.++++.||++|++.|.|.|||..+. .+..+.
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH---GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc---eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 9999999999999999999999999999998765553 236788899999999999999999997652 333366
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEEC--CCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCC
Q 000346 241 IIQVGSQPITSVAWLPMLRLLVTLCR--DGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPR 318 (1630)
Q Consensus 241 tL~gH~~~VssVsfSPdG~lLaSgS~--DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~r 318 (1630)
++..-...|+++.|++|+++||.+|. +..+|+-++..... ..||-.+ .-++.+
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV------FsNfP~~-------------------n~~vg~ 484 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV------FSNFPTS-------------------NTKVGH 484 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee------eccCCCC-------------------CCcccc
Confidence 66666788999999999999988774 55788877652221 1122111 134778
Q ss_pred eEEEEeCCCCCceeE
Q 000346 319 VRALEVHPRLNLAVL 333 (1630)
Q Consensus 319 i~~v~~HPk~Nl~Al 333 (1630)
+++++|.|+.-++|+
T Consensus 485 vtc~aFSP~sG~lAv 499 (514)
T KOG2055|consen 485 VTCMAFSPNSGYLAV 499 (514)
T ss_pred eEEEEecCCCceEEe
Confidence 999999999888884
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=177.24 Aligned_cols=241 Identities=14% Similarity=0.117 Sum_probs=176.2
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc--EEEEEc--CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS--RIASID--IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~--~i~tl~--~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
.|+|++|+.||+.|++++. +.|++|++..-. ..+.+. .. +..+.+.|.||....++++-...++++|.....+-
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 8999999999999999999 669999987432 122222 11 46788999999666777777777888887632211
Q ss_pred ------------------------EEEEcCCCCe-EEeecCCeEEEEE---------------------cCCCCEEEEEe
Q 000346 97 ------------------------FVLHSPEKKM-ESISVDTEVHLAL---------------------TPLQPVVFFGF 130 (1630)
Q Consensus 97 ------------------------~v~fspdg~~-asgs~Dgtv~L~~---------------------spdg~~LaSgs 130 (1630)
.+.....+.+ .+++.|..+.+|. +|+|..+++++
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEec
Confidence 1222223344 5666666666663 78999998888
Q ss_pred cCCcEEEEEEcccCC------ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-------CcEEEEEe--
Q 000346 131 HRRMSVTVVGTVEGG------RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT-------YAVHYTLQ-- 195 (1630)
Q Consensus 131 ~Dg~tI~IwDl~sg~------~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t-------~~~i~tL~-- 195 (1630)
-.- .|++|...-+. -.....+.+|...|..++|++++..+++.|.||++||||++- .+.+++..
T Consensus 248 FTp-DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 248 FTP-DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred CCC-CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 877 88999874321 023345689999999999999999999999999999999762 12222221
Q ss_pred -c---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEe-eccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 196 -L---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII-QVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 196 -~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL-~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
+ ..++ .+..+|.|+.|+.+. ..+++++..++++. ...+ ..|...|++++|+++|++++|++ |..+
T Consensus 327 l~aag~~p~------RL~lsP~g~~lA~s~-gs~l~~~~se~g~~--~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 327 LHAAGSEPV------RLELSPSGDSLAVSF-GSDLKVFASEDGKD--YPELEDIHSTTISSISYSSDGKYIATCG-DRYV 396 (420)
T ss_pred hhhcCCCce------EEEeCCCCcEEEeec-CCceEEEEcccCcc--chhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence 1 2333 799999999887765 67899999888753 2222 46889999999999999999987 7788
Q ss_pred EEEE
Q 000346 271 QVWK 274 (1630)
Q Consensus 271 rIWD 274 (1630)
++..
T Consensus 397 rv~~ 400 (420)
T KOG2096|consen 397 RVIR 400 (420)
T ss_pred eeec
Confidence 7775
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=196.24 Aligned_cols=245 Identities=15% Similarity=0.121 Sum_probs=201.2
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCC--cEEEEEc-CCCCEEEEEE-eCCCCCEEEEEECCCeEEEEECCCCcE-
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTG--SRIASID-INSPVVRMAY-SPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg--~~i~tl~-~~~~VtsVaf-Spd~g~lLaSgS~DGtIrVWDl~tge~- 96 (1630)
-|..+....+++.|++++.++ |++|+...+ -+..++. |...|.|+++ -++ ...+|+||-|+.|.+||++++..
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchh
Confidence 466666677888999999955 999999877 6777887 5599999999 555 88999999999999999998833
Q ss_pred -EEEEcC--CCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 97 -FVLHSP--EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 97 -~v~fsp--dg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
...+.. .....+|..+....++..+.+..+++|+..+ .+++||-++. +.+..+.+|+..|..+..++||..+++
T Consensus 154 l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt~--~kimkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 154 LVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRTC--KKIMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred hhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-ceEEeccccc--cceeeeeccccceEEEEEcCCCCeEee
Confidence 222221 1111447778889999999999999999999 9999999998 666777799999999999999999999
Q ss_pred EeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEE
Q 000346 174 AYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSV 252 (1630)
Q Consensus 174 gS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssV 252 (1630)
+|.||+|++||+...+|+.++.. ...|+ ++..+|+-.++++|++||.|..=|+++... +.. +.....+|..+
T Consensus 231 ~sSDgtIrlWdLgqQrCl~T~~vH~e~VW-----aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~-~tl-ick~daPv~~l 303 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCLATYIVHKEGVW-----ALQSSPSFTHVYSGGRDGNIYRTDLRNPAK-STL-ICKEDAPVLKL 303 (735)
T ss_pred cCCCceEEeeeccccceeeeEEeccCceE-----EEeeCCCcceEEecCCCCcEEecccCCchh-heE-eecCCCchhhh
Confidence 99999999999999999999885 77798 999999999999999999999999998532 122 33345678888
Q ss_pred EEeCCCCEEEEEECCCceEEEEeeee
Q 000346 253 AWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 253 sfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
..+.+.+-+-+++.|+.|+-|.....
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred hhccccCCceeeeccccceecCCccc
Confidence 88765555577889999999987643
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=187.27 Aligned_cols=253 Identities=17% Similarity=0.252 Sum_probs=185.3
Q ss_pred EcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE----EEcCCCCeEEeecCCeEEEEEcCC-CCEEEEEecC
Q 000346 58 IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV----LHSPEKKMESISVDTEVHLALTPL-QPVVFFGFHR 132 (1630)
Q Consensus 58 l~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v----~fspdg~~asgs~Dgtv~L~~spd-g~~LaSgs~D 132 (1630)
+.|.+.|+.+++-|++...+++.+..+.|.|||+.+..... .+.|+-+ +.++.+.-..+.|++. .-.+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceE-EEeecccccccccccccceeEeeccCC
Confidence 33669999999999977888889999999999986543211 2233322 3444442233444444 4589999999
Q ss_pred CcEEEEEEcccCCc-----cceeeecCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC--CcEEEEEec-CCceeec
Q 000346 133 RMSVTVVGTVEGGR-----APTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHT--YAVHYTLQL-DNTIKLL 203 (1630)
Q Consensus 133 g~tI~IwDl~sg~~-----~~i~il~gH~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t--~~~i~tL~~-~~~V~Is 203 (1630)
+ +|.+||+..... .+...+.+|+..|..++||+ +..+|++++.|+.+.|||+|+ .++...... ...|+
T Consensus 200 ~-~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn-- 276 (422)
T KOG0264|consen 200 H-TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN-- 276 (422)
T ss_pred C-cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee--
Confidence 9 999999976531 35677899999999999999 566899999999999999994 445555554 88899
Q ss_pred CcccEEEcC-CCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeeeecCC
Q 000346 204 GAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVIINP 281 (1630)
Q Consensus 204 Gi~sVafSP-Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~~~~p 281 (1630)
|++|+| ++..||+|+.|++|.+||+++-.. .+.++.+|...|.+|.|+|. ...|+|++.|+.+.|||+......
T Consensus 277 ---~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 277 ---CVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred ---EEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999999 667888999999999999998543 48899999999999999996 458899999999999999854431
Q ss_pred CCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCcee
Q 000346 282 NRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 332 (1630)
Q Consensus 282 nk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~A 332 (1630)
.. +..+.- ..+..|-..+| ...++.++.|+|..+.+.
T Consensus 353 q~-~eda~d---------gppEllF~HgG----H~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 353 QS-PEDAED---------GPPELLFIHGG----HTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred cC-hhhhcc---------CCcceeEEecC----cccccccccCCCCCCeEE
Confidence 11 000000 01112222232 234577889999888755
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=174.38 Aligned_cols=243 Identities=15% Similarity=0.203 Sum_probs=187.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCC---cEEEEEcCC-CCEEEEEEe-CCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTG---SRIASIDIN-SPVVRMAYS-PTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg---~~i~tl~~~-~~VtsVafS-pd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
-|+.+...--|.+||+++. ++|+|+..++. ..+.++.+| +||+.++|. |.-|.+|++++.||.|.||..++++-
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence 6777777777999999999 66999999754 457788866 999999996 54599999999999999999887743
Q ss_pred EEEEcCCCCeEEeecC--CeEEEEEcCCCCEEEEEecCCcEEEEEEcccC-CccceeeecCCCCCeEEEEEcCC---C--
Q 000346 97 FVLHSPEKKMESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG-GRAPTKIKTDLKKPIVNLACHPR---L-- 168 (1630)
Q Consensus 97 ~v~fspdg~~asgs~D--gtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg-~~~~i~il~gH~~~ItsLafSPd---g-- 168 (1630)
+..... +.+.. ..+..+.+.-|-.|++++.|+ .|.+.+.... .....++...|.-.|++++|.|- |
T Consensus 93 ----~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG-~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 93 ----TKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDG-KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred ----hhhhhh-hhhcccceeecccccccceEEEEeeCCC-cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 211111 01111 223334455567899999999 9999988765 33556777899999999999985 4
Q ss_pred ---------CEEEEEeCCCeEEEEEcCCC--cEEEEEec-CCceeecCcccEEEcCCC----CEEEEEeCCCeEEEEECC
Q 000346 169 ---------PVLYVAYADGLIRAYNIHTY--AVHYTLQL-DNTIKLLGAGAFAFHPTL----EWLFVGDRRGTLLAWDVS 232 (1630)
Q Consensus 169 ---------~lLaSgS~DGtIrIWDl~t~--~~i~tL~~-~~~V~IsGi~sVafSPDg----~~LaSgS~DGtVrVWDl~ 232 (1630)
+.|++|+.|..|+||+..++ ..-++|.+ .+.|+ .++|.|.- .+|++++.||+|.||...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR-----DVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR-----DVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh-----hhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 46999999999999998875 33445665 88998 99999943 589999999999999766
Q ss_pred CC-CceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 233 IE-RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 233 tg-k~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.. +++-...+......+++++||..|++|+.++.|+.|.+|.-+
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 32 222233444556789999999999999999999999999865
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=173.90 Aligned_cols=235 Identities=18% Similarity=0.207 Sum_probs=172.8
Q ss_pred CCcEEEEEcCCC-CEEEEEEC-CeEEEEECCC-CcEEEEEc--CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 22 LQPHEAAFHPNQ-ALIAVAIG-TYIIEFDTLT-GSRIASID--INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG-~lLasgs~-GtI~VWDl~t-g~~i~tl~--~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
..|.+++|||.. .++++++. ++|++|+++. |..+-... +.++|.+++|+.+ |..+++|+.|+.+++||+.+++.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-CceEEeeccCCceEEEEccCCCe
Confidence 389999999944 45545555 7799999986 45544333 5599999999999 99999999999999999999876
Q ss_pred -----------EEEEcCCCCe---EEeecCCeEEEEEcCC-------------------CCEEEEEecCCcEEEEEEccc
Q 000346 97 -----------FVLHSPEKKM---ESISVDTEVHLALTPL-------------------QPVVFFGFHRRMSVTVVGTVE 143 (1630)
Q Consensus 97 -----------~v~fspdg~~---asgs~Dgtv~L~~spd-------------------g~~LaSgs~Dg~tI~IwDl~s 143 (1630)
++.|-+...+ ++|+.|.+++.|.... .+.++.+..++ .|.+|+++.
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r-~i~vynL~n 185 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER-HIAVYNLEN 185 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC-cEEEEEcCC
Confidence 3334333332 6666677666665322 13445555566 666777655
Q ss_pred CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--cEEEEEec-C---------CceeecCcccEEEc
Q 000346 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--AVHYTLQL-D---------NTIKLLGAGAFAFH 211 (1630)
Q Consensus 144 g~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~--~~i~tL~~-~---------~~V~IsGi~sVafS 211 (1630)
+......+....+..++|+++.+|....+.|+-+|.+-|..+..+ +..++|+. . ..|+ +++|+
T Consensus 186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN-----si~Fh 260 (347)
T KOG0647|consen 186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN-----SIAFH 260 (347)
T ss_pred CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec-----ceEee
Confidence 521111222233556899999999888899999999999998876 44455543 1 1344 89999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEE
Q 000346 212 PTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 212 PDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS 265 (1630)
|....|++.+.||++.+||-..... +.+.+.|..+|++.+|+.+|.+++-+.
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~k--Lk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTK--LKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cccceEEEecCCceEEEecchhhhh--hhccCcCCCccceeEecCCCCEEEEEe
Confidence 9989999999999999999886654 667778999999999999999887654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=177.49 Aligned_cols=247 Identities=14% Similarity=0.131 Sum_probs=199.3
Q ss_pred eeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEEC------CC------------------------------C--
Q 000346 12 RHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDT------LT------------------------------G-- 52 (1630)
Q Consensus 12 qhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl------~t------------------------------g-- 52 (1630)
+..||.+ .|+||.||+.+.++++++. ++..||.. .. +
T Consensus 185 ~Y~GH~G----SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 185 TYTGHTG----SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred eeccccc----ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 3456666 8999999999999999998 66889862 10 0
Q ss_pred --cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEE
Q 000346 53 --SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFG 129 (1630)
Q Consensus 53 --~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSg 129 (1630)
.++..+.+| +.|.+..|... |+.+++++.|.+-.+||+++++..-... |+...-.++..+|...++++.
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~Lt-------GHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILT-------GHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceecccc-------CcchhccccccCCcceEEEEe
Confidence 123445566 88899999988 9999999999999999999997633332 334344566789999999999
Q ss_pred ecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-cEEEEEecCCceeecCcccE
Q 000346 130 FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAF 208 (1630)
Q Consensus 130 s~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~~~~V~IsGi~sV 208 (1630)
+.|. +.++||++..- ..+..+.+|...|+++.|.-+ ..+++|++|.+|+|||+++. ..+.++..+..++ .+
T Consensus 333 SrDt-TFRLWDFReaI-~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N-----Rv 404 (481)
T KOG0300|consen 333 SRDT-TFRLWDFREAI-QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN-----RV 404 (481)
T ss_pred ccCc-eeEeccchhhc-ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccc-----ee
Confidence 9999 99999999664 778899999999999999965 46889999999999999976 4677777788888 99
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCce--eEEEeeccCCCeEEEEEeCCC--CEEEEEECCCceEEEEeeee
Q 000346 209 AFHPTLEWLFVGDRRGTLLAWDVSIERPS--MIGIIQVGSQPITSVAWLPML--RLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 209 afSPDg~~LaSgS~DGtVrVWDl~tgk~~--lv~tL~gH~~~VssVsfSPdG--~lLaSgS~DGtIrIWDl~~~ 278 (1630)
+.+..++.|+.--+++.|++||+.-.+.. ....-++|..-|+|++|..+- .-|++++.|..+.=|++++.
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999999999999999999999854310 022456899999999997653 35789999999999998754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-16 Score=186.84 Aligned_cols=234 Identities=15% Similarity=0.203 Sum_probs=188.6
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcC-CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~-~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fs 101 (1630)
...-++|+ ..+.|++|....|.+|+..++........ ...|+++.|+++ |.+|++|..+|.|.|||..+.+..-.+.
T Consensus 179 Y~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hhhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhcccccccc
Confidence 34457888 56789999988999999999997777664 589999999999 9999999999999999987655422221
Q ss_pred CCCCeEEe-ecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 102 PEKKMESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 102 pdg~~asg-s~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
+ +....-.+.+. ...+.+|+.++ .|..+|++... ....++.+|...|..+.|++|+.++|+|+.|+.+
T Consensus 257 -------~~h~~rvg~laW~--~~~lssGsr~~-~I~~~dvR~~~-~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 257 -------GSHASRVGSLAWN--SSVLSSGSRDG-KILNHDVRISQ-HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred -------CCcCceeEEEecc--CceEEEecCCC-cEEEEEEecch-hhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence 1 12222334444 66788999999 99999999874 4444688999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEec-CCceeecCcccEEEcC-CCCEEEEEe--CCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC
Q 000346 181 RAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGD--RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS--~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP 256 (1630)
.|||.........+.. ...|. .++|+| ....||+|+ .|+.|++||..++.. +..+.. .+.|.++.|++
T Consensus 326 ~Iwd~~~~~p~~~~~~H~aAVK-----A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--i~~vdt-gsQVcsL~Wsk 397 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHTAAVK-----ALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--IDSVDT-GSQVCSLIWSK 397 (484)
T ss_pred EeccCCCccccEEEeccceeee-----EeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--eccccc-CCceeeEEEcC
Confidence 9999987777777765 89999 999999 667888876 499999999999885 555543 57899999999
Q ss_pred CCCEEEEEE--CCCceEEEEeee
Q 000346 257 MLRLLVTLC--RDGSLQVWKTRV 277 (1630)
Q Consensus 257 dG~lLaSgS--~DGtIrIWDl~~ 277 (1630)
..+-|+++. .++.|.||+...
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccc
Confidence 887666544 466899999864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=202.42 Aligned_cols=228 Identities=11% Similarity=0.116 Sum_probs=199.1
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
.+.|+..-..++.+++|+.+. +-+|.....-.+..+.+| .+|.++.|++. ..+|++|+.||+|++||++..+..-
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDleeAk~vr-- 106 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLEEAKIVR-- 106 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc-hhhhcccccCCceeeeehhhhhhhh--
Confidence 677877766788888888866 779999887777788855 99999999999 8999999999999999998664311
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
.++|+....+.+.|+|-+.+.++|+.|. .+++||.+.. -|...+.+|...|..+.|+|+|+++++++.|.++
T Consensus 107 -----tLtgh~~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~--Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 107 -----TLTGHLLNITSVDFHPYGEFFASGSTDT-DLKIWDIRKK--GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred -----hhhccccCcceeeeccceEEeccccccc-cceehhhhcc--CceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 1446677778899999999999999999 9999999977 6999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC
Q 000346 181 RAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR 259 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~ 259 (1630)
+|||...|+....|.. +..+. ++.|||..-.+++|+.|++|++||+++.+ ++.........|.+..|+|++.
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~-----sle~hp~e~Lla~Gs~d~tv~f~dletfe--~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQ-----SLEFHPLEVLLAPGSSDRTVRFWDLETFE--VISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred eeeccccccccccccccccccc-----ccccCchhhhhccCCCCceeeeeccceeE--EeeccCCccCCceeeeecCCce
Confidence 9999999999999995 78888 99999999999999999999999999876 3666666678899999999999
Q ss_pred EEEEEECCC
Q 000346 260 LLVTLCRDG 268 (1630)
Q Consensus 260 lLaSgS~DG 268 (1630)
.+.+|..+.
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 998877553
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=180.06 Aligned_cols=212 Identities=17% Similarity=0.285 Sum_probs=168.3
Q ss_pred EEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc---E--------EEEEcCCCCeEEeecCCeEEEEEcCCCC
Q 000346 57 SID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ---S--------FVLHSPEKKMESISVDTEVHLALTPLQP 124 (1630)
Q Consensus 57 tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge---~--------~v~fspdg~~asgs~Dgtv~L~~spdg~ 124 (1630)
.+. |.+++++.+|++| |.++++|+.|.+|++.|++..- . .-..+|--+.+--+.|....+.|+|...
T Consensus 107 ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 344 5599999999999 9999999999999999986210 0 1111221111223445567889999999
Q ss_pred EEEEEecCCcEEEEEEcccCC-ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEe----cCCc
Q 000346 125 VVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ----LDNT 199 (1630)
Q Consensus 125 ~LaSgs~Dg~tI~IwDl~sg~-~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~----~~~~ 199 (1630)
+|++++.|+ +|+++|+.+.. ++..+.+. ...+|.++.|||.|.+|++|....++++||+.+.+|...-. +...
T Consensus 186 ILiS~srD~-tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDN-TVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCC-eEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999 99999997652 12223333 35789999999999999999999999999999988865543 2556
Q ss_pred eeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEee-ccC-CCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 200 IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ-VGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 200 V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~-gH~-~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
|+ ++.|++.+++.++++.||.|++||--+++| +.++. .|. ..|.+..|..+|++|.+++.|..|++|.+.+
T Consensus 264 i~-----~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 264 IT-----QVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred ee-----EEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 66 999999999999999999999999888886 55543 454 6799999999999999999999999999875
Q ss_pred e
Q 000346 278 I 278 (1630)
Q Consensus 278 ~ 278 (1630)
.
T Consensus 337 ~ 337 (430)
T KOG0640|consen 337 G 337 (430)
T ss_pred C
Confidence 3
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=173.23 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=204.3
Q ss_pred CcEEEEEcC---CCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 23 QPHEAAFHP---NQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 23 rV~~LaFSP---dG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
.|..++||| +|-+|++++. +.-.+-+-+||..+.++++| +.|++.+.+.+ ...-++++.|.+-++||.-+|...
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhh
Confidence 688999985 7888999998 66777788999999999977 99999999988 888899999999999999887654
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
..|.. ..-...+.++.+.+.|++|+.+. .++++|+.... .+...+.+|.+.|..+.|....+.|++++.|
T Consensus 95 hsf~h--------khivk~~af~~ds~~lltgg~ek-llrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 95 HSFEH--------KHIVKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhhhh--------hheeeeEEecccchhhhccchHH-HhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 43331 11224578889999999999999 89999998876 7888899999999999999988899999999
Q ss_pred CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 178 GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 178 GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
++||+||.+++..++++.....|+ ++.++++|++|.++ ..+.|++||..+-.. ++.+.. ...|.+.+.+|+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~Vt-----SlEvs~dG~ilTia-~gssV~Fwdaksf~~--lKs~k~-P~nV~SASL~P~ 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVT-----SLEVSQDGRILTIA-YGSSVKFWDAKSFGL--LKSYKM-PCNVESASLHPK 235 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCc-----ceeeccCCCEEEEe-cCceeEEeccccccc--eeeccC-ccccccccccCC
Confidence 999999999999999999988998 99999999977655 478899999998763 554443 467999999999
Q ss_pred CCEEEEEECCCceEEEEeeeecC
Q 000346 258 LRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
..++++|++|+.++.||..+...
T Consensus 236 k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred CceEEecCcceEEEEEeccCCce
Confidence 99999999999999999986654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=188.96 Aligned_cols=269 Identities=17% Similarity=0.195 Sum_probs=202.9
Q ss_pred EEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----------EEEEcCCCCe--EEeecCCeEEEEE
Q 000346 54 RIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----------FVLHSPEKKM--ESISVDTEVHLAL 119 (1630)
Q Consensus 54 ~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-----------~v~fspdg~~--asgs~Dgtv~L~~ 119 (1630)
+-..+.+| +.|++++..|. |.||++|++||+||||.+.|+.| +++|+|.+.. +....+..+.+..
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 33445566 99999999998 99999999999999999999998 8889998877 3333333322222
Q ss_pred cCCC---------CEEEEE----ecCCcEEEEEEcccCC--ccceeeecCCCCCeEEEEEcCCCCEEEEEeCC---CeEE
Q 000346 120 TPLQ---------PVVFFG----FHRRMSVTVVGTVEGG--RAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD---GLIR 181 (1630)
Q Consensus 120 spdg---------~~LaSg----s~Dg~tI~IwDl~sg~--~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D---GtIr 181 (1630)
.--| ..++++ ..+. .+..|.-.... ..-+.+.-.|...|..+.||.+|.+|++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~-~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDA-AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcc-cceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 1111 223333 1234 56677654211 02244556689999999999999999998754 5788
Q ss_pred EEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCE
Q 000346 182 AYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL 260 (1630)
Q Consensus 182 IWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~l 260 (1630)
|+++.......-|.. .+.+. ++.|||...+|++++ ...|+|||+...+ +++.+.....+|++++.||.|..
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq-----~v~FHPs~p~lfVaT-q~~vRiYdL~kqe--lvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQ-----RVKFHPSKPYLFVAT-QRSVRIYDLSKQE--LVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred EEecccccccCchhhcCCcee-----EEEecCCCceEEEEe-ccceEEEehhHHH--HHHHHhcCCeeeeeeeecCCCCe
Confidence 999887776666655 66777 999999999999988 5789999999754 46666667789999999999999
Q ss_pred EEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCceeE-------
Q 000346 261 LVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVL------- 333 (1630)
Q Consensus 261 LaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Al------- 333 (1630)
|+.|+.|+.+..+|+.....|.+. ..+....++.|++|++++|++.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~---------------------------lr~H~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKT---------------------------LRLHEKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHH---------------------------hhhhhhhhhhhhhccccceeeeecCCCcE
Confidence 999999999999998754432111 1133456788999999999876
Q ss_pred -eeccccCCCcccchhhhhhhccccceehhhcccCCc
Q 000346 334 -LFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSS 369 (1630)
Q Consensus 334 -vfa~~~~~D~~kN~~~~~~egr~ql~~vlq~~r~~~ 369 (1630)
+|+.+++.|-.+|. ++++|+..+++.
T Consensus 675 ~Vfhg~VY~Dl~qnp----------liVPlK~L~gH~ 701 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNP----------LIVPLKRLRGHE 701 (733)
T ss_pred EEEeeeeehhhhcCC----------ceEeeeeccCce
Confidence 88888999999999 899999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=170.41 Aligned_cols=234 Identities=18% Similarity=0.163 Sum_probs=190.9
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
..|.+|.|+|.+..|++++. |.+++||+........+++..++.+++|.++ ..+++|+.||.|+.+|+.++..
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcceeec
Confidence 47999999998888877777 8899999999988888888999999999876 7899999999999999998765
Q ss_pred -------EEEEcCCCCe-EEeecCCeEEEEEcC-------------------CCCEEEEEecCCcEEEEEEcccCCccce
Q 000346 97 -------FVLHSPEKKM-ESISVDTEVHLALTP-------------------LQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1630)
Q Consensus 97 -------~v~fspdg~~-asgs~Dgtv~L~~sp-------------------dg~~LaSgs~Dg~tI~IwDl~sg~~~~i 149 (1630)
++.+.+.... ++++.|..+.+|... .++.|+.|+.++ .|.+||+++.. ...
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r-~v~iyDLRn~~-~~~ 169 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR-KVLIYDLRNLD-EPF 169 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc-eEEEEEccccc-chh
Confidence 7777765555 899999999988743 356788889999 99999998874 333
Q ss_pred eee-cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----cEEEEEec----------CCceeecCcccEEEcCCC
Q 000346 150 KIK-TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY----AVHYTLQL----------DNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 150 ~il-~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~----~~i~tL~~----------~~~V~IsGi~sVafSPDg 214 (1630)
+.. ...+-.++|+++-|++.=++++|-||.|.+=.++.. ...+.|+. -.+|+ +++|||-.
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN-----ai~Fhp~~ 244 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN-----AIAFHPIH 244 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec-----eeEecccc
Confidence 222 334567899999998888899999999988766654 33333431 13455 99999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEEC
Q 000346 215 EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 215 ~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~ 266 (1630)
..|+||+.||.|.+||+.+.+. +..+......|.+++|+.+|..||.++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999998775 6666666678999999999999999873
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=185.48 Aligned_cols=233 Identities=14% Similarity=0.126 Sum_probs=194.1
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC---CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN---SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~---~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v 98 (1630)
-|+++..+|||+.|++|++ .++.|||+.........+.. -.+.+++.+|| .+..+++..||.|.|||+.+....-
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeee
Confidence 6889999999999999999 77999999876654444422 45789999999 9999999999999999997665544
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
.|. |+.||.-+|..+++|..|.+|+-|. +|++||++++. + ... ......|.++.+.|.+.++++|-.++
T Consensus 546 qfq-------GhtDGascIdis~dGtklWTGGlDn-tvRcWDlregr-q-lqq-hdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 546 QFQ-------GHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLREGR-Q-LQQ-HDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred ccc-------CCCCCceeEEecCCCceeecCCCcc-ceeehhhhhhh-h-hhh-hhhhhhheecccCCCccceeeecccC
Confidence 444 7789999999999999999999999 99999999883 2 221 12367899999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCC
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 258 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG 258 (1630)
.+.|.........+.-.++.-|. ++.|.+.|+|+++.+.|+.+..|...-+.. +.... ..+.|.++..+.|.
T Consensus 615 ~vevlh~skp~kyqlhlheScVL-----SlKFa~cGkwfvStGkDnlLnawrtPyGas--iFqsk-E~SsVlsCDIS~dd 686 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVL-----SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSK-ESSSVLSCDISFDD 686 (705)
T ss_pred cEEEEecCCccceeecccccEEE-----EEEecccCceeeecCchhhhhhccCccccc--eeecc-ccCcceeeeeccCc
Confidence 99998876555544444577777 999999999999999999999999887764 43333 36789999999999
Q ss_pred CEEEEEECCCceEEEEe
Q 000346 259 RLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 259 ~lLaSgS~DGtIrIWDl 275 (1630)
++|+|||.|....||.+
T Consensus 687 kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 687 KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eEEEecCCCcceEEEEE
Confidence 99999999998888875
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=172.63 Aligned_cols=236 Identities=12% Similarity=0.152 Sum_probs=176.9
Q ss_pred CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-EEEEcCCCCeEEeecCCeEEEEEcC--CCCEEEEEecCCcEEE
Q 000346 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVLHSPEKKMESISVDTEVHLALTP--LQPVVFFGFHRRMSVT 137 (1630)
Q Consensus 61 ~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-~v~fspdg~~asgs~Dgtv~L~~sp--dg~~LaSgs~Dg~tI~ 137 (1630)
...|.++...-- |..|++++.|++|+|+.++.+.. ...-. +.|+......+.+.. -|.+|++++.|+ .|.
T Consensus 11 ~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~-----L~Gh~GPVwqv~wahPk~G~iLAScsYDg-kVI 83 (299)
T KOG1332|consen 11 EDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAE-----LTGHSGPVWKVAWAHPKFGTILASCSYDG-KVI 83 (299)
T ss_pred hhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeE-----ecCCCCCeeEEeecccccCcEeeEeecCc-eEE
Confidence 366777666666 89999999999999999865432 00000 335555556665543 678999999999 999
Q ss_pred EEEcccCCccceeeecCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCC--cEEEEE-e-cCCceeecCcccEEEc
Q 000346 138 VVGTVEGGRAPTKIKTDLKKPIVNLACHPR--LPVLYVAYADGLIRAYNIHTY--AVHYTL-Q-LDNTIKLLGAGAFAFH 211 (1630)
Q Consensus 138 IwDl~sg~~~~i~il~gH~~~ItsLafSPd--g~lLaSgS~DGtIrIWDl~t~--~~i~tL-~-~~~~V~IsGi~sVafS 211 (1630)
+|.-..+..........|+..|++++|-|. |-.|++++.||.|.|.++++. -....+ . |.-.|+ +++|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn-----sVswa 158 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN-----SVSWA 158 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc-----eeeec
Confidence 999888744566677899999999999995 458999999999999998754 111111 1 355566 99999
Q ss_pred CC---C-----------CEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCC----CEEEEEECCCceEEE
Q 000346 212 PT---L-----------EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML----RLLVTLCRDGSLQVW 273 (1630)
Q Consensus 212 PD---g-----------~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG----~lLaSgS~DGtIrIW 273 (1630)
|- | +.|++|+.|..|+||+..+++..+-.+|.+|...|+.++|.|.- ..|+++|.||+|.||
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 84 4 56999999999999999987654566799999999999999963 479999999999999
Q ss_pred EeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCceeE
Q 000346 274 KTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVL 333 (1630)
Q Consensus 274 Dl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Al 333 (1630)
..+...++-+......| ...+|.+.|.+.-|+.|+
T Consensus 239 t~~~e~e~wk~tll~~f-------------------------~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEF-------------------------PDVVWRVSWSLSGNILAV 273 (299)
T ss_pred EecCccCcccccccccC-------------------------CcceEEEEEeccccEEEE
Confidence 88743333222222222 234678899999998884
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=182.18 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=188.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEE--Ec-CCCCEEE-EEEeCCCCCEEEEEECCCeEEEEECCCCcE-
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIAS--ID-INSPVVR-MAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~t--l~-~~~~Vts-VafSpd~g~lLaSgS~DGtIrVWDl~tge~- 96 (1630)
.|+.+++.+.. ++++++. +++++|+-..++.+.+ +. +++.|.. ++|-+.++-.+++|+.|.+|.+|...+...
T Consensus 16 DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 16 DVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred chheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 67888876654 7778886 8899999887776553 34 4466666 888864356799999999999999876654
Q ss_pred -----------EEEEcCCCCeEEeecCCeEEEEE--------------------cCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 97 -----------FVLHSPEKKMESISVDTEVHLAL--------------------TPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 97 -----------~v~fspdg~~asgs~Dgtv~L~~--------------------spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
++....++..++++.|.+.++|. .|++ .+++|+.|. +|++|.- +
T Consensus 95 ~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK-tIklWk~--~- 169 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADK-TIKLWKG--G- 169 (745)
T ss_pred hhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcc-eeeeccC--C-
Confidence 33333444458889998877764 3444 789999999 9999985 4
Q ss_pred ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCC
Q 000346 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1630)
Q Consensus 146 ~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DG 224 (1630)
++.+++.+|...|+.+++-+++ .|++|+.||.|+.|++ ++.++....+ .+.+. +++...++..+++++.|+
T Consensus 170 -~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY-----sis~~~~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 170 -TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY-----SISMALSDGLIVSTGEDR 241 (745)
T ss_pred -chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEE-----EEEecCCCCeEEEecCCc
Confidence 7889999999999999999764 5788999999999998 6778777776 78887 999888888999999999
Q ss_pred eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 225 TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 225 tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+++||+.. + +.+.+......|+++.+-++|. |++|+.||.||||...
T Consensus 242 tlriW~~~--e--~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 242 TLRIWKKD--E--CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEeecC--c--eEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99999877 4 4777777777999999999887 5677889999999876
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=176.88 Aligned_cols=256 Identities=18% Similarity=0.263 Sum_probs=176.9
Q ss_pred CCCCEEEEEEeCC-CCCEEEEEECCCeEEEEECCCCcE-------EEEEcCCCCe--EEeecCCeEEEEEcCCC-CEEEE
Q 000346 60 INSPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQS-------FVLHSPEKKM--ESISVDTEVHLALTPLQ-PVVFF 128 (1630)
Q Consensus 60 ~~~~VtsVafSpd-~g~lLaSgS~DGtIrVWDl~tge~-------~v~fspdg~~--asgs~Dgtv~L~~spdg-~~LaS 128 (1630)
|.+.++.+.-++- +..+.++-++.|.|.|||+...-. .+..+..... ..++..--..+.|+|.. ..+++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 3466777766665 135666667889999999853311 1222222222 22333333667777743 24777
Q ss_pred EecCCcEEEEEEcccCC-ccceeeecCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---cEEEEEecCCceeec
Q 000346 129 GFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHTY---AVHYTLQLDNTIKLL 203 (1630)
Q Consensus 129 gs~Dg~tI~IwDl~sg~-~~~i~il~gH~~~ItsLafSPd-g~lLaSgS~DGtIrIWDl~t~---~~i~tL~~~~~V~Is 203 (1630)
|.-.. .|++|...++. ..-..-+.+|+..|-.++|||. ...|++||.||+|+|||+|.+ .++.+-.+...|+
T Consensus 230 GDc~~-~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN-- 306 (440)
T KOG0302|consen 230 GDCVK-GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN-- 306 (440)
T ss_pred Ccccc-ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee--
Confidence 77777 89999988873 2234556789999999999994 458999999999999999988 5565544578899
Q ss_pred CcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc-eeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeeeecCC
Q 000346 204 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVIINP 281 (1630)
Q Consensus 204 Gi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~-~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~~~~p 281 (1630)
.+.|+.+-.+|++|++||+++|||++.-+. ..+..+.-|..+|+++.|+|. ...|++++.|..|.+||+.+....
T Consensus 307 ---VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 307 ---VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred ---eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 999999888999999999999999986321 237899999999999999994 567888899999999999865442
Q ss_pred CCCCCccccccCCccccccccccc--cccCCcccccCCCeEEEEeCCCCCceeE
Q 000346 282 NRPPMQANFFEPASIESIDIPRIL--SQQGGEAVYPLPRVRALEVHPRLNLAVL 333 (1630)
Q Consensus 282 nk~~~~a~fFe~~~I~slDi~~iL--s~~gge~vy~l~ri~~v~~HPk~Nl~Al 333 (1630)
......+. .++. |++..| ..+| -..++.+.||+..+-..+
T Consensus 384 ee~~~~a~----~~L~--dlPpQLLFVHqG------Qke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 384 EEIDQEAA----EGLQ--DLPPQLLFVHQG------QKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred hhhccccc----cchh--cCCceeEEEecc------hhHhhhheeccCCCCeEE
Confidence 21111100 0011 233221 2222 344567899998886554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=162.86 Aligned_cols=201 Identities=10% Similarity=0.126 Sum_probs=170.7
Q ss_pred EcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEE
Q 000346 58 IDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSV 136 (1630)
Q Consensus 58 l~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI 136 (1630)
+++| .+++.+.|+.+ |.+|.+++.|.+..||-..+|+..-++. |+....+++....+...+++|+.|. ++
T Consensus 6 l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~-------GHtGavW~~Did~~s~~liTGSAD~-t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYD-------GHTGAVWCCDIDWDSKHLITGSADQ-TA 76 (327)
T ss_pred cccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeec-------CCCceEEEEEecCCcceeeeccccc-ee
Confidence 4445 99999999999 9999999999999999876666544443 4454557777788889999999999 99
Q ss_pred EEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcC-------CCcEEEEEec-CCceeec
Q 000346 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-----DGLIRAYNIH-------TYAVHYTLQL-DNTIKLL 203 (1630)
Q Consensus 137 ~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-----DGtIrIWDl~-------t~~~i~tL~~-~~~V~Is 203 (1630)
++||..+| +++..+. ...+|..+.|+++|++++.+.. .+.|.++|++ ...+...+.. +..++
T Consensus 77 kLWDv~tG--k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit-- 151 (327)
T KOG0643|consen 77 KLWDVETG--KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT-- 151 (327)
T ss_pred EEEEcCCC--cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee--
Confidence 99999999 6766665 3678999999999998877764 3579999998 3455566655 77777
Q ss_pred CcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 204 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 204 Gi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.+-|.|-+++|++|..||.|.+||.++++. ++..-+.|...|+.+.+++|..+++++|.|.+-++||+.
T Consensus 152 ---~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 152 ---SALWGPLGETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred ---eeeecccCCEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 999999999999999999999999999864 677888999999999999999999999999999999987
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-17 Score=198.01 Aligned_cols=221 Identities=13% Similarity=0.172 Sum_probs=186.7
Q ss_pred CCEEEEEECCe-EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeec
Q 000346 33 QALIAVAIGTY-IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISV 111 (1630)
Q Consensus 33 G~lLasgs~Gt-I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~ 111 (1630)
+.+++.+...+ +++||.....+ |...|.++..-.. +..+++|++|..+-+|.+..-...+. +.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~~~-----hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S-------~~~he 70 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREFVA-----HSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITS-------LTGHE 70 (825)
T ss_pred ccccceeeeeeccccccchhhhh-----hhhhhceeeeecc-ceeeccCCCceeeccccccCCchhhe-------eeccC
Confidence 33444444433 78888652221 3366777777555 88999999999999999743322222 34666
Q ss_pred CCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEE
Q 000346 112 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191 (1630)
Q Consensus 112 Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i 191 (1630)
..+-++-++.....|+.|+.++ +|++||++.+ +.++++.+|...+.++.|||-+.++++|+.|+.+++||++...|.
T Consensus 71 spIeSl~f~~~E~Llaagsasg-tiK~wDleeA--k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~ 147 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASG-TIKVWDLEEA--KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS 147 (825)
T ss_pred CcceeeecCcchhhhcccccCC-ceeeeehhhh--hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence 6778888999999999999999 9999999998 788899999999999999999999999999999999999988899
Q ss_pred EEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 192 YTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 192 ~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
+++.+ ...+. .+.|+|+|+|+++|++|.+++|||+..++ +...|..|...+.++.|||..-++++||.|++|
T Consensus 148 ~~~~s~~~vv~-----~l~lsP~Gr~v~~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 148 HTYKSHTRVVD-----VLRLSPDGRWVASGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTV 220 (825)
T ss_pred eeecCCcceeE-----EEeecCCCceeeccCCcceeeeecccccc--cccccccccccccccccCchhhhhccCCCCcee
Confidence 99887 66677 89999999999999999999999999888 488899999999999999999999999999999
Q ss_pred EEEEee
Q 000346 271 QVWKTR 276 (1630)
Q Consensus 271 rIWDl~ 276 (1630)
++||+.
T Consensus 221 ~f~dle 226 (825)
T KOG0267|consen 221 RFWDLE 226 (825)
T ss_pred eeeccc
Confidence 999998
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=169.42 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=185.1
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCC------------cEEEEEc--CCCCEEEEEEe-------CCCCCEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTG------------SRIASID--INSPVVRMAYS-------PTSGHAVVAI 80 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg------------~~i~tl~--~~~~VtsVafS-------pd~g~lLaSg 80 (1630)
-.++..|+|||..|++-+. +.+.+|++... +...+++ ....|..-+|- |+ .+++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeec
Confidence 3568899999999999998 66999987511 1122233 23668888876 55 7899999
Q ss_pred ECCCeEEEEECCCCcEEEEEcCCCCe--EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEc-ccCCccce-ee-----
Q 000346 81 LEDCTIRSCDFDTEQSFVLHSPEKKM--ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPT-KI----- 151 (1630)
Q Consensus 81 S~DGtIrVWDl~tge~~v~fspdg~~--asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl-~sg~~~~i-~i----- 151 (1630)
+.|.-|++||.-+|+....|+.-... ++ ...++.|+|+|..|+.|... +|+++|+ +.|. .|. ..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~t----aAhsL~Fs~DGeqlfaGykr--cirvFdt~RpGr-~c~vy~t~~~~ 202 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYT----AAHSLQFSPDGEQLFAGYKR--CIRVFDTSRPGR-DCPVYTTVTKG 202 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhh----hheeEEecCCCCeEeecccc--eEEEeeccCCCC-CCcchhhhhcc
Confidence 99999999999999875444422221 11 23678999999998887654 6899999 4442 321 11
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeC-CCeEEE
Q 000346 152 KTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLA 228 (1630)
Q Consensus 152 l~gH~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~-DGtVrV 228 (1630)
..+..+-|.+++||| +...+++++...++-||.-....+++.+-+ .+.|+ .+.|+++|+.|++|.+ |..|..
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT-----hL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT-----HLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee-----eEEeccCcCeecccccCCCeEEE
Confidence 234477889999999 555899999999999998888899988887 88998 9999999999999986 778999
Q ss_pred EECCCCCceeEEEeeccCC-CeEEEEE--eCCCCEEEEEECCCceEEEEeeeecC
Q 000346 229 WDVSIERPSMIGIIQVGSQ-PITSVAW--LPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 229 WDl~tgk~~lv~tL~gH~~-~VssVsf--SPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
||++.... .+..+..|.. .=..|-| .|+|++|++|+.||.|++||+....+
T Consensus 278 WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 278 WDIRYSRD-PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred Eeehhccc-hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 99997543 3666777765 3334444 68899999999999999999986444
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=185.25 Aligned_cols=241 Identities=18% Similarity=0.183 Sum_probs=188.6
Q ss_pred CCcEEEEEcCCCCEEEE-EEC-CeEEEEECCCCcEEEEEc-CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECC-----
Q 000346 22 LQPHEAAFHPNQALIAV-AIG-TYIIEFDTLTGSRIASID-IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFD----- 92 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLas-gs~-GtI~VWDl~tg~~i~tl~-~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~----- 92 (1630)
.+|++++|..||+.+++ |+. |.+-+||++..+.+..+. .| +.|....|.+. ...+++.+.|+++++|-.+
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCCCCc
Confidence 38999999999986554 444 889999999877766666 44 77777777776 6677777777666666333
Q ss_pred -------------------CCcE---------------------------------------------------------
Q 000346 93 -------------------TEQS--------------------------------------------------------- 96 (1630)
Q Consensus 93 -------------------tge~--------------------------------------------------------- 96 (1630)
-+..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 0000
Q ss_pred -------------------------------------------------EEEEcCCCCe-EEeecCCeEE----------
Q 000346 97 -------------------------------------------------FVLHSPEKKM-ESISVDTEVH---------- 116 (1630)
Q Consensus 97 -------------------------------------------------~v~fspdg~~-asgs~Dgtv~---------- 116 (1630)
+++.++.|+. +.|...|.+.
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 4555666666 5555555433
Q ss_pred ---------------EEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 000346 117 ---------------LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181 (1630)
Q Consensus 117 ---------------L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIr 181 (1630)
++....+..+++++.+| .+++||..+. ..+..+. ....+.++..|.....++.+..|-.|+
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G-ilkfw~f~~k--~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG-ILKFWDFKKK--VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcc-eEEEEecCCc--ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEE
Confidence 33344456789999999 9999999877 4444433 366788999999888999999999999
Q ss_pred EEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCE
Q 000346 182 AYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL 260 (1630)
Q Consensus 182 IWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~l 260 (1630)
++|..+.+.++.+.+ .+.|+ .++|||||+||++++.|++|++||+.++.. +..+.. ..++.+++|+|+|.+
T Consensus 560 vvD~~t~kvvR~f~gh~nrit-----d~~FS~DgrWlisasmD~tIr~wDlpt~~l--ID~~~v-d~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRIT-----DMTFSPDGRWLISASMDSTIRTWDLPTGTL--IDGLLV-DSPCTSLSFSPNGDF 631 (910)
T ss_pred EEEchhhhhhHHhhcccccee-----eeEeCCCCcEEEEeecCCcEEEEeccCcce--eeeEec-CCcceeeEECCCCCE
Confidence 999999999999996 99999 999999999999999999999999999984 665543 678899999999999
Q ss_pred EEEEECC-CceEEEEe
Q 000346 261 LVTLCRD-GSLQVWKT 275 (1630)
Q Consensus 261 LaSgS~D-GtIrIWDl 275 (1630)
|||...| .-|++|--
T Consensus 632 LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEEecCceEEEEEc
Confidence 9999999 57999953
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=169.96 Aligned_cols=240 Identities=17% Similarity=0.144 Sum_probs=186.6
Q ss_pred CCcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 22 LQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.-|.|++|.++|..+-.-+.|.|.||+..+.+..+... |.+.|.+++...+ |.+| +|+.|..|..||-+-.+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~-Gtll-SGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD-GTLL-SGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC-ccEe-ecCccceEEecccccccccccc
Confidence 57999999999986544344889999998888877776 5599999999988 7654 599999999998432221
Q ss_pred ---------E---------E----------EEcCCCCe-EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcc
Q 000346 97 ---------F---------V----------LHSPEKKM-ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1630)
Q Consensus 97 ---------~---------v----------~fspdg~~-asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~ 147 (1630)
. + .++..-.. +.++.|+.+.++.+|+.+.+++++.|+ .+++|+ .+ +
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk-~v~lW~---~~-k 399 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK-HVRLWN---DH-K 399 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc-eEEEcc---CC-c
Confidence 0 0 01111111 345556668888899999999999999 999999 32 3
Q ss_pred ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEE
Q 000346 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLL 227 (1630)
Q Consensus 148 ~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVr 227 (1630)
...... -..++.|+.|||.| .++.|+..|...+.|.++...+..-....+++ ++.|+|+|.+|++|+.|+.|+
T Consensus 400 ~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls-----~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 400 LEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLS-----VVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred eeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceE-----EEEEcCCCCEEEEecCCCeEE
Confidence 333222 25688999999999 99999999999999999865554444478888 999999999999999999999
Q ss_pred EEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEe
Q 000346 228 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 228 VWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
||.+..........-..|.++|+.+.|++|++++.+-|.|-.|..|..
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 999886543334444445589999999999999999999999999943
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-15 Score=158.33 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=173.6
Q ss_pred EEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECC------CCcE---------------------EEEEcCCCCe
Q 000346 54 RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD------TEQS---------------------FVLHSPEKKM 106 (1630)
Q Consensus 54 ~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~------tge~---------------------~v~fspdg~~ 106 (1630)
++.+++....|++++|+|. |.+.++|+...++|+..+. .+.. |.+|+|+|.+
T Consensus 25 ~i~~l~dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEecchhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 4555556688999999999 9999999999999987542 1110 8999999999
Q ss_pred -EEeecCCeEEEEE---------------------------c--C--CCCEEEEEe-cCCcEEEEEEcccCCccceeeec
Q 000346 107 -ESISVDTEVHLAL---------------------------T--P--LQPVVFFGF-HRRMSVTVVGTVEGGRAPTKIKT 153 (1630)
Q Consensus 107 -asgs~Dgtv~L~~---------------------------s--p--dg~~LaSgs-~Dg~tI~IwDl~sg~~~~i~il~ 153 (1630)
++++.|..+++.- . | .+.++++++ .|. .|.+-|-..+ +..+.+.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc-~iy~tdc~~g--~~~~a~s 180 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC-KIYITDCGRG--QGFHALS 180 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc-eEEEeecCCC--Ccceeec
Confidence 8888887754432 1 1 123455544 344 7777777777 7889999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--------CCceeecCcccEEEcCCCCEEEEEeCCCe
Q 000346 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--------DNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--------~~~V~IsGi~sVafSPDg~~LaSgS~DGt 225 (1630)
+|++.|.++- +-++-.+++|+.|.+|++||++-..++.++.. ...|. +++..|.|++|++|-.|..
T Consensus 181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava-----av~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA-----AVAVDPSGRLLASGHADSS 254 (350)
T ss_pred CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE-----EEEECCCcceeeeccCCCc
Confidence 9999998762 33678999999999999999999999988863 23455 8999999999999999999
Q ss_pred EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 226 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
..+||++-++. ++.+..|+..|.++.|+|.-.++.++|.|..|++=|+.-.
T Consensus 255 c~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 255 CMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999998885 9999999999999999999999999999999999988633
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=190.12 Aligned_cols=241 Identities=14% Similarity=0.223 Sum_probs=184.4
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCC----cEEEEEc----CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCC
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTG----SRIASID----INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg----~~i~tl~----~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tg 94 (1630)
....|+..++-..++.++...++||.+... .+...+. .+..+..|.|+.-..++|++++..|.|.+||+...
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred ccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 567788889988999998888888877633 2222222 12456788898656799999999999999999651
Q ss_pred ---cEEEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCC
Q 000346 95 ---QSFVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLP 169 (1630)
Q Consensus 95 ---e~~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~ 169 (1630)
+....|... .....++.+++.. .+|++|+.|+ +|++||++.. ....++.+....|+.+.|+| .+.
T Consensus 121 ~rnk~l~~f~EH-------~Rs~~~ldfh~tep~iliSGSQDg-~vK~~DlR~~--~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 121 IRNKLLTVFNEH-------ERSANKLDFHSTEPNILISGSQDG-TVKCWDLRSK--KSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ccchhhhHhhhh-------ccceeeeeeccCCccEEEecCCCc-eEEEEeeecc--cccccccccchhhhceeeccCCCc
Confidence 112223221 2223456666655 5889999999 9999999988 67777777889999999999 677
Q ss_pred EEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCC
Q 000346 170 VLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 170 lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.|+++.+.|.+++||++.. ++...+.. .+.|. ++.|||++.|||+|++|+.|+|||+.+.+.....++.. ..
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~-----c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-ia 264 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL-----CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IA 264 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceE-----EEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cc
Confidence 8999999999999999965 44455554 88888 99999999999999999999999999776534444433 57
Q ss_pred CeEEEEEeCCCC-EEEEEE--CCCceEEEEeeeec
Q 000346 248 PITSVAWLPMLR-LLVTLC--RDGSLQVWKTRVII 279 (1630)
Q Consensus 248 ~VssVsfSPdG~-lLaSgS--~DGtIrIWDl~~~~ 279 (1630)
+|.+|.|-|... .|++++ .|-.|+|||++...
T Consensus 265 pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred eeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 899999999765 577776 46699999998433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=167.63 Aligned_cols=198 Identities=16% Similarity=0.191 Sum_probs=154.7
Q ss_pred CcEEEEEcC-CCCEEEEEEC-CeEEEEECCCCc------------EEEEEc---CC-CCEEEEEEeCCCCCEEEEEECCC
Q 000346 23 QPHEAAFHP-NQALIAVAIG-TYIIEFDTLTGS------------RIASID---IN-SPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 23 rV~~LaFSP-dG~lLasgs~-GtI~VWDl~tg~------------~i~tl~---~~-~~VtsVafSpd~g~lLaSgS~DG 84 (1630)
.|+++...+ .|+++++|+. |.|.+||+++.. ++..-+ +| -.|.++.|-|-+.-.+.+++.|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 789999987 6889999988 779999997432 111111 23 57999999997678999999999
Q ss_pred eEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCC---CCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEE
Q 000346 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPL---QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN 161 (1630)
Q Consensus 85 tIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spd---g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~Its 161 (1630)
+++|||.+|.+....|.-.+... +-.++|- .-++++|..+. .|++-|+.+| .+.+++.+|...|.+
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VY--------shamSp~a~sHcLiA~gtr~~-~VrLCDi~SG--s~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVY--------SHAMSPMAMSHCLIAAGTRDV-QVRLCDIASG--SFSHTLSGHRDGVLA 193 (397)
T ss_pred eEEEeecccceeeEEeecCceee--------hhhcChhhhcceEEEEecCCC-cEEEEeccCC--cceeeeccccCceEE
Confidence 99999999998877777555431 1122222 12455666666 9999999999 899999999999999
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEEcCCC-cEEEEEec---------------CCceeecCcccEEEcCCCCEEEEEeCCC
Q 000346 162 LACHPRLPV-LYVAYADGLIRAYNIHTY-AVHYTLQL---------------DNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1630)
Q Consensus 162 LafSPdg~l-LaSgS~DGtIrIWDl~t~-~~i~tL~~---------------~~~V~IsGi~sVafSPDg~~LaSgS~DG 224 (1630)
+.|+|...+ |++|+.||.|++||++.- .|..++.. .+.|+ .++|+.|+.++++++.|.
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn-----gla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN-----GLAWTSDARYLASCGTDD 268 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee-----eeeecccchhhhhccCcc
Confidence 999997764 889999999999999854 44444432 23344 899999999999999999
Q ss_pred eEEEEECCCCCc
Q 000346 225 TLLAWDVSIERP 236 (1630)
Q Consensus 225 tVrVWDl~tgk~ 236 (1630)
.+++|+..+|+.
T Consensus 269 r~r~wn~~~G~n 280 (397)
T KOG4283|consen 269 RIRVWNMESGRN 280 (397)
T ss_pred ceEEeecccCcc
Confidence 999999987753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-15 Score=167.39 Aligned_cols=223 Identities=14% Similarity=0.193 Sum_probs=164.3
Q ss_pred EEEEECCCCcEE-----EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----EEEEcCCCCeEEeecCC
Q 000346 44 IIEFDTLTGSRI-----ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----FVLHSPEKKMESISVDT 113 (1630)
Q Consensus 44 I~VWDl~tg~~i-----~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----~v~fspdg~~asgs~Dg 113 (1630)
..-|+....... ..+++| ..|++++|+.| |..|++++.|++|++|+++.-.. ++. ...-.|.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-------~nve~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIR-------QNVEYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhh-------ccccCCC
Confidence 555665544433 345556 89999999999 99999999999999999876432 111 1223445
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEEcccCC---cc--ce-----eeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000346 114 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG---RA--PT-----KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAY 183 (1630)
Q Consensus 114 tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~---~~--~i-----~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIW 183 (1630)
...+.|.||-.-++.....+.++++|.+.... -. .+ ..-..|.-.+.++-.-..+.+|++++.|.+|.+|
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw 214 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLW 214 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEE
Confidence 56777777776555554455588888875431 00 01 1113455666777777788899999999999999
Q ss_pred EcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC---CC---ceeEEEeeccCCCeEEEEEeC
Q 000346 184 NIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI---ER---PSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 184 Dl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t---gk---~~lv~tL~gH~~~VssVsfSP 256 (1630)
|++ |+.+.++.. ...-. ..+.||+|+++++++..-.|+||.+-- |. ..-+..+.+|.+.|..++|++
T Consensus 215 ~lk-Gq~L~~idtnq~~n~-----~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 215 DLK-GQLLQSIDTNQSSNY-----DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred ecC-Cceeeeecccccccc-----ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 999 888888876 33333 789999999999999999999997532 21 112467899999999999999
Q ss_pred CCCEEEEEECCCceEEEEeeeecC
Q 000346 257 MLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
++..++|.|.||+++|||++....
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEe
Confidence 999999999999999999985544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=169.57 Aligned_cols=257 Identities=15% Similarity=0.179 Sum_probs=198.1
Q ss_pred ccceeeeeeeeccCCCCCCCCcEEEEEcC--CCCEEEEEECCe---EEEEECCCCcEEEEEcC-CCCEEEEEEeCCCCCE
Q 000346 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHP--NQALIAVAIGTY---IIEFDTLTGSRIASIDI-NSPVVRMAYSPTSGHA 76 (1630)
Q Consensus 3 W~t~q~LelqhvGrg~skp~rV~~LaFSP--dG~lLasgs~Gt---I~VWDl~tg~~i~tl~~-~~~VtsVafSpd~g~l 76 (1630)
|++...-.+.-.|..+ ..|.|++||+ .|.+|.+-.++. +.|||+..+......+. ...|....|+|.+.++
T Consensus 139 Wdsv~L~TL~V~g~f~---~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nl 215 (626)
T KOG2106|consen 139 WDSVTLSTLHVIGFFD---RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNL 215 (626)
T ss_pred cccccceeeeeecccc---ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcE
Confidence 6654443343343222 2689999998 456666666633 99999998887777763 4778999999996777
Q ss_pred EEEEECCCeEEEEECCCCcE----------------EEEEcCCCCeEEeecCCeEEEEE---------------------
Q 000346 77 VVAILEDCTIRSCDFDTEQS----------------FVLHSPEKKMESISVDTEVHLAL--------------------- 119 (1630)
Q Consensus 77 LaSgS~DGtIrVWDl~tge~----------------~v~fspdg~~asgs~Dgtv~L~~--------------------- 119 (1630)
+++++ .+.+.+|+.+.+.. +++|.++|..+++..+|.+.+|.
T Consensus 216 iit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~ 294 (626)
T KOG2106|consen 216 IITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLC 294 (626)
T ss_pred EEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEE
Confidence 77775 48999999887644 89999999988888888876664
Q ss_pred -cCCCCEEEEEecCCcEEEEEEcccCCcc--------------------------------------ceeeecCCCCCeE
Q 000346 120 -TPLQPVVFFGFHRRMSVTVVGTVEGGRA--------------------------------------PTKIKTDLKKPIV 160 (1630)
Q Consensus 120 -spdg~~LaSgs~Dg~tI~IwDl~sg~~~--------------------------------------~i~il~gH~~~It 160 (1630)
..+| .|++|+.|+ .|..||-.-.... ...+..+|.....
T Consensus 295 ~lr~G-tllSGgKDR-ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw 372 (626)
T KOG2106|consen 295 MLRDG-TLLSGGKDR-KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELW 372 (626)
T ss_pred EecCc-cEeecCccc-eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccccee
Confidence 2233 456699999 9999984211000 0111267777888
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEE
Q 000346 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240 (1630)
Q Consensus 161 sLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~ 240 (1630)
.++.||+...+++++.|+.+++|+ ..++..+.....++. +++|+|.| .++.|+..|...|.|..+.. ++.
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~-----~~~fhpsg-~va~Gt~~G~w~V~d~e~~~--lv~ 442 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAE-----CADFHPSG-VVAVGTATGRWFVLDTETQD--LVT 442 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCcee-----EeeccCcc-eEEEeeccceEEEEecccce--eEE
Confidence 999999999999999999999998 567777776677777 99999999 99999999999999999855 343
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 241 tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.-.. ..++++++|+|+|.+||.||.|+.|+||.+.
T Consensus 443 ~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 443 IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 3333 7899999999999999999999999999886
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=175.26 Aligned_cols=241 Identities=21% Similarity=0.223 Sum_probs=180.3
Q ss_pred CCCcEEEEEcCCCC--EEEEEEC-CeEEEEECCCCcE----EEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 21 PLQPHEAAFHPNQA--LIAVAIG-TYIIEFDTLTGSR----IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 21 p~rV~~LaFSPdG~--lLasgs~-GtI~VWDl~tg~~----i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
..+|.|++|||..+ ++++|.. |+|-+||+.+.+. +..+..| .+|.++.|+|.+...+++.|.||+|++-|++
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 44899999999766 6666666 8899999963322 4444544 9999999999878899999999999999998
Q ss_pred CCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC-CEE
Q 000346 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVL 171 (1630)
Q Consensus 93 tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg-~lL 171 (1630)
.+.....++.+.... ....+-++.+...++++.+-+ ...+||.+++. .....+.-|+..|++++++|-. .+|
T Consensus 266 ~~i~e~v~s~~~d~~-----~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~-s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNI-----WFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDG-SEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred chhhHHHhhcCccce-----eeeeccccCCCccEEEeeccc-ceEEEEeecCC-ccchhhhhhhcccceeecCCCCchhe
Confidence 775433333221110 001223455666778888888 89999999885 5456667788899999999954 579
Q ss_pred EEEeCCCeEEEEEcCCCc-----EEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECC---CC-CceeEEEe
Q 000346 172 YVAYADGLIRAYNIHTYA-----VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS---IE-RPSMIGII 242 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~-----~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~---tg-k~~lv~tL 242 (1630)
++++.|++.+|||++... .+.++.|...|+ +..|||++-.|++.+.|..|+|||.. .. .+ ..++
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~-----sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p--~~~I 411 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN-----SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP--LGTI 411 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceee-----eeEEcCCCCceEeeccCCceEEeecccccccCCc--ccee
Confidence 999999999999998542 356667788898 99999987779999999999999984 22 22 2222
Q ss_pred eccC----CC--eEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 243 QVGS----QP--ITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 243 ~gH~----~~--VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.|. .+ .....|+|+..+|++|-.-..|-|+|-.
T Consensus 412 -~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 412 -PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred -eccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 222 22 3457899999999999998888888765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=181.30 Aligned_cols=251 Identities=17% Similarity=0.181 Sum_probs=183.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEE--EcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE--
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIAS--IDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~t--l~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-- 96 (1630)
.|..+.|-|....|++++. .++++||+.+++++.. +.+| +.|.+++|.+++...|++|+.||.|.|||++-...
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 6888999996677888888 4599999999988766 5555 99999999999889999999999999999865432
Q ss_pred --------EEEEc----CCC--------Ce-EEeecCCeEEEEEcCCCCEEEEEec-CCcEEEEEEcccCC----cccee
Q 000346 97 --------FVLHS----PEK--------KM-ESISVDTEVHLALTPLQPVVFFGFH-RRMSVTVVGTVEGG----RAPTK 150 (1630)
Q Consensus 97 --------~v~fs----pdg--------~~-asgs~Dgtv~L~~spdg~~LaSgs~-Dg~tI~IwDl~sg~----~~~i~ 150 (1630)
...+. |.. .. ......+.+.+.+..|...|++++. |+ .|++||+++.. ..+..
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~-~iKVWDLRk~~~~~r~ep~~ 260 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADS-TIKVWDLRKNYTAYRQEPRG 260 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCc-ceEEEeecccccccccCCCc
Confidence 01110 100 00 2222333467778888889999887 88 99999998752 11222
Q ss_pred --eecCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc--EEEEEec--CCceeecCcccEEEcCCCCEEEEEe
Q 000346 151 --IKTDL---KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA--VHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGD 221 (1630)
Q Consensus 151 --il~gH---~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~--~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS 221 (1630)
.+..| ...+.++.....|.+|++.+.|+.|..|++.+.. .+..+.+ ...+. ..-..+||+.+|++|+
T Consensus 261 ~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~----vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 261 SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY----VKSELSPDDCSLLSGS 336 (720)
T ss_pred ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee----eeeecCCCCceEeccC
Confidence 22233 3457788888888888888889999999988653 3333333 12221 1346789999999999
Q ss_pred CCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeeeec
Q 000346 222 RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 222 ~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
.|...++|.+.+-+. -...+.+|...|++++|.|. -.-++++++|-+++||++....
T Consensus 337 sd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 337 SDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 999999999997643 25567899999999999883 2346677999999999996433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-16 Score=176.67 Aligned_cols=211 Identities=12% Similarity=0.118 Sum_probs=169.5
Q ss_pred EEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE------------EEEEcCCCCeEEeecCCeEEEEE--
Q 000346 55 IASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKMESISVDTEVHLAL-- 119 (1630)
Q Consensus 55 i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~------------~v~fspdg~~asgs~Dgtv~L~~-- 119 (1630)
+..+.+| ..|.+++=+|..-..+++|+.||.|++||+.+..+ .+++.. +..++++.|.++..|-
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeecc
Confidence 4556666 89999999998447899999999999999988766 233332 3337788888877776
Q ss_pred ------------------cCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC-CEEEEEeCCCeE
Q 000346 120 ------------------TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLI 180 (1630)
Q Consensus 120 ------------------spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg-~lLaSgS~DGtI 180 (1630)
+..+..+++++. .|.+||.... .+++.+.--...|.++.|+|-. ..|++|..|+.|
T Consensus 138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe---~i~IWD~~R~--~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 138 GPPLHTILGKSVYLGIDHHRKNSVFATCGE---QIDIWDEQRD--NPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred CCcceeeeccccccccccccccccccccCc---eeeecccccC--CccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 111233344433 5799998776 6777776667889999999954 578888899999
Q ss_pred EEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCE
Q 000346 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL 260 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~l 260 (1630)
.+||++...+++.+...-.-+ .++|+|.+-.+++|+.|..++.||++.-+. .+....+|.+.|.++.|+|.|+-
T Consensus 213 vLyD~R~~~Pl~KVi~~mRTN-----~IswnPeafnF~~a~ED~nlY~~DmR~l~~-p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVILTMRTN-----TICWNPEAFNFVAANEDHNLYTYDMRNLSR-PLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred EEEecccCCccceeeeecccc-----ceecCccccceeeccccccceehhhhhhcc-cchhhcccceeEEEeccCCCcch
Confidence 999999999988877655556 889999888899999999999999997532 37778899999999999999999
Q ss_pred EEEEECCCceEEEEeee
Q 000346 261 LVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 261 LaSgS~DGtIrIWDl~~ 277 (1630)
|++||.|.+|+||.++.
T Consensus 287 fvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hccccccceEEEeecCC
Confidence 99999999999999874
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-15 Score=163.91 Aligned_cols=247 Identities=14% Similarity=0.169 Sum_probs=176.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCC----CcEEEEEc-CCCCEEEEEEe-CCCCCEEEEEECCCeEEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLT----GSRIASID-INSPVVRMAYS-PTSGHAVVAILEDCTIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~t----g~~i~tl~-~~~~VtsVafS-pd~g~lLaSgS~DGtIrVWDl~tge 95 (1630)
-|+|+.|.+.|+.+|+|+. ++|+|||.+. -.+....+ |.+.|..|.|. |.-|+.+|+++.|++++||.-....
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 6999999999999999999 6699999643 24566666 55999999995 5568999999999999999853111
Q ss_pred E---EEEEcCCCCeEEeecCCeEEEEEc--CCCCEEEEEecCCcEEEEEEcccCC----ccceeee-------cCCCCCe
Q 000346 96 S---FVLHSPEKKMESISVDTEVHLALT--PLQPVVFFGFHRRMSVTVVGTVEGG----RAPTKIK-------TDLKKPI 159 (1630)
Q Consensus 96 ~---~v~fspdg~~asgs~Dgtv~L~~s--pdg~~LaSgs~Dg~tI~IwDl~sg~----~~~i~il-------~gH~~~I 159 (1630)
. ...|..... +.-+......+.|. ..|-.+++++.|+ .+++|+.-... ......+ ..+....
T Consensus 95 ~~~~~~~Wv~~tt-l~DsrssV~DV~FaP~hlGLklA~~~aDG-~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 95 EEAHGRRWVRRTT-LVDSRSSVTDVKFAPKHLGLKLAAASADG-ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred cccccceeEEEEE-eecCCcceeEEEecchhcceEEEEeccCc-EEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 1 011110000 11112222334444 4456788899999 99999875431 0112222 2456778
Q ss_pred EEEEEcC---CCCEEEEEeCC-----CeEEEEEcCCC----cEEEEEec-CCceeecCcccEEEcCC----CCEEEEEeC
Q 000346 160 VNLACHP---RLPVLYVAYAD-----GLIRAYNIHTY----AVHYTLQL-DNTIKLLGAGAFAFHPT----LEWLFVGDR 222 (1630)
Q Consensus 160 tsLafSP---dg~lLaSgS~D-----GtIrIWDl~t~----~~i~tL~~-~~~V~IsGi~sVafSPD----g~~LaSgS~ 222 (1630)
.|+.|+| ...+|++|+.+ +.++||..... ..+.++.+ ...|+ .++|.|+ -..|++++.
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~-----di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR-----DISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce-----eeeeccccCCceeeEEEeec
Confidence 8999998 44689998866 47889976543 23444545 78888 9999994 357899999
Q ss_pred CCeEEEEECCCC------------------CceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 223 RGTLLAWDVSIE------------------RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 223 DGtVrVWDl~tg------------------k~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
|| |+||.+... ....+..+..|.+.|+.+.|+-.|..|++.+.||+||+|..+.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 999998731 1123566789999999999999999999999999999998763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-14 Score=161.53 Aligned_cols=223 Identities=15% Similarity=0.093 Sum_probs=164.4
Q ss_pred CEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEE-EEEECCCeEEEEECCCCcEEEEEcCCCCeEEeec
Q 000346 34 ALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQSFVLHSPEKKMESISV 111 (1630)
Q Consensus 34 ~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lL-aSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~ 111 (1630)
..+++++. +.|++||..+++.+..+.++..+++++|+|+ +..+ ++++.|+.|++||..+++....+... .
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSG-------P 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCC-------C
Confidence 46777776 7799999999999998887666788999999 7765 66778999999999887653323211 1
Q ss_pred CCeEEEEEcCCCCEEEEE-ecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCc
Q 000346 112 DTEVHLALTPLQPVVFFG-FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG-LIRAYNIHTYA 189 (1630)
Q Consensus 112 Dgtv~L~~spdg~~LaSg-s~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG-tIrIWDl~t~~ 189 (1630)
....+.++++++.++++ ..++ .|++||+.+. ..+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++
T Consensus 74 -~~~~~~~~~~g~~l~~~~~~~~-~l~~~d~~~~--~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 74 -DPELFALHPNGKILYIANEDDN-LVTVIDIETR--KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred -CccEEEECCCCCEEEEEcCCCC-eEEEEECCCC--eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 12356778898877655 4567 9999999876 55555442 34568899999999999888765 57788998887
Q ss_pred EEEEEecCCceeecCcccEEEcCCCCEEEEEe-CCCeEEEEECCCCCceeEEEeeccC-------CCeEEEEEeCCCCEE
Q 000346 190 VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGS-------QPITSVAWLPMLRLL 261 (1630)
Q Consensus 190 ~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS-~DGtVrVWDl~tgk~~lv~tL~gH~-------~~VssVsfSPdG~lL 261 (1630)
....+....... .++|+|++++|++++ .++.|++||+.+++. +..+..+. .....++|+|+++++
T Consensus 149 ~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 149 IVDNVLVDQRPR-----FAEFTADGKELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEEEEEcCCCcc-----EEEECCCCCEEEEEcCCCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEE
Confidence 766554444445 899999999886554 589999999998864 44443221 123468899999985
Q ss_pred EE-EECCCceEEEEee
Q 000346 262 VT-LCRDGSLQVWKTR 276 (1630)
Q Consensus 262 aS-gS~DGtIrIWDl~ 276 (1630)
+. .+.++.|.+||+.
T Consensus 222 ~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 222 FVALGPANRVAVVDAK 237 (300)
T ss_pred EEEcCCCCeEEEEECC
Confidence 44 4557789999975
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=162.91 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=163.2
Q ss_pred CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----------EE--EEcCCCCeEEeecCCeEEEEEcCCCCEE
Q 000346 60 INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----------FV--LHSPEKKMESISVDTEVHLALTPLQPVV 126 (1630)
Q Consensus 60 ~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-----------~v--~fspdg~~asgs~Dgtv~L~~spdg~~L 126 (1630)
|.+.|+++...+..|+++++|+.||.|.+||++.... |+ .-+++++.... +-.+|+..|...+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i----ss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI----SSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeee----eeeEEeeecCcee
Confidence 4489999999998899999999999999999975431 21 12333333111 1345776677788
Q ss_pred EEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceee
Q 000346 127 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP---RLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKL 202 (1630)
Q Consensus 127 aSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP---dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~I 202 (1630)
.+++-|. ++++||+.+. +....+. ..+.|++-+++| ...++|+|..|-.|++.|+.+|.+.+++.+ ...|.
T Consensus 118 tssSFDh-tlKVWDtnTl--Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl- 192 (397)
T KOG4283|consen 118 TSSSFDH-TLKVWDTNTL--QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL- 192 (397)
T ss_pred ecccccc-eEEEeecccc--eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE-
Confidence 8999999 9999999887 4333333 367788888988 345789999999999999999999999998 88888
Q ss_pred cCcccEEEcCCCCE-EEEEeCCCeEEEEECCCC-C------------ceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC
Q 000346 203 LGAGAFAFHPTLEW-LFVGDRRGTLLAWDVSIE-R------------PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 203 sGi~sVafSPDg~~-LaSgS~DGtVrVWDl~tg-k------------~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG 268 (1630)
++.|+|...| |++|+.||.|++||++.. - +..+++-..|.+.|..++|+.++.++++++.|.
T Consensus 193 ----aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 193 ----AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ----EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9999998776 568889999999999853 1 112233446778899999999999999999999
Q ss_pred ceEEEEeeeecC
Q 000346 269 SLQVWKTRVIIN 280 (1630)
Q Consensus 269 tIrIWDl~~~~~ 280 (1630)
.+++|+.....+
T Consensus 269 r~r~wn~~~G~n 280 (397)
T KOG4283|consen 269 RIRVWNMESGRN 280 (397)
T ss_pred ceEEeecccCcc
Confidence 999999875554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=191.86 Aligned_cols=241 Identities=16% Similarity=0.254 Sum_probs=186.4
Q ss_pred CCcEEEEEcCCCCE----EEEEEC-CeEEEEECCC---Cc---EEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEE
Q 000346 22 LQPHEAAFHPNQAL----IAVAIG-TYIIEFDTLT---GS---RIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSC 89 (1630)
Q Consensus 22 ~rV~~LaFSPdG~l----Lasgs~-GtI~VWDl~t---g~---~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVW 89 (1630)
.|.+.++|.+.|.. |+.|.+ |.|.+||... +. .+.+.. |++.|+.+.|++..+++||+|++||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 48899999998776 666666 8899999874 22 344455 669999999999977899999999999999
Q ss_pred ECCCCcEEEEEcCCCCeEEeecCCeEEEEEc-CCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCC--CeEEEEEcC
Q 000346 90 DFDTEQSFVLHSPEKKMESISVDTEVHLALT-PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK--PIVNLACHP 166 (1630)
Q Consensus 90 Dl~tge~~v~fspdg~~asgs~Dgtv~L~~s-pdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~--~ItsLafSP 166 (1630)
|++.-+.- +++.+. ...+.+..+.|+ ...+++++++.++ .+.+||++.. +.+..+..|.. .+..++|||
T Consensus 145 Dlnn~~tP--~~~~~~---~~~~eI~~lsWNrkvqhILAS~s~sg-~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 145 DLNKPETP--FTPGSQ---APPSEIKCLSWNRKVSHILASGSPSG-RAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred ccCCcCCC--CCCCCC---CCcccceEeccchhhhHHhhccCCCC-CceeccccCC--CcccccccCCCccceeeeeeCC
Confidence 99764432 222111 112233444443 4456788899998 9999999988 66666666644 467899999
Q ss_pred CCC-EEEEEeCCC---eEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCC-CEEEEEeCCCeEEEEECCCCCceeE
Q 000346 167 RLP-VLYVAYADG---LIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIERPSMI 239 (1630)
Q Consensus 167 dg~-lLaSgS~DG---tIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg-~~LaSgS~DGtVrVWDl~tgk~~lv 239 (1630)
+.. .+++++.|. .|.+||+|.- ..++++++ ...|. ++.|++.+ ++|++++.|+.|.+|+..+++ ++
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil-----slsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl 289 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL-----SLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VL 289 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhccccccee-----eeccCCCCchhhhcccCCCCeeEecCCCce--Ee
Confidence 764 577777554 6999998843 56677765 77777 99999955 899999999999999999998 48
Q ss_pred EEeeccCCCeEEEEEeCCCC-EEEEEECCCceEEEEeee
Q 000346 240 GIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 240 ~tL~gH~~~VssVsfSPdG~-lLaSgS~DGtIrIWDl~~ 277 (1630)
..+....+++..+.|+|... .|+.++.||.|.|+.+..
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 88888889999999999766 889999999999998763
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=169.96 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=181.5
Q ss_pred EEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Q 000346 25 HEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP 102 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fsp 102 (1630)
.|++......++++|+. +.|+|||+....+.+.++.| ..|++|.++-. ..+||+++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceec
Confidence 34544445578888888 77999999977778888855 99999999988 89999999999999999998876555542
Q ss_pred CCCeEEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 000346 103 EKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-LPVLYVAYADGLI 180 (1630)
Q Consensus 103 dg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd-g~lLaSgS~DGtI 180 (1630)
+. .+..+.+-+++... +|.++++++ .|.+||+.... ....-...|..+...++|+|. ..+|++.+.|..|
T Consensus 162 ~s------gqsvRll~ys~skr~lL~~asd~G-~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 162 DS------GQSVRLLRYSPSKRFLLSIASDKG-AVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred CC------CCeEEEeecccccceeeEeeccCC-eEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceE
Confidence 21 11224667777775 456677888 99999998763 445556789999999999994 5578899999999
Q ss_pred EEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCE
Q 000346 181 RAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL 260 (1630)
Q Consensus 181 rIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~l 260 (1630)
.+||++..+....+..+.+.. .++|.++|.+|+.|+..|.|..||++..+. .+.++..|...|++++|-|.- .
T Consensus 234 ~~yD~~s~~s~~~l~y~~Pls-----tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~-Pv~v~sah~~sVt~vafq~s~-t 306 (673)
T KOG4378|consen 234 NIYDIRSQASTDRLTYSHPLS-----TVAFSECGTYLCAGNSKGELIAYDMRSTKA-PVAVRSAHDASVTRVAFQPSP-T 306 (673)
T ss_pred EEeecccccccceeeecCCcc-----eeeecCCceEEEeecCCceEEEEecccCCC-CceEeeecccceeEEEeeecc-e
Confidence 999999888888887788888 999999999999999999999999996543 488899999999999998864 4
Q ss_pred EEE
Q 000346 261 LVT 263 (1630)
Q Consensus 261 LaS 263 (1630)
+++
T Consensus 307 vlt 309 (673)
T KOG4378|consen 307 VLT 309 (673)
T ss_pred eee
Confidence 443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-14 Score=157.08 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=158.2
Q ss_pred CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEE
Q 000346 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG 140 (1630)
Q Consensus 61 ~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwD 140 (1630)
...|.+++|||....+++++|.|++||+|+++.... +.| +...........+.|+.+|..+++|+-|+ .+++||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk-~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---LVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDK-QAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc---ccc--hhhhccCCCeEEEEEccCCceEEeeccCC-ceEEEE
Confidence 478999999996477888999999999999865311 111 11111223347789999999999999999 999999
Q ss_pred cccCCccceeeecCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCcEEEEEecCCcee-----------------
Q 000346 141 TVEGGRAPTKIKTDLKKPIVNLACHPRLP--VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIK----------------- 201 (1630)
Q Consensus 141 l~sg~~~~i~il~gH~~~ItsLafSPdg~--lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~----------------- 201 (1630)
+.++ + ......|..+|.++.|-+... .|++||.|.+|+.||.+....+.++.....+.
T Consensus 101 L~S~--Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 101 LASG--Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred ccCC--C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCc
Confidence 9988 3 455567999999999988655 89999999999999999877766664211110
Q ss_pred --e------------------cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccC---------CCeEEE
Q 000346 202 --L------------------LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS---------QPITSV 252 (1630)
Q Consensus 202 --I------------------sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~---------~~VssV 252 (1630)
+ -.+.+++...|..-.+.|+-+|.+.|..+..+.+..-.+++.|. ..|++|
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 0 01457777777777788999999999888775322245677776 257899
Q ss_pred EEeCCCCEEEEEECCCceEEEEee
Q 000346 253 AWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 253 sfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+|||.-..|+|.+.||++.+||-.
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeecccceEEEecCCceEEEecch
Confidence 999998999999999999999976
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=164.59 Aligned_cols=246 Identities=12% Similarity=0.132 Sum_probs=186.9
Q ss_pred CCCCcEEEEEcCC----CCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 20 KPLQPHEAAFHPN----QALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 20 kp~rV~~LaFSPd----G~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
+......++|+-+ .+++|+|+. |.|+|.|+.++++...+.+| ..|+.+.|+|+..++++++|.|.+||+|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 3446677888653 457888888 89999999999999999966 88999999999778999999999999999999
Q ss_pred CcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCC----ccc---------------------
Q 000346 94 EQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG----RAP--------------------- 148 (1630)
Q Consensus 94 ge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~----~~~--------------------- 148 (1630)
+.|...|.- +-|+.|....+-++.++..+++++.|. ++++|++.... ..+
T Consensus 168 ~~Cv~VfGG----~egHrdeVLSvD~~~~gd~i~ScGmDh-slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 168 DVCVAVFGG----VEGHRDEVLSVDFSLDGDRIASCGMDH-SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred CeEEEEecc----cccccCcEEEEEEcCCCCeeeccCCcc-eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 988665542 225677789999999999999999999 99999997321 000
Q ss_pred -eeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCc-------------EEEEEec-CCceeecCcccEEEcC
Q 000346 149 -TKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH-TYA-------------VHYTLQL-DNTIKLLGAGAFAFHP 212 (1630)
Q Consensus 149 -i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~-t~~-------------~i~tL~~-~~~V~IsGi~sVafSP 212 (1630)
..+..-|..+|-|+.|- |+++++=|-++.|..|... -.+ .+..+.. ...++ ....+|+|
T Consensus 243 ~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW---firf~~d~ 317 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW---FIRFAFDP 317 (385)
T ss_pred cccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE---EEEEeecH
Confidence 01224567777777775 5789998889999999762 111 1122221 22232 11456778
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceeEEEeecc--CCCeEEEEEeCCCCEEEEEECCCceEEEEe
Q 000346 213 TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG--SQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 213 Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH--~~~VssVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
-+++|+.|...|.|.+||++..++....++..+ ...|...+|+.||.+|+..++|++|.-||.
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 889999999999999999998765222233222 367899999999999999999999988885
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=160.63 Aligned_cols=236 Identities=14% Similarity=0.146 Sum_probs=171.6
Q ss_pred cEEEEEcCC--CCEEEEEEC-CeEEEEECC----------------CCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECC
Q 000346 24 PHEAAFHPN--QALIAVAIG-TYIIEFDTL----------------TGSRIASIDIN-SPVVRMAYSPTSGHAVVAILED 83 (1630)
Q Consensus 24 V~~LaFSPd--G~lLasgs~-GtI~VWDl~----------------tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~D 83 (1630)
++.+.-++- ..+.++-+. |.|+|||+. ..+.+.++.+| ..=++++|||-....|++|..-
T Consensus 154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV 233 (440)
T ss_pred cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence 444444443 344555555 889999975 22456677756 7779999999634568888888
Q ss_pred CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEE
Q 000346 84 CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNL 162 (1630)
Q Consensus 84 GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsL 162 (1630)
+.|++|...++...+ +..-.+++....-.+.++|.. ..+++|+-|+ +|++||++.+.++.......|...|+-|
T Consensus 234 ~~I~lw~~~~g~W~v----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg-sIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKV----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG-SIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cceEeeeeccCceee----cCccccccccchhhhccCCccCceEEeeecCc-eEEEEEecCCCccceeEeeccCCceeeE
Confidence 999999998875422 222223344444456777765 5889999999 9999999988434444448899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCC---CcEEEEEec-CCceeecCcccEEEcC-CCCEEEEEeCCCeEEEEECCCCCc-
Q 000346 163 ACHPRLPVLYVAYADGLIRAYNIHT---YAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERP- 236 (1630)
Q Consensus 163 afSPdg~lLaSgS~DGtIrIWDl~t---~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS~DGtVrVWDl~tgk~- 236 (1630)
.|+.+-.+||+|+.||+++|||++. ++++.+++. ..+|+ ++.|+| +...|++++.|..|.+||+....-
T Consensus 309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt-----sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT-----SIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee-----EEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 9999888999999999999999985 456777775 88998 999999 456788888999999999874311
Q ss_pred ---------e----eEEEeecc--CCCeEEEEEeCCC-CEEEEEECCCc
Q 000346 237 ---------S----MIGIIQVG--SQPITSVAWLPML-RLLVTLCRDGS 269 (1630)
Q Consensus 237 ---------~----lv~tL~gH--~~~VssVsfSPdG-~lLaSgS~DGt 269 (1630)
. .-+-+..| ...|..+.||+.- .++++.+.||.
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 0 00122334 4668889999864 47888888874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=167.65 Aligned_cols=252 Identities=18% Similarity=0.220 Sum_probs=190.3
Q ss_pred ccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECC--CCcEEEEEc----C-C-CCEEEEEEeCCCCCEEEEEECCC
Q 000346 14 VGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTL--TGSRIASID----I-N-SPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 14 vGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~--tg~~i~tl~----~-~-~~VtsVafSpd~g~lLaSgS~DG 84 (1630)
.||.+ -|+++.|+|.+..|++++. .++.+|... +|-.+.... + . ....+.-|+|+ ++.+++-+..|
T Consensus 264 ~GHeD----WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n-~~~ii~~g~~G 338 (764)
T KOG1063|consen 264 MGHED----WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN-SNVIIAHGRTG 338 (764)
T ss_pred cCccc----ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC-CCEEEEecccC
Confidence 46777 8999999999988888887 669999765 445555444 2 2 45888899998 88888888999
Q ss_pred eEEEEECCCCcE---------------EEEEcCCCCe-EEeecCCeEEEEE--------------------------cCC
Q 000346 85 TIRSCDFDTEQS---------------FVLHSPEKKM-ESISVDTEVHLAL--------------------------TPL 122 (1630)
Q Consensus 85 tIrVWDl~tge~---------------~v~fspdg~~-asgs~Dgtv~L~~--------------------------spd 122 (1630)
..++|....... .+.|+|.|.+ ++.+.|.+.++.. .+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 999998332111 7889999998 8888888754432 222
Q ss_pred CCEEEEEecCCcEEEEEEccc-------------------------------------------CCc-------------
Q 000346 123 QPVVFFGFHRRMSVTVVGTVE-------------------------------------------GGR------------- 146 (1630)
Q Consensus 123 g~~LaSgs~Dg~tI~IwDl~s-------------------------------------------g~~------------- 146 (1630)
...+++|.+.. .+|+++.-. +..
T Consensus 419 ~~~FVSgAdEK-VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 419 DLQFVSGADEK-VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred Cceeeecccce-eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 22344444444 566655320 000
Q ss_pred ------------------cceeeecCCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCcEEEEEec-CCceee
Q 000346 147 ------------------APTKIKTDLKKPIVNLACHPRLPVLYVAYAD-----GLIRAYNIHTYAVHYTLQL-DNTIKL 202 (1630)
Q Consensus 147 ------------------~~i~il~gH~~~ItsLafSPdg~lLaSgS~D-----GtIrIWDl~t~~~i~tL~~-~~~V~I 202 (1630)
..++.+.||...|++++.+|+++++|+++.. ..|++|+..+...++.+.. .-.|+
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT- 576 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVT- 576 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEE-
Confidence 0011237889999999999999999999854 3599999999988887776 88888
Q ss_pred cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCce--eEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 203 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPS--MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 203 sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~--lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.++|||||++|++.++|+++.+|........ -....+.|+.-|++++|+|++.+++|+|.|++|+||...
T Consensus 577 ----~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 577 ----RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ----EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 9999999999999999999999987653210 023467899999999999999999999999999999875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=165.40 Aligned_cols=243 Identities=15% Similarity=0.176 Sum_probs=176.8
Q ss_pred CCCcEEEEEcCC-------CCEEEEEECC-eEEEEECCCCc---EE----------------EE--EcCC-CCEEEEEEe
Q 000346 21 PLQPHEAAFHPN-------QALIAVAIGT-YIIEFDTLTGS---RI----------------AS--IDIN-SPVVRMAYS 70 (1630)
Q Consensus 21 p~rV~~LaFSPd-------G~lLasgs~G-tI~VWDl~tg~---~i----------------~t--l~~~-~~VtsVafS 70 (1630)
|.-+.|+.|... |+++|.|.-+ .|.|||+.-.. +. +. -.+| ..|.+++|+
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 445678888543 6799999984 49999986110 00 00 1134 678899999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCC-CCEEEEEecCCcEEEEEEcccCCccce
Q 000346 71 PTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1630)
Q Consensus 71 pd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spd-g~~LaSgs~Dg~tI~IwDl~sg~~~~i 149 (1630)
..-.+.||+||.|.+|++||+.++++...+...+ +..-++.|++. ...+++|+.|+ +|.+.|.+.. .+.
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~-------k~Vq~l~wh~~~p~~LLsGs~D~-~V~l~D~R~~--~~s 322 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG-------KKVQTLEWHPYEPSVLLSGSYDG-TVALKDCRDP--SNS 322 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcC-------CceeEEEecCCCceEEEeccccc-eEEeeeccCc--ccc
Confidence 7767899999999999999999999854444222 23344555554 46899999999 9999999854 222
Q ss_pred eeecCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCC-CCEEEEEeCCCe
Q 000346 150 KIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPT-LEWLFVGDRRGT 225 (1630)
Q Consensus 150 ~il~gH~~~ItsLafSPdg~-lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPD-g~~LaSgS~DGt 225 (1630)
.......+.|-.++|+|... .++++..||+|+-+|+|.. +++++++. +..|. ++++++. ...+++++.|++
T Consensus 323 ~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS-----gl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 323 GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS-----GLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc-----eEEecCCCCcceeeccccce
Confidence 22222367899999999654 6777889999999999976 89999986 88998 9999984 456888899999
Q ss_pred EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC-EEEEEECCCceEEEEeeee
Q 000346 226 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~-lLaSgS~DGtIrIWDl~~~ 278 (1630)
|++|++....+..+..-.-.-+...|.++.|+-. +++.|+..+.++|||+.+.
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999998665423322111124467778888755 5778888888999998643
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-14 Score=158.18 Aligned_cols=230 Identities=20% Similarity=0.260 Sum_probs=176.2
Q ss_pred CcEEEEEc-------CCCCEEEEEECCe-EEEEECCCCcEEEEEc--CC----CCEEEEEEeCCCCCEEEEEECCCeEEE
Q 000346 23 QPHEAAFH-------PNQALIAVAIGTY-IIEFDTLTGSRIASID--IN----SPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1630)
Q Consensus 23 rV~~LaFS-------PdG~lLasgs~Gt-I~VWDl~tg~~i~tl~--~~----~~VtsVafSpd~g~lLaSgS~DGtIrV 88 (1630)
.|..-+|- |+..++++.+.+. |++||..+|+....+. .| ..-.+++|+|| |..|.+| ...+|++
T Consensus 106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D-GeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD-GEQLFAG-YKRCIRV 183 (406)
T ss_pred EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC-CCeEeec-ccceEEE
Confidence 67777774 6777888888855 9999999999988887 22 34578999999 9988887 5689999
Q ss_pred EEC-CCCcEEEEEcC--CCCeEEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEE
Q 000346 89 CDF-DTEQSFVLHSP--EKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 89 WDl-~tge~~v~fsp--dg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLaf 164 (1630)
||+ +.|+.+-.+.- .++. +-..-.-++.++|... .++.|+... ++-++....+ .+...+.+|.+.|+.+.|
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~--gq~giisc~a~sP~~~~~~a~gsY~q-~~giy~~~~~--~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKF--GQKGIISCFAFSPMDSKTLAVGSYGQ-RVGIYNDDGR--RPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred eeccCCCCCCcchhhhhcccc--cccceeeeeeccCCCCcceeeecccc-eeeeEecCCC--CceeeecccCCCeeeEEe
Confidence 998 55543211110 0111 0011124567788776 788888877 8888887776 788888999999999999
Q ss_pred cCCCCEEEEEe-CCCeEEEEEcCCC-cEEEEEec-----CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC-CCc
Q 000346 165 HPRLPVLYVAY-ADGLIRAYNIHTY-AVHYTLQL-----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-ERP 236 (1630)
Q Consensus 165 SPdg~lLaSgS-~DGtIrIWDl~t~-~~i~tL~~-----~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t-gk~ 236 (1630)
+++|+.|++|+ .|..|-.||++.. ..+..+.. ...| .+...|++++|++|+.||.|++||+++ +.+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI------~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI------LFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE------EEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 99999999998 5778999999954 44444442 2233 567789999999999999999999998 554
Q ss_pred eeEEEeeccCCCeEEEEEeCCCCEEEEEECC
Q 000346 237 SMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 237 ~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D 267 (1630)
+..+..|...|+.++++|--.+++++|..
T Consensus 333 --~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 --VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred --ccccccccccccceecCcccceeeeccCc
Confidence 66677889999999999998999998754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-14 Score=170.68 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=164.3
Q ss_pred cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---------------EEEEcC--CCCeEEeecCCe
Q 000346 53 SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---------------FVLHSP--EKKMESISVDTE 114 (1630)
Q Consensus 53 ~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---------------~v~fsp--dg~~asgs~Dgt 114 (1630)
+..+.+.+| ..|+.+++.+. .+++++|.||++++|+-..++. .++|-+ .++.+.++.|..
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 345667766 88999988765 6899999999999999754433 133332 223366777776
Q ss_pred EEEEE----------------------cCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 000346 115 VHLAL----------------------TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 115 v~L~~----------------------spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLa 172 (1630)
+.++- ..+ ..+++||.|. ++++|-.. .+...+.+|+..|.++..-|++ .++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~-~~~iSgSWD~-TakvW~~~----~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGED-GTLISGSWDS-TAKVWRIG----ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCc-CceEeccccc-ceEEecch----hhhcccCCcchheeeeeecCCC-cEE
Confidence 55442 222 3489999999 99999864 4566689999999999999987 889
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEE
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITS 251 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~Vss 251 (1630)
+||.|.+|++|. .++++++|.+ .+.|+ .+++-+++. +++|+.||.|+.|++ ++++ +..+.+|++-|.+
T Consensus 156 TgsaDKtIklWk--~~~~l~tf~gHtD~VR-----gL~vl~~~~-flScsNDg~Ir~w~~-~ge~--l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 156 TGSADKTIKLWK--GGTLLKTFSGHTDCVR-----GLAVLDDSH-FLSCSNDGSIRLWDL-DGEV--LLEMHGHTNFVYS 224 (745)
T ss_pred eccCcceeeecc--CCchhhhhccchhhee-----eeEEecCCC-eEeecCCceEEEEec-cCce--eeeeeccceEEEE
Confidence 999999999995 4788899987 88888 999988754 779999999999999 5774 8889999999999
Q ss_pred EEEeCCCCEEEEEECCCceEEEEee
Q 000346 252 VAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 252 VsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++...++..|+|+++|++++||+..
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC
Confidence 9988888999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=170.55 Aligned_cols=228 Identities=15% Similarity=0.243 Sum_probs=181.5
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
.|.+++. .+.+|++|+. ++|.+|....++.-..+. ..-++++++|+-+ |+++|.||+|-.|++-+..+......+
T Consensus 58 ~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 58 LVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred eeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheee
Confidence 4445544 4568889888 779999999888765555 4589999999999 999999999999999998665332222
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCC--------CCCeEEEEEcCCCCEEE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL--------KKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH--------~~~ItsLafSPdg~lLa 172 (1630)
-++.....++.++|.+.+|++.+.|| .|++||+.++ .+..++.+- ...+..++|||++..|+
T Consensus 135 -------rgh~apVl~l~~~p~~~fLAvss~dG-~v~iw~~~~~--~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 135 -------RGHDAPVLQLSYDPKGNFLAVSSCDG-KVQIWDLQDG--ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred -------cccCCceeeeeEcCCCCEEEEEecCc-eEEEEEcccc--hhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 24444567889999999999999999 9999999988 555544322 44567899999998899
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCe
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 249 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~V 249 (1630)
+.+.|++|++|+..++...+.+.. ...+. .++|+|+|+|||+++.||.|.|||..+.+ . ......|
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~-----~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~---~~~~~~V 273 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS-----DLQWSPNGKYIAASTLDGQILVWNVDTHE---R---HEFKRAV 273 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceE-----EEEEcCCCcEEeeeccCCcEEEEecccch---h---cccccee
Confidence 999999999999999999988875 33355 99999999999999999999999999733 2 2234689
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEE
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
.+++|.|+.+-|-.-...|+..+|-
T Consensus 274 c~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 274 CCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred EEEecCCCCCeeEEEeeccccccCh
Confidence 9999999998776666666665553
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=171.15 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=193.5
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC----CCEEEEEEeCC-CCCEEEEEECCCeEEEEEC-CCC-
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN----SPVVRMAYSPT-SGHAVVAILEDCTIRSCDF-DTE- 94 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~----~~VtsVafSpd-~g~lLaSgS~DGtIrVWDl-~tg- 94 (1630)
..+.+.|||-.+.++++.+ ..|+|||++.++.+..|..+ ..|+.+.+..+ +..++++|+.||.||||+- .++
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4778999999999999997 77999999999999888832 67999998743 3678999999999999964 232
Q ss_pred ---cEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceee-ecCCCCCeEEEEEcC-CCC
Q 000346 95 ---QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDLKKPIVNLACHP-RLP 169 (1630)
Q Consensus 95 ---e~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~i-l~gH~~~ItsLafSP-dg~ 169 (1630)
+...+|++-.....+..+..+.+.|......++++++-+ .|++||.... .+... -.+....|+++.-+- .|+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-~IRIWDa~~E--~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-SIRIWDAHKE--QVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee-EEEEEecccc--eeEeecccCCCccceeecccccCCc
Confidence 225555543333112222224444555555666666677 9999999877 44433 344466677776654 578
Q ss_pred EEEEEeCCCeEEEEEcCCCcE---EEEEe-cCCc--eeecCcccEEEcCCCC-EEEEEeCCCeEEEEECCCCCceeEEEe
Q 000346 170 VLYVAYADGLIRAYNIHTYAV---HYTLQ-LDNT--IKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIGII 242 (1630)
Q Consensus 170 lLaSgS~DGtIrIWDl~t~~~---i~tL~-~~~~--V~IsGi~sVafSPDg~-~LaSgS~DGtVrVWDl~tgk~~lv~tL 242 (1630)
.++.|..||.|++||.+.... +.... |... |. .+.+.+.|- .|++|+.||.|++||++.....-.-+.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv-----~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV-----HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccce-----eEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence 999999999999999885432 23332 3332 66 888888664 499999999999999997321112222
Q ss_pred eccC---CCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccccccccccccCCcccccCCCe
Q 000346 243 QVGS---QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRV 319 (1630)
Q Consensus 243 ~gH~---~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri 319 (1630)
..|. +.++++..|++...+|+|+. +.|+||++.-... +.+.. ..+-..+.....
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l--------~~~k~--------------n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL--------NIIKY--------------NPGFMGQRIGSV 1354 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh--------ccccc--------------CcccccCcCCCc
Confidence 2333 35899999999999999998 9999999873222 00010 011111334555
Q ss_pred EEEEeCCCCCceeEe
Q 000346 320 RALEVHPRLNLAVLL 334 (1630)
Q Consensus 320 ~~v~~HPk~Nl~Alv 334 (1630)
.+++|||..-+.|..
T Consensus 1355 scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAG 1369 (1387)
T ss_pred ceeeecchhHhhhhc
Confidence 789999998777744
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=160.99 Aligned_cols=242 Identities=19% Similarity=0.217 Sum_probs=176.1
Q ss_pred EEEEcCCCCEEEEEEC--Ce--EEEEECCCCcEEEEEcCC-----CCEEEEEEeCC------CCCEEEEEECCCeEEEEE
Q 000346 26 EAAFHPNQALIAVAIG--TY--IIEFDTLTGSRIASIDIN-----SPVVRMAYSPT------SGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~--Gt--I~VWDl~tg~~i~tl~~~-----~~VtsVafSpd------~g~lLaSgS~DGtIrVWD 90 (1630)
-+..-|+.++++++-. +. +.+|=++..+.- .+-|| ....|+.|... .|+++|.|+-|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 4555677777877765 22 555554433322 22233 34467777532 368999999999999999
Q ss_pred CCCCcE---EEEEcCC--------CCe---EEeecCCeEEEEEcCC-CCEEEEEecCCcEEEEEEcccCCccceeeecCC
Q 000346 91 FDTEQS---FVLHSPE--------KKM---ESISVDTEVHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL 155 (1630)
Q Consensus 91 l~tge~---~v~fspd--------g~~---asgs~Dgtv~L~~spd-g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH 155 (1630)
++-... ++..-.. ++. .+++.|-...+.+... .+.|++|+.|. +|++||+.++ +|..++..|
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~-TV~lWD~~~g--~p~~s~~~~ 285 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK-TVKLWDVDTG--KPKSSITHH 285 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc-eEEEEEcCCC--Ccceehhhc
Confidence 864332 2222210 011 2334443344444333 36899999999 9999999999 899999999
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-cEEEEEecCCceeecCcccEEEcCCC-CEEEEEeCCCeEEEEECC
Q 000346 156 KKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTY-AVHYTLQLDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVS 232 (1630)
Q Consensus 156 ~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~-~~i~tL~~~~~V~IsGi~sVafSPDg-~~LaSgS~DGtVrVWDl~ 232 (1630)
.+.|.++.||| ....|++|+.|++|.+.|.|.. ..-..++..+.|. .++|+|.. ..++++++||+|+-+|++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE-----kv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE-----KVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE-----EEEecCCCceeEEEecCCceEEeeecC
Confidence 99999999999 4568999999999999999943 2223333467787 89999955 567788899999999999
Q ss_pred CC-CceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeeee
Q 000346 233 IE-RPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 233 tg-k~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~~ 278 (1630)
.. ++ +.++..|...|++++++.. -.+++|+|.|+.|++|++...
T Consensus 361 ~~~~~--vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 361 NPGKP--VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred CCCCc--eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 75 54 8999999999999999875 457899999999999998743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=162.00 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=184.6
Q ss_pred CCcEEEEEcCCCC-EEEEEEC-CeEEEEECCCCcEEEEEc--CC--CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc
Q 000346 22 LQPHEAAFHPNQA-LIAVAIG-TYIIEFDTLTGSRIASID--IN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ 95 (1630)
Q Consensus 22 ~rV~~LaFSPdG~-lLasgs~-GtI~VWDl~tg~~i~tl~--~~--~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge 95 (1630)
+.|.+.+|+|+|. .+++++. ..+..||+.+.+..+.-. +. ..+.....+++ +++|+..+..|.|.+....|++
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhh
Confidence 4788999999999 7777777 559999999887654433 33 46888889999 9999999999999999988887
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCC-CCeEEEEEcCCCCEEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLK-KPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~-~~ItsLafSPdg~lLaSg 174 (1630)
....+.-.|.. ..+.|+.++..|+.++.++ .|.+||+... .|+..+.... -.-++++.++++.+||+|
T Consensus 337 li~s~KieG~v--------~~~~fsSdsk~l~~~~~~G-eV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 337 LITSFKIEGVV--------SDFTFSSDSKELLASGGTG-EVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred hhheeeeccEE--------eeEEEecCCcEEEEEcCCc-eEEEEecCCc--ceEEEEeecCccceeeeeecCCCceEEec
Confidence 75555533332 2345667778888888899 9999999988 7887776432 223678888999999999
Q ss_pred eCCCeEEEEEcCC------CcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeC--CCeEEEEECCCCCceeEEEee--
Q 000346 175 YADGLIRAYNIHT------YAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDR--RGTLLAWDVSIERPSMIGIIQ-- 243 (1630)
Q Consensus 175 S~DGtIrIWDl~t------~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~--DGtVrVWDl~tgk~~lv~tL~-- 243 (1630)
|..|.|-|||..+ .+++.++.. ...|+ +++|++|.+.|+.+|. +..+++-.+.+.. +...+.
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It-----sl~Fn~d~qiLAiaS~~~knalrLVHvPS~T--VFsNfP~~ 478 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT-----SLQFNHDAQILAIASRVKKNALRLVHVPSCT--VFSNFPTS 478 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeee-----eeeeCcchhhhhhhhhccccceEEEecccee--eeccCCCC
Confidence 9999999999663 355666555 66677 9999999999998885 6789988887543 122222
Q ss_pred -ccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 244 -VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 244 -gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..-+.|+|++|+|.|.++|.|.++|.|.+|.+.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 223679999999999999999999999999874
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-13 Score=148.91 Aligned_cols=208 Identities=17% Similarity=0.237 Sum_probs=152.3
Q ss_pred EEc-CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----EEEEcCCCCeEEeecCCeEEE-EEcCC-CCEEEE
Q 000346 57 SID-IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----FVLHSPEKKMESISVDTEVHL-ALTPL-QPVVFF 128 (1630)
Q Consensus 57 tl~-~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----~v~fspdg~~asgs~Dgtv~L-~~spd-g~~LaS 128 (1630)
.+. +| .-|+++.|... |+.+|+|+.|++|+|||.+.... .-.|. ++....+++ |.+|. |+.+++
T Consensus 7 pi~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-------ah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-------AHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred ccccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEE-------ecCCcEEEEEecCccccceEEE
Confidence 344 44 77999999999 99999999999999999754322 22222 223333444 55665 689999
Q ss_pred EecCCcEEEEEEcccCC-------ccceeeecCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCC------cEEEE
Q 000346 129 GFHRRMSVTVVGTVEGG-------RAPTKIKTDLKKPIVNLACHP--RLPVLYVAYADGLIRAYNIHTY------AVHYT 193 (1630)
Q Consensus 129 gs~Dg~tI~IwDl~sg~-------~~~i~il~gH~~~ItsLafSP--dg~lLaSgS~DGtIrIWDl~t~------~~i~t 193 (1630)
++.|+ ++.+|.-.... .....++......|+.+.|.| -|-.+++++.||++|||+.-.. .+...
T Consensus 79 cS~Dr-tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 79 CSYDR-TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EecCC-ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 99999 99999873221 123455667788999999999 4668999999999999986533 23333
Q ss_pred Ee--------cCCceeecCcccEEEcC---CCCEEEEEeCC-----CeEEEEECCCC--CceeEEEeeccCCCeEEEEEe
Q 000346 194 LQ--------LDNTIKLLGAGAFAFHP---TLEWLFVGDRR-----GTLLAWDVSIE--RPSMIGIIQVGSQPITSVAWL 255 (1630)
Q Consensus 194 L~--------~~~~V~IsGi~sVafSP---Dg~~LaSgS~D-----GtVrVWDl~tg--k~~lv~tL~gH~~~VssVsfS 255 (1630)
++ ...... |+.|+| ..++|++|+++ +.++||..... +...+.++.+|..+|++++|.
T Consensus 158 i~~~~~pp~~~~~~~~-----CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCF-----CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhccCCcccccCcce-----EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 32 122333 899998 34788998876 57899977653 444567888999999999999
Q ss_pred CC----CCEEEEEECCCceEEEEeeeec
Q 000346 256 PM----LRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 256 Pd----G~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
|+ -.+||+++.|| |+||++....
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeecc
Confidence 95 34799999999 9999998533
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=145.40 Aligned_cols=243 Identities=13% Similarity=0.162 Sum_probs=174.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCC---------Cc-EEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLT---------GS-RIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~t---------g~-~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
.|.+-+|+|.+++|++|.. |.|-++.+.+ ++ .+...+ |+++|+.++|+.+ +|++|++ |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccC-ceEEEee
Confidence 3556689999999999998 9999998752 22 233445 4499999999854 7777754 9999998
Q ss_pred CCCCcEEE----EEcCCCCe-E-EeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEE
Q 000346 91 FDTEQSFV----LHSPEKKM-E-SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 91 l~tge~~v----~fspdg~~-a-sgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLaf 164 (1630)
++....+. .|.-.... . +.-.-.+-.+|..|..+-+++++.|+ .++.||+++| +....+++|+.+|.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G--~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDG--RIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCC--EEEEEEcCCcceeeeeee
Confidence 76543311 11111111 0 11111235678888888888888999 9999999999 889999999999999998
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceee---cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEE
Q 000346 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKL---LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240 (1630)
Q Consensus 165 SPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~I---sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~ 240 (1630)
......+++|+.||++|+||.++++++.++.. .+.-.+ .|.+-.+..-+..||++|+ .-.+.+|++++.++.++.
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEE
Confidence 66667899999999999999999999999874 211100 0111123344556888776 567899999999875555
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 241 tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
.+.+ .|..+.|..| .++++++.+.|.-|.++-.
T Consensus 244 pipa---~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 244 PIPA---RVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred eccc---ceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 5554 5677777654 7888888889999988743
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=159.65 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=183.1
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECC-CCcEEEE--EcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTL-TGSRIAS--IDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ 95 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~-tg~~i~t--l~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge 95 (1630)
....++.-|+|++..+++-+. |..++|-.. ...+... +.+| ..|++++|+|. |.+|++.|.|.+-|+|-.-..+
T Consensus 316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCC-CCEEEEeccccceeeecccccc
Confidence 446899999999998888888 889999833 2333332 3366 99999999999 9999999999999997543111
Q ss_pred E----------------EEEEcCC-CCeEEeecCCe--------------------------------------------
Q 000346 96 S----------------FVLHSPE-KKMESISVDTE-------------------------------------------- 114 (1630)
Q Consensus 96 ~----------------~v~fspd-g~~asgs~Dgt-------------------------------------------- 114 (1630)
. |+.+-+. -+++++.....
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 0 2222221 11121111111
Q ss_pred ------------------------------------------------------EEEEEcCCCCEEEEEecCC----cEE
Q 000346 115 ------------------------------------------------------VHLALTPLQPVVFFGFHRR----MSV 136 (1630)
Q Consensus 115 ------------------------------------------------------v~L~~spdg~~LaSgs~Dg----~tI 136 (1630)
..+..+|+++.+++++... ..|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 5666789999999987543 368
Q ss_pred EEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-EEEE---Ee-cCCceeecCcccEEEc
Q 000346 137 TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYA-VHYT---LQ-LDNTIKLLGAGAFAFH 211 (1630)
Q Consensus 137 ~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~-~i~t---L~-~~~~V~IsGi~sVafS 211 (1630)
++|++.+- ...+.+.+|+-.|+.++||||+++|++.|.|+++.+|...... .-.. .+ |..-|+ .+.|+
T Consensus 555 ~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIW-----dcsW~ 627 (764)
T KOG1063|consen 555 RLWNTANW--LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIW-----DCSWS 627 (764)
T ss_pred EEEeccch--hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEE-----EcccC
Confidence 99998765 6677899999999999999999999999999999999864321 1111 12 356677 99999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC--CceeEEEeeccCCCeEEEEEeC-----CCCEEEEEECCCceEEEEee
Q 000346 212 PTLEWLFVGDRRGTLLAWDVSIE--RPSMIGIIQVGSQPITSVAWLP-----MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 212 PDg~~LaSgS~DGtVrVWDl~tg--k~~lv~tL~gH~~~VssVsfSP-----dG~lLaSgS~DGtIrIWDl~ 276 (1630)
|++.+++|+|+|.+|+||..... +.........++..|+.++|.| .+..++.|-+.|.|.+|...
T Consensus 628 pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 628 PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999999999999999988876 3311113446789999999987 23478899999999999865
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-12 Score=144.65 Aligned_cols=238 Identities=23% Similarity=0.337 Sum_probs=186.8
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc-EEEEEcC-CC-CEEEEEE-eCCCCC-EEEEEEC-CCeEEEEECCC-
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS-RIASIDI-NS-PVVRMAY-SPTSGH-AVVAILE-DCTIRSCDFDT- 93 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~-~i~tl~~-~~-~VtsVaf-Spd~g~-lLaSgS~-DGtIrVWDl~t- 93 (1630)
..+.++.|++.+..++.++. +.+.+|+...+. .+..+.. +. .+..+.+ +++ +. .++..+. |+.+++|+...
T Consensus 66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEEEEEecCC
Confidence 38999999999999999886 779999999887 6667764 33 7888888 777 55 5555455 99999999876
Q ss_pred CcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEec-CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCC-EE
Q 000346 94 EQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH-RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VL 171 (1630)
Q Consensus 94 ge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~-Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~-lL 171 (1630)
......+. .+.+....+.+++++..+++++. ++ .+++|+...+ .....+.+|...|.+++|+|++. .+
T Consensus 145 ~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 145 GKLIRTLE-------GHSESVTSLAFSPDGKLLASGSSLDG-TIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred CeEEEEEe-------cCcccEEEEEECCCCCEEEecCCCCC-ceEEEEcCCC--ceEEeeccCCCceEEEEEcCCcceEE
Confidence 33222222 22333346888999988888875 88 9999999886 77888888999999999999998 55
Q ss_pred EEEeCCCeEEEEEcCCCcEEE-EEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCe
Q 000346 172 YVAYADGLIRAYNIHTYAVHY-TLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 249 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~~i~-tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~V 249 (1630)
++++.|+.|++||...+.... .+.. ..... . .|+|++.++++++.|+.+++||...... ....+.+|...|
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v 287 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-----S-SFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSV 287 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCccee-----E-eECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccE
Confidence 655899999999988777776 4443 22212 2 7999998899999999999999997654 233347889999
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
.++.|+|++..+++++.|+.+++|+...
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 9999999989888899999999997653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-12 Score=156.07 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=189.0
Q ss_pred CCcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
..|-+++|++.++++-++..|.|.-||+.+++....++.. +.|++++.+|. +..++.|++||.+..++...++....-
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEEEEe
Confidence 4899999998777777777799999999999999999854 89999999999 899999999998888887766542111
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceee----ecC----CCCCeEEEEEcCCCCEEE
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI----KTD----LKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~i----l~g----H~~~ItsLafSPdg~lLa 172 (1630)
+-. --.....++.|++++..++.|+.|+ .|++||..+++ ...+ +.+ ...-|.++.|- ....|+
T Consensus 149 ~l~-----rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~--t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~ 219 (691)
T KOG2048|consen 149 SLM-----RQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQ--TLHIITMQLDRLSKREPTIVWSVLFL-RDSTIA 219 (691)
T ss_pred ecc-----cccceEEEEEecCCccEEEecccCc-eEEEEEcCCCc--eEEEeeecccccccCCceEEEEEEEe-ecCcEE
Confidence 100 0122447788999999999999999 99999999884 2221 111 12345677766 445789
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc-ee-EEEeeccCCCe
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SM-IGIIQVGSQPI 249 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~-~l-v~tL~gH~~~V 249 (1630)
+|..-|+|++||...+..++.+.. ...|. +++..+++.++++++.|+.|.-|...+... ++ ......|...|
T Consensus 220 sgDS~G~V~FWd~~~gTLiqS~~~h~adVl-----~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 220 SGDSAGTVTFWDSIFGTLIQSHSCHDADVL-----ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred EecCCceEEEEcccCcchhhhhhhhhccee-----EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 999999999999999999888876 88888 999999999999999999999998776532 12 23445788899
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
.+++..++ .+++|+.|.++.+-..+.
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccc
Confidence 99999887 899999999998776654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-11 Score=146.92 Aligned_cols=244 Identities=11% Similarity=0.140 Sum_probs=161.6
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECC-CCcE--EEEEcCCCCEEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCc-
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTL-TGSR--IASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFDTEQ- 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~-tg~~--i~tl~~~~~VtsVafSpd~g~lLaSgS-~DGtIrVWDl~tge- 95 (1630)
.+..++++|++++|++++. +.|.+|++. ++.. +......+....++|+|+ ++++++++ .++.|.+|++++..
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECCCCC
Confidence 5778999999999988876 669999997 3443 222333346778999999 88777766 48999999986432
Q ss_pred E--EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcccee-----eecCCCCCeEEEEEcCCC
Q 000346 96 S--FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK-----IKTDLKKPIVNLACHPRL 168 (1630)
Q Consensus 96 ~--~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~-----il~gH~~~ItsLafSPdg 168 (1630)
. .+... .+..+...+.++|++.++++++.....|.+||+.+.. .... ...........++|+|++
T Consensus 115 ~~~~~~~~-------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~~~~~~pdg 186 (330)
T PRK11028 115 PVAPIQII-------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPRHMVFHPNQ 186 (330)
T ss_pred CCCceeec-------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC-cccccCCCceecCCCCCCceEEECCCC
Confidence 1 11100 0111234566899998887666553399999997642 2210 001112346789999999
Q ss_pred CEEEEEeC-CCeEEEEEcCC--Cc--EEEEEec-CCcee-ecCcccEEEcCCCCEEEEEeC-CCeEEEEECCCCCc--ee
Q 000346 169 PVLYVAYA-DGLIRAYNIHT--YA--VHYTLQL-DNTIK-LLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIERP--SM 238 (1630)
Q Consensus 169 ~lLaSgS~-DGtIrIWDl~t--~~--~i~tL~~-~~~V~-IsGi~sVafSPDg~~LaSgS~-DGtVrVWDl~tgk~--~l 238 (1630)
+++++++. +++|.+||+.. ++ .+..+.. ..... ......+.++|++++++++.. ++.|.+|++..... .+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 99988875 89999999973 32 2333321 11100 000115889999999999864 78999999965421 12
Q ss_pred EEEeeccCCCeEEEEEeCCCCEEEEEEC-CCceEEEEee
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVTLCR-DGSLQVWKTR 276 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~lLaSgS~-DGtIrIWDl~ 276 (1630)
+...... ...+.+.++|+|++|++++. +++|.+|+++
T Consensus 267 ~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 267 EGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2222221 34568999999999987775 8999999886
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=155.39 Aligned_cols=210 Identities=14% Similarity=0.183 Sum_probs=156.9
Q ss_pred cEEEEEc-CCCCEEEEEEeCCCC-CEEEEEECCCeEEEEECCCCcE----EEEEcCCCCeEEeecCCeEEEEEcCCC-CE
Q 000346 53 SRIASID-INSPVVRMAYSPTSG-HAVVAILEDCTIRSCDFDTEQS----FVLHSPEKKMESISVDTEVHLALTPLQ-PV 125 (1630)
Q Consensus 53 ~~i~tl~-~~~~VtsVafSpd~g-~lLaSgS~DGtIrVWDl~tge~----~v~fspdg~~asgs~Dgtv~L~~spdg-~~ 125 (1630)
.....+. +.++|++++|+|... +++++|+.-|.|-+||+.+.+. ...|.+.+ ...-.+.++|.. ..
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-------~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-------GPVSGLKFSPANTSQ 249 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-------ccccceEecCCChhh
Confidence 3344455 348999999999844 6888888999999999964432 44455432 233456777765 58
Q ss_pred EEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcE-EEEEe-cCCceeec
Q 000346 126 VFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV-HYTLQ-LDNTIKLL 203 (1630)
Q Consensus 126 LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~-i~tL~-~~~~V~Is 203 (1630)
+++.+.|| +|++-|+...-...+.........+.++.|+.+...++.+..=|...+||+++... ...+. +...|.
T Consensus 250 i~ssSyDG-tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~-- 326 (498)
T KOG4328|consen 250 IYSSSYDG-TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT-- 326 (498)
T ss_pred eeeeccCc-eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc--
Confidence 99999999 99999998773222333333456678888988777777777667999999998765 33333 366787
Q ss_pred CcccEEEcCCC-CEEEEEeCCCeEEEEECCCC--Cce-eEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 204 GAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIE--RPS-MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 204 Gi~sVafSPDg-~~LaSgS~DGtVrVWDl~tg--k~~-lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+++++|-. .+|++++.|++++|||++.- +.. ++ ....|...|.++.|||++..|+|.+.|..|+|||..
T Consensus 327 ---sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 327 ---SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ---eeecCCCCchheeecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99999954 56889999999999999863 221 23 344689999999999998889999999999999985
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-11 Score=141.94 Aligned_cols=202 Identities=10% Similarity=0.122 Sum_probs=135.9
Q ss_pred CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCe-EEeecCCeEEEEEcCCCCEEEEEecCCcEEEE
Q 000346 60 INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM-ESISVDTEVHLALTPLQPVVFFGFHRRMSVTV 138 (1630)
Q Consensus 60 ~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~-asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~I 138 (1630)
+...|.++.|+.+ ...+.+++++..+.-||+.+....+.--|+.-. ..-+ -+.+..--......++.+++|+ .+.+
T Consensus 13 ~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DG-kf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDG-RFVI 89 (737)
T ss_pred cceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCc-eEEE
Confidence 3356778999887 566655555444445555444332222222111 0000 0001101112235677788888 6666
Q ss_pred EEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEE
Q 000346 139 VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWL 217 (1630)
Q Consensus 139 wDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~L 217 (1630)
.+- .+ ...+....|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.. ...|. |++|.|+..-+
T Consensus 90 l~k-~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~-----c~~W~p~S~~v 160 (737)
T KOG1524|consen 90 LNK-SA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR-----CARWAPNSNSI 160 (737)
T ss_pred ecc-cc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeE-----EEEECCCCCce
Confidence 653 23 56667788999999999999999999999999999997 56655555554 67787 99999988766
Q ss_pred EEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 218 FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 218 aSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+.+. .+.+.|=-+..... +-..+.|.+-|.++.|++..++|++|++|-..+|||.-
T Consensus 161 l~c~-g~h~~IKpL~~n~k--~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 161 VFCQ-GGHISIKPLAANSK--IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEec-CCeEEEeecccccc--eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 6554 34455545554432 55678999999999999999999999999999999964
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=148.31 Aligned_cols=205 Identities=14% Similarity=0.144 Sum_probs=156.9
Q ss_pred CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----------EEEEcCCCCeEEeecCCeEEEE-----------
Q 000346 61 NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----------FVLHSPEKKMESISVDTEVHLA----------- 118 (1630)
Q Consensus 61 ~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-----------~v~fspdg~~asgs~Dgtv~L~----------- 118 (1630)
...|.+|.|+|. ++.|+++++||++++||+...+. +.+|.++.+.++++.|+.++..
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 378999999988 78888888999999999977644 5667665555777777764443
Q ss_pred ----------EcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 000346 119 ----------LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188 (1630)
Q Consensus 119 ----------~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~ 188 (1630)
..+....+++|+.|+ +|++||.+.. .+...+.. ...|.++..+ ++.|++|+.|..|.+||+++.
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~-~ik~wD~R~~--~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDK-TIKFWDPRNK--VVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCc-cEEEEecccc--cccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 344556789999999 9999999864 34444432 4478887774 778999999999999999987
Q ss_pred cEEEEEec---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc--eeEEEeeccC---------CCeEEEEE
Q 000346 189 AVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP--SMIGIIQVGS---------QPITSVAW 254 (1630)
Q Consensus 189 ~~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~--~lv~tL~gH~---------~~VssVsf 254 (1630)
....+... .-.++ ++++.|++.=.++++-||.|.+=.+...++ .....++.|. .+|++++|
T Consensus 166 ~~~~q~reS~lkyqtR-----~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTR-----CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred cchhhhccccceeEEE-----EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 65443322 55677 999999888899999999998866655411 1134566665 57999999
Q ss_pred eCCCCEEEEEECCCceEEEEeee
Q 000346 255 LPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 255 SPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
||--..|+||+.||.|.+||...
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred ccccceEEecCCCceEEEccCcc
Confidence 99989999999999999999863
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=150.10 Aligned_cols=242 Identities=12% Similarity=0.155 Sum_probs=179.1
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
.|+|+.|..+++ |.+|.. |.|++|++.+.+....++ ++ ..|+.+.-.|+ ..+.+-+.|+.+.+|++.-+..
T Consensus 16 ~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia~s~~i~i 92 (323)
T KOG0322|consen 16 SVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIAYSAFISI 92 (323)
T ss_pred hheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEccCcceEEE
Confidence 689999988776 777777 999999999999888888 44 78999999886 5677888999999999876432
Q ss_pred -----------EEEEcCCCCe---EEee----cCC------------------------e-EEE-EEcCCCC--EEEEEe
Q 000346 97 -----------FVLHSPEKKM---ESIS----VDT------------------------E-VHL-ALTPLQP--VVFFGF 130 (1630)
Q Consensus 97 -----------~v~fspdg~~---asgs----~Dg------------------------t-v~L-~~spdg~--~LaSgs 130 (1630)
-..+++.++. .... .+. . .+. +.+.++. .++.|-
T Consensus 93 ~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGy 172 (323)
T KOG0322|consen 93 HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGY 172 (323)
T ss_pred eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEec
Confidence 1111111111 0000 000 0 111 2233333 456677
Q ss_pred cCCcEEEEEEcccCC--------ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--cEE--EEEec-C
Q 000346 131 HRRMSVTVVGTVEGG--------RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--AVH--YTLQL-D 197 (1630)
Q Consensus 131 ~Dg~tI~IwDl~sg~--------~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~--~~i--~tL~~-~ 197 (1630)
.++ .|.+||+.++. .+.......|..+|+++.+.+.-..=++|+.+..+..|++... .+. ..+.. .
T Consensus 173 Esg-hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 173 ESG-HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred cCC-eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 788 99999998862 1223334678999999999886556677888888999987633 221 11111 3
Q ss_pred CceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEe
Q 000346 198 NTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 198 ~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
..|. .+..-||++.+++++.|+.||||..++..+ +..+.-|...|.+++|+|+..++|++|.|++|.+|++
T Consensus 252 pGv~-----gvrIRpD~KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 252 PGVS-----GVRIRPDGKILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCcc-----ceEEccCCcEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3444 889999999999999999999999999997 7889999999999999999999999999999999986
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=148.05 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=139.4
Q ss_pred CCCCcEEEEEcCCCC--EEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc
Q 000346 20 KPLQPHEAAFHPNQA--LIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ 95 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~--lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge 95 (1630)
+...|+++.|.++-. +|++|++ |.|.+|+....+++.+++.| +.|+.++.+|. +.+-++.+.|+.++.||+-+|+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcCc
Confidence 344899999999775 8888888 88999999999999999965 88999999999 9999999999999999998886
Q ss_pred E-----------EEEEcCCCCe-EEeecCCe-------------------EEEEEcCCCCEEEEEecCCcEEEEEEcccC
Q 000346 96 S-----------FVLHSPEKKM-ESISVDTE-------------------VHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 96 ~-----------~v~fspdg~~-asgs~Dgt-------------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg 144 (1630)
. .+.|+|.|.. +.+..+.. ..+...-++..+++|.+++ .|++||....
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~-~i~~~D~ds~ 239 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNE-WISLKDTDSD 239 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCc-eEEEeccCCC
Confidence 5 7889999986 44444332 1122233567899999999 9999999887
Q ss_pred CccceeeecCCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEEcCCC
Q 000346 145 GRAPTKIKTDLKKPIVNLAC--HPRLPVLYVAYADGLIRAYNIHTY 188 (1630)
Q Consensus 145 ~~~~i~il~gH~~~ItsLaf--SPdg~lLaSgS~DGtIrIWDl~t~ 188 (1630)
.+...+.+|...|.++.+ +|++.+|+++|.||.|+|||++..
T Consensus 240 --~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 --TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 899999999999999984 467889999999999999999865
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=163.28 Aligned_cols=244 Identities=16% Similarity=0.142 Sum_probs=180.0
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCC--------CcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLT--------GSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~t--------g~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
-|+.+.|+|..+.|++++. +.+++|+++. -+.+.+|.+| ++|.|+++.++ ++.+.+|+.||+|+.|++.
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccC
Confidence 5788999999999999999 7799999932 2457777855 99999999999 9999999999999999775
Q ss_pred CCcE-EEEEcCCCC-e-EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCC
Q 000346 93 TEQS-FVLHSPEKK-M-ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1630)
Q Consensus 93 tge~-~v~fspdg~-~-asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~ 169 (1630)
...- .-.+.|..- . +.|+.|..+.+..+.....|++++.|+ +++.|+..... .|......-.+.-.++.+-....
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg-Tvr~w~~~~~~-~~~f~~~~e~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG-TVRLWEPTEES-PCTFGEPKEHGYPLSVDRTSSRP 452 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc-eEEeeccCCcC-ccccCCccccCCcceEeeccchh
Confidence 2211 111111111 1 567888888999999999999999999 99999988774 32222222233445555543221
Q ss_pred -EEEEEeCCCeEEEEEcCCCcEEEEEec--------CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEE
Q 000346 170 -VLYVAYADGLIRAYNIHTYAVHYTLQL--------DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG 240 (1630)
Q Consensus 170 -lLaSgS~DGtIrIWDl~t~~~i~tL~~--------~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~ 240 (1630)
+.++...-+.-.++|......+..+.. ...++ .+.++|.+.+.+++..|+.|+++|..+++. +.
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in-----~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~--l~ 525 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN-----KVVSHPTADITFTAHEDRSIRFFDNKTGKI--LH 525 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc-----eEEecCCCCeeEecccCCceeccccccccc--ch
Confidence 222222222223334444444444432 12344 889999999999999999999999999985 78
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 241 IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 241 tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
....|...++++++.|+|.+|++++.|+.+++|.+.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 888999999999999999999999999999999875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=159.25 Aligned_cols=118 Identities=25% Similarity=0.431 Sum_probs=99.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCc-------EEEEEec-CCceeecCcccEEEcC-CCCEEEEEeCCCe
Q 000346 156 KKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYA-------VHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGDRRGT 225 (1630)
Q Consensus 156 ~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~~-------~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS~DGt 225 (1630)
...|+.+.|+| |...|+++++||.|++|.+..+. ....+.. ...|. ++.||| -...|++++.|.+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-----slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-----SLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-----EEEecchhhhHhhhhhccce
Confidence 45689999999 77789999999999999987542 2333333 45555 999999 4578999999999
Q ss_pred EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 226 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
|++||+.+.+. ...+.+|+..|.+++|+|+|+.+++.+.||+|+||+-+....
T Consensus 702 i~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 702 IELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred eeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 99999999874 556899999999999999999999999999999998775443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-13 Score=147.50 Aligned_cols=239 Identities=14% Similarity=0.136 Sum_probs=172.4
Q ss_pred CCCcEEEEEcCCCCEE-EEEECC-------e-EEEEECCC---------CcEEEEEc--CCCCEEEEEEeCCCCCEEEEE
Q 000346 21 PLQPHEAAFHPNQALI-AVAIGT-------Y-IIEFDTLT---------GSRIASID--INSPVVRMAYSPTSGHAVVAI 80 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lL-asgs~G-------t-I~VWDl~t---------g~~i~tl~--~~~~VtsVafSpd~g~lLaSg 80 (1630)
+..|+.++-+|..+.+ +++..+ + +.||.+.. -+++..+. +.+.|.|+.|.|+ +..+++-
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-s~klasm 141 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-SDKLASM 141 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-CCeeEEe
Confidence 4478899999965544 443321 1 78998752 24455565 3489999999998 8888877
Q ss_pred ECCCeEEEEECCCCcEEE--EEcC---CCCe-EEeecCCeEEEEE-cCCCCEEEEEecCCcEEEEEEcccCCccceeeec
Q 000346 81 LEDCTIRSCDFDTEQSFV--LHSP---EKKM-ESISVDTEVHLAL-TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1630)
Q Consensus 81 S~DGtIrVWDl~tge~~v--~fsp---dg~~-asgs~Dgtv~L~~-spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~ 153 (1630)
. |..|.+|+++.+...+ ..++ .++. .+++ -|. +.+++.+++. .++ ++..||+++.+ +...+-.
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg------~WspHHdgnqv~tt-~d~-tl~~~D~RT~~-~~~sI~d 211 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG------AWSPHHDGNQVATT-SDS-TLQFWDLRTMK-KNNSIED 211 (370)
T ss_pred c-cCceEEEEcccCcchheeecccccccccceeccc------ccCCCCccceEEEe-CCC-cEEEEEccchh-hhcchhh
Confidence 5 8899999998775511 1111 1111 1111 122 3466666554 455 79999999875 5566667
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCC-CcEEEEEec-CCceeecCcccEEEcC-CCCEEEEEeCCCeEEEE
Q 000346 154 DLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHT-YAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAW 229 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~-lLaSgS~DGtIrIWDl~t-~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~LaSgS~DGtVrVW 229 (1630)
.|...|..+.|+|+.. +|++|++||.|+|||.+. ..+++++.+ ..+|+ ++.|+| ..++|++|+.|..|.+|
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW-----~VRfn~~hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW-----AVRFNPEHDQLILSGGSDSAVNLS 286 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEE-----EEEecCccceEEEecCCCceeEEE
Confidence 8999999999999765 688999999999999985 456778876 89999 999999 45788899999999999
Q ss_pred ECCCCC------------------------c---eeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEe
Q 000346 230 DVSIER------------------------P---SMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 230 Dl~tgk------------------------~---~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl 275 (1630)
...+-. + ..+.++..|...|.+++|+.- --++|+-|.||.+.|=++
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 653210 0 124577889999999999874 446889999999977544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=152.83 Aligned_cols=229 Identities=16% Similarity=0.219 Sum_probs=159.8
Q ss_pred CEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCC-CCCEEEEEECCCeEEEEECCCCcE--EEEEcCCCCeEE
Q 000346 34 ALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQS--FVLHSPEKKMES 108 (1630)
Q Consensus 34 ~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd-~g~lLaSgS~DGtIrVWDl~tge~--~v~fspdg~~as 108 (1630)
..+|++.. |.|++||..+++.+..++++ ..++.++|... ..+.+.+|+.||+|++||+++... .+.|..+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~-- 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT-- 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC--
Confidence 45666666 88999999999999999966 88899999863 478999999999999999987654 2333222100
Q ss_pred eecCCeEEEEEcCCCCEEEEEe----cCCcEEEEEEcccCCcc-ceeeecCCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 000346 109 ISVDTEVHLALTPLQPVVFFGF----HRRMSVTVVGTVEGGRA-PTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRA 182 (1630)
Q Consensus 109 gs~Dgtv~L~~spdg~~LaSgs----~Dg~tI~IwDl~sg~~~-~i~il~gH~~~ItsLafSP-dg~lLaSgS~DGtIrI 182 (1630)
.-+++...-.++.+++|. .+. .|.+||++... + .......|...|+++.||| +.++|++||.||.|.+
T Consensus 119 ----~f~~ld~nck~~ii~~GtE~~~s~A-~v~lwDvR~~q-q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 119 ----PFICLDLNCKKNIIACGTELTRSDA-SVVLWDVRSEQ-QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred ----cceEeeccCcCCeEEeccccccCce-EEEEEEecccc-chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 012222222344555543 234 79999999885 4 3344578999999999999 5579999999999999
Q ss_pred EEcCCC----cEEEEEecCCceeecCcccEEEcCCC-CEEEEEeCCCeEEEEECCCCCce--------------------
Q 000346 183 YNIHTY----AVHYTLQLDNTIKLLGAGAFAFHPTL-EWLFVGDRRGTLLAWDVSIERPS-------------------- 237 (1630)
Q Consensus 183 WDl~t~----~~i~tL~~~~~V~IsGi~sVafSPDg-~~LaSgS~DGtVrVWDl~tgk~~-------------------- 237 (1630)
||+... .++.++.+...|. ++.|+.++ +.|.+-+...+..+|++..+.+.
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~-----~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIH-----LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred eecCCCcchhhHHHhhcccceee-----eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 998743 2333444445555 67777655 33666666677777766543210
Q ss_pred ---------------------------------------eEEEeec-cCCCeEEEEEeCCCCEEEEEECCCceEEEEe
Q 000346 238 ---------------------------------------MIGIIQV-GSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 238 ---------------------------------------lv~tL~g-H~~~VssVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
-+..+.+ |...|+++.|.-.+.++.||++||.+.+|..
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 0112223 4456777788878889999999999999986
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=147.39 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=173.0
Q ss_pred CCcEEEEEcC-----CCCEEEEEEC---C-eEEEEEC-CCCcEEEEE---cCC-CCEEEEEEeCCCCCEEEEEECCCeEE
Q 000346 22 LQPHEAAFHP-----NQALIAVAIG---T-YIIEFDT-LTGSRIASI---DIN-SPVVRMAYSPTSGHAVVAILEDCTIR 87 (1630)
Q Consensus 22 ~rV~~LaFSP-----dG~lLasgs~---G-tI~VWDl-~tg~~i~tl---~~~-~~VtsVafSpd~g~lLaSgS~DGtIr 87 (1630)
.+|+.++|.. +.++|++... | ...+.-+ .+|+.-..+ .+| ++|..++|+|.+.+.||+||+|.+|.
T Consensus 28 IrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~ 107 (472)
T KOG0303|consen 28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVM 107 (472)
T ss_pred eeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEE
Confidence 4677777753 3455555333 2 2333222 345443333 355 99999999998789999999999999
Q ss_pred EEECCCCcEEEEEcCCCCe--EEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEE
Q 000346 88 SCDFDTEQSFVLHSPEKKM--ESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 88 VWDl~tge~~v~fspdg~~--asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLaf 164 (1630)
||.+-.+....... ... +.++....-.+.+||.- +.|++++.|. +|.+||..++ .....+. |...|.++.|
T Consensus 108 vW~IPe~~l~~~lt--epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn-~v~iWnv~tg--eali~l~-hpd~i~S~sf 181 (472)
T KOG0303|consen 108 VWQIPENGLTRDLT--EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN-TVSIWNVGTG--EALITLD-HPDMVYSMSF 181 (472)
T ss_pred EEECCCcccccCcc--cceEEEeecceeEEEEeecccchhhHhhccCCc-eEEEEeccCC--ceeeecC-CCCeEEEEEe
Confidence 99986654311111 112 44555555567788875 5788899999 9999999999 4444455 9999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEe---CCCeEEEEECCCC-Ccee
Q 000346 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGD---RRGTLLAWDVSIE-RPSM 238 (1630)
Q Consensus 165 SPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS---~DGtVrVWDl~tg-k~~l 238 (1630)
+.||.+|++.+.|..|||||.++++.+..-.. ...-. .+.|-.+|..+-+|. .++.+-+||..+- ++..
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~-----Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA-----RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc-----eeEEeccCceeeeccccccccceeccCcccccCcce
Confidence 99999999999999999999999999887743 22222 677888888555553 4788999998764 3323
Q ss_pred EEEeeccCCCeEEEEEeCCCCEEEE-EECCCceEEEEee
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVT-LCRDGSLQVWKTR 276 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~lLaS-gS~DGtIrIWDl~ 276 (1630)
...+.. ++.|.---|.+|..++.. |-.|+.||.|.+.
T Consensus 257 ~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 257 LQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 444443 566777778888887654 5579999999986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=141.45 Aligned_cols=249 Identities=12% Similarity=0.130 Sum_probs=175.5
Q ss_pred CCCCcEEEEEcC---CCCEEEEEEC-----CeEEEE--ECCCCcEEEEE--cCCCCEEEEEEeCCC----CCEEEEEECC
Q 000346 20 KPLQPHEAAFHP---NQALIAVAIG-----TYIIEF--DTLTGSRIASI--DINSPVVRMAYSPTS----GHAVVAILED 83 (1630)
Q Consensus 20 kp~rV~~LaFSP---dG~lLasgs~-----GtI~VW--Dl~tg~~i~tl--~~~~~VtsVafSpd~----g~lLaSgS~D 83 (1630)
.|..+.++.|+. .+.+|+.|+. +.|.|. |-++++.+..- +|.-+++.+-|.|+. ..+||+++
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--
Confidence 356788999983 3457888875 225554 44566665544 455899999999982 14677765
Q ss_pred CeEEEEECCCCcE----EEEEcCCCCe-EEeecCCeEEE-EEcCCCCEEEEEecCCcEEEEEEcccCC-ccceeeecCCC
Q 000346 84 CTIRSCDFDTEQS----FVLHSPEKKM-ESISVDTEVHL-ALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLK 156 (1630)
Q Consensus 84 GtIrVWDl~tge~----~v~fspdg~~-asgs~Dgtv~L-~~spdg~~LaSgs~Dg~tI~IwDl~sg~-~~~i~il~gH~ 156 (1630)
..+|+|.+...+. ....+.+.+. .++ -...+ |..-+-+++.+++-|. +..+||++++. ......+-.|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~a---PlTSFDWne~dp~~igtSSiDT-TCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCA---PLTSFDWNEVDPNLIGTSSIDT-TCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCC---cccccccccCCcceeEeecccC-eEEEEEEeeccccceeeEEEecC
Confidence 3899999874322 1111111111 100 01122 3344556888899999 99999999862 13466778899
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCcEEEEEec----CCceeecCcccEEEcC-CCCEEEEEeC-CCeEEEE
Q 000346 157 KPIVNLACHPRL-PVLYVAYADGLIRAYNIHTYAVHYTLQL----DNTIKLLGAGAFAFHP-TLEWLFVGDR-RGTLLAW 229 (1630)
Q Consensus 157 ~~ItsLafSPdg-~lLaSgS~DGtIrIWDl~t~~~i~tL~~----~~~V~IsGi~sVafSP-Dg~~LaSgS~-DGtVrVW 229 (1630)
+.|..++|..++ ..||+.+.||.||+||++...-...+.. ..... .++|++ |-+++++-.. ...|.|.
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl-----RLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL-----RLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce-----eeccCcCCchHHhhhhcCCceEEEE
Confidence 999999999855 4799999999999999997755444432 33454 788988 5567777654 4579999
Q ss_pred ECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeeeecC
Q 000346 230 DVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 230 Dl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
|++.-.. .+..+++|...|+.++|.|. ...|+|++.|..+.|||+.....
T Consensus 272 DiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 272 DIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred EecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 9996432 47889999999999999995 56899999999999999985443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=156.07 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=173.8
Q ss_pred CEEEEEECCeEEEEECCCCcEEEEEcCC---CCEEEEEEeCCCCCEEEE--EECCCeEEEEECCCCcEEEEEcCCCCe-E
Q 000346 34 ALIAVAIGTYIIEFDTLTGSRIASIDIN---SPVVRMAYSPTSGHAVVA--ILEDCTIRSCDFDTEQSFVLHSPEKKM-E 107 (1630)
Q Consensus 34 ~lLasgs~GtI~VWDl~tg~~i~tl~~~---~~VtsVafSpd~g~lLaS--gS~DGtIrVWDl~tge~~v~fspdg~~-a 107 (1630)
++.++.+.+.+++||+...+....+.++ -.+.+++|+.. +.|++ .+.|..+++|.-. ++. |.-.. -
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~--n~lvvas~~gdk~~~~~~K~-g~~-----~~Vp~~~ 75 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR--NFLVVASMAGDKVMRIKEKD-GKT-----PEVPRVR 75 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecccc--ceEEEeecCCceeEEEeccc-CCC-----Cccceee
Confidence 3445555588999999877666666543 44999999887 33444 4478889999732 221 00000 0
Q ss_pred EeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 000346 108 SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT 187 (1630)
Q Consensus 108 sgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t 187 (1630)
-...|...++.......++++|+..+ +|++||++.. .+.+.+.+|+..|+++.++....+||+++..|.|.|..+.+
T Consensus 76 k~~gd~~~Cv~~~s~S~y~~sgG~~~-~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 76 KLTGDNAFCVACASQSLYEISGGQSG-CVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred ccccchHHHHhhhhcceeeeccCcCc-eeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 01122333444444457888999999 9999999966 78889999999999999999999999999999999999999
Q ss_pred CcEEEEEec--CCceeecCcccEEEcCCCCE-EEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEE
Q 000346 188 YAVHYTLQL--DNTIKLLGAGAFAFHPTLEW-LFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVT 263 (1630)
Q Consensus 188 ~~~i~tL~~--~~~V~IsGi~sVafSPDg~~-LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaS 263 (1630)
+....+|.+ ...|+ -+.|+|..++ |.+++++|.|.+||+....+ .......|..+...|+|+|. ..+|++
T Consensus 153 ~~~tt~f~~~sgqsvR-----ll~ys~skr~lL~~asd~G~VtlwDv~g~sp-~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 153 KQKTTTFTIDSGQSVR-----LLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-IFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred CccccceecCCCCeEE-----EeecccccceeeEeeccCCeEEEEeccCCCc-ccchhhhccCCcCcceecCCccceEEE
Confidence 988888887 45566 8899997665 56778999999999997665 45667889999999999995 457899
Q ss_pred EECCCceEEEEeeeec
Q 000346 264 LCRDGSLQVWKTRVII 279 (1630)
Q Consensus 264 gS~DGtIrIWDl~~~~ 279 (1630)
.+.|..|.+||++...
T Consensus 227 VG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQA 242 (673)
T ss_pred ecccceEEEeeccccc
Confidence 9999999999998433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=155.13 Aligned_cols=250 Identities=15% Similarity=0.151 Sum_probs=168.4
Q ss_pred CcEEEEEcC---CCCEEEEEEC-CeEEEEECCCCcEE------EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEEC
Q 000346 23 QPHEAAFHP---NQALIAVAIG-TYIIEFDTLTGSRI------ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 23 rV~~LaFSP---dG~lLasgs~-GtI~VWDl~tg~~i------~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl 91 (1630)
...+..|++ ..+.|+.+.+ |.|.++|....... ..+..| ..|.++.|.|. ...|++++.|.++++||+
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDV 129 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC-ceeEEEccCCceeeeeee
Confidence 335566765 3457888888 88999998754322 333344 89999999995 899999999999999999
Q ss_pred CCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCC-----ccce----------------
Q 000346 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGG-----RAPT---------------- 149 (1630)
Q Consensus 92 ~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~-----~~~i---------------- 149 (1630)
++.++.-. +...++....-.+++.++.+ .+++|+.|+ .|.+||++-.. ..+.
T Consensus 130 k~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg-~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 130 KTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDG-EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred ccceeecc-----eeecccccccchhhhccCCCcceeeccCCC-cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 88866111 00112332334567777665 566788888 99999986431 0011
Q ss_pred ----eeecCCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEEcCCCcEEEEEec--CCce-----eecCcccEEEcCCC
Q 000346 150 ----KIKTDLKKPIVN---LACHPRLPVLYVAYA-DGLIRAYNIHTYAVHYTLQL--DNTI-----KLLGAGAFAFHPTL 214 (1630)
Q Consensus 150 ----~il~gH~~~Its---LafSPdg~lLaSgS~-DGtIrIWDl~t~~~i~tL~~--~~~V-----~IsGi~sVafSPDg 214 (1630)
.....|...|.+ +.+.-|...||+++. |+.|+|||++...+.....- ...+ .-.|+.++..+..|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 111233444444 555568889999887 99999999997655544331 0000 00234478888889
Q ss_pred CEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeE--EEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 215 EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPIT--SVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 215 ~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~Vs--sVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
.+|++.+.|++|++|++.+.....+..+.+|...-. .-..+||+.++++|+.|...++|.+....
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 999988889999999999764333555555432211 22458999999999999999999987443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-11 Score=136.40 Aligned_cols=237 Identities=21% Similarity=0.326 Sum_probs=178.4
Q ss_pred CcEEEEE-cCCCC-EEEEEEC--CeEEEEECCC-CcEEEEEcCC-CCEEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCc
Q 000346 23 QPHEAAF-HPNQA-LIAVAIG--TYIIEFDTLT-GSRIASIDIN-SPVVRMAYSPTSGHAVVAILE-DCTIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaF-SPdG~-lLasgs~--GtI~VWDl~t-g~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~-DGtIrVWDl~tge 95 (1630)
.+..+.+ ++++. .++..+. +.+.+|+... ......+..| ..|..++|+|+ +.++++++. |+.+++|+..++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCc
Confidence 5666666 88888 4444344 5699999998 6777777755 89999999999 878888885 9999999998744
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCCcccee-eecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTK-IKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~i~-il~gH~~~ItsLafSPdg~lLaS 173 (1630)
....+. ++.+....+.+++++. .+++++.|+ .|++||...+ .... .+.+|.... ...|+|++..+++
T Consensus 190 ~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~~wd~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 190 PLSTLA-------GHTDPVSSLAFSPDGGLLIASGSSDG-TIRLWDLSTG--KLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEeec-------cCCCceEEEEEcCCcceEEEEecCCC-cEEEEECCCC--cEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 433333 2344556677778887 555558888 8999988855 5555 688887775 4489999988899
Q ss_pred EeCCCeEEEEEcCCCcE-EEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEe--eccCCCe
Q 000346 174 AYADGLIRAYNIHTYAV-HYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII--QVGSQPI 249 (1630)
Q Consensus 174 gS~DGtIrIWDl~t~~~-i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL--~gH~~~V 249 (1630)
++.|+.+++||++.... ...+.. ...+. ++.|+|++..+++++.|+.+.+||..+... .... ..|...+
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 331 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-----SVAFSPDGKLLASGSSDGTVRLWDLETGKL--LSSLTLKGHEGPV 331 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEE-----EEEECCCCCEEEEeeCCCcEEEEEcCCCce--EEEeeecccCCce
Confidence 99999999999987664 444433 67787 899999888888888899999999887764 3333 3777789
Q ss_pred EEEEEeCCCCEEEEE-ECCCceEEEEeeee
Q 000346 250 TSVAWLPMLRLLVTL-CRDGSLQVWKTRVI 278 (1630)
Q Consensus 250 ssVsfSPdG~lLaSg-S~DGtIrIWDl~~~ 278 (1630)
..+.|.+++..++.+ ..|+.+++|+....
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 999994332455555 68899999987643
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=146.29 Aligned_cols=174 Identities=17% Similarity=0.084 Sum_probs=132.9
Q ss_pred CCccceeeeeeeeccCCCCCCCCcEEEEEcCCCC-EEEEEECCe-EEEEECCCCc---------EEEEEc-CCCCEEEEE
Q 000346 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQA-LIAVAIGTY-IIEFDTLTGS---------RIASID-INSPVVRMA 68 (1630)
Q Consensus 1 meW~t~q~LelqhvGrg~skp~rV~~LaFSPdG~-lLasgs~Gt-I~VWDl~tg~---------~i~tl~-~~~~VtsVa 68 (1630)
|||-+.+.-- | . +..|.++.|+++.. .+++|+.+. |++|-++.+. ....+. |+..|+++.
T Consensus 1 m~~~~~ei~w--H--~----~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 1 MEAYPIEISW--H--D----HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred CCceeeEEEe--c--C----CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE
Confidence 7777776532 2 1 23799999999877 999999855 9999876332 233444 448999999
Q ss_pred EeCCCCCEEEEEECCCeEEEEECCCCcE-----EEEEcCCCCe----EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEE
Q 000346 69 YSPTSGHAVVAILEDCTIRSCDFDTEQS-----FVLHSPEKKM----ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVV 139 (1630)
Q Consensus 69 fSpd~g~lLaSgS~DGtIrVWDl~tge~-----~v~fspdg~~----asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~Iw 139 (1630)
|+|+ |++|++|+++|.|.+|....-.. .....+..-. ..++.+....++|++++..+++++.|. ++++|
T Consensus 73 f~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn-s~~l~ 150 (434)
T KOG1009|consen 73 FSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN-SVRLW 150 (434)
T ss_pred EcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc-eEEEE
Confidence 9999 99999999999999998652111 0000010011 234455667889999999999999999 99999
Q ss_pred EcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 000346 140 GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186 (1630)
Q Consensus 140 Dl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~ 186 (1630)
|+..+ ....++.+|.+.+..++|.|-++++++-+.|...+.+++.
T Consensus 151 Dv~~G--~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 151 DVHAG--QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred Eeccc--eeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99999 8899999999999999999999999998888866666654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-12 Score=156.63 Aligned_cols=249 Identities=19% Similarity=0.226 Sum_probs=170.4
Q ss_pred CCCcEEEEEcCCCCE-EEEEEC-CeEEEEECCCCcE--E---EEEc--CCCCEEEEEEeCCCC--CEEEEEECCCeEEEE
Q 000346 21 PLQPHEAAFHPNQAL-IAVAIG-TYIIEFDTLTGSR--I---ASID--INSPVVRMAYSPTSG--HAVVAILEDCTIRSC 89 (1630)
Q Consensus 21 p~rV~~LaFSPdG~l-Lasgs~-GtI~VWDl~tg~~--i---~tl~--~~~~VtsVafSpd~g--~lLaSgS~DGtIrVW 89 (1630)
+..|.|+.|+|..+. ++.|.+ |.|.+||+..+.. . .... |..+|+.+.|..+ . .-+++++.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~-~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN-EHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc-CCCCceEEEecCCcEeee
Confidence 347999999996654 555555 8899999987654 2 2222 3489999999865 3 348999999999999
Q ss_pred ECCCCcE---EEEEcCCCCe--EEeecCCeEEEEEcCCCC-EEEEEecCCcEEEEEEcccCCccc------eeeecCCCC
Q 000346 90 DFDTEQS---FVLHSPEKKM--ESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAP------TKIKTDLKK 157 (1630)
Q Consensus 90 Dl~tge~---~v~fspdg~~--asgs~Dgtv~L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~------i~il~gH~~ 157 (1630)
+++.-.. .....+..+. -....-+...+.+.+..+ .++.|++.| .|..-+........ ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc-EEEEEeccCCcccccccccccccccccCc
Confidence 8765433 1111111100 001112335566666554 577777778 55442222111022 335567889
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCcEEEEEec-CCceeecCcccEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 000346 158 PIVNLACHPRLPVLYVAYADGLIRAYNIH-TYAVHYTLQL-DNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIE 234 (1630)
Q Consensus 158 ~ItsLafSPdg~lLaSgS~DGtIrIWDl~-t~~~i~tL~~-~~~V~IsGi~sVafSPDg~-~LaSgS~DGtVrVWDl~tg 234 (1630)
+|+++.++|=+..++..+.|.+++||+-. ...++..+.. ...|. +++|||... .++++..||.+.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~-----~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT-----DVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee-----eeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 99999999966655545559999999977 5566666655 55587 999999775 4556667999999999865
Q ss_pred CceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 235 RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 235 k~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
...-+.+...+....+.+.|++.|++|++|...|++++|++.
T Consensus 475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 433355555556777889999999999999999999999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-11 Score=148.01 Aligned_cols=208 Identities=12% Similarity=0.049 Sum_probs=144.0
Q ss_pred eEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECC---CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEE
Q 000346 43 YIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLA 118 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~D---GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~ 118 (1630)
.|.+||..... .+.+. +...+.+++|+|+ |+.|+.++.+ ..|++||+.+++........+ ....+.
T Consensus 185 ~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g--------~~~~~~ 254 (429)
T PRK01742 185 EVRVADYDGFN-QFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG--------HNGAPA 254 (429)
T ss_pred EEEEECCCCCC-ceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC--------ccCcee
Confidence 49999987555 44555 4578999999999 9888887643 479999998876421111111 122468
Q ss_pred EcCCCCEEEEEe-cCCcEEEEE--EcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC-cEEEE
Q 000346 119 LTPLQPVVFFGF-HRRMSVTVV--GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTY-AVHYT 193 (1630)
Q Consensus 119 ~spdg~~LaSgs-~Dg~tI~Iw--Dl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS-~DGtIrIWDl~t~-~~i~t 193 (1630)
++|++..|++++ .++ .+.+| |..++ . ...+..+...+.+..|+|||+.|+.++ .++...||++... .....
T Consensus 255 wSPDG~~La~~~~~~g-~~~Iy~~d~~~~--~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 255 FSPDGSRLAFASSKDG-VLNIYVMGANGG--T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred ECCCCCEEEEEEecCC-cEEEEEEECCCC--C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 899999887765 455 44554 55444 3 344556677788999999999877655 5788888876532 22222
Q ss_pred EecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEE
Q 000346 194 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 194 L~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIW 273 (1630)
+.+.. . ...|+|||++|++++.++ +.+||+.+++. . .+..+ ....++.|+|||++|++++.+|.+.+|
T Consensus 331 l~~~~--~-----~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~--~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 331 VGGRG--Y-----SAQISADGKTLVMINGDN-VVKQDLTSGST--E-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred ecCCC--C-----CccCCCCCCEEEEEcCCC-EEEEECCCCCe--E-EecCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence 32222 3 678999999999888765 55599998874 2 22222 234578899999999999999999999
Q ss_pred Eee
Q 000346 274 KTR 276 (1630)
Q Consensus 274 Dl~ 276 (1630)
++.
T Consensus 399 ~~~ 401 (429)
T PRK01742 399 QLV 401 (429)
T ss_pred EEE
Confidence 875
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=138.82 Aligned_cols=244 Identities=13% Similarity=0.172 Sum_probs=179.5
Q ss_pred CcEEEEEcCCCCEEEEEECC-eEEEEECC------CCcEEEEEc-CC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 23 QPHEAAFHPNQALIAVAIGT-YIIEFDTL------TGSRIASID-IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~G-tI~VWDl~------tg~~i~tl~-~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
-|.++.|+.++++|++|+++ ++++|+++ +.+.+.... +| +.|.|++|... ...+.+|+.+++|...|+++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcceeEeeeccc
Confidence 68899999999999999994 59999986 456677666 45 88999999987 88999999999999999998
Q ss_pred CcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccce--eeecCCCCCeEEEEEcCCC-CE
Q 000346 94 EQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT--KIKTDLKKPIVNLACHPRL-PV 170 (1630)
Q Consensus 94 ge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i--~il~gH~~~ItsLafSPdg-~l 170 (1630)
.+..-.+..+... .....+..+|..+.+++.+.++ .|.+||.+... ... ...........++.|+|.. .+
T Consensus 137 ~qsi~V~~~~~~~-----~~VY~m~~~P~DN~~~~~t~~~-~V~~~D~Rd~~-~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 137 KQSIYVANENNNR-----GDVYHMDQHPTDNTLIVVTRAK-LVSFIDNRDRQ-NPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred ceeeeeecccCcc-----cceeecccCCCCceEEEEecCc-eEEEEeccCCC-CCCceeeecCCCccceeeeecCCCcee
Confidence 8774444433321 1235667789999999999999 99999998763 122 2223335567888999954 57
Q ss_pred EEEEeCCCeEEEEEcCCCc------------------------------------------------EEEEEe--c--CC
Q 000346 171 LYVAYADGLIRAYNIHTYA------------------------------------------------VHYTLQ--L--DN 198 (1630)
Q Consensus 171 LaSgS~DGtIrIWDl~t~~------------------------------------------------~i~tL~--~--~~ 198 (1630)
|++++..+-+-+||++... ....++ + .+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 8888888899999987211 001111 1 11
Q ss_pred ceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC----------C-----------ceeEEEeeccCCCeEEEEEeCC
Q 000346 199 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE----------R-----------PSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 199 ~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg----------k-----------~~lv~tL~gH~~~VssVsfSPd 257 (1630)
.+++.-+-+++|..|. .+++|+++-.|++|.+... . ......+++|.+.++.+.|+|.
T Consensus 290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred ceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 1111112355666553 4899999999999987531 1 0113568999999999999999
Q ss_pred CCEEEEEECCCceEEEEe
Q 000346 258 LRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl 275 (1630)
..+|++++..+.+++|.-
T Consensus 369 ~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cceEeccchhhheecccc
Confidence 999999999999999953
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=137.40 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=156.0
Q ss_pred EEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEccc
Q 000346 64 VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE 143 (1630)
Q Consensus 64 VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~s 143 (1630)
-.++.|++. |.+||+|+.||.|.+||+.|... ++.++++.....+++|+++|..+++++.|. .|.+||+..
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~i-------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~-si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRI-------ARMLSAHVRPITSLCWSRDGRKLLTSSRDW-SIKLWDLLK 96 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccch-------hhhhhccccceeEEEecCCCCEeeeecCCc-eeEEEeccC
Confidence 789999999 99999999999999999977643 222345566678899999999999999999 999999999
Q ss_pred CCccceeeecCCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEE
Q 000346 144 GGRAPTKIKTDLKKPIVNLACHPRLPV-LYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVG 220 (1630)
Q Consensus 144 g~~~~i~il~gH~~~ItsLafSPdg~l-LaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSg 220 (1630)
+ .+.+.+. ...+|..+.|||.... .++.-.+..-.+.++..+ ....+.. ++..+ .-..+..|++.|+|+++|
T Consensus 97 g--s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-~h~~Lp~d~d~dln-~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 97 G--SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-KHSVLPKDDDGDLN-SSASHGVFDRRGKYIITG 171 (405)
T ss_pred C--CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC-ceeeccCCCccccc-cccccccccCCCCEEEEe
Confidence 9 5666555 4789999999995543 333334555556666552 2223332 22222 001234689999999999
Q ss_pred eCCCeEEEEECCCCCceeEEEeeccC-CCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCC
Q 000346 221 DRRGTLLAWDVSIERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPN 282 (1630)
Q Consensus 221 S~DGtVrVWDl~tgk~~lv~tL~gH~-~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pn 282 (1630)
...|.+.++|..+.++ +..++-.+ ..|..+.++..|++|+.-+.|+.||.|++.....++
T Consensus 172 tsKGkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred cCcceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 9999999999999875 77776655 789999999999999999999999999998555543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=150.37 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=170.1
Q ss_pred EEcCCCCEEEEEE---CCeEEEEECCCC-cE----EEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-EE
Q 000346 28 AFHPNQALIAVAI---GTYIIEFDTLTG-SR----IASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FV 98 (1630)
Q Consensus 28 aFSPdG~lLasgs---~GtI~VWDl~tg-~~----i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-~v 98 (1630)
-|+.+..++++-. .|.|-||+++.. +. +-.+.....|+++.|.|-+.+.|+++++||.|++|.+..+.. -.
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3555566666533 366999999743 22 333344578999999997789999999999999999977643 11
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
...|.+ .++++.+.+..+-|||-- +.+++++.|. +|++||+.+. +....+.+|++.|.+++|+|+|+.+++.+.|
T Consensus 666 ~~tPe~-~lt~h~eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~--~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 666 EMTPEK-ILTIHGEKITSLRFHPLAADVLAVASYDS-TIELWDLANA--KLYSRLVGHTDQIFGIAWSPDGRRIATVCKD 741 (1012)
T ss_pred cCCcce-eeecccceEEEEEecchhhhHhhhhhccc-eeeeeehhhh--hhhheeccCcCceeEEEECCCCcceeeeecC
Confidence 112211 156777888899999875 5788899999 9999999998 7777889999999999999999999999999
Q ss_pred CeEEEEEcCCCc-EEEEEecCCceeecCcccEEEcCCCCEEEEEeCC----CeEEEEECCCC--CceeEEEeeccCCCeE
Q 000346 178 GLIRAYNIHTYA-VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR----GTLLAWDVSIE--RPSMIGIIQVGSQPIT 250 (1630)
Q Consensus 178 GtIrIWDl~t~~-~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D----GtVrVWDl~tg--k~~lv~tL~gH~~~Vs 250 (1630)
|+|++|.-+++. .++.-.+ .+- .....+.|.-||+++++.+.| +.|.+||..+- .+.....+.... .+.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~g--pvg-tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~L 817 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKG--PVG-TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPL 817 (1012)
T ss_pred ceEEEeCCCCCCCccccCCC--Ccc-CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccc
Confidence 999999988653 3333322 111 011267888999998887754 56888887753 221122222111 111
Q ss_pred EEEEeCCCC-EEEEEECCCceEEEEee
Q 000346 251 SVAWLPMLR-LLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 251 sVsfSPdG~-lLaSgS~DGtIrIWDl~ 276 (1630)
--.+.+|.. ++++|-.|..|.+|.+-
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEec
Confidence 123444544 67788889999999875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=165.89 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=164.1
Q ss_pred CCCCcEEEEEcCCCC-EEEEEEC-CeEEEEECCCCcEEEEEc---CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCC
Q 000346 20 KPLQPHEAAFHPNQA-LIAVAIG-TYIIEFDTLTGSRIASID---INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~-lLasgs~-GtI~VWDl~tg~~i~tl~---~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tg 94 (1630)
+...|..++|++.+. +||+|++ |.|.|||+.+-+.-.++. ..+.|.+++|+..-.+.|++++.+|.+.|||++..
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 344899999999776 9999988 889999998755433332 22789999999875788999999999999999888
Q ss_pred cEEEEEcCCCCeEEeecCCeEEEEEcCCCC-EEEEEecC--CcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC-CE
Q 000346 95 QSFVLHSPEKKMESISVDTEVHLALTPLQP-VVFFGFHR--RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PV 170 (1630)
Q Consensus 95 e~~v~fspdg~~asgs~Dgtv~L~~spdg~-~LaSgs~D--g~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg-~l 170 (1630)
+..+.++-.+.. ...-.+.|||+.. .++++++| .-.|.+||++... .+.+++++|...|.++.|++.+ .+
T Consensus 195 ~pii~ls~~~~~-----~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 195 KPIIKLSDTPGR-----MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred CcccccccCCCc-----cceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCCchh
Confidence 665555533221 1123567888873 34444333 2379999999876 8899999999999999999955 78
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 000346 171 LYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 171 LaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~-~LaSgS~DGtVrVWDl~tgk 235 (1630)
+++++.|+.|.+|+.++++.+..+.. .++++ .+.|+|... .+++++-||.|.||.+....
T Consensus 269 llSsgkD~~ii~wN~~tgEvl~~~p~~~nW~f-----dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTGEVLGELPAQGNWCF-----DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhcccCCCCeeEecCCCceEeeecCCCCccee-----eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999999999999987 88998 999999665 78888899999999988654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-12 Score=147.88 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=144.3
Q ss_pred CCCCCCcEEEEEc-----CCCCEEEEEEC-CeEEEEECCCCcEEEEEc-----CCCCEEEEEEeCCCCCEEEEEECCCeE
Q 000346 18 DHKPLQPHEAAFH-----PNQALIAVAIG-TYIIEFDTLTGSRIASID-----INSPVVRMAYSPTSGHAVVAILEDCTI 86 (1630)
Q Consensus 18 ~skp~rV~~LaFS-----PdG~lLasgs~-GtI~VWDl~tg~~i~tl~-----~~~~VtsVafSpd~g~lLaSgS~DGtI 86 (1630)
..+...+.|-+|+ |.+--++.|-. |.|.+.|....+..+.+. ....|+++.|-|.+...++++-.+|.+
T Consensus 165 ~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnl 244 (636)
T KOG2394|consen 165 EYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNL 244 (636)
T ss_pred cccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCce
Confidence 3445567788884 45666777777 889988877543333232 127899999999867788888899999
Q ss_pred EEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC
Q 000346 87 RSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1630)
Q Consensus 87 rVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP 166 (1630)
++||.+... +. ..- +....+++..+ .|..|.-.... .++..+.--.+.|..++|+|
T Consensus 245 yly~~~~~~--------~~-----t~p--~~~~~k~~~~f--------~i~t~ksk~~r-NPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 245 YLYDKEIVC--------GA-----TAP--SYQALKDGDQF--------AILTSKSKKTR-NPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred EEeeccccc--------cC-----CCC--cccccCCCCee--------EEeeeeccccC-CccceeEeccccccceeEcC
Confidence 999862110 00 000 00111122111 11111111110 22222222245789999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeecc
Q 000346 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 167 dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH 245 (1630)
||++||+.+.||.+||||..+.+++-.++. -+... |++|+|||+||++|+.|..|.||.+...+ ++..-++|
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-----CvcWSPDGKyIvtGGEDDLVtVwSf~erR--VVARGqGH 373 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-----CVCWSPDGKYIVTGGEDDLVTVWSFEERR--VVARGQGH 373 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-----EEEEcCCccEEEecCCcceEEEEEeccce--EEEecccc
Confidence 999999999999999999998887766665 56666 99999999999999999999999999877 58888999
Q ss_pred CCCeEEEEEeC
Q 000346 246 SQPITSVAWLP 256 (1630)
Q Consensus 246 ~~~VssVsfSP 256 (1630)
.++|+.|+|.|
T Consensus 374 kSWVs~VaFDp 384 (636)
T KOG2394|consen 374 KSWVSVVAFDP 384 (636)
T ss_pred ccceeeEeecc
Confidence 99999999983
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-10 Score=134.75 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=148.9
Q ss_pred CeEEEEECCC-Cc--EEEEEcCCCCEEEEEEeCCCCCEEEEEE-CCCeEEEEECC-CCcEEEEEcCCCCeEEeecCCeEE
Q 000346 42 TYIIEFDTLT-GS--RIASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFD-TEQSFVLHSPEKKMESISVDTEVH 116 (1630)
Q Consensus 42 GtI~VWDl~t-g~--~i~tl~~~~~VtsVafSpd~g~lLaSgS-~DGtIrVWDl~-tge~~v~fspdg~~asgs~Dgtv~ 116 (1630)
+.|.+||+.+ ++ .++.+...+....++++|+ +++|++++ .++.|.+|+++ ++.....-. . ........
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~----~--~~~~~p~~ 84 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAE----S--PLPGSPTH 84 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeee----e--cCCCCceE
Confidence 6699999974 43 4455554467788999999 88876654 57899999986 333211100 0 01123467
Q ss_pred EEEcCCCCEEEEEecCCcEEEEEEcccCCc--cceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCcEEE-
Q 000346 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHY- 192 (1630)
Q Consensus 117 L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~--~~i~il~gH~~~ItsLafSPdg~lLaSgS-~DGtIrIWDl~t~~~i~- 192 (1630)
+.++|+++++++++.....|.+|++.+... ....... +.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 889999998888875333899999964320 1222222 233467789999999886655 66999999998633221
Q ss_pred ------EEecCCceeecCcccEEEcCCCCEEEEEeC-CCeEEEEECCC--CCceeEEEeecc------CCCeEEEEEeCC
Q 000346 193 ------TLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSI--ERPSMIGIIQVG------SQPITSVAWLPM 257 (1630)
Q Consensus 193 ------tL~~~~~V~IsGi~sVafSPDg~~LaSgS~-DGtVrVWDl~t--gk~~lv~tL~gH------~~~VssVsfSPd 257 (1630)
......... .++|+|+|++++++.. +++|.+||+.. ++...+..+..+ ......+.++|+
T Consensus 164 ~~~~~~~~~~g~~p~-----~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 164 QEPAEVTTVEGAGPR-----HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cCCCceecCCCCCCc-----eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 111122334 8999999999988876 89999999974 332234444322 123346889999
Q ss_pred CCEEEEEEC-CCceEEEEeee
Q 000346 258 LRLLVTLCR-DGSLQVWKTRV 277 (1630)
Q Consensus 258 G~lLaSgS~-DGtIrIWDl~~ 277 (1630)
+++++++.. +++|.+|++..
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeC
Confidence 999888764 78999999853
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=135.72 Aligned_cols=243 Identities=11% Similarity=0.111 Sum_probs=174.6
Q ss_pred CCCcEEEEEcC----CC-CEEEEEECCeEEEEECCCCcE---EEEEc---CCCCEEEEEEeCC---CCCEEEEEECCCeE
Q 000346 21 PLQPHEAAFHP----NQ-ALIAVAIGTYIIEFDTLTGSR---IASID---INSPVVRMAYSPT---SGHAVVAILEDCTI 86 (1630)
Q Consensus 21 p~rV~~LaFSP----dG-~lLasgs~GtI~VWDl~tg~~---i~tl~---~~~~VtsVafSpd---~g~lLaSgS~DGtI 86 (1630)
...|..++|++ +. ..+++.+.+++.+|+....-. ++.+. +......++|+-+ +..++|+++.-|.|
T Consensus 38 ~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvI 117 (385)
T KOG1034|consen 38 NKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVI 117 (385)
T ss_pred CCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEE
Confidence 34789999985 22 355666667799999875443 33333 2366788888744 24689999999999
Q ss_pred EEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeee---cCCCCCeEEE
Q 000346 87 RSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIK---TDLKKPIVNL 162 (1630)
Q Consensus 87 rVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il---~gH~~~ItsL 162 (1630)
+|.|+.++++.-.+. ++...+-.+-++|+. +++++++.|. +|++|++++. .|+.++ .+|...|.++
T Consensus 118 rVid~~~~~~~~~~~-------ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~--~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 118 RVIDVVSGQCSKNYR-------GHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTD--VCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred EEEecchhhhcccee-------ccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCC--eEEEEecccccccCcEEEE
Confidence 999998887633222 223333456677776 5889999999 9999999998 888887 7899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEe-----------------------------cCCceeecCcccEEEcCC
Q 000346 163 ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-----------------------------LDNTIKLLGAGAFAFHPT 213 (1630)
Q Consensus 163 afSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~-----------------------------~~~~V~IsGi~sVafSPD 213 (1630)
.|+++|.+|++++.|.++++|++...+....++ |.+.|. |+.|-
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD-----Cvrw~-- 260 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD-----CVRWF-- 260 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH-----HHHHH--
Confidence 999999999999999999999998432111111 122222 44443
Q ss_pred CCEEEEEeCCCeEEEEECCC------------CCceeEEEeeccCCCeEEEEEe--CCCCEEEEEECCCceEEEEeeeec
Q 000346 214 LEWLFVGDRRGTLLAWDVSI------------ERPSMIGIIQVGSQPITSVAWL--PMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 214 g~~LaSgS~DGtVrVWDl~t------------gk~~lv~tL~gH~~~VssVsfS--PdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
|.++++=+-++.|..|..-. ....+...+......|+-+.|. |-++.||.|...|.|.+||++...
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 46888888899999997611 1112344555555677777665 558899999999999999998554
Q ss_pred C
Q 000346 280 N 280 (1630)
Q Consensus 280 ~ 280 (1630)
.
T Consensus 341 p 341 (385)
T KOG1034|consen 341 P 341 (385)
T ss_pred C
Confidence 4
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=147.86 Aligned_cols=241 Identities=17% Similarity=0.235 Sum_probs=174.9
Q ss_pred EEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCC--CEEEEEECCCeEEEEECCCCcEEEEEcC
Q 000346 26 EAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSG--HAVVAILEDCTIRSCDFDTEQSFVLHSP 102 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g--~lLaSgS~DGtIrVWDl~tge~~v~fsp 102 (1630)
.-.||+|++.++......|.||...||+++..++.| .++..+.+.|... .++.+++.||.|++||...++..-++..
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 456899999999999999999999999999999955 9999999998734 4677999999999999988876222211
Q ss_pred CCCe---------------EEee-cCCe-----------------------------------EEEEEcCCCCEEEEEec
Q 000346 103 EKKM---------------ESIS-VDTE-----------------------------------VHLALTPLQPVVFFGFH 131 (1630)
Q Consensus 103 dg~~---------------asgs-~Dgt-----------------------------------v~L~~spdg~~LaSgs~ 131 (1630)
+.+. +..+ .+.. ..+.+.+.+...... .
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~ 179 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-H 179 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-E
Confidence 1111 0000 0000 222333333333332 3
Q ss_pred CCcEEEEEEcccCC--ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--C-cE-EEEEe-cCCceeecC
Q 000346 132 RRMSVTVVGTVEGG--RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT--Y-AV-HYTLQ-LDNTIKLLG 204 (1630)
Q Consensus 132 Dg~tI~IwDl~sg~--~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t--~-~~-i~tL~-~~~~V~IsG 204 (1630)
+. .+.+|+..+.. .....+-..|...+++.++||.++++++|..||.|.+|.--. . .. .+.+. |...|.
T Consensus 180 ~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~--- 255 (792)
T KOG1963|consen 180 MC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN--- 255 (792)
T ss_pred ee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc---
Confidence 33 46777776632 011122245666789999999999999999999999996322 1 11 22232 367888
Q ss_pred cccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 205 AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 205 i~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++.|+++|.+|++|+.++.+.+|.+.+++. +.+.--.++|..+.++||+.+.+...+|..|.+-...
T Consensus 256 --~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 256 --SLSFSSDGAYLLSGGREGVLVLWQLETGKK---QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred --eeEEecCCceEeecccceEEEEEeecCCCc---ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 999999999999999999999999999884 3344456799999999999999999999999888764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=152.01 Aligned_cols=258 Identities=16% Similarity=0.157 Sum_probs=174.4
Q ss_pred ccceeeeeeeeccCCCCCCCCcEEEEEcC--CCCEEEEEEC-CeEEEEEC-CCC----cEEEEEc-------CC-CCEEE
Q 000346 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHP--NQALIAVAIG-TYIIEFDT-LTG----SRIASID-------IN-SPVVR 66 (1630)
Q Consensus 3 W~t~q~LelqhvGrg~skp~rV~~LaFSP--dG~lLasgs~-GtI~VWDl-~tg----~~i~tl~-------~~-~~Vts 66 (1630)
|...+. +.....+..+..+|+.+.+-. |..++++|+. |.|+||+- .++ +.+..+. +. +.=.-
T Consensus 1093 ~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v 1170 (1387)
T KOG1517|consen 1093 WEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLV 1170 (1387)
T ss_pred cccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCee
Confidence 444443 333434455677999999854 5567888888 88999963 332 3333322 11 11144
Q ss_pred EEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEE-EEcCCCCEEEEEecCCcEEEEEEcccCC
Q 000346 67 MAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHL-ALTPLQPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 67 VafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L-~~spdg~~LaSgs~Dg~tI~IwDl~sg~ 145 (1630)
+.|....|.+ +++|+-..|||||.+...++...- -+. ......+ .....|+.++.|..|| .|++||.+...
T Consensus 1171 ~dWqQ~~G~L-l~tGd~r~IRIWDa~~E~~~~diP-~~s-----~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1171 VDWQQQSGHL-LVTGDVRSIRIWDAHKEQVVADIP-YGS-----STLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAP 1242 (1387)
T ss_pred eehhhhCCeE-EecCCeeEEEEEecccceeEeecc-cCC-----CccceeecccccCCceEEEeecCC-ceEEeecccCC
Confidence 6787774554 455557899999998776533322 111 1111111 2233478999999999 99999998763
Q ss_pred c-cceeeecCCCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCcEEEEEe---c---CCceeecCcccEEEcCCCC
Q 000346 146 R-APTKIKTDLKKP--IVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQ---L---DNTIKLLGAGAFAFHPTLE 215 (1630)
Q Consensus 146 ~-~~i~il~gH~~~--ItsLafSPdg~-lLaSgS~DGtIrIWDl~t~~~i~tL~---~---~~~V~IsGi~sVafSPDg~ 215 (1630)
. ..+.....|+.. |..+.+.+.|- .|++|+.||.|++||++.......+. + ...++ ++..|++.+
T Consensus 1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT-----al~VH~hap 1317 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT-----ALTVHEHAP 1317 (1387)
T ss_pred ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce-----eeeeccCCC
Confidence 1 356777889877 99999999765 49999999999999999753222222 1 22366 999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEE----EeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 216 WLFVGDRRGTLLAWDVSIERPSMIG----IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 216 ~LaSgS~DGtVrVWDl~tgk~~lv~----tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.+++|+. +.|+||++.-.+...++ .+......++|+.|||..-++|+|+.|.+|.||...
T Consensus 1318 iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 9999998 99999999854311111 111123667999999999999999999999999754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-11 Score=147.46 Aligned_cols=212 Identities=11% Similarity=0.083 Sum_probs=146.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-C---eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEE-CCCeEEEE--ECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG-T---YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSC--DFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-G---tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS-~DGtIrVW--Dl~tge 95 (1630)
.+.+.+|||||+.|+.++. + .|.+||+.+++........+....++|+|| |+.|+.++ .+|.+.+| |+.+++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCC
Confidence 6889999999999998775 2 399999998865333222233457899999 88877764 67766555 555554
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEec-CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH-RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~-Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSg 174 (1630)
... ++.+........++|++..++++++ ++ ...+|++.... .....+ .+.. .+..|+|||+.|+.+
T Consensus 284 ~~~--------lt~~~~~~~~~~wSpDG~~i~f~s~~~g-~~~I~~~~~~~-~~~~~l-~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 284 PSQ--------LTSGAGNNTEPSWSPDGQSILFTSDRSG-SPQVYRMSASG-GGASLV-GGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred eEe--------eccCCCCcCCEEECCCCCEEEEEECCCC-CceEEEEECCC-CCeEEe-cCCC--CCccCCCCCCEEEEE
Confidence 311 1112222345788999987776664 45 67888775432 222222 3433 467899999999888
Q ss_pred eCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECC--CCCceeEEEeeccCCCeEEE
Q 000346 175 YADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS--IERPSMIGIIQVGSQPITSV 252 (1630)
Q Consensus 175 S~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~--tgk~~lv~tL~gH~~~VssV 252 (1630)
+.++ +.+||+.++........ .... .+.|+|||++|++++.++.+.+|++. +++. ...+..|...+...
T Consensus 351 ~~~~-i~~~Dl~~g~~~~lt~~-~~~~-----~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~--~~~l~~~~g~~~~p 421 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVLSST-FLDE-----SPSISPNGIMIIYSSTQGLGKVLQLVSADGRF--KARLPGSDGQVKFP 421 (429)
T ss_pred cCCC-EEEEECCCCCeEEecCC-CCCC-----CceECCCCCEEEEEEcCCCceEEEEEECCCCc--eEEccCCCCCCCCc
Confidence 7765 55599998876433222 2234 78899999999999999988888764 3553 77788888889999
Q ss_pred EEeCC
Q 000346 253 AWLPM 257 (1630)
Q Consensus 253 sfSPd 257 (1630)
+|+|-
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 99985
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-10 Score=128.53 Aligned_cols=234 Identities=14% Similarity=0.163 Sum_probs=169.7
Q ss_pred CCCcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECC--CeEEEEECCCCcE-
Q 000346 21 PLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILED--CTIRSCDFDTEQS- 96 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~D--GtIrVWDl~tge~- 96 (1630)
...+..+.|+.+...|..|+.+..++|+.+......... ....|..+-|+.. ++|..+.+ +.+++.+++.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCceE
Confidence 346888899999999999999888999887554422222 3356777788765 66666644 4588888866543
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeec---CCCCCeEEEEEcCCCCEEEE
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT---DLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~---gH~~~ItsLafSPdg~lLaS 173 (1630)
|-.+-|. ..+.+.... +.++++-.+ .|.+||+... +.+.++. .+...+.++++++.+.+++.
T Consensus 82 Ce~~fpt---------~IL~VrmNr--~RLvV~Lee--~IyIydI~~M--klLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 82 CEIFFPT---------SILAVRMNR--KRLVVCLEE--SIYIYDIKDM--KLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred EEEecCC---------ceEEEEEcc--ceEEEEEcc--cEEEEecccc--eeehhhhccCCCccceEeeccCCCCceEEe
Confidence 2111111 122333322 223333333 5899999877 5555543 34555677777777778876
Q ss_pred Ee--CCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCe-EEEEECCCCCceeEEEeeccC--C
Q 000346 174 AY--ADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGT-LLAWDVSIERPSMIGIIQVGS--Q 247 (1630)
Q Consensus 174 gS--~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGt-VrVWDl~tgk~~lv~tL~gH~--~ 247 (1630)
-+ ..|.|.+||..+.+.+.++.. ++.+- +++|+++|.+|+++++.|+ |||+.+.+++. +..++-.. .
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~aH~~~lA-----alafs~~G~llATASeKGTVIRVf~v~~G~k--l~eFRRG~~~~ 219 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTINAHKGPLA-----ALAFSPDGTLLATASEKGTVIRVFSVPEGQK--LYEFRRGTYPV 219 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEEecCCcee-----EEEECCCCCEEEEeccCceEEEEEEcCCccE--eeeeeCCceee
Confidence 44 568999999999999999986 89998 9999999999999999887 78999999985 66665444 5
Q ss_pred CeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 248 PITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 248 ~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
.|.+++|+|++++|++.|..++|+||.+....
T Consensus 220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 67899999999999999999999999998544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-11 Score=135.51 Aligned_cols=220 Identities=10% Similarity=0.174 Sum_probs=166.9
Q ss_pred CCcEEEEEcC-CCCEEEEEECCe-EEEEECCCC-------cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEEC
Q 000346 22 LQPHEAAFHP-NQALIAVAIGTY-IIEFDTLTG-------SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 22 ~rV~~LaFSP-dG~lLasgs~Gt-I~VWDl~tg-------~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl 91 (1630)
..|..++|+| +...||+|++++ |.||.+..+ +.+..+.+| ..|--+.|+|.-.+.|++++.|.+|.+||+
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 3789999999 556788888865 999998644 456777866 889999999987789999999999999999
Q ss_pred CCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCC-CeEEEEEcCCCCE
Q 000346 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKK-PIVNLACHPRLPV 170 (1630)
Q Consensus 92 ~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~-~ItsLafSPdg~l 170 (1630)
.+++..+... +.|....+.|+.+|..+++.+.|. .|++||.+++ ..+....+|.+ .-..+.|-.++.+
T Consensus 162 ~tgeali~l~--------hpd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~--~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 162 GTGEALITLD--------HPDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRG--TVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred cCCceeeecC--------CCCeEEEEEeccCCceeeeecccc-eeEEEcCCCC--cEeeecccccCCCcceeEEeccCce
Confidence 9998755543 356677889999999999999999 9999999999 67777777754 3355667778885
Q ss_pred EEEEe---CCCeEEEEEcCCC---cEEEEEecCCceeecCcccEEEcCCCCEEEEEe-CCCeEEEEECCCCCceeEEEee
Q 000346 171 LYVAY---ADGLIRAYNIHTY---AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQ 243 (1630)
Q Consensus 171 LaSgS---~DGtIrIWDl~t~---~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS-~DGtVrVWDl~tgk~~lv~tL~ 243 (1630)
+-+|. .+..+-+||..+. -...++...+.|. ---|++|...++.++ .|+.|+-|.+.+..+ .++.+.
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-----~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P-~~hyln 304 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-----LPFYDPDTSIVYLCGKGDSSIRYFEITNEPP-FVHYLN 304 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceE-----EeeecCCCCEEEEEecCCcceEEEEecCCCc-eeEEec
Confidence 54443 6789999996643 3455555566675 667888888776555 699999999998765 333332
Q ss_pred cc--CCCeEEEEEeCCC
Q 000346 244 VG--SQPITSVAWLPML 258 (1630)
Q Consensus 244 gH--~~~VssVsfSPdG 258 (1630)
.. ..+=..+.|-|..
T Consensus 305 ~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 305 TFSSKEPQRGMGFMPKR 321 (472)
T ss_pred ccccCCccccccccccc
Confidence 21 2444567777653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=135.76 Aligned_cols=230 Identities=11% Similarity=0.093 Sum_probs=164.9
Q ss_pred EEEEEEC-----CeEEEEECCCC--cE-EEEEcCC-CCEEEEEEeCCCCCEEEEEECC-------CeEEEEECCCCcEEE
Q 000346 35 LIAVAIG-----TYIIEFDTLTG--SR-IASIDIN-SPVVRMAYSPTSGHAVVAILED-------CTIRSCDFDTEQSFV 98 (1630)
Q Consensus 35 lLasgs~-----GtI~VWDl~tg--~~-i~tl~~~-~~VtsVafSpd~g~lLaSgS~D-------GtIrVWDl~tge~~v 98 (1630)
.+++|.. +.|.+.+++.+ +. .+.|.|+ +.|+.++-+|.+...|+++..| -.+.||.+......
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~- 106 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ- 106 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-
Confidence 4555543 33777666543 33 2345566 9999999999867777777653 24678987543211
Q ss_pred EEcCCCCe-EEeec-----CCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee-----cCCCCCeEEEEEcC-
Q 000346 99 LHSPEKKM-ESISV-----DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-----TDLKKPIVNLACHP- 166 (1630)
Q Consensus 99 ~fspdg~~-asgs~-----Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-----~gH~~~ItsLafSP- 166 (1630)
+..... ...+. ...-++.|.|++..+++-. |. .|.+|++.++. +....+ .+|....++-+|+|
T Consensus 107 --S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn-~i~l~~l~ess-~~vaev~ss~s~e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 107 --SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DN-NIVLWSLDESS-KIVAEVLSSESAEMRHSFTSGAWSPH 181 (370)
T ss_pred --cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC-ceEEEEcccCc-chheeecccccccccceecccccCCC
Confidence 000001 11111 1345677888888887766 55 68999998874 322222 34566788889999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCC-EEEEEeCCCeEEEEECCCCCceeEEEe
Q 000346 167 -RLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIERPSMIGII 242 (1630)
Q Consensus 167 -dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~-~LaSgS~DGtVrVWDl~tgk~~lv~tL 242 (1630)
+++.+++. .|++++.||+++.++...+.. ...|. .+.|+|+.+ +|++|++||.|++||.+..+. .++.+
T Consensus 182 Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vr-----dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el 254 (370)
T KOG1007|consen 182 HDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVR-----DLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQEL 254 (370)
T ss_pred CccceEEEe-CCCcEEEEEccchhhhcchhhhhcceee-----eccCCCCceEEEEEcCCCccEEEEeccCCCc-ccccc
Confidence 77777766 589999999999988887774 56677 999999765 578899999999999997543 48899
Q ss_pred eccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeee
Q 000346 243 QVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 243 ~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~ 277 (1630)
.+|..+|+++.|+|. .++|.|||.|..|.+|....
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 999999999999994 57899999999999998763
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-11 Score=139.84 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=163.1
Q ss_pred CeEEEEECCCCcEEEEEcCC--CCEEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEE
Q 000346 42 TYIIEFDTLTGSRIASIDIN--SPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLA 118 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~~~--~~VtsVafSpd~g~lLaSgS-~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~ 118 (1630)
.++.+||+.||....++++. ..-.++..-. +.+++++. ....|.+|.+....... .. ..-.....++.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~--~~yllsaq~~rp~l~vw~i~k~~~~~------q~-~v~Pg~v~al~ 88 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALN--NEYLLSAQLKRPLLHVWEILKKDQVV------QY-IVLPGPVHALA 88 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhc--hhheeeecccCccccccccCchhhhh------hh-cccccceeeee
Confidence 34999999999999888855 2222222222 34555554 45678999875432211 00 01122345678
Q ss_pred EcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---------CCc
Q 000346 119 LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH---------TYA 189 (1630)
Q Consensus 119 ~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~---------t~~ 189 (1630)
.+|+|.+++.|...+ .|++|.+.+| ..+..+..|-..|+|+.|+-||.+|++|+.||.|.+|++. +-+
T Consensus 89 s~n~G~~l~ag~i~g-~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISG-NLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred cCCCceEEEeecccC-cEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 889999999888889 9999999999 7888889999999999999999999999999999999865 234
Q ss_pred EEEEEec-CCceeecCcccEEEcC--CCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEEC
Q 000346 190 VHYTLQL-DNTIKLLGAGAFAFHP--TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 190 ~i~tL~~-~~~V~IsGi~sVafSP--Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~ 266 (1630)
+.+.+.+ .-.|+ .+...+ ...+|++++.|.++++||+..+.. +.++. ....+.+++.+|-++.+..|++
T Consensus 166 p~~~f~~HtlsIT-----Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 166 PLHIFSDHTLSIT-----DLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ceeeeccCcceeE-----EEEecCCCccceEEEecCCceEEEEEecccee--eEEEe-cCCcceeEEEcccccEEEecCC
Confidence 5555654 56666 665554 456899999999999999999973 44443 3568999999999999999999
Q ss_pred CCceEEEEeee
Q 000346 267 DGSLQVWKTRV 277 (1630)
Q Consensus 267 DGtIrIWDl~~ 277 (1630)
+|.|.+.++..
T Consensus 238 ~G~I~~~~~~~ 248 (476)
T KOG0646|consen 238 EGKIFQNLLFK 248 (476)
T ss_pred cceEEeeehhc
Confidence 99998887763
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=137.06 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=166.8
Q ss_pred ccceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc-----EEEEE-------------cCCCC
Q 000346 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS-----RIASI-------------DINSP 63 (1630)
Q Consensus 3 W~t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~-----~i~tl-------------~~~~~ 63 (1630)
|.-.|...++ +...+ -|.+|.|..+|.+|++|.. |.|.++.-.... ....+ +....
T Consensus 12 w~f~~~~~~~-vtead----iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEK 86 (433)
T KOG1354|consen 12 WKFSQVFGLE-VTEAD----IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEK 86 (433)
T ss_pred hhhhhhhcce-echhc----ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhh
Confidence 4444544444 33445 7899999999999999999 778888644221 11122 22357
Q ss_pred EEEEEEeCC-CCCEEEEEECCCeEEEEECCCCcE--------------------EEEEcCCCCe---------EEeecCC
Q 000346 64 VVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQS--------------------FVLHSPEKKM---------ESISVDT 113 (1630)
Q Consensus 64 VtsVafSpd-~g~lLaSgS~DGtIrVWDl~tge~--------------------~v~fspdg~~---------asgs~Dg 113 (1630)
|..+.|.++ +...++..+.|.+|++|.+..... .....+.... +-++.-.
T Consensus 87 inkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 87 INKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYH 166 (433)
T ss_pred hhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeE
Confidence 899999976 234666777999999998754432 0011111111 1111112
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee--cCC-----CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 000346 114 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK--TDL-----KKPIVNLACHPR-LPVLYVAYADGLIRAYNI 185 (1630)
Q Consensus 114 tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il--~gH-----~~~ItsLafSPd-g~lLaSgS~DGtIrIWDl 185 (1630)
.-.+.+..|+..++++. |- .|.+|++.... .+..+. +.+ +.-|++..|||. .++|+-.+..|+|++-|+
T Consensus 167 iNSIS~NsD~Et~lSAD-dL-RINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-DL-RINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eeeeeecCccceEeecc-ce-eeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 23455566666666543 33 78999987543 333322 222 456889999994 467888888999999999
Q ss_pred CCCcEE----EEEec-CCceee-------cCcccEEEcCCCCEEEEEeCCCeEEEEECCC-CCceeEEEeeccC------
Q 000346 186 HTYAVH----YTLQL-DNTIKL-------LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-ERPSMIGIIQVGS------ 246 (1630)
Q Consensus 186 ~t~~~i----~tL~~-~~~V~I-------sGi~sVafSPDg~~LaSgS~DGtVrVWDl~t-gk~~lv~tL~gH~------ 246 (1630)
+..... ..+.. ..+..- ..+..+.|+++|+|+++-+ =-+|++||+.- .++ +.++..|.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~p--v~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKP--VETYPVHEYLRSKL 320 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCc--ceEEeehHhHHHHH
Confidence 944221 11111 111110 1244899999999998753 37899999953 444 55666654
Q ss_pred ------CCe---EEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 247 ------QPI---TSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 247 ------~~V---ssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..| ..++|+.++.+++|||....+++++..
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 122 457899999999999999999999954
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-09 Score=125.40 Aligned_cols=237 Identities=16% Similarity=0.222 Sum_probs=167.7
Q ss_pred CcEEEEEcCCCCEEEEEEC--C-eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 23 QPHEAAFHPNQALIAVAIG--T-YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--G-tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
.|--+-|+. .++|..+. + .+++.++..+..+..+....+|.+|.++.+ .|+++-.+ .|+|||+++.+.
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhT 121 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHT 121 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehh
Confidence 455556653 45555554 3 299999998988888887789999999865 56666554 499999998876
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEE-Ee-cCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFF-GF-HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg~~LaS-gs-~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSg 174 (1630)
...+.|+.+ +.+.+..+..+.+++. ++ +.+ .|.+||..+- +.+..+..|++.+-+++|+++|.+||++
T Consensus 122 I~t~~~n~~-------gl~AlS~n~~n~ylAyp~s~t~G-dV~l~d~~nl--~~v~~I~aH~~~lAalafs~~G~llATA 191 (391)
T KOG2110|consen 122 IETTPPNPK-------GLCALSPNNANCYLAYPGSTTSG-DVVLFDTINL--QPVNTINAHKGPLAALAFSPDGTLLATA 191 (391)
T ss_pred hhccCCCcc-------ceEeeccCCCCceEEecCCCCCc-eEEEEEcccc--eeeeEEEecCCceeEEEECCCCCEEEEe
Confidence 222222222 2233334444445544 22 234 8999999988 7888889999999999999999999999
Q ss_pred eCCCe-EEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC------c-----ee---
Q 000346 175 YADGL-IRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER------P-----SM--- 238 (1630)
Q Consensus 175 S~DGt-IrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk------~-----~l--- 238 (1630)
|..|+ |||+++.+++.++.|.- ...++ +++++|+|++++|++.+..++|+||.+.... + +.
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~---IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~ 268 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVS---IYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKV 268 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeE---EEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchh
Confidence 99887 69999999999999984 33332 5699999999999999999999999876321 0 00
Q ss_pred ---------------------EEEeeccCC---CeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 239 ---------------------IGIIQVGSQ---PITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 239 ---------------------v~tL~gH~~---~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
..+.+...+ .+..+.-.+....+..++.||.++.|.+...
T Consensus 269 sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 269 SKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 000011111 2223333356788889999999999988754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-10 Score=143.50 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=166.0
Q ss_pred CcEEEEEcC-CCCEEEEEEC-CeEEEEECCC-----C--cEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 23 QPHEAAFHP-NQALIAVAIG-TYIIEFDTLT-----G--SRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSP-dG~lLasgs~-GtI~VWDl~t-----g--~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
.|..++.++ ++.++++|++ |+|++||... + +...++. ..+++.++.+.+. ++.+|.++.||.|++.+++
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEEcCCCeEEEEEcc
Confidence 455666655 5599999999 8899999862 1 2334444 3488999999998 9999999999999999987
Q ss_pred CCcE-----EEEEcCCCCeEEeecCCe-EE--EEEcCCCC-EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEE
Q 000346 93 TEQS-----FVLHSPEKKMESISVDTE-VH--LALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLA 163 (1630)
Q Consensus 93 tge~-----~v~fspdg~~asgs~Dgt-v~--L~~spdg~-~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLa 163 (1630)
.... ....-++.+ .++. +. -.....+. .++.+...+ .|..||+++.+...........+.|++++
T Consensus 1129 ~~~~~~~~~~~~ri~n~~-----~~g~vv~m~a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLK-----KDGVVVSMHAFTAIVQSHVLVYATDLS-RIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred ccccccceeeeeeccccc-----CCCceEEeecccccccceeEEEEEecc-ceEEecchhhhhHHhhhcCccccceeEEE
Confidence 6221 111122211 1111 11 11122333 677777777 89999998875333333333467899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCC---CCEEEEEe--CCCeEEEEECCCCCc
Q 000346 164 CHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPT---LEWLFVGD--RRGTLLAWDVSIERP 236 (1630)
Q Consensus 164 fSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPD---g~~LaSgS--~DGtVrVWDl~tgk~ 236 (1630)
.+|.+.++++|+..|.+.+||++-+..+....+ ..+++ .+..+|. ..+.++++ ..+.|.+|++.++.+
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~-----~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIR-----HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcc-----eEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999999999999998888888876 45555 6666653 34555544 477899999999865
Q ss_pred eeEEEeecc-------------------CCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 237 SMIGIIQVG-------------------SQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 237 ~lv~tL~gH-------------------~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
..++... .-......+...+.++.+|+.|+.||.||.....
T Consensus 1278 --~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 --QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred --eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 3223221 1112233344456789999999999999976443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-11 Score=138.98 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=139.0
Q ss_pred EEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Q 000346 25 HEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP 102 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fsp 102 (1630)
.+++|+++|..|++++. |++|||++.....+.... ||+.|.++.|+|| +++|++.+.| ..+||+.+++.+.....|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 79999999999999998 889999988777666555 7799999999999 9999999999 999999999854222222
Q ss_pred CCCe--EEeecCCeEEEEEcCCCC--EEEEEecCCcEEEEEEcccCCc---cceeeecCCCCCeEEEEEcCCCCEEEEEe
Q 000346 103 EKKM--ESISVDTEVHLALTPLQP--VVFFGFHRRMSVTVVGTVEGGR---APTKIKTDLKKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 103 dg~~--asgs~Dgtv~L~~spdg~--~LaSgs~Dg~tI~IwDl~sg~~---~~i~il~gH~~~ItsLafSPdg~lLaSgS 175 (1630)
.++. .. .++....+.+. +++..-.++..|+.||+...+. -.......-...|.+++.+++|++++.|+
T Consensus 226 ~~k~~~~~-----~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 226 FSKDEMFS-----SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred cccchhhh-----hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 2111 10 01111111111 1111111111444444432210 11111222245799999999999999999
Q ss_pred CCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000346 176 ADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t 233 (1630)
.||.|-|++..+.++++..+. ...|+ .+.|+||.+++++.+.|....|..+.-
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT-----~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVT-----GLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeee-----eEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999998888888775 66777 999999999999988888888776553
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-12 Score=146.00 Aligned_cols=243 Identities=14% Similarity=0.189 Sum_probs=182.1
Q ss_pred CCccceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEE
Q 000346 1 MEWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80 (1630)
Q Consensus 1 meW~t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSg 80 (1630)
|+|.+-+...-.++ + . .|..+.|-++.+++|++-...+.|||-. |..+..++-+.+|..+.|.|. --+|+++
T Consensus 156 ~Dw~t~~L~~Ei~v-~-E----tv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLPy-HfLL~~~ 227 (545)
T KOG1272|consen 156 FDWVTKKLHFEINV-M-E----TVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLPY-HFLLVAA 227 (545)
T ss_pred eecccceeeeeeeh-h-h----hhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccch-hheeeec
Confidence 46777665443444 1 2 5889999999999999998999999966 888888888899999999998 7788889
Q ss_pred ECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeE
Q 000346 81 LEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 (1630)
Q Consensus 81 S~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~It 160 (1630)
+..|.++--|+.+|+....+. .....+..+..+|-+.++-.|...| +|.+|..... .+...+..|.++|.
T Consensus 228 ~~~G~L~Y~DVS~GklVa~~~-------t~~G~~~vm~qNP~NaVih~GhsnG-tVSlWSP~sk--ePLvKiLcH~g~V~ 297 (545)
T KOG1272|consen 228 SEAGFLKYQDVSTGKLVASIR-------TGAGRTDVMKQNPYNAVIHLGHSNG-TVSLWSPNSK--EPLVKILCHRGPVS 297 (545)
T ss_pred ccCCceEEEeechhhhhHHHH-------ccCCccchhhcCCccceEEEcCCCc-eEEecCCCCc--chHHHHHhcCCCcc
Confidence 999999999998887633332 1111223345567777888888899 9999998877 67777778999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEE-ECCCCCceeE
Q 000346 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW-DVSIERPSMI 239 (1630)
Q Consensus 161 sLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVW-Dl~tgk~~lv 239 (1630)
+++++++|.++++++.|..++|||+++...+.++....... .+++|..| +++++....|.|| |.-.+....-
T Consensus 298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~-----~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~ 370 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPAS-----NLSLSQKG--LLALSYGDHVQIWKDALKGSGHGE 370 (545)
T ss_pred eEEECCCCcEEeecccccceeEeeeccccccceeecCCCcc-----cccccccc--ceeeecCCeeeeehhhhcCCCCCC
Confidence 99999999999999999999999999887666665544455 77888665 4455556789999 4443221011
Q ss_pred EEeecc--CCCeEEEEEeCCCCEEEEEECCC
Q 000346 240 GIIQVG--SQPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 240 ~tL~gH--~~~VssVsfSPdG~lLaSgS~DG 268 (1630)
..+..| ...|..+.|+|-...|-.|..-|
T Consensus 371 ~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 371 TPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cchhhhccCcccccceeccHHHeeeccccCC
Confidence 112222 25899999999877877766555
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-09 Score=120.79 Aligned_cols=171 Identities=19% Similarity=0.267 Sum_probs=133.2
Q ss_pred EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---EE--EEcCCCCeEEeecCCeEEEE
Q 000346 44 IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---FV--LHSPEKKMESISVDTEVHLA 118 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---~v--~fspdg~~asgs~Dgtv~L~ 118 (1630)
|.|||-...+++.++....+|.+|++.++ .||+. ..+.|+||.+.+.-. .+ ..+|.| .+.+.
T Consensus 77 viIWDD~k~~~i~el~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG---------lC~~~ 143 (346)
T KOG2111|consen 77 VIIWDDLKERCIIELSFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG---------LCSLC 143 (346)
T ss_pred EEEEecccCcEEEEEEeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCc---------eEeec
Confidence 99999888889999998899999999877 56655 457999999874422 11 122333 23333
Q ss_pred EcCCCCEEEEEe-cCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCcEEEEEec
Q 000346 119 LTPLQPVVFFGF-HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGL-IRAYNIHTYAVHYTLQL 196 (1630)
Q Consensus 119 ~spdg~~LaSgs-~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGt-IrIWDl~t~~~i~tL~~ 196 (1630)
-+....+|++-+ .-| .|.+.|+.........+...|...|.|++.+-+|..+|++|..|+ |||||..+++.+..+.-
T Consensus 144 ~~~~k~~LafPg~k~G-qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTG-QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCCCceEEEcCCCccc-eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 333334455433 345 999999987742245788899999999999999999999999887 79999999999999874
Q ss_pred ---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000346 197 ---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 197 ---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t 233 (1630)
...|. +++|||+..+|+++|+.|+|+|+.++.
T Consensus 223 G~d~A~iy-----~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIY-----CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCchheEE-----EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 45565 999999999999999999999998775
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-11 Score=140.66 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=159.1
Q ss_pred eeeeccCCCCCCCCcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEc-CC-CCEEEEEEeCCC-CCEEEEEECCCe
Q 000346 10 DLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASID-IN-SPVVRMAYSPTS-GHAVVAILEDCT 85 (1630)
Q Consensus 10 elqhvGrg~skp~rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~-~~-~~VtsVafSpd~-g~lLaSgS~DGt 85 (1630)
+..-.||.+ -|+|+.|+.+|.+|++|++++ +.|||....+.+..+. +| ..|.++.|-|.. ...+++|..|..
T Consensus 43 E~eL~GH~G----CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 43 EAELTGHTG----CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhhccccc----eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 334456666 899999999999999999966 9999999888888888 66 999999999863 457888999999
Q ss_pred EEEEECCCCcE-EEEEcCCCCe--EEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCC------
Q 000346 86 IRSCDFDTEQS-FVLHSPEKKM--ESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL------ 155 (1630)
Q Consensus 86 IrVWDl~tge~-~v~fspdg~~--asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH------ 155 (1630)
|+++|+...+. .......... ..++.+..-+++..|.+ +.+.+++.|| +|+-+|+++.+ .|......|
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG-tirQyDiREph-~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG-TIRQYDIREPH-VCNPDEDCPSILVNY 196 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc-ceeeecccCCc-cCCccccccHHHHHh
Confidence 99999975322 1222221111 33555566677888888 5788999999 99999999876 444333222
Q ss_pred ---CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCC--------C----------cEEEEEec-----CCc-e--eecCc
Q 000346 156 ---KKPIVNLACHPR-LPVLYVAYADGLIRAYNIHT--------Y----------AVHYTLQL-----DNT-I--KLLGA 205 (1630)
Q Consensus 156 ---~~~ItsLafSPd-g~lLaSgS~DGtIrIWDl~t--------~----------~~i~tL~~-----~~~-V--~IsGi 205 (1630)
--...|+..+|. ..+|++|+.|-..++||.+. + .|+..+.. ... . .+.+.
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 234678999994 45899999999999999541 1 12322221 000 0 00124
Q ss_pred ccEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 000346 206 GAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 206 ~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~ 236 (1630)
+.++|+|+|.-|++.-....|+++|+..++.
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 5789999998888877777899999998765
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-10 Score=127.01 Aligned_cols=258 Identities=15% Similarity=0.198 Sum_probs=168.0
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC--CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~--~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.+..++||+.-.-++++.. +.|++||-.. .+...+++. ..|++++|-|.++..|+.|+. +-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t----- 172 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT----- 172 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc-----
Confidence 5788999996666777776 7799999886 555566643 789999999997777887776 56888975311
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCC
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADG 178 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS-~DG 178 (1630)
.. ....++. ..+.+ ..+....+| .+|++++|++||..+++++ .|.
T Consensus 173 ----ln-----~~r~~~~-----------------------~s~~~-~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 173 ----LN-----ANRNIRM-----------------------MSTHH-LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred ----cc-----ccccccc-----------------------ccccc-hhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 00 0000000 00111 222233445 7899999999999999888 678
Q ss_pred eEEEEEcCCCcEEEEEe-cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 179 LIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~-~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
.|.|||.+++..+.... +.+.+. -+.||||+.+|++++-|+..++|+...... ...-. ...+.|...+|+|+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~s-----lLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~-lgsgrvqtacWspc 291 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFS-----LLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWI-LGSGRVQTACWSPC 291 (445)
T ss_pred eEEEEcCCCCCcccccccCCCcee-----eEEEcCCCCEEEEecccceeeeehhcccce-eccee-ccCCceeeeeecCC
Confidence 99999999998776653 366676 899999999999999999999995543211 11112 23459999999999
Q ss_pred CCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCccccc----cccccccccCCcccccCCCeEEEEeCCCCCceeE
Q 000346 258 LRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESI----DIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVL 333 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I~sl----Di~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Al 333 (1630)
|++|...+ .|.=++|.+.....+. .+..+.++..+ |.+.+-...+... --....+++|.|+-+..|.
T Consensus 292 GsfLLf~~-sgsp~lysl~f~~~~~------~~~~~~~~k~~lliaDL~e~ti~ag~~l--~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 292 GSFLLFAC-SGSPRLYSLTFDGEDS------VFLRPQSIKRVLLIADLQEVTICAGQRL--CCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred CCEEEEEE-cCCceEEEEeecCCCc------cccCcccceeeeeeccchhhhhhcCccc--ccCccceeeECCCCCEEEE
Confidence 99776544 3445567665333211 11112233222 3222222222111 1234567899999999998
Q ss_pred eecc
Q 000346 334 LFAN 337 (1630)
Q Consensus 334 vfa~ 337 (1630)
+|..
T Consensus 363 ~fKg 366 (445)
T KOG2139|consen 363 IFKG 366 (445)
T ss_pred EEcC
Confidence 7765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=128.12 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=169.3
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
+|.-+.|..|..+++.+.. +.|.+|++...+....++ +..++.+++|||++.+.|.+...|-.|.||.+.+.++
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 5677889988888888877 469999999999988888 5599999999999446777777899999999988765
Q ss_pred --------EEEEcCCCCe-EEeec-CCe------------------------EEEEEcCCCCEEEEEecCCcEEEEEEcc
Q 000346 97 --------FVLHSPEKKM-ESISV-DTE------------------------VHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1630)
Q Consensus 97 --------~v~fspdg~~-asgs~-Dgt------------------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~ 142 (1630)
.++|+++|++ +..+. |.. ..+-++|+|. .+.+||..
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~----------~laVwd~~ 199 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN----------WLAVWDNV 199 (447)
T ss_pred cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc----------EEEEecch
Confidence 7889999998 33332 211 3345667765 55666643
Q ss_pred cCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEE------------------------------
Q 000346 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY------------------------------ 192 (1630)
Q Consensus 143 sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~------------------------------ 192 (1630)
-.. .+..+. -.-.+..++|+|.+++|++|+.|+.+||.+--+.+...
T Consensus 200 Ley--kv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 200 LEY--KVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred hhh--eeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 321 111111 13468889999999999999999999986543221110
Q ss_pred ------------------------------EEec----CCceeecCcccEEEcCCCCEEEEEeC--CCeEEEEECCCCCc
Q 000346 193 ------------------------------TLQL----DNTIKLLGAGAFAFHPTLEWLFVGDR--RGTLLAWDVSIERP 236 (1630)
Q Consensus 193 ------------------------------tL~~----~~~V~IsGi~sVafSPDg~~LaSgS~--DGtVrVWDl~tgk~ 236 (1630)
.++. .++ -.|+..++|++|..|+++-.+ -+.+-+||++..+
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP--k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~- 353 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP--KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK- 353 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc--ccccceeeecCCceEEeeecCCCCceEEEEechhhh-
Confidence 0000 000 045778999999999988765 3578999999876
Q ss_pred eeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 237 SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 237 ~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
+..+-....+|....|+|....|+.+.....+++|-..
T Consensus 354 --l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 354 --LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred --hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 33333345789999999999888888877789999654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=136.74 Aligned_cols=246 Identities=14% Similarity=0.194 Sum_probs=171.3
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCC--C--cEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLT--G--SRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~t--g--~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
.++|.++||+++++|+|.. |.|.+|.-.. + .....+. ||..|.+++|+++ |.+|.+|+..|.+.+|...+++.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC-CceEeecccceEEEEEeecCCCc
Confidence 4799999999999999998 8899996543 2 2244555 7799999999999 99999999999999999999876
Q ss_pred -----------EEEEcCCCCe-EEeecCCeEEEEE---------------------------------cCCCCEEEEEec
Q 000346 97 -----------FVLHSPEKKM-ESISVDTEVHLAL---------------------------------TPLQPVVFFGFH 131 (1630)
Q Consensus 97 -----------~v~fspdg~~-asgs~Dgtv~L~~---------------------------------spdg~~LaSgs~ 131 (1630)
.+.++|++.. .....|..+.+.. .|.-+.++..+.
T Consensus 286 qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 286 QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 6778899988 5555666644332 222234445556
Q ss_pred CCcEEEEEEcccCCccceeee-----c------CCCCCeEEEEEcCCCCEEEEEe--------CC--CeEEEEEcCCCcE
Q 000346 132 RRMSVTVVGTVEGGRAPTKIK-----T------DLKKPIVNLACHPRLPVLYVAY--------AD--GLIRAYNIHTYAV 190 (1630)
Q Consensus 132 Dg~tI~IwDl~sg~~~~i~il-----~------gH~~~ItsLafSPdg~lLaSgS--------~D--GtIrIWDl~t~~~ 190 (1630)
.+ +|.+||+.+.+ .+..+ . .+.-.++.++.+..|.++++.- .| -.+|+|-......
T Consensus 366 ~g-~vQ~ydl~td~--~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 366 PG-HVQFYDLYTDS--TIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred Cc-eEEEEeccccc--eeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 67 89999988763 22222 1 1233567778888888888864 23 3578897665444
Q ss_pred EEEEe------cCCceeecCcccEEEcCCCC-EEEEEeCCCeEEEEECCCC--------CceeEEEeeccCCCeEEEEEe
Q 000346 191 HYTLQ------LDNTIKLLGAGAFAFHPTLE-WLFVGDRRGTLLAWDVSIE--------RPSMIGIIQVGSQPITSVAWL 255 (1630)
Q Consensus 191 i~tL~------~~~~V~IsGi~sVafSPDg~-~LaSgS~DGtVrVWDl~tg--------k~~lv~tL~gH~~~VssVsfS 255 (1630)
-..+. |+..+. ..+..++... .+++++.||.++||-+... ...|...-.-|..++++++|+
T Consensus 443 t~~L~T~I~~PH~~~~v----at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 443 TFILNTKINNPHGNAFV----ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred eeEEEEEEecCCCceeE----EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 33333 222222 1333344333 7899999999999977321 111222222478899999999
Q ss_pred CCCCEEEEEECCCceEEEEeee
Q 000346 256 PMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 256 PdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
.||.+| +.|.|++|.+||..+
T Consensus 519 ~dGsll-a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWDYDT 539 (792)
T ss_pred CCCcEE-EEecCCEEEEecCCC
Confidence 999655 557799999999875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=135.83 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=145.9
Q ss_pred CcEEEEEcCCCCEEEEEEC--C--eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEE-ECCC--eEEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG--T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI-LEDC--TIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--G--tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSg-S~DG--tIrVWDl~tge 95 (1630)
.+.+.+|||||+.|+..+. + .|.+|++.+++........+.+..++|+|| |+.|+.. +.++ .|++||+++++
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD-G~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCC-CCEEEEEEcCCCCcEEEEEECCCCC
Confidence 5789999999999987653 2 399999998875444333344567899999 8877754 4444 58899998776
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC--cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg--~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
...... .........++|++..|++.+++. ..|..+|..++ .. ..+..+.....+..|+|||++|+.
T Consensus 279 ~~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~-~~lt~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 279 IRQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--AP-QRITWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred EEEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--Ce-EEeecCCCCccCEEECCCCCEEEE
Confidence 422111 111234567899999887776543 14445565554 22 233334445667899999999887
Q ss_pred EeCC---CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCe---EEEEECCCCCceeEEEeeccCC
Q 000346 174 AYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT---LLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~D---GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGt---VrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.+.+ ..|.+||+.++... .+....... ...|+|||++|+.++.++. +.++++.... ...+.+|..
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~-----~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~---~~~l~~~~~ 418 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ-VLTDTFLDE-----TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDG 418 (429)
T ss_pred EEccCCCceEEEEECCCCCeE-EeCCCCCCC-----CceECCCCCEEEEEEcCCCceEEEEEECCCCC---eEECccCCC
Confidence 6643 35889999887643 333322233 7889999999999887764 6677775333 566778888
Q ss_pred CeEEEEEeCC
Q 000346 248 PITSVAWLPM 257 (1630)
Q Consensus 248 ~VssVsfSPd 257 (1630)
.+...+|+|-
T Consensus 419 ~~~~p~Wsp~ 428 (429)
T PRK03629 419 QVKFPAWSPY 428 (429)
T ss_pred CcCCcccCCC
Confidence 8999999873
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-11 Score=140.71 Aligned_cols=231 Identities=10% Similarity=0.098 Sum_probs=183.9
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-EE
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FV 98 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-~v 98 (1630)
-+.+..+.++.+|++|+.|+. |+|-.+|+.+++....+.....|+++.|..+ .+++|++ ....++|||-..-+. |+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn-eq~~AVA-QK~y~yvYD~~GtElHCl 206 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN-EQFFAVA-QKKYVYVYDNNGTELHCL 206 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc-hHHHHhh-hhceEEEecCCCcEEeeh
Confidence 346789999999999999999 9999999999999988888889999999887 7888777 567899999543332 22
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
.- .....++-|.|-.-+|++++..+ .++..|+.+| +.+..+..-.+.+..+.-+|-+..+-+|...|
T Consensus 207 k~----------~~~v~rLeFLPyHfLL~~~~~~G-~L~Y~DVS~G--klVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 207 KR----------HIRVARLEFLPYHFLLVAASEAG-FLKYQDVSTG--KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred hh----------cCchhhhcccchhheeeecccCC-ceEEEeechh--hhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 11 22345667778777788888888 9999999999 67766666678888999999988999999999
Q ss_pred eEEEEEcCCCcEEEEEe-cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 179 LIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~-~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
+|.+|...+.+++..+- |.++|. +++++++|+|++|++.|+.++|||++.... +.++.. ..+...+++|..
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~-----siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--l~t~~t-p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVS-----SIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--LHTYRT-PHPASNLSLSQK 345 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcc-----eEEECCCCcEEeecccccceeEeeeccccc--cceeec-CCCccccccccc
Confidence 99999988877655444 589999 999999999999999999999999998653 434433 346678888876
Q ss_pred CCEEEEEECCCceEEEEee
Q 000346 258 LRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 258 G~lLaSgS~DGtIrIWDl~ 276 (1630)
|- +.+|....|.||.=.
T Consensus 346 gl--LA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 346 GL--LALSYGDHVQIWKDA 362 (545)
T ss_pred cc--eeeecCCeeeeehhh
Confidence 53 344555689999643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.1e-08 Score=117.72 Aligned_cols=244 Identities=12% Similarity=0.096 Sum_probs=168.3
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc---------------EEEEEcCC-CCEEEEEEeCCCCCEEEEEECCC
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS---------------RIASIDIN-SPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~---------------~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DG 84 (1630)
.+.+|++|+....++++|+. |.++|..+.+.. .-+++++| +.|.-+.|+.. .+.|-+...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCCc
Confidence 37889999999999999999 778888765321 23456766 89999999988 88999999999
Q ss_pred eEEEEECCCCcE--------------EEEEcCCCCe-EEeecCCe---------------------EEEEEcCCCCEEEE
Q 000346 85 TIRSCDFDTEQS--------------FVLHSPEKKM-ESISVDTE---------------------VHLALTPLQPVVFF 128 (1630)
Q Consensus 85 tIrVWDl~tge~--------------~v~fspdg~~-asgs~Dgt---------------------v~L~~spdg~~LaS 128 (1630)
.|.||-+-.|.. +++|..+|.. .....||. .++.+++|...+++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 999998866643 7788888876 33344443 23344555555555
Q ss_pred EecCCcEEEEEEcccCC-----cccee----eecCCCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEEcCCCcEE
Q 000346 129 GFHRRMSVTVVGTVEGG-----RAPTK----IKTDLKKPIVNLACH--------PRLPVLYVAYADGLIRAYNIHTYAVH 191 (1630)
Q Consensus 129 gs~Dg~tI~IwDl~sg~-----~~~i~----il~gH~~~ItsLafS--------Pdg~lLaSgS~DGtIrIWDl~t~~~i 191 (1630)
+-..+ .+.++|.+... ..|.. .+......|..+.|. ||...|+++...|.+.|..-.+...-
T Consensus 174 ~~ang-e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 174 KKANG-ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhcCC-cEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 55666 77778765431 12211 112223345666663 47779999999999888754433222
Q ss_pred EEEecCCceeecCcccEEEcCCCCEEEEEeCCC---------eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEE
Q 000346 192 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---------TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLV 262 (1630)
Q Consensus 192 ~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DG---------tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLa 262 (1630)
..+...-.+. ...|+++|..|++++.+. .|.+|..- |+ .+.+++.....|++++|-..|-.++
T Consensus 253 vv~dtgm~~v-----gakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~--i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 253 VVVDTGMKIV-----GAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GH--IVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred eEEecccEee-----cceecCCCcEEEEccCcccccCccccceEEEeccc-hh--heEEEecCCceeeeeEEcCCceEEE
Confidence 2222233444 889999999999988532 45555433 44 3788888889999999998887776
Q ss_pred EEECCCceEEEEee
Q 000346 263 TLCRDGSLQVWKTR 276 (1630)
Q Consensus 263 SgS~DGtIrIWDl~ 276 (1630)
.+ .|+.|++=+++
T Consensus 325 ~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 325 IA-VDSFIYFANIR 337 (1189)
T ss_pred EE-ecceEEEEeec
Confidence 64 58899887776
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-11 Score=148.87 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=160.5
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-EEE
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-~v~ 99 (1630)
.|+|+.|...|.++++|+++. |+||..+++.++....+| +.|+.++.+.+ ..++++++.|..|++|.+.++.. .+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl~~~~pvsvL 270 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRLPDGAPVSVL 270 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEecCCCchHHHH
Confidence 599999999999999999966 999999999999999977 99999999988 88999999999999999987754 111
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccce----------------------------ee
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT----------------------------KI 151 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i----------------------------~i 151 (1630)
+ ++......+.++|-. +.+.|+ ++++||++-..+... ..
T Consensus 271 r--------ghtgavtaiafsP~~----sss~dg-t~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 271 R--------GHTGAVTAIAFSPRA----SSSDDG-TCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred h--------ccccceeeeccCccc----cCCCCC-ceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 1 222222334444433 444555 666666551100000 00
Q ss_pred ecCCCCCeEEEEEcCCCCEE-----------EEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcC-CCCEEE
Q 000346 152 KTDLKKPIVNLACHPRLPVL-----------YVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHP-TLEWLF 218 (1630)
Q Consensus 152 l~gH~~~ItsLafSPdg~lL-----------aSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSP-Dg~~La 218 (1630)
........-+++|+...-.+ +++-.+-.+++|++.++...+.+.+ ...+. .+.+|| +.+...
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y-----vLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY-----VLDVHPFNPRIAM 412 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccccee-----eeeecCCCcHhhh
Confidence 00001122223333222222 2233445577788777777766665 56665 889999 555667
Q ss_pred EEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 219 VGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 219 SgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
+++.||...|||+-.+.+ +.....+| ..+..-.|++||..++....-|.++|.......
T Consensus 413 sag~dgst~iwdi~eg~p-ik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIP-IKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hccCCCceEeeecccCCc-ceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 888999999999998876 22233454 456678999999999988888999998776433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-10 Score=125.43 Aligned_cols=196 Identities=10% Similarity=0.080 Sum_probs=144.2
Q ss_pred CCCcEEEEEcCCCCE-EEEEECCe-EEEEECCCCcE----EEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCC
Q 000346 21 PLQPHEAAFHPNQAL-IAVAIGTY-IIEFDTLTGSR----IASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1630)
Q Consensus 21 p~rV~~LaFSPdG~l-Lasgs~Gt-I~VWDl~tg~~----i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tg 94 (1630)
...+++.+|+.-.+. +.+++-++ ..|||++++.. .+.+-|...|.+++|...+.+.+|+.+.||+||+||++..
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence 447889999885554 44444466 99999998732 3333466999999999876789999999999999999876
Q ss_pred cE-EEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC-CCEE
Q 000346 95 QS-FVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-LPVL 171 (1630)
Q Consensus 95 e~-~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd-g~lL 171 (1630)
+. .+.+..... .+.-.++.+++.. +++++-..|...|.+.|++... .++..+.+|...|..++|.|. ...|
T Consensus 230 eHSTIIYE~p~~-----~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 230 EHSTIIYEDPSP-----STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred ccceEEecCCCC-----CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCcee
Confidence 54 444443321 2233566666655 4666666666689999999887 888999999999999999994 5689
Q ss_pred EEEeCCCeEEEEEcCCCc------EEEEEecCCceeecCcccEEEcC-CCCEEEEEeCCCeEEE
Q 000346 172 YVAYADGLIRAYNIHTYA------VHYTLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLA 228 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~------~i~tL~~~~~V~IsGi~sVafSP-Dg~~LaSgS~DGtVrV 228 (1630)
++|++|..+.+||+...- ++.....+..|+ .+.|++ .+.+++.+.. +.+.+
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVN-----qi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVN-----QIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhhhccceee-----eeeecccCCCEEEEEec-CeeeE
Confidence 999999999999997532 122222367788 999997 5678888763 44433
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-10 Score=127.17 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=168.3
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc---EEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS---RIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~---~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
..|+|.+|++|+..+|++.. ..|.||...... ...++. |...|+.|+|+|. .+.|++|+.|..-+||....+..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCCCe
Confidence 37999999999999999998 459999887654 567777 5599999999999 99999999999999999843322
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccC--CccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG--GRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg--~~~~i~il~gH~~~ItsLafSPdg~lLaSg 174 (1630)
|-|.-- +.-.......+-++|..+.+++|+..+ .|.+|-.+.. +.-..++...+...|++++|||++-+|+.|
T Consensus 90 ---Wkptlv-LlRiNrAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 90 ---WKPTLV-LLRINRAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred ---ecccee-EEEeccceeeEeecCcCceEEeccCcc-EEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 111000 001111235677888888888888888 7777776543 223445667778899999999999999999
Q ss_pred eCCCeEEEEEcCC------------------CcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 175 YADGLIRAYNIHT------------------YAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 175 S~DGtIrIWDl~t------------------~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
+.|+..||+..-- |..+..+.. .+++. .+.|+|+|..|+-.+.|.++.+-|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh-----~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH-----GVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee-----eeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999997420 122333322 56676 99999999999999999999999887654
Q ss_pred ceeEEEeeccCCCeEEEEEeCCCCEEEEEECC
Q 000346 236 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 236 ~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D 267 (1630)
. .+.++....-+..++.|-.+.. ++.++.|
T Consensus 240 ~-~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 240 E-RVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred h-hccchhhccCCceeeEeecCCc-eeecCCC
Confidence 2 1333333336777777765533 3333444
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-10 Score=137.93 Aligned_cols=228 Identities=15% Similarity=0.130 Sum_probs=157.4
Q ss_pred eEEEEECCCC-cEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcC
Q 000346 43 YIIEFDTLTG-SRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTP 121 (1630)
Q Consensus 43 tI~VWDl~tg-~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~sp 121 (1630)
.+.||++... ..-..+.....|++++|+|...++++.|..+|.|.+||+..+.... -++-......+.+..+.+.+..
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEec
Confidence 4889999866 4445555669999999999878999999999999999997664311 0000011223344444444433
Q ss_pred C--CCEEEEEecCCcEEEEEEcccCCccceeee-----c------CCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 000346 122 L--QPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-----T------DLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHT 187 (1630)
Q Consensus 122 d--g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-----~------gH~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t 187 (1630)
+ +.-+++++.|| .|..|+++.-+ .+.... . .-...++++.|.+ +-..|++|+.+|.|.--+...
T Consensus 302 ~~~~~~f~s~ssDG-~i~~W~~~~l~-~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDG-SICSWDTDMLS-LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred cCCCCceEEEecCC-cEeeeeccccc-cchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 3 34599999999 99999987654 222111 1 1134678999998 556799999999987733222
Q ss_pred CcE--------EEEEe-cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECC-CCCceeEEEeeccCCCeEEEEEeCC
Q 000346 188 YAV--------HYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS-IERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 188 ~~~--------i~tL~-~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~-tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
.+. +..+. |.+.|. ++.++|-+..++..+.|-+|+||... ...+ +..+..+...|++++|||.
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~-----~v~~nPF~~k~fls~gDW~vriWs~~~~~~P--l~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVY-----AVSRNPFYPKNFLSVGDWTVRIWSEDVIASP--LLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred CcccccccccccccccccCcceE-----eeecCCCccceeeeeccceeEeccccCCCCc--chhhhhccceeeeeEEcCc
Confidence 211 11111 366676 99999977655555559999999877 4554 5566677788999999997
Q ss_pred CC-EEEEEECCCceEEEEeeeecC
Q 000346 258 LR-LLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 258 G~-lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
.. .|+++..||.+.+||+.....
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred CceEEEEEcCCCceehhhhhcccc
Confidence 54 778888999999999975444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=127.27 Aligned_cols=212 Identities=12% Similarity=0.065 Sum_probs=141.6
Q ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEE---CCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEE
Q 000346 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL---EDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS---~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~ 119 (1630)
.|.+||...........+...+.+.+|+|| |+.|+..+ .+..|++|++.+++....... ........+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--------~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQVASF--------PRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEccCC--------CCCcCCeEE
Confidence 499999886654444445578999999999 88888654 245799999988764211111 111224678
Q ss_pred cCCCCEEEEEe-cCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCcEEEEE
Q 000346 120 TPLQPVVFFGF-HRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-G--LIRAYNIHTYAVHYTL 194 (1630)
Q Consensus 120 spdg~~LaSgs-~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D-G--tIrIWDl~t~~~i~tL 194 (1630)
+|+|..|+... .++ ..|.+||+.++ .... +..+...+....|+|||+.|+..+.+ + .|.++|+.++......
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg--~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASG--QIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCC--CEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 89998777653 232 26889998876 4333 33344567889999999988777754 4 4555567666543322
Q ss_pred ecCCceeecCcccEEEcCCCCEEEEEeCC---CeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCc--
Q 000346 195 QLDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS-- 269 (1630)
Q Consensus 195 ~~~~~V~IsGi~sVafSPDg~~LaSgS~D---GtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGt-- 269 (1630)
....... ...|+|||++|+..+.+ ..|.+||+.+++. ..+.. .....+..|+|||++|+.++.|+.
T Consensus 328 ~~~~~~~-----~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~ 398 (429)
T PRK03629 328 WEGSQNQ-----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGS 398 (429)
T ss_pred cCCCCcc-----CEEECCCCCEEEEEEccCCCceEEEEECCCCCe---EEeCC-CCCCCCceECCCCCEEEEEEcCCCce
Confidence 2233444 78999999999877643 3588899988873 33332 223457889999999999998875
Q ss_pred -eEEEEe
Q 000346 270 -LQVWKT 275 (1630)
Q Consensus 270 -IrIWDl 275 (1630)
+.+|++
T Consensus 399 ~l~~~~~ 405 (429)
T PRK03629 399 VLNLVST 405 (429)
T ss_pred EEEEEEC
Confidence 444544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-10 Score=126.86 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=143.1
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecC
Q 000346 75 HAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1630)
Q Consensus 75 ~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g 154 (1630)
..+|++...|+|++||..+++..-.|+-.. .....+++........+.+++.|| +|++||++.........+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-----~~~N~vrf~~~ds~h~v~s~ssDG-~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-----ATTNGVRFISCDSPHGVISCSSDG-TVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC-----CcccceEEecCCCCCeeEEeccCC-eEEEEEeecchhhhheeccC
Confidence 568888899999999999876633333110 011223444433556799999999 99999999876456666666
Q ss_pred CC-CCeEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCcE-EEEEe--cCCceeecCcccEEEcC-CCCEEEEEeCCCe
Q 000346 155 LK-KPIVNLACHPRLPVLYVAY----ADGLIRAYNIHTYAV-HYTLQ--LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGT 225 (1630)
Q Consensus 155 H~-~~ItsLafSPdg~lLaSgS----~DGtIrIWDl~t~~~-i~tL~--~~~~V~IsGi~sVafSP-Dg~~LaSgS~DGt 225 (1630)
|. .+..+++.+-+++.+++|+ .|-.|.+||+|..+. +..+. |.+.|+ ++.||| +.+.|++||.||.
T Consensus 115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT-----~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT-----QLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce-----eEEecCCCCCeEEeecccce
Confidence 65 5667787777788888886 567899999998765 55554 378888 999999 5689999999999
Q ss_pred EEEEECCCCC--ceeEEEeeccCCCeEEEEEeCCC-CEEEEEECCCceEEEEeeeec
Q 000346 226 LLAWDVSIER--PSMIGIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 226 VrVWDl~tgk--~~lv~tL~gH~~~VssVsfSPdG-~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
|.|||+.... -.++.+ -.|...|.++.|+.++ +.|.+.+..++..+|++....
T Consensus 190 vnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred EEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9999998541 112223 3467889999999887 458888999999999987443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-08 Score=127.32 Aligned_cols=206 Identities=14% Similarity=0.092 Sum_probs=133.2
Q ss_pred EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECC---CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEc
Q 000346 44 IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~D---GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~s 120 (1630)
|.+||...........+...+.+.+|+|+ |+.|+..+.+ ..|++||+.+++....... ........++
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--------~g~~~~~~~S 248 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRVVANF--------KGSNSAPAWS 248 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEEeecC--------CCCccceEEC
Confidence 77888754333333335588999999999 8888877643 4599999988865221111 1122456789
Q ss_pred CCCCEEEE-EecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEc--CCCcEEEEEec
Q 000346 121 PLQPVVFF-GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNI--HTYAVHYTLQL 196 (1630)
Q Consensus 121 pdg~~LaS-gs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-DGtIrIWDl--~t~~~i~tL~~ 196 (1630)
|++..++. .+.++ ...+|.+.... .....+..|.....+..|+|||+.|+..+. ++...||.+ .++........
T Consensus 249 PDG~~la~~~~~~g-~~~Iy~~d~~~-~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~ 326 (427)
T PRK02889 249 PDGRTLAVALSRDG-NSQIYTVNADG-SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT 326 (427)
T ss_pred CCCCEEEEEEccCC-CceEEEEECCC-CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC
Confidence 99987764 45555 55555543221 223445555556677899999998876653 456666654 44443322222
Q ss_pred CCceeecCcccEEEcCCCCEEEEEeCCC---eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCc
Q 000346 197 DNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 269 (1630)
Q Consensus 197 ~~~V~IsGi~sVafSPDg~~LaSgS~DG---tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGt 269 (1630)
..... ..+|+|||++|+..+.++ .|.+||+.+++. ..+..+ .......|+|||+.|+.++.++.
T Consensus 327 g~~~~-----~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 327 GSYNT-----SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCCcC-----ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---EEccCC-CCccCceECCCCCEEEEEEecCC
Confidence 22333 689999999998877654 699999998873 333322 34568899999999888876553
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-10 Score=131.41 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=142.6
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccC
Q 000346 65 VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 65 tsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg 144 (1630)
..++|+.+ |..+++|+.||++|+|++.......... .+....-.+.++|++..|++.+.+. .++|++.++
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~-------~~~~eV~DL~FS~dgk~lasig~d~--~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEI-------AHHAEVKDLDFSPDGKFLASIGADS--ARVWSVNTG 217 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhH-------hhcCccccceeCCCCcEEEEecCCc--eEEEEeccC
Confidence 68899999 9999999999999999975543311111 1122234567788888888877774 689999888
Q ss_pred Cccceeeec--CCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEEcCCCcEEEEEe------cCCceeecCcccEEEc
Q 000346 145 GRAPTKIKT--DLKKPIVNLACHPRL-----PVLYVAYADGLIRAYNIHTYAVHYTLQ------LDNTIKLLGAGAFAFH 211 (1630)
Q Consensus 145 ~~~~i~il~--gH~~~ItsLafSPdg-----~lLaSgS~DGtIrIWDl~t~~~i~tL~------~~~~V~IsGi~sVafS 211 (1630)
.++..+. +-+.....+.|+.|+ .++++....+.|+.||+..+.--..+. ..+.|. +++.+
T Consensus 218 --~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS-----sl~VS 290 (398)
T KOG0771|consen 218 --AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS-----SLAVS 290 (398)
T ss_pred --chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce-----eEEEc
Confidence 4444443 223345677888776 233444455677777766443211111 145666 99999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 212 PTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 212 PDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+||++++.|+.||.|-|++..+-+. +...-+.|...|+.+.|+||.+++++.|.|....|..+..
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCCcEEEEeccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999999997764 3445568999999999999999999999999999998875
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=118.46 Aligned_cols=111 Identities=22% Similarity=0.415 Sum_probs=88.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC---CCeEEEE
Q 000346 155 LKKPIVNLACHPRLPVLYVAY--ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAW 229 (1630)
Q Consensus 155 H~~~ItsLafSPdg~lLaSgS--~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~---DGtVrVW 229 (1630)
..++|.+++|+|+|+.|++.. .++.|.+||++ ++.+..+. ...++ .+.|+|+|++|++++. .|.|.+|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n-----~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRN-----TISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCce-----EEEECCCCCEEEEEEccCCCcEEEEE
Confidence 355799999999999876654 56799999997 56666654 45667 8999999999999874 4679999
Q ss_pred ECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEEC------CCceEEEEee
Q 000346 230 DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR------DGSLQVWKTR 276 (1630)
Q Consensus 230 Dl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~------DGtIrIWDl~ 276 (1630)
|.++.+. +.... | ..++.+.|+|||++|++++. |+.++||+..
T Consensus 131 d~~~~~~--i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 131 DVRKKKK--ISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ECCCCEE--eeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9997664 54443 3 35789999999999998874 7789999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-08 Score=125.65 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=138.5
Q ss_pred eEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEEC---CCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEE
Q 000346 43 YIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILE---DCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLA 118 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~---DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~ 118 (1630)
.|.+||...... +.+. +...+.+.+|+|| |+.|+..+. +..|++||+.+++....- ..........
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~~l~--------~~~g~~~~~~ 252 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRELVG--------NFPGMTFAPR 252 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEEEee--------cCCCcccCcE
Confidence 488999865544 4444 5589999999999 888887763 468999999887652111 1111223457
Q ss_pred EcCCCCEEEE-EecCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCCcEEEE
Q 000346 119 LTPLQPVVFF-GFHRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-D--GLIRAYNIHTYAVHYT 193 (1630)
Q Consensus 119 ~spdg~~LaS-gs~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-D--GtIrIWDl~t~~~i~t 193 (1630)
++|+|..++. .+.++ ..|.+||+.++ .. ..+..+........|+|||+.|+..+. + ..|.+||+.++.....
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSG--TT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCC--ce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 8899987654 34333 25778888766 33 345556666778999999998887763 3 3688889877665444
Q ss_pred EecCCceeecCcccEEEcCCCCEEEEEeCC---CeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECC
Q 000346 194 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 194 L~~~~~V~IsGi~sVafSPDg~~LaSgS~D---GtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D 267 (1630)
..+...+. ...|+|||++|+..+.+ ..|.+||+..+. ...+.. ...+....|+|||+.|+..+.+
T Consensus 330 t~~~~~~~-----~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~-~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 330 SFGGGRYS-----TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS-GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ecCCCccc-----CeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence 33344555 78999999999887643 367888986554 223322 3357789999999988776653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-09 Score=130.40 Aligned_cols=213 Identities=17% Similarity=0.170 Sum_probs=142.9
Q ss_pred CcEEEEEcCCCCEEEEEEC--C--eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEECCC--eEEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG--T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDC--TIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--G--tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS~DG--tIrVWDl~tge 95 (1630)
.+.+.+|+|||+.|+..+. + .|.+||+.+++........+...+++|+|+ |+.|+ +.+.++ .|++||+.+++
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpD-G~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPD-GRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCC-CCEEEEEEeCCCCceEEEEECCCCC
Confidence 5778999999999998875 2 399999998876543333355568899999 77665 555555 59999998776
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecC-C-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHR-R-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~D-g-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
... +.. .........++|++..++++++. + ..|.++|+.++ .... +..+.......+|+|||+.|+.
T Consensus 284 ~~~-lt~-------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g--~~~~-lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 284 LTR-LTN-------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG--SAER-LTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred eEE-Ccc-------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CeEE-eecCCCCccCEEECCCCCEEEE
Confidence 411 111 11112345788999888777653 2 14666676655 3222 2223344557899999999887
Q ss_pred EeCCC---eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCC---CeEEEEECCCCCceeEEEeeccCC
Q 000346 174 AYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~DG---tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D---GtVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.+.++ .|.+||+.++... .+....... ...|+|||++|+..+.+ +.|.++++..+. ...+..+..
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~-----~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~---~~~l~~~~g 423 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLTPGSLDE-----SPSFAPNGSMVLYATREGGRGVLAAVSTDGRV---RQRLVSADG 423 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECCCCCCCC-----CceECCCCCEEEEEEecCCceEEEEEECCCCc---eEEcccCCC
Confidence 66443 6999999887754 443333344 78999999988877653 357777886443 455555666
Q ss_pred CeEEEEEeC
Q 000346 248 PITSVAWLP 256 (1630)
Q Consensus 248 ~VssVsfSP 256 (1630)
.+...+|+|
T Consensus 424 ~~~~p~wsp 432 (433)
T PRK04922 424 EVREPAWSP 432 (433)
T ss_pred CCCCCccCC
Confidence 778888886
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-09 Score=124.56 Aligned_cols=241 Identities=9% Similarity=0.083 Sum_probs=178.0
Q ss_pred CCcEEEEEcCCCC--EEEEEEC-CeEEEEECCCCcEEEEE------c-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEEC
Q 000346 22 LQPHEAAFHPNQA--LIAVAIG-TYIIEFDTLTGSRIASI------D-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 22 ~rV~~LaFSPdG~--lLasgs~-GtI~VWDl~tg~~i~tl------~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl 91 (1630)
.+|.+++|.-+++ .+...+. +.+..+......+...+ . ...+|..++... .+|++|-.+|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEEec
Confidence 4889999987665 3444434 45777777766665553 2 237788887764 37888889999999998
Q ss_pred CCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEE-EEecC--CcEEEEEEcccCCccceeeecC---------CCCCe
Q 000346 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVF-FGFHR--RMSVTVVGTVEGGRAPTKIKTD---------LKKPI 159 (1630)
Q Consensus 92 ~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~La-Sgs~D--g~tI~IwDl~sg~~~~i~il~g---------H~~~I 159 (1630)
+.+... ......-....+...+-.++..+.++ +|+.. . .+.+||+... +.+..-.. -.-++
T Consensus 133 k~~d~h----ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n-~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 133 KSGDLH----SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENIN-ELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred cCCccc----cccceeeecCCceeeeccCCCCCceEecCchhccc-ceeeeecccc--eeeeeccCCCCccccceeeeee
Confidence 755321 11111112234556666666665544 47666 5 7899999866 22211111 13467
Q ss_pred EEEEEcCC--CCEEEEEeCCCeEEEEEcCCC-cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 160 VNLACHPR--LPVLYVAYADGLIRAYNIHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 160 tsLafSPd--g~lLaSgS~DGtIrIWDl~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
+++.|-+. ...|++++.-+.+|+||.+.+ +++..+.. ++.+. ++...|++++|++|..-+.+..+|++.++
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is-----~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS-----STGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce-----eeeecCCCcEEEEecccchhheecccCce
Confidence 88999987 789999999999999999865 56777776 88888 99999999999999999999999999887
Q ss_pred ceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 236 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 236 ~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
. ....+.+-.+.|+++..||.++++++++-|+.|||+|+.+.
T Consensus 281 l-~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 281 L-LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred e-eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 4 23347788899999999999999999999999999999763
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-11 Score=146.48 Aligned_cols=207 Identities=15% Similarity=0.208 Sum_probs=149.9
Q ss_pred EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCc
Q 000346 56 ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRM 134 (1630)
Q Consensus 56 ~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~ 134 (1630)
+.+.+| ..|+|+.|... |.++++|++|..++||..+++.|..... |+......++.+.....+++++.|.
T Consensus 184 krLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~r-------Ghs~ditdlavs~~n~~iaaaS~D~- 254 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCR-------GHSGDITDLAVSSNNTMIAAASNDK- 254 (1113)
T ss_pred HHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCC-------CCccccchhccchhhhhhhhcccCc-
Confidence 334466 88999999999 9999999999999999998887733322 3333445566666777889999999
Q ss_pred EEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--------------cEEEEEec-CC-
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY--------------AVHYTLQL-DN- 198 (1630)
Q Consensus 135 tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~--------------~~i~tL~~-~~- 198 (1630)
.|++|.+..+ .++..+.+|++.|++++|+|.. +.+.||++++||.+-. .....+.. ..
T Consensus 255 vIrvWrl~~~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 255 VIRVWRLPDG--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred eEEEEecCCC--chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 9999999999 8999999999999999999964 6789999999998710 11111110 00
Q ss_pred ceeecC----------cccEEEcCCCC-----------EEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 199 TIKLLG----------AGAFAFHPTLE-----------WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 199 ~V~IsG----------i~sVafSPDg~-----------~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
.-+..| +-.++|...+- +.+++-.+..+.+|++.++.. .+.+.+|...+..+.+||-
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCC
Confidence 000000 11223333322 333333466788999999874 7788899999999999995
Q ss_pred CC-EEEEEECCCceEEEEeeeec
Q 000346 258 LR-LLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 258 G~-lLaSgS~DGtIrIWDl~~~~ 279 (1630)
.. ...+++.||...|||+-...
T Consensus 407 n~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCC
Confidence 54 55688999999999987433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-09 Score=129.09 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=139.6
Q ss_pred CcEEEEEcCCCCEEEEEEC--C--eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEECCCeEEEEEC--CCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG--T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDCTIRSCDF--DTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--G--tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS~DGtIrVWDl--~tge 95 (1630)
.+.+.+|||||+.|+..+. + .|.+||+.+++........+.+.+.+|+|| |+.|+ +.+.++...+|.+ .++.
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD-G~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD-GRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCC-CCEEEEEEccCCCceEEEEECCCCC
Confidence 6789999999999998875 2 399999998876544334456778999999 77766 5667787666654 3332
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcc--cCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV--EGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~--sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
. ..+. ..........++|+|..+++.++......+|.+. .+ ..... ..+.......+|+|||++|+.
T Consensus 276 ~-~~lt-------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 276 L-RRLT-------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred c-EECC-------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCCCCcCceEECCCCCEEEE
Confidence 2 1111 1111123456899999887766532245555543 33 22222 222334456899999999987
Q ss_pred EeCCC---eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCC---eEEEEECCCCCceeEEEeeccCC
Q 000346 174 AYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~DG---tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DG---tVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.+.++ .|.+||+.++.... +....... .+.|+|||++|+.++.++ .+.+.+.. +.. ...+..+.+
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~-----~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~--~~~l~~~~g 415 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTDTTRDE-----SPSFAPNGRYILYATQQGGRSVLAAVSSD-GRI--KQRLSVQGG 415 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccCCCCcc-----CceECCCCCEEEEEEecCCCEEEEEEECC-CCc--eEEeecCCC
Confidence 77554 69999998887543 33322334 789999999988877544 34455664 442 445556667
Q ss_pred CeEEEEEeCC
Q 000346 248 PITSVAWLPM 257 (1630)
Q Consensus 248 ~VssVsfSPd 257 (1630)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 7888888874
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-10 Score=129.06 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=132.7
Q ss_pred CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCc
Q 000346 60 INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRM 134 (1630)
Q Consensus 60 ~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-----~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~ 134 (1630)
.+.+|..+.|..++.+.++||+.|..|++|.++.++. .+.+... ++.+....-.+.++++|..+++|++++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~---Ls~H~~aVN~vRf~p~gelLASg~D~g- 87 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSS---LSRHTRAVNVVRFSPDGELLASGGDGG- 87 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeec---ccCCcceeEEEEEcCCcCeeeecCCCc-
Confidence 3489999999988556999999999999999865432 2222110 112222335678899999999999999
Q ss_pred EEEEEEcc--------c------CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCc
Q 000346 135 SVTVVGTV--------E------GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNT 199 (1630)
Q Consensus 135 tI~IwDl~--------s------g~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~ 199 (1630)
.|.+|... + ......+.+.+|...|..++|+|++.++++++.|.++++||+..|.....+.. ...
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 99999876 2 11244566789999999999999999999999999999999999999999886 888
Q ss_pred eeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000346 200 IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1630)
Q Consensus 200 V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg 234 (1630)
+. .++|.|-++++++-+.|...+++.+...
T Consensus 168 vq-----gvawDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 168 VQ-----GVAWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred cc-----eeecchhhhhhhhhccCcccceeeeeee
Confidence 88 9999999999999998887777766543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=127.15 Aligned_cols=212 Identities=14% Similarity=0.051 Sum_probs=140.8
Q ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECC---CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEE
Q 000346 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~D---GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~ 119 (1630)
+|.+||...........+...+.+.+|+|+ ++.|+.++.+ ..|++||+.+++........ .......+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--------g~~~~~~~ 255 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRELVASFR--------GINGAPSF 255 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--------CCccCceE
Confidence 399999875544443345678999999999 8888887743 46999999887652211111 11234578
Q ss_pred cCCCCEEEE-EecCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEEcCCCcEEEEE
Q 000346 120 TPLQPVVFF-GFHRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGL--IRAYNIHTYAVHYTL 194 (1630)
Q Consensus 120 spdg~~LaS-gs~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-DGt--IrIWDl~t~~~i~tL 194 (1630)
+|++..++. .+.++ ..|.+||+.++ .. ..+..+.......+|+|||+.|+.++. +|. |.++|+.+++.....
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g--~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSR--QL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCC--Ce-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 888886654 33333 26899998876 33 334455555678899999998887763 444 667777776644332
Q ss_pred ecCCceeecCcccEEEcCCCCEEEEEeCCC---eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECC-C--
Q 000346 195 QLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-G-- 268 (1630)
Q Consensus 195 ~~~~~V~IsGi~sVafSPDg~~LaSgS~DG---tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D-G-- 268 (1630)
....... .++|+|||++|+..+.++ .|.+||+.+++. ..+. +........|+|||++|+..+.+ +
T Consensus 333 ~~g~~~~-----~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 333 FQGNYNA-----RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAPNGSMVLYATREGGRG 403 (433)
T ss_pred cCCCCcc-----CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECCCCCEEEEEEecCCce
Confidence 2233344 789999999998876443 689999988773 2333 23345678999999988877764 3
Q ss_pred ceEEEEe
Q 000346 269 SLQVWKT 275 (1630)
Q Consensus 269 tIrIWDl 275 (1630)
.|.+|++
T Consensus 404 ~L~~~~~ 410 (433)
T PRK04922 404 VLAAVST 410 (433)
T ss_pred EEEEEEC
Confidence 3555554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=130.36 Aligned_cols=205 Identities=13% Similarity=0.082 Sum_probs=144.8
Q ss_pred EEEEEECCeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCC
Q 000346 35 LIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDT 113 (1630)
Q Consensus 35 lLasgs~GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dg 113 (1630)
++++.++|.+.+.+-. ++..+.+..| +.|.+-.|+|+ |.-|+++++||.|++|.- +|-..-+ +.-....
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSr-sGMLRSt-------l~Q~~~~ 147 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWSR-SGMLRST-------VVQNEES 147 (737)
T ss_pred EEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEec-cchHHHH-------HhhcCce
Confidence 3444444888877744 6666677755 99999999999 999999999999999984 3322000 1111223
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 000346 114 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 193 (1630)
Q Consensus 114 tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~t 193 (1630)
..++.|.|+.+.++.+..+...|+- +... ..+.....|++-|.++.|++.++++++|+.|-..+|||-. |..+++
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKp--L~~n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKP--LAAN--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFT 222 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEee--cccc--cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccccc
Confidence 4566777777666666555533333 3333 3455667899999999999999999999999999999965 445544
Q ss_pred Ee-cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEE
Q 000346 194 LQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV 272 (1630)
Q Consensus 194 L~-~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrI 272 (1630)
-. ++.+|+ +++|.|+ +.++.++ -+++++ . ....+.|..++||+||.-+++|+..|.+.+
T Consensus 223 S~~~ey~IT-----Sva~npd-~~~~v~S-~nt~R~---~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 223 SAAEEYAIT-----SVAFNPE-KDYLLWS-YNTARF---S----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CChhcccee-----eeeeccc-cceeeee-eeeeee---c----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44 488998 9999999 5555555 233331 1 123467899999999999999999998755
Q ss_pred EE
Q 000346 273 WK 274 (1630)
Q Consensus 273 WD 274 (1630)
=.
T Consensus 283 A~ 284 (737)
T KOG1524|consen 283 AY 284 (737)
T ss_pred ee
Confidence 43
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-08 Score=119.68 Aligned_cols=250 Identities=16% Similarity=0.151 Sum_probs=153.4
Q ss_pred EEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEE-CCCeEEEEECCCCcEEEEEcC
Q 000346 25 HEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFDTEQSFVLHSP 102 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS-~DGtIrVWDl~tge~~v~fsp 102 (1630)
..+.|+|||+++++++. |.|.++|+.+++.+.++.......++++++| |++++++. .++.+.++|.++.+..-...-
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D-G~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD-GKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T-TTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC-CCEEEEEecCCCceeEeccccccceeeccc
Confidence 34789999999999987 7899999999999999997777899999999 88777665 789999999998876222211
Q ss_pred CCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEE-eCCCeEE
Q 000346 103 EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADGLIR 181 (1630)
Q Consensus 103 dg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSg-S~DGtIr 181 (1630)
.+............+..++..+.++..-.+...|.+.|..... .................|+|++++++++ ..+..|-
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-ccceeeecccccccccccCcccceeeecccccceeE
Confidence 0000000111234566677777555544443378888876652 2222233345677889999999987665 4667888
Q ss_pred EEEcCCCcEEEEEe--------------c--CCceee---------------------------------cC-cccEEEc
Q 000346 182 AYNIHTYAVHYTLQ--------------L--DNTIKL---------------------------------LG-AGAFAFH 211 (1630)
Q Consensus 182 IWDl~t~~~i~tL~--------------~--~~~V~I---------------------------------sG-i~sVafS 211 (1630)
++|..+++.+..+. | .+.++- .| ...+..|
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~th 277 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTH 277 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecC
Confidence 88888765554432 1 001110 01 2356779
Q ss_pred CCCCEEEEE----eCCCeEEEEECCCCCceeEEEeeccC-CCeEEEEEeCCCCEEEEEECCC--ceEEEEeeee
Q 000346 212 PTLEWLFVG----DRRGTLLAWDVSIERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDG--SLQVWKTRVI 278 (1630)
Q Consensus 212 PDg~~LaSg----S~DGtVrVWDl~tgk~~lv~tL~gH~-~~VssVsfSPdG~lLaSgS~DG--tIrIWDl~~~ 278 (1630)
|+++++++. ...++|.++|.++.+ .+.++.... ..+..+.|+++|+.+..+..++ .|.|||..+.
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 999999998 456899999999876 355554322 3589999999999776555444 6999997643
|
... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-08 Score=113.84 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=155.7
Q ss_pred CCcEEEEEcCC-CCEEEEEECCeEEEEECCCC----c--------EEEEEc--CCCCEEEEEEeCCCCCEEEEEE-CCCe
Q 000346 22 LQPHEAAFHPN-QALIAVAIGTYIIEFDTLTG----S--------RIASID--INSPVVRMAYSPTSGHAVVAIL-EDCT 85 (1630)
Q Consensus 22 ~rV~~LaFSPd-G~lLasgs~GtI~VWDl~tg----~--------~i~tl~--~~~~VtsVafSpd~g~lLaSgS-~DGt 85 (1630)
..|+|++|-|. +.-|++|+.+.|.+|..... + ..+.++ +|.+|+++.|.+| |..+++++ .|..
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~gsss 219 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASFGSSS 219 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCC-CCEEeecccCcce
Confidence 37999999995 45788888899999987521 1 222333 5689999999999 88888887 6789
Q ss_pred EEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEc
Q 000346 86 IRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165 (1630)
Q Consensus 86 IrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafS 165 (1630)
|+|||.+++.+.-.. +. +..+..-+-++|++.+++.+.-|+ ..++|+....+ .+.+-..+ .+.|....|+
T Consensus 220 i~iWdpdtg~~~pL~-~~------glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~w-t~erw~lg-sgrvqtacWs 289 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLI-PK------GLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQSW-TKERWILG-SGRVQTACWS 289 (445)
T ss_pred EEEEcCCCCCccccc-cc------CCCceeeEEEcCCCCEEEEecccc-eeeeehhcccc-eecceecc-CCceeeeeec
Confidence 999999998762111 11 123445678999999999999999 99999765553 33222222 4589999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC-c-----------EEEEEecCCceee--------cCcccEEEcCCCCEEEEEeCCC-
Q 000346 166 PRLPVLYVAYADGLIRAYNIHTY-A-----------VHYTLQLDNTIKL--------LGAGAFAFHPTLEWLFVGDRRG- 224 (1630)
Q Consensus 166 Pdg~lLaSgS~DGtIrIWDl~t~-~-----------~i~tL~~~~~V~I--------sGi~sVafSPDg~~LaSgS~DG- 224 (1630)
|+|+.|+.++. |.-++|.+.-. + .+..+..-..+.+ .++.+++|+|.|.+|++.-..+
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 99997655442 33344543311 0 0000000000000 1245999999999999876533
Q ss_pred -------eEEEEECCCCCceeEEEeecc--CCCeEEEEEeC---CCCEEEEEECCCceEEEEee
Q 000346 225 -------TLLAWDVSIERPSMIGIIQVG--SQPITSVAWLP---MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 225 -------tVrVWDl~tgk~~lv~tL~gH--~~~VssVsfSP---dG~lLaSgS~DGtIrIWDl~ 276 (1630)
.|.+||.+..-. +...+.+. ...-..++|+| +|.+|..+=..|.+.-|++.
T Consensus 369 ~v~~~k~~i~~fdtr~sp~-vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKSPP-VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhhcccccCc-eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 366777775432 11111111 12245677776 67788777778888877765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-06 Score=111.28 Aligned_cols=242 Identities=15% Similarity=0.108 Sum_probs=163.9
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEE----ECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCC---
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEF----DTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT--- 93 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VW----Dl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t--- 93 (1630)
.+|.++.|-++..-++.+.. |.|.+. +..+...-..=.....|.+++|||| +..|+..+.+++|.+.+-+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEE
Confidence 48999999999888877777 778777 4443332221124588999999999 99999998888887754210
Q ss_pred ----------CcE---EEEEcCC-----C---C----------------e-EEeecCCeEEEEEcCCCCEEEEEec----
Q 000346 94 ----------EQS---FVLHSPE-----K---K----------------M-ESISVDTEVHLALTPLQPVVFFGFH---- 131 (1630)
Q Consensus 94 ----------ge~---~v~fspd-----g---~----------------~-asgs~Dgtv~L~~spdg~~LaSgs~---- 131 (1630)
|+. .+.|-.. | + . ++ ..|+.+++.|-.||.++++.+-
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCC
Confidence 100 2222211 0 0 1 22 5567799999999999887664
Q ss_pred --CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCcEEEEEec-----CCcee
Q 000346 132 --RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA---DGLIRAYNIHTYAVHYTLQL-----DNTIK 201 (1630)
Q Consensus 132 --Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~---DGtIrIWDl~t~~~i~tL~~-----~~~V~ 201 (1630)
.+ .+++|+-. | ....+-..-.+--.+++|.|.|++||+... ...|.+|. ++|-....|.. ...|.
T Consensus 234 ~~~R-~iRVy~Re-G--~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 234 GSRR-VIRVYSRE-G--ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred Ccee-EEEEECCC-c--eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence 35 89999965 4 222222222233356899999999998874 34577776 45544444442 45666
Q ss_pred ecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccC-CCeEEEEEeCCC-CEEEEEECCCceEEEEee
Q 000346 202 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS-QPITSVAWLPML-RLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 202 IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~-~~VssVsfSPdG-~lLaSgS~DGtIrIWDl~ 276 (1630)
.+.|++|+..|+....|. |.+|-..+....+.+.+.-.. ..+..+.|||.. ..|...+.+|.+..++..
T Consensus 309 -----~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 309 -----ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred -----EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 999999999999977555 999999998875666665332 345569999954 457777777888777665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=125.07 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=141.4
Q ss_pred CcEEEEEcCCCCEEEEEEC----CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEECCCe--EEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG----TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDCT--IRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~----GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS~DGt--IrVWDl~tge 95 (1630)
.+.+.+|+|||+.|+..+. ..|.+||+.+++........+.+.+.+|+|+ |+.|+ +.+.++. |++||+.+++
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD-G~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD-GRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC-CCEEEEEEecCCCceEEEEECCCCc
Confidence 6889999999999988765 2499999998876543334467889999999 77654 5555554 7777887765
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC--cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg--~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
... +. ..........++|++..+++.++.. ..|.+||...+ ... .+..+...+....|+|||+.|+.
T Consensus 282 ~~~-Lt-------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--~~~-~lt~~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 282 TTR-LT-------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS--NPR-RISFGGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred eEE-cc-------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--CeE-EeecCCCcccCeEECCCCCEEEE
Confidence 411 11 1111123457788988877766432 26788887655 332 33333555677899999999887
Q ss_pred EeCC---CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCC------CeEEEEECCCCCceeEEEeec
Q 000346 174 AYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR------GTLLAWDVSIERPSMIGIIQV 244 (1630)
Q Consensus 174 gS~D---GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D------GtVrVWDl~tgk~~lv~tL~g 244 (1630)
.+.+ ..|.+||+.++. ...+.....+. .+.|+|||++|+..+.+ ..+.++|+..+. ...+.
T Consensus 351 ~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~-----~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~---~~~l~- 420 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSG-ERILTSGFLVE-----GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN---EREVP- 420 (435)
T ss_pred EEcCCCceEEEEEECCCCc-eEeccCCCCCC-----CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc---eEEcc-
Confidence 7643 368888876554 34444333455 88999999998776542 257777887655 33343
Q ss_pred cCCCeEEEEEeCC
Q 000346 245 GSQPITSVAWLPM 257 (1630)
Q Consensus 245 H~~~VssVsfSPd 257 (1630)
....+...+|+|-
T Consensus 421 ~~~~~~~p~Wsp~ 433 (435)
T PRK05137 421 TPGDASDPAWSPL 433 (435)
T ss_pred CCCCccCcccCCC
Confidence 2345677788763
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-08 Score=109.35 Aligned_cols=225 Identities=12% Similarity=0.094 Sum_probs=161.9
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcE------EEEEc---C----C-CCEEEEEEeCCCCCEEEEEECCCeEEE
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSR------IASID---I----N-SPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~------i~tl~---~----~-~~VtsVafSpd~g~lLaSgS~DGtIrV 88 (1630)
.|+.++|+ ..+|++|++|.|+=|.+..... +.... + . -.|+++...|. .+.++.++.|+.++-
T Consensus 64 piy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 64 PIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQ 140 (325)
T ss_pred Ceeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC-CCcEEEecCCeEEEE
Confidence 68899998 5688899999999998763321 11111 1 1 35899999998 555666668999999
Q ss_pred EECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecC---------C-CCC
Q 000346 89 CDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD---------L-KKP 158 (1630)
Q Consensus 89 WDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g---------H-~~~ 158 (1630)
||+++|+....+. ++.|+..++..-.....+++|+.|+ ++++||.+++ ++++++.. | ..+
T Consensus 141 ~dlE~G~i~r~~r-------GHtDYvH~vv~R~~~~qilsG~EDG-tvRvWd~kt~--k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 141 VDLEDGRIQREYR-------GHTDYVHSVVGRNANGQILSGAEDG-TVRVWDTKTQ--KHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred EEecCCEEEEEEc-------CCcceeeeeeecccCcceeecCCCc-cEEEEecccc--ceeEEeccccChhhcCcccCce
Confidence 9999998877777 7778877777756667899999999 9999999998 67666522 1 456
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCcee
Q 000346 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1630)
Q Consensus 159 ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~l 238 (1630)
|.+++.+ ..++++|+ ...+.+|.+++.++..++.-...+. .+.|..| .+++++..+.|.-|.+. +..
T Consensus 211 igala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~-----~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl-- 277 (325)
T KOG0649|consen 211 IGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVH-----LVDFVDD--CVLIGGEGNHVQSYTLN-GVL-- 277 (325)
T ss_pred eEEEecc--CceEEecC-CCceeEEeccCCCceEEEeccccee-----Eeeeecc--eEEEeccccceeeeeec-cEE--
Confidence 7888775 44777664 5689999999999999998878887 8888755 67778878889989877 331
Q ss_pred EEEeeccCCCeEEEEEeCCC-CEEEEEECCCceEEE
Q 000346 239 IGIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVW 273 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG-~lLaSgS~DGtIrIW 273 (1630)
-...........+.+|+..- ++|-.++....+.|+
T Consensus 278 ~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 278 QANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 22233333455666665443 344445555555554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-07 Score=112.53 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=165.3
Q ss_pred CcEEEEEcCCCCEEEEEEC-----CeEEEEECCCC--cE--EEEEc-CCCCEEEEEEeCCCCCEEEEEE-CCCeEEEEEC
Q 000346 23 QPHEAAFHPNQALIAVAIG-----TYIIEFDTLTG--SR--IASID-INSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDF 91 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-----GtI~VWDl~tg--~~--i~tl~-~~~~VtsVafSpd~g~lLaSgS-~DGtIrVWDl 91 (1630)
.+..++++|++++|.+... +.|..|.+... +. +.... .......++++|+ +.+|+++. .+|+|.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~-g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD-GRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT-SSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC-CCEEEEEEccCCeEEEEEc
Confidence 6788999999999999977 25888887754 33 33333 3356678999999 88777776 6899999999
Q ss_pred CC-CcEEE---EEcCCCCe-E--EeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccc--eeee-cCCCCCeEE
Q 000346 92 DT-EQSFV---LHSPEKKM-E--SISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP--TKIK-TDLKKPIVN 161 (1630)
Q Consensus 92 ~t-ge~~v---~fspdg~~-a--sgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~--i~il-~gH~~~Its 161 (1630)
.. +.... .+...+.- . .....+...+.++|+++++++.......|.+|++....... ...+ ......-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 33311 11110000 0 00012335678899999988877665589999987653111 1112 233456789
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEEcC--CCc--EEEEEec-CCceee-cCcccEEEcCCCCEEEEEeC-CCeEEEEECC-
Q 000346 162 LACHPRLPVLYVAY-ADGLIRAYNIH--TYA--VHYTLQL-DNTIKL-LGAGAFAFHPTLEWLFVGDR-RGTLLAWDVS- 232 (1630)
Q Consensus 162 LafSPdg~lLaSgS-~DGtIrIWDl~--t~~--~i~tL~~-~~~V~I-sGi~sVafSPDg~~LaSgS~-DGtVrVWDl~- 232 (1630)
++|+|+++++++.+ .+++|.++++. ++. .+.++.. ...... .....++++|||++|+++.+ +++|.+|++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999999877665 67889999988 442 3333332 111100 01237999999999988774 6789999984
Q ss_pred -CCCceeEEEeeccCCCeEEEEEeCCCCEEEEEE-CCCceEEEEee
Q 000346 233 -IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC-RDGSLQVWKTR 276 (1630)
Q Consensus 233 -tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS-~DGtIrIWDl~ 276 (1630)
+++...+..+.......+.+.++|+|++|+++. .++.|.+|+++
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 355444556655556689999999999998877 56689999886
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=116.74 Aligned_cols=239 Identities=15% Similarity=0.153 Sum_probs=161.1
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-Ce-EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCe-------------
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TY-IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCT------------- 85 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-Gt-I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGt------------- 85 (1630)
+..+.+++|||||+.++..+. +. |.||.+.|.+....-.....+..++|+|+ |++.+.++.-..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~d-g~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPD-GQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCC-CceeeeeecccHHHHHHHHhhHHHH
Confidence 347899999999988888887 44 99999998776543323366788899998 888777653211
Q ss_pred -EEEEECCCCcE-EEEEcCCCCeEEee-------------cCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccC------
Q 000346 86 -IRSCDFDTEQS-FVLHSPEKKMESIS-------------VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG------ 144 (1630)
Q Consensus 86 -IrVWDl~tge~-~v~fspdg~~asgs-------------~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg------ 144 (1630)
++-++++|-.. .+.|+|+|..+..- .-|...+.++|.++.++.|+.|+ .+++.+-.+-
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~-~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQ-MLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccch-hhhhhceeeeeehhhh
Confidence 11122332222 56677777651111 11234556677777777777776 5554332110
Q ss_pred -C----cc-------------------c----------------------------e------eeecCCCCCeEEEEEcC
Q 000346 145 -G----RA-------------------P----------------------------T------KIKTDLKKPIVNLACHP 166 (1630)
Q Consensus 145 -~----~~-------------------~----------------------------i------~il~gH~~~ItsLafSP 166 (1630)
+ +. | + ..+....-.+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00 0 0 00011133466799999
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec
Q 000346 167 RLPVLYVAYA--DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 244 (1630)
Q Consensus 167 dg~lLaSgS~--DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g 244 (1630)
|..++++-.+ -+.+.+||++..+....+.....|. ...|+|....|+.+.....+++|...-.. ++.. .+
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir-----af~WdP~~prL~vctg~srLY~W~psg~~--~V~v-P~ 400 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR-----AFEWDPGRPRLVVCTGKSRLYFWAPSGPR--VVGV-PK 400 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhcccee-----EEEeCCCCceEEEEcCCceEEEEcCCCce--EEec-CC
Confidence 9999888753 3579999999888777776678888 99999999999999888889999887533 3433 33
Q ss_pred cCCCeEEEEEeCCCCEEEEEECCCc
Q 000346 245 GSQPITSVAWLPMLRLLVTLCRDGS 269 (1630)
Q Consensus 245 H~~~VssVsfSPdG~lLaSgS~DGt 269 (1630)
..-+|..+.|+-+|..++-.+.|..
T Consensus 401 ~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceeeeEEecCCCcEEEEEcCCce
Confidence 4578999999999999999998863
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=127.90 Aligned_cols=199 Identities=10% Similarity=0.101 Sum_probs=138.4
Q ss_pred CcEEEEEcCCCCEEEEEECCe-EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----
Q 000346 23 QPHEAAFHPNQALIAVAIGTY-IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~Gt-I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----- 96 (1630)
.|.|++|+.||+++++|+.+. |.+|+-. -+-+-.+.|...|.|+.|+|- .+.|++++- ...-+|..+....
T Consensus 55 tVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~-~h~LasCsL-sdFglWS~~qK~V~K~ks 131 (1081)
T KOG1538|consen 55 TVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPI-THQLASCSL-SDFGLWSPEQKSVSKHKS 131 (1081)
T ss_pred eEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCch-HHHhhhcch-hhccccChhhhhHHhhhh
Confidence 799999999999999999955 9999865 222334446688888888887 778888764 2355676543321
Q ss_pred -----EEEEcCCCCe-EEeecCCeEEEEE------------------------cCCC-----CEEEEEecCCcEEEEEEc
Q 000346 97 -----FVLHSPEKKM-ESISVDTEVHLAL------------------------TPLQ-----PVVFFGFHRRMSVTVVGT 141 (1630)
Q Consensus 97 -----~v~fspdg~~-asgs~Dgtv~L~~------------------------spdg-----~~LaSgs~Dg~tI~IwDl 141 (1630)
+.+|..||.+ +.|..+|++++-. +|.. ..++...... ++.++.+
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-TLSFy~L 210 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-TLSFYQL 210 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc-eeEEEEe
Confidence 6778888888 7777777755442 2221 1222222222 2222222
Q ss_pred ccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEE
Q 000346 142 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVG 220 (1630)
Q Consensus 142 ~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSg 220 (1630)
. | +.+..-....-...|+.+-++|.++..|+.|+.+++|. +.|-.+-++.. +.+|+ +++.+|++++++.|
T Consensus 211 s-G--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIW-----tV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 211 S-G--KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIW-----TVQAKPNSQYVVVG 281 (1081)
T ss_pred c-c--eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEE-----EEEEccCCceEEEE
Confidence 1 1 11111122233456889999999999999999999995 66777777766 89999 99999999999999
Q ss_pred eCCCeEEEEECCCC
Q 000346 221 DRRGTLLAWDVSIE 234 (1630)
Q Consensus 221 S~DGtVrVWDl~tg 234 (1630)
+.||+|..|++-..
T Consensus 282 CqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 282 CQDGTIACYNLIFS 295 (1081)
T ss_pred EccCeeehhhhHHh
Confidence 99999999987644
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=129.75 Aligned_cols=247 Identities=17% Similarity=0.203 Sum_probs=175.4
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CC-CCEEEEEEeCCC-CCEEEEEECCCeEEEEECCC-Cc
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-IN-SPVVRMAYSPTS-GHAVVAILEDCTIRSCDFDT-EQ 95 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~-~~VtsVafSpd~-g~lLaSgS~DGtIrVWDl~t-ge 95 (1630)
+.-|..|.|+..|.+|++|++ -.|.+||+..+.....+. +| ..|..-.|.|.. ...+++++.||.|++=.+.. +.
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~ 221 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY 221 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc
Confidence 447899999999999999999 459999999998888887 55 777777787752 36788888899888766532 21
Q ss_pred E--------------EEEEcCCCCe--EEeecCCe----------------------------EEEEEcCCCC-EEEEEe
Q 000346 96 S--------------FVLHSPEKKM--ESISVDTE----------------------------VHLALTPLQP-VVFFGF 130 (1630)
Q Consensus 96 ~--------------~v~fspdg~~--asgs~Dgt----------------------------v~L~~spdg~-~LaSgs 130 (1630)
+ .++..|+... .+++.|+. ..+..+|... .+++++
T Consensus 222 ~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG 301 (559)
T KOG1334|consen 222 VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG 301 (559)
T ss_pred eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC
Confidence 1 2233333332 33333332 2344455554 677788
Q ss_pred cCCcEEEEEEcccCCcc----ceeee------cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--C----------
Q 000346 131 HRRMSVTVVGTVEGGRA----PTKIK------TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHT--Y---------- 188 (1630)
Q Consensus 131 ~Dg~tI~IwDl~sg~~~----~i~il------~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t--~---------- 188 (1630)
.|. .+++||.+.-+.. .+..+ ....-.|++++|+.++.-|.++..|-.|+++.-.. +
T Consensus 302 ~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~ 380 (559)
T KOG1334|consen 302 SDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE 380 (559)
T ss_pred hhh-hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence 888 8899998654311 11122 12245689999998888888888899999995331 1
Q ss_pred cEE-EEEec---CCceeecCcccEE-EcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEE
Q 000346 189 AVH-YTLQL---DNTIKLLGAGAFA-FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 189 ~~i-~tL~~---~~~V~IsGi~sVa-fSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaS 263 (1630)
..+ +.+++ ...|. .+- |-|...|+++|++-|.|.||+-.+++. +..+.+...-|+|+.-||--.+||+
T Consensus 381 ~~~k~vYKGHrN~~TVK-----gVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei--i~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVK-----GVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI--IRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred hccchhhcccccccccc-----eeeeccCccceEEecCccceEEEEecchhHH--HHHhhcccceEeccCCCCCCchhhc
Confidence 111 11333 33454 554 567889999999999999999998884 6677776678999999999999999
Q ss_pred EECCCceEEEEe
Q 000346 264 LCRDGSLQVWKT 275 (1630)
Q Consensus 264 gS~DGtIrIWDl 275 (1630)
++-|..|+||-.
T Consensus 454 SGid~DVKIWTP 465 (559)
T KOG1334|consen 454 SGIDHDVKIWTP 465 (559)
T ss_pred cCCccceeeecC
Confidence 999999999964
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-07 Score=113.95 Aligned_cols=237 Identities=14% Similarity=0.262 Sum_probs=156.6
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEE-----ECC-----CeEEEEECC
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI-----LED-----CTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSg-----S~D-----GtIrVWDl~ 92 (1630)
.++..++|++|++++.+..+.++|++..++..+.+.... .++++.|+|- +++|.+- ..| -.+.+|+++
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~-g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPK-GNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeeccc-ccccccccccccccCCCCCCCceeeeeec
Confidence 367889999999999999999999999988765555544 8999999998 8877652 122 346789888
Q ss_pred CCcE------------EEEEcCCCCe------------------------------------------EEe------ecC
Q 000346 93 TEQS------------FVLHSPEKKM------------------------------------------ESI------SVD 112 (1630)
Q Consensus 93 tge~------------~v~fspdg~~------------------------------------------asg------s~D 112 (1630)
++.. +..|+.|..+ ++. +.-
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 7432 1222222111 000 000
Q ss_pred Ce-------------------------EEEEEcCCCC-EEEEEe-----------cCCcEEEEEEcccCCccceeeecCC
Q 000346 113 TE-------------------------VHLALTPLQP-VVFFGF-----------HRRMSVTVVGTVEGGRAPTKIKTDL 155 (1630)
Q Consensus 113 gt-------------------------v~L~~spdg~-~LaSgs-----------~Dg~tI~IwDl~sg~~~~i~il~gH 155 (1630)
.. +.+.|.+.+. +|+..+ ... +++++++. ++ .+...+. -
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq-~Lyll~t~-g~-s~~V~L~-k 269 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQ-TLYLLATQ-GE-SVSVPLL-K 269 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccc-eEEEEEec-Cc-eEEEecC-C
Confidence 00 2222222232 111111 112 45555554 22 3332222 2
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC---CCeEEEEE
Q 000346 156 KKPIVNLACHPRLPVLYVAY--ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWD 230 (1630)
Q Consensus 156 ~~~ItsLafSPdg~lLaSgS--~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~---DGtVrVWD 230 (1630)
.++|.++.|+|+++.|+++. .-.++.|||++ +.+++.+. +++-+ ++-|+|.|++|+.++- .|.+-|||
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN-----~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRN-----TAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCcc-----ceEECCCCCEEEEeecCCCCCceEEEe
Confidence 78999999999998877654 66789999987 45555543 55566 8899999999998875 57899999
Q ss_pred CCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEEC------CCceEEEEee
Q 000346 231 VSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR------DGSLQVWKTR 276 (1630)
Q Consensus 231 l~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~------DGtIrIWDl~ 276 (1630)
+.+.++ +..+.. ..-+-+.|+|||++|+|++. |+.++||+..
T Consensus 343 v~n~K~--i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 343 VPNRKL--IAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ccchhh--cccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999764 655554 34466899999999998874 6789999986
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=117.55 Aligned_cols=210 Identities=11% Similarity=0.097 Sum_probs=155.0
Q ss_pred EEEEEEC-CeEEEEECCCCc----EEEEEcCCCCEEEEEEeCCCCCEEEEEECC--CeEEEEECCCCcEEEEEcCCCCeE
Q 000346 35 LIAVAIG-TYIIEFDTLTGS----RIASIDINSPVVRMAYSPTSGHAVVAILED--CTIRSCDFDTEQSFVLHSPEKKME 107 (1630)
Q Consensus 35 lLasgs~-GtI~VWDl~tg~----~i~tl~~~~~VtsVafSpd~g~lLaSgS~D--GtIrVWDl~tge~~v~fspdg~~a 107 (1630)
+|++|.. |.+.+|....+. .+..+..+..+..|.-++.....+++|+.. ..+.+||++..+. .|+...-.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--iw~aKNvp- 193 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--IWSAKNVP- 193 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee--eeeccCCC-
Confidence 4555555 889999988443 334444557788888888756677779988 8899999987743 23321100
Q ss_pred EeecCCeEEEEE-----cCC--CCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000346 108 SISVDTEVHLAL-----TPL--QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 108 sgs~Dgtv~L~~-----spd--g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtI 180 (1630)
--..+-.+-+|+ .+. ...+++++.-+ .+++||++.+. .++..+.-...+|+++...|+++.+++|..-+.+
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-qvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-QVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecce-eEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 000111133343 333 56888999999 99999999775 8888888788999999999999999999999999
Q ss_pred EEEEcCCCcEEEE-Eec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC
Q 000346 181 RAYNIHTYAVHYT-LQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257 (1630)
Q Consensus 181 rIWDl~t~~~i~t-L~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd 257 (1630)
..||++.++.... +.+ .+.++ ++..||.++++++|+-|+.|||+|+.+.+. +...-. .+.++++.+.++
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsir-----sih~hp~~~~las~GLDRyvRIhD~ktrkl--l~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIR-----SIHCHPTHPVLASCGLDRYVRIHDIKTRKL--LHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred heecccCceeeccccCCccCCcc-----eEEEcCCCceEEeeccceeEEEeecccchh--hhhhhh-hccccEEEecCC
Confidence 9999999988766 666 88888 999999999999999999999999998653 211111 234566666543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-07 Score=105.12 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=149.4
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCC---CCEEEEEEeCCCCCEEEE-EECC------CeEEEEECC
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN---SPVVRMAYSPTSGHAVVA-ILED------CTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~---~~VtsVafSpd~g~lLaS-gS~D------GtIrVWDl~ 92 (1630)
...+++|+.|..-+++|.+...+||+.+.-+.....+.+ -.+..|-|- .++|+. |+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence 566799999999999999988999998864432222211 223334443 234443 3332 479999944
Q ss_pred CCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCC--CCCeEEEEEcCCCCE
Q 000346 93 TEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL--KKPIVNLACHPRLPV 170 (1630)
Q Consensus 93 tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH--~~~ItsLafSPdg~l 170 (1630)
..++...++-.+.. ..+...++ .|+..- .. .|.+|.....- +.+..+... ...+.+++-+.+..+
T Consensus 84 k~~~i~el~f~~~I--------~~V~l~r~--riVvvl-~~-~I~VytF~~n~-k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 84 KERCIIELSFNSEI--------KAVKLRRD--RIVVVL-EN-KIYVYTFPDNP-KLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred cCcEEEEEEeccce--------eeEEEcCC--eEEEEe-cC-eEEEEEcCCCh-hheeeeecccCCCceEeecCCCCceE
Confidence 44443333322222 11222221 111111 12 56777766432 223222211 223444333334445
Q ss_pred EEEE-eCCCeEEEEEcCCCcE---EEEEecCCceeecCcccEEEcCCCCEEEEEeCCCe-EEEEECCCCCceeEEEeecc
Q 000346 171 LYVA-YADGLIRAYNIHTYAV---HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT-LLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 171 LaSg-S~DGtIrIWDl~t~~~---i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGt-VrVWDl~tgk~~lv~tL~gH 245 (1630)
||.- -.-|.|+|.|+...+. ...-.|+..|. +++.+-+|..+||+|..|+ |||||..+++. +..++-.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Ia-----cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~--l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIA-----CVALNLQGTLVATASTKGTLIRIFDTEDGTL--LQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCcee-----EEEEcCCccEEEEeccCcEEEEEEEcCCCcE--eeeeecC
Confidence 5543 3669999999886655 33333588898 9999999999999999887 79999999985 6666543
Q ss_pred C--CCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 246 S--QPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 246 ~--~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
. ..|.+++|+|++.+|+++|+-|+|+||.++...+
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 3 6799999999999999999999999999985443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-07 Score=115.25 Aligned_cols=208 Identities=13% Similarity=0.037 Sum_probs=139.2
Q ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECC---CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEE
Q 000346 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~D---GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~ 119 (1630)
.|.++|...+.......+...+.+.+|+|+ |++|+.++.+ ..|++||+.+++........ .......+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--------~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREKVASFP--------GMNGAPAF 241 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--------CCccceEE
Confidence 388888875554444445577999999999 8888887644 47999999887542211111 11233567
Q ss_pred cCCCCEEEEE-ecCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCcEEEEE
Q 000346 120 TPLQPVVFFG-FHRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-G--LIRAYNIHTYAVHYTL 194 (1630)
Q Consensus 120 spdg~~LaSg-s~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D-G--tIrIWDl~t~~~i~tL 194 (1630)
+|++..++.. +.++ ..|.+||+.++ . ...+..+........|+||++.|+.++.. + .|.+||+.+++.....
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGK--Q-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCC--C-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 8888866643 3222 26888888766 2 23334455555678999999988766643 3 6888888877654333
Q ss_pred ecCCceeecCcccEEEcCCCCEEEEEeCCC---eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceE
Q 000346 195 QLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 271 (1630)
Q Consensus 195 ~~~~~V~IsGi~sVafSPDg~~LaSgS~DG---tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIr 271 (1630)
.....+. .+.|+|+|++|+.++.++ .|.+||+.++.. ..+..+ .......|+|+|++|+..+.++...
T Consensus 319 ~~~~~~~-----~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 319 FRGGYNA-----SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTDT-GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred cCCCCcc-----CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccCC-CCCCCceECCCCCEEEEEEeCCCcE
Confidence 2344455 889999999999988765 788999988653 333322 2345678999999888887766433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-08 Score=118.41 Aligned_cols=279 Identities=12% Similarity=0.130 Sum_probs=174.5
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEc-C-CC-CEEEEEEeCCCCCEEEEEECCCe------------
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASID-I-NS-PVVRMAYSPTSGHAVVAILEDCT------------ 85 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~-~-~~-~VtsVafSpd~g~lLaSgS~DGt------------ 85 (1630)
..+.|..+|||+++++.+. -.|++||+.+-.. .++ | .. .|.-.-.+.| -..++.-..|.+
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD-~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDD-YSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccc-hhhheEeecCceeeehhhcCeeee
Confidence 5678999999998766555 5699999874432 122 1 12 2222222222 222222233333
Q ss_pred ---------------------------EEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEE
Q 000346 86 ---------------------------IRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTV 138 (1630)
Q Consensus 86 ---------------------------IrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~I 138 (1630)
|+-++++.|+..--|. ........+..++...+|++|+.++ .|.+
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-------~~~~~lN~v~in~~hgLla~Gt~~g-~VEf 201 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-------TDSGELNVVSINEEHGLLACGTEDG-VVEF 201 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-------cccccceeeeecCccceEEecccCc-eEEE
Confidence 4444444443211111 1112334556677778899999999 9999
Q ss_pred EEcccCCccceeee------cCCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCc
Q 000346 139 VGTVEGGRAPTKIK------TDLKK-----PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGA 205 (1630)
Q Consensus 139 wDl~sg~~~~i~il------~gH~~-----~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi 205 (1630)
||.+... .+.++ ..|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-.| .-+|.
T Consensus 202 wDpR~ks--rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~---- 275 (703)
T KOG2321|consen 202 WDPRDKS--RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK---- 275 (703)
T ss_pred ecchhhh--hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee----
Confidence 9998773 22222 22333 499999999999999999999999999999998888777 66777
Q ss_pred ccEEEcCC--CCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCCC
Q 000346 206 GAFAFHPT--LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNR 283 (1630)
Q Consensus 206 ~sVafSPD--g~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk 283 (1630)
.+.|.+. ++.+++. +...++|||-.++++ ...+.. +..++.+++-|++.+++++-+++.+..|=+...-+
T Consensus 276 -~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~--~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP--- 347 (703)
T KOG2321|consen 276 -KLDWQDTDQQNKVVSM-DKRILKIWDECTGKP--MASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP--- 347 (703)
T ss_pred -eecccccCCCceEEec-chHHhhhcccccCCc--eeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCC---
Confidence 8899774 3445544 578899999999986 444443 56699999999999999999988876664432111
Q ss_pred CCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCceeE
Q 000346 284 PPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVL 333 (1630)
Q Consensus 284 ~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Al 333 (1630)
.|....|.. +++..+.......+|..-+|.+-.---+++|.-+
T Consensus 348 aPrWCSfLd-------nlTEElEE~~~~TVYDnYkFvTkkdL~~LgLthL 390 (703)
T KOG2321|consen 348 APRWCSFLD-------NLTEELEENPETTVYDNYKFVTKKDLEKLGLTHL 390 (703)
T ss_pred CchhhhHHH-------hHHHHHhcCCccccccceeeeeHHHHHhcCCcce
Confidence 122222221 2334444444556666655543333334444443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=129.54 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=152.6
Q ss_pred EECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc-------EEEEEcCCCCeEEeecCCeEEEE
Q 000346 47 FDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-------SFVLHSPEKKMESISVDTEVHLA 118 (1630)
Q Consensus 47 WDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge-------~~v~fspdg~~asgs~Dgtv~L~ 118 (1630)
|+.+ |..+..+. |...|..++.++..+.++++||+||+|++||...-. +..+|++.+. ....+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s-------r~~~vt 1105 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS-------RVEKVT 1105 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC-------ceEEEE
Confidence 5554 77777777 557788999987756999999999999999985422 1455554433 223455
Q ss_pred EcCCCCEEEEEecCCcEEEEEEccc--CC-c--cceeeecCC-CCCeEE-EEEcC-CCC-EEEEEeCCCeEEEEEcCCCc
Q 000346 119 LTPLQPVVFFGFHRRMSVTVVGTVE--GG-R--APTKIKTDL-KKPIVN-LACHP-RLP-VLYVAYADGLIRAYNIHTYA 189 (1630)
Q Consensus 119 ~spdg~~LaSgs~Dg~tI~IwDl~s--g~-~--~~i~il~gH-~~~Its-LafSP-dg~-lLaSgS~DGtIrIWDl~t~~ 189 (1630)
..+.++.+++++.|| .|++.++.. .. . .+..+...+ .+.+.+ -+|.. .+. .++.+..-+.|..||+++..
T Consensus 1106 ~~~~~~~~Av~t~DG-~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDG-SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred eccCCCeEEEEcCCC-eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 667788899999999 999988865 11 1 122222222 233333 33433 333 67788888999999999888
Q ss_pred EEEEEec---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEe-eccCCCeEEEEEeCCC---CEEE
Q 000346 190 VHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII-QVGSQPITSVAWLPML---RLLV 262 (1630)
Q Consensus 190 ~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL-~gH~~~VssVsfSPdG---~lLa 262 (1630)
...+++. .+.|+ +++.+|.+.|++.|+..|.+.+||++-+.+ +... ..+..++..+..+|-. ...+
T Consensus 1185 ~~w~lk~~~~hG~vT-----Si~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVT-----SIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred hHHhhhcCcccccee-----EEEecCCceEEEEecCCceEEEEEeecCce--eecccCcccCCcceEEeeccCCCCceEE
Confidence 8777775 56777 999999999999999999999999997765 3222 2445788888888743 3444
Q ss_pred EEE--CCCceEEEEeeee
Q 000346 263 TLC--RDGSLQVWKTRVI 278 (1630)
Q Consensus 263 SgS--~DGtIrIWDl~~~ 278 (1630)
+++ ..+.|.+|++...
T Consensus 1258 s~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecccCCCceeeeecccC
Confidence 444 4678999998754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-08 Score=119.73 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=151.8
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEE-------------------cCCCCEEEEEecCCc
Q 000346 74 GHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL-------------------TPLQPVVFFGFHRRM 134 (1630)
Q Consensus 74 g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~-------------------spdg~~LaSgs~Dg~ 134 (1630)
..++|....||.+|+||..+++....|.|.-+. +..++...|. +.+...++-|...+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g- 80 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG- 80 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc-
Confidence 678999999999999999999987777776543 1111122221 22334667777788
Q ss_pred EEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCC
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPT 213 (1630)
Q Consensus 135 tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPD 213 (1630)
.|.++++..+.......-..|.+.|.++.++.+-..|.+++.|+.+..|+......++.+.. ...+. +++++||
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~-----sl~is~D 155 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS-----SLCISPD 155 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc-----eEEEcCC
Confidence 99999998884222223357899999999999999999999999999999999999999987 67777 9999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-----CCEEEE-EECCCceEEEEeee
Q 000346 214 LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-----LRLLVT-LCRDGSLQVWKTRV 277 (1630)
Q Consensus 214 g~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-----G~lLaS-gS~DGtIrIWDl~~ 277 (1630)
|..+++++ +.|++||+++++ ++.++.+|.++|+++.|..+ |.++.+ ...+.-+.+|-+..
T Consensus 156 ~~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999887 699999999998 48999999999999999876 666554 44566788898764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-08 Score=108.63 Aligned_cols=148 Identities=15% Similarity=0.225 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEEC-----------CeEEEEECC-CCcEEEEEc--CCCCEEEEEEeCCCCCEEEEEE--CCCeEEE
Q 000346 25 HEAAFHPNQALIAVAIG-----------TYIIEFDTL-TGSRIASID--INSPVVRMAYSPTSGHAVVAIL--EDCTIRS 88 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-----------GtI~VWDl~-tg~~i~tl~--~~~~VtsVafSpd~g~lLaSgS--~DGtIrV 88 (1630)
-.+.|+|+|.+|++-.. +...+|.++ .+..+..+. .+++|.+++|+|+ ++.|++.. .+..|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~-g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN-GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC-CCEEEEEEccCCcccEE
Confidence 36889999997765433 235555552 234455554 3467999999999 77765543 4567777
Q ss_pred EECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC
Q 000346 89 CDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168 (1630)
Q Consensus 89 WDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg 168 (1630)
||++. ..+..+ +...+..+.|+|+|
T Consensus 88 yd~~~-----------------------------------------------------~~i~~~--~~~~~n~i~wsP~G 112 (194)
T PF08662_consen 88 YDVKG-----------------------------------------------------KKIFSF--GTQPRNTISWSPDG 112 (194)
T ss_pred EcCcc-----------------------------------------------------cEeEee--cCCCceEEEECCCC
Confidence 77520 111111 13456789999999
Q ss_pred CEEEEEeC---CCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC------CCeEEEEECCCCC
Q 000346 169 PVLYVAYA---DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR------RGTLLAWDVSIER 235 (1630)
Q Consensus 169 ~lLaSgS~---DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~------DGtVrVWDl~tgk 235 (1630)
++|++++. .|.|.+||.++.+.+.+..+.. +. .++|+|||+++++++. |+.++||++. |+
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t-----~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~ 181 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-AT-----DVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GR 181 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EE-----EEEEcCCCCEEEEEEeccceeccccEEEEEec-Ce
Confidence 99999874 4679999999988888877644 45 8999999999999874 7889999986 54
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-07 Score=112.32 Aligned_cols=211 Identities=14% Similarity=0.052 Sum_probs=136.8
Q ss_pred EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECC---CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEc
Q 000346 44 IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT 120 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~D---GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~s 120 (1630)
|.++|.+.+.......+...+...+|+|+ |+.|+..+.+ ..|.+||+.+++........ .......++
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--------g~~~~~~~S 251 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--------GLNGAPAWS 251 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------CCcCCeEEC
Confidence 88888886655444446688999999999 8888776643 36999999887652211111 111235778
Q ss_pred CCCCEEEEE-ecCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCCcEEEEEe
Q 000346 121 PLQPVVFFG-FHRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-D--GLIRAYNIHTYAVHYTLQ 195 (1630)
Q Consensus 121 pdg~~LaSg-s~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-D--GtIrIWDl~t~~~i~tL~ 195 (1630)
|+|..++.. +.++ ..|.+||..++ .. ..+..+........|+|||+.|+..+. + ..|.++|+.+++......
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~--~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASR--QL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCC--Ce-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 888877643 3232 26888898876 32 334445555677899999998776653 3 357788888776543322
Q ss_pred cCCceeecCcccEEEcCCCCEEEEEeCC-C--eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECC-CceE
Q 000346 196 LDNTIKLLGAGAFAFHPTLEWLFVGDRR-G--TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-GSLQ 271 (1630)
Q Consensus 196 ~~~~V~IsGi~sVafSPDg~~LaSgS~D-G--tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D-GtIr 271 (1630)
...... ...|+|||++|+..+.+ + .|.+||+.+++. ..+.. ........|+|||+.++..+.+ |.-+
T Consensus 329 ~~~~~~-----~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 329 VGNYNA-----RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV---RILTD-TSLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred CCCCcc-----ceEECCCCCEEEEEEccCCceEEEEEECCCCCE---EEccC-CCCCCCceECCCCCEEEEEEecCCceE
Confidence 222233 67899999999887653 3 578889998763 22322 2233467899999988776654 4444
Q ss_pred EEEe
Q 000346 272 VWKT 275 (1630)
Q Consensus 272 IWDl 275 (1630)
+|-+
T Consensus 400 l~~~ 403 (430)
T PRK00178 400 LMLV 403 (430)
T ss_pred EEEE
Confidence 4433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=126.73 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=139.6
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeec
Q 000346 74 GHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1630)
Q Consensus 74 g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~ 153 (1630)
...++.++.+..+.+||...+........+.+.. ....+.+-++++.-++++|+--+ .|.+|++.... .+. .+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g~s~~~~~i~~gsv~~-~iivW~~~~dn-~p~-~l~ 172 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIGDSAEELYIASGSVFG-EIIVWKPHEDN-KPI-RLK 172 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEE---EEeEEEEeccCcEEEEEeccccc-cEEEEeccccC-Ccc-eec
Confidence 3455666666777777765443211111111100 00112333455555788888888 99999998442 333 688
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEE--EEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEEC
Q 000346 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHY--TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~--tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl 231 (1630)
+|.+.|.++.|+-||+++++.|+|.++|+|++.+.+... -+.|...++ .+.|+|+ .+++++.|.+.++|+.
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw-----~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW-----ACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE-----EEEeccc--eeEEeccceEEEEEec
Confidence 999999999999999999999999999999999887655 333478888 9999998 8999999999999977
Q ss_pred CCCCceeEEEeeccC-CCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 232 SIERPSMIGIIQVGS-QPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 232 ~tgk~~lv~tL~gH~-~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
...+ +..+.+|. ..|+.+..+++...++|++.|+.+++|+...
T Consensus 246 ~~~~---l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NGTQ---LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccce---ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 6444 44677776 6799999999999999999999999999863
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-07 Score=114.30 Aligned_cols=219 Identities=11% Similarity=0.008 Sum_probs=136.4
Q ss_pred CcEEEEEcCCCCE--EEEEEC--Ce--EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEEC-CC----eEEEEEC
Q 000346 23 QPHEAAFHPNQAL--IAVAIG--TY--IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-DC----TIRSCDF 91 (1630)
Q Consensus 23 rV~~LaFSPdG~l--Lasgs~--Gt--I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~-DG----tIrVWDl 91 (1630)
...+-+|||||+. ++..+. +. |.+.++.+++........+.....+|+|| |+.|+..++ +| .+..|++
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD-G~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR-KKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC-CCEEEEEECCCCCcceeEEEeec
Confidence 3456799999985 322333 33 88889998876554444455667899999 887776653 22 3444666
Q ss_pred CCCcEEEEEcCCCCe--EEeec-CCeEEEEEcCCCCEEEEEec-CC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcC
Q 000346 92 DTEQSFVLHSPEKKM--ESISV-DTEVHLALTPLQPVVFFGFH-RR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1630)
Q Consensus 92 ~tge~~v~fspdg~~--asgs~-Dgtv~L~~spdg~~LaSgs~-Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP 166 (1630)
.++.. +.. ++... .......++|+|..|++.++ ++ ..|.++++.... .....+..+...+....|+|
T Consensus 265 ~~g~~-------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 265 ETGAI-------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred ccCCC-------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccceeECC
Confidence 54311 000 11111 11234578999998777664 33 134444443221 22344444556778899999
Q ss_pred CCCEEEEEeCC---CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC---CCeEEEEECCCCCceeEE
Q 000346 167 RLPVLYVAYAD---GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERPSMIG 240 (1630)
Q Consensus 167 dg~lLaSgS~D---GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~---DGtVrVWDl~tgk~~lv~ 240 (1630)
||+.|+..+.+ ..|.+||+.+++..........+. ...|+|||++|+..+. +..|.+||+..++. .
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~-----~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~---~ 408 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKE-----SPSWAIDSLHLVYSAGNSNESELYLISLITKKT---R 408 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCcc-----ceEECCCCCEEEEEECCCCCceEEEEECCCCCE---E
Confidence 99988877643 479999999887654333334555 8899999998876543 35688889987763 3
Q ss_pred EeeccCCCeEEEEEeCCC
Q 000346 241 IIQVGSQPITSVAWLPML 258 (1630)
Q Consensus 241 tL~gH~~~VssVsfSPdG 258 (1630)
.+......+...+|+|-.
T Consensus 409 ~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 409 KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EeecCCCcccCceecCCC
Confidence 333345567788888753
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-08 Score=111.09 Aligned_cols=205 Identities=14% Similarity=0.135 Sum_probs=148.7
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEEcccCC-ccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-CCCcEE
Q 000346 114 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI-HTYAVH 191 (1630)
Q Consensus 114 tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~-~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl-~t~~~i 191 (1630)
+.+.++++++..++.+.... .|.+|...... .....++..|...|+.++|+|..+.|++|+.|..-++|.. ..++-.
T Consensus 13 itchAwn~drt~iAv~~~~~-evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNH-EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred eeeeeecCCCceEEeccCCc-eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 34557778888888888887 88888887653 4678889999999999999999999999999999999998 433333
Q ss_pred EEE---ecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeE--EEeeccCCCeEEEEEeCCCCEEEEEEC
Q 000346 192 YTL---QLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI--GIIQVGSQPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 192 ~tL---~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv--~tL~gH~~~VssVsfSPdG~lLaSgS~ 266 (1630)
.++ ......+ ++.|+|..+.+++|+.-+.|.||-+.....+-+ ++-..+.+.|.+++|||++-++++||.
T Consensus 92 ptlvLlRiNrAAt-----~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 92 PTLVLLRINRAAT-----CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred cceeEEEecccee-----eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 333 2367777 999999999999999999999998775432211 223456788999999999999999999
Q ss_pred CCceEEEEeeeecC---CCCCCCccccccCCccccccccccccccCCcccccCCCeEEEEeCCCCCceeEeecc
Q 000346 267 DGSLQVWKTRVIIN---PNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAVLLFAN 337 (1630)
Q Consensus 267 DGtIrIWDl~~~~~---pnk~~~~a~fFe~~~I~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~Alvfa~ 337 (1630)
|+..||+..-+..- |...+....+ .+-..+++.+ +.-.-+..+.|.|+.|-++.+-++
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~---------PFG~lm~E~~----~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKM---------PFGQLMSEAS----SSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCC---------cHHHHHHhhc----cCCCceeeeEeCCCCCEeeEecCC
Confidence 99999998763322 2222222222 1222333322 122335678999999988865443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=116.65 Aligned_cols=211 Identities=17% Similarity=0.159 Sum_probs=136.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-C---eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEECCC--eEEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG-T---YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDC--TIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-G---tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS~DG--tIrVWDl~tge 95 (1630)
.+.+.+|+|||++|+.+.. + .|.+||+.+++......+.+.+.+++|+|+ ++.|+ +.+.++ .|++||+.++.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD-GSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC-CCEEEEEECCCCCccEEEEECCCCC
Confidence 4778899999999998875 2 499999998876554445566778999999 77665 444444 58888987765
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC--cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg--~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
...... .........+++++..+++.+... ..|.++|..++ . ...+..+...+..+.|+|++++++.
T Consensus 270 ~~~l~~--------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~-~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 270 LTRLTN--------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--E-VRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEECCC--------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--C-EEEeecCCCCccCeEECCCCCEEEE
Confidence 411111 011112346678888877665432 15777777655 3 2333444566778899999999998
Q ss_pred EeCCC---eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCC---eEEEEECCCCCceeEEEeeccCC
Q 000346 174 AYADG---LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~DG---tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DG---tVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
++.++ .|.+||+.++... .+....... ...|+||+++|+..+.++ .+.+.+.. +.. ...+..+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~-----~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~--~~~~~~~~g 409 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGER-VLTDTGLDE-----SPSFAPNGRMILYATTRGGRGVLGLVSTD-GRF--RARLPLGNG 409 (417)
T ss_pred EEccCCceEEEEEeCCCCCeE-EccCCCCCC-----CceECCCCCEEEEEEeCCCcEEEEEEECC-Cce--eeECCCCCC
Confidence 88776 7999998876543 333222334 678999999988877654 34444543 332 333443344
Q ss_pred CeEEEEE
Q 000346 248 PITSVAW 254 (1630)
Q Consensus 248 ~VssVsf 254 (1630)
.+..++|
T Consensus 410 ~~~~~~w 416 (417)
T TIGR02800 410 DVREPAW 416 (417)
T ss_pred CcCCCCC
Confidence 4444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=121.78 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=96.3
Q ss_pred CCcEEEEEcCCCCEEEEEEC--CeEEEEECC--------------CC--------------cEEEEEc-CCCCEEEEEEe
Q 000346 22 LQPHEAAFHPNQALIAVAIG--TYIIEFDTL--------------TG--------------SRIASID-INSPVVRMAYS 70 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~--GtI~VWDl~--------------tg--------------~~i~tl~-~~~~VtsVafS 70 (1630)
.+|+|+.|-|.+..++.... |.+.+||.. .+ ..+..+. ..+.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 48999999996654444433 889998653 11 1122233 33678999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcccee
Q 000346 71 PTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1630)
Q Consensus 71 pd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~ 150 (1630)
|| |++||+.+.||.+||||+.+.+..-.+. ....+-.+++|+|||++|++|+.|. -|.+|.+..+ +.+.
T Consensus 300 ~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mk-------SYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er--RVVA 368 (636)
T KOG2394|consen 300 PD-GKYLATVSQDGFLRIFDFDTQELLGVMK-------SYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER--RVVA 368 (636)
T ss_pred CC-CceEEEEecCceEEEeeccHHHHHHHHH-------hhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc--eEEE
Confidence 98 9999999999999999998765411111 1233456777888888888888888 7888888776 6666
Q ss_pred eecCCCCCeEEEEEcC
Q 000346 151 IKTDLKKPIVNLACHP 166 (1630)
Q Consensus 151 il~gH~~~ItsLafSP 166 (1630)
.-.+|+.+|..++|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 6778888888888874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-07 Score=115.89 Aligned_cols=214 Identities=17% Similarity=0.158 Sum_probs=134.8
Q ss_pred CcEEEEEcCCCCEEEEEEC--C--eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEE-EECCCe--EEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG--T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA-ILEDCT--IRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--G--tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaS-gS~DGt--IrVWDl~tge 95 (1630)
.+.+..|||||++|+..+. + .|.+||+.+++........+.....+|+|+ |+.|+. .+.++. |++||+++++
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD-GKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC-CCEEEEEEeCCCCeEEEEEECCCCC
Confidence 5678999999999988765 3 399999998876433323344557899999 776654 556664 7777887765
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecC-C-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHR-R-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~D-g-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
... .. ..........++|++..++..+.. + ..|.++|..++ ..... ..+.......+|+|||++|+.
T Consensus 298 ~~~-lt-------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g--~~~~L-t~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 298 LTR-IT-------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG--KVSRL-TFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred eEE-Cc-------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence 411 11 111112345678888877766543 2 25677777666 32222 212233456799999998877
Q ss_pred EeC-CC--eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC-CC--eEEEEECCCCCceeEEEeeccCC
Q 000346 174 AYA-DG--LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RG--TLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~-DG--tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~-DG--tVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.+. ++ .|.++|+.++... .+....... ...|+|||++|+..+. ++ .+.+++.. +.. ...+..+..
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~-----~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~--~~~l~~~~g 437 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTSTRLDE-----SPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRF--KARLPAGQG 437 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCCCCCC-----CceECCCCCEEEEEEecCCceEEEEEECC-CCc--eEECcCCCC
Confidence 654 33 4666788777653 333222223 5689999998877664 33 36677764 442 555666666
Q ss_pred CeEEEEEeCC
Q 000346 248 PITSVAWLPM 257 (1630)
Q Consensus 248 ~VssVsfSPd 257 (1630)
.+...+|+|-
T Consensus 438 ~~~~p~Wsp~ 447 (448)
T PRK04792 438 EVKSPAWSPF 447 (448)
T ss_pred CcCCCccCCC
Confidence 7788888873
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=116.23 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=122.0
Q ss_pred cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC------CCcEEEEEec--CCceeecCcccEEEcCCCCEEE
Q 000346 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH------TYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLF 218 (1630)
Q Consensus 147 ~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~------t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~La 218 (1630)
.|.+.+.+|.+.|..+.|+.++++|++|+.|..+++|++. +.+++....+ ...|. |++|....+.++
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF-----~L~F~~~N~~~~ 121 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIF-----SLEFDLENRFLY 121 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceE-----EEEEccCCeeEe
Confidence 4666778999999999999999999999999999999976 3455555544 46777 999999999999
Q ss_pred EEeCCCeEEEEECCCCCceeEEEee--ccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecCCCCCCCccccccCCcc
Q 000346 219 VGDRRGTLLAWDVSIERPSMIGIIQ--VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASI 296 (1630)
Q Consensus 219 SgS~DGtVrVWDl~tgk~~lv~tL~--gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~pnk~~~~a~fFe~~~I 296 (1630)
+|..+++|...|+.+.+. +..+. ...+.|..+..||..+.|++.+.+|.|.+||.+...++-.+...++.
T Consensus 122 SG~~~~~VI~HDiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~------ 193 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS------ 193 (609)
T ss_pred cCCCcceeEeeeccccee--eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC------
Confidence 999999999999999875 43332 22358999999999999999999999999999876654333333322
Q ss_pred ccccccccccccCCcccccCCCeEEEEeCCCCCcee
Q 000346 297 ESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 332 (1630)
Q Consensus 297 ~slDi~~iLs~~gge~vy~l~ri~~v~~HPk~Nl~A 332 (1630)
+ ..|.++.|||..+..-
T Consensus 194 ------------------~-~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 194 ------------------G-KNFYTAEFHPETPALI 210 (609)
T ss_pred ------------------C-ccceeeeecCCCceeE
Confidence 1 3466789999876543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-07 Score=113.12 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCCEEEEEEC--C--eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEECCC--eEEEEECCCCc
Q 000346 23 QPHEAAFHPNQALIAVAIG--T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AILEDC--TIRSCDFDTEQ 95 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--G--tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS~DG--tIrVWDl~tge 95 (1630)
.+.+.+|||||+.|+..+. + .|.+||+.+++........+.+...+|+|+ |+.|+ +.+.++ .|++||+.+++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD-G~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD-GSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC-CCEEEEEEccCCCceEEEEECCCCC
Confidence 5788899999999988765 2 399999998876543333355667899999 87776 444454 68888988776
Q ss_pred EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC--cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEE
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg--~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaS 173 (1630)
... +.. .........++|++..++..++.. ..|.++|+.++ ....... .........|+|+++.++.
T Consensus 279 ~~~-lt~-------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g--~~~~lt~-~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 279 LSR-VTN-------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG--RAERVTF-VGNYNARPRLSADGKTLVM 347 (430)
T ss_pred eEE-ccc-------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEeec-CCCCccceEECCCCCEEEE
Confidence 421 111 111122346788888776665432 25777777666 3322221 1233456789999999887
Q ss_pred EeCC-C--eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCC---CeEEEEECCCCCceeEEEeeccCC
Q 000346 174 AYAD-G--LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~D-G--tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D---GtVrVWDl~tgk~~lv~tL~gH~~ 247 (1630)
.+.+ + .|.+||+.++.. ..+....... ...|+|||++++..+.+ ..+.++++.... ...+..+..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~-----~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~---~~~l~~~~g 418 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV-RILTDTSLDE-----SPSVAPNGTMLIYATRQQGRGVLMLVSINGRV---RLPLPTAQG 418 (430)
T ss_pred EEccCCceEEEEEECCCCCE-EEccCCCCCC-----CceECCCCCEEEEEEecCCceEEEEEECCCCc---eEECcCCCC
Confidence 7643 3 588899988765 3333322223 67899999998877653 346666775433 334555556
Q ss_pred CeEEEEEeCC
Q 000346 248 PITSVAWLPM 257 (1630)
Q Consensus 248 ~VssVsfSPd 257 (1630)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 6777888873
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-08 Score=120.11 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=131.7
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCC----------cEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTG----------SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg----------~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
.|.|++..+.+..+++|+. |+|+.|++... .....+.+| +.|+.+++|+. ...|++++.||++|.|+
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWE 424 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeec
Confidence 7999999999999999998 88999965411 234455656 89999999998 88999999999999999
Q ss_pred CCCCcE-------------EEEEcCCC----------------------Ce-E--------EeecCCeEEEEEcCCCCEE
Q 000346 91 FDTEQS-------------FVLHSPEK----------------------KM-E--------SISVDTEVHLALTPLQPVV 126 (1630)
Q Consensus 91 l~tge~-------------~v~fspdg----------------------~~-a--------sgs~Dgtv~L~~spdg~~L 126 (1630)
...... .+.+.... .. + ....+....+..+|..+..
T Consensus 425 ~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 425 PTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred cCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 754432 11111000 00 0 0011223567788999999
Q ss_pred EEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 000346 127 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL 194 (1630)
Q Consensus 127 aSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL 194 (1630)
+++..++ .|+++|..++ ..+.....|...++++++.|+|.+|++++.|+.+++|.+....++...
T Consensus 505 ~~~hed~-~Ir~~dn~~~--~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 505 FTAHEDR-SIRFFDNKTG--KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred EecccCC-ceeccccccc--ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 9999999 9999999999 788888889999999999999999999999999999998877665443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=115.15 Aligned_cols=217 Identities=13% Similarity=0.158 Sum_probs=144.8
Q ss_pred EEcCCCCEEEEEEeCCCCCEE-EEEECCCeEEEEECCCCcE---------EEEEc---CCCCe-EEeecCCe--------
Q 000346 57 SIDINSPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQS---------FVLHS---PEKKM-ESISVDTE-------- 114 (1630)
Q Consensus 57 tl~~~~~VtsVafSpd~g~lL-aSgS~DGtIrVWDl~tge~---------~v~fs---pdg~~-asgs~Dgt-------- 114 (1630)
.|++....+.|..+|| |+++ ++|...-.|++||+..-.. .+.|. -|-.. +.-..|..
T Consensus 47 dfe~p~ast~ik~s~D-GqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPD-GQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred hcCCccccceeEecCC-CcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 3344467889999999 6654 5566778999999976544 11111 11100 11111111
Q ss_pred -----------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 000346 115 -----------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAY 183 (1630)
Q Consensus 115 -----------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIW 183 (1630)
+.+..+.-.--+++++... .|.-+++..| ..+..+......++++..++-..+|++|+.||.|-.|
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~-evYRlNLEqG--rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQG--RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCc-ceEEEEcccc--ccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 1111222222244444444 6788888888 5666666667899999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCceee-------cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC
Q 000346 184 NIHTYAVHYTLQLDNTIKL-------LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 184 Dl~t~~~i~tL~~~~~V~I-------sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP 256 (1630)
|.++...+.++.....|+- ..++++.|+.+|-.+++|+.+|.|.|||+++.++.++ .-.+...+|..+.|.+
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQD 281 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccc
Confidence 9998887777764222110 0134999999999999999999999999999987333 2223347888999977
Q ss_pred C--CCEEEEEECCCceEEEEeeeec
Q 000346 257 M--LRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 257 d--G~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
. +..++|. ....++|||-.+..
T Consensus 282 ~~~q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 282 TDQQNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred cCCCceEEec-chHHhhhcccccCC
Confidence 5 4455553 34589999976443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-06 Score=109.67 Aligned_cols=212 Identities=14% Similarity=0.051 Sum_probs=132.6
Q ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECC---CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEE
Q 000346 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~D---GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~ 119 (1630)
.|.++|...........+...+.+..|+|| |++|+..+.+ ..|++||+.+++........ .......+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--------g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--------GINGAPRF 269 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEEecCCC--------CCcCCeeE
Confidence 377778775544333345578999999999 8888776543 25888998877642111111 11124578
Q ss_pred cCCCCEEEEE-ecCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCcEEEEE
Q 000346 120 TPLQPVVFFG-FHRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHTYAVHYTL 194 (1630)
Q Consensus 120 spdg~~LaSg-s~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-DG--tIrIWDl~t~~~i~tL 194 (1630)
+|++..++.. +.++ ..|.++|+.++ . ...+..+.......+|+||++.|+..+. ++ .|.++|+.+++.....
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg--~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATK--A-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCC--C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 8898877654 3333 24777887766 3 3334445556678899999998876653 33 5777788777654332
Q ss_pred ecCCceeecCcccEEEcCCCCEEEEEeC-CC--eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECC-Cc-
Q 000346 195 QLDNTIKLLGAGAFAFHPTLEWLFVGDR-RG--TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-GS- 269 (1630)
Q Consensus 195 ~~~~~V~IsGi~sVafSPDg~~LaSgS~-DG--tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D-Gt- 269 (1630)
....... ..+|+|||++|+..+. ++ .|.++|+.+++. ..+..+ .......|+|||+.|+..+.+ |.
T Consensus 347 ~~g~~~~-----~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~ 417 (448)
T PRK04792 347 FEGEQNL-----GGSITPDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQ 417 (448)
T ss_pred cCCCCCc-----CeeECCCCCEEEEEEecCCceEEEEEECCCCCe---EEccCC-CCCCCceECCCCCEEEEEEecCCce
Confidence 2222233 6799999999887765 34 455568887763 233322 123356899999988766654 43
Q ss_pred -eEEEEe
Q 000346 270 -LQVWKT 275 (1630)
Q Consensus 270 -IrIWDl 275 (1630)
+++++.
T Consensus 418 ~l~~~~~ 424 (448)
T PRK04792 418 VLAAVSI 424 (448)
T ss_pred EEEEEEC
Confidence 444443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-06 Score=108.23 Aligned_cols=216 Identities=13% Similarity=0.071 Sum_probs=130.3
Q ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCE--E-EEEECCC--eEEEEECCCCcE-EEEEcCCCCeEEeecCCeEE
Q 000346 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHA--V-VAILEDC--TIRSCDFDTEQS-FVLHSPEKKMESISVDTEVH 116 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~l--L-aSgS~DG--tIrVWDl~tge~-~v~fspdg~~asgs~Dgtv~ 116 (1630)
.|.+.|.+.+...........+.+-+|+|| |+. + .+...++ .|.+.++.+++. .+... ......
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---------~g~~~~ 235 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---------QGNQLM 235 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEeecC---------CCCccc
Confidence 377778876555443334467788899999 754 2 2343443 577778877654 22111 112234
Q ss_pred EEEcCCCCEEEEEecC----CcEEEEEEcccCC-ccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE--EcCC-
Q 000346 117 LALTPLQPVVFFGFHR----RMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAY--NIHT- 187 (1630)
Q Consensus 117 L~~spdg~~LaSgs~D----g~tI~IwDl~sg~-~~~i~il~gH~~~ItsLafSPdg~lLaSgS-~DGtIrIW--Dl~t- 187 (1630)
..++|+|..|+..+.. ...+..|+...+. ........++.......+|+|||+.|+..+ .+|...+| ++..
T Consensus 236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 5678888777765531 1134456665431 033333333334456789999999877665 46655555 4432
Q ss_pred CcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCC---CeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEE
Q 000346 188 YAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 188 ~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~D---GtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaS 263 (1630)
+.....+.. ...+. ...|+|||++|+..+.+ ..|.+||+.+++. ..+......+....|+|||+.|+.
T Consensus 316 g~~~~~lt~~~~~~~-----~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~wSpDG~~L~f 387 (428)
T PRK01029 316 GQSPRLLTKKYRNSS-----CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPSWAIDSLHLVY 387 (428)
T ss_pred ccceEEeccCCCCcc-----ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceEECCCCCEEEE
Confidence 222333433 34455 88999999999877643 4689999998873 334433446778999999998875
Q ss_pred EEC-CC--ceEEEEee
Q 000346 264 LCR-DG--SLQVWKTR 276 (1630)
Q Consensus 264 gS~-DG--tIrIWDl~ 276 (1630)
.+. ++ .|++||+.
T Consensus 388 ~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 388 SAGNSNESELYLISLI 403 (428)
T ss_pred EECCCCCceEEEEECC
Confidence 443 33 46666654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=107.64 Aligned_cols=247 Identities=13% Similarity=0.174 Sum_probs=154.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc-E-----------------EEEEcCCCCEEEEEEeCCC-CCEEEEEEC
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS-R-----------------IASIDINSPVVRMAYSPTS-GHAVVAILE 82 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~-~-----------------i~tl~~~~~VtsVafSpd~-g~lLaSgS~ 82 (1630)
.|+++.|...|.+|++|.. |+|.+|.-+... | ++.++....|..+.|..++ ...++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 8999999999999999998 779998765322 1 1112222568889988552 346666779
Q ss_pred CCeEEEEECCCCcE----------EEEEcCCC------------------CeEEeec---------CCeEEEEEcCCCCE
Q 000346 83 DCTIRSCDFDTEQS----------FVLHSPEK------------------KMESISV---------DTEVHLALTPLQPV 125 (1630)
Q Consensus 83 DGtIrVWDl~tge~----------~v~fspdg------------------~~asgs~---------Dgtv~L~~spdg~~ 125 (1630)
|.+|++|.+..... .+ .+|.+ ..+++.. -..-.+.+..+...
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~-~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSF-HSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred Cceeeeeeeecccchhhhcccccccc-ccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 99999999865532 11 11111 0111111 01123444555555
Q ss_pred EEEEecCCcEEEEEEcccCCccceee--ecCC-----CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCcE----EEE
Q 000346 126 VFFGFHRRMSVTVVGTVEGGRAPTKI--KTDL-----KKPIVNLACHPR-LPVLYVAYADGLIRAYNIHTYAV----HYT 193 (1630)
Q Consensus 126 LaSgs~Dg~tI~IwDl~sg~~~~i~i--l~gH-----~~~ItsLafSPd-g~lLaSgS~DGtIrIWDl~t~~~----i~t 193 (1630)
++++ +|- .|.+|++.... .+..+ ...| ..-|++..|||. ...+.-.+..|.|++-|++.... ...
T Consensus 187 ~lSa-DdL-rINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 187 LLSA-DDL-RINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeec-cce-eeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 5443 344 79999987543 33322 2333 345788999994 45666777899999999984321 111
Q ss_pred Eec-CCceee-------cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccC------------CCe---E
Q 000346 194 LQL-DNTIKL-------LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS------------QPI---T 250 (1630)
Q Consensus 194 L~~-~~~V~I-------sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~------------~~V---s 250 (1630)
+.. ..++.. ..+..+.|+++|+|+++-+ =-+|+|||++..+. ++.++.-|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~-pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN-PIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC-CceeechHHHHHHHHHhhhhccceeeeE
Confidence 111 111111 1234889999999998764 46899999987543 366665443 222 3
Q ss_pred EEEEeCCCCEEEEEECCCceEEEEe
Q 000346 251 SVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 251 sVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
.+.|+.|.+.+.+||.....-|+-+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5788989999999998888877753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-06 Score=101.79 Aligned_cols=187 Identities=16% Similarity=0.188 Sum_probs=125.9
Q ss_pred CCEEEEEEC--CeEEEEECCCCcEEEEEcCCCCE-EEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEe
Q 000346 33 QALIAVAIG--TYIIEFDTLTGSRIASIDINSPV-VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESI 109 (1630)
Q Consensus 33 G~lLasgs~--GtI~VWDl~tg~~i~tl~~~~~V-tsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asg 109 (1630)
++++++... +.|.+.|..+.+.+.++.....+ ..+.|+|| ++++.+++.||.|.++|+.+++..-... .
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~-------~ 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIK-------V 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEe-------c
Confidence 456655554 77999999999999999955444 45789999 9999999999999999999887633322 1
Q ss_pred ecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecC-------CCCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 000346 110 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD-------LKKPIVNLACHPRLPVLYVAYA-DGLIR 181 (1630)
Q Consensus 110 s~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g-------H~~~ItsLafSPdg~lLaSgS~-DGtIr 181 (1630)
......+.++++|.++++++.....+.++|..+. +.++.+.. ....+..+..+|....++++-. .+.|.
T Consensus 77 -G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~ 153 (369)
T PF02239_consen 77 -GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIW 153 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEE
T ss_pred -CCCcceEEEcCCCCEEEEEecCCCceeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEE
Confidence 1134668888999998887754449999999887 56665532 2346778888888886666655 48888
Q ss_pred EEEcCCCcEE--EEEecCCceeecCcccEEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 000346 182 AYNIHTYAVH--YTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIER 235 (1630)
Q Consensus 182 IWDl~t~~~i--~tL~~~~~V~IsGi~sVafSPDg~~LaSgS-~DGtVrVWDl~tgk 235 (1630)
+.|....+.. ..+....... ...|+|+++|++++. .++.|-++|..+++
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~-----D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPH-----DGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEE-----EEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEeccccccceeeeccccccc-----ccccCcccceeeecccccceeEEEeeccce
Confidence 8897765433 3333356666 889999999987754 46678888887654
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-06 Score=100.64 Aligned_cols=209 Identities=13% Similarity=0.185 Sum_probs=145.0
Q ss_pred CcEEEEEcCCCCEEEEEEC-----------CeEEEEECCCCcEEEEEcCCC--------CEEEEEEeCCCCCEEEEEE-C
Q 000346 23 QPHEAAFHPNQALIAVAIG-----------TYIIEFDTLTGSRIASIDINS--------PVVRMAYSPTSGHAVVAIL-E 82 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-----------GtI~VWDl~tg~~i~tl~~~~--------~VtsVafSpd~g~lLaSgS-~ 82 (1630)
+.+.+ +||||+.|+++.. +.|.+||..+.+.+..+.... ....++++|+ |+++.... .
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~ 125 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFS 125 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC-CCEEEEecCC
Confidence 44555 9999998887766 559999999999999988422 2348899999 88887665 4
Q ss_pred -CCeEEEEECCCCcE-------------------EEEEcCCCCe--EEeecCCe-----EEEE--------EcC-----C
Q 000346 83 -DCTIRSCDFDTEQS-------------------FVLHSPEKKM--ESISVDTE-----VHLA--------LTP-----L 122 (1630)
Q Consensus 83 -DGtIrVWDl~tge~-------------------~v~fspdg~~--asgs~Dgt-----v~L~--------~sp-----d 122 (1630)
+..|.+.|+.+++. ...++.|+.. ++...++. ..+. ..| +
T Consensus 126 p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d 205 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS 205 (352)
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence 79999999998876 2223444444 11111111 1111 122 6
Q ss_pred CCEEEEEecCCcEEEEEEcccCC---ccceeeecC-------CCCCeEEEEEcCCCCEEEEEe----------CCCeEEE
Q 000346 123 QPVVFFGFHRRMSVTVVGTVEGG---RAPTKIKTD-------LKKPIVNLACHPRLPVLYVAY----------ADGLIRA 182 (1630)
Q Consensus 123 g~~LaSgs~Dg~tI~IwDl~sg~---~~~i~il~g-------H~~~ItsLafSPdg~lLaSgS----------~DGtIrI 182 (1630)
+.+++.... + +|.+.|+.... ......+.. ..+.+.-++++|+++.+++.. ..+.|.+
T Consensus 206 g~~~~vs~e-G-~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 206 GRLVWPTYT-G-KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CcEEEEecC-C-eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 666666666 7 89999954331 022222211 123334599999999888853 2257999
Q ss_pred EEcCCCcEEEEEecCCceeecCcccEEEcCCCC-EEEEEe-CCCeEEEEECCCCCceeEEEe
Q 000346 183 YNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE-WLFVGD-RRGTLLAWDVSIERPSMIGII 242 (1630)
Q Consensus 183 WDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~-~LaSgS-~DGtVrVWDl~tgk~~lv~tL 242 (1630)
+|..+++.+..+.....++ .++++||++ +|++.. .++.|.++|..+++. +.++
T Consensus 284 iD~~t~kvi~~i~vG~~~~-----~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~--i~~i 338 (352)
T TIGR02658 284 VDAKTGKRLRKIELGHEID-----SINVSQDAKPLLYALSTGDKTLYIFDAETGKE--LSSV 338 (352)
T ss_pred EECCCCeEEEEEeCCCcee-----eEEECCCCCeEEEEeCCCCCcEEEEECcCCeE--Eeee
Confidence 9999999999998877787 999999999 888776 578899999998874 6555
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.6e-07 Score=108.48 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=150.5
Q ss_pred cEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEEC-----------CCeEEEEECC
Q 000346 24 PHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-----------DCTIRSCDFD 92 (1630)
Q Consensus 24 V~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~-----------DGtIrVWDl~ 92 (1630)
=+-+.|||.|.+|++-....|.+|--.+-..++.+ .|-.|.-+.|||. .++|+|-+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHPGVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCCCceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEcc
Confidence 35789999999999988888999986554444444 3467899999999 999998662 2579999999
Q ss_pred CCcE---------------EEEEcCCCCe-EEeecCCe---------------------EEEEEcCCCCEEEEEec----
Q 000346 93 TEQS---------------FVLHSPEKKM-ESISVDTE---------------------VHLALTPLQPVVFFGFH---- 131 (1630)
Q Consensus 93 tge~---------------~v~fspdg~~-asgs~Dgt---------------------v~L~~spdg~~LaSgs~---- 131 (1630)
+|.. .+.||.++++ +....++. ....++|.+.+|+.-..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 9976 5678888777 33222221 11223344333332110
Q ss_pred -----------------------------------CCcE-----------------EEEEEcccCCccceeeecCCCCCe
Q 000346 132 -----------------------------------RRMS-----------------VTVVGTVEGGRAPTKIKTDLKKPI 159 (1630)
Q Consensus 132 -----------------------------------Dg~t-----------------I~IwDl~sg~~~~i~il~gH~~~I 159 (1630)
|.++ +.++.++... .++.. -..+..|
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~-velke~v 448 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEV-VELKESV 448 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCcee-eecchhe
Confidence 0000 0111111110 00000 1225567
Q ss_pred EEEEEcCCCCEEEEEeC---CCeEEEEEcCC-C---cEEEEEecCCceeecCcccEEEcCCCCEEEEEe---CCCeEEEE
Q 000346 160 VNLACHPRLPVLYVAYA---DGLIRAYNIHT-Y---AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD---RRGTLLAW 229 (1630)
Q Consensus 160 tsLafSPdg~lLaSgS~---DGtIrIWDl~t-~---~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS---~DGtVrVW 229 (1630)
...+|-|.|+.+++-+. ..++.+|.+.+ . +.+..+. ....+ .+.|+|.|++++++. ..|.+.++
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N-----~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFAN-----TVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccc-----eEEEcCCCcEEEEEEecccccceEEE
Confidence 78899999998877653 35788888773 2 2233332 24455 899999999998775 57899999
Q ss_pred ECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC------ceEEEEee
Q 000346 230 DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG------SLQVWKTR 276 (1630)
Q Consensus 230 Dl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG------tIrIWDl~ 276 (1630)
|+....+..+. ...| ...+.+.|.|.|+|++|++.-+ --+||++.
T Consensus 523 D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 523 DTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 98853321121 1223 3457899999999999998543 34566554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-05 Score=95.75 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=142.6
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCC-CcEEEE---EcC-----------CCCEEEEEEeCCCCCEEEEEE-CCC
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLT-GSRIAS---IDI-----------NSPVVRMAYSPTSGHAVVAIL-EDC 84 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~t-g~~i~t---l~~-----------~~~VtsVafSpd~g~lLaSgS-~DG 84 (1630)
.+..++++|++++|+++.. |.|.++++.. |..... +.+ .....++.|+|+ ++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-g~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-GRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-SSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC-CCEEEEEecCCC
Confidence 7788999999999999997 6699999986 443222 211 155889999999 88777765 345
Q ss_pred eEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcc--cCCccceeeecC----C--C
Q 000346 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV--EGGRAPTKIKTD----L--K 156 (1630)
Q Consensus 85 tIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~--sg~~~~i~il~g----H--~ 156 (1630)
.|++|+++.....+.. ..........+-+++.++|++++++.......+|.++++. .+....+..... . .
T Consensus 167 ~v~~~~~~~~~~~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp EEEEEEE-TTS-TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred EEEEEEEeCCCceEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 8999998765421100 0000011234668999999999888877766689999988 331122222211 1 2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC--CCc--EEEEEec-CCceeecCcccEEEcCCCCEEEEEe-CCCeEEEE
Q 000346 157 KPIVNLACHPRLPVLYVAY-ADGLIRAYNIH--TYA--VHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGD-RRGTLLAW 229 (1630)
Q Consensus 157 ~~ItsLafSPdg~lLaSgS-~DGtIrIWDl~--t~~--~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS-~DGtVrVW 229 (1630)
.....++++|||++|+++. .+++|.+|+++ ++. .+..+.. ...-+ .++++|+|++|+++. .++.|.+|
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr-----~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR-----HFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE-----EEEE-TTSSEEEEEETTTTEEEEE
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc-----EEEEeCCCCEEEEEecCCCeEEEE
Confidence 2678999999999888766 66789999994 333 3333433 34455 899999999999887 46789999
Q ss_pred ECC--CCCceeEEEeeccCCCeEEEEE
Q 000346 230 DVS--IERPSMIGIIQVGSQPITSVAW 254 (1630)
Q Consensus 230 Dl~--tgk~~lv~tL~gH~~~VssVsf 254 (1630)
++. ++........ ..-....||.|
T Consensus 320 ~~d~~tG~l~~~~~~-~~~~~p~ci~f 345 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSS-VPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEE-EESSSEEEEEE
T ss_pred EEeCCCCcEEEeccc-ccCCCCEEEeC
Confidence 764 5552112111 12344566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.2e-08 Score=108.14 Aligned_cols=156 Identities=11% Similarity=0.086 Sum_probs=115.3
Q ss_pred CcEEEEEcC-CCC-EEE-EEEC-CeEEEEECCCCcEEEE----------Ec-CCCCEEEEEEeCCCCCEEEEEECCCeEE
Q 000346 23 QPHEAAFHP-NQA-LIA-VAIG-TYIIEFDTLTGSRIAS----------ID-INSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1630)
Q Consensus 23 rV~~LaFSP-dG~-lLa-sgs~-GtI~VWDl~tg~~i~t----------l~-~~~~VtsVafSpd~g~lLaSgS~DGtIr 87 (1630)
.+.|..|.. ++. .|+ +|.. |+|.+||+.++..+.. .. |..+|.++.|.+. -..=++|+.+..+.
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLV 230 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccce
Confidence 677777543 333 344 4444 8899999998743322 22 4489999999876 56667888888899
Q ss_pred EEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC
Q 000346 88 SCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR 167 (1630)
Q Consensus 88 VWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd 167 (1630)
.|+++.....+... ...+...-|.-.+..-||++++++++.|+ .|++|.+++. .+..++..|+..|++++|+|+
T Consensus 231 ~~Sl~~s~gslq~~---~e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl--~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIR---KEITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTL--NPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeccccCccccc---ceEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccC--CchhhhhhhhcceeEEEeCCC
Confidence 99875431111100 00111122334456678999999999999 9999999999 899999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEc
Q 000346 168 LPVLYVAYADGLIRAYNI 185 (1630)
Q Consensus 168 g~lLaSgS~DGtIrIWDl 185 (1630)
..++|.++.|++|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=118.95 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=108.1
Q ss_pred ceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcC--CCCEEEEEeCC
Q 000346 148 PTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHP--TLEWLFVGDRR 223 (1630)
Q Consensus 148 ~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSP--Dg~~LaSgS~D 223 (1630)
..+.+.||++.|.++.|+.+|.+|++||+|-.+.|||.-..+.++.+.. ...|. ++.|-| +.+.+++|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF-----svKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF-----SVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-----EEeeeccCCCeEEEeccCc
Confidence 3456789999999999999999999999999999999988888888774 67787 999999 56789999999
Q ss_pred CeEEEEECCCCC--------ceeEEEeeccCCCeEEEEEeCCC-CEEEEEECCCceEEEEeeee
Q 000346 224 GTLLAWDVSIER--------PSMIGIIQVGSQPITSVAWLPML-RLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 224 GtVrVWDl~tgk--------~~lv~tL~gH~~~VssVsfSPdG-~lLaSgS~DGtIrIWDl~~~ 278 (1630)
..|+++|+...+ ......+..|...|..++-.|++ ..+.++++||+|+-+|++..
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 999999998521 11245567899999999999998 68899999999999999853
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-06 Score=102.64 Aligned_cols=241 Identities=13% Similarity=0.202 Sum_probs=158.2
Q ss_pred CCCCcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECC---------------C
Q 000346 20 KPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILED---------------C 84 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~D---------------G 84 (1630)
....+..++|||.|.+|++.....|.+|.......+..+ .|..|..+.|+|. +.+|++-+.. .
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RHPDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee-ecCCceecccCcc-cceeeeeccCCccChhhccCCccccC
Confidence 345788999999999999988888999998877644443 4568999999999 9999986533 3
Q ss_pred eEEEEECCCCcE---------------EEE------------------------------------------EcCCCCe-
Q 000346 85 TIRSCDFDTEQS---------------FVL------------------------------------------HSPEKKM- 106 (1630)
Q Consensus 85 tIrVWDl~tge~---------------~v~------------------------------------------fspdg~~- 106 (1630)
.+.+||..+|.. .+. ++|.+..
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~ 188 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHD 188 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCc
Confidence 589999988866 111 2222111
Q ss_pred E--E-----eecCCe----------------------EEEEEcCCCCEEEEEe-----------cCCcEEEEEEcccCCc
Q 000346 107 E--S-----ISVDTE----------------------VHLALTPLQPVVFFGF-----------HRRMSVTVVGTVEGGR 146 (1630)
Q Consensus 107 a--s-----gs~Dgt----------------------v~L~~spdg~~LaSgs-----------~Dg~tI~IwDl~sg~~ 146 (1630)
. . ...... +.+-|++.|.++++-- ... .+.++++...
T Consensus 189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges-nLyl~~~~e~-- 265 (561)
T COG5354 189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES-NLYLLRITER-- 265 (561)
T ss_pred eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc-eEEEEeeccc--
Confidence 0 0 000001 2222333333322110 011 3444444422
Q ss_pred cceeeecCCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC--
Q 000346 147 APTKIKTDLKKPIVNLACHPRLPVLYVAY--ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-- 222 (1630)
Q Consensus 147 ~~i~il~gH~~~ItsLafSPdg~lLaSgS--~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~-- 222 (1630)
.+ ....+..++|...+|.|+++.+++.+ .+..+.++|++.. +.+.+. ...-+ .+.|+|.++|++.++-
T Consensus 266 ~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~~rN-----T~~fsp~~r~il~agF~n 337 (561)
T COG5354 266 SI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQKRN-----TIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-Ccccc-----cccccCcccEEEEecCCc
Confidence 12 22225578999999999888766654 7889999999865 444443 33334 6789999999999875
Q ss_pred -CCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEE------CCCceEEEEee
Q 000346 223 -RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC------RDGSLQVWKTR 276 (1630)
Q Consensus 223 -DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS------~DGtIrIWDl~ 276 (1630)
.|.+.+||...... ++..+.+ .+.+-+.|+|||+++.+.. .|..|.|||+.
T Consensus 338 l~gni~i~~~~~rf~-~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 338 LQGNIEIFDPAGRFK-VAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccceEEeccCCceE-EEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 46899999885432 4545554 3456788999999887654 46789999987
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=112.90 Aligned_cols=216 Identities=13% Similarity=0.183 Sum_probs=144.7
Q ss_pred EEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----------------EEEEcCCCCeEEeecCCeEEE-
Q 000346 56 ASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS----------------FVLHSPEKKMESISVDTEVHL- 117 (1630)
Q Consensus 56 ~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~----------------~v~fspdg~~asgs~Dgtv~L- 117 (1630)
..+. |++.|..|.|+.. |.+|++|++|..|.+||+..+.. .+-++.+...++.+.|+.+++
T Consensus 136 ~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4455 4499999999999 99999999999999999977654 111222222255555554332
Q ss_pred ------------------------EEcCCC-CEEEEEecCCcEEEEEEcccCCccc-eeeecCCCC---CeEEEEEcCCC
Q 000346 118 ------------------------ALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAP-TKIKTDLKK---PIVNLACHPRL 168 (1630)
Q Consensus 118 ------------------------~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~-i~il~gH~~---~ItsLafSPdg 168 (1630)
+.-|.. ..+.+++.|+ .+.-+|++.+.... ......+.. ....++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~-~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDA-VVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCccccccccc-ceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 233333 2467888999 88888988763111 112222333 56889999965
Q ss_pred C-EEEEEeCCCeEEEEEcCCCcE------EEEEe-----cCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 000346 169 P-VLYVAYADGLIRAYNIHTYAV------HYTLQ-----LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 169 ~-lLaSgS~DGtIrIWDl~t~~~------i~tL~-----~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~ 236 (1630)
. .+++++.|..+++||.+.... +..+. .+.. .++++++|+.++.-|+++-.|-.|+++.-.-+.-
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~---v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP---VNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc---ccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5 899999999999999874321 12221 1222 2356999998877777777788899984332210
Q ss_pred ----------eeE-EEeeccCC--CeEEEEE-eCCCCEEEEEECCCceEEEEee
Q 000346 237 ----------SMI-GIIQVGSQ--PITSVAW-LPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 237 ----------~lv-~tL~gH~~--~VssVsf-SPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..+ ..+++|.+ .|..+-| -|...|+++||.=|.|.||+-.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 123 33788874 3666655 5888999999999999999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-06 Score=104.94 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=146.0
Q ss_pred CCCCEEEEEEC-CeEEEEECCCCcEEEEEcC--C--CCEEEEEEe------C-------------CCCCEEEEEECCCeE
Q 000346 31 PNQALIAVAIG-TYIIEFDTLTGSRIASIDI--N--SPVVRMAYS------P-------------TSGHAVVAILEDCTI 86 (1630)
Q Consensus 31 PdG~lLasgs~-GtI~VWDl~tg~~i~tl~~--~--~~VtsVafS------p-------------d~g~lLaSgS~DGtI 86 (1630)
|.+.++|.... |.+++||+.+++....+.. + +..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44567777777 7799999999998887762 2 555555553 2 024567888889999
Q ss_pred EEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC
Q 000346 87 RSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP 166 (1630)
Q Consensus 87 rVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP 166 (1630)
.+|++..++....++.+++ ..+...+.++.+-..+.+++.|. .+..|+.... ..+.++.+.+..+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h-----~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~--~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKH-----YGNVNEILDAQRLGCIYSVGADL-KVVYILEKEK--VIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCC-----CCcceeeecccccCceEecCCce-eEEEEecccc--eeeeeeccCCCccceEEEcC
Confidence 9999998887666664432 33344555566777899999999 9999999888 77888888888999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCC-----CCEEEEEe-CCCeEEEEECCC
Q 000346 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPT-----LEWLFVGD-RRGTLLAWDVSI 233 (1630)
Q Consensus 167 dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPD-----g~~LaSgS-~DGtVrVWDl~t 233 (1630)
|+..+++++ ++|++||+++.+.+.+|.| ...|+ ++.|--+ |.+++++. .+..+.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~-----t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVR-----TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceE-----EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999987 7999999999999999998 88898 8888776 67776654 466677885543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.1e-06 Score=111.95 Aligned_cols=246 Identities=13% Similarity=0.084 Sum_probs=156.3
Q ss_pred CCcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEcC--C-------------CCEEEEEEeCCCCCEEEEE-ECC
Q 000346 22 LQPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDI--N-------------SPVVRMAYSPTSGHAVVAI-LED 83 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~~--~-------------~~VtsVafSpd~g~lLaSg-S~D 83 (1630)
..+..+++++++..++++.. +.|++||.. +..+..+.. . .....++++++ ++.|.++ ...
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~-gn~LYVaDt~n 645 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK-KNLLYVADTEN 645 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC-CCEEEEEeCCC
Confidence 34567999986555555554 559999986 554444332 1 23588999998 6655444 456
Q ss_pred CeEEEEECCCCcEEEEEcCCCCe---EEee-------cCCeEEEEEcCC-CCEEEEEecCCcEEEEEEcccCCccceeee
Q 000346 84 CTIRSCDFDTEQSFVLHSPEKKM---ESIS-------VDTEVHLALTPL-QPVVFFGFHRRMSVTVVGTVEGGRAPTKIK 152 (1630)
Q Consensus 84 GtIrVWDl~tge~~v~fspdg~~---asgs-------~Dgtv~L~~spd-g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il 152 (1630)
+.|+++|..++... .+...|.. ..++ ...-..++++++ +.++++.+.++ .|++||..++. .. .+
T Consensus 646 ~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~-~I~v~d~~~g~--v~-~~ 720 (1057)
T PLN02919 646 HALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH-QIWEYNISDGV--TR-VF 720 (1057)
T ss_pred ceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC-eEEEEECCCCe--EE-EE
Confidence 78999998776541 12111111 0000 112256788884 44555555666 89999987652 11 11
Q ss_pred c---------CC------CCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCcEEEEEecC-------------Cc----
Q 000346 153 T---------DL------KKPIVNLACHPRLPVLY-VAYADGLIRAYNIHTYAVHYTLQLD-------------NT---- 199 (1630)
Q Consensus 153 ~---------gH------~~~ItsLafSPdg~lLa-SgS~DGtIrIWDl~t~~~i~tL~~~-------------~~---- 199 (1630)
. ++ -.....++++|++..|+ +-+.++.|++||+.++.......+. +.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 1 11 12346799999998555 4456789999999876542211000 00
Q ss_pred eeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec--------------cCCCeEEEEEeCCCCEEEEEE
Q 000346 200 IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV--------------GSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 200 V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g--------------H~~~VssVsfSPdG~lLaSgS 265 (1630)
....+...++++++|..+++-+.++.|++||..++.. .++.+ +......++++++|+++++-+
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v---~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV---TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE---EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 0011234789999999888888899999999987762 22222 123567899999999999999
Q ss_pred CCCceEEEEeee
Q 000346 266 RDGSLQVWKTRV 277 (1630)
Q Consensus 266 ~DGtIrIWDl~~ 277 (1630)
.+++|++||+.+
T Consensus 878 ~Nn~Irvid~~~ 889 (1057)
T PLN02919 878 NNSLIRYLDLNK 889 (1057)
T ss_pred CCCEEEEEECCC
Confidence 999999999864
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-08 Score=117.87 Aligned_cols=243 Identities=13% Similarity=0.173 Sum_probs=163.3
Q ss_pred CCCcEEEEEcCCC---CEEEEEECCeEEEEECCC--CcEEEEE-cCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 21 PLQPHEAAFHPNQ---ALIAVAIGTYIIEFDTLT--GSRIASI-DIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 21 p~rV~~LaFSPdG---~lLasgs~GtI~VWDl~t--g~~i~tl-~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
|.+|-.+.|+|.. .++++.+...-.+|++.. ...+.-+ .+| ..|+++.|+++....+++++.|..+..||+++
T Consensus 67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 5567788888743 355655555577898852 3334333 345 88999999998788999999999999999876
Q ss_pred CcE-EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEE
Q 000346 94 EQS-FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVL 171 (1630)
Q Consensus 94 ge~-~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lL 171 (1630)
-.. ...|+ ....+...+.++-..+.+...++.. .|.+||.+.+. .+...+++|...|..++|+. ....+
T Consensus 147 p~~p~ys~~-------~w~s~asqVkwnyk~p~vlasshg~-~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 147 PHRPFYSTS-------SWRSAASQVKWNYKDPNVLASSHGN-DIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEI 217 (1081)
T ss_pred CCcceeeee-------cccccCceeeecccCcchhhhccCC-ceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhh
Confidence 543 11111 1122223344444444455555666 79999999997 88888899999999999986 34568
Q ss_pred EEEeCCCeEEEEEcCCCc--EEEEEecCCceeecCcccEEEcCCC--CEEEEEeCCCeEEE---------EECCCCCcee
Q 000346 172 YVAYADGLIRAYNIHTYA--VHYTLQLDNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLLA---------WDVSIERPSM 238 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~--~i~tL~~~~~V~IsGi~sVafSPDg--~~LaSgS~DGtVrV---------WDl~tgk~~l 238 (1630)
.+++.|++|+.||..... ..++......|+ .-.|-|-| .++.-.-.+..+.+ |+..++. ..
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw-----~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-~p 291 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW-----RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-TP 291 (1081)
T ss_pred cccCCCCceeeecccccccccceeccccCcce-----eccccccCceeEeccccCCeeeeeccccchhhhhccccCC-cc
Confidence 889999999999987543 333333355665 56666633 33322222233444 4433331 24
Q ss_pred EEEeeccCCCeEEEEEeCCCC----------EEEEEECCCceEEEEeeee
Q 000346 239 IGIIQVGSQPITSVAWLPMLR----------LLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~----------lLaSgS~DGtIrIWDl~~~ 278 (1630)
+.++.||...|....|-..+. -|+|-|.|.++|+|.+...
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 889999999988777754221 5899999999999998743
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-05 Score=90.18 Aligned_cols=249 Identities=13% Similarity=0.135 Sum_probs=165.5
Q ss_pred CCcEEEEEcCCCCEEEEEEC----CeEEEEECCC--CcEEEEEc--CC-CCEEEEEEeCCCCCEEEEEE-CCCeEEEEEC
Q 000346 22 LQPHEAAFHPNQALIAVAIG----TYIIEFDTLT--GSRIASID--IN-SPVVRMAYSPTSGHAVVAIL-EDCTIRSCDF 91 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~----GtI~VWDl~t--g~~i~tl~--~~-~~VtsVafSpd~g~lLaSgS-~DGtIrVWDl 91 (1630)
..++-|+|+|++++|.++.. |.|..|.++. |+....-+ .. .+-..++++++ +++++++. .-|.|.++-+
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED-GRFVFVANYHSGSVSVYPL 118 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC-CCEEEEEEccCceEEEEEc
Confidence 37889999999999988876 3376666653 65433222 22 44488999999 98888887 4589999988
Q ss_pred CC-CcE----EEEEcCCC-CeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee-cCCCCCeEEEEE
Q 000346 92 DT-EQS----FVLHSPEK-KMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-TDLKKPIVNLAC 164 (1630)
Q Consensus 92 ~t-ge~----~v~fspdg-~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-~gH~~~ItsLaf 164 (1630)
+. |.. .+..+... ...---.......-+.|+++++++.+-..-.|.+|++..+........ -.-...-+.|.|
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F 198 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF 198 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE
Confidence 65 433 11111111 000000011234567899999988876555789999987741111111 112445688999
Q ss_pred cCCCCEEEEEe-CCCeEEEEEcCCC----cEEEEEe-------cCCceeecCcccEEEcCCCCEEEEEeC-CCeEEEEEC
Q 000346 165 HPRLPVLYVAY-ADGLIRAYNIHTY----AVHYTLQ-------LDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDV 231 (1630)
Q Consensus 165 SPdg~lLaSgS-~DGtIrIWDl~t~----~~i~tL~-------~~~~V~IsGi~sVafSPDg~~LaSgS~-DGtVrVWDl 231 (1630)
||++++.++.+ .+++|-+|..... +.++++. +..+.. .+..++||++|.++.+ ...|.+|.+
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a-----aIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA-----AIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee-----EEEECCCCCEEEEecCCCCeEEEEEE
Confidence 99999877666 7899999998863 2223322 133343 8899999999999875 446777766
Q ss_pred CC--CCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC-ceEEEEee
Q 000346 232 SI--ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG-SLQVWKTR 276 (1630)
Q Consensus 232 ~t--gk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG-tIrIWDl~ 276 (1630)
.. ++..++.....+...-+...++++|++|+++.+|+ .|.+|..+
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 54 44334555555666678999999999999888765 78899876
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-06 Score=98.76 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=136.5
Q ss_pred CCCCcEEEEEcCCCCEEEEEEC-CeEEEEECC----CCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 20 KPLQPHEAAFHPNQALIAVAIG-TYIIEFDTL----TGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~----tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
-|..+++++++++...|++|-. |++.-+.+. .....+.+. |..+|..+-|+-. ..++++.+.|..+.---.+.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeecc
Confidence 3568999999999999999999 888888654 333444445 4499999999987 88999999987764333332
Q ss_pred CcEEEEEcCCCCeEEee--cCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEE
Q 000346 94 EQSFVLHSPEKKMESIS--VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 94 ge~~v~fspdg~~asgs--~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lL 171 (1630)
+.. -|.+.... .+....+ .+.+.|...+ .|....+....-..+..+.+|...++++.|.+....|
T Consensus 146 ~~~------lg~Y~~~~~~t~~~~d~------~~~fvGd~~g-qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 146 GNR------LGGYNFETPASALQFDA------LYAFVGDHSG-QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred CCc------ccceEeeccCCCCceee------EEEEeccccc-ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 221 00110000 0000000 1344455555 5555555443336788899999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCcE-EEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000346 172 YVAYADGLIRAYNIHTYAV-HYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~t~~~-i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t 233 (1630)
++|+.|..+.+||+...+- ...+.+ .+.|. .+.+-+.-+.+++++.||.|.+||++.
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~-----~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ-----ALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhh-----hhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999875432 334444 77777 788877778899999999999999864
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=124.60 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=140.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc--CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID--INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~--~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.|+++.=||..++.++|+. |.|++|....++.+..++ +...|+.+.|+.+ |+.+..+..||.+.+|... .+..+.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-CCceeeeccCCceeecccC-Ccceec
Confidence 6789999999999999998 779999999999988888 4489999999999 8999999999999999975 222232
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEE---ecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFG---FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSg---s~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~ 176 (1630)
|....+ +...+.|.. ..+++. ++++ .+.+||+...+ ..-.+-..|.+.++++++-|+..+|++|+.
T Consensus 2288 ~qchnk-------~~~Df~Fi~--s~~~tag~s~d~~-n~~lwDtl~~~-~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2288 WQCHNK-------ALSDFRFIG--SLLATAGRSSDNR-NVCLWDTLLPP-MNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred cccCCc-------cccceeeee--hhhhccccCCCCC-cccchhcccCc-ccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 321111 111111111 222222 2345 89999987654 222233889999999999999999999999
Q ss_pred CCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 177 DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
+|.|++||++..+..++++. ++ ...++++|+..|.++||++..-.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~-------------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA-------------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh-------------hh-hhheeeccCcccceEEEEccccc
Confidence 99999999998877766653 23 45689999999999999998653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-06 Score=95.26 Aligned_cols=227 Identities=12% Similarity=0.112 Sum_probs=151.3
Q ss_pred CeEEEEECCCCcEEE--EEc--CCCCEEEEEEe--CCCCC-EEEEEECCCeEEEEECCCCcEEEEEcCCCCe-EEeecCC
Q 000346 42 TYIIEFDTLTGSRIA--SID--INSPVVRMAYS--PTSGH-AVVAILEDCTIRSCDFDTEQSFVLHSPEKKM-ESISVDT 113 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~--tl~--~~~~VtsVafS--pd~g~-lLaSgS~DGtIrVWDl~tge~~v~fspdg~~-asgs~Dg 113 (1630)
|.+.+|++...+.+. +++ .++.+..+.|. +++|. .++-+..+|.|.++.....+....+++-... .... -
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~--~ 123 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV--E 123 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe--e
Confidence 458888887665433 333 34778888887 33355 5566677899999987666555555543332 2111 2
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcEEE
Q 000346 114 EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAVHY 192 (1630)
Q Consensus 114 tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~~~i~ 192 (1630)
..++.+.+.+..++++..++ .+.+.+......+..+.++.|.-.+....|+. +.+++++|++|+.+..||++..+ .+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G-~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRG-SISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCC-cEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence 35677788888888888888 78766655553344557889999999999987 44689999999999999999433 12
Q ss_pred EEecCCceeecCcccEEEcC-CCCEEEEEeCCCeEEEEECCC-CCceeEEEeeccCCCeEEEEEeCCCC-EEEEEECCCc
Q 000346 193 TLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSI-ERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGS 269 (1630)
Q Consensus 193 tL~~~~~V~IsGi~sVafSP-Dg~~LaSgS~DGtVrVWDl~t-gk~~lv~tL~gH~~~VssVsfSPdG~-lLaSgS~DGt 269 (1630)
.+. ...+.-+|++++.-+| .+.+|++|+.|..|++||.++ +++ +..-. -.+.|+.+.++|.-. .+..++.-.-
T Consensus 202 i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP--l~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 202 IWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP--LFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eee-cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc--cccCc-cccceEEEEecchhhhHHHHHHHhcC
Confidence 222 2333334455887776 678999999999999999996 454 22111 237899999999532 2223333334
Q ss_pred eEEEEee
Q 000346 270 LQVWKTR 276 (1630)
Q Consensus 270 IrIWDl~ 276 (1630)
.+|-++.
T Consensus 278 ~ki~~~~ 284 (339)
T KOG0280|consen 278 AKILDSS 284 (339)
T ss_pred ceEEEec
Confidence 4555544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=113.06 Aligned_cols=185 Identities=10% Similarity=-0.005 Sum_probs=143.4
Q ss_pred CCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCC-----EEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC
Q 000346 32 NQALIAVAIG-TYIIEFDTLTGSRIASIDINSP-----VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKK 105 (1630)
Q Consensus 32 dG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~-----VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~ 105 (1630)
+...++.+.. +.+.+||...+.....+.+... ..-+-++++ .-++++|+.-+.|.+|+....+..+
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~p~------- 169 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNKPI------- 169 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCCcc-------
Confidence 3445566555 7799999998877777665422 222334555 6789999999999999975221111
Q ss_pred eEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000346 106 MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI 185 (1630)
Q Consensus 106 ~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl 185 (1630)
...++......+.++.+|.++++.|+|+ ++++|++.+.. .......+|+..|..+.|+|+ .+++++.|.+.++|+.
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDR-siRlW~i~s~~-~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDR-SIRLWPIDSRE-VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCc-ceeeeeccccc-ccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 1446666668889999999999999999 99999999884 444577899999999999988 9999999999999976
Q ss_pred CCCcEEEEEe-c-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000346 186 HTYAVHYTLQ-L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1630)
Q Consensus 186 ~t~~~i~tL~-~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg 234 (1630)
.. ..+.++. | .+.++ .++.+++..++++++.|+.+++||+...
T Consensus 246 ~~-~~l~~y~~h~g~~iw-----~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 NG-TQLEVYDEHSGKGIW-----KIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc-ceehhhhhhhhccee-----EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 53 3333444 3 67787 9999999999999999999999998853
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-05 Score=90.59 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=145.1
Q ss_pred eEEEEECCCC--cE--EEEEcCCCCEEEEEEeCCCCCEEEEEEC---CCeEEEEECCC--CcEEEEEcCCCCeEEeecCC
Q 000346 43 YIIEFDTLTG--SR--IASIDINSPVVRMAYSPTSGHAVVAILE---DCTIRSCDFDT--EQSFVLHSPEKKMESISVDT 113 (1630)
Q Consensus 43 tI~VWDl~tg--~~--i~tl~~~~~VtsVafSpd~g~lLaSgS~---DGtIrVWDl~t--ge~~v~fspdg~~asgs~Dg 113 (1630)
.|.+|++.+. +. ++.....+.++-++|+|+ ++.|.++-. +|.|-.|.++. |+.. +-. + .......
T Consensus 17 gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln--~-~~~~g~~ 90 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLN--R-QTLPGSP 90 (346)
T ss_pred ceEEEEEeCcccccchhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eee--c-cccCCCC
Confidence 3999998733 22 222223488999999999 877777764 46666666543 4331 110 0 0111223
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEEEccc-CCccceeeecCCCCC----------eEEEEEcCCCCEEEEEeC-CCeEE
Q 000346 114 EVHLALTPLQPVVFFGFHRRMSVTVVGTVE-GGRAPTKIKTDLKKP----------IVNLACHPRLPVLYVAYA-DGLIR 181 (1630)
Q Consensus 114 tv~L~~spdg~~LaSgs~Dg~tI~IwDl~s-g~~~~i~il~gH~~~----------ItsLafSPdg~lLaSgS~-DGtIr 181 (1630)
.+.+..++++.+++++......|.++-+.. |..........|.+. +....+.|++++|++.+. -..|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 478899999999999887766899998865 321222222334444 788999999999998873 34799
Q ss_pred EEEcCCCcEEEEEe----cCCceeecCcccEEEcCCCCEEEEEeC-CCeEEEEECCC--CCceeEEEee------ccCCC
Q 000346 182 AYNIHTYAVHYTLQ----LDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSI--ERPSMIGIIQ------VGSQP 248 (1630)
Q Consensus 182 IWDl~t~~~i~tL~----~~~~V~IsGi~sVafSPDg~~LaSgS~-DGtVrVWDl~t--gk~~lv~tL~------gH~~~ 248 (1630)
+|++..+.....-. ....-+ .+.|||++++..+.++ +++|.+|.+.. ++...++++. ....+
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPR-----Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPR-----HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred EEEcccCccccccccccCCCCCcc-----eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 99999775433222 123333 8999999999887775 99999999887 3322222221 11356
Q ss_pred eEEEEEeCCCCEEEEEEC-CCceEEEEee
Q 000346 249 ITSVAWLPMLRLLVTLCR-DGSLQVWKTR 276 (1630)
Q Consensus 249 VssVsfSPdG~lLaSgS~-DGtIrIWDl~ 276 (1630)
...|..++||++|.++.. ...|-+|.+.
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 788999999999987653 2356666554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-05 Score=91.98 Aligned_cols=231 Identities=14% Similarity=0.104 Sum_probs=137.9
Q ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEE-EEE---------CCCeEEEEECCCCcE---------------
Q 000346 42 TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVV-AIL---------EDCTIRSCDFDTEQS--------------- 96 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLa-SgS---------~DGtIrVWDl~tge~--------------- 96 (1630)
++|.+.|..+++.+..+.....-+.+ ++|| ++.|. +.+ .+..|.+||..+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 46999999999999999844333345 9999 55554 455 588999999998865
Q ss_pred ----EEEEcCCCCe-E-Eeec-CCeEEEEE-----------cCCCCEEEEEecCCcEEEEEEcccC-------Cccceee
Q 000346 97 ----FVLHSPEKKM-E-SISV-DTEVHLAL-----------TPLQPVVFFGFHRRMSVTVVGTVEG-------GRAPTKI 151 (1630)
Q Consensus 97 ----~v~fspdg~~-a-sgs~-Dgtv~L~~-----------spdg~~LaSgs~Dg~tI~IwDl~sg-------~~~~i~i 151 (1630)
.+.++++|+. . +.-. +..+.+.. .|++..++..+.+...+.+-|.... .+.....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 3566777776 2 2212 44444443 2344444444333222222222111 0000110
Q ss_pred ---ecCCCCCeE-EEEEcC-CCCEEEEEeCCCeEEEEEcCCC-----cEEEEEec---CCceeecCcccEEEcCCCCEEE
Q 000346 152 ---KTDLKKPIV-NLACHP-RLPVLYVAYADGLIRAYNIHTY-----AVHYTLQL---DNTIKLLGAGAFAFHPTLEWLF 218 (1630)
Q Consensus 152 ---l~gH~~~It-sLafSP-dg~lLaSgS~DGtIrIWDl~t~-----~~i~tL~~---~~~V~IsGi~sVafSPDg~~La 218 (1630)
+.+-..++. .-.|.+ ++.++++... |+|.+.|+... .....+.. .......|..-++++++++.++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111000000 003345 7888887776 99999996543 22222221 0111112222589999999888
Q ss_pred EEeC----------CCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC-EEEEEE-CCCceEEEEeeee
Q 000346 219 VGDR----------RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLC-RDGSLQVWKTRVI 278 (1630)
Q Consensus 219 SgS~----------DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~-lLaSgS-~DGtIrIWDl~~~ 278 (1630)
+... .+.|.++|..+++. +..+.. ...+..+.++||++ +|++.+ .++.|.+.|....
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 8531 25799999998874 666554 45889999999999 777666 5788999998643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-05 Score=108.91 Aligned_cols=210 Identities=12% Similarity=0.140 Sum_probs=141.1
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEcC------------------CCCEEEEEEeCCCCCEEEEEEC
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDI------------------NSPVVRMAYSPTSGHAVVAILE 82 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~~------------------~~~VtsVafSpd~g~lLaSgS~ 82 (1630)
++.++++++++..|+++.. +.|+++|..++. +.++.+ -...++++|+|+++.++++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 6899999999998888776 449999998765 333321 0234689999964778888888
Q ss_pred CCeEEEEECCCCcEEEEEcCCCCe--------EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceee---
Q 000346 83 DCTIRSCDFDTEQSFVLHSPEKKM--------ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI--- 151 (1630)
Q Consensus 83 DGtIrVWDl~tge~~v~fspdg~~--------asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~i--- 151 (1630)
++.|++||..++... .+..+|.. ..........+.+++++..++.+......|++||+.++. .....
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG-SRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecc
Confidence 999999999877542 23333221 111122335688899988666555443399999987653 11100
Q ss_pred ---------ecCC--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCC-c------e--eecCc
Q 000346 152 ---------KTDL--------KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDN-T------I--KLLGA 205 (1630)
Q Consensus 152 ---------l~gH--------~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~-~------V--~IsGi 205 (1630)
+..+ -.....++++++|.++++-+.++.|++||..++.......... . . .+...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 0000 1123588999999988888899999999998876653332110 0 0 00113
Q ss_pred ccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 206 GAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 206 ~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
..++++++|+.+++-+.++.|++||+.+++
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 478999999988888889999999999876
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=97.96 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=125.8
Q ss_pred EEEEEcCCCCEEEEEEC-CeEEEEECCCCcEE--EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 25 HEAAFHPNQALIAVAIG-TYIIEFDTLTGSRI--ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i--~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
-++.|++.+.-++++.. |.+.+-+....... +.++.| -+.+...|+..+.+++.+|++|+.+..||++....
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---- 200 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---- 200 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc----
Confidence 36677777777666666 66664444433332 355533 66777777765466777777777777777641100
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAYADGL 179 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLaSgS~DGt 179 (1630)
.+|. ..+-|...|.++.-+| ++.++++|+.|-.
T Consensus 201 ------------------------------------~i~~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 201 ------------------------------------FIWH----------NSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ------------------------------------eeee----------cceeeecceEEEecCCCCCceEEEeccccc
Confidence 1111 1123677788888887 6779999999999
Q ss_pred EEEEEcC-CCcEEEEEecCCceeecCcccEEEcCCC--CEEEEEeCCCeEEEEECCCCCce---eEEEeeccCCCeEEEE
Q 000346 180 IRAYNIH-TYAVHYTLQLDNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLLAWDVSIERPS---MIGIIQVGSQPITSVA 253 (1630)
Q Consensus 180 IrIWDl~-t~~~i~tL~~~~~V~IsGi~sVafSPDg--~~LaSgS~DGtVrVWDl~tgk~~---lv~tL~gH~~~VssVs 253 (1630)
|++||.+ .++++..-...+.|+ .+.++|.- +.|+++ .-+-.+|-+.+.+... .......|.+-+..-.
T Consensus 235 i~~~DtRnm~kPl~~~~v~GGVW-----Ri~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAKVGGGVW-----RIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred eeeeehhcccCccccCccccceE-----EEEecchhhhHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccc
Confidence 9999999 556665554477888 99999943 334444 4444677777765432 3445567777777777
Q ss_pred EeCCCCEEEEEE-CCCceE-EEEe
Q 000346 254 WLPMLRLLVTLC-RDGSLQ-VWKT 275 (1630)
Q Consensus 254 fSPdG~lLaSgS-~DGtIr-IWDl 275 (1630)
|.....+|+||| .|+.++ +|-.
T Consensus 309 Wd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 309 WDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cccccceeeeeeccccceeeeeee
Confidence 855556788877 477755 7743
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-07 Score=119.44 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=146.8
Q ss_pred CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEc
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT 141 (1630)
Q Consensus 62 ~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl 141 (1630)
..|+++.=||. ..+.++|+.||.|++|....++..++|...|. ....++.++.+|+....+..|+ .+.+|..
T Consensus 2209 ~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~------s~vtr~~f~~qGnk~~i~d~dg-~l~l~q~ 2280 (2439)
T KOG1064|consen 2209 ENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN------SRVTRSRFNHQGNKFGIVDGDG-DLSLWQA 2280 (2439)
T ss_pred CceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCc------chhhhhhhcccCCceeeeccCC-ceeeccc
Confidence 67888888998 89999999999999999988877777764433 2334567888899999999999 8999997
Q ss_pred ccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCC---cEEEEEecCCceeecCcccEEEcCCCC
Q 000346 142 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY---ADGLIRAYNIHTY---AVHYTLQLDNTIKLLGAGAFAFHPTLE 215 (1630)
Q Consensus 142 ~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS---~DGtIrIWDl~t~---~~i~tL~~~~~V~IsGi~sVafSPDg~ 215 (1630)
. . ++....+.|+.....+.|-- ..+++++ .++.+.+||.--. .++. ..|...++ +++|.|...
T Consensus 2281 ~-p--k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT-----~l~~~P~~q 2349 (2439)
T KOG1064|consen 2281 S-P--KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGAT-----VLAYAPKHQ 2349 (2439)
T ss_pred C-C--cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCce-----EEEEcCcce
Confidence 6 2 67777888999999988864 5667665 6789999996522 2333 23466666 999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 216 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 216 ~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
.|++|+.+|.|++||++..+. +++++. ++ ...++++++..|.++||++...
T Consensus 2350 llisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999999999999996652 333322 45 5679999999999999999843
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.006 Score=82.77 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=140.2
Q ss_pred CCcEEEEEcCCCCEEEEEEC-Ce----EEEEECCCCc---EEEEEc------CCCCEEEEEEeCCCCCEEEEEECCCeEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TY----IIEFDTLTGS---RIASID------INSPVVRMAYSPTSGHAVVAILEDCTIR 87 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-Gt----I~VWDl~tg~---~i~tl~------~~~~VtsVafSpd~g~lLaSgS~DGtIr 87 (1630)
..+...+|.+....+.++.. .. |.+....... .+..+. ..+.|.++.|.++ ...++.+..+|.|.
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d-~~~l~~~~~~Gdi~ 100 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLAD-SESLCIALASGDII 100 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccC-CCcEEEEECCceEE
Confidence 46788888887766555444 22 4444333222 334443 1268999999999 88888888999999
Q ss_pred EE----ECCCCcE-----------EEEEcCCCCe-EEeecCCeEEEEEcCCCCEEEEE----ecCC--cEEE-EEEcc-c
Q 000346 88 SC----DFDTEQS-----------FVLHSPEKKM-ESISVDTEVHLALTPLQPVVFFG----FHRR--MSVT-VVGTV-E 143 (1630)
Q Consensus 88 VW----Dl~tge~-----------~v~fspdg~~-asgs~Dgtv~L~~spdg~~LaSg----s~Dg--~tI~-IwDl~-s 143 (1630)
+. +..+... ++.||||... +..+.++.+.+.. .+-..+.-. .+-+ ..|. =|.-. +
T Consensus 101 ~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 101 LVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccC
Confidence 99 5544433 5566666665 3333333322211 111000000 0000 0000 00000 0
Q ss_pred ---C--Ccc-------c------eeeecCCCCCeEEEEEcCCCCEEEEEeC---C---CeEEEEEcCCCcEEEEEec-CC
Q 000346 144 ---G--GRA-------P------TKIKTDLKKPIVNLACHPRLPVLYVAYA---D---GLIRAYNIHTYAVHYTLQL-DN 198 (1630)
Q Consensus 144 ---g--~~~-------~------i~il~gH~~~ItsLafSPdg~lLaSgS~---D---GtIrIWDl~t~~~i~tL~~-~~ 198 (1630)
| ++. + ...+. +...-..++|-.||.+||+.+. + +.||||+-+ |....+-+. .+
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g 257 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG 257 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence 0 000 0 00111 3345578999999999999884 2 579999854 665555544 22
Q ss_pred ceeecCcccEEEcCCCCEEEEEeC---CCeEEEEECCCCCc-eeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 199 TIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERP-SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 199 ~V~IsGi~sVafSPDg~~LaSgS~---DGtVrVWDl~tgk~-~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
-- .+++|.|.|++|++... ...|.+|.-+--+. .+.-.+......|..+.|++|+.+||..-.|. |.+|.
T Consensus 258 Le-----~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 258 LE-----GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred cc-----CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 22 37899999999998875 45677776442111 01111223456799999999999999977665 99997
Q ss_pred ee
Q 000346 275 TR 276 (1630)
Q Consensus 275 l~ 276 (1630)
..
T Consensus 332 ~~ 333 (928)
T PF04762_consen 332 RS 333 (928)
T ss_pred ee
Confidence 64
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00014 Score=90.52 Aligned_cols=191 Identities=9% Similarity=0.004 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCCE-EEEEEC-C-e--EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEE-EECC--CeEEEEECCCC
Q 000346 23 QPHEAAFHPNQAL-IAVAIG-T-Y--IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA-ILED--CTIRSCDFDTE 94 (1630)
Q Consensus 23 rV~~LaFSPdG~l-Lasgs~-G-t--I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaS-gS~D--GtIrVWDl~tg 94 (1630)
....-.|||||+. ++..+. + . |.++|+.+++........+.+....|+|| |+.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPD-G~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKD-GSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCC-CCEEEEEEccCCCcEEEEEECCCC
Confidence 4568899999985 665444 2 3 99999999987666555566778889999 765554 4333 46777788776
Q ss_pred cE-EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC--cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEE
Q 000346 95 QS-FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 95 e~-~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg--~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lL 171 (1630)
+. .++.. ........++|+|..|+..++.. ..|.++|+.++ ...+.... ... ...|+|||+.|
T Consensus 268 ~~~~LT~~---------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g--~~~rlt~~-g~~--~~~~SPDG~~I 333 (419)
T PRK04043 268 TLTQITNY---------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG--SVEQVVFH-GKN--NSSVSTYKNYI 333 (419)
T ss_pred cEEEcccC---------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCC--CeEeCccC-CCc--CceECCCCCEE
Confidence 54 11111 11122346888888777766432 26778888766 33233221 111 24899999988
Q ss_pred EEEeCC---------CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCC-C--eEEEEECCCC
Q 000346 172 YVAYAD---------GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR-G--TLLAWDVSIE 234 (1630)
Q Consensus 172 aSgS~D---------GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D-G--tVrVWDl~tg 234 (1630)
+..+.. ..|.+.|+.++... .+....... ...|+|||+.|+..+.+ + .+.+.++...
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~-----~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQ-----FPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcC-----CeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 776643 36888888877653 333322233 68999999988776643 2 3555666543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=86.26 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=113.4
Q ss_pred EcC-CCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCC-eEEEEECCCCcEEEEEcCCCCe
Q 000346 29 FHP-NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC-TIRSCDFDTEQSFVLHSPEKKM 106 (1630)
Q Consensus 29 FSP-dG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DG-tIrVWDl~tge~~v~fspdg~~ 106 (1630)
|++ +|.+++..+.|...|.+...+-.++ +.+.+.|+-..+..+ ++-++.|..|| .+-|+|.++++.-..-.
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e~----- 399 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIEK----- 399 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEE-cCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEeeC-----
Confidence 444 6899999999998887776565443 233467999999888 77889999998 99999998886422111
Q ss_pred EEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC----eEEE
Q 000346 107 ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG----LIRA 182 (1630)
Q Consensus 107 asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG----tIrI 182 (1630)
.......+..+++|..++.+.+.. .+.++|+.++ ....+-+...+-|+.+.|||+++++|-+--+| .|++
T Consensus 400 ---~lg~I~av~vs~dGK~~vvaNdr~-el~vididng--nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 400 ---DLGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDNG--NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ---CccceEEEEEcCCCcEEEEEcCce-EEEEEEecCC--CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 122345677888998888888877 9999999998 55555555567899999999999999876554 6899
Q ss_pred EEcCCCcEE
Q 000346 183 YNIHTYAVH 191 (1630)
Q Consensus 183 WDl~t~~~i 191 (1630)
+|+.+++..
T Consensus 474 ydm~~~Kiy 482 (668)
T COG4946 474 YDMDGGKIY 482 (668)
T ss_pred EecCCCeEE
Confidence 998866543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-05 Score=94.72 Aligned_cols=216 Identities=15% Similarity=0.177 Sum_probs=140.9
Q ss_pred EEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCC-CCCEEEE-----EECCCeEEEEECCCCcE--
Q 000346 25 HEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPT-SGHAVVA-----ILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd-~g~lLaS-----gS~DGtIrVWDl~tge~-- 96 (1630)
++..|+.|..+.+--..+.+++|+..+-+.+..--+...|+.+.+||. ....+++ .|.-..|++|.+.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 688999988776655557799999887433322224488999999987 2344443 33456799998752211
Q ss_pred -------------EEEEcCCCCe--E--EeecCCe------------------------------EEEEEcCCCCEEEE-
Q 000346 97 -------------FVLHSPEKKM--E--SISVDTE------------------------------VHLALTPLQPVVFF- 128 (1630)
Q Consensus 97 -------------~v~fspdg~~--a--sgs~Dgt------------------------------v~L~~spdg~~LaS- 128 (1630)
.+.|++.|.- + +...|.+ ..+.|++++..++.
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence 5556655543 1 1111111 33455666654333
Q ss_pred -EecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCcEEEEEecCCceeecC
Q 000346 129 -GFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY---ADGLIRAYNIHTYAVHYTLQLDNTIKLLG 204 (1630)
Q Consensus 129 -gs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS---~DGtIrIWDl~t~~~i~tL~~~~~V~IsG 204 (1630)
|..-. .+.++|.+-. ++..+ -.++-.++-|+|.|++++.++ .-|.+-|||..+.+++..+...+..
T Consensus 289 yGfMPA-kvtifnlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt---- 358 (566)
T KOG2315|consen 289 YGFMPA-KVTIFNLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT---- 358 (566)
T ss_pred Eecccc-eEEEEcCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce----
Confidence 33333 6666765432 22222 356778899999999998877 5589999999998888888764444
Q ss_pred cccEEEcCCCCEEEEEeC------CCeEEEEECCCCCceeEEEeeccCC-CeEEEEEeCC
Q 000346 205 AGAFAFHPTLEWLFVGDR------RGTLLAWDVSIERPSMIGIIQVGSQ-PITSVAWLPM 257 (1630)
Q Consensus 205 i~sVafSPDg~~LaSgS~------DGtVrVWDl~tgk~~lv~tL~gH~~-~VssVsfSPd 257 (1630)
.+.|+|||++++|++. |+.++||++. |.. +.. .+-. ..+.+.|-|.
T Consensus 359 --~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~--l~~--~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 359 --VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSL--LHE--KMFKSELLQVEWRPF 411 (566)
T ss_pred --EEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cce--eeh--hhhhHhHhheeeeec
Confidence 5799999999999875 7889999998 442 211 1222 5788899874
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-05 Score=95.06 Aligned_cols=245 Identities=16% Similarity=0.127 Sum_probs=165.3
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCC-CCEEEEEEeCC-----------CCCEEEEEECCCeEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPT-----------SGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd-----------~g~lLaSgS~DGtIrVWD 90 (1630)
.-.+++|+|.| ++|.|++..|.+-|..+-+.++.+++| ..|+.+.|.|- ..-+|+++...|.|.+||
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 35678999977 788888888999999999999999966 88999999874 123677888889999999
Q ss_pred CCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCC-CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CC
Q 000346 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RL 168 (1630)
Q Consensus 91 l~tge~~v~fspdg~~asgs~Dgtv~L~~spdg-~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg 168 (1630)
+..+.....+++...-+ . ..+-++.-++. ..++.-+... +|.+|++.+| .....+........|+.+.| |.
T Consensus 96 ~~~~s~~~~l~~~~~~~---q-dl~W~~~rd~Srd~LlaIh~ss-~lvLwntdtG--~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSV---Q-DLCWVPARDDSRDVLLAIHGSS-TLVLWNTDTG--EKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred ehhhhhhhhhcCCCcch---h-heeeeeccCcchheeEEecCCc-EEEEEEccCC--ceeeccccCCcceeeeeeCCCCc
Confidence 98775533333221110 0 11122333333 4555555555 9999999999 44444444456677899999 77
Q ss_pred CEEEEEeCCCeEEEEEcCC-------CcEEEEEe-cCC------------ceeecC--------cccEEEcCCCCEEEEE
Q 000346 169 PVLYVAYADGLIRAYNIHT-------YAVHYTLQ-LDN------------TIKLLG--------AGAFAFHPTLEWLFVG 220 (1630)
Q Consensus 169 ~lLaSgS~DGtIrIWDl~t-------~~~i~tL~-~~~------------~V~IsG--------i~sVafSPDg~~LaSg 220 (1630)
+.+..-+..|.+.+-+.-. ++..+.-. +.. ..+-+. ...++|+|.-+.++..
T Consensus 169 rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi 248 (1062)
T KOG1912|consen 169 RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI 248 (1062)
T ss_pred ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE
Confidence 7888777788887776431 12222111 111 110000 1246789976666666
Q ss_pred eCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCC--CEEEEEECCCceEEEEeee
Q 000346 221 DRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML--RLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 221 S~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG--~lLaSgS~DGtIrIWDl~~ 277 (1630)
...+.+.|+|++-..+ +....-..+.+.-+.|-|++ ..|.+...||.+.+|--+.
T Consensus 249 ~~prellv~dle~~~~--l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 249 TFPRELLVFDLEYECC--LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EeccceEEEcchhhce--eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 6788899999997665 55555556667778887765 4799999999999997654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=93.34 Aligned_cols=207 Identities=11% Similarity=0.139 Sum_probs=133.5
Q ss_pred CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-----EEEE---cCCCCe-EEe-ecCCeEEEEEcCCC--CEEEEE
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-----FVLH---SPEKKM-ESI-SVDTEVHLALTPLQ--PVVFFG 129 (1630)
Q Consensus 62 ~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-----~v~f---spdg~~-asg-s~Dgtv~L~~spdg--~~LaSg 129 (1630)
.-|.+|.|.-. |.+|++|..+|.|.++.-+.... ...| .|+-.+ -+. -......+.+.+++ ..++..
T Consensus 26 diis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56899999999 99999999999999996432221 1111 111111 000 01112344444444 356667
Q ss_pred ecCCcEEEEEEcccCCccc---------------------------------eeee-cCCCCCeEEEEEcCCCCEEEEEe
Q 000346 130 FHRRMSVTVVGTVEGGRAP---------------------------------TKIK-TDLKKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 130 s~Dg~tI~IwDl~sg~~~~---------------------------------i~il-~gH~~~ItsLafSPdg~lLaSgS 175 (1630)
.+|. +|++|.+.....+. .+++ ..|+--|.++.++.|...++++
T Consensus 105 tNdk-tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDK-TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred cCCc-ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 7788 99999986542111 1111 4677789999999999998877
Q ss_pred CCCeEEEEEcCCCcEEEEEec---------CCceeecCcccEEEcCC-CCEEEEEeCCCeEEEEECCCCC-----cee--
Q 000346 176 ADGLIRAYNIHTYAVHYTLQL---------DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIER-----PSM-- 238 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~~---------~~~V~IsGi~sVafSPD-g~~LaSgS~DGtVrVWDl~tgk-----~~l-- 238 (1630)
+|=.|-+|++.--...+.+.. ..-| ++..|||. .++++-++..|+|++-|++... ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVI-----TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVI-----TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHH-----hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 578899999874332222221 1223 48899994 5678888889999999998421 000
Q ss_pred -------EEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 239 -------IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 239 -------v~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
...+.+--..|+.+.|+++|++|++-+. -+|++||++.
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 1112222367899999999999987432 5999999864
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00022 Score=83.91 Aligned_cols=232 Identities=19% Similarity=0.162 Sum_probs=140.9
Q ss_pred CCCcEEEEEcC-CCCEEEEEEC-Ce-EEEEECCCCcEEEEEcCC-CC--EEEEEEeCCCCCEEEEEEC-----CCeEEEE
Q 000346 21 PLQPHEAAFHP-NQALIAVAIG-TY-IIEFDTLTGSRIASIDIN-SP--VVRMAYSPTSGHAVVAILE-----DCTIRSC 89 (1630)
Q Consensus 21 p~rV~~LaFSP-dG~lLasgs~-Gt-I~VWDl~tg~~i~tl~~~-~~--VtsVafSpd~g~lLaSgS~-----DGtIrVW 89 (1630)
|.|.+.++.+| ++..++.+-. |+ ..+||..+++....+... ++ -=.-+||+| |++|.+.-. .|.|-||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEEEE
Confidence 56888999999 5556666666 77 999999999998888732 22 224689999 999988754 4789999
Q ss_pred ECCC-CcE------------EEEEcCCCCeEEeecCCeEEEEEcCCC--CEEEEEecCCcEEEEEEcccCCccceeee--
Q 000346 90 DFDT-EQS------------FVLHSPEKKMESISVDTEVHLALTPLQ--PVVFFGFHRRMSVTVVGTVEGGRAPTKIK-- 152 (1630)
Q Consensus 90 Dl~t-ge~------------~v~fspdg~~asgs~Dgtv~L~~spdg--~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-- 152 (1630)
|... -+. -+.+.|+++.+.....++ ..+|+. ..+=....+. .+...|..++.......+
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI---~Thpd~GR~kLNl~tM~p-sL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI---ETHPDSGRAKLNLDTMQP-SLVYLDARSGALLEQVELPP 158 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC---ccCcccCceecChhhcCC-ceEEEecCCCceeeeeecCc
Confidence 9983 233 334445553311111111 112221 0111122233 566677777731122234
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCe-------EEEEEcCCCcEEEEEec--------CCceeecCcccEEEcCCCCEE
Q 000346 153 TDLKKPIVNLACHPRLPVLYVAYADGL-------IRAYNIHTYAVHYTLQL--------DNTIKLLGAGAFAFHPTLEWL 217 (1630)
Q Consensus 153 ~gH~~~ItsLafSPdg~lLaSgS~DGt-------IrIWDl~t~~~i~tL~~--------~~~V~IsGi~sVafSPDg~~L 217 (1630)
..|...|..++++++|..++..-..|. |-+++ .+.....+.. .+.+ .+|++++++.++
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~-----gSIa~~~~g~~i 231 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYI-----GSIAADRDGRLI 231 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCce-----EEEEEeCCCCEE
Confidence 447788999999999876665543332 33333 2333333332 2334 499999999888
Q ss_pred EEEe-CCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 218 FVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 218 aSgS-~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
++++ ..+.+.+||..+++. +.... -..+..++..+++ +++|.+ .|.+
T Consensus 232 a~tsPrGg~~~~~d~~tg~~--~~~~~--l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRL--LGSVP--LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEECCCCCEEEEEECCCCCE--eeccc--cCceeeeeecCCc-eEEeCC-CccE
Confidence 6665 678899999999984 43322 2356677777776 555544 4443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00026 Score=84.69 Aligned_cols=215 Identities=15% Similarity=0.062 Sum_probs=147.6
Q ss_pred EcCCCCEEEEEECCeEEEEECCCCcEEEEEcCC-------------CCEEEEE-EeCCCCCEEEEEECCCeEEEEECCCC
Q 000346 29 FHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-------------SPVVRMA-YSPTSGHAVVAILEDCTIRSCDFDTE 94 (1630)
Q Consensus 29 FSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~-------------~~VtsVa-fSpd~g~lLaSgS~DGtIrVWDl~tg 94 (1630)
.+.||+.++....|.|.+||..+... ..++.. .++.-+. |++-+|.+++..|. |...+.+...+
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 35689999998889999999886653 223211 1111122 55555889988875 66666664333
Q ss_pred cEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 000346 95 QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 95 e~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSg 174 (1630)
-. +.. +...+....-...+..-++.|..|+-.+-++|..++ . .+.+...-+.|.++..+++|+.++++
T Consensus 352 ~~-iqv--------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--e-~kr~e~~lg~I~av~vs~dGK~~vva 419 (668)
T COG4946 352 YS-IQV--------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--E-VKRIEKDLGNIEAVKVSPDGKKVVVA 419 (668)
T ss_pred ee-EEc--------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--e-EEEeeCCccceEEEEEcCCCcEEEEE
Confidence 11 111 122222222333444467777777778999998877 3 34444456789999999999999999
Q ss_pred eCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCC----eEEEEECCCCCceeEEEeeccCCCe
Q 000346 175 YADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRG----TLLAWDVSIERPSMIGIIQVGSQPI 249 (1630)
Q Consensus 175 S~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DG----tVrVWDl~tgk~~lv~tL~gH~~~V 249 (1630)
.....|.+.|+.+++....=+. .+-|. .++|||+++|++-+--+| .|+++|+..++. .........=
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lIt-----df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki---y~vTT~ta~D 491 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLIT-----DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI---YDVTTPTAYD 491 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeE-----EEEEcCCceeEEEecCcceeeeeEEEEecCCCeE---EEecCCcccc
Confidence 9999999999999987554444 56676 999999999999887654 689999998873 3333334444
Q ss_pred EEEEEeCCCCEEEEEE
Q 000346 250 TSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS 265 (1630)
.+-+|.|||++|.--|
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 5678999999887655
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-05 Score=87.82 Aligned_cols=235 Identities=14% Similarity=0.171 Sum_probs=157.7
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEE-CCCCcEEEEEcCC--CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFD-TLTGSRIASIDIN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWD-l~tg~~i~tl~~~--~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v 98 (1630)
.++....-|..+-+.+.+. .+++||- .+.++.-..+.+. .+++++.+++. ...|+.|-+.|++.-+.+...-..+
T Consensus 26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 26 DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhc
Confidence 6777777777788888888 6699994 4566666666644 78999999998 8899999999999888763221111
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeE-----EEEEcCCCCEEEE
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV-----NLACHPRLPVLYV 173 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~It-----sLafSPdg~lLaS 173 (1630)
.+..+ ...+......+.++....++++.+.|. .+.---.+.+. . ..++++ ++.|. -.+..+
T Consensus 105 ~~~r~---~~~h~~~v~~~if~~~~e~V~s~~~dk-~~~~hc~e~~~--~------lg~Y~~~~~~t~~~~d--~~~~fv 170 (404)
T KOG1409|consen 105 TFLKD---YLAHQARVSAIVFSLTHEWVLSTGKDK-QFAWHCTESGN--R------LGGYNFETPASALQFD--ALYAFV 170 (404)
T ss_pred chhhh---hhhhhcceeeEEecCCceeEEEecccc-ceEEEeeccCC--c------ccceEeeccCCCCcee--eEEEEe
Confidence 11100 111122224455555556777777776 33322222221 0 111111 11111 114455
Q ss_pred EeCCCeEEEEEcC--CCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeE
Q 000346 174 AYADGLIRAYNIH--TYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPIT 250 (1630)
Q Consensus 174 gS~DGtIrIWDl~--t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~Vs 250 (1630)
|...|.|.+-.+. ....+.++.+ .+.+. +++|.+....|++|..|..+.+||+--.+. ....+.+|...|.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~-----~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVT-----CLKWDPGQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQ 244 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceE-----EEEEcCCCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhh
Confidence 6566666555433 3456666666 77887 999999999999999999999999985443 4677889999999
Q ss_pred EEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 251 SVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 251 sVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
.+...+--+.++++++||.|.+|+++..
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccce
Confidence 9998888889999999999999999843
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00046 Score=85.90 Aligned_cols=208 Identities=10% Similarity=-0.050 Sum_probs=126.9
Q ss_pred EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCE-EEEEEC---CCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEE
Q 000346 44 IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHA-VVAILE---DCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~l-LaSgS~---DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~ 119 (1630)
|.+-|.+... .+.+...+.+....|+|+ |+. ++..+. +..|+++|+.+++........+ ......+
T Consensus 171 l~~~d~dg~~-~~~~~~~~~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--------~~~~~~~ 240 (419)
T PRK04043 171 IVLADYTLTY-QKVIVKGGLNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--------MLVVSDV 240 (419)
T ss_pred EEEECCCCCc-eeEEccCCCeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--------cEEeeEE
Confidence 5555665333 333332247889999999 764 554443 3568999998886522222111 1123456
Q ss_pred cCCCCEEEEEec---CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCcEEEE
Q 000346 120 TPLQPVVFFGFH---RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DG--LIRAYNIHTYAVHYT 193 (1630)
Q Consensus 120 spdg~~LaSgs~---Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-DG--tIrIWDl~t~~~i~t 193 (1630)
+|+|..++.... +. .|.++|+.++ ... .+..+........|+|||+.|+..+. .+ .|.++|+.+++..+.
T Consensus 241 SPDG~~la~~~~~~g~~-~Iy~~dl~~g--~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQP-DIYLYDTNTK--TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred CCCCCEEEEEEccCCCc-EEEEEECCCC--cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 888876654332 33 6788887666 332 33333333445689999998777663 22 688888888776443
Q ss_pred EecCCceeecCcccEEEcCCCCEEEEEeCC---------CeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEE
Q 000346 194 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRR---------GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 264 (1630)
Q Consensus 194 L~~~~~V~IsGi~sVafSPDg~~LaSgS~D---------GtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSg 264 (1630)
... .. . ...|+|||++|+..+.. ..|.+.|+.++. ...+..+. ......|+|||+.|+..
T Consensus 317 t~~-g~-~-----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~~-~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 317 VFH-GK-N-----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTANG-VNQFPRFSSDGGSIMFI 385 (419)
T ss_pred ccC-CC-c-----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCCC-CcCCeEECCCCCEEEEE
Confidence 322 11 2 34899999998877653 267788988876 33444332 33468999999988776
Q ss_pred ECCC-ceEEEEee
Q 000346 265 CRDG-SLQVWKTR 276 (1630)
Q Consensus 265 S~DG-tIrIWDl~ 276 (1630)
+.++ .-.+|-++
T Consensus 386 ~~~~~~~~L~~~~ 398 (419)
T PRK04043 386 KYLGNQSALGIIR 398 (419)
T ss_pred EccCCcEEEEEEe
Confidence 6543 43455444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00049 Score=84.04 Aligned_cols=222 Identities=18% Similarity=0.109 Sum_probs=125.5
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcC---------
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP--------- 102 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fsp--------- 102 (1630)
+..+++++. +.+..||..+|+.+......+.+.+.... . +..++.++.|+.|+.||.++|+..-.+..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 455566555 67888888888877666533333222111 2 34566666788888888887765111100
Q ss_pred -------CCCeEEeecCCeEE---------EEEc--------------------C--CCCEEEEEecCCcEEEEEEcccC
Q 000346 103 -------EKKMESISVDTEVH---------LALT--------------------P--LQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 103 -------dg~~asgs~Dgtv~---------L~~s--------------------p--dg~~LaSgs~Dg~tI~IwDl~sg 144 (1630)
++..+.+..++.+. +|.. | .+..++.++.++ .+..||..++
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-~l~a~d~~tG 261 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-RVAALDLRSG 261 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCC-EEEEEECCCC
Confidence 01111222222211 1110 0 123455566677 7778887766
Q ss_pred CccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCC
Q 000346 145 GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1630)
Q Consensus 145 ~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~D 223 (1630)
+.+.... .. ....... .+..+++++.||.+..+|..+++.+..... ..... .+... .+..|++++.+
T Consensus 262 --~~~W~~~-~~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~----ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 262 --RVLWKRD-AS-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL----TAPAV--VGGYLVVGDFE 329 (377)
T ss_pred --cEEEeec-cC-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc----ccCEE--ECCEEEEEeCC
Confidence 3222222 11 1111121 456777788889999999988887766532 22221 02222 45688999999
Q ss_pred CeEEEEECCCCCceeEEEeeccCCCeE-EEEEeCCCCEEEEEECCCceEEE
Q 000346 224 GTLLAWDVSIERPSMIGIIQVGSQPIT-SVAWLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 224 GtVrVWDl~tgk~~lv~tL~gH~~~Vs-sVsfSPdG~lLaSgS~DGtIrIW 273 (1630)
|.|+++|..+++. +..+..+...+. +..+. + ..|+.++.||.|+.|
T Consensus 330 G~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSF--VARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCE--EEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 9999999999984 666665554332 22232 3 357788999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.4e-06 Score=97.62 Aligned_cols=238 Identities=12% Similarity=0.061 Sum_probs=156.7
Q ss_pred ccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECC-------CCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCC
Q 000346 14 VGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTL-------TGSRIASID-INSPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 14 vGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~-------tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DG 84 (1630)
+||.. +|+.++--.+.+-+++++. .+|++|.+. |..+..+++ |..+|.++.|-.+ .+.++++ ||
T Consensus 732 ~GH~~----~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 732 TGHQE----KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-LRSIASC--DG 804 (1034)
T ss_pred cCcHH----HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-cceeeec--cC
Confidence 44555 6777766666777888887 779999986 334666777 4499999999998 7777765 78
Q ss_pred eEEEEECCCCcE--EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee---cCCCCCe
Q 000346 85 TIRSCDFDTEQS--FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK---TDLKKPI 159 (1630)
Q Consensus 85 tIrVWDl~tge~--~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il---~gH~~~I 159 (1630)
-|++||.--++. .+.+.|.. +..+.+...-+-+.+.+..++.-..+|+++|.+.....|.... .+...-+
T Consensus 805 giHlWDPFigr~Laq~~dapk~-----~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKE-----GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred cceeecccccchhHhhhcCccc-----CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 999999866554 23343321 1223344444445566666644433999999988743443332 3445678
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEE-EECCCCCce
Q 000346 160 VNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA-WDVSIERPS 237 (1630)
Q Consensus 160 tsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrV-WDl~tgk~~ 237 (1630)
++++..+.|++++.+-.+|+|.+.|.++|+.+..+.. +-... .++ .|..+.|+....|.++.| |...++..
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdll-----qla-apsdq~L~~saldHslaVnWhaldgim- 952 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLL-----QLA-APSDQALAQSALDHSLAVNWHALDGIM- 952 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhh-----hhc-CchhHHHHhhcccceeEeeehhcCCee-
Confidence 9999999999999999999999999999998876654 22221 222 345567777777888888 87666542
Q ss_pred eEEEeeccCCCeEEEEE-eCCCCEEEEEECCCceEEEE
Q 000346 238 MIGIIQVGSQPITSVAW-LPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 238 lv~tL~gH~~~VssVsf-SPdG~lLaSgS~DGtIrIWD 274 (1630)
....+....+ ..| ..-|..+++......+.||.
T Consensus 953 -h~q~kpppep---ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 953 -HLQDKPPPEP---AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -eeccCCCCcc---hhhhhccCceeEEeccCcEEEEEe
Confidence 2222211111 111 12356677777666777774
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00035 Score=91.79 Aligned_cols=242 Identities=15% Similarity=0.117 Sum_probs=157.6
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECC----CCcE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD----TEQS 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~----tge~ 96 (1630)
..|.++.|..++.-++.+.. |.|.+-|.++......=.....|.+++|+|| +++++..+.++++.+-... ..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~D-ee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPD-EELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCC-CcEEEEEeCCcEEEEEeccccchhccc
Confidence 37899999999888888877 8888888887765433234588999999999 9999999888888664421 0000
Q ss_pred ------------EEEEcCCCCeEE------------------e---ecCCeEEEEEcCCCCEEEE-----EecCCcEEEE
Q 000346 97 ------------FVLHSPEKKMES------------------I---SVDTEVHLALTPLQPVVFF-----GFHRRMSVTV 138 (1630)
Q Consensus 97 ------------~v~fspdg~~as------------------g---s~Dgtv~L~~spdg~~LaS-----gs~Dg~tI~I 138 (1630)
.+.|-....... + -.++...+.|-.+|.++++ ..+.+ .|++
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R-kirV 226 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR-KIRV 226 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce-eEEE
Confidence 222322111111 1 2234466888889988877 33436 8999
Q ss_pred EEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCcEEEEEe----c-CCceeecCcccEEE
Q 000346 139 VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY---ADGLIRAYNIHTYAVHYTLQ----L-DNTIKLLGAGAFAF 210 (1630)
Q Consensus 139 wDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS---~DGtIrIWDl~t~~~i~tL~----~-~~~V~IsGi~sVaf 210 (1630)
||.. + ..-.+-....+--.+++|-|.|.++++-. .|+.|.+|. ++|-....+. . ...|. .++|
T Consensus 227 ~drE-g--~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve-----~L~W 297 (1265)
T KOG1920|consen 227 YDRE-G--ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVE-----ELAW 297 (1265)
T ss_pred eccc-c--hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchh-----eeee
Confidence 9987 4 22111111233345799999999988754 566798987 3343333332 2 23366 9999
Q ss_pred cCCCCEEEE---EeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC-EEEEEECCCceEEEEee
Q 000346 211 HPTLEWLFV---GDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 211 SPDg~~LaS---gS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~-lLaSgS~DGtIrIWDl~ 276 (1630)
+.++..|++ ......|++|-+.+....+.+.+.-..... +.|+|.-. .+.....+|.+.++|+.
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 999999987 444556999999988765555555433333 88998432 34444478877776665
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.4e-05 Score=88.48 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=108.4
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc----EEEEEcCCCCEEEEEEeCCCCCEEEE---EECCCeEEEEECCCC
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS----RIASIDINSPVVRMAYSPTSGHAVVA---ILEDCTIRSCDFDTE 94 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~----~i~tl~~~~~VtsVafSpd~g~lLaS---gS~DGtIrVWDl~tg 94 (1630)
.+..+..++++++||++.. ....++++.... ++........-+++.|..+ ...... .++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-cceEEEEeecCCceeeeeeccccc
Confidence 5566778899999999988 556677665433 3333333344445555544 333333 334445555554322
Q ss_pred cEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 000346 95 QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 95 e~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSg 174 (1630)
.+ ....|+......+.+++|+..|+++..|. .|++-..-..+ ..-.-..||+..|..++.-++ ..|+++
T Consensus 143 ~~--------~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~f-~IesfclGH~eFVS~isl~~~-~~LlS~ 211 (390)
T KOG3914|consen 143 RC--------EPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPATF-VIESFCLGHKEFVSTISLTDN-YLLLSG 211 (390)
T ss_pred Cc--------chhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCccc-chhhhccccHhheeeeeeccC-ceeeec
Confidence 11 11334444556788999999999999999 88887765542 222334689999999999864 458999
Q ss_pred eCCCeEEEEEcCCCcEEEEEec
Q 000346 175 YADGLIRAYNIHTYAVHYTLQL 196 (1630)
Q Consensus 175 S~DGtIrIWDl~t~~~i~tL~~ 196 (1630)
+.|+++++||+.+++++.++..
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCCCcEEEEecccCCcccccch
Confidence 9999999999999999888763
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.001 Score=76.63 Aligned_cols=228 Identities=15% Similarity=0.096 Sum_probs=125.6
Q ss_pred EEEEcCCCCEEEEEECCeEEEEECCCC--cEEEEEc----CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 26 EAAFHPNQALIAVAIGTYIIEFDTLTG--SRIASID----INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~GtI~VWDl~tg--~~i~tl~----~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.++.+.+|++||+--+..|.|-..+.. .++...+ .+-.=+.++|||| +.+||.+...|+|+++|+...++ ..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC-CcEEEEEcCCCeEEEEeccccee-EE
Confidence 356778999999988888888766543 2333333 1234688999999 99999999999999999875443 23
Q ss_pred EcCCCCeEEeecCCeEEEEEcC---C---CCEEEEEecCCcEEEEEEccc----CCccceeee---cCCCCCeEEEEEcC
Q 000346 100 HSPEKKMESISVDTEVHLALTP---L---QPVVFFGFHRRMSVTVVGTVE----GGRAPTKIK---TDLKKPIVNLACHP 166 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~sp---d---g~~LaSgs~Dg~tI~IwDl~s----g~~~~i~il---~gH~~~ItsLafSP 166 (1630)
..|.......-.+....+.+.+ + ...++.-..++ .++-+-+.. +. +....+ ..+...|.++.++|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G-~L~Sy~vs~gt~q~y-~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG-QLRSYLVSVGTNQGY-QENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccc-eeeeEEEEcccCCcc-eeeEEEEecccCCCceeEEEEcC
Confidence 3332211000001111122211 1 12355555555 555554422 11 222222 23477899999999
Q ss_pred CCCEEEEEeCCCe-----------EEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 167 RLPVLYVAYADGL-----------IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 167 dg~lLaSgS~DGt-----------IrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
..++|++|+.... +..|.+-++.+... . ..+-+...-.... +..+|.+-+.+
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-------------~-v~~~~~~~~~~~~---~~~~~~~~~~~ 220 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-------------Q-VTSSEDDITASSK---RRGLLRIPSFK 220 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE-------------E-ccccCcccccccc---ccceeecccee
Confidence 9998887773322 11221111111100 0 0011111111111 12333333322
Q ss_pred ceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 236 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 236 ~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
. ..........|..|+.||||.+||+.+.+|.|.+|++.
T Consensus 221 ~--fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 221 F--FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred e--eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 1 11111235779999999999999999999999999985
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=98.65 Aligned_cols=212 Identities=11% Similarity=0.188 Sum_probs=140.3
Q ss_pred EEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCC-EEEEEecCCc
Q 000346 56 ASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQP-VVFFGFHRRM 134 (1630)
Q Consensus 56 ~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~-~LaSgs~Dg~ 134 (1630)
..++..+++.++..+|. |.-+|.++.-|. .+-|++..-.-..|-.. .+......+....++..+ ++++.+..
T Consensus 19 lsl~v~~~~~a~si~p~-grdi~lAsr~gl-~i~dld~p~~ppr~l~h---~tpw~vad~qws~h~a~~~wiVsts~q-- 91 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPS-GRDIVLASRQGL-YIIDLDDPFTPPRWLHH---ITPWQVADVQWSPHPAKPYWIVSTSNQ-- 91 (1081)
T ss_pred eEEEecCcccceeeccc-cchhhhhhhcCe-EEEeccCCCCCceeeec---cCcchhcceecccCCCCceeEEecCcc--
Confidence 34556688999999998 888888876554 45555432110000000 001111112222233333 34443333
Q ss_pred EEEEEEcccCC-ccceeeecCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc-EEEEEec-CCceeecCcccEEE
Q 000346 135 SVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGLIRAYNIHTYA-VHYTLQL-DNTIKLLGAGAFAF 210 (1630)
Q Consensus 135 tI~IwDl~sg~-~~~i~il~gH~~~ItsLafSPdg-~lLaSgS~DGtIrIWDl~t~~-~i~tL~~-~~~V~IsGi~sVaf 210 (1630)
.-.+|++.... +.....+.+|...|+.+.|+|.. ..+++++.|..+..||+++.. .+..+.. ...-. .|.|
T Consensus 92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~as-----qVkw 166 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAAS-----QVKW 166 (1081)
T ss_pred hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCc-----eeee
Confidence 33678776543 23445668999999999999955 479999999999999999764 4444443 34444 8899
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCC-CCEEEEEECCCceEEEEeeeecC
Q 000346 211 HPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 211 SPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPd-G~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
+-....+.+.+..+.|++||.+.+.. .+..+++|...|..+.|..- -..+.+++.||+|++||......
T Consensus 167 nyk~p~vlasshg~~i~vwd~r~gs~-pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 167 NYKDPNVLASSHGNDIFVWDLRKGST-PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred cccCcchhhhccCCceEEEeccCCCc-ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 98666677777788999999998754 46788889999999998752 34677899999999999875444
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-05 Score=88.46 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=114.2
Q ss_pred CEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC---Ce-EEeecCCe-EEEEEcCCCCEEEEEecCCcEEE
Q 000346 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEK---KM-ESISVDTE-VHLALTPLQPVVFFGFHRRMSVT 137 (1630)
Q Consensus 63 ~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg---~~-asgs~Dgt-v~L~~spdg~~LaSgs~Dg~tI~ 137 (1630)
.|+.+.++.+ ..|+++..++.+......++.+.--|..+. +. ......+. -.-..+-.++-++++..|+ .+.
T Consensus 38 ~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg-~~~ 114 (319)
T KOG4714|consen 38 KLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADG-SLA 114 (319)
T ss_pred EEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCc-eEE
Confidence 4777777755 566777777777666554443311111100 00 00000000 0001112234567777777 778
Q ss_pred EEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCcEEEEEe-cCCceeecCcccEEEc
Q 000346 138 VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-----ADGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFH 211 (1630)
Q Consensus 138 IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS-----~DGtIrIWDl~t~~~i~tL~-~~~~V~IsGi~sVafS 211 (1630)
+++.+...+...++-..|.+. .+...-..++.+.++. .-+..++|+++..+....-. ....|. +++-+
T Consensus 115 v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~-----~l~~h 188 (319)
T KOG4714|consen 115 VFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT-----ALCSH 188 (319)
T ss_pred EEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccch-----hhhCC
Confidence 877765310111111112111 1112222333443332 12345566655332221111 134476 89999
Q ss_pred CC-CCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC-CCCEEEEEECCCceEEEEee
Q 000346 212 PT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 212 PD-g~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP-dG~lLaSgS~DGtIrIWDl~ 276 (1630)
|. ...+++|++||.+-+||.++... .+..+..|...++.+.||| ++..|+++++||.+-.||.+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 94 45677888999999999998742 4667889999999999999 56789999999999999987
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=86.21 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=119.9
Q ss_pred CcEEEEEcCCCCEEEEEEC------------CeEEEEECCCCcEEEEEcC--C-CCEE-EEEEeCCCCCEEEEEECCCeE
Q 000346 23 QPHEAAFHPNQALIAVAIG------------TYIIEFDTLTGSRIASIDI--N-SPVV-RMAYSPTSGHAVVAILEDCTI 86 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~------------GtI~VWDl~tg~~i~tl~~--~-~~Vt-sVafSpd~g~lLaSgS~DGtI 86 (1630)
.|.-++|||..++|++-+. ..++|||+.+|...+.+.. . ..++ -..||-| +.++|.-.. .+|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc-ceE
Confidence 5788999999999998653 2399999999998888773 2 3333 3578888 788776655 456
Q ss_pred EEEECCCCcE------------EEEEcC-----------------------------------------------CCCeE
Q 000346 87 RSCDFDTEQS------------FVLHSP-----------------------------------------------EKKME 107 (1630)
Q Consensus 87 rVWDl~tge~------------~v~fsp-----------------------------------------------dg~~a 107 (1630)
.||+...-.. ...|+| .|.++
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 6665433211 122222 22221
Q ss_pred EeecC---------------------------------CeEEEEEcCCCCEEE--EEecCCcEEEEEEcccCCccceeee
Q 000346 108 SISVD---------------------------------TEVHLALTPLQPVVF--FGFHRRMSVTVVGTVEGGRAPTKIK 152 (1630)
Q Consensus 108 sgs~D---------------------------------gtv~L~~spdg~~La--Sgs~Dg~tI~IwDl~sg~~~~i~il 152 (1630)
+.-.| ..+...|-|.|+.++ +|.....++.+|.+.+.......+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 11000 004445567776543 4444455788888873321332222
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeC
Q 000346 153 TDLKKPIVNLACHPRLPVLYVAY---ADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1630)
Q Consensus 153 ~gH~~~ItsLafSPdg~lLaSgS---~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~ 222 (1630)
.-.....+.+.|+|.|++++++. ..|.+..+|+....+..+-.. ....+ .+.|.|.|+|+++++.
T Consensus 489 ~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at-----~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 489 ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAAT-----EVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccc-----cceECCCCCEEEEeee
Confidence 22246678899999999988765 568899999875333322221 22233 7899999999999885
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0015 Score=73.97 Aligned_cols=213 Identities=15% Similarity=0.078 Sum_probs=131.2
Q ss_pred CeEEEEECCCCcEEEEEcCC---CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCe-EEeecCCeEEE
Q 000346 42 TYIIEFDTLTGSRIASIDIN---SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM-ESISVDTEVHL 117 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~~~---~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~-asgs~Dgtv~L 117 (1630)
|+|..||..+|+.+...... ....+... ++ +..+++++.++.|+.||..+|+..-.+...+.. ..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--------- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAV-PD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--------- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEE-EE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---------
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEE-Ee-CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---------
Confidence 67999999999998888742 23332223 23 566777789999999999999875555443332 11
Q ss_pred EEcCCCCEEEEEecCCcEEEEEEcccCCccceee-ecCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEE
Q 000346 118 ALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDL---KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 193 (1630)
Q Consensus 118 ~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~i-l~gH---~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~t 193 (1630)
....+..+++++.++ .+..+|..++ ..... .... ...........++..++++..++.|..+|.++|+.+..
T Consensus 72 -~~~~~~~v~v~~~~~-~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 72 -PVVDGGRVYVGTSDG-SLYALDAKTG--KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp -EEEETTEEEEEETTS-EEEEEETTTS--CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred -eeeccccccccccee-eeEecccCCc--ceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 112334556666677 8899998888 33333 2211 11122223333477888888899999999999999888
Q ss_pred Eec-CCcee-----ecCc-ccEEEcCCCCEEEEEeCCCe-EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEE
Q 000346 194 LQL-DNTIK-----LLGA-GAFAFHPTLEWLFVGDRRGT-LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 194 L~~-~~~V~-----IsGi-~sVafSPDg~~LaSgS~DGt-VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS 265 (1630)
... ..... +... ..+.+. ++ .++.++.++. +.+ |+.+++. +-... ...+.. ....++..++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~--~w~~~--~~~~~~-~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEK--LWSKP--ISGIYS-LPSVDGGTLYVTS 219 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEE--EEEEC--SS-ECE-CEECCCTEEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCE--EEEec--CCCccC-CceeeCCEEEEEe
Confidence 875 21110 0000 122222 44 6777777775 555 9999874 22222 222222 1456777888888
Q ss_pred CCCceEEEEeee
Q 000346 266 RDGSLQVWKTRV 277 (1630)
Q Consensus 266 ~DGtIrIWDl~~ 277 (1630)
.++.|..||..+
T Consensus 220 ~~~~l~~~d~~t 231 (238)
T PF13360_consen 220 SDGRLYALDLKT 231 (238)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCEEEEEECCC
Confidence 999999999864
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0097 Score=68.45 Aligned_cols=217 Identities=20% Similarity=0.174 Sum_probs=131.9
Q ss_pred EEEEcC-CCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEe-CCCCCEEEEEECCCeEEEEECCCCcEEEEEc-
Q 000346 26 EAAFHP-NQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYS-PTSGHAVVAILEDCTIRSCDFDTEQSFVLHS- 101 (1630)
Q Consensus 26 ~LaFSP-dG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafS-pd~g~lLaSgS~DGtIrVWDl~tge~~v~fs- 101 (1630)
+++|.+ ++.++++-.. +.|..|+..+++... +.... ...+++. ++ +.++++ .. +.+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~-~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVA-DS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEE-ET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEE-Ec-CceEEEecCCCcEEEEeec
Confidence 678998 5555555444 779999999876533 33223 7788888 55 555544 44 445666998886622222
Q ss_pred CCCCeEEeecCCeEEEEEcCCCCEEEEEecC--------CcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEE-
Q 000346 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHR--------RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY- 172 (1630)
Q Consensus 102 pdg~~asgs~Dgtv~L~~spdg~~LaSgs~D--------g~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLa- 172 (1630)
+.+.. .....-.+.+.++|.+.++.... + .|..++.. + +...... .-.....++|+|+++.|+
T Consensus 79 ~~~~~---~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g-~v~~~~~~-~--~~~~~~~-~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 79 PDGGV---PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG-SVYRIDPD-G--KVTVVAD-GLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp ETTCS---CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE-EEEEEETT-S--EEEEEEE-EESSEEEEEEETTSSEEEE
T ss_pred cCCCc---ccCCCceEEEcCCCCEEEEecCCCcccccccc-ceEEECCC-C--eEEEEec-CcccccceEECCcchheee
Confidence 11110 00011345677777755554432 3 45666655 3 3333322 244568999999999776
Q ss_pred EEeCCCeEEEEEcCCCcE----EEEEe---c-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec
Q 000346 173 VAYADGLIRAYNIHTYAV----HYTLQ---L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 244 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~----i~tL~---~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g 244 (1630)
+-+..+.|..+|+..... ...+. . .+... .++++.+|++.++....+.|.++|.. ++. +..+..
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD-----G~~vD~~G~l~va~~~~~~I~~~~p~-G~~--~~~i~~ 222 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD-----GLAVDSDGNLWVADWGGGRIVVFDPD-GKL--LREIEL 222 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE-----EEEEBTTS-EEEEEETTTEEEEEETT-SCE--EEEEE-
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCC-----cceEcCCCCEEEEEcCCCEEEEECCC-ccE--EEEEcC
Confidence 455778899999863221 22222 2 22355 79999999988888889999999988 763 555655
Q ss_pred cCCCeEEEEEe-CCCCEEEE
Q 000346 245 GSQPITSVAWL-PMLRLLVT 263 (1630)
Q Consensus 245 H~~~VssVsfS-PdG~lLaS 263 (1630)
....+++++|. ++.+.|..
T Consensus 223 p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEE
Confidence 55689999994 56554433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.5e-05 Score=93.61 Aligned_cols=239 Identities=14% Similarity=0.162 Sum_probs=144.6
Q ss_pred CCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 16 RGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 16 rg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
+..+.|.++.+++|||..-.|+.|-. |.+.+|...+.+...... |..+|..+.||++ |..++++..-|.|.+|.++.
T Consensus 54 r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 54 RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEeee
Confidence 44557789999999999989999988 889999998776655444 4499999999999 99999999999999998762
Q ss_pred -CcE-----------------EEEEcCCCCe------EEeecCCe----------------EEEEEcCCCCEEEEEecCC
Q 000346 94 -EQS-----------------FVLHSPEKKM------ESISVDTE----------------VHLALTPLQPVVFFGFHRR 133 (1630)
Q Consensus 94 -ge~-----------------~v~fspdg~~------asgs~Dgt----------------v~L~~spdg~~LaSgs~Dg 133 (1630)
|+. |...++++.. ++.+.|.. ..-.-.++|..++.+..+|
T Consensus 133 ~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~G 212 (1416)
T KOG3617|consen 133 IGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSG 212 (1416)
T ss_pred ccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCc
Confidence 221 4455555321 11111111 1111256778888888888
Q ss_pred cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CC------------------------
Q 000346 134 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH-TY------------------------ 188 (1630)
Q Consensus 134 ~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~-t~------------------------ 188 (1630)
+|+..|-. + .+..+....+. ..+-|++....+.+--.+-++.++-.. +|
T Consensus 213 -tVyyvdq~-g--~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~s 286 (1416)
T KOG3617|consen 213 -TVYYVDQN-G--RQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACS 286 (1416)
T ss_pred -eEEEEcCC-C--cEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccc
Confidence 77766632 2 33333321111 122333322222222222222222111 00
Q ss_pred --------cEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEE-ECCCC---Cc----eeEEEeeccCCCeEEE
Q 000346 189 --------AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW-DVSIE---RP----SMIGIIQVGSQPITSV 252 (1630)
Q Consensus 189 --------~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVW-Dl~tg---k~----~lv~tL~gH~~~VssV 252 (1630)
...+.+..+..+ .|++|+..+..|+.|...|.+.+| |+..+ .+ +.+.....-.+.|+.+
T Consensus 287 EssGvLr~~eKyg~e~ge~~-----~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i 361 (1416)
T KOG3617|consen 287 ESSGVLRKSEKYGLELGEGI-----LCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLI 361 (1416)
T ss_pred cccccccCCcchhhhcCCce-----EEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEE
Confidence 011111113334 499999999999999999999999 44431 11 1222233344789999
Q ss_pred EEeCCCCEEEEEEC
Q 000346 253 AWLPMLRLLVTLCR 266 (1630)
Q Consensus 253 sfSPdG~lLaSgS~ 266 (1630)
.|.|--..++..+.
T Consensus 362 ~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 362 RWGPIKSTAAVNTE 375 (1416)
T ss_pred Eeccccchhhhhhh
Confidence 99996665555443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0016 Score=79.54 Aligned_cols=227 Identities=16% Similarity=0.150 Sum_probs=134.1
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEE-EEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEc--------C
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDINSPVV-RMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS--------P 102 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~Vt-sVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fs--------p 102 (1630)
+..+++++. +.|..+|..+|+.+........+. .+.. + +..++.++.|+.+..+|.++|+..-.+. |
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 556677766 789999999999988777443332 2222 3 5677788889999999998887611110 0
Q ss_pred ---CCCeEEeecCCeEEEEEcCC-------------------------CCEEEEEecCCcEEEEEEcccCCccceeeecC
Q 000346 103 ---EKKMESISVDTEVHLALTPL-------------------------QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1630)
Q Consensus 103 ---dg~~asgs~Dgtv~L~~spd-------------------------g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~g 154 (1630)
++..+.+..++.+..+...+ +..++.+..++ .+..+|..++. .......
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g-~v~ald~~tG~--~~W~~~~ 218 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG-KLVALDLQTGQ--PLWEQRV 218 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCC-EEEEEEccCCC--Eeeeecc
Confidence 11112222233222211111 12456667777 78888887773 2221110
Q ss_pred -CC---C---CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCe
Q 000346 155 -LK---K---PIVNLACHP--RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1630)
Q Consensus 155 -H~---~---~ItsLafSP--dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGt 225 (1630)
.. . .+..+.-+| .+..+++++.+|.++.||..+++.+........ . ... .++..+++++.||.
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~-----~p~--~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-Q-----GPA--VDDNRLYVTDADGV 290 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-c-----Cce--EeCCEEEEECCCCe
Confidence 00 0 000011111 345777888899999999999988776653211 1 222 24567888889999
Q ss_pred EEEEECCCCCceeEEEeec-cCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 226 LLAWDVSIERPSMIGIIQV-GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~g-H~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+..+|..+++. +-.... ......+... .+..+++++.||.|++||..+
T Consensus 291 l~~~d~~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 291 VVALDRRSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred EEEEECCCCcE--EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 99999998874 322211 1111222222 356888999999999998653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=82.81 Aligned_cols=71 Identities=27% Similarity=0.500 Sum_probs=57.8
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCcEEE-EEe-cCCceeecCcccEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 000346 158 PIVNLACHPRL-PVLYVAYADGLIRAYNIHTYAVHY-TLQ-LDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 158 ~ItsLafSPdg-~lLaSgS~DGtIrIWDl~t~~~i~-tL~-~~~~V~IsGi~sVafSP-Dg~~LaSgS~DGtVrVWDl~t 233 (1630)
.|.+++-||.. ..+++|+.||.+.+||.+...... .+. ++..++ .+.||| ++..|++++.||.+..||-.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~-----eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW-----EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh-----heeccCCCchheeEecCCCcEEEEcCCC
Confidence 38999999954 567888899999999999773322 222 378888 999999 778999999999999999874
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00083 Score=76.12 Aligned_cols=228 Identities=13% Similarity=0.008 Sum_probs=139.5
Q ss_pred EEEEcCC-----CCEEEEEEC-CeEEEEECCCCcEEEEE-cCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-
Q 000346 26 EAAFHPN-----QALIAVAIG-TYIIEFDTLTGSRIASI-DIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS- 96 (1630)
Q Consensus 26 ~LaFSPd-----G~lLasgs~-GtI~VWDl~tg~~i~tl-~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~- 96 (1630)
.+.|-|. -.+||.|+. |...+|...+.+....+ ..+ ..|+-+.=..+..--+..++.|.++++.+++.+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4556552 246788877 99999999876643333 222 33322221122133455667888888888755432
Q ss_pred EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee-cCCCCCeEEEEEcCCCCEEEEEe
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-TDLKKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 97 ~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-~gH~~~ItsLafSPdg~lLaSgS 175 (1630)
...+.++ -..-++..++++.+.++.++.. .|..|.+.........+. ...+..-.+..|+.....+|+++
T Consensus 152 ~~~h~~~--------~~~ns~~~snd~~~~~~Vgds~-~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 152 FAVHNQN--------LTQNSLHYSNDPSWGSSVGDSR-RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred ceeeccc--------cceeeeEEcCCCceEEEecCCC-cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence 1112211 0124456778888888887777 777777765431222322 22344456788999999999999
Q ss_pred CCCeEEEEEcCCCcEEEEEe-----c-CCceeecCcccEEEcCCC--CEEEEEeCCCeEEEEECCCCCc-eeEEE----e
Q 000346 176 ADGLIRAYNIHTYAVHYTLQ-----L-DNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLLAWDVSIERP-SMIGI----I 242 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~-----~-~~~V~IsGi~sVafSPDg--~~LaSgS~DGtVrVWDl~tgk~-~lv~t----L 242 (1630)
.||++.|||++......... + .+.++ .+.|++-| .+|+..-.-+.+.+.|++++.. +++.. .
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R-----~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFR-----VCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCCCceE-----EEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence 99999999999654322221 2 67777 88999855 3566666678899999998753 12211 1
Q ss_pred eccC-CCeEEEEEeCCCCEEEEEECC
Q 000346 243 QVGS-QPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 243 ~gH~-~~VssVsfSPdG~lLaSgS~D 267 (1630)
..|. ..|....|+.++..+.+.+++
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccccccccccccccCCCcccccccch
Confidence 2232 337777777777666665544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=86.99 Aligned_cols=158 Identities=14% Similarity=0.137 Sum_probs=102.1
Q ss_pred CEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCe--EEeecCCeEEEEEcCCCCEEEEE--ecCCcEEEE
Q 000346 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM--ESISVDTEVHLALTPLQPVVFFG--FHRRMSVTV 138 (1630)
Q Consensus 63 ~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~--asgs~Dgtv~L~~spdg~~LaSg--s~Dg~tI~I 138 (1630)
.+..+..++. +.+++++..+....++++..... .-+. ..........+.+..+...+..+ ..|...+.+
T Consensus 64 a~~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 64 APALVLTSDS-GRLVAVATSSKQRAVFDYRENPK------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cccccccCCC-ceEEEEEeCCCceEEEEEecCCC------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 3455566677 89999998888877887754432 0000 11111111122222222222222 222224555
Q ss_pred EEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEe--cCCceeecCcccEEEcCCCCE
Q 000346 139 VGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ--LDNTIKLLGAGAFAFHPTLEW 216 (1630)
Q Consensus 139 wDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~--~~~~V~IsGi~sVafSPDg~~ 216 (1630)
|...++ +.....||-..++.++|+||+++++++..|..|||-....-..+..+- |...|. .++.-++ ..
T Consensus 137 ~s~~~~---~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS-----~isl~~~-~~ 207 (390)
T KOG3914|consen 137 LSADSG---RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS-----TISLTDN-YL 207 (390)
T ss_pred eccccc---CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee-----eeeeccC-ce
Confidence 554443 344556899999999999999999999999999998776655555554 366676 7777765 45
Q ss_pred EEEEeCCCeEEEEECCCCCc
Q 000346 217 LFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 217 LaSgS~DGtVrVWDl~tgk~ 236 (1630)
|++|+.|++|++||+.++++
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeecCCCCcEEEEecccCCc
Confidence 89999999999999999985
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.3e-05 Score=60.82 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=35.5
Q ss_pred eEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 238 MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 238 lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
++.++.+|...|++++|+|++.+|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00083 Score=84.75 Aligned_cols=233 Identities=13% Similarity=0.034 Sum_probs=126.6
Q ss_pred EEEEEcCCCCEEEEEEC-----CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 25 HEAAFHPNQALIAVAIG-----TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-----GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
+-.+|||..+++++++- |.|.||- ++|++-....-.-.+++++|+|. .-.|+.|-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChH-HHHHhhccccceeEEEecCCceeeee
Confidence 44689999999998874 4488774 45665443332244677999998 88888898999999999876654100
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcccee-----------------------------
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK----------------------------- 150 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~----------------------------- 150 (1630)
.. .+.-....+-|+++|..++++..-+ .|.+|.....+.-...
T Consensus 97 ~~-------th~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 97 VE-------THPAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred cc-------CCCCCceeEEecCCCCeEEEcCCCc-eeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 00 0011122334444444444444444 4444443311000000
Q ss_pred --eecCCCCCeE------------EE--EEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCC
Q 000346 151 --IKTDLKKPIV------------NL--ACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 151 --il~gH~~~It------------sL--afSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg 214 (1630)
...+....+- +. .=.|+|..++.+..+|+|+-.| ..+++......+..| .+-|.+-.
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~v------QmLf~~~~ 241 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSEV------QMLFMGYC 241 (1416)
T ss_pred hhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccchH------HHHHhccc
Confidence 0011111110 00 1135677888888899988877 345555555444444 34444433
Q ss_pred CEEEEEeCCCeEEEEEC-CCCCce-------------------------e-----EEEeeccCCCeEEEEEeCCCCEEEE
Q 000346 215 EWLFVGDRRGTLLAWDV-SIERPS-------------------------M-----IGIIQVGSQPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 215 ~~LaSgS~DGtVrVWDl-~tgk~~-------------------------l-----v~tL~gH~~~VssVsfSPdG~lLaS 263 (1630)
.-+.+-..+-++.++-+ .+|... + ...+ .....++|++++..+..++.
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEEeccceEEEe
Confidence 33333322222222211 111000 0 0000 12357899999999999999
Q ss_pred EECCCceEEEEe
Q 000346 264 LCRDGSLQVWKT 275 (1630)
Q Consensus 264 gS~DGtIrIWDl 275 (1630)
|...|.+.+|.-
T Consensus 321 gt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 321 GTKEGNVTIWLD 332 (1416)
T ss_pred cccCCcEEEeee
Confidence 999999999953
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7e-05 Score=86.90 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=110.6
Q ss_pred EEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----cEEEEEecCCcee
Q 000346 127 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-----AVHYTLQLDNTIK 201 (1630)
Q Consensus 127 aSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~-----~~i~tL~~~~~V~ 201 (1630)
++.+.+. .|-+.|+.+++.+... .++.|.++.|+-.++++..|+.+|.|..+|++.. .+.+.+.|+..|+
T Consensus 228 fs~G~sq-qv~L~nvetg~~qsf~----sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQ-QVLLTNVETGHQQSFQ----SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVT 302 (425)
T ss_pred ecccccc-eeEEEEeecccccccc----cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchh
Confidence 5556666 7888999988622222 4678999999998999999999999999999854 5677777888887
Q ss_pred ecCcccEEEcC-CCCEEEEEeCCCeEEEEECCCCCc-eeEEEeeccCCCeEEEEE--eCCCCEEEEEECCCceEEEEee
Q 000346 202 LLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERP-SMIGIIQVGSQPITSVAW--LPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 202 IsGi~sVafSP-Dg~~LaSgS~DGtVrVWDl~tgk~-~lv~tL~gH~~~VssVsf--SPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++..-. ++++|++.+.+|+|++||++-.++ .-+.+..||.+.-.-+-+ ++....|++++.|-..|||.++
T Consensus 303 -----slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 303 -----SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred -----hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 876665 778999999999999999986542 127788899765544444 4567789999999999999987
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0042 Score=78.50 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCC-----------CC-EEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCC---CCCEEEEEECC
Q 000346 21 PLQPHEAAFHPN-----------QA-LIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPT---SGHAVVAILED 83 (1630)
Q Consensus 21 p~rV~~LaFSPd-----------G~-lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd---~g~lLaSgS~D 83 (1630)
+..|+.+.|.|- .. +||++.. |+|.+||...+..+..+.++ .+|..++|-+. ....|++....
T Consensus 55 ~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 55 QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGS 134 (1062)
T ss_pred ccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCC
Confidence 357999999762 12 4555555 88999999999988888876 89999999753 22577777778
Q ss_pred CeEEEEECCCCcE------------EEEEcCCCCe---EEeecCCe----------------------------------
Q 000346 84 CTIRSCDFDTEQS------------FVLHSPEKKM---ESISVDTE---------------------------------- 114 (1630)
Q Consensus 84 GtIrVWDl~tge~------------~v~fspdg~~---asgs~Dgt---------------------------------- 114 (1630)
.+|.+|+..+|+. |+.+.|-... +.++ .|.
T Consensus 135 s~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere 213 (1062)
T KOG1912|consen 135 STLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERE 213 (1062)
T ss_pred cEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhh
Confidence 8999999999987 3333332221 1111 111
Q ss_pred --------------------EEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCC--EEE
Q 000346 115 --------------------VHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP--VLY 172 (1630)
Q Consensus 115 --------------------v~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~--lLa 172 (1630)
..+.++|.-..++...-.+ .+.++|++-. .+.....-..+.+.-+.|-|+++ .|+
T Consensus 214 ~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr-ellv~dle~~--~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 214 TATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR-ELLVFDLEYE--CCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc-ceEEEcchhh--ceeEEEEeccCCcceeEeccCCCcceEE
Confidence 1222344433333334444 5677777665 55555554566667778888665 688
Q ss_pred EEeCCCeEEEEEcC
Q 000346 173 VAYADGLIRAYNIH 186 (1630)
Q Consensus 173 SgS~DGtIrIWDl~ 186 (1630)
+...||.+.+|-.+
T Consensus 291 clH~nG~ltirvrk 304 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRK 304 (1062)
T ss_pred EEecCCeEEEEEee
Confidence 88899999999654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0006 Score=87.14 Aligned_cols=183 Identities=14% Similarity=0.152 Sum_probs=126.7
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeec
Q 000346 74 GHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1630)
Q Consensus 74 g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~ 153 (1630)
+..++.|+.-..+..+|+++.+..-..+ .+..+ +. ..-.++..+++|+..| +|.+-|..+- +.++++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-------v~a~~-v~-imR~Nnr~lf~G~t~G-~V~LrD~~s~--~~iht~~ 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTN-------VSASG-VT-IMRYNNRNLFCGDTRG-TVFLRDPNSF--ETIHTFD 214 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeee-------ccCCc-eE-EEEecCcEEEeecccc-eEEeecCCcC--ceeeeee
Confidence 4455555555566666666554311111 11112 22 2234567888899999 9999999888 8899999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCC-CCEEEEEeCC
Q 000346 154 DLKKPIVNLACHPRLPVLYVAY---------ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT-LEWLFVGDRR 223 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~lLaSgS---------~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPD-g~~LaSgS~D 223 (1630)
.|++.|..+.. .|++|++|+ .|..|+|||++..+.+.-+.-...-. -+.|+|. ...+++++..
T Consensus 215 aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~-----flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 215 AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ-----FLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch-----hhhhcccccceEEEEecc
Confidence 99999987666 588888887 46679999999887765555422223 6788984 3568888889
Q ss_pred CeEEEEECC---CCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 224 GTLLAWDVS---IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 224 GtVrVWDl~---tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
|...+-|.. +-.. -+..+....+.+..++++++|+.++.|..+|.|.+|.-+
T Consensus 288 Gq~q~vd~~~lsNP~~-~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPA-GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cceeeccccccCCCcc-ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 999998833 3211 122233334569999999999999999999999999833
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.3e-05 Score=98.31 Aligned_cols=208 Identities=14% Similarity=0.112 Sum_probs=136.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEE-CCC-eEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAIL-EDC-TIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS-~DG-tIrVWDl~tge~~v 98 (1630)
..+|++|+-+.++|++|+. |.|++|++.+|........| +.|+-+.-+.+ |..+++.+ ... -..+|+...-
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d-gs~~Ltsss~S~PlsaLW~~~s~---- 1177 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD-GSTQLTSSSSSSPLSALWDASST---- 1177 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC-cceeeeeccccCchHHHhccccc----
Confidence 6799999999999999999 99999999999999888855 99999999999 66655544 333 4678987431
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCC---CCCeEEEEEcCCCCEEEEEe
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDL---KKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH---~~~ItsLafSPdg~lLaSgS 175 (1630)
+.+. -+-..|..+.+..+.... +.|+... ...+||+++++ .+...+.+. +..-.+..|+|+..+++
T Consensus 1178 -~~~~---Hsf~ed~~vkFsn~~q~r--~~gt~~d-~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1178 -GGPR---HSFDEDKAVKFSNSLQFR--ALGTEAD-DALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred -cCcc---ccccccceeehhhhHHHH--Hhccccc-ceEEEecccCc-HHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 1111 001122223322222222 2222223 56899999985 443333221 22236788999888876
Q ss_pred CCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEE
Q 000346 176 ADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAW 254 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsf 254 (1630)
.|| .+||.+..+.++.|.. ...+ .=.|||.|.-++.-+ .|||+++.+. ++.... -.-..+.|
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~ft~~~------~G~FHP~g~eVIINS-----EIwD~RTF~l--Lh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYG------GGGFHPSGNEVIINS-----EIWDMRTFKL--LHSVPS--LDQCAVTF 1309 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhheecc------cccccCCCceEEeec-----hhhhhHHHHH--HhcCcc--ccceEEEe
Confidence 455 4899998888877765 3222 447899999888765 6899998763 433322 12356788
Q ss_pred eCCCCEEEE
Q 000346 255 LPMLRLLVT 263 (1630)
Q Consensus 255 SPdG~lLaS 263 (1630)
+..|..+..
T Consensus 1310 NstG~VmYa 1318 (1516)
T KOG1832|consen 1310 NSTGDVMYA 1318 (1516)
T ss_pred ccCccchhh
Confidence 888876643
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.1e-05 Score=91.16 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=134.8
Q ss_pred EEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc-------EEEEEcCCCCeEEeecCCeEEEEEcCCCCEEE
Q 000346 56 ASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-------SFVLHSPEKKMESISVDTEVHLALTPLQPVVF 127 (1630)
Q Consensus 56 ~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge-------~~v~fspdg~~asgs~Dgtv~L~~spdg~~La 127 (1630)
..+.+| ..|+.+.-..+ .+.+++++.|.+|++|.++..- |..++.. +......+-+..+...++
T Consensus 729 ~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-------Hkk~i~~igfL~~lr~i~ 800 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-------HKKPIHDIGFLADLRSIA 800 (1034)
T ss_pred ecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhh-------ccCcccceeeeeccceee
Confidence 344455 77888877666 7899999999999999985431 1222221 111222233444444444
Q ss_pred EEecCCcEEEEEEcccCCcccee-eec-CCCCCeEEEEEcC--CCCE-EEEEeCCCeEEEEEcCCCcEEEEEec------
Q 000346 128 FGFHRRMSVTVVGTVEGGRAPTK-IKT-DLKKPIVNLACHP--RLPV-LYVAYADGLIRAYNIHTYAVHYTLQL------ 196 (1630)
Q Consensus 128 Sgs~Dg~tI~IwDl~sg~~~~i~-il~-gH~~~ItsLafSP--dg~l-LaSgS~DGtIrIWDl~t~~~i~tL~~------ 196 (1630)
+ .|+ .|.+||...+ .... ... ...+.+..+..-+ +... ++.++...+|+++|.+...-...++.
T Consensus 801 S--cD~-giHlWDPFig--r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 801 S--CDG-GIHLWDPFIG--RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred e--ccC-cceeeccccc--chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 4 355 7899998766 3322 221 1123334444434 3333 44447889999999998766655552
Q ss_pred CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEE-EEe
Q 000346 197 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQV-WKT 275 (1630)
Q Consensus 197 ~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrI-WDl 275 (1630)
...++ +++..+.|++++++-.+|.|.+.|.++|+. +..++........++ .|..+.++....|.++.| |..
T Consensus 876 na~~R-----~iaVa~~GN~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqla-apsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 876 NALTR-----AIAVADKGNKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred chhee-----EEEeccCcchhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence 34456 899999999999999999999999999983 554444333333333 356678888888999988 875
Q ss_pred e---eecCCCCCCCccccc
Q 000346 276 R---VIINPNRPPMQANFF 291 (1630)
Q Consensus 276 ~---~~~~pnk~~~~a~fF 291 (1630)
- .....+.+|..+.|.
T Consensus 948 ldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred cCCeeeeccCCCCcchhhh
Confidence 4 222333345555553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.014 Score=67.16 Aligned_cols=192 Identities=16% Similarity=0.103 Sum_probs=120.1
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEc-CCCCEEEEEecCCcEEEEEEcccC
Q 000346 66 RMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALT-PLQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 66 sVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~s-pdg~~LaSgs~Dg~tI~IwDl~sg 144 (1630)
++.|.+.++.++++--..+.|+.|+..+++..+...+ ....+... ++ ..++.+...+ +.++|..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----------~~~G~~~~~~~-g~l~v~~~~~--~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP----------GPNGMAFDRPD-GRLYVADSGG--IAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS----------SEEEEEEECTT-SEEEEEETTC--EEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC----------CCceEEEEccC-CEEEEEEcCc--eEEEecCCC
Confidence 5789985377777776789999999888765432221 13444555 44 4455555544 355587776
Q ss_pred Cccceeeec--C-CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCC
Q 000346 145 GRAPTKIKT--D-LKKPIVNLACHPRLPVLYVAYAD--------GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPT 213 (1630)
Q Consensus 145 ~~~~i~il~--g-H~~~ItsLafSPdg~lLaSgS~D--------GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPD 213 (1630)
....+.... . .....+.++++|+|++.++.... |.|..++.. ++.......-...+ .++|+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN-----Gi~~s~d 144 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN-----GIAFSPD 144 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-----EEEEETT
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc-----ceEECCc
Confidence 312222221 1 34567899999999977766533 557777766 55554444444456 8999999
Q ss_pred CCEEEE-EeCCCeEEEEECCCCCc-----eeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 214 LEWLFV-GDRRGTLLAWDVSIERP-----SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 214 g~~LaS-gS~DGtVrVWDl~tgk~-----~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
++.|++ -+..+.|..+++..... .....+.......-.+++..+|++.++....+.|.+++..
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 998765 45678888888864321 1111222222347789999999998888888899888753
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=74.32 Aligned_cols=150 Identities=7% Similarity=-0.012 Sum_probs=98.7
Q ss_pred CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCcee
Q 000346 124 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPR-LPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIK 201 (1630)
Q Consensus 124 ~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPd-g~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~ 201 (1630)
.+|+.|+..+ ...+|...+.. ...+....|...|+-+.=.-+ ..-+..++.|.++++++++.+.....+.. .-.++
T Consensus 85 ~~la~gG~~g-~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASG-QFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cEEEeccccc-eeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3566666666 77777776542 222222223322221110011 12456678899999998875544443332 23466
Q ss_pred ecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEE-EeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 202 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIG-IIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 202 IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~-tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
++.+++|++++++.++...|..|.+......++. .....+..-.+.+|+.....+|+++.||++.|||++....
T Consensus 163 -----s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 163 -----SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred -----eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 9999999999999999999999988875443444 2333345557889999999999999999999999985443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=80.20 Aligned_cols=200 Identities=17% Similarity=0.165 Sum_probs=136.5
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcC---CCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE--
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDI---NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~---~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-- 96 (1630)
.|.-+.|+...+.|-++.. |-|.||-+-.|.....+-. .+-|.+++|+.+ |+.|...-.||.|.|=.++.++.
T Consensus 73 sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNRIwg 151 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNRIWG 151 (1189)
T ss_pred eEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccceecc
Confidence 8999999999888888777 7799999998877655542 277999999999 99999999999886655544333
Q ss_pred ---------EEEEcCCCCe-EEeecCCeEE----------------------------------EEE-------cCCCCE
Q 000346 97 ---------FVLHSPEKKM-ESISVDTEVH----------------------------------LAL-------TPLQPV 125 (1630)
Q Consensus 97 ---------~v~fspdg~~-asgs~Dgtv~----------------------------------L~~-------spdg~~ 125 (1630)
.+.|++|.+. ..+-..+.++ -|+ -|+.+.
T Consensus 152 KeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 152 KELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred hhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence 4556665443 1111111111 111 356677
Q ss_pred EEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCCcEEEEEec
Q 000346 126 VFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD---------GLIRAYNIHTYAVHYTLQL 196 (1630)
Q Consensus 126 LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D---------GtIrIWDl~t~~~i~tL~~ 196 (1630)
++.+..+| .+.+..-.+.. .++..-. .-.+....|+++|..|++++.| +.|.+|. .-|..+.+++.
T Consensus 232 lavcy~nG-r~QiMR~eND~-~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv 306 (1189)
T KOG2041|consen 232 LAVCYANG-RMQIMRSENDP-EPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV 306 (1189)
T ss_pred EEEEEcCc-eehhhhhcCCC-CCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence 88888777 55555444332 3333323 3578889999999999999843 2455554 34677778876
Q ss_pred -CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000346 197 -DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1630)
Q Consensus 197 -~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg 234 (1630)
+..|+ .++|-..|-.++.+- |+.|.+=+++..
T Consensus 307 pg~~It-----~lsWEg~gLriA~Av-dsfiyfanIRP~ 339 (1189)
T KOG2041|consen 307 PGSCIT-----GLSWEGTGLRIAIAV-DSFIYFANIRPE 339 (1189)
T ss_pred CCceee-----eeEEcCCceEEEEEe-cceEEEEeeccc
Confidence 67777 899988887776664 777777676643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.007 Score=68.42 Aligned_cols=187 Identities=16% Similarity=0.110 Sum_probs=114.4
Q ss_pred CCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCCCCeEEe
Q 000346 32 NQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH-SPEKKMESI 109 (1630)
Q Consensus 32 dG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f-spdg~~asg 109 (1630)
++..+++++. +.|..||..+|+.+..+....++...... . +..++.++.|+.|+.+|..+|+..-.. .........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV-D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE-E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee-c-ccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 5666777666 78999999999998888744322221222 2 456677778889999999999873332 100000000
Q ss_pred ecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCC----------e-EEEEEcCCCCEEEEEeCCC
Q 000346 110 SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKP----------I-VNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 110 s~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~----------I-tsLafSPdg~lLaSgS~DG 178 (1630)
... ..... .+..++.+..++ .|..+|..+| +.+.....+... + ..+.++ ++ .++.++.++
T Consensus 113 ~~~--~~~~~--~~~~~~~~~~~g-~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g 183 (238)
T PF13360_consen 113 RSS--SSPAV--DGDRLYVGTSSG-KLVALDPKTG--KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG 183 (238)
T ss_dssp B----SEEEE--ETTEEEEEETCS-EEEEEETTTT--EEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred ccc--cCceE--ecCEEEEEeccC-cEEEEecCCC--cEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence 000 11111 266777777778 8999999988 444444333211 1 222232 44 777777777
Q ss_pred eEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~ 236 (1630)
.+..+|+.+++.+.... ...+. .....++..|++++.++.|.+||+++++.
T Consensus 184 ~~~~~d~~tg~~~w~~~-~~~~~------~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP-ISGIY------SLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEEETTTTEEEEEEC-SS-EC------ECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEec-CCCcc------CCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 54444999998765333 33332 22456778888888999999999999973
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00016 Score=58.83 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=36.0
Q ss_pred cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000346 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN 184 (1630)
Q Consensus 147 ~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWD 184 (1630)
+++.++.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00073 Score=77.51 Aligned_cols=210 Identities=10% Similarity=0.149 Sum_probs=131.6
Q ss_pred CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCc-E----EEEEcCCC-Ce-EEeec---CCeEE-EEEcCCC-CEEEEE
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ-S----FVLHSPEK-KM-ESISV---DTEVH-LALTPLQ-PVVFFG 129 (1630)
Q Consensus 62 ~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge-~----~v~fspdg-~~-asgs~---Dgtv~-L~~spdg-~~LaSg 129 (1630)
..|+++.|... |.++++|...|.|.+|.-+... | ...|.... .. ..-+. ..... -|+.+.+ ..++..
T Consensus 27 d~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 67999999998 9999999999999999754332 1 11111100 00 00000 01111 2444444 456667
Q ss_pred ecCCcEEEEEEcccCCcc----------------------------------------ceeee-cCCCCCeEEEEEcCCC
Q 000346 130 FHRRMSVTVVGTVEGGRA----------------------------------------PTKIK-TDLKKPIVNLACHPRL 168 (1630)
Q Consensus 130 s~Dg~tI~IwDl~sg~~~----------------------------------------~i~il-~gH~~~ItsLafSPdg 168 (1630)
++|. +|++|.+.....+ +.+++ ..|.--|.++.|+.|.
T Consensus 106 tNdk-tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDK-TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCc-eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7778 8999987643100 01111 4566678899999888
Q ss_pred CEEEEEeCCCeEEEEEcCCCcEEEEEec---------CCceeecCcccEEEcCC-CCEEEEEeCCCeEEEEECCCC----
Q 000346 169 PVLYVAYADGLIRAYNIHTYAVHYTLQL---------DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIE---- 234 (1630)
Q Consensus 169 ~lLaSgS~DGtIrIWDl~t~~~i~tL~~---------~~~V~IsGi~sVafSPD-g~~LaSgS~DGtVrVWDl~tg---- 234 (1630)
..++++ .|=.|-+|++.-..-.+.+.. ..-|+ +..|||. ...+...+..|.|++-|++..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVIt-----SaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVIT-----SAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHh-----hcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 888766 578899999874433233221 12233 8899994 456666777999999999832
Q ss_pred -Ccee---------EEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeecC
Q 000346 235 -RPSM---------IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 235 -k~~l---------v~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~~ 280 (1630)
.+.+ +..+.+-.+.|+.+.|+++|++|++-+. -+|+|||++...+
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 1100 1122233477899999999999987553 4899999986554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.033 Score=68.87 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=126.9
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEE-EEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-------
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVR-MAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPE------- 103 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~Vts-VafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspd------- 103 (1630)
+..+++++. +.+.-+|..+|+.+...+..+.+.+ .... + ..++.++.++.|..+|.++|+..-.+...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-D--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 345566665 7899999999998887764433332 1222 3 45666778899999999888762222111
Q ss_pred ---------CCeEEeecCCeEEE---------EEc--------------------C--CCCEEEEEecCCcEEEEEEccc
Q 000346 104 ---------KKMESISVDTEVHL---------ALT--------------------P--LQPVVFFGFHRRMSVTVVGTVE 143 (1630)
Q Consensus 104 ---------g~~asgs~Dgtv~L---------~~s--------------------p--dg~~LaSgs~Dg~tI~IwDl~s 143 (1630)
+..+.+..++.+.. |.. | .+..++.++.++ .+..+|..+
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~t 275 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRS 275 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCC
Confidence 01111222222111 110 0 123455566667 777777777
Q ss_pred CCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeC
Q 000346 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1630)
Q Consensus 144 g~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~ 222 (1630)
+. .+-... ......+.. .+..+++++.+|.+..+|..+++.+..... ..... .+... .+.+|+.++.
T Consensus 276 G~--~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~----~sp~v--~~g~l~v~~~ 343 (394)
T PRK11138 276 GQ--IVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL----TAPVL--YNGYLVVGDS 343 (394)
T ss_pred CC--EEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc----cCCEE--ECCEEEEEeC
Confidence 63 222111 011111222 355677778889999999888877665432 11111 02222 2457888899
Q ss_pred CCeEEEEECCCCCceeEEEeeccCCCeEE-EEEeCCCCEEEEEECCCceEEEEe
Q 000346 223 RGTLLAWDVSIERPSMIGIIQVGSQPITS-VAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 223 DGtVrVWDl~tgk~~lv~tL~gH~~~Vss-VsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
||.+.+.|..+++. +.....+...+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 344 ~G~l~~ld~~tG~~--~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRF--VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCE--EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999984 4444333222322 222 2447888899999988763
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.011 Score=68.41 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=106.7
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc------CC--CCEEEEEEeCCC--C---CEEEEEECCCeEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID------IN--SPVVRMAYSPTS--G---HAVVAILEDCTIRS 88 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~------~~--~~VtsVafSpd~--g---~lLaSgS~DGtIrV 88 (1630)
+=+-++||||+.+||.+.. |+|++||+... .+..+. +. ..|..+.|.+-. . ..|++...+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 4567999999999999998 99999999853 333333 11 457777776541 1 14555567788877
Q ss_pred EECCCC--cE-----EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEE
Q 000346 89 CDFDTE--QS-----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN 161 (1630)
Q Consensus 89 WDl~tg--e~-----~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~Its 161 (1630)
|-+..+ +. .+.|+.. ...|+..+.++|..+.++.|+.... ..+. -......+++
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~------yp~Gi~~~vy~p~h~LLlVgG~~~~-------~~~~------s~a~~~GLta 184 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSH------YPHGINSAVYHPKHRLLLVGGCEQN-------QDGM------SKASSCGLTA 184 (282)
T ss_pred EEEEcccCCcceeeEEEEeccc------CCCceeEEEEcCCCCEEEEeccCCC-------CCcc------ccccccCceE
Confidence 765322 11 2233211 1235567788888887777665431 1110 0001122222
Q ss_pred EEEcCCCCE--EEEEeCCCe------EEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEEC
Q 000346 162 LACHPRLPV--LYVAYADGL------IRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1630)
Q Consensus 162 LafSPdg~l--LaSgS~DGt------IrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl 231 (1630)
-..-.+..+ .+..+.|+. -.+|.+-+.+.. .... .+.|. .|..||||..|++...+|.|.+|++
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~-----kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIF-----KMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccceeee-eccccCCCceE-----EEEECCCCCEEEEEEcCCeEEEEec
Confidence 222222221 112222221 123333222221 1112 56676 9999999999999999999999999
Q ss_pred CCCC
Q 000346 232 SIER 235 (1630)
Q Consensus 232 ~tgk 235 (1630)
.+-+
T Consensus 259 PsL~ 262 (282)
T PF15492_consen 259 PSLR 262 (282)
T ss_pred Ccch
Confidence 8754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.043 Score=68.88 Aligned_cols=111 Identities=15% Similarity=0.233 Sum_probs=76.9
Q ss_pred CeEEEEEcC-CCCEEEEE----eCCCe----EEEEEcCCCcEE----EEEecCCceeecCcccEEEcCCCCEEEEEeCCC
Q 000346 158 PIVNLACHP-RLPVLYVA----YADGL----IRAYNIHTYAVH----YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1630)
Q Consensus 158 ~ItsLafSP-dg~lLaSg----S~DGt----IrIWDl~t~~~i----~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DG 224 (1630)
...++.|+- +...+.+. +.+|. -.+|++...+.. ..+.....+. +++++|+...++.|+.||
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~-----~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI-----CCARSPSEDKLVLGCEDG 281 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce-----EEecCcccceEEEEecCC
Confidence 345666765 33344332 23343 245555443322 2222355565 999999999999999999
Q ss_pred eEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 225 TLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 225 tVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+|.+||...+.. .+..+.-..+.++|||+|.++++|+..|.+.+||+..
T Consensus 282 SiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 282 SIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred eEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 999999987642 1223345678999999999999999999999999863
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0027 Score=75.51 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=137.6
Q ss_pred CCcEEEEEcCCCC-EEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---
Q 000346 22 LQPHEAAFHPNQA-LIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS--- 96 (1630)
Q Consensus 22 ~rV~~LaFSPdG~-lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~--- 96 (1630)
..|+.++|||..+ ++..++- ..|+|.|+++...+..+..+..+++++|.-++.++|.+|...|.|.+||++..+.
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~ 273 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLM 273 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHh
Confidence 3899999999888 6677777 5599999999999999987799999999988788999999999999999975543
Q ss_pred ----EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCC--ccceeeecCCCCCeEEEEEcCCCCE
Q 000346 97 ----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG--RAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 97 ----~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~--~~~i~il~gH~~~ItsLafSPdg~l 170 (1630)
.++.+|--+..-.... ...+.+..++..+.+- ..|...-.. ..++..+ +..+...++++++..++
T Consensus 274 e~~a~~t~~pv~~i~~~~~n-----~~f~~gglLv~~lt~l---~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 274 ELVANVTINPVHKIAPVQPN-----KIFTSGGLLVFALTVL---QFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSNH 344 (463)
T ss_pred hhhhhhccCcceeecccCcc-----ccccccceEEeeehhh---hhhhhhccccCCCccccc-CCCcceeeeeecCccce
Confidence 1111211110000000 1123344454444443 556654321 1222222 22456667777776565
Q ss_pred EEEEeCCC-------eEEE-EEcCCCcEEEEEe----cCCceeecCcccEEEcCCCCEEEE-EeCCCeEEEEECCCCCce
Q 000346 171 LYVAYADG-------LIRA-YNIHTYAVHYTLQ----LDNTIKLLGAGAFAFHPTLEWLFV-GDRRGTLLAWDVSIERPS 237 (1630)
Q Consensus 171 LaSgS~DG-------tIrI-WDl~t~~~i~tL~----~~~~V~IsGi~sVafSPDg~~LaS-gS~DGtVrVWDl~tgk~~ 237 (1630)
++...... .|-. -|..+|..+..-. +.....+.--..+.-.++.++|+. +++.+.+.+||..+.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e-- 422 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE-- 422 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh--
Confidence 55444321 1111 1222232221111 100000000001112335555544 4456789999999987
Q ss_pred eEEEeeccCCCeEEEEEeC-C-CCEEEEEECCCceEEEEe
Q 000346 238 MIGIIQVGSQPITSVAWLP-M-LRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 238 lv~tL~gH~~~VssVsfSP-d-G~lLaSgS~DGtIrIWDl 275 (1630)
+++++.- ..+|.+++... + +.+|++-. |..++|+..
T Consensus 423 vvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~ 460 (463)
T KOG1645|consen 423 VVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKN 460 (463)
T ss_pred eeeeccc-CcceeecceeecCCcchhhhee-cceEEEEec
Confidence 4777765 47788777654 3 44666655 567777764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0056 Score=78.01 Aligned_cols=216 Identities=11% Similarity=0.029 Sum_probs=138.3
Q ss_pred EEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEEC----CCeEEEEECCCCcEEEEE
Q 000346 27 AAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE----DCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 27 LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~----DGtIrVWDl~tge~~v~f 100 (1630)
+=++|||+.+...+. +.+.+.|.++.+....+...+....+.++++ +.++.+.+. ..++..-+..+....+.|
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCC-CCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 345678887766655 4489999999888888876666788899999 888777752 233444443333334444
Q ss_pred cCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEccc----CCccceeeecCCCCCeEEEEEcCCCCEEEEEe-
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVE----GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY- 175 (1630)
Q Consensus 101 spdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~s----g~~~~i~il~gH~~~ItsLafSPdg~lLaSgS- 175 (1630)
+..+-. ...++|..... .+. .|.++|..+ +. ..+..+. -......+.++|||+++++++
T Consensus 277 ni~~ie-----------a~vkdGK~~~V--~gn-~V~VID~~t~~~~~~-~v~~yIP-VGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 277 NIARIE-----------EAVKAGKFKTI--GGS-KVPVVDGRKAANAGS-ALTRYVP-VPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred chHHHH-----------HhhhCCCEEEE--CCC-EEEEEECCccccCCc-ceEEEEE-CCCCccceEECCCCCEEEEeCC
Confidence 433211 11234444333 234 789999887 32 3333332 245667899999999887766
Q ss_pred CCCeEEEEEcCCCcE------------EEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC------C-
Q 000346 176 ADGLIRAYNIHTYAV------------HYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE------R- 235 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~------------i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg------k- 235 (1630)
.+.+|.|+|+.+.+. ....+. .+++ ..+|+++|....+..-|..|..||+.+. +
T Consensus 341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL------HTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~ 414 (635)
T PRK02888 341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL------HTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK 414 (635)
T ss_pred CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc------eEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc
Confidence 689999999987542 222222 3444 7899999988888888999999998861 1
Q ss_pred -ceeEEEeeccCCCeEEE-----EEeCCCCEEEEEE
Q 000346 236 -PSMIGIIQVGSQPITSV-----AWLPMLRLLVTLC 265 (1630)
Q Consensus 236 -~~lv~tL~gH~~~VssV-----sfSPdG~lLaSgS 265 (1630)
..++..+..|-++-.-. .-.|||++|++..
T Consensus 415 ~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 415 VDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 12455555554433222 2367889888865
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=80.56 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=102.7
Q ss_pred EEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCC---ccceeeecC
Q 000346 78 VAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG---RAPTKIKTD 154 (1630)
Q Consensus 78 aSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~---~~~i~il~g 154 (1630)
++.+.+..|-+-|++||... .|. +......+-++..+++++.|+..+ .|..+|++.+. ..+.+.+ -
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~--------sksDVfAlQf~~s~nLv~~GcRng-eI~~iDLR~rnqG~~~~a~rl-y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ--------SKSDVFALQFAGSDNLVFNGCRNG-EIFVIDLRCRNQGNGWCAQRL-Y 296 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc--------cchhHHHHHhcccCCeeEecccCC-cEEEEEeeecccCCCcceEEE-E
Confidence 44455667777777766320 010 111223445566778999999999 99999998751 1333333 3
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcE---EEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEE
Q 000346 155 LKKPIVNLACHP-RLPVLYVAYADGLIRAYNIHTYAV---HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1630)
Q Consensus 155 H~~~ItsLafSP-dg~lLaSgS~DGtIrIWDl~t~~~---i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWD 230 (1630)
|...|+++..-. ++.+|.+.+.+|+|++||++.-++ +.+.++ .|+..--.-+..++....++++++|...+||.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG--HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG--HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec--ccccccccccccccccceEEEccCeeEEEEEe
Confidence 788999988766 778899999999999999997776 555554 22200001345566777899999999999999
Q ss_pred CCCCCceeEEEee
Q 000346 231 VSIERPSMIGIIQ 243 (1630)
Q Consensus 231 l~tgk~~lv~tL~ 243 (1630)
++.+.. +.++.
T Consensus 375 l~~ghL--l~tip 385 (425)
T KOG2695|consen 375 LDSGHL--LCTIP 385 (425)
T ss_pred cccCce--eeccC
Confidence 999873 54443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.02 Score=70.21 Aligned_cols=220 Identities=13% Similarity=0.119 Sum_probs=137.3
Q ss_pred EEEEcCCCCEEEEEECCeEEEEECCCCcEE-EEEc-CC-CCEEEEEEeCC-CCCEEEE-----EECCCeEEEEECCCCcE
Q 000346 26 EAAFHPNQALIAVAIGTYIIEFDTLTGSRI-ASID-IN-SPVVRMAYSPT-SGHAVVA-----ILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~GtI~VWDl~tg~~i-~tl~-~~-~~VtsVafSpd-~g~lLaS-----gS~DGtIrVWDl~tge~ 96 (1630)
-+.|+-+..++|--....+.|+++ ++... .-+. .. ..|+...|+|. ++..|+. .+.++++++|.+-.+..
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 677888888777665566888887 33322 1111 11 56788888886 2334443 34678899998865443
Q ss_pred ------------EEEEcCCCCe-EEe---e-----------------------------cCCeEEEEEcCCCCEEEEE--
Q 000346 97 ------------FVLHSPEKKM-ESI---S-----------------------------VDTEVHLALTPLQPVVFFG-- 129 (1630)
Q Consensus 97 ------------~v~fspdg~~-asg---s-----------------------------~Dgtv~L~~spdg~~LaSg-- 129 (1630)
.+.|++.|.. +.- + .|-...+.|.|.+..+++.
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEec
Confidence 4556665554 110 0 0111234455555544433
Q ss_pred ecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCcE-EEEEecCCceeecCc
Q 000346 130 FHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA---DGLIRAYNIHTYAV-HYTLQLDNTIKLLGA 205 (1630)
Q Consensus 130 s~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~---DGtIrIWDl~t~~~-i~tL~~~~~V~IsGi 205 (1630)
-... .+.++|+... ....+ ....=..+.|+|.+++++.++- -|.|-+||...... +..+.+.+. .
T Consensus 295 ~~pa-~~s~~~lr~N---l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-s---- 363 (561)
T COG5354 295 YMPA-SVSVFDLRGN---LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-S---- 363 (561)
T ss_pred cccc-ceeecccccc---eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-e----
Confidence 3444 6666776543 11111 2334456889999999988774 47899999765543 335554332 2
Q ss_pred ccEEEcCCCCEEEEEeC------CCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC
Q 000346 206 GAFAFHPTLEWLFVGDR------RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 206 ~sVafSPDg~~LaSgS~------DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG 268 (1630)
.+.|+||+.++.+... |..++|||+.... +. ..+.+.|.|.|++..+.|.+.
T Consensus 364 -~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~---~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 364 -YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK---VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -EeeccCCceEEEecCCCcccccCcceEEEEecCch---hh-------hhhhccccCCcccceeeccCC
Confidence 5789999999887753 7889999998544 21 567889999999888877665
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.03 Score=68.28 Aligned_cols=240 Identities=17% Similarity=0.184 Sum_probs=134.2
Q ss_pred cCCCCEEEEE----------ECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 30 HPNQALIAVA----------IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 30 SPdG~lLasg----------s~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
|||+++++.. ..+.+.|||+.+++..........+....|+|+ |+.++... ++.|.+++..++.. ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~-~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQE-TQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEE-EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecC-CCeeEEEe-cCceEEEECCCCCe-EE
Confidence 6888888873 335589999998776544434578999999999 99999885 58999999876643 22
Q ss_pred EcCCCCe--EEeec---------CCeEEEEEcCCCCEEEEEecC-----------------------------------C
Q 000346 100 HSPEKKM--ESISV---------DTEVHLALTPLQPVVFFGFHR-----------------------------------R 133 (1630)
Q Consensus 100 fspdg~~--asgs~---------Dgtv~L~~spdg~~LaSgs~D-----------------------------------g 133 (1630)
+..+|.. ..|-. +....+|++|++..|+....| .
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2222211 11111 112445566666555443211 1
Q ss_pred cEEEEEEcccCCccceeee---cCCCCCeEEEEEcCCCCEEEEEe--CC---CeEEEEEcCCCcEEEEEec--CCceeec
Q 000346 134 MSVTVVGTVEGGRAPTKIK---TDLKKPIVNLACHPRLPVLYVAY--AD---GLIRAYNIHTYAVHYTLQL--DNTIKLL 203 (1630)
Q Consensus 134 ~tI~IwDl~sg~~~~i~il---~gH~~~ItsLafSPdg~lLaSgS--~D---GtIrIWDl~t~~~i~tL~~--~~~V~Is 203 (1630)
..+.++|+.++....+... ..-...+..+.|.+++..|++.- .+ ..+.++|..++.+...+.. ..+|.
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~-- 235 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD-- 235 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS--
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee--
Confidence 2345566655521111111 22356788999999988444433 32 2467778877766544443 44442
Q ss_pred CcccEEEc-CCC-CEEEEEeCCCeEEEE--ECCCCCceeEEEeeccCCCeEE-EEEeCCCCEEE-EEECC--CceEEEEe
Q 000346 204 GAGAFAFH-PTL-EWLFVGDRRGTLLAW--DVSIERPSMIGIIQVGSQPITS-VAWLPMLRLLV-TLCRD--GSLQVWKT 275 (1630)
Q Consensus 204 Gi~sVafS-PDg-~~LaSgS~DGtVrVW--Dl~tgk~~lv~tL~gH~~~Vss-VsfSPdG~lLa-SgS~D--GtIrIWDl 275 (1630)
-.....|. +++ .++.....||.-+|| +...+. ...+..+...|.. +.|+++++.|. ++..+ +.-.+|.+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 12244554 554 555566677766655 555444 4456666677755 67788877554 44442 35566766
Q ss_pred ee
Q 000346 276 RV 277 (1630)
Q Consensus 276 ~~ 277 (1630)
+.
T Consensus 313 ~~ 314 (353)
T PF00930_consen 313 SL 314 (353)
T ss_dssp ET
T ss_pred Ee
Confidence 53
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0036 Score=79.82 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=113.7
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEc
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fs 101 (1630)
.+.|+++| ++.|+.|.. |.|++++.... ....+.|... .-+ |.+++||+.||+|.|-.+.+.+.+..+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~~~~~~~s~~------~~~-Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-PKTNFDHSSS------ILE-GEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-cccccccccc------ccC-CceEEEecCCCcEEEeeccCCccceeEe
Confidence 45666766 688999998 78999998733 3222323322 445 9999999999999999887665422222
Q ss_pred CCCCeEEeecCCeEEEEEcCC-----CCEEEEEecCCcEEEEEE--cccCCccceeeecCCCCCeEEEEEcCCCCEEEEE
Q 000346 102 PEKKMESISVDTEVHLALTPL-----QPVVFFGFHRRMSVTVVG--TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 102 pdg~~asgs~Dgtv~L~~spd-----g~~LaSgs~Dg~tI~IwD--l~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSg 174 (1630)
-+. -.-.++++|+ ...+++|+..+ +.++. |... .....+..-.++|.++.|. |+++|-+
T Consensus 111 f~r--------piksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgn--k~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 111 FKR--------PIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGN--KDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred cCC--------cceeEEeccchhhhhhhheeecCcce--EEEehhhhhcC--ccceeeecCccceEEEEec--CcEEEEe
Confidence 111 1123444444 24566666655 22222 2212 1222344557899999995 7799988
Q ss_pred eCCCeEEEEEcCCCcEEEEEec-CCceeecC-cccEEEcCCCCEEEEEeCCCeEEEEECC
Q 000346 175 YADGLIRAYNIHTYAVHYTLQL-DNTIKLLG-AGAFAFHPTLEWLFVGDRRGTLLAWDVS 232 (1630)
Q Consensus 175 S~DGtIrIWDl~t~~~i~tL~~-~~~V~IsG-i~sVafSPDg~~LaSgS~DGtVrVWDl~ 232 (1630)
+.+| |+|||+.+.+.+..++- ...++..- .+.+.|.++.+ |+.|- ..+|+|..++
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 7665 89999998888777764 33332111 24678887654 55554 4567887777
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.021 Score=75.83 Aligned_cols=245 Identities=13% Similarity=0.152 Sum_probs=133.8
Q ss_pred CcEEEEEcCCCCEEEEEEC-Ce--EEEEECC-CCc---EEEEEc---CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECC
Q 000346 23 QPHEAAFHPNQALIAVAIG-TY--IIEFDTL-TGS---RIASID---INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-Gt--I~VWDl~-tg~---~i~tl~---~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~ 92 (1630)
...+...+|.-..++++.. +. +..+... .++ ....+. +...|.++.|..+ ++-++.+..+|.|.+-|..
T Consensus 20 ~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d-~~~i~v~~~~G~iilvd~e 98 (1265)
T KOG1920|consen 20 NAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLAD-TNSICVITALGDIILVDPE 98 (1265)
T ss_pred chhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecc-cceEEEEecCCcEEEEccc
Confidence 4455666776666666644 33 5555443 233 122222 3368999999999 8888888899999999887
Q ss_pred CCcE-----------EEEEcCCCCe-EEeecCCeEEEEEcC-----CC---------CEEEEEecCCcEEEEEEcccCCc
Q 000346 93 TEQS-----------FVLHSPEKKM-ESISVDTEVHLALTP-----LQ---------PVVFFGFHRRMSVTVVGTVEGGR 146 (1630)
Q Consensus 93 tge~-----------~v~fspdg~~-asgs~Dgtv~L~~sp-----dg---------~~LaSgs~Dg~tI~IwDl~sg~~ 146 (1630)
+... +.+|+|+... +..+..+++-+.... .. ...+.++..+ .=.-+.-..+.
T Consensus 99 t~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqfrgs~gr- 176 (1265)
T KOG1920|consen 99 TLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQFRGSEGR- 176 (1265)
T ss_pred ccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceeeecchhh-
Confidence 7654 4555555555 222222222211110 00 0001111000 00000000000
Q ss_pred cceeeecC---------CCCCeEEEEEcCCCCEEEEEe----CC-CeEEEEEcCCCcEEEEEec-CCceeecCcccEEEc
Q 000346 147 APTKIKTD---------LKKPIVNLACHPRLPVLYVAY----AD-GLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFH 211 (1630)
Q Consensus 147 ~~i~il~g---------H~~~ItsLafSPdg~lLaSgS----~D-GtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafS 211 (1630)
........ ....=+++.|--||.++|+.. .+ +.|+|||.+ +....+-.. .+.-. +++|-
T Consensus 177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~-----~LsWk 250 (1265)
T KOG1920|consen 177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQH-----SLSWK 250 (1265)
T ss_pred hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccccccc-----ceeec
Confidence 00000000 011224689999999999844 33 799999976 544333332 23333 88999
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCCc-eeEEEeeccCCCeEEEEEeCCCCEEEE---EECCCceEEEEee
Q 000346 212 PTLEWLFVGD---RRGTLLAWDVSIERP-SMIGIIQVGSQPITSVAWLPMLRLLVT---LCRDGSLQVWKTR 276 (1630)
Q Consensus 212 PDg~~LaSgS---~DGtVrVWDl~tgk~-~lv~tL~gH~~~VssVsfSPdG~lLaS---gS~DGtIrIWDl~ 276 (1630)
|.|.++++-. +|+.|.++.-+--+. ..+-.+......|..++|+.++.+|++ ......|++|-+.
T Consensus 251 Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 251 PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 9999988764 466788887542110 011112222344899999999999987 4444459999875
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.022 Score=67.47 Aligned_cols=190 Identities=16% Similarity=0.125 Sum_probs=109.9
Q ss_pred EEEEcCCCCEEEEEEC------CeEEEEECC-CCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEE-------CCCeEEEEE
Q 000346 26 EAAFHPNQALIAVAIG------TYIIEFDTL-TGSRIASIDIN-SPVVRMAYSPTSGHAVVAIL-------EDCTIRSCD 90 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~------GtI~VWDl~-tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS-------~DGtIrVWD 90 (1630)
.-+||+||++|++.-. |.|-|||.. +-+.+.++..+ -.-..+.+.|| +..|+.+- +.|.-++ |
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kL-N 132 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPDSGRAKL-N 132 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcccCceec-C
Confidence 3579999999998754 349999999 56777888744 55678889999 86666653 1222222 3
Q ss_pred CCCCcEEEEEc--CCCCeE---Ee----ecCCeEEEEEcCCCCEEEEEecCC------cEEEEEEcccCC---ccceeee
Q 000346 91 FDTEQSFVLHS--PEKKME---SI----SVDTEVHLALTPLQPVVFFGFHRR------MSVTVVGTVEGG---RAPTKIK 152 (1630)
Q Consensus 91 l~tge~~v~fs--pdg~~a---sg----s~Dgtv~L~~spdg~~LaSgs~Dg------~tI~IwDl~sg~---~~~i~il 152 (1630)
+++.+..+.+- .+|..+ .- ..-..+++.+..+|..++..-..+ --|-+++....- .......
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 33333333322 333331 01 111235666666665444333222 011111111100 0000111
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCe
Q 000346 153 TDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1630)
Q Consensus 153 ~gH~~~ItsLafSPdg~lLaSgS-~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGt 225 (1630)
....+++-+|++++++.++++.| ..+.+.+||..+++.+......+.+ .++-.+++ ++++.+ .|.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~c------Gva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDAC------GVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCcee------eeeecCCc-eEEeCC-Ccc
Confidence 33468999999999999887666 7789999999999988666543322 67777776 555544 444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.018 Score=73.57 Aligned_cols=228 Identities=10% Similarity=0.015 Sum_probs=131.5
Q ss_pred CCCCEEEEEEC--CeEEEEECCCCcEEEEEc-CC-CCEEEEEEe--CCCCCEEEEEEC-------CCeEEEEECCCCcEE
Q 000346 31 PNQALIAVAIG--TYIIEFDTLTGSRIASID-IN-SPVVRMAYS--PTSGHAVVAILE-------DCTIRSCDFDTEQSF 97 (1630)
Q Consensus 31 PdG~lLasgs~--GtI~VWDl~tg~~i~tl~-~~-~~VtsVafS--pd~g~lLaSgS~-------DGtIrVWDl~tge~~ 97 (1630)
.||+||+.-.. .+|-.-+++..++-+.++ .. ..+..++|- |+ ..+++++++ ||.. +.+...-...
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~-t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~ 216 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPR-TGYVFCNGEFRIPLPNDGKD-LDDPKKYRSL 216 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCC-ccEEEeCcccccccCCCCCE-eecccceeEE
Confidence 37889988877 347777887777766666 33 667777775 66 566666653 4432 2222111111
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcE--EEEEEcccCCccceeeecCCCCCeEEEEEc--------CC
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMS--VTVVGTVEGGRAPTKIKTDLKKPIVNLACH--------PR 167 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~t--I~IwDl~sg~~~~i~il~gH~~~ItsLafS--------Pd 167 (1630)
+.+- |.. ...-...+.... ....+..+.++.. +..++.+.+ ..+..+...... ..+.|+ ++
T Consensus 217 vSvI-D~e----tmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G--~tl~em~a~e~d-~~vvfni~~iea~vkd 287 (635)
T PRK02888 217 FTAV-DAE----TMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEG--VTLAEMMAAERD-WVVVFNIARIEEAVKA 287 (635)
T ss_pred EEEE-ECc----cceEEEEEEeCC-CcccceECCCCCEEEEeccCcccC--cceeeeccccCc-eEEEEchHHHHHhhhC
Confidence 1110 000 000012222222 2222333334412 222233444 222222111111 333343 46
Q ss_pred CCEEEEEeCCCeEEEEEcCC-----CcEEEEEecCCceeecCcccEEEcCCCCEEEEEeC-CCeEEEEECCCCCc-----
Q 000346 168 LPVLYVAYADGLIRAYNIHT-----YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIERP----- 236 (1630)
Q Consensus 168 g~lLaSgS~DGtIrIWDl~t-----~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~-DGtVrVWDl~tgk~----- 236 (1630)
|++..+ .+++|.++|.++ ...+..+......+ .+.++|||+++++++. +.+|.|.|+.+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH-----GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPH-----GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCcc-----ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 776655 367899999988 46666676666666 9999999999888775 89999999987442
Q ss_pred -----eeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 237 -----SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 237 -----~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
.++.......++ ....|.++|....|..-|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 124444443333 5688999999999999999999999874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.04 Score=69.16 Aligned_cols=216 Identities=12% Similarity=0.085 Sum_probs=119.3
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEE-ECCCCcEEEEEc
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSC-DFDTEQSFVLHS 101 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVW-Dl~tge~~v~fs 101 (1630)
.+..++++|+|+.++++++|.-.|+.....+.... +.-...+|+++ + .+|+-...++|.++ +++... ...+.
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~-n-~yAv~~~~~~I~I~kn~~~~~-~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSR-N-RYAVLESSSTIKIYKNFKNEV-VKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TS-S-EEEEE-TTS-EEEEETTEE-T-T----
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecC-c-cEEEEECCCeEEEEEcCcccc-ceEEc
Confidence 57899999999999999999988888544443222 44456778885 4 46777678899996 332111 00111
Q ss_pred CCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 000346 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181 (1630)
Q Consensus 102 pdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIr 181 (1630)
+.. ..-.++. |..+...+.+ .|.+|||.++ ..+..+.. ..|..+.|++++.+++..+.+ ++.
T Consensus 107 ~~~--------~~~~If~---G~LL~~~~~~--~i~~yDw~~~--~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 107 LPF--------SVEKIFG---GNLLGVKSSD--FICFYDWETG--KLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp -SS---------EEEEE----SSSEEEEETT--EEEEE-TTT----EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred CCc--------ccceEEc---CcEEEEECCC--CEEEEEhhHc--ceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEE
Confidence 110 0112222 6655555444 6899999988 66666653 238999999999999988754 777
Q ss_pred EEEcCCC-----------cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCe
Q 000346 182 AYNIHTY-----------AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 249 (1630)
Q Consensus 182 IWDl~t~-----------~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~V 249 (1630)
|++.... .....+.. ...|. +..|..| .++-.+.. .++- +-.|+...+..+ ..++
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~Ik-----Sg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l---d~~~ 235 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIK-----SGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL---DKPL 235 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--S-----EEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE----SS--
T ss_pred EEEecchhcccccccCchhceEEEEEecceeE-----EEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc---CCce
Confidence 8775533 02233333 56677 8888877 44444434 6664 555663333333 4567
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.=+.+.++.+.+.....|+.|..+.+.
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 778888877888888999999988876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.091 Score=68.02 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=131.3
Q ss_pred ccceeeeeeeeccCCCCCCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEE
Q 000346 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAI 80 (1630)
Q Consensus 3 W~t~q~LelqhvGrg~skp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSg 80 (1630)
|.-.+.++...+.... .-....--+|++.+..++.|+. |.|.+.+-. -+.+..++.+ ..+...-|.-+..++|++.
T Consensus 6 WrrF~lFq~~~i~~~~-~~~G~~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 6 WRRFSLFQWKEIPSLE-NFVGNAISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred cceeeeeeeeecCCcc-cCCCCceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEE
Confidence 7777777766663211 1111123356788889999988 777776633 3334666633 3333333444425788888
Q ss_pred ECCC-----eEEEEECCCCcE-----EE---EEcC--CCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcc---
Q 000346 81 LEDC-----TIRSCDFDTEQS-----FV---LHSP--EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV--- 142 (1630)
Q Consensus 81 S~DG-----tIrVWDl~tge~-----~v---~fsp--dg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~--- 142 (1630)
+.|+ .|++|+++.-+. ++ ...+ .. ....-...+..+.+-..+++|..+| .|.++.-.
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np----~~~~p~s~l~Vs~~l~~Iv~Gf~nG-~V~~~~GDi~R 158 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP----TNPSPASSLAVSEDLKTIVCGFTNG-LVICYKGDILR 158 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCC----CCCCcceEEEEEccccEEEEEecCc-EEEEEcCcchh
Confidence 8765 489999864321 22 1111 11 0111224567777788999999999 77777532
Q ss_pred cCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcE-EEEEec-CCceeecCcccEEEcCCCCEEEEE
Q 000346 143 EGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV-HYTLQL-DNTIKLLGAGAFAFHPTLEWLFVG 220 (1630)
Q Consensus 143 sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~-i~tL~~-~~~V~IsGi~sVafSPDg~~LaSg 220 (1630)
..+ ...........+|+.+++..++..++.+..-..|.+|.+....+ ..++.. +..++ |..|++....++++
T Consensus 159 Drg-sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln-----Css~~~~t~qfIca 232 (933)
T KOG2114|consen 159 DRG-SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLN-----CSSFSDGTYQFICA 232 (933)
T ss_pred ccc-cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccce-----eeecCCCCccEEEe
Confidence 111 22222223368999999999888733333456899999884442 344554 66677 88888765545555
Q ss_pred eCCCeEEEEECCCCC
Q 000346 221 DRRGTLLAWDVSIER 235 (1630)
Q Consensus 221 S~DGtVrVWDl~tgk 235 (1630)
+ +..+.+||.....
T Consensus 233 ~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 233 G-SEFLYFYDSDGRG 246 (933)
T ss_pred c-CceEEEEcCCCcc
Confidence 4 4678999988544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00045 Score=87.37 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=123.3
Q ss_pred EEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC
Q 000346 55 IASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR 133 (1630)
Q Consensus 55 i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg 133 (1630)
.+++. +....+|++|+-+ .++|+.|+..|.|+++++.+|..--.++ ++......+--+.+|...++.+.-.
T Consensus 1094 w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~n-------cH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVN-------CHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred chhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCcccccccc-------ccccccccccccCCcceeeeecccc
Confidence 44555 4478999999998 8999999999999999998885411111 1111122233344554444333222
Q ss_pred -cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEE-Eec----CCceeecCccc
Q 000346 134 -MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT-LQL----DNTIKLLGAGA 207 (1630)
Q Consensus 134 -~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~t-L~~----~~~V~IsGi~s 207 (1630)
--..+|+..+.. ...+.+.+ -.++.|+.....-+.|+......+||+.++..+.+ +.. ...-+ +
T Consensus 1166 ~PlsaLW~~~s~~-~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n-----~ 1235 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG-GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN-----L 1235 (1516)
T ss_pred CchHHHhcccccc-Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc-----c
Confidence 134688876643 44444442 34677876544445565556789999999987777 332 22224 7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEeeeec
Q 000346 208 FAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 208 VafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~~~ 279 (1630)
..|+|+...++ .|| .+||++..+. ++.+...+..+ .=.|||.|.-++..|+ |||+++-.
T Consensus 1236 a~FsP~D~LIl---ndG--vLWDvR~~~a--Ih~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDG--VLWDVRIPEA--IHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred cccCCCcceEe---eCc--eeeeeccHHH--Hhhhhhheecc-cccccCCCceEEeech-----hhhhHHHH
Confidence 89999988776 356 5799997653 54444333222 3469999998888664 89998543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.013 Score=75.04 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=98.1
Q ss_pred CCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceee
Q 000346 123 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 202 (1630)
Q Consensus 123 g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~I 202 (1630)
+..++.|++++ .|++++.... . .+...|+.. .-+|.++++||.||+|.|-.+.+.+...++.-..++.
T Consensus 49 ~~~~~~GtH~g-~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpik- 116 (846)
T KOG2066|consen 49 DKFFALGTHRG-AVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIK- 116 (846)
T ss_pred cceeeeccccc-eEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcce-
Confidence 45788899998 8888886543 2 333344433 5589999999999999999999888877777788888
Q ss_pred cCcccEEEcCC-----CCEEEEEeCCCeEEEEECCC--CCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEe
Q 000346 203 LGAGAFAFHPT-----LEWLFVGDRRGTLLAWDVSI--ERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 203 sGi~sVafSPD-----g~~LaSgS~DGtVrVWDl~t--gk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl 275 (1630)
+++++|+ .+.+++|+.-| +.++.-+- .+. ...+....++|.++.|. |.+||-++.+ -|+|||+
T Consensus 117 ----sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~ 186 (846)
T KOG2066|consen 117 ----SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDT 186 (846)
T ss_pred ----eEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--CcEEEEecCC-CcEEEec
Confidence 9999997 56789999888 77764331 111 11355556899999997 5588887755 5789998
Q ss_pred e
Q 000346 276 R 276 (1630)
Q Consensus 276 ~ 276 (1630)
.
T Consensus 187 ~ 187 (846)
T KOG2066|consen 187 P 187 (846)
T ss_pred c
Confidence 7
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.22 Score=58.12 Aligned_cols=206 Identities=16% Similarity=0.161 Sum_probs=109.0
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEc--CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASID--INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~--~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v 98 (1630)
.+.+++|+|+...|++..+ +.|..++. +|+.++.+. +.+..-+|++..+ +.++++.-.++.+.++++.....
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~~~~~~~-- 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFTIDDDTT-- 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEEE----T--
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEEEecccc--
Confidence 5999999998776666666 55888886 488888887 3378899999876 66665554588888887632110
Q ss_pred EEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
.+... .+.-+.+... ..++..+-.++|+|.++.|+++-...
T Consensus 99 ---------------~~~~~----------------~~~~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~kE~~ 139 (248)
T PF06977_consen 99 ---------------SLDRA----------------DVQKISLGFP--------NKGNKGFEGLAYDPKTNRLFVAKERK 139 (248)
T ss_dssp ---------------T--EE----------------EEEEEE---S-----------SS--EEEEEETTTTEEEEEEESS
T ss_pred ---------------ccchh----------------hceEEecccc--------cCCCcceEEEEEcCCCCEEEEEeCCC
Confidence 00000 0011111000 11245577899999888777777766
Q ss_pred eEEEEEcCC---CcEEEEEec----CCceeecCcccEEEcCC-CCEEEEEeCCCeEEEEECCCCCceeEEEeec--cC--
Q 000346 179 LIRAYNIHT---YAVHYTLQL----DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQV--GS-- 246 (1630)
Q Consensus 179 tIrIWDl~t---~~~i~tL~~----~~~V~IsGi~sVafSPD-g~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g--H~-- 246 (1630)
-.++|.++. ......... .....+.....++++|. +.+++.+..+..|..+| .+++..-...+.. |.
T Consensus 140 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 140 PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS 218 (248)
T ss_dssp SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S
T ss_pred ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc
Confidence 666776653 222222211 11111112338899994 56666666788888899 4466411222322 10
Q ss_pred ---CCeEEEEEeCCCCEEEEEECCCceEEE
Q 000346 247 ---QPITSVAWLPMLRLLVTLCRDGSLQVW 273 (1630)
Q Consensus 247 ---~~VssVsfSPdG~lLaSgS~DGtIrIW 273 (1630)
..--.|+|.++|++.++ |+-+..++|
T Consensus 219 ~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 24678999999976655 566655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.28 Score=61.37 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=111.7
Q ss_pred EEEcCCCCEEEEEECC------------eEEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 27 AAFHPNQALIAVAIGT------------YIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 27 LaFSPdG~lLasgs~G------------tI~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
++.+|.|-.+|...+. .|+||+.. |+.+.++. .++.|.++.|+.+ ..|++...||.++++|+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCC
Confidence 4556666666665554 48888876 77777777 3389999999876 5566667999999999863
Q ss_pred CcEEEEEcCCCCe-EEeecCC-eEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee---cC-----C--CCCeEE
Q 000346 94 EQSFVLHSPEKKM-ESISVDT-EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK---TD-----L--KKPIVN 161 (1630)
Q Consensus 94 ge~~v~fspdg~~-asgs~Dg-tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il---~g-----H--~~~Its 161 (1630)
. . .|+-.... ...-.+. ....++..+|-.++ ..++ .+.+..-.... ...+.+ .. | ......
T Consensus 111 ~-~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~-~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i 183 (410)
T PF04841_consen 111 E-F--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNN-RFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVI 183 (410)
T ss_pred c-e--eechhhhccccCcccccccccccCCCCEEEE--CCCC-eEEEEeCcccc-chhhccccCCCcccccccccccccc
Confidence 3 2 22211111 0000011 11223333442222 2223 22222211110 000000 00 0 000001
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEE
Q 000346 162 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGI 241 (1630)
Q Consensus 162 LafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~t 241 (1630)
..++.+....+....++.+.+.+-...+. +...+.+. .++.||++++++.-..+|.+.|....-.+. ...
T Consensus 184 ~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~-----~iavSpng~~iAl~t~~g~l~v~ssDf~~~--~~e 253 (410)
T PF04841_consen 184 PLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPII-----KIAVSPNGKFIALFTDSGNLWVVSSDFSEK--LCE 253 (410)
T ss_pred eEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeE-----EEEECCCCCEEEEEECCCCEEEEECcccce--eEE
Confidence 23444444444455556666444332211 22345676 999999999999999999998887654443 222
Q ss_pred eecc-CCCeEEEEEeCCCCEE
Q 000346 242 IQVG-SQPITSVAWLPMLRLL 261 (1630)
Q Consensus 242 L~gH-~~~VssVsfSPdG~lL 261 (1630)
+... ......+.|+-+...+
T Consensus 254 ~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 254 FDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred eecCcCCCCcEEEEECCCcEE
Confidence 3222 3456778887664433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=72.64 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=63.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000346 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t 233 (1630)
.+...|.+++++|+...++.|+.||+|.+||...+....+ +..-..+ .++|||+|..+++|++.|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~-----~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPT-----LIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccce-----EEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4577899999999999999999999999999887644433 3333344 899999999999999999999999875
Q ss_pred C
Q 000346 234 E 234 (1630)
Q Consensus 234 g 234 (1630)
.
T Consensus 331 s 331 (545)
T PF11768_consen 331 S 331 (545)
T ss_pred C
Confidence 4
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.25 Score=61.14 Aligned_cols=226 Identities=14% Similarity=0.079 Sum_probs=125.7
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCCC--CE-E---------EEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDINS--PV-V---------RMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~~--~V-t---------sVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
+..+++++. +.+.-+|..+|+.+...+... .+ . .+.. . +..++.++.++.+..+|.++|+..-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCCccc
Confidence 456666665 789999999999887766321 11 0 1122 2 45677778899999999998875100
Q ss_pred E--------cC---CCCeEEeecCCeE---------EEEEcCC----------------CCEEEEEecCCcEEEEEEccc
Q 000346 100 H--------SP---EKKMESISVDTEV---------HLALTPL----------------QPVVFFGFHRRMSVTVVGTVE 143 (1630)
Q Consensus 100 f--------sp---dg~~asgs~Dgtv---------~L~~spd----------------g~~LaSgs~Dg~tI~IwDl~s 143 (1630)
+ +| ++..+.+..++.+ .+|..+. +..++.++.++ .+..+|..+
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g-~v~a~d~~~ 224 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG-RVSAVLMEQ 224 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC-EEEEEEccC
Confidence 0 00 1111112222221 1222110 12455566677 777778777
Q ss_pred CCccceeeecC--CC--C---CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCC
Q 000346 144 GGRAPTKIKTD--LK--K---PIVNLACHP--RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 144 g~~~~i~il~g--H~--~---~ItsLafSP--dg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg 214 (1630)
+. ....... .. . ....+..+| .+..+++++.+|.+..+|..+++.+....... .. .+.. ++
T Consensus 225 G~--~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~-----~~~~--~~ 294 (394)
T PRK11138 225 GQ--LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VN-----DFAV--DG 294 (394)
T ss_pred Ch--hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-cc-----CcEE--EC
Confidence 63 2211110 00 0 011111222 34567777789999999999998876654321 11 2222 45
Q ss_pred CEEEEEeCCCeEEEEECCCCCceeEEEeecc-CCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 215 EWLFVGDRRGTLLAWDVSIERPSMIGIIQVG-SQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 215 ~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH-~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
..++.++.++.+..+|..+++. +-....- .....+... .+..|+.++.||.|++.|..
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVE--LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcE--EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 6788888899999999998863 2111110 111122222 24567788999999888865
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00037 Score=86.35 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=127.8
Q ss_pred CcEEEEEcC--CCCEEEEEEC-CeEEEEECCCCcEE-EEEc-CC-CCEEEEEEeCCCCCEEEEEE----CCCeEEEEECC
Q 000346 23 QPHEAAFHP--NQALIAVAIG-TYIIEFDTLTGSRI-ASID-IN-SPVVRMAYSPTSGHAVVAIL----EDCTIRSCDFD 92 (1630)
Q Consensus 23 rV~~LaFSP--dG~lLasgs~-GtI~VWDl~tg~~i-~tl~-~~-~~VtsVafSpd~g~lLaSgS----~DGtIrVWDl~ 92 (1630)
.+.|+++.. +..++++|.. |.|-+-.+....-. ..+. ++ .++++++|++-+.++||+|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 567888765 3457888887 88888877644332 3333 44 88999999987578888875 46789999998
Q ss_pred CCcEEEEEcCCCCe-EEe-ecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCC
Q 000346 93 TEQSFVLHSPEKKM-ESI-SVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLP 169 (1630)
Q Consensus 93 tge~~v~fspdg~~-asg-s~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~ 169 (1630)
++-. .|.... .++ ..++.-.+++..+.+.+.+|...+ .+.++|++..- .....-.+..+..+..+| .+.
T Consensus 138 s~lt----vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 138 SLLT----VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccC----CCccccccccccccCccccccccCcchhhcccccc-hhhhhhhhhhh---hhhhhhhhhhcccceecCCCCC
Confidence 7622 222222 112 233444555668888999999998 89999987431 111111245667788888 777
Q ss_pred EEEEEeCCCeEEEEE-cCCC-cEEEEEec-CC----ceeecCcccEEEcCCCC-EEEEEe-CCCeEEEEECCC
Q 000346 170 VLYVAYADGLIRAYN-IHTY-AVHYTLQL-DN----TIKLLGAGAFAFHPTLE-WLFVGD-RRGTLLAWDVSI 233 (1630)
Q Consensus 170 lLaSgS~DGtIrIWD-l~t~-~~i~tL~~-~~----~V~IsGi~sVafSPDg~-~LaSgS-~DGtVrVWDl~t 233 (1630)
++++-+ ||.|.+|| .+.- ..+.++.+ .+ .+. .++|+|... .+++.+ +.++|+.+|+..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~-----~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLF-----ALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCccccee-----eEEeccCCcchhhhhccCcceEEEecccc
Confidence 887665 99999999 3322 22333333 22 366 899999542 344444 467888888773
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.49 Score=57.98 Aligned_cols=241 Identities=14% Similarity=0.132 Sum_probs=113.1
Q ss_pred EEEEcCCCCEEEEEEC--Ce--EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE----
Q 000346 26 EAAFHPNQALIAVAIG--TY--IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---- 96 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~--Gt--I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---- 96 (1630)
.=+|.+||+.|+.+++ |. +.+.|+.+++..+.-.+. .......++++ .+.++-......|+..|+++.+.
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 3467889988888776 33 888899999987766643 22335667788 67766565667888889988876
Q ss_pred --------EEEE--cCCCCeEEee----cCCe----------------------------------------EEEEEcCC
Q 000346 97 --------FVLH--SPEKKMESIS----VDTE----------------------------------------VHLALTPL 122 (1630)
Q Consensus 97 --------~v~f--spdg~~asgs----~Dgt----------------------------------------v~L~~spd 122 (1630)
...| +.++..+.+. .+.. -++.++|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 1222 2223221111 0000 12233454
Q ss_pred CC-EEEEEec---CCcEEEEEEcccCCccceeeecCC--CCCeEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCcEE
Q 000346 123 QP-VVFFGFH---RRMSVTVVGTVEGGRAPTKIKTDL--KKPIVNLACHPRLPVLYVAY-----ADGLIRAYNIHTYAVH 191 (1630)
Q Consensus 123 g~-~LaSgs~---Dg~tI~IwDl~sg~~~~i~il~gH--~~~ItsLafSPdg~lLaSgS-----~DGtIrIWDl~t~~~i 191 (1630)
.+ .|..|.. +...-++|-+.+.. ...+.+..| ...+..=-|.|||..|.--+ .+..|.-+|..++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 44 3444432 22122566665543 222333223 23345557899998765433 3456777888887654
Q ss_pred EEEecCCceeecCcccEEEcCCCCEEEEEeCCC----------------eEEEEECCCCCceeEEEeeccC---------
Q 000346 192 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRG----------------TLLAWDVSIERPSMIGIIQVGS--------- 246 (1630)
Q Consensus 192 ~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DG----------------tVrVWDl~tgk~~lv~tL~gH~--------- 246 (1630)
...... ... .+.-++||++++-=+.|. -|+++++..+.. ..+..|.
T Consensus 278 ~~~~~p-~~~-----H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~---~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 278 RLMEMP-WCS-----HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF---RKLARHDTSWKVLDGD 348 (386)
T ss_dssp EEEEE--SEE-----EEEE-TTSSEEEEEE-------------------EEEEEETTTTEE---EEEEE-------BTTB
T ss_pred EEEeCC-cee-----eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce---eeeeeccCcceeecCC
Confidence 332223 333 566778988765433332 456677776552 2222232
Q ss_pred -C-CeEEEEEeCCCCEEE-EEECCCceEEEEeee
Q 000346 247 -Q-PITSVAWLPMLRLLV-TLCRDGSLQVWKTRV 277 (1630)
Q Consensus 247 -~-~VssVsfSPdG~lLa-SgS~DGtIrIWDl~~ 277 (1630)
. .=-..+|+|||+.++ ++...|...||=+..
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 1 124689999999765 555678777776543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.099 Score=67.71 Aligned_cols=193 Identities=11% Similarity=0.078 Sum_probs=123.1
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCC-eEEEEEcCCCCEEEEEecCCc----EEEEEEcc
Q 000346 68 AYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDT-EVHLALTPLQPVVFFGFHRRM----SVTVVGTV 142 (1630)
Q Consensus 68 afSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dg-tv~L~~spdg~~LaSgs~Dg~----tI~IwDl~ 142 (1630)
+|++. +..+|.|+.||.|.+.+-.-.. .-.|- +.... ...+|.......+++.+.|.- .+++|++.
T Consensus 30 c~~s~-~~~vvigt~~G~V~~Ln~s~~~-~~~fq-------a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 30 CCSSS-TGSVVIGTADGRVVILNSSFQL-IRGFQ-------AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EEcCC-CceEEEeeccccEEEeccccee-eehhe-------ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 46676 8899999999999887742110 01111 11111 223444444467777665552 68999986
Q ss_pred cCC----ccce---eeec----CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc---CCCcEEEEEe--cCCceeecCcc
Q 000346 143 EGG----RAPT---KIKT----DLKKPIVNLACHPRLPVLYVAYADGLIRAYNI---HTYAVHYTLQ--LDNTIKLLGAG 206 (1630)
Q Consensus 143 sg~----~~~i---~il~----gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl---~t~~~i~tL~--~~~~V~IsGi~ 206 (1630)
... ..|. +.+. ....++.+++.|.+-+.+++|-.||.|..+.= +.......+. +..+|+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT----- 175 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT----- 175 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce-----
Confidence 541 1333 1111 12567899999999999999999999998852 2222222333 378888
Q ss_pred cEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 207 sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.+++..++..++-......|.+|.+....+ ....+..|...+.|.++++...-+++++ +..+.+|+..
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p-~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGRTP-SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD 243 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCCCc-ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence 999999988733333356789999884442 4556788888999999998666344433 4478888754
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.043 Score=68.66 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCEEEEEEC---C--eEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEE-EECCCe--EEEEECCCC
Q 000346 23 QPHEAAFHPNQALIAVAIG---T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVA-ILEDCT--IRSCDFDTE 94 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~---G--tI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaS-gS~DGt--IrVWDl~tg 94 (1630)
.+..-+|+|++..++...- + .+.++|+.+++....+...+.-...+|+|| |+.|+. ...||. |.+.|+.++
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD-G~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD-GSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCC-CCEEEEEECCCCCccEEEEcCCCC
Confidence 4566789999998766543 4 299999999987777665556667789999 665554 446665 455566555
Q ss_pred cEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCc--EEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 000346 95 QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 95 e~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~--tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLa 172 (1630)
...- ++........-.++|+|..++..++.+. .|.+++...+ ...+... ....-..-.|+|||++++
T Consensus 273 ~~~~--------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~-~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 273 NLPR--------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTF-SGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred ccee--------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeec-cCCCCcCccCCCCCCEEE
Confidence 4211 1111111124467888988887776542 4555555544 2222222 222222778999999988
Q ss_pred EEeCC-Ce--EEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCC
Q 000346 173 VAYAD-GL--IRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1630)
Q Consensus 173 SgS~D-Gt--IrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D 223 (1630)
..+.. |. |.+.|+.++...+.+....... ..+|.++++.+...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e-----~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTYLNE-----SPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccccCC-----CCCcCCCCceEEEeccC
Confidence 77743 43 6677776665555555544444 66788888887765543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.015 Score=70.04 Aligned_cols=191 Identities=10% Similarity=0.069 Sum_probs=128.1
Q ss_pred CCCEEEEEEC-CeEEEEECCCCc---EEEEEcCC-CCEEEEEEeCCCCCEEEEEEC-CCeEEEEECCCCcE----EEEEc
Q 000346 32 NQALIAVAIG-TYIIEFDTLTGS---RIASIDIN-SPVVRMAYSPTSGHAVVAILE-DCTIRSCDFDTEQS----FVLHS 101 (1630)
Q Consensus 32 dG~lLasgs~-GtI~VWDl~tg~---~i~tl~~~-~~VtsVafSpd~g~lLaSgS~-DGtIrVWDl~tge~----~v~fs 101 (1630)
-..++.+++. |+++.|.-..-. .++.+..| +.|.+++.+-+ +.++.|+++ |..++++|+++-.. .+.+-
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 3568888888 889999865322 23333434 78899999988 888999787 99999999865433 11111
Q ss_pred CCCCeEEeecCCeEEEEEcCCC---CEEEEEe-cCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 102 PEKKMESISVDTEVHLALTPLQ---PVVFFGF-HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 102 pdg~~asgs~Dgtv~L~~spdg---~~LaSgs-~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
| +.+ -|+...| ..++.+. .++ .+.++|-.....+......-|..+|.++.+++-+..+.+....
T Consensus 98 P----------g~a-~wv~skGd~~s~IAVs~~~sg-~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 98 P----------GFA-EWVTSKGDKISLIAVSLFKSG-KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred C----------Cce-EEecCCCCeeeeEEeecccCC-CcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 1 111 2333333 1233333 344 7888887665323334446789999999999999999999999
Q ss_pred CeEEEEEcCC------CcEEEEEecCCceee-----cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 178 GLIRAYNIHT------YAVHYTLQLDNTIKL-----LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 178 GtIrIWDl~t------~~~i~tL~~~~~V~I-----sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
|.|.-|.... .+....++++..... .-..++.|+|++..+.+-+.|..|++++..+++
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 9999998762 122222222111000 012489999999999999999999999999875
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.052 Score=70.35 Aligned_cols=178 Identities=16% Similarity=0.096 Sum_probs=121.6
Q ss_pred CCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEe
Q 000346 32 NQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESI 109 (1630)
Q Consensus 32 dG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asg 109 (1630)
++..++.|+. ..+..+|+.+.+..+..... +.|+-|+.+ ++.+.+|...|+|.+-|.++.+..-.+. +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~-------a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFD-------A 215 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeee-------c
Confidence 3445666665 77999999999888877744 567777764 5689999999999999998776533332 1
Q ss_pred ecCCeEEEEEcCCCCEEEEEec---------CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 000346 110 SVDTEVHLALTPLQPVVFFGFH---------RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL-PVLYVAYADGL 179 (1630)
Q Consensus 110 s~Dgtv~L~~spdg~~LaSgs~---------Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg-~lLaSgS~DGt 179 (1630)
+. +++. .+.-.|+.+++++. |. .|++||++.- ..+.-+.-+.++ .-+.|+|.- ..+++++..|.
T Consensus 216 Hs-~siS-DfDv~GNlLitCG~S~R~~~l~~D~-FvkVYDLRmm--ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 216 HS-GSIS-DFDVQGNLLITCGYSMRRYNLAMDP-FVKVYDLRMM--RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred cc-ccee-eeeccCCeEEEeecccccccccccc-hhhhhhhhhh--hccCCcccccCc-hhhhhcccccceEEEEecccc
Confidence 11 1222 34455667776653 44 6889999876 222222222222 457788853 46888999999
Q ss_pred EEEEE---cCCC-cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEE
Q 000346 180 IRAYN---IHTY-AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230 (1630)
Q Consensus 180 IrIWD---l~t~-~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWD 230 (1630)
..+.| +.+. ..+..+.. ...+. .+++++++..++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~-----~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGIS-----AFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcce-----eEEecCCCceEEEecccCcEeeec
Confidence 99999 4443 22233333 45576 999999999999999999999997
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.59 Score=57.17 Aligned_cols=232 Identities=10% Similarity=0.101 Sum_probs=120.8
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEc-CC-----------------CCEEEEEEeCCCCCEEEEEE-CC
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASID-IN-----------------SPVVRMAYSPTSGHAVVAIL-ED 83 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~-~~-----------------~~VtsVafSpd~g~lLaSgS-~D 83 (1630)
.+....|||+|++++...++.|.+++..++...+.-. +. +.-.++-|||| +++|+... ++
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~ 122 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDE 122 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEEEECC
Confidence 6889999999999999999999999998885443332 31 12356789999 88887765 33
Q ss_pred CeEEEEE---CCCC-c----E-EEE---------------E-cCCCCe--EEee------cCCeEEEEEcCCCCEEEEE-
Q 000346 84 CTIRSCD---FDTE-Q----S-FVL---------------H-SPEKKM--ESIS------VDTEVHLALTPLQPVVFFG- 129 (1630)
Q Consensus 84 GtIrVWD---l~tg-e----~-~v~---------------f-spdg~~--asgs------~Dgtv~L~~spdg~~LaSg- 129 (1630)
..|+.+. .... . . .+. + ...++. +... ......+.|.+++..++..
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 3333332 2111 1 1 000 1 111111 1000 1111455566666623322
Q ss_pred -ecC--CcEEEEEEcccCCccceeee-cCCCCCe---EEEEEc-CCCC-EEEEEeCCCe--EEEEEcCCCcEEEEEe-cC
Q 000346 130 -FHR--RMSVTVVGTVEGGRAPTKIK-TDLKKPI---VNLACH-PRLP-VLYVAYADGL--IRAYNIHTYAVHYTLQ-LD 197 (1630)
Q Consensus 130 -s~D--g~tI~IwDl~sg~~~~i~il-~gH~~~I---tsLafS-Pdg~-lLaSgS~DGt--IrIWDl~t~~~i~tL~-~~ 197 (1630)
+.+ ...+.++|..++ .+.... .....+| ....|. +++. ++.....||. |.+++...+... .+. +.
T Consensus 203 ~nR~q~~~~l~~~d~~tg--~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTG--ETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EETTSTEEEEEEEEECTT--TCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred cccCCCEEEEEEEECCCC--ceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 222 135667777666 332222 2223333 245554 6555 4444556775 455555555533 333 35
Q ss_pred CceeecCcccEEEcCCCCEEE-EEeC----CCeEEEEECC-CCCceeEEEeeccCCCeEEEEEeCCCCEEEEEE
Q 000346 198 NTIKLLGAGAFAFHPTLEWLF-VGDR----RGTLLAWDVS-IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 198 ~~V~IsGi~sVafSPDg~~La-SgS~----DGtVrVWDl~-tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS 265 (1630)
-.|. .-+.|+++++.|+ ++.. ...|..-++. .+. ...+......-..+.|||+|++++-..
T Consensus 280 ~~V~----~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVT----SILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EE----EEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eeec----ccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCceEEEECCCCCEEEEEE
Confidence 5564 1468888876655 4443 2345555666 444 455555444336999999999876544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.8 Score=53.88 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=115.0
Q ss_pred CcEEEEEcCCCCEEEEEEC--Ce----EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCC-----------e
Q 000346 23 QPHEAAFHPNQALIAVAIG--TY----IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC-----------T 85 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--Gt----I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DG-----------t 85 (1630)
.+...++||+|+++|.+.+ |. |+++|+.+|+.+...-....-..+.|.++ ++.|+....|. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d-~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDD-GKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTT-SSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCC-CCEEEEEEeCcccccccCCCCcE
Confidence 4457889999999998755 43 99999999977653211111223999999 77666555332 3
Q ss_pred EEEEECCCCcE--EEEEcCCCCeEEeecCC-eEEEEEcCCCCEEEEEecCC---cEEEEEEcccC---CccceeeecCCC
Q 000346 86 IRSCDFDTEQS--FVLHSPEKKMESISVDT-EVHLALTPLQPVVFFGFHRR---MSVTVVGTVEG---GRAPTKIKTDLK 156 (1630)
Q Consensus 86 IrVWDl~tge~--~v~fspdg~~asgs~Dg-tv~L~~spdg~~LaSgs~Dg---~tI~IwDl~sg---~~~~i~il~gH~ 156 (1630)
|+.|.+.+... .+.|..... .. .+.+..++++.+++..+..+ ..+.+.+...+ . .....+..+.
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~~~~~l~~~~ 276 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDE------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-AKPKLLSPRE 276 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTC------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESS
T ss_pred EEEEECCCChHhCeeEEeecCC------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-CCcEEEeCCC
Confidence 77888776643 355543211 11 35667788888776544332 25777787764 2 2333333233
Q ss_pred CCe-EEEEEcCCCCEEEEEe---CCCeEEEEEcCCCc---EE-EEEecCCceeecCcccEEEcCCCCEEEEEe-CCC--e
Q 000346 157 KPI-VNLACHPRLPVLYVAY---ADGLIRAYNIHTYA---VH-YTLQLDNTIKLLGAGAFAFHPTLEWLFVGD-RRG--T 225 (1630)
Q Consensus 157 ~~I-tsLafSPdg~lLaSgS---~DGtIrIWDl~t~~---~i-~tL~~~~~V~IsGi~sVafSPDg~~LaSgS-~DG--t 225 (1630)
..+ ..+... .+.+++... ..+.|...++.... .. ..+.+...+. -..+...+.+|+... .++ .
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-----l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-----LEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-----EEEEEEETTEEEEEEEETTEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-----EEEEEEECCEEEEEEEECCccE
Confidence 333 334333 444444333 34567777777654 22 2233333332 233444455555544 344 5
Q ss_pred EEEEECCCCCceeEEEeec-cCCCeEEEEEeCCCC
Q 000346 226 LLAWDVSIERPSMIGIIQV-GSQPITSVAWLPMLR 259 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~g-H~~~VssVsfSPdG~ 259 (1630)
|++||+..+.. ...+.. -.+.|..+...++++
T Consensus 351 l~v~~~~~~~~--~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 351 LRVYDLDDGKE--SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEETT-TEE--EEEEESSSSSEEEEEES-TT-S
T ss_pred EEEEECCCCcE--EeeecCCcceEEeccCCCCCCC
Confidence 78889883222 222222 233455555555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.8 Score=53.72 Aligned_cols=239 Identities=18% Similarity=0.199 Sum_probs=148.9
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.+..+...+++..+.+... +.+...+............. ..-..++.++.+.+.+++...+..|.+.|..+....-
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~- 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG- 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence 5678889999976666655 43555555522222222322 4456778888844466777677999999966554411
Q ss_pred EcCCCCeEEeecCCeEEEEEcCCCCEEEEEec---CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFH---RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY- 175 (1630)
Q Consensus 100 fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~---Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS- 175 (1630)
..+-| .....+.+.+++..++.+.. +. ++.+.|..+. ..+.....-..+ ..++++|+|..++++.
T Consensus 111 ~~~vG-------~~P~~~~~~~~~~~vYV~n~~~~~~-~vsvid~~t~--~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~ 179 (381)
T COG3391 111 SIPVG-------LGPVGLAVDPDGKYVYVANAGNGNN-TVSVIDAATN--KVTATIPVGNTP-TGVAVDPDGNKVYVTNS 179 (381)
T ss_pred Eeeec-------cCCceEEECCCCCEEEEEecccCCc-eEEEEeCCCC--eEEEEEecCCCc-ceEEECCCCCeEEEEec
Confidence 11111 13355677777766666555 45 8888887776 444443322234 8899999999776665
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCcee-ecCcccEEEcCCCCEEEEEeCC---CeEEEEECCCCCceeEEE-eeccCCCeE
Q 000346 176 ADGLIRAYNIHTYAVHYTLQLDNTIK-LLGAGAFAFHPTLEWLFVGDRR---GTLLAWDVSIERPSMIGI-IQVGSQPIT 250 (1630)
Q Consensus 176 ~DGtIrIWDl~t~~~i~tL~~~~~V~-IsGi~sVafSPDg~~LaSgS~D---GtVrVWDl~tgk~~lv~t-L~gH~~~Vs 250 (1630)
.++.|.+.|..+....+ -.....+. ..+.+.+.++|+|.++.+.... +.+...|..++.. ... .........
T Consensus 180 ~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v--~~~~~~~~~~~~~ 256 (381)
T COG3391 180 DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV--TATDLPVGSGAPR 256 (381)
T ss_pred CCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE--EEeccccccCCCC
Confidence 78999999977665553 11011110 0123478999999977766554 5888889888762 222 111111456
Q ss_pred EEEEeCCCCEEEEEECC-CceEEEEee
Q 000346 251 SVAWLPMLRLLVTLCRD-GSLQVWKTR 276 (1630)
Q Consensus 251 sVsfSPdG~lLaSgS~D-GtIrIWDl~ 276 (1630)
.+..+|+|..+.+.... +.+.+-|..
T Consensus 257 ~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 257 GVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred ceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 78999999988877544 677777655
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.23 Score=62.32 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=120.7
Q ss_pred EEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEE---CC-CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEE
Q 000346 44 IIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAIL---ED-CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLA 118 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS---~D-GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~ 118 (1630)
+.+-|.+ |.....+... ..+..-+|+|+ +..++-.+ .. ..+.++|+++++.....+-.+ ....-.
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g--------~~~~P~ 244 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG--------NNGAPA 244 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeeccCC--------ccCCcc
Confidence 6666666 6666666644 78888999999 76655443 22 358999998876522222111 112335
Q ss_pred EcCCCCEEEEEec-CC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEEcCCCcEEEE
Q 000346 119 LTPLQPVVFFGFH-RR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY-ADG--LIRAYNIHTYAVHYT 193 (1630)
Q Consensus 119 ~spdg~~LaSgs~-Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS-~DG--tIrIWDl~t~~~i~t 193 (1630)
++|+|..|+.+.. ++ ..|.+.|+..+ ...+ +....+.-..-.|+|||+.++..+ ..| .|.++|.+.....+.
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~--~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGK--NLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCC--ccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 6677765554432 22 25666776665 3222 332233334678999999887766 334 466677776665333
Q ss_pred EecCCceeecCcccEEEcCCCCEEEEEeCC-Ce--EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC
Q 000346 194 LQLDNTIKLLGAGAFAFHPTLEWLFVGDRR-GT--LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 194 L~~~~~V~IsGi~sVafSPDg~~LaSgS~D-Gt--VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG 268 (1630)
......-. ...|+|||++|+..+.. |. |.+.|+.++.. .+.+. +......-+|.++|..+...+..+
T Consensus 322 T~~~~~~~-----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 322 TFSGGGNS-----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred eccCCCCc-----CccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 33322222 67899999999887743 43 66667766552 33332 344455677888888776655433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.9 Score=52.29 Aligned_cols=205 Identities=15% Similarity=0.111 Sum_probs=118.4
Q ss_pred CcEEEEEcCCCCEEEEEEC---CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECC-CCcE--
Q 000346 23 QPHEAAFHPNQALIAVAIG---TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFD-TEQS-- 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~---GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~-tge~-- 96 (1630)
..+.++++.||+++++..- -.|.|-|+..++.+.++...+...-.-+- ..-+.+-+.||++....++ .|+.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~---~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG---NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE---TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC---CCceEEEecCCceEEEEECCCCCEeE
Confidence 4456789999999998876 33999999999999888754433332222 3457788899999888887 4443
Q ss_pred --EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeec--------CC--CCCeEEEEE
Q 000346 97 --FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT--------DL--KKPIVNLAC 164 (1630)
Q Consensus 97 --~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~--------gH--~~~ItsLaf 164 (1630)
.-.|.++...+.. .-.....+..+++.+..+ .|+-.|+....-.....+. .+ .+.-.-+++
T Consensus 173 ~~t~~F~~~~dp~f~------~~~~~~~~~~~~F~Sy~G-~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFE------HPAYSRDGGRLYFVSYEG-NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp EEEEESSTTTS-B-S--------EEETTTTEEEEEBTTS-EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred eeccccCCCCccccc------ccceECCCCeEEEEecCC-EEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 2234443322000 001112223333344444 4444444333100111110 00 112234778
Q ss_pred cCCCCEEEEEeC---C-------CeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCC-CEEEEEe-CCCeEEEEECC
Q 000346 165 HPRLPVLYVAYA---D-------GLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL-EWLFVGD-RRGTLLAWDVS 232 (1630)
Q Consensus 165 SPdg~lLaSgS~---D-------GtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg-~~LaSgS-~DGtVrVWDl~ 232 (1630)
|+..+.|++--. + ..|.++|+.+++.+..+.....+. ++..+.|. ++|++.+ .++.+.+||..
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~-----Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID-----SIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES-----EEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc-----eEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 876665555321 1 148899999999999998766777 88888865 4666554 57999999999
Q ss_pred CCCceeEEEeec
Q 000346 233 IERPSMIGIIQV 244 (1630)
Q Consensus 233 tgk~~lv~tL~g 244 (1630)
+++. ++++..
T Consensus 321 tGk~--~~~~~~ 330 (342)
T PF06433_consen 321 TGKL--VRSIEQ 330 (342)
T ss_dssp T--E--EEEE--
T ss_pred CCcE--Eeehhc
Confidence 9984 655543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.1 Score=51.56 Aligned_cols=220 Identities=18% Similarity=0.157 Sum_probs=118.9
Q ss_pred EEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE-EEEEcC
Q 000346 26 EAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVLHSP 102 (1630)
Q Consensus 26 ~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~-~v~fsp 102 (1630)
+-.|.++...|+-+.- +.|.-|+..+++.. .+...+.+.++..... +..|+++.. -+++++.+++.. .....+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDA-GGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecC-CCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 3468888886655554 55999999877643 3443444555555444 455555533 355666655544 221111
Q ss_pred C-CCeEEeecCCeEEEEEcCCCCEEEEEec-----------CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCE
Q 000346 103 E-KKMESISVDTEVHLALTPLQPVVFFGFH-----------RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 103 d-g~~asgs~Dgtv~L~~spdg~~LaSgs~-----------Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~l 170 (1630)
. +.......|+ ...++|.+.+.... -+ .|+.+|. .+ ..++...+|-..-+.++||||++.
T Consensus 105 ~~~~~~~r~ND~----~v~pdG~~wfgt~~~~~~~~~~~~~~G-~lyr~~p-~g--~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDG----VVDPDGRIWFGDMGYFDLGKSEERPTG-SLYRVDP-DG--GVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCce----eEcCCCCEEEeCCCccccCccccCCcc-eEEEEcC-CC--CEEEeecCcEEecCceEECCCCCE
Confidence 1 1111111111 22233332222111 12 2333333 23 445555554445578999999988
Q ss_pred EEEEeC-CCeEEEEEcCC--C----cE-EEEEec-CCceeecCcccEEEcCCCCEEEEEeCCC-eEEEEECCCCCceeEE
Q 000346 171 LYVAYA-DGLIRAYNIHT--Y----AV-HYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRG-TLLAWDVSIERPSMIG 240 (1630)
Q Consensus 171 LaSgS~-DGtIrIWDl~t--~----~~-i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DG-tVrVWDl~tgk~~lv~ 240 (1630)
|+.+.. .+.|.-|++.. + +. ...+.. .+.-- .++...+|.+.+++..+| .|.+|+.. ++. +.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD-----G~~vDadG~lw~~a~~~g~~v~~~~pd-G~l--~~ 248 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD-----GMAVDADGNLWVAAVWGGGRVVRFNPD-GKL--LG 248 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC-----ceEEeCCCCEEEecccCCceEEEECCC-CcE--EE
Confidence 877764 47788887752 1 11 111111 22222 566777888775555454 89999988 774 66
Q ss_pred EeeccCCCeEEEEEe-CCCCEEEEEE
Q 000346 241 IIQVGSQPITSVAWL-PMLRLLVTLC 265 (1630)
Q Consensus 241 tL~gH~~~VssVsfS-PdG~lLaSgS 265 (1630)
.+..+...+++++|- ++.+.|...+
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEe
Confidence 666666788889985 4555444333
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.7 Score=52.33 Aligned_cols=212 Identities=16% Similarity=0.084 Sum_probs=119.6
Q ss_pred eEEEEECCCCcEEEEEc--CCCCEEEEEEeC---C---CCCEEEEEEC----------CCeEEEEECCCC-----cEEEE
Q 000346 43 YIIEFDTLTGSRIASID--INSPVVRMAYSP---T---SGHAVVAILE----------DCTIRSCDFDTE-----QSFVL 99 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~--~~~~VtsVafSp---d---~g~lLaSgS~----------DGtIrVWDl~tg-----e~~v~ 99 (1630)
.|++.|..+.+.+.++. .+..+.+++... + ...+|+.|.. .|.|.++++... +....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 58899999998888877 335566655432 1 1467777762 288999998774 22111
Q ss_pred EcCCCCeEEeecCC-eEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceee-ecCCCCCeEEEEEcCCCCEEEEEeCC
Q 000346 100 HSPEKKMESISVDT-EVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKI-KTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 100 fspdg~~asgs~Dg-tv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~i-l~gH~~~ItsLafSPdg~lLaSgS~D 177 (1630)
+. ...++ ...+... . ..++.+.+ . .|.+|++.... ..... .......+.++... ++++++|...
T Consensus 83 ~~-------~~~~g~V~ai~~~-~-~~lv~~~g-~-~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~ 148 (321)
T PF03178_consen 83 HS-------TEVKGPVTAICSF-N-GRLVVAVG-N-KLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF--KNYILVGDAM 148 (321)
T ss_dssp EE-------EEESS-EEEEEEE-T-TEEEEEET-T-EEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE--TTEEEEEESS
T ss_pred EE-------EeecCcceEhhhh-C-CEEEEeec-C-EEEEEEccCcc-cchhhheecceEEEEEEecc--ccEEEEEEcc
Confidence 11 11122 2233333 3 34444444 4 68888887773 12221 12223466777665 5599999988
Q ss_pred CeEEEEEcCC-CcEEEEEec---CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC------Cc-eeEEEeecc-
Q 000346 178 GLIRAYNIHT-YAVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE------RP-SMIGIIQVG- 245 (1630)
Q Consensus 178 GtIrIWDl~t-~~~i~tL~~---~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg------k~-~lv~tL~gH- 245 (1630)
..+.++..+. ...+..+.. ..++. ++.|-++++.++++..+|.+.++..... .. .+.....-|
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~-----~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l 223 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVT-----AAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL 223 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEE-----EEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEE-----EEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence 8888775543 222333322 44565 8888866679999999999999977631 11 122222222
Q ss_pred CCCeEEE---EEeCC--C------CEEEEEECCCceEEE
Q 000346 246 SQPITSV---AWLPM--L------RLLVTLCRDGSLQVW 273 (1630)
Q Consensus 246 ~~~VssV---sfSPd--G------~lLaSgS~DGtIrIW 273 (1630)
...|+++ ++.|. + ..++.++.+|.|.+.
T Consensus 224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 3567776 44441 2 248888899998743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.81 Score=55.03 Aligned_cols=140 Identities=13% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCEEEEEEC-----------CeEEEEECCCC----cEEEE---EcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCC
Q 000346 33 QALIAVAIG-----------TYIIEFDTLTG----SRIAS---IDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTE 94 (1630)
Q Consensus 33 G~lLasgs~-----------GtI~VWDl~tg----~~i~t---l~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tg 94 (1630)
.++|++|.. |.|.++++... ..+.. .+..++|++++-.. +. |+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCc
Confidence 567887754 56999999874 22222 22458999998873 44 44443 479999998777
Q ss_pred c-E-EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeee-cCCCCCeEEEEEcCCCCEE
Q 000346 95 Q-S-FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK-TDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 95 e-~-~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il-~gH~~~ItsLafSPdg~lL 171 (1630)
+ . ..++... .-....+... +++++.|+... .+.++.+..........- .....+++++.|-++++.+
T Consensus 118 ~~l~~~~~~~~-------~~~i~sl~~~--~~~I~vgD~~~-sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 118 KTLLKKAFYDS-------PFYITSLSVF--KNYILVGDAMK-SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp SSEEEEEEE-B-------SSSEEEEEEE--TTEEEEEESSS-SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEE
T ss_pred ccchhhheecc-------eEEEEEEecc--ccEEEEEEccc-CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEE
Confidence 6 3 2222110 1122333333 55788887766 677665554321222222 2335678999998666799
Q ss_pred EEEeCCCeEEEEEcC
Q 000346 172 YVAYADGLIRAYNIH 186 (1630)
Q Consensus 172 aSgS~DGtIrIWDl~ 186 (1630)
+++..+|.+.++...
T Consensus 188 i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTSEEEEEEE-
T ss_pred EEEcCCCeEEEEEEC
Confidence 999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=3.2 Score=51.50 Aligned_cols=217 Identities=21% Similarity=0.234 Sum_probs=144.2
Q ss_pred CcEEEEEcCCCCEEEEEEC--CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEEC---CCeEEEEECCCCcEE
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE---DCTIRSCDFDTEQSF 97 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~--GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~---DGtIrVWDl~tge~~ 97 (1630)
...+++.++.+..+++... +.|.+.|..+.+.............++++++ ++.+..+.. ++++.+.|..++...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCC-CCEEEEEecccCCceEEEEeCCCCeEE
Confidence 5678999999996666663 7799999888888877774447788999999 544444443 688888888777654
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcccee-e---ecCCCCCeEEEEEcCCCCEEEE
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK-I---KTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~-i---l~gH~~~ItsLafSPdg~lLaS 173 (1630)
.. .+.|. .-..+.+.|++..++....+...|.+.|.... ...+ . ...-...-..+.++|++..+.+
T Consensus 154 ~~-~~vG~-------~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 154 AT-IPVGN-------TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred EE-EecCC-------CcceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceeccccccccccCCCCceEEECCCCCEEEE
Confidence 33 33322 11667888888877666633338899996554 2221 0 0111233467899999997776
Q ss_pred EeCC---CeEEEEEcCCCcEEEE-EecCC-ceeecCcccEEEcCCCCEEEEEeC-CCeEEEEECCCCCceeEEEeeccC-
Q 000346 174 AYAD---GLIRAYNIHTYAVHYT-LQLDN-TIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIERPSMIGIIQVGS- 246 (1630)
Q Consensus 174 gS~D---GtIrIWDl~t~~~i~t-L~~~~-~V~IsGi~sVafSPDg~~LaSgS~-DGtVrVWDl~tgk~~lv~tL~gH~- 246 (1630)
.... +.+...|..++..... ..... .-. .+..+|+|.++.+... .+.+.+.|..+... ......+.
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~-----~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v--~~~~~~~~~ 296 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPR-----GVAVDPAGKAAYVANSQGGTVSVIDGATDRV--VKTGPTGNE 296 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCC-----ceeECCCCCEEEEEecCCCeEEEEeCCCCce--eeeeccccc
Confidence 6644 5899999988877665 22222 334 7899999999988854 48899999887662 43333322
Q ss_pred --CCeEEEEEeCC
Q 000346 247 --QPITSVAWLPM 257 (1630)
Q Consensus 247 --~~VssVsfSPd 257 (1630)
..+..+.+.+.
T Consensus 297 ~~~~~~~~~~~~~ 309 (381)
T COG3391 297 ALGEPVSIAISPL 309 (381)
T ss_pred ccccceeccceee
Confidence 23455555553
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.021 Score=43.16 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=32.9
Q ss_pred EEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 566778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.024 Score=67.88 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=75.9
Q ss_pred EEEEEcccCCccceeeecCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCC
Q 000346 136 VTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 136 I~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~-lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg 214 (1630)
+++.+..+- +....+.+|...|++++|+|... ++..++.+.+|+|.|+++..++.++...+.++ +++|+-|.
T Consensus 175 v~~l~~~~f--kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~w-----SC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDF--KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIW-----SCCWDLDE 247 (463)
T ss_pred eEEeccCCc--chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCce-----eeeeccCC
Confidence 344444444 34556778889999999999776 78899999999999999998888887778898 99999855
Q ss_pred -CEEEEEeCCCeEEEEECCCCC
Q 000346 215 -EWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 215 -~~LaSgS~DGtVrVWDl~tgk 235 (1630)
++|+.|...|.|.|||++..+
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cceeEEeccCceEEEEEccCCC
Confidence 567788889999999999754
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.22 Score=66.00 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=90.7
Q ss_pred CCEEEEE-ECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcC-----CCCEEEEEecCCcEEEEEEcccCCcc
Q 000346 74 GHAVVAI-LEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTP-----LQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1630)
Q Consensus 74 g~lLaSg-S~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~sp-----dg~~LaSgs~Dg~tI~IwDl~sg~~~ 147 (1630)
.++|+.. .....|+-.|+++|+..-.|.-+.... ...+.-.. +....+.|-++. .+..||.+-...+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~------v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP------VVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNK 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc------eeEecccccccccCCCceEEEECCC-ceEEeccCCCCCc
Confidence 4444443 356789999999999866666332210 11111100 112345566666 7899998865323
Q ss_pred ceeee---cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCC
Q 000346 148 PTKIK---TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1630)
Q Consensus 148 ~i~il---~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~D 223 (1630)
++..- ........|++-+.+| +||+|+.+|.||+||--..+....+.+ ..+|. .|+.+.||+||++.+ +
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~-----~iDvt~DGkwilaTc-~ 638 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPII-----GIDVTADGKWILATC-K 638 (794)
T ss_pred eeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCee-----EEEecCCCcEEEEee-c
Confidence 32110 1123456677766555 789999999999999443344455556 78888 999999999998877 5
Q ss_pred CeEEEEEC
Q 000346 224 GTLLAWDV 231 (1630)
Q Consensus 224 GtVrVWDl 231 (1630)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 56666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.87 Score=53.13 Aligned_cols=239 Identities=15% Similarity=0.086 Sum_probs=128.1
Q ss_pred CCCCcEEEEEcCCCCE-EEEEEC-Ce-EEEEECCCCcEEEEEc-CCC--CEEEEEEeCCCCCEEEEEECC-----CeEEE
Q 000346 20 KPLQPHEAAFHPNQAL-IAVAIG-TY-IIEFDTLTGSRIASID-INS--PVVRMAYSPTSGHAVVAILED-----CTIRS 88 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~l-Lasgs~-Gt-I~VWDl~tg~~i~tl~-~~~--~VtsVafSpd~g~lLaSgS~D-----GtIrV 88 (1630)
-|.+.+.|+|||..+. ++.+-. |+ ..++|.++.+...++. ..+ ---.-.||+| |.+|...-.| |.|-|
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~d-G~~LYATEndfd~~rGViGv 144 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPD-GRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCC-CcEEEeecCCCCCCCceEEE
Confidence 3557889999997654 566666 88 9999999888766665 221 1223469999 9998887654 67999
Q ss_pred EECCCCcE-------------EEEEcCCCCeEEeecCCeEEEEEcCCCC--EEEEEecCCcEEEEEEcccCCccceeeec
Q 000346 89 CDFDTEQS-------------FVLHSPEKKMESISVDTEVHLALTPLQP--VVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1630)
Q Consensus 89 WDl~tge~-------------~v~fspdg~~asgs~Dgtv~L~~spdg~--~LaSgs~Dg~tI~IwDl~sg~~~~i~il~ 153 (1630)
||.+.+-. .+.+.+||+.+.....++ -.+|+-. .+=..+..- ++.+.|..++......++.
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGI---ethpdfgR~~lNldsMeP-Slvlld~atG~liekh~Lp 220 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGI---ETHPDFGRTELNLDSMEP-SLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCCce---ecccccCccccchhhcCc-cEEEEeccccchhhhccCc
Confidence 99874421 444555555511111111 1111110 000011112 4455555555211122222
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEEcCCCcEEEEEec--------CCceeecCcccEEEcCCCCEEE
Q 000346 154 --DLKKPIVNLACHPRLPVLYVAYADGL-----IRAYNIHTYAVHYTLQL--------DNTIKLLGAGAFAFHPTLEWLF 218 (1630)
Q Consensus 154 --gH~~~ItsLafSPdg~lLaSgS~DGt-----IrIWDl~t~~~i~tL~~--------~~~V~IsGi~sVafSPDg~~La 218 (1630)
.+.-.|..++..+||..++-+-..|. -.+=-...++.+.-+.. .+.| .+++.+.+..+++
T Consensus 221 ~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi-----gsiA~n~~~glV~ 295 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI-----GSIAANRRDGLVA 295 (366)
T ss_pred hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh-----hheeecccCCeEE
Confidence 34566888888888876654432221 11111123333333332 1223 4788887666666
Q ss_pred EEe-CCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 219 VGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 219 SgS-~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
..+ ..+...+||..++.. +..-. -..+.. .-+...-++..|.+|.+.++.
T Consensus 296 lTSP~GN~~vi~da~tG~v--v~~a~--l~daaG--va~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAV--VSEAA--LPDAAG--VAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EecCCCCeEEEEEcCCCcE--Eeccc--cccccc--ceeccCceEEecCCceEEecc
Confidence 555 455678999999983 21111 011112 223334455667788887773
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.37 Score=55.31 Aligned_cols=136 Identities=16% Similarity=0.094 Sum_probs=90.8
Q ss_pred CCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceee
Q 000346 123 QPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKL 202 (1630)
Q Consensus 123 g~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~I 202 (1630)
..+++.|++.+ .+...|..++......++ ...|-+-+.- -|++++.|+..|.+++.+.++|...+.+.....|.
T Consensus 23 kT~v~igSHs~-~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk- 96 (354)
T KOG4649|consen 23 KTLVVIGSHSG-IVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK- 96 (354)
T ss_pred ceEEEEecCCc-eEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc-
Confidence 45677777777 777788777731111111 2233222222 46789999999999999999998888887755554
Q ss_pred cCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC-CCCEEEEEECCCce
Q 000346 203 LGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGSL 270 (1630)
Q Consensus 203 sGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP-dG~lLaSgS~DGtI 270 (1630)
+.....+++..+.+|+.|++.+..|.++..+ +...+.....-.+-+..| ++.+.+ ++..|.|
T Consensus 97 ---~~a~~d~~~glIycgshd~~~yalD~~~~~c--VykskcgG~~f~sP~i~~g~~sly~-a~t~G~v 159 (354)
T KOG4649|consen 97 ---VRAQCDFDGGLIYCGSHDGNFYALDPKTYGC--VYKSKCGGGTFVSPVIAPGDGSLYA-AITAGAV 159 (354)
T ss_pred ---cceEEcCCCceEEEecCCCcEEEecccccce--EEecccCCceeccceecCCCceEEE-EeccceE
Confidence 3567788999999999999999999998876 555544444334445556 444443 3444544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.40 E-value=5.5 Score=48.39 Aligned_cols=237 Identities=18% Similarity=0.152 Sum_probs=128.4
Q ss_pred EEEEEcCCCCEEEEEEC-----------CeEEEEECCCCcEEEEEc-CCC-CE------EEEEEeCCCCCEEEEEE--CC
Q 000346 25 HEAAFHPNQALIAVAIG-----------TYIIEFDTLTGSRIASID-INS-PV------VRMAYSPTSGHAVVAIL--ED 83 (1630)
Q Consensus 25 ~~LaFSPdG~lLasgs~-----------GtI~VWDl~tg~~i~tl~-~~~-~V------tsVafSpd~g~lLaSgS--~D 83 (1630)
-.+..+|+++.++++.. +.|.+||..|-.....+. ... +. +...++.+ ++++.... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~d-gk~~~V~N~TPa 117 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSAD-GKFLYVQNFTPA 117 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TT-SSEEEEEEESSS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccC-CcEEEEEccCCC
Confidence 35778999999887532 239999999998888776 222 22 23455555 55555433 22
Q ss_pred CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccce----eeecCCCCCe
Q 000346 84 CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT----KIKTDLKKPI 159 (1630)
Q Consensus 84 GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i----~il~gH~~~I 159 (1630)
.+|.|-|+..++..-.. ..-+...+.-... .-+.+-|.|| ++.-..+...+ +.. ..+..-..++
T Consensus 118 ~SVtVVDl~~~kvv~ei---------~~PGC~~iyP~~~-~~F~~lC~DG-sl~~v~Ld~~G-k~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEI---------DTPGCWLIYPSGN-RGFSMLCGDG-SLLTVTLDADG-KEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEEEEETTTTEEEEEE---------EGTSEEEEEEEET-TEEEEEETTS-CEEEEEETSTS-SEEEEEEEESSTTTS-B
T ss_pred CeEEEEECCCCceeeee---------cCCCEEEEEecCC-CceEEEecCC-ceEEEEECCCC-CEeEeeccccCCCCccc
Confidence 34566666555431111 1223333333332 2355666666 55555555332 211 1222222233
Q ss_pred E-EEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEE--EEec-------CCceeecCcccEEEcCCCCEEEEEeC-------
Q 000346 160 V-NLACHPRLPVLYVAYADGLIRAYNIHTYAVHY--TLQL-------DNTIKLLGAGAFAFHPTLEWLFVGDR------- 222 (1630)
Q Consensus 160 t-sLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~--tL~~-------~~~V~IsGi~sVafSPDg~~LaSgS~------- 222 (1630)
. .-++...+..++--+.+|.|+-.|+....... .+.. .++- ..|-.-+++++..+.|++.-.
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr-PGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR-PGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE-E-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC-CcceeeeeeccccCeEEEEecCCCCCCc
Confidence 2 33445555556667788999999888665332 2221 1221 122336899986666555422
Q ss_pred -CCe--EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCC-EEEEEE-CCCceEEEEeeee
Q 000346 223 -RGT--LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLC-RDGSLQVWKTRVI 278 (1630)
Q Consensus 223 -DGt--VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~-lLaSgS-~DGtIrIWDl~~~ 278 (1630)
|+. |-++|+.+++. +..+.. ...+.+|..+.+.+ +|++.+ .++.+.|||..+.
T Consensus 265 KdpgteVWv~D~~t~kr--v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKR--VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TS-EEEEEEEETTTTEE--EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCCceEEEEEECCCCeE--EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 333 55558888774 666653 23677999998765 665554 5789999998643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=3.1 Score=48.16 Aligned_cols=144 Identities=15% Similarity=0.060 Sum_probs=96.0
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeec
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISV 111 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~ 111 (1630)
..+++.|++ +.+.--|..+|..+..-....++-+-+.- - |++++.|...|.+++.++++|+.+-.|.-.+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~------ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET------ 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeehhh------
Confidence 456777777 77888899999987766555566554444 2 67899999999999999999965433331111
Q ss_pred CCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 000346 112 DTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188 (1630)
Q Consensus 112 Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~ 188 (1630)
-.++-...+++..+..|++|+ +.+..|..+. .|+...+.....-.+-+..|-...|+.+...|.+.--...++
T Consensus 95 -vk~~a~~d~~~glIycgshd~-~~yalD~~~~--~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 -VKVRAQCDFDGGLIYCGSHDG-NFYALDPKTY--GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred -hccceEEcCCCceEEEecCCC-cEEEeccccc--ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 113334567788999999999 8999998877 566655443333344555663334555556666655555544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.044 Score=41.36 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=32.9
Q ss_pred cceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000346 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYN 184 (1630)
Q Consensus 147 ~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWD 184 (1630)
.+...+..|...|.++.|++++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34555667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.01 E-value=20 Score=48.30 Aligned_cols=115 Identities=11% Similarity=0.004 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCC--C----CEEEEEeCCCeEEE
Q 000346 157 KPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPT--L----EWLFVGDRRGTLLA 228 (1630)
Q Consensus 157 ~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPD--g----~~LaSgS~DGtVrV 228 (1630)
..++....+-+...++.++.++.+...++........-++ +..|. |++++|- + +.+++|..+..+.+
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~eva-----CLDisp~~d~~~~s~~~aVG~Ws~~~~~ 562 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVA-----CLDISPLGDAPNKSRLLAVGLWSDISMI 562 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeE-----EEecccCCCCCCcceEEEEEeecceEEE
Confidence 4455555555666778888778888778776664333333 67787 9999984 2 37888887766555
Q ss_pred EECC-CCCceeEEEeecc--CCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 229 WDVS-IERPSMIGIIQVG--SQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 229 WDl~-tgk~~lv~tL~gH--~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
.-.. +....+...+.+. ...|.-..+-.|..+|.++..||.+.-+-+.
T Consensus 563 l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 563 LTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 4333 2221111112211 1334444555678899999999998777665
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.4 Score=54.29 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=121.2
Q ss_pred CEEEEEEC-CeEEEEECCCCcEEEEEcCCCC------E-EEEEEeCCCCCEEEEEE---------CCCeEEEEECCCCcE
Q 000346 34 ALIAVAIG-TYIIEFDTLTGSRIASIDINSP------V-VRMAYSPTSGHAVVAIL---------EDCTIRSCDFDTEQS 96 (1630)
Q Consensus 34 ~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~------V-tsVafSpd~g~lLaSgS---------~DGtIrVWDl~tge~ 96 (1630)
..+++++. +.|.-+|.++|+.+..++.... + .+..+.. ..++.++ .++.|..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK---KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC---CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 45666655 8899999999999888774322 1 1222322 3444443 367899999999987
Q ss_pred EEEEcCCCC--e-E---------EeecCCe--EEEEEcCCCCEEEEEecCC-----------------cEEEEEEcccCC
Q 000346 97 FVLHSPEKK--M-E---------SISVDTE--VHLALTPLQPVVFFGFHRR-----------------MSVTVVGTVEGG 145 (1630)
Q Consensus 97 ~v~fspdg~--~-a---------sgs~Dgt--v~L~~spdg~~LaSgs~Dg-----------------~tI~IwDl~sg~ 145 (1630)
.-.+.-... . . ....... -.....+.+..++.++.++ ..|.-+|..++.
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 333321100 0 0 0000000 0112233345566665432 157888888883
Q ss_pred ccceeee--cCCCCCe----EEEEEc----CCCC---EEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcC
Q 000346 146 RAPTKIK--TDLKKPI----VNLACH----PRLP---VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP 212 (1630)
Q Consensus 146 ~~~i~il--~gH~~~I----tsLafS----Pdg~---lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSP 212 (1630)
..-.+ ..|.... ....+. -++. .+++++.+|.+...|.++++.+...... .. .++.+|
T Consensus 268 --~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~-----~~~~~~ 338 (488)
T cd00216 268 --VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQ-----PMAYDP 338 (488)
T ss_pred --EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--cc-----ccccCC
Confidence 33322 1121100 000111 1333 5778889999999999999998876531 01 222333
Q ss_pred CCCEEEEE------------------eCCCeEEEEECCCCCceeEEEeecc--C------CCeEEEEEeCCCCEEEEEEC
Q 000346 213 TLEWLFVG------------------DRRGTLLAWDVSIERPSMIGIIQVG--S------QPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 213 Dg~~LaSg------------------S~DGtVrVWDl~tgk~~lv~tL~gH--~------~~VssVsfSPdG~lLaSgS~ 266 (1630)
..++.+ ..+|.+...|..+++. +-..... . .+...-...-.+.+++.++.
T Consensus 339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~ 414 (488)
T cd00216 339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV--VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA 414 (488)
T ss_pred --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE--eeEeeCCccccccccCCcccCcceEecCCeEEEECC
Confidence 222221 2356788888888764 2222111 0 11111111124568888899
Q ss_pred CCceEEEEeeee
Q 000346 267 DGSLQVWKTRVI 278 (1630)
Q Consensus 267 DGtIrIWDl~~~ 278 (1630)
||.|+.+|..+.
T Consensus 415 dG~l~ald~~tG 426 (488)
T cd00216 415 DGYFRAFDATTG 426 (488)
T ss_pred CCeEEEEECCCC
Confidence 999999987643
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.87 E-value=4.9 Score=50.42 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=89.5
Q ss_pred CCcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEc---CCCCE-----EEEEEeCCCCCEEEEEECCCeEEEEECCC
Q 000346 22 LQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASID---INSPV-----VRMAYSPTSGHAVVAILEDCTIRSCDFDT 93 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~---~~~~V-----tsVafSpd~g~lLaSgS~DGtIrVWDl~t 93 (1630)
.++.++.|+.+..++++..+|.++++|+. |+....+. ....| ....+..+ |-.+++ .++.+.+.+-..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~-GivvLt--~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN-GIVVLT--GNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC-CEEEEC--CCCeEEEEeCcc
Confidence 37899999998888888888999999987 44411111 01222 22233333 433333 344444433222
Q ss_pred CcEEEEEcCCCCe-EE---eecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCC
Q 000346 94 EQSFVLHSPEKKM-ES---ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP 169 (1630)
Q Consensus 94 ge~~v~fspdg~~-as---gs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~ 169 (1630)
........++-.. .+ ...........+.+....+....+. .+.+.+..... . +. ..+++..+++||+++
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~-~i~~i~~~~~~-~----i~-~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE-TIYIIDENSFK-Q----ID-SDGPIIKIAVSPNGK 229 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC-EEEEEEccccc-c----cc-CCCCeEEEEECCCCC
Confidence 1110000000000 00 0000000012223333333333444 44544422210 1 11 246899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecC--CceeecCcccEEEcCC
Q 000346 170 VLYVAYADGLIRAYNIHTYAVHYTLQLD--NTIKLLGAGAFAFHPT 213 (1630)
Q Consensus 170 lLaSgS~DGtIrIWDl~t~~~i~tL~~~--~~V~IsGi~sVafSPD 213 (1630)
++|.-..+|.+.+.+.+-.+....+..+ .... .+.|.-+
T Consensus 230 ~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~-----~~~WCG~ 270 (410)
T PF04841_consen 230 FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPK-----QMAWCGN 270 (410)
T ss_pred EEEEEECCCCEEEEECcccceeEEeecCcCCCCc-----EEEEECC
Confidence 9999999999999987666666555542 3333 6666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.0079 Score=75.07 Aligned_cols=146 Identities=12% Similarity=0.250 Sum_probs=98.2
Q ss_pred CEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEEcCCC--cEEEEEec
Q 000346 124 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHP-RLPVLYVAY----ADGLIRAYNIHTY--AVHYTLQL 196 (1630)
Q Consensus 124 ~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSP-dg~lLaSgS----~DGtIrIWDl~t~--~~i~tL~~ 196 (1630)
.+++.|..+| .|.+-..+..|...-....+|..+.++++|++ |.++||.|- .|..+.|||+.++ .+..+..-
T Consensus 71 cIlavG~atG-~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 71 CILAVGSATG-NISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhccccC-ceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 4556666666 66666666554233445567788999999998 666777664 4567999999876 22222111
Q ss_pred CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeC-CCCEEEEEECCCceEEEEe
Q 000346 197 DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 197 ~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSP-dG~lLaSgS~DGtIrIWDl 275 (1630)
... .+.|..+++|..+.+.+.+|...+.+.++|++-.. ...-...+..+..+...| .+.++++.+ ||.|-+||.
T Consensus 150 s~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 150 SSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cccCccccccccCcchhhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 111 12333488999899999999999999999998321 111122345677788888 777887765 999999994
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.048 Score=65.99 Aligned_cols=147 Identities=10% Similarity=0.040 Sum_probs=110.9
Q ss_pred CCEEEEEecCCcEEEEEEccc-CCccceeeecCCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCcEEEEEec---C
Q 000346 123 QPVVFFGFHRRMSVTVVGTVE-GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA-DGLIRAYNIHTYAVHYTLQL---D 197 (1630)
Q Consensus 123 g~~LaSgs~Dg~tI~IwDl~s-g~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~-DGtIrIWDl~t~~~i~tL~~---~ 197 (1630)
-.++.+++.|+ .++.|.-.. .....++.+..|...|.+++.+-++.++.+.+. |..++++|+.+...+..+.. .
T Consensus 20 a~fiiqASlDG-h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 20 AKFIIQASLDG-HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hheEEeeecch-hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 35788999999 999998654 222445566778888999999999999999887 99999999987766655443 2
Q ss_pred CceeecCcccEEEcCCC-C-EEEEE-eCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 198 NTIKLLGAGAFAFHPTL-E-WLFVG-DRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 198 ~~V~IsGi~sVafSPDg-~-~LaSg-S~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
+.+ +...++.. . .|+++ -.++.+.|+|-...-|.....-.-|.++|..+.+.+-+..++|....|.|.-|.
T Consensus 99 g~a------~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs 172 (558)
T KOG0882|consen 99 GFA------EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWS 172 (558)
T ss_pred Cce------EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeec
Confidence 322 33334422 1 33333 358899999988766545666677999999999999999999999999999998
Q ss_pred ee
Q 000346 275 TR 276 (1630)
Q Consensus 275 l~ 276 (1630)
..
T Consensus 173 ~e 174 (558)
T KOG0882|consen 173 AE 174 (558)
T ss_pred CC
Confidence 75
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.1 Score=65.73 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=64.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEe-c-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC
Q 000346 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI 233 (1630)
Q Consensus 156 ~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~-~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t 233 (1630)
...|.-+.|+|.-.++|.+..+|.|.+..+. ++.+.++. . .+... +++|.|||+.|++|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~-----sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTA-----SLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccce-----eeeecCCCCEEEEEecCCeEEEEEccC
Confidence 4467789999999999999999999999887 78888888 3 33334 899999999999999999999999998
Q ss_pred CCc
Q 000346 234 ERP 236 (1630)
Q Consensus 234 gk~ 236 (1630)
+..
T Consensus 94 ~~~ 96 (665)
T KOG4640|consen 94 GGR 96 (665)
T ss_pred CCc
Confidence 763
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.74 E-value=3.1 Score=51.90 Aligned_cols=243 Identities=13% Similarity=0.116 Sum_probs=123.3
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCc-------------------------------------------EEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS-------------------------------------------RIAS 57 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~-------------------------------------------~i~t 57 (1630)
..|++++|.++..-|++|.. |.|.||.+...+ ....
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 37899999999888999988 888887543110 0111
Q ss_pred Ec-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEE-eecCCeEEEEE-----cCCC---CEEE
Q 000346 58 ID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES-ISVDTEVHLAL-----TPLQ---PVVF 127 (1630)
Q Consensus 58 l~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~as-gs~Dgtv~L~~-----spdg---~~La 127 (1630)
++ ..++|++++.|.- -+++.|..+|++.|.|++.......-+-...... ........+-| ..|+ ..++
T Consensus 82 ~~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 2378999999754 6999999999999999976654221111110000 00011111211 2232 4677
Q ss_pred EEecCCcEEEEEEccc--CCc---cceeeecCCCCCeEEEE-EcCC-----------------C---CEEEEEeCCCeEE
Q 000346 128 FGFHRRMSVTVVGTVE--GGR---APTKIKTDLKKPIVNLA-CHPR-----------------L---PVLYVAYADGLIR 181 (1630)
Q Consensus 128 Sgs~Dg~tI~IwDl~s--g~~---~~i~il~gH~~~ItsLa-fSPd-----------------g---~lLaSgS~DGtIr 181 (1630)
+|.+.| .+.+|.+.- +.. ........+...|..+. ++.+ + +-+++.+.+..+|
T Consensus 160 vGTn~G-~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 160 VGTNSG-NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEETTS-EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEeCCC-CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 788888 888887752 110 01111124556666555 3221 1 1244455578899
Q ss_pred EEEcCCCcEEEEEecCCceeecCcccEEE-----cCCCCEEEEEeCCCeEEEEECCCCCceeEEEeecc----CCCeEEE
Q 000346 182 AYNIHTYAVHYTLQLDNTIKLLGAGAFAF-----HPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG----SQPITSV 252 (1630)
Q Consensus 182 IWDl~t~~~i~tL~~~~~V~IsGi~sVaf-----SPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH----~~~VssV 252 (1630)
++...+.+..+... +..+. . ..+.+ ...+..|++-..+|.+++|.+..-+. +..+.-+ ...+...
T Consensus 239 v~~~~~~k~~~K~~-~~~~~-~--~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke--i~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF-DDPFL-C--SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE--IKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp EE-TT---EEEEE--SS-EE-E--EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E--EEEEE-SS---HHHHTT-
T ss_pred EEeCCCCcccceee-ccccc-c--ceEEEEeecccCCceEEEEEECCCcEEEEECCCchH--hhcccCCCcccccccccc
Confidence 99988776655444 22221 0 02333 23566788888999999999997664 4334332 2345567
Q ss_pred EEeCCCCEEEEEECCCceEEEE
Q 000346 253 AWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 253 sfSPdG~lLaSgS~DGtIrIWD 274 (1630)
+++++|..++-.+.. .+.+|.
T Consensus 313 sis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 313 SISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp EE-TTS-EEEE-SSS-EEEEEE
T ss_pred EECCCCCEEEEeCcc-cEEEEE
Confidence 778889877665533 444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.26 Score=62.99 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=99.8
Q ss_pred CCCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc--CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 20 KPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID--INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 20 kp~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~--~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
.+.+|+--+++..+.+++.|+. |.+.+|+-.+++....-. .++.+...+.|++ ..++|.|+..|.|.++-++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 4567887788888999999999 889999988777654444 3366677778888 88899999999999998866432
Q ss_pred --EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccC--CccceeeecCCCCCeEEEEEc
Q 000346 97 --FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG--GRAPTKIKTDLKKPIVNLACH 165 (1630)
Q Consensus 97 --~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg--~~~~i~il~gH~~~ItsLafS 165 (1630)
.+-+.|..+ .+.+...++.|++++..+++|+..| +|.+..+.+. .....+.+....+.|..+...
T Consensus 111 ~~~~~~t~~d~---~~~~rVTal~Ws~~~~k~ysGD~~G-kv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDK---SHKCRVTALEWSKNGMKLYSGDSQG-KVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred Ccceeeccccc---cCCceEEEEEecccccEEeecCCCc-eEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 222222222 1334557889999999999999999 8887777651 112233334446677777665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.71 E-value=9.1 Score=44.67 Aligned_cols=234 Identities=14% Similarity=0.053 Sum_probs=123.8
Q ss_pred CCCCEEEEEECCeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE----EcCCCC-
Q 000346 31 PNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL----HSPEKK- 105 (1630)
Q Consensus 31 PdG~lLasgs~GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~----fspdg~- 105 (1630)
..++.|+.|.++.+.+++.........+....+|..+...++ -+.+++-+ |+.++++++..-..... ..+.+.
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 357899999886699999943333333333345999999998 66666664 59999999875543110 000000
Q ss_pred --eEEeecCCeEEEE--EcCCCCEEEEEecCCcEEEEEEcccCC--c-cceeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 000346 106 --MESISVDTEVHLA--LTPLQPVVFFGFHRRMSVTVVGTVEGG--R-APTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 106 --~asgs~Dgtv~L~--~spdg~~LaSgs~Dg~tI~IwDl~sg~--~-~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG 178 (1630)
.......+...+. ....+...+...... .|.+|.+.... . ...+.+. ....+.+++|. ++.+++|..+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 0000111222222 223333444444455 67777776641 1 1223322 35788999998 5577777754
Q ss_pred eEEEEEcCCCcEEEEEec-CCceee----cC--cccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEE
Q 000346 179 LIRAYNIHTYAVHYTLQL-DNTIKL----LG--AGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITS 251 (1630)
Q Consensus 179 tIrIWDl~t~~~i~tL~~-~~~V~I----sG--i~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~Vss 251 (1630)
...+.|+.++.....+.. .....+ .+ ...+.--+++.+|++- |..-.+.|.. |+..-...+.= .....+
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSAPQS 233 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCchhE
Confidence 578899997766555432 111000 00 0022223345666653 2333333443 33211112221 234556
Q ss_pred EEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 252 VAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 252 VsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
+.++ ..+|+..+. +.|.||++...
T Consensus 234 ~~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 234 VAYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred EEEE--CCEEEEECC-CEEEEEECcCC
Confidence 6664 357777665 45999998743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.67 E-value=4.8 Score=51.60 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=103.0
Q ss_pred CeEEEEECCCCcEEEEEcCC-CC--------------------E-EEEEEeCCCCCEEEEEECCC---------------
Q 000346 42 TYIIEFDTLTGSRIASIDIN-SP--------------------V-VRMAYSPTSGHAVVAILEDC--------------- 84 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~~~-~~--------------------V-tsVafSpd~g~lLaSgS~DG--------------- 84 (1630)
+.|..+|..+|+.+..++.. .. | ...++.+. +..++.++.|+
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCC
Confidence 56888999999988777631 10 1 12344444 56677776554
Q ss_pred ---eEEEEECCCCcEEEEEcCCCC--e-EEeecCCeEEEEE--cCCC---CEEEEEecCCcEEEEEEcccCCccceeeec
Q 000346 85 ---TIRSCDFDTEQSFVLHSPEKK--M-ESISVDTEVHLAL--TPLQ---PVVFFGFHRRMSVTVVGTVEGGRAPTKIKT 153 (1630)
Q Consensus 85 ---tIrVWDl~tge~~v~fspdg~--~-asgs~Dgtv~L~~--spdg---~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~ 153 (1630)
.|.-+|.++|+..-.+..... . ..+.. ...+.. .-++ ..++.++.++ .+..+|..++. .+-...
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s--~p~~~~~~~~~g~~~~~V~~g~~~G-~l~ald~~tG~--~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN--QPSLADIKPKDGKPVPAIVHAPKNG-FFYVLDRTTGK--LISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC--CCeEEeccccCCCeeEEEEEECCCc-eEEEEECCCCc--EeeEeE
Confidence 788899999977333321110 0 00000 001111 0122 2577778888 89999998883 332221
Q ss_pred CCCCCeEEEEEcCCCCEEEEE------------------eCCCeEEEEEcCCCcEEEEEecCCcee--ecCc--ccEEEc
Q 000346 154 DLKKPIVNLACHPRLPVLYVA------------------YADGLIRAYNIHTYAVHYTLQLDNTIK--LLGA--GAFAFH 211 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~lLaSg------------------S~DGtIrIWDl~t~~~i~tL~~~~~V~--IsGi--~sVafS 211 (1630)
.. ...++.+| ..++++ ..+|.+...|..+++.+.......... ..|. ..-...
T Consensus 329 ~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~ 403 (488)
T cd00216 329 EV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA 403 (488)
T ss_pred ee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence 10 11233344 233332 236789999999999888776421000 0000 010111
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCc
Q 000346 212 PTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 212 PDg~~LaSgS~DGtVrVWDl~tgk~ 236 (1630)
-.+..|++++.||.|+.+|..+++.
T Consensus 404 ~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 404 TAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred ecCCeEEEECCCCeEEEEECCCCce
Confidence 2457888999999999999999985
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.13 Score=65.57 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEe-c-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 000346 158 PIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ-L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235 (1630)
Q Consensus 158 ~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~-~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk 235 (1630)
.|.--+++..+++++.|+.-|.+.+|+-..+.....-. + ...+. ....|++..+++.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-----~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-----VRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEE-----EEEecchhHhhhhhcCCceEEeehhhccC
Confidence 34444556678899999999999999866554332222 2 33333 67889998999999999999999877643
Q ss_pred ce---eEEEe-eccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 236 PS---MIGII-QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 236 ~~---lv~tL-~gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
+. .+... ..|...|++++|++++..+.+|...|+|..-.++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 11111 23678999999999999999999999998877765
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.87 Score=60.66 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=90.7
Q ss_pred CeEEEEECCCCcEEEEEcCC--CCEEEEEEeC----CCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeE
Q 000346 42 TYIIEFDTLTGSRIASIDIN--SPVVRMAYSP----TSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEV 115 (1630)
Q Consensus 42 GtI~VWDl~tg~~i~tl~~~--~~VtsVafSp----d~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv 115 (1630)
+.|+-.|+++|+.+..+..+ .+|..++-.. -+..-...|-.+..+..||.+-....+.++....+.+ ...-.
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~--~~~Fs 581 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS--KNNFS 581 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc--CCCce
Confidence 55999999999999999954 4455554321 0123455667789999999875432122221111111 11112
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 000346 116 HLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNI 185 (1630)
Q Consensus 116 ~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl 185 (1630)
+++.+ ...+|+.|+.+| .||+||-. +. .....+.+...+|.+|..+.||++++..| +..+.+++.
T Consensus 582 ~~aTt-~~G~iavgs~~G-~IRLyd~~-g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATT-EDGYIAVGSNKG-DIRLYDRL-GK-RAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEec-CCceEEEEeCCC-cEEeeccc-ch-hhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 33334 445899999999 99999954 32 56667778889999999999999988665 567777774
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.7 Score=44.56 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=67.6
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 000346 159 IVNLACHP---RL-PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE 234 (1630)
Q Consensus 159 ItsLafSP---dg-~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tg 234 (1630)
|+++++.. || +.|++||.|..||+|+- ...+..+.....|. +++-... ..++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~-----~L~~~~~-~~F~Y~l~NGTVGvY~~~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVT-----SLCSLGG-GRFAYALANGTVGVYDRSQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceE-----EEEEcCC-CEEEEEecCCEEEEEeCcce
Confidence 45565544 33 47999999999999964 46777777666776 7776666 56888889999999987543
Q ss_pred CceeEEEeeccCCCeEEEEEeC-CC---CEEEEEECCCceE
Q 000346 235 RPSMIGIIQVGSQPITSVAWLP-ML---RLLVTLCRDGSLQ 271 (1630)
Q Consensus 235 k~~lv~tL~gH~~~VssVsfSP-dG---~lLaSgS~DGtIr 271 (1630)
.. ..+. ...+.++.+.. ++ .-|++|-.+|.|-
T Consensus 74 lW----RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LW----RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee----eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 32 1222 23466666554 32 2688888888774
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.16 Score=64.09 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc-CCCCEE-EEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVV-RMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~-~~~~Vt-sVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
|..+.-+.|+|.-.++|.+.. |.|.+..++ .+.+.++. ++..++ +++|.|| |+.||.|-.||+|++.|++++...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccCCCce
Confidence 557899999999999999999 779888888 77788888 556666 9999999 999999999999999999887653
Q ss_pred E
Q 000346 98 V 98 (1630)
Q Consensus 98 v 98 (1630)
.
T Consensus 98 ~ 98 (665)
T KOG4640|consen 98 V 98 (665)
T ss_pred e
Confidence 3
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.7 Score=54.45 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=95.0
Q ss_pred CCCEEE-EEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCC--E-----EEEEeCCCeEEEEEcCCCcE--E
Q 000346 122 LQPVVF-FGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP--V-----LYVAYADGLIRAYNIHTYAV--H 191 (1630)
Q Consensus 122 dg~~La-Sgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~--l-----LaSgS~DGtIrIWDl~t~~~--i 191 (1630)
+.++++ ++.... .++-.|+..| +.+..+.-|.. |.-+.+.|+.+ . -++|-.|..|.-||.+-... +
T Consensus 344 dsnlil~~~~~~~-~l~klDIE~G--KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQD-KLYKLDIERG--KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcC-cceeeecccc--eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 334444 344444 7888999988 77777776655 77778888654 1 23466788999999873221 1
Q ss_pred EEEec-----CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEEC
Q 000346 192 YTLQL-----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 192 ~tL~~-----~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~ 266 (1630)
...+. ..... |.+-..+| +|++|+.+|.|++||--..+. ...+.+-..+|..|..+.+|++|+..+
T Consensus 420 ~~~q~kqy~~k~nFs-----c~aTT~sG-~IvvgS~~GdIRLYdri~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc- 490 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFS-----CFATTESG-YIVVGSLKGDIRLYDRIGRRA--KTALPGLGDAIKHVDVTADGKWILATC- 490 (644)
T ss_pred eeeeccccccccccc-----eeeecCCc-eEEEeecCCcEEeehhhhhhh--hhcccccCCceeeEEeeccCcEEEEec-
Confidence 11111 22232 55555454 799999999999999732221 345677789999999999999987655
Q ss_pred CCceEEEEeee
Q 000346 267 DGSLQVWKTRV 277 (1630)
Q Consensus 267 DGtIrIWDl~~ 277 (1630)
+..+.+-++..
T Consensus 491 ~tyLlLi~t~~ 501 (644)
T KOG2395|consen 491 KTYLLLIDTLI 501 (644)
T ss_pred ccEEEEEEEec
Confidence 56777777654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.23 E-value=23 Score=44.03 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=102.7
Q ss_pred EEEEEeCCCCCEEEEE-ECC----CeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecC-------
Q 000346 65 VRMAYSPTSGHAVVAI-LED----CTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHR------- 132 (1630)
Q Consensus 65 tsVafSpd~g~lLaSg-S~D----GtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~D------- 132 (1630)
...+++|+ +++++.+ +.. ..|+++|+++++....-- .. ... ..+.|.+++..++....+
T Consensus 127 ~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i------~~-~~~-~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 127 GGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI------EN-PKF-SSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE------EE-EES-EEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCcc------cc-ccc-ceEEEeCCCCEEEEEEeCccccccc
Confidence 35788999 8877754 333 459999999986511000 00 001 115566666555443321
Q ss_pred ---CcEEEEEEcccCCccceeeecCCCCC--eEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCC-----cEEEEEecCC
Q 000346 133 ---RMSVTVVGTVEGGRAPTKIKTDLKKP--IVNLACHPRLPVLYVAYA---D-GLIRAYNIHTY-----AVHYTLQLDN 198 (1630)
Q Consensus 133 ---g~tI~IwDl~sg~~~~i~il~gH~~~--ItsLafSPdg~lLaSgS~---D-GtIrIWDl~t~-----~~i~tL~~~~ 198 (1630)
...|+.|.+.+.......++...... ...+..++|+++++..+. + ..+.+.|+..+ ..........
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 22578888776642334555444333 678899999998775442 2 45788888764 3333333333
Q ss_pred ceeecCcccEEEcCCCCEEEEEeC---CCeEEEEECCCCCc-eeEEEeeccCCCeEEEEEeCCC-CEEEEEECCC--ceE
Q 000346 199 TIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERP-SMIGIIQVGSQPITSVAWLPML-RLLVTLCRDG--SLQ 271 (1630)
Q Consensus 199 ~V~IsGi~sVafSPDg~~LaSgS~---DGtVrVWDl~tgk~-~lv~tL~gH~~~VssVsfSPdG-~lLaSgS~DG--tIr 271 (1630)
.+. +.+... .+.+++.... .+.|...++.+... .-...+..|...+.-..+...+ .++++...++ .|+
T Consensus 278 ~~~----~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 GVE----YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp S-E----EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ceE----EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 333 133333 4444444432 45677778776542 1122455566543333333333 4555555666 567
Q ss_pred EEEee
Q 000346 272 VWKTR 276 (1630)
Q Consensus 272 IWDl~ 276 (1630)
+|++.
T Consensus 353 v~~~~ 357 (414)
T PF02897_consen 353 VYDLD 357 (414)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 77765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=7.5 Score=46.13 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=104.2
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC--CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN--SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~--~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~ 99 (1630)
.+.++.|+|+.+.|++..+ ..-.||=..+|..+.++... ...-++.|..+ +++.++--.++.+.++.++.....+.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcCCccEEe
Confidence 4899999999998888877 66667767779999998832 66777888887 88888777889998888765533111
Q ss_pred EcCCCCe---EEee-cCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCc-cceeeecCC-------CCCeEEEEEcC-
Q 000346 100 HSPEKKM---ESIS-VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR-APTKIKTDL-------KKPIVNLACHP- 166 (1630)
Q Consensus 100 fspdg~~---asgs-~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~-~~i~il~gH-------~~~ItsLafSP- 166 (1630)
.... +. .+.. ..|--.+++.+....++..-... -+.++.+..... -.......+ -..|.++.|++
T Consensus 166 ~~~~-~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 166 AKVQ-KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred ccce-EEeccccCCCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 1100 11 0001 22334567788887777777766 666666653310 111111122 12456778887
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcEEEEE
Q 000346 167 RLPVLYVAYADGLIRAYNIHTYAVHYTL 194 (1630)
Q Consensus 167 dg~lLaSgS~DGtIrIWDl~t~~~i~tL 194 (1630)
.+.+++.+..++.+.-.|.. |.++..+
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred CCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 44556666677777777654 4434333
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=4.3 Score=53.07 Aligned_cols=222 Identities=16% Similarity=0.069 Sum_probs=116.6
Q ss_pred cCCCCEEEEEEC-C------eEEEEECCCCcEEEEEc-CC-CCEEEEEEeCCCCCEEEEEECC------CeEEEEECCCC
Q 000346 30 HPNQALIAVAIG-T------YIIEFDTLTGSRIASID-IN-SPVVRMAYSPTSGHAVVAILED------CTIRSCDFDTE 94 (1630)
Q Consensus 30 SPdG~lLasgs~-G------tI~VWDl~tg~~i~tl~-~~-~~VtsVafSpd~g~lLaSgS~D------GtIrVWDl~tg 94 (1630)
+..+.++++|+. + .+..+|..+++...... .. ..-.+++... +...++||.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCC
Confidence 334566777766 3 28899999887765555 22 4455566654 5888999988 35667777766
Q ss_pred cEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCC----cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCE
Q 000346 95 QSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR----MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 95 e~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg----~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~l 170 (1630)
+. .+--.+..... ...+. .-+|.+.+.|+.|+ .+|..||..+.....+............+.+ +|.+
T Consensus 360 ~W----~~~a~M~~~R~--~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~i 430 (571)
T KOG4441|consen 360 QW----TPVAPMNTKRS--DFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKL 430 (571)
T ss_pred ce----eccCCccCccc--cceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEE
Confidence 53 22111100000 00111 11334445555443 2578888876632222222211111222222 6777
Q ss_pred EEEEeCCC------eEEEEEcCCCcEEEEEec-CCceeecCcccEEEcCCCCEEEEEeCCC-----eEEEEECCCCCcee
Q 000346 171 LYVAYADG------LIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRG-----TLLAWDVSIERPSM 238 (1630)
Q Consensus 171 LaSgS~DG------tIrIWDl~t~~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DG-----tVrVWDl~tgk~~l 238 (1630)
.++|+.|+ ++..||..+.+-...-.. ..... . .++. -++.+.+.|+.|+ +|..||..+.+...
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~---~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG---F-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCccccccc---c-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 78887554 467777765543222211 11110 0 2222 2566777777665 37789999887644
Q ss_pred EEEeeccCCCeEEEEEeCCCCEEEEEECCCc
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 269 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~lLaSgS~DGt 269 (1630)
+..+......+..+.+ ++.+.++|+.||.
T Consensus 506 v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 506 VAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred cccCccccccccEEEE--CCEEEEEecccCc
Confidence 4334433333333333 5678888888874
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.7 Score=56.40 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=69.9
Q ss_pred CCCEEEEEEC-CeEEEEECCCCcE--EEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEE
Q 000346 32 NQALIAVAIG-TYIIEFDTLTGSR--IASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES 108 (1630)
Q Consensus 32 dG~lLasgs~-GtI~VWDl~tg~~--i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~as 108 (1630)
.+.+++.|++ |+|-..|..+.-. .+.....++|++++|+.+ |..++.|-.+|.|.+||...++..-.+.-.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~---- 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITEHG---- 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeeecC----
Confidence 3556778877 7788888775422 111123489999999999 9999999999999999998876622222111
Q ss_pred eecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcc
Q 000346 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1630)
Q Consensus 109 gs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~ 142 (1630)
...++.+.+-+..++..++++...| .+|...
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~G---sf~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGG---SFWKLV 203 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCC---ceEEEE
Confidence 1233445555566666778887777 466654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=4.3 Score=52.99 Aligned_cols=215 Identities=8% Similarity=0.002 Sum_probs=102.4
Q ss_pred eEEEEECCCCcEEEEEcC-CCCE-EEEEEeCCCCCEEEEEECC------CeEEEEECCCCcEEEEEcCCCCeEEeecCCe
Q 000346 43 YIIEFDTLTGSRIASIDI-NSPV-VRMAYSPTSGHAVVAILED------CTIRSCDFDTEQSFVLHSPEKKMESISVDTE 114 (1630)
Q Consensus 43 tI~VWDl~tg~~i~tl~~-~~~V-tsVafSpd~g~lLaSgS~D------GtIrVWDl~tge~~v~fspdg~~asgs~Dgt 114 (1630)
.+..||..+++....-.. .... .+++.. + +..++.||.+ ..+..||..++.. ..-...... ..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l-~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~-R~~- 344 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV-D-NEIIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKN-RCR- 344 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE-C-CEEEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcch-hhc-
Confidence 367888888765443221 1111 223332 4 6778888753 3467788776643 111111000 000
Q ss_pred EEEEEcCCCCEEEEEecCC----cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC------------
Q 000346 115 VHLALTPLQPVVFFGFHRR----MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG------------ 178 (1630)
Q Consensus 115 v~L~~spdg~~LaSgs~Dg----~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG------------ 178 (1630)
..+. .-++.+.+.|+.++ .++.+||..+.....+..+.........+.+ ++.+.+.|+.++
T Consensus 345 ~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 345 FSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred eeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccc
Confidence 0111 11233444444332 2578899876521222222111111122222 577777776542
Q ss_pred -----------eEEEEEcCCCcEE--EEEecCCceeecCcccEEEcCCCCEEEEEeCC------CeEEEEECCC-CCcee
Q 000346 179 -----------LIRAYNIHTYAVH--YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR------GTLLAWDVSI-ERPSM 238 (1630)
Q Consensus 179 -----------tIrIWDl~t~~~i--~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~D------GtVrVWDl~t-gk~~l 238 (1630)
++..||..+.+-. ..+.. .... . +++ .-+++..+.|+.+ ..+..||..+ .+...
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~---~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTIR---P-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCc-cccc---C-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 3666776554321 11111 1111 0 222 2245666666643 2467899997 56544
Q ss_pred EEEeeccCCCeEEEEEeCCCCEEEEEECCC--ceEEEEee
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDG--SLQVWKTR 276 (1630)
Q Consensus 239 v~tL~gH~~~VssVsfSPdG~lLaSgS~DG--tIrIWDl~ 276 (1630)
+..+.........+.+ +|++.++|+.|| ++..||..
T Consensus 496 ~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 496 ITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 5445443333333333 678899999888 55555554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.65 E-value=25 Score=45.78 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=80.9
Q ss_pred CEEEEEEC-CeEEEEECCCCcEEEEEcCC--C---CEEEEEEeCCCCCEEEEEE------CCCeEEEEECCCCcEEEEEc
Q 000346 34 ALIAVAIG-TYIIEFDTLTGSRIASIDIN--S---PVVRMAYSPTSGHAVVAIL------EDCTIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 34 ~lLasgs~-GtI~VWDl~tg~~i~tl~~~--~---~VtsVafSpd~g~lLaSgS------~DGtIrVWDl~tge~~v~fs 101 (1630)
..+++++. +.|.-.|..+|+.+...... . .+++--..-+ + .++.+. .+|.|..+|.++|+..-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~-g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK-G-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC-C-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 34555554 78999999999998776521 1 1221111113 3 444443 26899999999998732222
Q ss_pred CCCC------------------------e-EEeecCCe-EEEEEcCCCCEEEEEecC---------------CcEEEEEE
Q 000346 102 PEKK------------------------M-ESISVDTE-VHLALTPLQPVVFFGFHR---------------RMSVTVVG 140 (1630)
Q Consensus 102 pdg~------------------------~-asgs~Dgt-v~L~~spdg~~LaSgs~D---------------g~tI~IwD 140 (1630)
.... . ..++. .. ......+...+++.+..+ ..+|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~-~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGG-ATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCC-CccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 1100 0 00000 00 111223333444443311 12567777
Q ss_pred cccCCccceeeecCCCCCe---------EEEEEcCCCC---EEEEEeCCCeEEEEEcCCCcEE
Q 000346 141 TVEGGRAPTKIKTDLKKPI---------VNLACHPRLP---VLYVAYADGLIRAYNIHTYAVH 191 (1630)
Q Consensus 141 l~sg~~~~i~il~gH~~~I---------tsLafSPdg~---lLaSgS~DGtIrIWDl~t~~~i 191 (1630)
..++ +..-.++...+.+ .-+....+|+ .++.+..+|.+.+.|-++++.+
T Consensus 278 ~~TG--~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTG--KIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccC--CEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 7777 3333332221111 1122324665 7788999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=2.7 Score=55.01 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=85.4
Q ss_pred EEEEEcCCCCEEEEEe------cCC-cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC-CeEEEE---
Q 000346 115 VHLALTPLQPVVFFGF------HRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-GLIRAY--- 183 (1630)
Q Consensus 115 v~L~~spdg~~LaSgs------~Dg-~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D-GtIrIW--- 183 (1630)
.....++++..++... .+. ..|.+++. +. .......+. ..+.-.|+|+|..+++.+.. ..+++.
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3455677777666554 232 14555554 22 223333332 37889999998887777533 222333
Q ss_pred --------EcCCCcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEE---EECCCCCceeE--EEeec-cCCCe
Q 000346 184 --------NIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA---WDVSIERPSMI--GIIQV-GSQPI 249 (1630)
Q Consensus 184 --------Dl~t~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrV---WDl~tgk~~lv--~tL~g-H~~~V 249 (1630)
+++.+.... .....|. .+.|||||..++... ++.|.+ -....+...+. ..+.. -...+
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Is-----sl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPIS-----ELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcC-----eEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 333222211 1134566 999999999988776 577776 44344432121 11222 22346
Q ss_pred EEEEEeCCCCEEEEEECCCceEEEEeeee
Q 000346 250 TSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 250 ssVsfSPdG~lLaSgS~DGtIrIWDl~~~ 278 (1630)
.++.|..++.++ .+..++...+|.+...
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVNLD 527 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEecC
Confidence 889999999865 5566676778877643
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.6 Score=54.67 Aligned_cols=147 Identities=10% Similarity=0.091 Sum_probs=99.0
Q ss_pred CCCEEEEEEC--CeEEEEECCCCcEEEEEcCCCCEEEEEEeCCCCC-------EEEEEECCCeEEEEECCCCcE-EEEEc
Q 000346 32 NQALIAVAIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGH-------AVVAILEDCTIRSCDFDTEQS-FVLHS 101 (1630)
Q Consensus 32 dG~lLasgs~--GtI~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~-------lLaSgS~DGtIrVWDl~tge~-~v~fs 101 (1630)
+.++|+.... +.++-.|++.|+.+..+..+..|+-+.+.|+ .. --+.|-.|..|.-||.+-... .+.+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d-~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPD-FKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCC-cchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4455555444 5599999999999999997766888888886 32 223455788999999864322 23332
Q ss_pred CCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 000346 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181 (1630)
Q Consensus 102 pdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIr 181 (1630)
....+.++ ....+.......+|+.|+.+| .|++||- .+. .....+.+...+|..+..+.+|++|+..+ +..+.
T Consensus 423 q~kqy~~k---~nFsc~aTT~sG~IvvgS~~G-dIRLYdr-i~~-~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 423 QSKQYSTK---NNFSCFATTESGYIVVGSLKG-DIRLYDR-IGR-RAKTALPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred eccccccc---cccceeeecCCceEEEeecCC-cEEeehh-hhh-hhhhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 21111111 112223333445899999999 9999997 342 66677788899999999999999987555 56777
Q ss_pred EEEcC
Q 000346 182 AYNIH 186 (1630)
Q Consensus 182 IWDl~ 186 (1630)
+.|+.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 76643
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.38 Score=61.68 Aligned_cols=44 Identities=7% Similarity=0.135 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCCccccchHHHHHHHHhh
Q 000346 1452 GADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHL 1501 (1630)
Q Consensus 1452 ~~e~~~~i~icreY~~a~~ll~El~R~~~~~~~~~~~~~~~R~~ELaayf 1501 (1630)
-+|+|-.|=-|-|=+++.+|||-| ++. ++.+ +-.++..|+-+-|
T Consensus 715 yeeik~~ILevne~vLse~~iqnL-ik~-lPe~----E~l~~L~e~Kaey 758 (1102)
T KOG1924|consen 715 YEEIKNVILEVNEDVLSESMIQNL-IKH-LPEQ----EQLNKLSELKAEY 758 (1102)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH-HHh-CCCH----HHHHHHHHHHHhc
Confidence 457888888899999999998877 333 5322 3334666665444
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.26 E-value=13 Score=46.17 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=82.7
Q ss_pred EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEE---CCCe-EEEEECCCCcE-EEEEcCCCCe-EEeecCCeEEE
Q 000346 44 IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL---EDCT-IRSCDFDTEQS-FVLHSPEKKM-ESISVDTEVHL 117 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS---~DGt-IrVWDl~tge~-~v~fspdg~~-asgs~Dgtv~L 117 (1630)
|.--|+.+|+....++-+..+..+.|+|.+..+|+-|- .|.. -|+|-+++... .....+.... ..++ =
T Consensus 170 i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH------E 243 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH------E 243 (386)
T ss_dssp EEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE------E
T ss_pred EEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc------c
Confidence 44557788887777776788999999998566666654 2221 35665543322 1111111112 2232 3
Q ss_pred EEcCCCCEEEEEec-----CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCC--------------
Q 000346 118 ALTPLQPVVFFGFH-----RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG-------------- 178 (1630)
Q Consensus 118 ~~spdg~~LaSgs~-----Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DG-------------- 178 (1630)
+|.++|..+..-+. +. .|.-+|..++. ...... ..+...+..++||++++-=+.|.
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~-~i~~~d~~t~~--~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDF-WIAGYDPDTGE--RRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--E-EEEEE-TTT----EEEEEE--E-SEEEEEE-TTSSEEEEEE-----------------
T ss_pred cccCCCCEEEEEeecCCCCce-EEEeeCCCCCC--ceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 67777765554222 33 55666666663 121111 12344566678988876533332
Q ss_pred --eEEEEEcCCCcEEEEEec-CCceeecC-----cccEEEcCCCCEEEEEe-CCCeEEEE
Q 000346 179 --LIRAYNIHTYAVHYTLQL-DNTIKLLG-----AGAFAFHPTLEWLFVGD-RRGTLLAW 229 (1630)
Q Consensus 179 --tIrIWDl~t~~~i~tL~~-~~~V~IsG-----i~sVafSPDg~~LaSgS-~DGtVrVW 229 (1630)
.|+++++..+.......+ .....+.| -..+.|+|||++++-.| ..|...||
T Consensus 319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 566778776655433333 11111111 23679999999877665 46666665
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.22 E-value=30 Score=40.96 Aligned_cols=187 Identities=10% Similarity=0.037 Sum_probs=107.1
Q ss_pred cEEEEEcCC--CCEEEEEEeCCCCCEEEEEECCC--eEEEEECCCCcEEEEEcCCCCe----EEeecCCeEEEEEcCCCC
Q 000346 53 SRIASIDIN--SPVVRMAYSPTSGHAVVAILEDC--TIRSCDFDTEQSFVLHSPEKKM----ESISVDTEVHLALTPLQP 124 (1630)
Q Consensus 53 ~~i~tl~~~--~~VtsVafSpd~g~lLaSgS~DG--tIrVWDl~tge~~v~fspdg~~----asgs~Dgtv~L~~spdg~ 124 (1630)
+.+.++.|+ .-...+.|..+ +.++-+.+.-| .|+.+|+.+++......-+.+. ++...|..+.+.|
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW----- 107 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW----- 107 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----
T ss_pred EEEEECCCCCcccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----
Confidence 456667766 34577888777 78888888665 7999999999873333222232 2222332222222
Q ss_pred EEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec---C---C
Q 000346 125 VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---D---N 198 (1630)
Q Consensus 125 ~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~---~---~ 198 (1630)
.++ ...+||..+- +.+..+.- .+.=..++ .|+..|+.+.....++++|..+.+...++.- . .
T Consensus 108 ------k~~-~~f~yd~~tl--~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 108 ------KEG-TGFVYDPNTL--KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp ------SSS-EEEEEETTTT--EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred ------cCC-eEEEEccccc--eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 233 7788888765 44544432 23334555 3677777777778999999988888777763 1 2
Q ss_pred ceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec------------c---CCCeEEEEEeCCCCEEEE
Q 000346 199 TIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV------------G---SQPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 199 ~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g------------H---~~~VssVsfSPdG~lLaS 263 (1630)
.++ -+.|. +|...+=.-....|...|..+|+. +..+.- + ..-.+.|+|+|..+.|..
T Consensus 176 ~LN-----ELE~i-~G~IyANVW~td~I~~Idp~tG~V--~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 176 NLN-----ELEYI-NGKIYANVWQTDRIVRIDPETGKV--VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp -EE-----EEEEE-TTEEEEEETTSSEEEEEETTT-BE--EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred CcE-----eEEEE-cCEEEEEeCCCCeEEEEeCCCCeE--EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 333 56665 565555555566777788888873 433310 1 245789999987665444
Q ss_pred EE
Q 000346 264 LC 265 (1630)
Q Consensus 264 gS 265 (1630)
.+
T Consensus 248 TG 249 (264)
T PF05096_consen 248 TG 249 (264)
T ss_dssp EE
T ss_pred Ee
Confidence 33
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.19 E-value=40 Score=42.41 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=97.2
Q ss_pred CCCEEEEEEC--CeEEEEECCC----CcEEEEEcC-------C-CCEEEEEEeCCCCCEEEEEEC------CCeEEEEEC
Q 000346 32 NQALIAVAIG--TYIIEFDTLT----GSRIASIDI-------N-SPVVRMAYSPTSGHAVVAILE------DCTIRSCDF 91 (1630)
Q Consensus 32 dG~lLasgs~--GtI~VWDl~t----g~~i~tl~~-------~-~~VtsVafSpd~g~lLaSgS~------DGtIrVWDl 91 (1630)
+.++|++.+- ++|.|.|+.+ .+..++++. . ..-..+..-|+ |+.++|+-. -|-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~-G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD-GRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC-ccEEEEeccCCCCCCCCcEEEEcC
Confidence 4667777775 6699999973 355666652 1 23344444577 888887542 245778887
Q ss_pred CCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEec-------------------CCcEEEEEEcccCCccceeee
Q 000346 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH-------------------RRMSVTVVGTVEGGRAPTKIK 152 (1630)
Q Consensus 92 ~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~-------------------Dg~tI~IwDl~sg~~~~i~il 152 (1630)
++.+..-.|..+... ...-.-+|+.|..+.+++..- -+.++.+||+.+. +.++++
T Consensus 165 ~tf~v~g~We~~~~~----~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r--~~~Q~i 238 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGP----QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR--KLLQTI 238 (461)
T ss_dssp TT--EEEE--SB-TT----------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT--EEEEEE
T ss_pred ccccccceeccCCCC----CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC--cEeeEE
Confidence 776665556543321 111245788888888877641 2238999999988 666666
Q ss_pred cCCC-C-CeEEEEEcC--CCCE-EEEEeCCCeEEEEEc-CCC--cEEEEEec-----CCceee---------cC-cccEE
Q 000346 153 TDLK-K-PIVNLACHP--RLPV-LYVAYADGLIRAYNI-HTY--AVHYTLQL-----DNTIKL---------LG-AGAFA 209 (1630)
Q Consensus 153 ~gH~-~-~ItsLafSP--dg~l-LaSgS~DGtIrIWDl-~t~--~~i~tL~~-----~~~V~I---------sG-i~sVa 209 (1630)
.--. + ....+.|.. +..+ ++.+....+|..|-- ..+ .....+.- +.++.- .+ ++.+.
T Consensus 239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 4222 2 344566654 4444 444445566665543 332 22222221 111100 01 34889
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCC-CceeEEE
Q 000346 210 FHPTLEWLFVGD-RRGTLLAWDVSIE-RPSMIGI 241 (1630)
Q Consensus 210 fSPDg~~LaSgS-~DGtVrVWDl~tg-k~~lv~t 241 (1630)
.|.|.++|..++ .+|.|+.||+..- .+.++..
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gq 352 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQ 352 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEE
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeE
Confidence 999999998777 5999999999974 4444443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=56 Score=43.97 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCCCEEEEEEC--Ce----EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEEC-C-----CeEEEE
Q 000346 22 LQPHEAAFHPNQALIAVAIG--TY----IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-D-----CTIRSC 89 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~--Gt----I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~-D-----GtIrVW 89 (1630)
..+..+.|||||++|+.+.+ |. |++-|+.+|..+...-.... ..++|++| ++.|+.+.. + ..|+.|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D-~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWAND-SWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeC-CCEEEEEEecCCCCCCCEEEEE
Confidence 46778899999999998877 33 88899988864322111122 56999998 665544432 2 367888
Q ss_pred ECCCCc--EEEEEc-CCCCeEEeecCCeEEEEEcCCCCEEEEEecCC--cEEEEEEc
Q 000346 90 DFDTEQ--SFVLHS-PEKKMESISVDTEVHLALTPLQPVVFFGFHRR--MSVTVVGT 141 (1630)
Q Consensus 90 Dl~tge--~~v~fs-pdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg--~tI~IwDl 141 (1630)
++.++. ..+.|. +++.. .+..+.+.++.+++..+... ..+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~-------~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTF-------YVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCE-------EEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888773 233343 22221 12334454665544433222 25777774
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.14 E-value=22 Score=48.13 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=52.7
Q ss_pred CCEEEEEEC-CeEEEEECCCCcEEEEEcCCCC---------EEEEEEeCC---------------CCCEEEEEECCCeEE
Q 000346 33 QALIAVAIG-TYIIEFDTLTGSRIASIDINSP---------VVRMAYSPT---------------SGHAVVAILEDCTIR 87 (1630)
Q Consensus 33 G~lLasgs~-GtI~VWDl~tg~~i~tl~~~~~---------VtsVafSpd---------------~g~lLaSgS~DGtIr 87 (1630)
+..|++++. +.|.-.|..||+.+-.++.+.. .+.+.+... ++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 445666665 7799999999999888874321 344555321 134788888999999
Q ss_pred EEECCCCcEEEEEcCCCCe
Q 000346 88 SCDFDTEQSFVLHSPEKKM 106 (1630)
Q Consensus 88 VWDl~tge~~v~fspdg~~ 106 (1630)
-.|.++|+.+-.|..++..
T Consensus 274 ALDA~TGk~~W~fg~~G~v 292 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTV 292 (764)
T ss_pred EEECCCCCEEEEecCCCce
Confidence 9999999988777655543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=92.09 E-value=6.1 Score=40.63 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=23.5
Q ss_pred EEEEEECCe-EEEEECCCCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCeEEEEE
Q 000346 35 LIAVAIGTY-IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 35 lLasgs~Gt-I~VWDl~tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGtIrVWD 90 (1630)
.|++|+++. |++|+-. +.+..+.-++.|++++-... ..++.+..+|+|-+|+
T Consensus 17 eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYD 69 (111)
T ss_pred eEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEe
Confidence 444444422 5555422 33444444444555544433 3344455555555544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.05 E-value=14 Score=43.56 Aligned_cols=214 Identities=15% Similarity=0.062 Sum_probs=124.9
Q ss_pred CCcEEEEEcCCCCEEEEEEeCCCCCEEEEEECCCe-EEEEECCCCcE-EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEE
Q 000346 51 TGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCT-IRSCDFDTEQS-FVLHSPEKKMESISVDTEVHLALTPLQPVVFF 128 (1630)
Q Consensus 51 tg~~i~tl~~~~~VtsVafSpd~g~lLaSgS~DGt-IrVWDl~tge~-~v~fspdg~~asgs~Dgtv~L~~spdg~~LaS 128 (1630)
.|+++.......+-..|+|+|....-++.+-.-|+ ..++|.++.+. .+..+..++...++. .++++|.+|+.
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYA 130 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYA 130 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEe
Confidence 36666655545666778888875566666655554 46788877765 333444444443433 67888887776
Q ss_pred Eec-----CCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCC------------------CeEEEEEc
Q 000346 129 GFH-----RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD------------------GLIRAYNI 185 (1630)
Q Consensus 129 gs~-----Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~D------------------GtIrIWDl 185 (1630)
.-+ .+ .|-+||.+.+. +.+-.+..|.-.-..+.|.+||+.++++... -++.+.|.
T Consensus 131 TEndfd~~rG-ViGvYd~r~~f-qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~ 208 (366)
T COG3490 131 TENDFDPNRG-VIGVYDAREGF-QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA 208 (366)
T ss_pred ecCCCCCCCc-eEEEEeccccc-ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence 543 34 78999998765 6667778887777889999999999887520 12333343
Q ss_pred CCCcEEEEEec-----CCceeecCcccEEEcCCCCEEEEEeCCCe-----EEEEECCCCCceeEEEee-------ccCCC
Q 000346 186 HTYAVHYTLQL-----DNTIKLLGAGAFAFHPTLEWLFVGDRRGT-----LLAWDVSIERPSMIGIIQ-------VGSQP 248 (1630)
Q Consensus 186 ~t~~~i~tL~~-----~~~V~IsGi~sVafSPDg~~LaSgS~DGt-----VrVWDl~tgk~~lv~tL~-------gH~~~ 248 (1630)
.++..+..... ...+. .++..+||..++.+-..|. -.|=....+++ +..+. .-.+.
T Consensus 209 atG~liekh~Lp~~l~~lSiR-----Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~--l~~~~~pee~~~~~anY 281 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIR-----HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP--LEFLDLPEEQTAAFANY 281 (366)
T ss_pred cccchhhhccCchhhhhccee-----eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc--CcccCCCHHHHHHHHhh
Confidence 34443322221 23444 6677777765554432221 11111111221 11111 12256
Q ss_pred eEEEEEeCCCCEEEEEECCC-ceEEEEeeeec
Q 000346 249 ITSVAWLPMLRLLVTLCRDG-SLQVWKTRVII 279 (1630)
Q Consensus 249 VssVsfSPdG~lLaSgS~DG-tIrIWDl~~~~ 279 (1630)
|-+++.+.+..+++..|-.| ...+||..+..
T Consensus 282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred hhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 77888887666766666555 66789987543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.78 E-value=36 Score=40.95 Aligned_cols=224 Identities=10% Similarity=0.054 Sum_probs=120.3
Q ss_pred CCcEEEEEcCCCCEEEEEEC-CeEEEEECC------CC-cEEEEEcC------CCCEEEEEEeCCCCC------------
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTL------TG-SRIASIDI------NSPVVRMAYSPTSGH------------ 75 (1630)
Q Consensus 22 ~rV~~LaFSPdG~lLasgs~-GtI~VWDl~------tg-~~i~tl~~------~~~VtsVafSpd~g~------------ 75 (1630)
...+.|+|+|.+.+-++... +...+||.. .. ..+-++.. ....+.+.|+.. ..
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~-~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGS-DTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCC-CceEEcCCCcccce
Confidence 46789999999987776666 889999986 12 23334431 246888888854 22
Q ss_pred EEEEEECCCeEEEEECCCCcE-----EEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccce-
Q 000346 76 AVVAILEDCTIRSCDFDTEQS-----FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT- 149 (1630)
Q Consensus 76 lLaSgS~DGtIrVWDl~tge~-----~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i- 149 (1630)
.++.+++||+|.-|...-+.. .+.+. ++.. +..-.-..+.....+..|+.+.-...+|.++|-.-. ...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d-~s~~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~ 176 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVD-ASQQ--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPL 176 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEc-cCCC--cceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccC
Confidence 356778999999998532211 22221 1110 000000223333334555554433338888875432 110
Q ss_pred -eeecCC----------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEecCCceeecCcccEEEcC
Q 000346 150 -KIKTDL----------------KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP 212 (1630)
Q Consensus 150 -~il~gH----------------~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~~~~V~IsGi~sVafSP 212 (1630)
..+.+. .-.|+-..-.++...=+.+..-|.|-+||.. ++.++.+......+ -.+.++..|
T Consensus 177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LN--aPWG~a~AP 253 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLN--APWGLAIAP 253 (336)
T ss_pred CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCccc--CCceeeeCh
Confidence 001100 0011111111111111222334689999865 67777776432221 112666655
Q ss_pred ------CCCEEEEEeCCCeEEEEECCCCCceeEEEeeccC------CCeEEEEEeC
Q 000346 213 ------TLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS------QPITSVAWLP 256 (1630)
Q Consensus 213 ------Dg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~------~~VssVsfSP 256 (1630)
.+.+|+---.||+|.++|..+++. +..+.... ..++.+.|..
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~--~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQ--LGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCce--eeeecCCCCCeEEecCeEEeeeCC
Confidence 456666556799999999998874 55554433 3467777765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.60 E-value=40 Score=41.16 Aligned_cols=59 Identities=15% Similarity=0.023 Sum_probs=37.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCc-eeEEE-eeccCCCeEEEEEeCCCCEEEEEECCCceE
Q 000346 213 TLEWLFVGDRRGTLLAWDVSIERP-SMIGI-IQVGSQPITSVAWLPMLRLLVTLCRDGSLQ 271 (1630)
Q Consensus 213 Dg~~LaSgS~DGtVrVWDl~tgk~-~lv~t-L~gH~~~VssVsfSPdG~lLaSgS~DGtIr 271 (1630)
.|.++++.-..+.|...++.+... .-... +......+..+.+.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 445566555566777777764421 11122 233445899999999999999988888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.44 E-value=19 Score=45.18 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCEEEEEEC-------CeEEEEECCCCcEEEEEcCC----CCEEEEEEeCCCCCEEEEEEC----------
Q 000346 24 PHEAAFHPNQALIAVAIG-------TYIIEFDTLTGSRIASIDIN----SPVVRMAYSPTSGHAVVAILE---------- 82 (1630)
Q Consensus 24 V~~LaFSPdG~lLasgs~-------GtI~VWDl~tg~~i~tl~~~----~~VtsVafSpd~g~lLaSgS~---------- 82 (1630)
.+.+-.-|+|+.++++.. |.+.+.|-++.+.....+.. .--.+.-|.|. .+.++|...
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGF 210 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT--
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCC
Confidence 334444578888887643 33999999998888888732 33577888998 888888652
Q ss_pred ----------CCeEEEEECCCCcEE--EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEc-ccCCccce
Q 000346 83 ----------DCTIRSCDFDTEQSF--VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT-VEGGRAPT 149 (1630)
Q Consensus 83 ----------DGtIrVWDl~tge~~--v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl-~sg~~~~i 149 (1630)
-.++.+||+.+.+.. +.+-.++.. --.++....|+..+-++++.-..+|..|-- ..+.....
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~-----pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM-----PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE-----EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred ChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc-----eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence 357999999988762 222222111 012444445555555544433223333332 22211111
Q ss_pred eee--c-----------------CCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC---cEEEEEecCCce------
Q 000346 150 KIK--T-----------------DLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTY---AVHYTLQLDNTI------ 200 (1630)
Q Consensus 150 ~il--~-----------------gH~~~ItsLafSPdg~lLaSgS-~DGtIrIWDl~t~---~~i~tL~~~~~V------ 200 (1630)
++. . .-..-|+.|..|.|.++|.+++ .+|.||.||+... +.+..+...+.+
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~ 365 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHP 365 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--T
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCc
Confidence 111 0 0024578999999999988777 8999999999864 333332211111
Q ss_pred -----ee-cCcccEEEcCCCCEEEEEe
Q 000346 201 -----KL-LGAGAFAFHPTLEWLFVGD 221 (1630)
Q Consensus 201 -----~I-sGi~sVafSPDg~~LaSgS 221 (1630)
.+ -|...+..|-||+.|+..+
T Consensus 366 ~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 366 VVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TS------S----EEE-TTSSEEEEE-
T ss_pred cccccccCCCCCeEEEccCCeEEEEEe
Confidence 00 1123677888888877664
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.55 Score=62.51 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcE--EEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeec
Q 000346 167 RLPVLYVAYADGLIRAYNIHTYAV--HYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 244 (1630)
Q Consensus 167 dg~lLaSgS~DGtIrIWDl~t~~~--i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~g 244 (1630)
.+..++.|++.|.+-..|....-. .+......+|. +++|+.+|..++.|-.+|.|.+||+.+++. .+.+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vt-----svafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVT-----SVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcce-----eeEecCCCceeccccCCCcEEEEEccCCcc--eeeeee
Confidence 455788899999999988765311 11112267777 999999999999999999999999999875 667777
Q ss_pred cCCCeEEEEE---eCCCCEEEEEECCCceEEEEeee
Q 000346 245 GSQPITSVAW---LPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 245 H~~~VssVsf---SPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
|..+.+++-+ ..++..+.++..-|. +|.+..
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 7766655544 446666777776666 787753
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=18 Score=47.69 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEE---EEcCCCcEEEE-----Ee-c-CCceeecCcccEEEcCCCCEEEEEeCCC
Q 000346 155 LKKPIVNLACHPRLPVLYVAYADGLIRA---YNIHTYAVHYT-----LQ-L-DNTIKLLGAGAFAFHPTLEWLFVGDRRG 224 (1630)
Q Consensus 155 H~~~ItsLafSPdg~lLaSgS~DGtIrI---WDl~t~~~i~t-----L~-~-~~~V~IsGi~sVafSPDg~~LaSgS~DG 224 (1630)
....|..+.|||||..++... ++.|.+ -....+. ... +. . ...+. .+.|..++.++ ++..++
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~-----~l~W~~~~~L~-V~~~~~ 517 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV-----SLDWRTGDSLV-VGRSDP 517 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc-----cceEecCCEEE-EEecCC
Confidence 356799999999999888766 577776 4434443 111 11 1 22234 89999999854 556555
Q ss_pred eEEEEECCC-CCceeEEEeec--cCCCeEEEEEeCCCCEEEEEECCC
Q 000346 225 TLLAWDVSI-ERPSMIGIIQV--GSQPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 225 tVrVWDl~t-gk~~lv~tL~g--H~~~VssVsfSPdG~lLaSgS~DG 268 (1630)
...+|.+.- +.. ...+.. ....+.+++-+++ . |+....+|
T Consensus 518 ~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g 560 (591)
T PRK13616 518 EHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS-T-VYVTDARA 560 (591)
T ss_pred CCceEEEecCCcc--ccccCCCCccCceEEEecCCc-e-EEEEcCCc
Confidence 555665442 221 111122 2456667766653 3 33434455
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.74 E-value=35 Score=40.40 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=106.6
Q ss_pred CcEEEEEcCCCCEEEEEEC-Ce--EEEEECCCCcEEEEEcCCCC--EEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TY--IIEFDTLTGSRIASIDINSP--VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-Gt--I~VWDl~tg~~i~tl~~~~~--VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~ 97 (1630)
--.++.|..+|.++-+.+. |. |+.+|+.+|+.......... =-.++...+ .+....-.++...+||.++-+..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEE
Confidence 4557888777877777666 65 99999999998877763322 234555544 55555567899999999888774
Q ss_pred EEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeec--CC---CCCeEEEEEcCCCCEEE
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT--DL---KKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 98 v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~--gH---~~~ItsLafSPdg~lLa 172 (1630)
-.|+-.+.- +-+. .++..++.++... .++++|..+- .....+. .. -..++.+.|. +|...|
T Consensus 124 ~~~~y~~EG--------WGLt--~dg~~Li~SDGS~-~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i-~G~IyA 189 (264)
T PF05096_consen 124 GTFPYPGEG--------WGLT--SDGKRLIMSDGSS-RLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYI-NGKIYA 189 (264)
T ss_dssp EEEE-SSS----------EEE--ECSSCEEEE-SSS-EEEEE-TTT---SEEEEEE-EETTEE---EEEEEEE-TTEEEE
T ss_pred EEEecCCcc--------eEEE--cCCCEEEEECCcc-ceEEECCccc--ceEEEEEEEECCEECCCcEeEEEE-cCEEEE
Confidence 444433321 1222 2334444444445 6788886654 2222221 11 2245667776 566666
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec----------------CCceeecCcccEEEcCCCCEEEEEe
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL----------------DNTIKLLGAGAFAFHPTLEWLFVGD 221 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~----------------~~~V~IsGi~sVafSPDg~~LaSgS 221 (1630)
=.-....|...|..+|++...+.. .+-.+ .++|+|....|++.+
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN-----GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN-----GIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE-----EEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE-----eEeEeCCCCEEEEEe
Confidence 555777888899999999888751 11244 899999766555554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=90.60 E-value=8.7 Score=45.06 Aligned_cols=119 Identities=12% Similarity=0.178 Sum_probs=77.2
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEE
Q 000346 153 TDLKKPIVNLACHPRLP-VLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAW 229 (1630)
Q Consensus 153 ~gH~~~ItsLafSPdg~-lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVW 229 (1630)
.+-...+..++|+|+.. ++++....+.|..++. +++.++.+.. ..... .+++..++.++++.-+++.+.++
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E-----gI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE-----GITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-----EEEE-STTEEEEEETTTTEEEEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-----eEEEECCCEEEEEEcCCCcEEEE
Confidence 34456699999999755 6677778888988886 4788888764 45566 88998888888777678999999
Q ss_pred ECCCCCc----eeEEEee-----ccCCCeEEEEEeCCCCEEEEEECCCceEEEEeee
Q 000346 230 DVSIERP----SMIGIIQ-----VGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 230 Dl~tgk~----~lv~tL~-----gH~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~~ 277 (1630)
++..... .-+..+. .+...+-.++|.+.++.|+.+-+..-..+|.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 8843211 0011121 2445689999999888887888887778887764
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.66 Score=52.74 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcEEE-EEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeecc
Q 000346 168 LPVLYVAYADGLIRAYNIHTYAVHY-TLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 168 g~lLaSgS~DGtIrIWDl~t~~~i~-tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH 245 (1630)
+..+++|+.+|.|.+|.......+. .... ...|. +.+.--.++.+.++++.||.|+.|++...+. +.....|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~----~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID----LGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccce----eccccccccceeEEeccCCceeeeccccCce--eeeeccc
Confidence 4568889999999999876221111 1111 22332 1222233556888999999999999998874 5556666
Q ss_pred C-CCeEEEEEeCCCCEEEEE--ECCCceEEEEeeeec
Q 000346 246 S-QPITSVAWLPMLRLLVTL--CRDGSLQVWKTRVII 279 (1630)
Q Consensus 246 ~-~~VssVsfSPdG~lLaSg--S~DGtIrIWDl~~~~ 279 (1630)
. .++.....+..+++++.+ |.|..++.|++....
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 6 566666666667777777 778888888776433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.71 E-value=6.3 Score=51.47 Aligned_cols=203 Identities=13% Similarity=0.144 Sum_probs=99.9
Q ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE---EEEEcCCCCeEEeecCCeEEEEE
Q 000346 44 IIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---FVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 44 I~VWDl~tg~~i~tl~-~~~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~---~v~fspdg~~asgs~Dgtv~L~~ 119 (1630)
|+||++. |+.+..+. .|+.+..+.|+.+ ..|++...||++++|++-.... ++.+. ......+.+++
T Consensus 66 I~If~~s-G~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e-------~~~~~I~ec~~ 135 (829)
T KOG2280|consen 66 IRIFNIS-GQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIESNSVGFE-------SQMSDIVECRF 135 (829)
T ss_pred EEEEecc-ccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecchhhhcccccccc-------cccCceeEEEE
Confidence 7888876 66666665 5579999999987 5667777999999999743321 11111 11122344555
Q ss_pred cCCCCEEEEEecCCcEEEEEEcccCCccceeeec---CCCCCeEEEEEcCCCC---EEEEEe-CCCeEEEEEcCCCc-EE
Q 000346 120 TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT---DLKKPIVNLACHPRLP---VLYVAY-ADGLIRAYNIHTYA-VH 191 (1630)
Q Consensus 120 spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~---gH~~~ItsLafSPdg~---lLaSgS-~DGtIrIWDl~t~~-~i 191 (1630)
..+|-.+.+.+++ .+.+-+.... ....+. +....-.|....+++. .++-.. ..+ ..++...... ..
T Consensus 136 f~~GVavlt~~g~--v~~i~~~~~~---~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQ--VILINGVEEP---KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred ecCceEEEecCCc--EEEEcCCCcc---hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence 5555333333222 2222222221 111111 1111112222222211 111110 000 0111111111 01
Q ss_pred EEEec-CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECCCce
Q 000346 192 YTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 192 ~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
..+.. ...+. .+..||+.++|+.=+.+|.|.+-+....++.|-.....|.-+ -.++|+ +.|-.+
T Consensus 210 ~~~~~~~~~~~-----ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wc---------gndaVv 274 (829)
T KOG2280|consen 210 HALSWPNSSVV-----KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWC---------GNDAVV 274 (829)
T ss_pred cccCCCCceEE-----EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-Hhceee---------cCCceE
Confidence 11111 23344 789999999999999999999888776664222222233222 255554 445566
Q ss_pred EEEEeee
Q 000346 271 QVWKTRV 277 (1630)
Q Consensus 271 rIWDl~~ 277 (1630)
.+|+.+.
T Consensus 275 l~~e~~l 281 (829)
T KOG2280|consen 275 LSWEVNL 281 (829)
T ss_pred EEEeeeE
Confidence 6787663
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.34 E-value=48 Score=38.43 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=65.9
Q ss_pred EEEEEcCCCCEEE-EEeCCCeEEEEE--cCCC-----cEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEEC
Q 000346 160 VNLACHPRLPVLY-VAYADGLIRAYN--IHTY-----AVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1630)
Q Consensus 160 tsLafSPdg~lLa-SgS~DGtIrIWD--l~t~-----~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl 231 (1630)
..++|+.+.+.+. +-+.+-+|.-|| ..++ +.+..++...+-.---.-.++..-+|++.+++-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 5688988777654 455777888888 4444 3333333210000000013455668888888888999999999
Q ss_pred CCCCceeEEEeeccCCCeEEEEEeC-CCCEEEE
Q 000346 232 SIERPSMIGIIQVGSQPITSVAWLP-MLRLLVT 263 (1630)
Q Consensus 232 ~tgk~~lv~tL~gH~~~VssVsfSP-dG~lLaS 263 (1630)
.+++. +..+.-.+..|++++|-- +-..+.+
T Consensus 241 ~tGK~--L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 241 TTGKI--LLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCCcE--EEEEEcCCCceEEEEecCCCccEEEE
Confidence 99994 777777788999999964 3344433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.27 E-value=32 Score=41.64 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=97.7
Q ss_pred EEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcc
Q 000346 68 AYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA 147 (1630)
Q Consensus 68 afSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~ 147 (1630)
.|.++.+.++.+--..+.|.-|+..+++..+.-.|..-. .+.....+..|+++.... .+++..++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~---------~~~~~d~~g~Lv~~~~g~---~~~~~~~~~-- 96 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFS---------SGALIDAGGRLIACEHGV---RLLDPDTGG-- 96 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcc---------cceeecCCCeEEEEcccc---EEEeccCCc--
Confidence 466763335555556678888887766554433433221 111122222333333322 455554442
Q ss_pred ceeee----cCC-CCCeEEEEEcCCCCEEEEEeC-----C----CeEEEEEcC-CCcEEEEEec-CCceeecCcccEEEc
Q 000346 148 PTKIK----TDL-KKPIVNLACHPRLPVLYVAYA-----D----GLIRAYNIH-TYAVHYTLQL-DNTIKLLGAGAFAFH 211 (1630)
Q Consensus 148 ~i~il----~gH-~~~ItsLafSPdg~lLaSgS~-----D----GtIrIWDl~-t~~~i~tL~~-~~~V~IsGi~sVafS 211 (1630)
.+..+ .+. ....+.+.++|+|.+.+.... . ..-.+|-+. .+...+.+.. -..-+ .++||
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-----Gla~S 171 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-----GLAFS 171 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-----ceEEC
Confidence 11111 111 234567888999886664433 0 111344444 4444444443 22223 89999
Q ss_pred CCCCEEEEEeC-CCeEEEEECCC--CC---ceeEEEeeccCCCeEEEEEeCCCCEEEEEECCC-ceEEEEee
Q 000346 212 PTLEWLFVGDR-RGTLLAWDVSI--ER---PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG-SLQVWKTR 276 (1630)
Q Consensus 212 PDg~~LaSgS~-DGtVrVWDl~t--gk---~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~DG-tIrIWDl~ 276 (1630)
||++.|+.+.. .+.|.-|++.. +. ......+..+.+..-.++...+|.+.+++-.+| .|.+|+..
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 99988887765 47777777652 21 101112222335556677777777776444444 67777654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=88.90 E-value=58 Score=44.29 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=109.6
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCe-E--EeecCCeEEEEEc--------------CCCCEEEEEecCCcEE
Q 000346 74 GHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM-E--SISVDTEVHLALT--------------PLQPVVFFGFHRRMSV 136 (1630)
Q Consensus 74 g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~-a--sgs~Dgtv~L~~s--------------pdg~~LaSgs~Dg~tI 136 (1630)
+..+..++.++.|.-.|..+|+..-.+.+.... . ......-+.++.. ..+..|+.++.|+ .+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg-~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA-RL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC-eE
Confidence 356777778899999999999875555554432 1 0000011222222 1334788888888 88
Q ss_pred EEEEcccCCccceeeecCCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEEcCCCcEE
Q 000346 137 TVVGTVEGGRAPTKIKTDLKKPI-------------VNLACHP--RLPVLYVAYA----------DGLIRAYNIHTYAVH 191 (1630)
Q Consensus 137 ~IwDl~sg~~~~i~il~gH~~~I-------------tsLafSP--dg~lLaSgS~----------DGtIrIWDl~t~~~i 191 (1630)
.-.|..++. ....+. ..+.| ..+.-.| .+..+++|+. +|.|+-+|.++|+.+
T Consensus 273 iALDA~TGk--~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 273 IALDADTGK--LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEECCCCC--EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 888888883 332221 11111 1112222 2345666642 688999999999999
Q ss_pred EEEecC----------CceeecC---c-ccEEEcCCCCEEEEEeC------------------CCeEEEEECCCCCceeE
Q 000346 192 YTLQLD----------NTIKLLG---A-GAFAFHPTLEWLFVGDR------------------RGTLLAWDVSIERPSMI 239 (1630)
Q Consensus 192 ~tL~~~----------~~V~IsG---i-~sVafSPDg~~LaSgS~------------------DGtVrVWDl~tgk~~lv 239 (1630)
..+... +.....| . ...+++++...++.+.. .+.|.-.|.+|++..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 887631 1111001 1 23466665555444321 34566678888874222
Q ss_pred EEeeccCC-------CeEEEEEeC-CCC---EEEEEECCCceEEEEeeee
Q 000346 240 GIIQVGSQ-------PITSVAWLP-MLR---LLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 240 ~tL~gH~~-------~VssVsfSP-dG~---lLaSgS~DGtIrIWDl~~~ 278 (1630)
.....|.. ...-+.+.. +|+ .++.++.+|.+++.|-++.
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 22222321 111122322 553 7888999999999987643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=88.81 E-value=63 Score=39.12 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=104.4
Q ss_pred CcEEEEEcCCCCEEEEEECCeEEEEECCCCcEEEEEc--CC----CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcE
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASID--IN----SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~GtI~VWDl~tg~~i~tl~--~~----~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~ 96 (1630)
.+..|.|..+..-+++|..+.|. -..+.|+.-.... .. -..++|.|..+ ..+++| ..+.| +...+.|+.
T Consensus 18 ~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG-~~g~l-l~T~DgG~t 92 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVG-EPGLL-LHTTDGGKT 92 (302)
T ss_dssp -EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S-----EEEEEEEETT--EEEEEE-ETTEE-EEESSTTSS
T ss_pred ceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCccceeeEEEEEecCC--ceEEEc-CCceE-EEecCCCCC
Confidence 68899999777777777777632 2233333222211 11 23677888654 445555 44433 333344433
Q ss_pred --EEEEcC--CCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 000346 97 --FVLHSP--EKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 97 --~v~fsp--dg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLa 172 (1630)
.+..+. .+.. ..+....++..++ .+..+ .+|....+...-......-...+..+.-++||.+++
T Consensus 93 W~~v~l~~~lpgs~--------~~i~~l~~~~~~l-~~~~G---~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~va 160 (302)
T PF14870_consen 93 WERVPLSSKLPGSP--------FGITALGDGSAEL-AGDRG---AIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVA 160 (302)
T ss_dssp -EE----TT-SS-E--------EEEEEEETTEEEE-EETT-----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEE
T ss_pred cEEeecCCCCCCCe--------eEEEEcCCCcEEE-EcCCC---cEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEE
Confidence 221211 1111 1122222222222 22333 344444443233444445567889999999999999
Q ss_pred EEeCCCeEEEEEcCC--CcEEEEEecCCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCC-CCceeE--EEeeccCC
Q 000346 173 VAYADGLIRAYNIHT--YAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSI-ERPSMI--GIIQVGSQ 247 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t--~~~i~tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~t-gk~~lv--~tL~gH~~ 247 (1630)
+++......-||-.. ..+. .......|. .+.|.|++...+.+ ..|.|+.=+... .+.+-. ..+.....
T Consensus 161 vs~~G~~~~s~~~G~~~w~~~-~r~~~~riq-----~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 161 VSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQ-----SMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp EETTSSEEEEE-TT-SS-EEE-E--SSS-EE-----EEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred EECcccEEEEecCCCccceEE-ccCccceeh-----hceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 887766677887542 2222 222367888 99999998765544 788888776221 111000 00111234
Q ss_pred CeEEEEEeCCCCEEEEEECCCce
Q 000346 248 PITSVAWLPMLRLLVTLCRDGSL 270 (1630)
Q Consensus 248 ~VssVsfSPdG~lLaSgS~DGtI 270 (1630)
.+..++|.+++...++|+ .|++
T Consensus 234 ~~ld~a~~~~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGG-SGTL 255 (302)
T ss_dssp -EEEEEESSSS-EEEEES-TT-E
T ss_pred eeEEEEecCCCCEEEEeC-CccE
Confidence 578999999987777655 5555
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=88.76 E-value=4.3 Score=50.67 Aligned_cols=147 Identities=15% Similarity=0.271 Sum_probs=82.4
Q ss_pred CEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCeEEeecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcc
Q 000346 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTV 142 (1630)
Q Consensus 63 ~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~ 142 (1630)
.|+.+.|.++ ..-|++|...|.|.+|.+...+..- .+......|...+-.-+.++ .+ .+.|+.
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~-----~~~~~~~~~~~~~~~~~~~~--------~~---~l~di~ 65 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYG-----NREQPPDLDYNFRRFSLNNS--------PG---KLTDIS 65 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE-----------------------S--GGGS--------S----SEEE-G
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCC-----ccCCCcccCcccccccccCC--------Cc---ceEEeh
Confidence 5889999998 7788889999999999875432210 00000001100000001111 01 222222
Q ss_pred cC-------CccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec-C--------CceeecCcc
Q 000346 143 EG-------GRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-D--------NTIKLLGAG 206 (1630)
Q Consensus 143 sg-------~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~-~--------~~V~IsGi~ 206 (1630)
.. ...+...+....++|++++.| |=-++++|+.+|++.|.|+|....++.-.- + ..++
T Consensus 66 ~r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt----- 139 (395)
T PF08596_consen 66 DRAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT----- 139 (395)
T ss_dssp GG--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-----
T ss_pred hhCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-----
Confidence 11 013444445557899999997 555999999999999999999988887442 2 1333
Q ss_pred cEEEcC-----CC---CEEEEEeCCCeEEEEECC
Q 000346 207 AFAFHP-----TL---EWLFVGDRRGTLLAWDVS 232 (1630)
Q Consensus 207 sVafSP-----Dg---~~LaSgS~DGtVrVWDl~ 232 (1630)
++.|.. |+ ..|++|+..|.+.+|.+.
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 666652 43 578888989999988765
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.71 E-value=31 Score=44.85 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=107.9
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEEcCCCCe-EE---eecCCeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCcccee
Q 000346 75 HAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM-ES---ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150 (1630)
Q Consensus 75 ~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~-as---gs~Dgtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~ 150 (1630)
..++.++.++.|+-.|..+|+..-.+...... .. +.......+.. .+..++.++.++ .+..+|..++. .+-
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg-~l~ALDa~TGk--~~W 144 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDA-RLVALDAKTGK--VVW 144 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCC-EEEEEECCCCC--EEe
Confidence 46666777889999999999775444433221 10 00000011111 124677777888 88999988883 332
Q ss_pred eec--CCCCCeEEEEEcC---CCCEEEEEeC------CCeEEEEEcCCCcEEEEEec-CCc-------------------
Q 000346 151 IKT--DLKKPIVNLACHP---RLPVLYVAYA------DGLIRAYNIHTYAVHYTLQL-DNT------------------- 199 (1630)
Q Consensus 151 il~--gH~~~ItsLafSP---dg~lLaSgS~------DGtIrIWDl~t~~~i~tL~~-~~~------------------- 199 (1630)
... .+... ..+.-+| ++ .+++++. +|.|..+|.++++.+..+.. ...
T Consensus 145 ~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 145 SKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 221 11110 1111122 34 4555442 68999999999998877654 110
Q ss_pred ----eee-cC--c-ccEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCCceeEEEeeccCCC-------
Q 000346 200 ----IKL-LG--A-GAFAFHPTLEWLFVGDRR-----G-----------TLLAWDVSIERPSMIGIIQVGSQP------- 248 (1630)
Q Consensus 200 ----V~I-sG--i-~sVafSPDg~~LaSgS~D-----G-----------tVrVWDl~tgk~~lv~tL~gH~~~------- 248 (1630)
..- .| + ..+++.|...+++.+..+ + +|.-.|++|++..-......|...
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 000 00 0 245777776777666522 1 566778888874222233333311
Q ss_pred eEEEEEeCCCC---EEEEEECCCceEEEEeeee
Q 000346 249 ITSVAWLPMLR---LLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 249 VssVsfSPdG~---lLaSgS~DGtIrIWDl~~~ 278 (1630)
..-+....+|+ .++.++.+|.+++.|-.+.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 11122224665 7888999999999987643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=87.49 E-value=55 Score=38.81 Aligned_cols=227 Identities=15% Similarity=0.082 Sum_probs=128.5
Q ss_pred CcEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEcCC-CCEEEEEEeCCCCCEEEEEECCCeEEEEECCCCcEEEEE
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~~~-~~VtsVafSpd~g~lLaSgS~DGtIrVWDl~tge~~v~f 100 (1630)
....++-.|||..-+++.. +.|--.|-.+|+....--+. ..-..|..-||++.||.-++. .|.-.|-++.+. ..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~ev-t~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEV-TRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccce-EEe
Confidence 6778889999987777777 66888898999865544444 667788888984444433322 565566655544 111
Q ss_pred -----cCCCCeEEeecCCeEEEEEcCCCCEEEEEe---cCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEE
Q 000346 101 -----SPEKKMESISVDTEVHLALTPLQPVVFFGF---HRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172 (1630)
Q Consensus 101 -----spdg~~asgs~Dgtv~L~~spdg~~LaSgs---~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLa 172 (1630)
+.+..+-+...|..=.+||..... +.|- ..+ .|++|+.-.+ ..-+.++..|||...+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G--~yGrLdPa~~-~i~vfpaPqG------------~gpyGi~atpdGsvwy 204 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIG--AYGRLDPARN-VISVFPAPQG------------GGPYGICATPDGSVWY 204 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccc--cceecCcccC-ceeeeccCCC------------CCCcceEECCCCcEEE
Confidence 111111111222222333322210 0000 011 3455554433 3456788999999888
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec----CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEECCCCCceeEEEeeccCCC
Q 000346 173 VAYADGLIRAYNIHTYAVHYTLQL----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP 248 (1630)
Q Consensus 173 SgS~DGtIrIWDl~t~~~i~tL~~----~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl~tgk~~lv~tL~gH~~~ 248 (1630)
+.-.+..|-..|..++.. ..+.. ....+ .+.-+|.|+.-++....+.+..+|-.+... ....+.+....
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~gsR-----riwsdpig~~wittwg~g~l~rfdPs~~sW-~eypLPgs~ar 277 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAGSR-----RIWSDPIGRAWITTWGTGSLHRFDPSVTSW-IEYPLPGSKAR 277 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCccccccc-----ccccCccCcEEEeccCCceeeEeCcccccc-eeeeCCCCCCC
Confidence 777777888888776632 23322 12222 556677888888877788888888876652 34445554445
Q ss_pred eEEEEEeCCCCEEEEEECCCceEEEE
Q 000346 249 ITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 249 VssVsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
-.++.....++.-.+--..|.|.-+|
T Consensus 278 pys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecC
Confidence 55566555555444333334444343
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=2.7 Score=51.33 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=33.8
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 000346 878 AIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIA 938 (1630)
Q Consensus 878 A~~~g~l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~lg~~al~~g~~~~a~~~~~~~~ 938 (1630)
++..|+++.|++.+++.-.. .| ..+.-|..||......|+++.|.+.|+++-
T Consensus 45 ~~~~~~~~~A~~~~~~al~~---~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV---DP------ETVELHLALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc---Cc------ccHHHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 45567777777777765421 11 124455668888888888888887777654
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=85.48 E-value=25 Score=41.06 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=83.9
Q ss_pred CCCCEEEEEecCCcEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEE-------
Q 000346 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT------- 193 (1630)
Q Consensus 121 pdg~~LaSgs~Dg~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~t------- 193 (1630)
..++.++.|+++| +.+++..... ...+... ...|..+...++-+.+++-+ |+.+.++++........
T Consensus 5 ~~~~~L~vGt~~G--l~~~~~~~~~-~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG--LYVYDLSDPS-KPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC--EEEEEecCCc-cceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3457888887777 6777773221 3333333 33499999999887777665 59999999886544331
Q ss_pred --------EecCCceeecCcccEE---EcCCCCEEEEEeCCCeEEEEECCCC--Cc-eeEEEeeccCCCeEEEEEeCCCC
Q 000346 194 --------LQLDNTIKLLGAGAFA---FHPTLEWLFVGDRRGTLLAWDVSIE--RP-SMIGIIQVGSQPITSVAWLPMLR 259 (1630)
Q Consensus 194 --------L~~~~~V~IsGi~sVa---fSPDg~~LaSgS~DGtVrVWDl~tg--k~-~lv~tL~gH~~~VssVsfSPdG~ 259 (1630)
+.....+. .++ -......|+++ ...+|.+|..... +. ...+.+.. ...+.++.|. ++
T Consensus 79 ~~~~~~~~~~~~~~v~-----~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~ 149 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVS-----FFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccccccCCee-----EEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CC
Confidence 11123333 333 11233444444 4568998877653 21 23444443 4778899998 45
Q ss_pred EEEEEECCCceEEEEee
Q 000346 260 LLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 260 lLaSgS~DGtIrIWDl~ 276 (1630)
.|+.|..+ ...+.|+.
T Consensus 150 ~i~v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 150 KICVGTSK-GFYLIDLN 165 (275)
T ss_pred EEEEEeCC-ceEEEecC
Confidence 67776644 35566654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=85.09 E-value=25 Score=45.33 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=73.5
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCeEEEEEcCC-----CcEEE--EEecCCceeecCcccEEEcCCCCEEEEEeCCCe
Q 000346 157 KPIVNLACHPR----LPVLYVAYADGLIRAYNIHT-----YAVHY--TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1630)
Q Consensus 157 ~~ItsLafSPd----g~lLaSgS~DGtIrIWDl~t-----~~~i~--tL~~~~~V~IsGi~sVafSPDg~~LaSgS~DGt 225 (1630)
..|..+.|.|- ...+........|.||.+.. .+.+. +-+.....- .=...+.|||....|++-+.+..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p-vLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP-VLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc-cCCCcccccCCCceEEEEecCce
Confidence 45889999993 33444455678999998762 12221 111111110 00125689999998887776555
Q ss_pred EEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEECC-CceEEEEee
Q 000346 226 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD-GSLQVWKTR 276 (1630)
Q Consensus 226 VrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS~D-GtIrIWDl~ 276 (1630)
-.+++++.....+...+. ..+.|.|.+|..||+.|+.+-.. =.-+|||-.
T Consensus 136 SV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 556677765443444454 36789999999999987665433 356789854
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.8 Score=37.75 Aligned_cols=31 Identities=19% Similarity=0.552 Sum_probs=28.3
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 246 SQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 246 ~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
...|..++|+|...+||.++.||.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999874
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=84.82 E-value=58 Score=42.18 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCCcEEEEEcCCCCEEEEEEC-CeEEEEECCCC--cEEEEEcCCCCEEEEEEeCCCCCEEEEE-ECCCeEEEEECC
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTG--SRIASIDINSPVVRMAYSPTSGHAVVAI-LEDCTIRSCDFD 92 (1630)
Q Consensus 21 p~rV~~LaFSPdG~lLasgs~-GtI~VWDl~tg--~~i~tl~~~~~VtsVafSpd~g~lLaSg-S~DGtIrVWDl~ 92 (1630)
|.=..++.|||....|++-.. +.-.++++... +....++..+.|.|.+|..| |+.|+.+ +..=.-++||-.
T Consensus 112 pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D-G~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 112 PVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD-GQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc-CCEEEEEeCCeEEEEEecCc
Confidence 445668899999999888777 44455565533 34444556699999999999 6665554 443445677743
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=84.46 E-value=2.1 Score=37.31 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcE
Q 000346 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAV 190 (1630)
Q Consensus 156 ~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~ 190 (1630)
...|.+++|+|...+||.++.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=22 Score=46.57 Aligned_cols=184 Identities=10% Similarity=-0.041 Sum_probs=90.0
Q ss_pred CCCEEEEEECC-------eEEEEECCCCcEEEEEc-CCCCE-EEEEEeCCCCCEEEEEECCC-----eEEEEECCCCcEE
Q 000346 32 NQALIAVAIGT-------YIIEFDTLTGSRIASID-INSPV-VRMAYSPTSGHAVVAILEDC-----TIRSCDFDTEQSF 97 (1630)
Q Consensus 32 dG~lLasgs~G-------tI~VWDl~tg~~i~tl~-~~~~V-tsVafSpd~g~lLaSgS~DG-----tIrVWDl~tge~~ 97 (1630)
++.++++|+.+ .+..||..++.....-. ....- .+++. -+ +.+.+.||.++ ++..||..+++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-ID-DTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-EC-CEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 45666666631 27788888776533222 11111 12222 23 67888888654 4788888776541
Q ss_pred E-EEcCCCCe--EEeecCCeEEEEEcCCCCEEEEEecC----------------------CcEEEEEEcccCCccceeee
Q 000346 98 V-LHSPEKKM--ESISVDTEVHLALTPLQPVVFFGFHR----------------------RMSVTVVGTVEGGRAPTKIK 152 (1630)
Q Consensus 98 v-~fspdg~~--asgs~Dgtv~L~~spdg~~LaSgs~D----------------------g~tI~IwDl~sg~~~~i~il 152 (1630)
. .--|..+. ..... ++.+.+.|+.+ ...+..||..+.....+..+
T Consensus 381 ~~~~mp~~r~~~~~~~~----------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m 450 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL----------DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450 (557)
T ss_pred ECCCCCcccccccEEEE----------CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence 1 00011111 11111 22233333221 11577888876632222222
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCC-C--cEEEEEec-CCceeecCcccEEEcCCCCEEEEEeC
Q 000346 153 TDLKKPIVNLACHPRLPVLYVAYAD------GLIRAYNIHT-Y--AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1630)
Q Consensus 153 ~gH~~~ItsLafSPdg~lLaSgS~D------GtIrIWDl~t-~--~~i~tL~~-~~~V~IsGi~sVafSPDg~~LaSgS~ 222 (1630)
.........+.+ ++.+.+.|+.+ ..+..||..+ . ..+..+.. .... .++.. +++..++|+.
T Consensus 451 ~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~------~~~~~-~~~iyv~Gg~ 521 (557)
T PHA02713 451 WTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL------HTILH-DNTIMMLHCY 521 (557)
T ss_pred CcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc------eeEEE-CCEEEEEeee
Confidence 111111111222 56666666643 2467788775 2 33333322 1111 22222 6788889988
Q ss_pred CC--eEEEEECCCCCc
Q 000346 223 RG--TLLAWDVSIERP 236 (1630)
Q Consensus 223 DG--tVrVWDl~tgk~ 236 (1630)
++ ++..||..+.+.
T Consensus 522 ~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 522 ESYMLQDTFNVYTYEW 537 (557)
T ss_pred cceeehhhcCcccccc
Confidence 88 788889888775
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.34 E-value=4.6 Score=52.46 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=10.6
Q ss_pred cCChhHHHHHHHHHh
Q 000346 924 YGQFDSAKETFEVIA 938 (1630)
Q Consensus 924 ~g~~~~a~~~~~~~~ 938 (1630)
.+++|.|-+||+.+.
T Consensus 378 r~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 378 RAEMDDANEVFELLA 392 (1102)
T ss_pred hhhhccHHHHHHHHH
Confidence 456788888887654
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.53 E-value=88 Score=37.80 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHh
Q 000346 1418 CFKTGLAHLEQNQLPDALSCFDEAFLALAKDHSRGADVKAQATICAQYKIAVT 1470 (1630)
Q Consensus 1418 ~lk~g~~~~~~gkf~ea~~~F~~il~~~v~~~~e~~e~~~~i~icreY~~a~~ 1470 (1630)
.+..|..-..+|.+.+|++....+|+++-.++--.++- ||.-|-+|.
T Consensus 376 AIsrAvsdASaGDy~~AiETllTAI~lIKqSrv~~DdR------CrvLissL~ 422 (498)
T KOG4849|consen 376 AISRAVSDASAGDYKGAIETLLTAIQLIKQSRVGHDDR------CRVLISSLE 422 (498)
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHhhccccchH------HHHHHHHHH
Confidence 35567777789999999999999998554444332222 555555544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.67 E-value=24 Score=42.10 Aligned_cols=118 Identities=11% Similarity=0.153 Sum_probs=86.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcEEEEEec--CCceeecCcccEEEcCCCCEEEEEeCCCeEEEEEC
Q 000346 154 DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDV 231 (1630)
Q Consensus 154 gH~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~~~i~tL~~--~~~V~IsGi~sVafSPDg~~LaSgS~DGtVrVWDl 231 (1630)
+....+.++.|+|+.+.|++......-.||=...|..++++.. -..-. .+.|..++++.++--+++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-----~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-----TIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-----HeEEecCCEEEEEehhcceEEEEEE
Confidence 3455699999999999888777777666776677899988875 33334 7889889988888888999998877
Q ss_pred CCCCcee-----EEEee--cc-CCCeEEEEEeCCCCEEEEEECCCceEEEEee
Q 000346 232 SIERPSM-----IGIIQ--VG-SQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 232 ~tgk~~l-----v~tL~--gH-~~~VssVsfSPdG~lLaSgS~DGtIrIWDl~ 276 (1630)
......+ .-.+. .+ ......++|.|..+.|..+-+-.-+.|+.+.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 6542100 01111 12 4567789999999988888888888888776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.81 E-value=35 Score=44.17 Aligned_cols=188 Identities=11% Similarity=-0.036 Sum_probs=86.0
Q ss_pred CCCEEEEEEC-C------eEEEEECCCCcEEEEEcCC-CC-EEEEEEeCCCCCEEEEEECC-----CeEEEEECCCCcEE
Q 000346 32 NQALIAVAIG-T------YIIEFDTLTGSRIASIDIN-SP-VVRMAYSPTSGHAVVAILED-----CTIRSCDFDTEQSF 97 (1630)
Q Consensus 32 dG~lLasgs~-G------tI~VWDl~tg~~i~tl~~~-~~-VtsVafSpd~g~lLaSgS~D-----GtIrVWDl~tge~~ 97 (1630)
++.+++.|+. + .+..||..+++....-... .. -.+++. -+ +..++.||.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FN-NRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-EC-CEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4555666654 1 3778888877764332211 11 112222 24 6788888865 34667787766431
Q ss_pred EE-EcCCCCeEEeecCCeEEEEEcCCCCEEEEEecC--C---cEEEEEEcccCCccceeeecCCCCCeEEEEEcCCCCEE
Q 000346 98 VL-HSPEKKMESISVDTEVHLALTPLQPVVFFGFHR--R---MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 98 v~-fspdg~~asgs~Dgtv~L~~spdg~~LaSgs~D--g---~tI~IwDl~sg~~~~i~il~gH~~~ItsLafSPdg~lL 171 (1630)
.. -.|..+. + .... .-++.+.+.|+.. + ..+..||..+............... .+++. .++.++
T Consensus 372 ~~~~lp~~r~------~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iy 441 (534)
T PHA03098 372 EEPPLIFPRY------N-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIY 441 (534)
T ss_pred eCCCcCcCCc------c-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEE
Confidence 10 0011111 0 0111 1133444444421 0 2578888876521222111111111 12222 255566
Q ss_pred EEEeCC--------CeEEEEEcCCCcEEEEEecC-CceeecCcccEEEcCCCCEEEEEeCC-----CeEEEEECCCCCc
Q 000346 172 YVAYAD--------GLIRAYNIHTYAVHYTLQLD-NTIKLLGAGAFAFHPTLEWLFVGDRR-----GTLLAWDVSIERP 236 (1630)
Q Consensus 172 aSgS~D--------GtIrIWDl~t~~~i~tL~~~-~~V~IsGi~sVafSPDg~~LaSgS~D-----GtVrVWDl~tgk~ 236 (1630)
+.|+.+ ..+.+||..+.+-...-... .... ...+.+ +++.++.|+.+ +.|.+||..+.+.
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN---ASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc---ceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 666532 23788887765432211111 1111 112222 66777777653 4678888887664
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=80.75 E-value=48 Score=40.96 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=55.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----cEEEEEec---C-----CceeecCcccEEEcCCCCEEEEEeC
Q 000346 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY-----AVHYTLQL---D-----NTIKLLGAGAFAFHPTLEWLFVGDR 222 (1630)
Q Consensus 156 ~~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~-----~~i~tL~~---~-----~~V~IsGi~sVafSPDg~~LaSgS~ 222 (1630)
-.....+++.+++ |++++.+...++.|.... +....+.+ . ...+ .++|.|||.+.++-+.
T Consensus 71 l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-----~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 71 LSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-----SLAWGPDGWLYFNHGN 143 (367)
T ss_pred CCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-----CceECCCCCEEEeccc
Confidence 3456789999888 444555544444454321 22122222 1 2244 8999999986665442
Q ss_pred C-------------------CeEEEEECCCCCceeEEEeeccCCCeEEEEEeCCCCEEEEEE
Q 000346 223 R-------------------GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 223 D-------------------GtVrVWDl~tgk~~lv~tL~gH~~~VssVsfSPdG~lLaSgS 265 (1630)
. +.|.-+|...++ ...+.........++|+++|+++++-.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGK---LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCceeccCCCccCcccccCceEEEEecCCCe---EEEEecCcCCCccceECCCCCEEEEcc
Confidence 1 334444555444 223333335567899999999887644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.71 E-value=4.5 Score=46.28 Aligned_cols=94 Identities=7% Similarity=0.018 Sum_probs=52.6
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCe--EEeecC--CeEEEEEcCCCCEEEEEecCCcEEEEEEcccCCccce
Q 000346 74 GHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM--ESISVD--TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1630)
Q Consensus 74 g~lLaSgS~DGtIrVWDl~tge~~v~fspdg~~--asgs~D--gtv~L~~spdg~~LaSgs~Dg~tI~IwDl~sg~~~~i 149 (1630)
+..+++|+.||.|.+|+.... |.. ...+.. ..+.+....++.+..+++.++ .|+.|++.-. +..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~---------g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~--k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE---------GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPN--KVL 137 (238)
T ss_pred CceEEeecccceEEEecCCcc---------chHHHhhhcccccceeccccccccceeEEeccCC-ceeeeccccC--cee
Confidence 456889999999999997521 111 111111 113333444555788888888 8999998766 333
Q ss_pred eeecCCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 000346 150 KIKTDLK-KPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188 (1630)
Q Consensus 150 ~il~gH~-~~ItsLafSPdg~lLaSgS~DGtIrIWDl~t~ 188 (1630)
-....|. .++ ..+++.+.|+.|.+|++...
T Consensus 138 g~~g~h~~~~~---------e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 138 GYVGQHNFESG---------EELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred eeeccccCCCc---------ceeEEecCCceEEeeccccc
Confidence 3334444 233 33333444555555544433
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=80.66 E-value=22 Score=46.91 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=47.5
Q ss_pred cEEEEEcCCCCEEEEEEC-CeEEEEECCCCcEEEEEc--CCCCEEEEEEe--CCCCCEEEEEECCCeEEEEEC
Q 000346 24 PHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID--INSPVVRMAYS--PTSGHAVVAILEDCTIRSCDF 91 (1630)
Q Consensus 24 V~~LaFSPdG~lLasgs~-GtI~VWDl~tg~~i~tl~--~~~~VtsVafS--pd~g~lLaSgS~DGtIrVWDl 91 (1630)
+.-+.-|.-++..++-++ .++.|||...+.....-. .++.|.++.|. |+ ++.+++.|....|.++.-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC-CCEEEEEEcCcEEEEEEc
Confidence 344444555665555445 449999999887543333 45899999997 66 888888888899988863
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=80.19 E-value=3.5 Score=37.32 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=42.5
Q ss_pred HHhcCCHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhh
Q 000346 878 AIKALRFSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQFDSAKETFEVIADYE 941 (1630)
Q Consensus 878 A~~~g~l~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~lg~~al~~g~~~~a~~~~~~~~d~~ 941 (1630)
+++.|+++.|++++++...+.++. ..-|-.||...++.|+++.|++.++++-...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---------PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 478899999999999887543332 2344479999999999999999999887544
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 320 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-40
Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 15/229 (6%)
Query: 1396 NPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEAFLALA----KDHSR 1451
+ + P + + + +A+ F L++ +
Sbjct: 83 WKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQE 142
Query: 1452 GADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEMARLSRHLGSLPLQTKHR 1511
A+ + TIC +Y + +++ E R + P + + + ++ + LQ H
Sbjct: 143 IAEAQQLITICREYIVGLSM--ETERKKL---PKETLEQQKRICEMAAYFTHSNLQPVHM 197
Query: 1512 INCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQDELRSLIDMCVQRGLSNK---SID 1568
I +RTA+ +++N+ A LL P + + I ++ ++ + D
Sbjct: 198 ILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYD 257
Query: 1569 PLEDPSQFCAATLSRLSTIGYDV-CDLCGAKFSA-LSAPGCIICGMGSI 1615
+P CAA+ + C L GA +S C + + I
Sbjct: 258 M-HNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEI 305
|
| >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 8e-40
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 23/251 (9%)
Query: 1373 STQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLP 1432
+ P +L A + P VP + G + + N+
Sbjct: 79 PSTPCELPAQLGYVRAYDDTVSEDQILP-------YVPGLDVVNEKMNEGYKNFKLNKPD 131
Query: 1433 DALSCFDEAFLAL----AKDHSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAI 1488
A+ CF EA + D +Y + +++ E L++
Sbjct: 132 IAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKE-----GNT 186
Query: 1489 SAKDEMARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAPASKQD 1548
E+A L HR N ++ A+ ++ + +N+ A L + +
Sbjct: 187 VRMLELAAYFTKA---KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243
Query: 1549 E-LRSLIDMCVQRGLSNKSIDPLED-PSQFCAATLSRLSTIGYDV-CDLCGAKF-SALSA 1604
E R + + ID CAAT + V L G+K+
Sbjct: 244 EQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKD 303
Query: 1605 PGCIICGMGSI 1615
I + I
Sbjct: 304 KIDRIAMISKI 314
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 3e-12
Identities = 40/284 (14%), Positives = 85/284 (29%), Gaps = 42/284 (14%)
Query: 7 QHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTY---IIEFDTLTGSRIASIDINSP 63
+ L + +P AAF Q L+ AI T + + + ++ S
Sbjct: 4 KIFSLAETNKYGM-SSKPIAAAFDFTQNLL--AIATVTGEVHIYGQQQVEVVIKLEDRSA 60
Query: 64 VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ 123
+ M + G +V I T+ +++ K+ SI D + L LQ
Sbjct: 61 IKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118
Query: 124 --PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181
++ + R + ++ + + PIV++ +PR + + +
Sbjct: 119 NGSMIVYDIDRDQLSSFK--LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176
Query: 182 AYNIHTYAVHYTLQLDNTIKLLGAG--------------AFAFHPTLEWLFVGDRRGTLL 227
Y++ + + + G +HP + +L+
Sbjct: 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV 236
Query: 228 AWDVSIERP----------------SMIGIIQVGSQPITSVAWL 255
WD + I + I+ V W+
Sbjct: 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWM 280
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 3e-07
Identities = 31/301 (10%), Positives = 78/301 (25%), Gaps = 37/301 (12%)
Query: 28 AFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIR 87
F L+ + + + + ++ + + + + ++ L++ ++
Sbjct: 65 RFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIG-LQNGSMI 123
Query: 88 SCDFDTEQ--SFVLHSPEKKMESISVDTE--VHLALTPLQPVVFFGFH------------ 131
D D +Q SF L + +K + V + P +
Sbjct: 124 VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVEN 183
Query: 132 ---RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTY 188
+ + GG K ++ HP + + D + ++ ++
Sbjct: 184 EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243
Query: 189 AVHYTLQLDNT------IKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII 242
+ + T + + + + W +I
Sbjct: 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKI-----------SKVYWMCENNPEYTSLLI 292
Query: 243 QVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIP 302
S L M+ L T + NP + + + + IP
Sbjct: 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP 352
Query: 303 R 303
R
Sbjct: 353 R 353
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 6e-10
Identities = 109/764 (14%), Positives = 215/764 (28%), Gaps = 280/764 (36%)
Query: 257 MLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYP- 315
LRL TL V K F E + I+ ++S E P
Sbjct: 64 TLRLFWTLLSKQEEMVQK---------------FVE--EVLRINYKFLMSPIKTEQRQPS 106
Query: 316 LPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVLKE 375
+ +E RL DN Q+FA +R +
Sbjct: 107 MMTRMYIEQRDRLY-----------NDN-------------QVFAKYNVSR-------LQ 135
Query: 376 KLSSMGSSGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFMEGHAKSAPISRLP 435
+L+ L E L+ ++ I + G K+
Sbjct: 136 PY-----------LKLRQALLE--LRPAKNVLI-----------DGVLGSGKTW------ 165
Query: 436 LITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYVDGINLVAYNLCSGADSI 495
+ + VC + ++ + F+ +NL C+ +++
Sbjct: 166 VA-----------LDVCLSYKVQCKMDFK----------IFW---LNL---KNCNSPETV 198
Query: 496 YRKLYSTIPGTVEYYPKHMVYSKRQQLFLVVYEFSGTTNEVVLYRENVDTQLADSKSSTV 555
L Q+L Y+ + N+ ++ +
Sbjct: 199 LEML--------------------QKLL---YQIDPNWTSRSDHSSNIKLRIHS-----I 230
Query: 556 KGRDAAFIG--PNEDQFAILDD--DKTGLALY-----ILKGVTLQEAADENNGVVDHNQS 606
+ + P E+ +L + + + IL +T + V D +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTR-----FKQVTDFLSA 283
Query: 607 TDTNVGSVQGPLQLMFESEVDRIFST---------PIESTLMFACDGD--QIGM-AKLVQ 654
T S+ + EV + P E + ++ + A+ ++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSIIAESIR 338
Query: 655 GYRLSARAGHYLQTKSEGKKSIKLKVTEVMLKVAWQETQRGYVAGVLTTQRVLIVSADLD 714
A ++ + K + ++ + +L+ A E ++ + L
Sbjct: 339 DGL--ATWDNWKHVNCD-KLTTIIESSLNVLEPA--EYRKMFD--------------RLS 379
Query: 715 ILASSSTKFDKG--LPSFR-SLLWVGPALLFSTATAISVLGWDGKVRNILSISMPNAVLV 771
+ F +P+ SL+W +D +++ + V
Sbjct: 380 V-------FPPSAHIPTILLSLIW-----------------FDVIKSDVMVV-------V 408
Query: 772 GALNDRLLLANPTEINPRQKKG--IEIKSCLVGLLEPLLIGFATMQQYFEQKLDLSEIL- 828
L+ L+ +Q K I I S + L L E + L +
Sbjct: 409 NKLHKYSLVE-------KQPKESTISIPSIYLELKVKL-----------ENEYALHRSIV 450
Query: 829 --YQITSRFDSLRITPRSLD--ILAKGPPVCGDLAVSLSQAGP-QFTQVLRGIYAIKALR 883
Y I FDS + P LD + L + + R ++ R
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTLFRMVFL--DFR 501
Query: 884 FSTALSVLKDEFLRSRDYPKCPPTSQLFHRFRQLGYACIKYGQF--DSAKETFEVIADYE 941
F K +R S + + +QL Y + D+ +E + +
Sbjct: 502 FLEQ----K---IRHDSTAWNASGS-ILNTLQQL----KFYKPYICDN-DPKYERLVN-- 546
Query: 942 SILDLFICHLNPSAMR-------RLAQRLEEEGANPELRRYCER 978
+ILD F+ + + + R+A E+E E + +R
Sbjct: 547 AILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-08
Identities = 90/560 (16%), Positives = 158/560 (28%), Gaps = 151/560 (26%)
Query: 3 WATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINS 62
+ Q +V R LQP+ QAL+ + ++ + G
Sbjct: 120 YNDNQVFAKYNVSR-----LQPYLKL---RQALLELRPAKNVL----IDG---------- 157
Query: 63 PVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKME------SISVDTEVH 116
+ SG VA+ S + + KM+ ++
Sbjct: 158 ----VL---GSGKTWVALD---VCLS-----------YKVQCKMDFKIFWLNLKNCNSPE 196
Query: 117 LALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP----VL- 171
L LQ ++ + ++ + L VL
Sbjct: 197 TVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 172 YVAYADGLIRAYNIH-----TYAVHYTLQLDNTIKLLGAGAFAFHPTLE---WLFVGDRR 223
V A A+N+ T T T L + A H +L+ D
Sbjct: 252 NVQNAK-AWNAFNLSCKILLT-----TRFKQVTDFL--SAATTTHISLDHHSMTLTPDEV 303
Query: 224 GTLLA-W-DVSIE--RPSMIGIIQVGSQPITSVAWLPM-LRLLVTLCRDG--SLQVWK-- 274
+LL + D + ++ P L ++ RDG + WK
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTN-------------PRRLSIIAESIRDGLATWDNWKHV 350
Query: 275 -----TRVI---INPNRPPMQANFFEPASI--ESIDIP-RILSQQGGEAVYPLPRVRALE 323
T +I +N P F+ S+ S IP +LS + + V +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 324 VHPRLNLAVLLFANFTGG-DNIKNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSMGS 382
+H + +L T +I E L + + + L
Sbjct: 411 LH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 383 SGILADHQLQAQLQEHHLKGHSHLTISDIARKAFLYSHFME------GHAKSAPISRLPL 436
H + HHLK H + R FL F+E A +A S L
Sbjct: 470 DQYFYSH-----IG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 437 IT--------IFDSKHQ----LKDIPVCQPFHLELNF-FNRENRVLHYPVRAFYVDGINL 483
+ I D+ + + I L+F E ++ Y D L
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAI---------LDFLPKIEENLICSK----YTD---L 567
Query: 484 VAYNLCSGADSIYRKLYSTI 503
+ L + ++I+ + + +
Sbjct: 568 LRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 4e-08
Identities = 93/694 (13%), Positives = 190/694 (27%), Gaps = 231/694 (33%)
Query: 6 VQHLDLRHVG---RG-------DHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTL--TGS 53
V + D + V + DH + + GT + F TL
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS------------GTLRL-FWTLLSKQE 76
Query: 54 RIA------SIDINSP--VVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV-LHSPEK 104
+ + IN + + + + + R ++ Q F +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRL 134
Query: 105 KMESISVDTEVHLALTPLQP---VVFFGFHRRM-----SVTVVGTVE----GGRAPTKI- 151
+ ++ AL L+P V+ G + + + + KI
Sbjct: 135 QPY-----LKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 152 ---------KTDLKKPIVNLACHPRLPVLYVAYADGLIRA-YNIHTYAVHYTLQLDNTIK 201
+ + + L + ++ + + +D IH + ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKL-LY-QIDPNWTSRSDHSSNIKLRIH--------SIQAELR 235
Query: 202 LLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ---VGSQPITSVAWLPML 258
L P L V +V + +
Sbjct: 236 RL----LKSKPYENCLLVLL--------NVQNAK-----AWNAFNLSC------------ 266
Query: 259 RLLVTLCRDGSL-----QVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAV 313
++L+T R + T + ++ + P E + L +
Sbjct: 267 KILLT-TRFKQVTDFLSAATTTHISLDHHSMT-----LTPD--EVKSL---LLKYLDCRP 315
Query: 314 YPLPRVRALEVHPRLNLAVLLFANFTGGDNIKNRAAYTREGRKQLFAVLQSARGSSASVL 373
LPR L +P + + ++I++ A T + K V
Sbjct: 316 QDLPR-EVLTTNP---RRLSII-----AESIRDGLA-TWDNWKH--------------VN 351
Query: 374 KEKLSSMGSSGILADHQLQAQLQEHHLKGHSHLTI----SDIARKAF--LYS-------- 419
+KL+++ S + + A+ ++ + L++ + I ++
Sbjct: 352 CDKLTTIIESSL--NVLEPAEYRKMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 420 HFMEG-HAKSAPISRLPLITIFDSKHQLKDIPVCQPFHLELNFFNRENRVLHYPVRAFYV 478
+ H S + + P +S + I +LEL LH + V
Sbjct: 406 VVVNKLHKYSL-VEKQP----KESTISIPSI------YLELKVKLENEYALHRSI----V 450
Query: 479 DGINLVAYNLCSGADSIYRKLYSTIPGTVEYYPKHMVY-------SKRQQLFLVVY---E 528
D YN+ + P +Y+ H+ + +R LF +V+
Sbjct: 451 D-----HYNIPKT----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 529 F-------SGTTNEVVLYRENVDTQLADSKSSTVKGRDAAFIGPNEDQFAILDDD----- 576
F T N QL K +I N+ ++ L +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKP---------YICDNDPKYERLVNAILDFL 552
Query: 577 -KTGLALYILKGVTLQEAA--DENNGVVD--HNQ 605
K L K L A E+ + + H Q
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 63/470 (13%), Positives = 129/470 (27%), Gaps = 125/470 (26%)
Query: 597 NNGVVDHNQST---DTNVGSVQGPLQLMFES-EVDRIFSTPIESTLMFACDGDQIGMAKL 652
++ + + + VQ + + E+D I + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----------------DAV 61
Query: 653 VQGYRLSARAGHYLQTKSEGKKSIKLKVTEVM------LKVAWQETQRGYVAGVLTTQRV 706
RL + S+ ++ ++ V EV+ L + QR +
Sbjct: 62 SGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMT 109
Query: 707 LIVSADLDILASSSTKFDKG-LPSFRSLLWVGPALL-FSTATAISVLGWDGKVRNILSIS 764
+ D L + + F K + + L + ALL A + + G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG------------ 157
Query: 765 MPNA---VLVG-ALND-RLLLANPTEI---NPRQKKGIEIKSCLVGLLEPLLIGFATMQQ 816
+ + + ++ +I N + E +LE L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE------TVLEMLQKLLYQIDP 211
Query: 817 YFEQKLDLS-------EILYQITSRFDSLRITPRSLDILA--KGPPV-------C----- 855
+ + D S + R + L +L + C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 856 -GDLAVSLSQAGPQFTQVLRGIYAIKALRFSTALSVLKDEFL--RSRDYPK--C---PPT 907
V+ T + + L S+L ++L R +D P+ P
Sbjct: 272 TRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRR 329
Query: 908 SQLFHRFRQLGYACIK-YGQFDSAKETFEVIADYESILDLFICHLNPSAMRRLAQRLE-- 964
+ + G A + + K +I++ + L P+ R++ RL
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDK--------LTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 965 EEGAN-PELRRYCERILRVRSTGWTQG-------IFANFAAESMVPKGPE 1006
A+ P + S W + S+V K P+
Sbjct: 382 PPSAHIPT---------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-04
Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 31/188 (16%)
Query: 1418 CFKTGLAHLEQNQLPDALSCFD-EAF-LALAKDHSRGADVKAQATICAQYKIAVTLLQEI 1475
KT +A L+ D + F L L +S ++ + Y+I
Sbjct: 161 SGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRS 217
Query: 1476 LRLQKVQGPSAAISAKDEMARL---SRHLGSLPL-----QTKHRIN-----CIRTAI-KR 1521
+ S + E+ RL + L L Q N C + + R
Sbjct: 218 DHSSNI--KLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSC-KILLTTR 273
Query: 1522 NMEVQNYAYAKQMLELLLSKAPAS-KQDELRSLIDMCVQRGLSNKSIDPLEDPSQFCAAT 1580
+V ++ A + L + DE++SL+ + P + P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVLTTN 326
Query: 1581 LSRLSTIG 1588
RLS I
Sbjct: 327 PRRLSIIA 334
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 54/270 (20%), Positives = 90/270 (33%), Gaps = 44/270 (16%)
Query: 23 QPHEAAFHPNQALIAVAIGT--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAI 80
P A P+ + VA + DT T + IA++ S +A SP V
Sbjct: 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTN 92
Query: 81 LEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEV-HLALTP--LQPVVFFGFHRRMSV- 136
+ T+ D + ++ LAL+P + V + +SV
Sbjct: 93 MASSTLSVIDTTS---------NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143
Query: 137 -----TVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADGLIRAYNIHTYAV 190
V+ TV GR+P +A P +YVA + I + T +V
Sbjct: 144 NTVTKAVINTVSVGRSPK-----------GIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192
Query: 191 HYTLQLDNTIKLLGAGAFAFHPTLEWLFV---GDRRGTLLAWDVSIERPSMIGIIQVGSQ 247
T++++ A +P +V T+ D + I VG
Sbjct: 193 IDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG--TNKITARIPVGPD 245
Query: 248 PITSVAWLPM-LRLLVTLCRDGSLQVWKTR 276
P +A P ++ V L ++ V T
Sbjct: 246 P-AGIAVTPDGKKVYVALSFXNTVSVIDTA 274
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 9e-07
Identities = 35/260 (13%), Positives = 75/260 (28%), Gaps = 22/260 (8%)
Query: 39 AIGTYIIEFDTLTGSRIASIDINS-PVVRMAYSPTSGHA-----VVAILEDCTIRSCD-- 90
I + + TL ++ +I + V + + + + ++ TI +
Sbjct: 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243
Query: 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTK 150
+ V EK ++S+ + L P + V + P+
Sbjct: 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFD-LTDPEVPSF 302
Query: 151 IKTDLKKPIVNLACHP---RLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGA 207
I++++ V+ DG +N A T L
Sbjct: 303 YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP-- 360
Query: 208 FAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 267
+ P + D +L A + + IT++ + +++ D
Sbjct: 361 VVYCPQIYSYIYSDGASSLRAVPSR--AAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD 418
Query: 268 GSLQVWKTRVIINPNRPPMQ 287
GSL + N R +
Sbjct: 419 GSLIIT------NAARRLLH 432
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 2/110 (1%)
Query: 1309 APNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPA 1368
A Q A P +PPQ + +G+P G P Q + L
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 1369 QVPPSTQPLDLSALGVPNSGD--SGKSPANPASPPTSVRPGQVPRGAAAS 1416
Q+ +T ++ L D + P P T ++ Q P A A
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-05
Identities = 27/179 (15%), Positives = 42/179 (23%), Gaps = 13/179 (7%)
Query: 1263 AQGQPIPEDFFQNTIPSLQVAASLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGL 1322
Q Q + QN P Q A +PP + G P Q P+
Sbjct: 10 PQAQL---QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMG------MPPQGAVPSMGQQQ 60
Query: 1323 PDGGVPPQIAPQPAIPVESIGLPDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSAL 1382
Q+ Q S + P Y +P Q+ Q +
Sbjct: 61 FLTPAQEQLHQQIDQATTS---MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ-QPM 116
Query: 1383 GVPNSGDSGKSPANPASPPTSVRPGQVPRGAAASVCFKTGLAHLEQNQLPDALSCFDEA 1441
P G + P + P + + T L + +
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 26/185 (14%), Positives = 46/185 (24%), Gaps = 15/185 (8%)
Query: 1230 APASSAPGDLFGTESWVQPASVSKPASAGSSVGAQGQPIPEDFFQNTIPSLQVAASLPPP 1289
+ QPA P ++ + GQ +P S+
Sbjct: 8 VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQM--------GMPPQGAVPSMGQQ 59
Query: 1290 GTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGLPDGGV 1349
+Q+ Q + + N + P+ + PQ+ Q P++ P +
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP---M 116
Query: 1350 PPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSVRPGQV 1409
+ GQ + P L +P P P P
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLT----ELPPPITDLTLPPPPLVIPPERMLVPS 172
Query: 1410 PRGAA 1414
A
Sbjct: 173 ELSNA 177
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 23/132 (17%), Positives = 34/132 (25%), Gaps = 3/132 (2%)
Query: 1285 SLPPPGTYLSKYDQVSQGVASGKVAPNQANAPAADSGLPDGGVPPQIAPQPAIPVESIGL 1344
S Y Q Q A+ P Q P + G Q+ P V S+G
Sbjct: 2 SHHKKRVYPQAQLQYGQN-ATPLQQPAQFMPPQDPA--AAGMSYGQMGMPPQGAVPSMGQ 58
Query: 1345 PDGGVPPQSSGQTPFPYQSQVLPAQVPPSTQPLDLSALGVPNSGDSGKSPANPASPPTSV 1404
P Q + + + +D +A P +P P +
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Query: 1405 RPGQVPRGAAAS 1416
P A
Sbjct: 119 PAYGQPSAAMGQ 130
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 34/266 (12%)
Query: 31 PNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90
+ + + + F T + + MAYS +A + +
Sbjct: 10 RLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGG 69
Query: 91 ----FDTEQSFVLHSPEKKMESISVDTEVH-LALTPLQPVVFFG--FHRRMSV------T 137
D + ++I D + + ++FG + ++
Sbjct: 70 VVYRLDPVT-------LEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE 122
Query: 138 VVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA--YADGLIRAYNIHTYAVHYTLQ 195
V G + + +P L +Y++ + +I + ++
Sbjct: 123 VKGRLVLDDRKRTEEVRPLQPRE-LVADDATNTVYISGIGKESVIWVVDGG------NIK 175
Query: 196 LDNTIKLLGAG--AFAFHPTLEWLFVGDRRGTLLAWDV-SIERPSMIGIIQVGSQPI-TS 251
L I+ G A + L+ + G L+ D + S ++ G + +
Sbjct: 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN 235
Query: 252 VAWLP-MLRLLVTLCRDGSLQVWKTR 276
++ R +T + + V TR
Sbjct: 236 ISLDTARQRAFITDSKAAEVLVVDTR 261
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 27/282 (9%), Positives = 66/282 (23%), Gaps = 57/282 (20%)
Query: 28 AFHPNQALIAVA-----IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE 82
P+++L+ + + Y + + S+ P++ + + +
Sbjct: 18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
Query: 83 DCTIRSCDFDTEQSFVL---HSPEKKM-ESISVDTE----------VHL--ALTPLQPVV 126
I D SF + + + + + V+
Sbjct: 78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137
Query: 127 FFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIH 186
+ V L V + ++ + +
Sbjct: 138 AVKNLNSNNTKV-------------------KNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 187 TYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVG--DRRGTLLAWDVSIE---------- 234
++ +K E D R + +D +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 235 ---RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273
R ++ P+ S+ + P + L T DG + W
Sbjct: 239 RCHRLNLKDTNLAY--PVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 38/288 (13%), Positives = 85/288 (29%), Gaps = 55/288 (19%)
Query: 6 VQHLDLRHVGRGDHKPLQPHEA-----AFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI 60
+ ++++ P + E ++ + I VA ++ FD T +A I
Sbjct: 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT 837
Query: 61 --NSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQ---SFVLH---------SPE-KK 105
+S + +SP H V L + + D+ H SP+
Sbjct: 838 GHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 106 MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACH 165
+ S D + + + + I K +++
Sbjct: 897 FLTASDDQTIRVW----------------------ETKKVCKNSAIVL---KQEIDVVFQ 931
Query: 166 PRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225
++ ++ T + Y + + P LE++ GD G
Sbjct: 932 ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS-------CCCLSPHLEYVAFGDEDGA 984
Query: 226 LLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273
+ ++ R + + + + + L++ D +QVW
Sbjct: 985 IKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 38/267 (14%), Positives = 76/267 (28%), Gaps = 65/267 (24%)
Query: 24 PHEAAFHPNQALIAVA--IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL 81
+ P + L+ + I I D T I D + S +A
Sbjct: 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA-- 271
Query: 82 EDCTIRSCDFDTEQSFVLHSPEKKMESISV-DTEVHLALTPLQPVVFFGFHRRMSVTVVG 140
F + E + + + ++
Sbjct: 272 --------------QFSASNQESGGGRLGIYSMD--------------------KEKLID 297
Query: 141 TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADGLIRAYNIHTYAVHYTLQLD-- 197
T+ ++ +YV+ I Y++ V ++ +
Sbjct: 298 TIGPPGNKR-----------HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDK 346
Query: 198 -NTIKLLGAGAFAF-------HPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 249
NTI L G + + HPT +L G G + D ++ + G+QP
Sbjct: 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT--TTDTVKEFWEAGNQP- 403
Query: 250 TSVAWLP-MLRLLVTLCRDGSLQVWKT 275
T + P L+++ D ++V++
Sbjct: 404 TGLDVSPDNRYLVISDFLDHQIRVYRR 430
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 15/163 (9%)
Query: 150 KIKTDLKKPIVNLACHPRLPVLYVAYA----DGLIRAYNIHTYAVHYTLQLD---NTIKL 202
+ +K PI +LA L +I +++ T++ Q L
Sbjct: 86 GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL 145
Query: 203 LGAG----AFAFHPTLEWLF-VGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM 257
AG ++PT+ + V G++ V+ + + +TSV W P
Sbjct: 146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT--ETVKVCATLPSTVAVTSVCWSPK 203
Query: 258 LRLLVTLCRDGSLQVWKTRVIINPNRP-PMQANFFEPASIESI 299
+ L ++G++ + + P P P + +
Sbjct: 204 GKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDV 246
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 3e-04
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 170 VLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL--EWLFVGDRRGTLL 227
L + Y I + T V +++D+ +++ H + E+ D RGT+
Sbjct: 96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYM---YGHNEVNTEYFIWADNRGTIG 152
Query: 228 AWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276
+ ++ + +S LL DG L V+
Sbjct: 153 FQSYEDDSQYIVHSAKSDV-EYSSGVLHKDSLLLALYSPDGILDVYNLS 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1630 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (152), Expect = 7e-11
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 156 KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLE 215
+ I + P D R +++ T DN I G + +F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--GITSVSFSKSGR 283
Query: 216 WLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273
L G WD + G++ ++ + + T D L++W
Sbjct: 284 LLLAGYDDFNCNVWDA--LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.6 bits (140), Expect = 2e-09
Identities = 44/264 (16%), Positives = 81/264 (30%), Gaps = 19/264 (7%)
Query: 20 KPLQPHEA-----AFHPNQALIAVA-IGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTS 73
+ L+ H A + + L+ A +I +D+ T +++ +I + S V S
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 74 GHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR 133
G+ V D + T + V S E + +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-------LDDNQIVTSS 161
Query: 134 MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT 193
T T T +++L+ P + D + +++ T
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 194 LQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSV 252
++ I A F P G T +D+ ++ M ITSV
Sbjct: 222 FTGHESDIN-----AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 253 AWLPMLRLLVTLCRDGSLQVWKTR 276
++ RLL+ D + VW
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/168 (10%), Positives = 37/168 (22%), Gaps = 16/168 (9%)
Query: 65 VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-FVLHSPEKKMESISVDTEVHLALTPLQ 123
V V+ D + + D E + +I + T
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--- 243
Query: 124 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAY 183
+ + T ++ I +++ +L Y D +
Sbjct: 244 ------GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 184 NIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWD 230
+ L DN + + G L W+
Sbjct: 298 DALKADRAGVLAGHDNRVS-----CLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.1 bits (144), Expect = 6e-10
Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 18/219 (8%)
Query: 67 MAYSPTSGHAVVAILEDCTIRSCDFDTEQ---SFVLHSPEKKMESISVDTEVHLALTPLQ 123
+G +V+ D TI+ + T +F H +M + D + + + Q
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165
Query: 124 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVN-------LACHPRLPVLYVAYA 176
V + + + + ++ P L
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225
Query: 177 DGLIRAYNIHTYAVHYTLQ-LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIER 235
D I+ +++ T TL DN ++ FH +++ TL WD +
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVR-----GVLFHSGGKFILSCADDKTLRVWD--YKN 278
Query: 236 PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274
+ + +TS+ + +VT D +++VW+
Sbjct: 279 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 1e-05
Identities = 35/267 (13%), Positives = 81/267 (30%), Gaps = 31/267 (11%)
Query: 28 AFHPNQALIAVAI--GTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCT 85
FHP +++ A T I +D TG ++ ++ V+ SG +
Sbjct: 24 IFHPVFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSVQDISFDHSGK------LLAS 76
Query: 86 IRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG 145
+ F + M + + +V + + + V T
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-- 134
Query: 146 RAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ---------- 195
K T ++ + + + ++ D +R + + T L+
Sbjct: 135 --CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 196 ------LDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPI 249
+ + G+ +L G R T+ WD + + + +
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD--VSTGMCLMTLVGHDNWV 250
Query: 250 TSVAWLPMLRLLVTLCRDGSLQVWKTR 276
V + + +++ D +L+VW +
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYK 277
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 5e-08
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 266
A++ + + + ++ S + + ++ + +T V W P +VT
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71
Query: 267 DGSLQVW 273
D + VW
Sbjct: 72 DRNAYVW 78
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 0.001
Identities = 12/142 (8%), Positives = 32/142 (22%), Gaps = 8/142 (5%)
Query: 153 TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFA 209
+ L +PI A + + + + + Y +L + +
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-----GVD 58
Query: 210 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 269
+ P + W + +I ++ V W P +
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118
Query: 270 LQVWKTRVIINPNRPPMQANFF 291
+ + +
Sbjct: 119 ISICYFEQENDWWVCKHIKKPI 140
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.0 bits (128), Expect = 8e-08
Identities = 30/270 (11%), Positives = 69/270 (25%), Gaps = 21/270 (7%)
Query: 28 AFHPNQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVR------MAYSPTSGHAV--VA 79
F + +A + GS +A + +S + + SP+S + V
Sbjct: 69 KFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 128
Query: 80 ILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVV 139
D + + + +K+ I E + P TV
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
Query: 140 GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNT 199
+ + + D +R ++ T + L +N
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248
Query: 200 IKLLGAG---AFAFHPTLEWLFVGDRRGTLLAWDVSIERP----------SMIGIIQVGS 246
+ F + + G ++ W++ +
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308
Query: 247 QPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276
+ SVA +++ +D + W +
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKK 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 2e-07
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 16/144 (11%)
Query: 147 APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG 206
+ + T K + ++ + D ++ +N+ + N+
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 207 --------AFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL--- 255
+ A E++ G + +L WD P + ++Q + SVA
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGS 362
Query: 256 ---PMLRLLVTLCRDGSLQVWKTR 276
P + T D ++WK +
Sbjct: 363 SLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.2 bits (118), Expect = 1e-06
Identities = 30/271 (11%), Positives = 76/271 (28%), Gaps = 19/271 (7%)
Query: 2 EWATVQHLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIGT-------------YIIEFD 48
+ T + L + + + AA P+ +A+ + +D
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 49 TLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMES 108
T SR + + + +A++ + + + + S E + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL 168
V + + R + + + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 169 PVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAG----AFAFHPTLEWLFVGDRRG 224
A RA+ + + L+ + +IK + + +++G G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 225 TLLAWDVSIERPSMIGIIQVGSQPITSVAWL 255
L A+D E G + + S+A +
Sbjct: 302 DLAAYDA--ETLEKKGQVDLPGNASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 7e-05
Identities = 27/284 (9%), Positives = 62/284 (21%), Gaps = 41/284 (14%)
Query: 24 PHEAAFHPNQALIAVAIGTY--IIEFDTLTGSRIASIDINSPVVR------MAYSPTSGH 75
P P + + +++ D +TG + ID+++P R A SP
Sbjct: 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT 95
Query: 76 AVVAILED-----------------------CTIRSCDFDTEQSFVLHSPEKKMESISVD 112
+ K+ + D
Sbjct: 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD 155
Query: 113 TEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLY 172
V +V + + + ++ +
Sbjct: 156 LHVMDPEA--GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213
Query: 173 VAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS 232
+ ++ T + + + A +P F +D+
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVF---YFSTAVNPAKTRAFGAYNVLES--FDL- 267
Query: 233 IERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276
E+ + I + + SV + G L +
Sbjct: 268 -EKNASIKRVPLPHSY-YSVNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 27/278 (9%), Positives = 64/278 (23%), Gaps = 26/278 (9%)
Query: 22 LQPHE-----AAFHPNQALIAVA-----IGTYIIEFDTLTGSRIASIDINSPVVRMAYSP 71
Q + P+++L+ + + Y + + S+ P++ +
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 72 TSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH 131
+ + I D SF + + I +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 132 RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH 191
G + + K RL V + ++ + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL---IVGMNNSQVQWFRLPLCEDD 183
Query: 192 YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVS-------------IERPSM 238
++ +K E G + +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276
+ P+ S+ + P + L T DG + W +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 4e-06
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 209 AFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG-SQPITSVAWLPMLRLLVTLCRD 267
F +W + L AW I Q S + S + +VT D
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGAS----IFQSKESSSVLSCDISVDDKYIVTGSGD 327
Query: 268 GSLQVWK 274
V++
Sbjct: 328 KKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 0.001
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 162 LACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGD 221
L D L+ A+ A + + +++ + +++ G
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL-----SCDISVDDKYIVTGS 325
Query: 222 RRGTLLAWDV 231
++V
Sbjct: 326 GDKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 164 CHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR 223
R ++ +D IR ++I A L+ + + + G
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV------RCIRFDNKRIVSGAYD 237
Query: 224 GTLLAWDV-------SIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVW 273
G + WD+ + + + S + + + +V+ D ++ +W
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 292
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 8e-05
Identities = 28/286 (9%), Positives = 70/286 (24%), Gaps = 34/286 (11%)
Query: 23 QPHEAAFHPNQALIAVAIGTY-----------IIEFDTLTGSRIASIDINSPVVRMAYSP 71
+ + IA A + + FD +T A I++ + +
Sbjct: 48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY 107
Query: 72 TSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH 131
++ + V + + V H+ T
Sbjct: 108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD 167
Query: 132 RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP---VLYVAYADGLIRAYNIHTY 188
+ V EG T + + + L G I ++ +
Sbjct: 168 GSL-AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226
Query: 189 AVHYTLQLDNTIKLLGAGAF--------AFHPTLEWLFVGDRRGTLLA--------WDVS 232
+ ++ + A + A+H L+ +++ + +
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286
Query: 233 IERPSMIGIIQVGSQPITSVAWLP--MLRLLVTLCRDGSLQVWKTR 276
+ + ++G + S+ L D +L +
Sbjct: 287 AKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKTLYIHDAE 331
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (94), Expect = 0.001
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236
G I + TY + L + +LFV R G + D+ ++ P
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
Query: 237 SMIGIIQVGSQP---ITSVAWLPMLRLL-VTLCRDGSLQVWKT 275
+ + I++GS+ TS + +
Sbjct: 96 TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 138
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.002
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 204 GAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 263
GA + + G + + V +I + + ++ W LV+
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVK-RPMKIIKALNAHKDGVNNLLWETP-STLVS 274
Query: 264 LCRDGSLQVWK 274
D ++ W
Sbjct: 275 SGADACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.6 bits (90), Expect = 0.002
Identities = 9/64 (14%), Positives = 24/64 (37%)
Query: 210 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 269
+ P L G +++ W+++ I I + + +V+ +D +
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 270 LQVW 273
++ W
Sbjct: 292 IKFW 295
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.003
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 151 IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210
I T + + +L AD ++ ++I T TLQ N + F
Sbjct: 210 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS-AVTCLQF 268
Query: 211 HPTLEWLFVGDRRGTLLAWDVSIERP--SMIGIIQVGSQ-PITSVAWLPMLRLLVTLCRD 267
+ D GT+ WD+ +++ + GS + + + R+
Sbjct: 269 NKNFVITSSDD--GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Query: 268 GS----LQVW 273
G+ L V
Sbjct: 327 GTEETKLLVL 336
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1630 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.94 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.88 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.84 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.83 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.82 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.74 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.72 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.65 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.47 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.38 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.28 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.17 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.12 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.03 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.99 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.93 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.8 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.5 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.47 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.34 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.34 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.33 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.15 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.08 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.98 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.88 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.59 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.4 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.4 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.91 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.52 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.9 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.89 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.88 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.21 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.42 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.22 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 85.92 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 83.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 80.74 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1e-30 Score=240.04 Aligned_cols=243 Identities=17% Similarity=0.186 Sum_probs=207.9
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--
Q ss_conf 999189999489999999989-90999988999589997179-99899999289998999998999299997899957--
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~-- 96 (1630)
...|+|++|+|++++|++|+. +.|++||..+++.+..+..| .+|++++|+|+ +.++++++.|+.+++|+......
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~ 133 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-SSEEEEEETTCCEEEEESSSSCSCC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECC-CEEEEEECCCCEEECCCCCCCCCCC
T ss_conf 898889999899999999978995556310210257997246533775676012-1144310133201013322221222
Q ss_pred --------------EEEECCCCCEEEEECCC----------------------EEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf --------------99976899737863398----------------------199999499999999742870899998
Q 000346 97 --------------FVLHSPEKKMESISVDT----------------------EVHLALTPLQPVVFFGFHRRMSVTVVG 140 (1630)
Q Consensus 97 --------------~i~fspdg~~vSgs~Dg----------------------ti~I~~spdg~~IaSgs~Dg~tI~IwD 140 (1630)
...............+. .......+....+++++.|+ .|++||
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~v~i~d 212 (340)
T d1tbga_ 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWD 212 (340)
T ss_dssp CEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT-EEEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCC-EEEEEE
T ss_conf 1110013542110111111111111112445432001232211111233101576300124421268760573-699999
Q ss_pred CCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC---CCCEEECCCCCEEECCCCCEE
Q ss_conf 13698446266048998949999908999999996797199998578729999943---885256475008982999799
Q 000346 141 TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEWL 217 (1630)
Q Consensus 141 i~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~---~~~V~isGv~sIafSPDg~~L 217 (1630)
+.++ .+...+.+|...|++++|+|++.+|++++.|+.|++||++.......+.. ...+. +++|+|++++|
T Consensus 213 ~~~~--~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l 285 (340)
T d1tbga_ 213 VREG--MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT-----SVSFSKSGRLL 285 (340)
T ss_dssp TTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE-----EEEECSSSCEE
T ss_pred CCCC--CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEE-----EEEECCCCCEE
T ss_conf 9999--4889995788985899997998999999699969997521221111111224457458-----99998999999
Q ss_pred EEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 999679919999888898304999520587847999908998999998799548999
Q 000346 218 FVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 218 aSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
++|+.||.|++||+.++++ +.++.+|...|++++|+|++.+|++++.||.|++||
T Consensus 286 ~~g~~dg~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 286 LAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCEEEEEECCCCCE--EEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 9997979899999999939--899848999789999908999999990699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-30 Score=237.14 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=207.1
Q ss_pred EEECCCCCCCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCCE---EEEE--CCC-CCEEEEEEECCCCCEEEEEECCC
Q ss_conf 55335789999991899994899999999899099998899958---9997--179-99899999289998999998999
Q 000346 11 LRHVGRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSR---IASI--DIN-SPVVRMAYSPTSGHAVVAILEDC 84 (1630)
Q Consensus 11 lq~vgrg~~kp~~V~sIaFSPdG~lLaSgs~GtI~IWDl~tg~~---i~tl--~~~-~~VtsIafSpd~g~lLvSgS~DG 84 (1630)
+...+|.. .|.|++|+|++++|++|++|.|+|||+.++.. +..+ ..| +.|++++|+|+ +++|++++.|+
T Consensus 45 ~~~~~H~~----~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d-g~~l~s~~~dg 119 (337)
T d1gxra_ 45 INTLNHGE----VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEAS 119 (337)
T ss_dssp EEEECCSS----CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSS
T ss_pred EEECCCCC----CEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCC-CCEEEEEECCC
T ss_conf 99879999----28999998999999999799889977367763311687640488996899998679-98898861233
Q ss_pred EEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEE
Q ss_conf 29999789995799976899737863398199999499999999742870899998136984462660489989499999
Q 000346 85 TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 85 tIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIaf 164 (1630)
.|++||+.......... ...+......+.+++++..+++++.++ .|.+|+..++ .+......|...+.+++|
T Consensus 120 ~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~~~~~~~~--~~~~~~~~~~~~v~~l~~ 191 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAE-----LTSSAPACYALAISPDSKVCFSCCSDG-NIAVWDLHNQ--TLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp EEEEEECCCC--EEEEE-----EECSSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTT--EEEEEECCCSSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf 21111111111111111-----111111111111111111111111111-1111111111--111111111111110123
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEEC
Q ss_conf 08999999996797199998578729999943885256475008982999799999679919999888898304999520
Q 000346 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV 244 (1630)
Q Consensus 165 SPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~g 244 (1630)
++++..+++++.|+.+++||+++++.+..+.+...|. +++|+|+++++++++.|+.+++||+.+.+ ......
T Consensus 192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~-----~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~ 263 (337)
T d1gxra_ 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-----SLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHL 263 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEE-----EEEECCCCCCCCEECCCCCCCCCCCCCCC---CCCCCC
T ss_conf 4443211223566553211111100000246666157-----99971530300000025642111111111---000012
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 587847999908998999998799548999332
Q 000346 245 GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 245 H~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
|...|+++.|+|++++|++++.||.|++||+..
T Consensus 264 ~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCCCEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 456541699989999999994899699998999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-30 Score=236.32 Aligned_cols=248 Identities=18% Similarity=0.174 Sum_probs=188.8
Q ss_pred CCCCCCCCCCEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECC------------------C-CCEEEEEEECCCCC
Q ss_conf 5789999991899994899999999899099998899958999717------------------9-99899999289998
Q 000346 15 GRGDHKPLQPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI------------------N-SPVVRMAYSPTSGH 75 (1630)
Q Consensus 15 grg~~kp~~V~sIaFSPdG~lLaSgs~GtI~IWDl~tg~~i~tl~~------------------~-~~VtsIafSpd~g~ 75 (1630)
+|.. .|+|++|+|+|++|++|+++.|++||+.+++.+..+.. + ..|++++|+|+ ++
T Consensus 60 ~H~~----~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~ 134 (388)
T d1erja_ 60 DHTS----VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GK 134 (388)
T ss_dssp ECSS----CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SS
T ss_pred CCCC----CEEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CC
T ss_conf 9999----689999999999999994994899981364057663166544324432111014677898899998899-98
Q ss_pred EEEEEECCCEEEEEECCCCCE------------EEEECCCCCE-EEEECCCEEEEEE----------------------C
Q ss_conf 999998999299997899957------------9997689973-7863398199999----------------------4
Q 000346 76 AVVAILEDCTIRSCDFDTEQS------------FVLHSPEKKM-ESISVDTEVHLAL----------------------T 120 (1630)
Q Consensus 76 lLvSgS~DGtIrIWDl~tgk~------------~i~fspdg~~-vSgs~Dgti~I~~----------------------s 120 (1630)
+|++++.|+.|++|+...++. ++.+++++.. +.++.++.+.+|. .
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01213444111121111111111111111111110111111111122210156541011111100001245442112368
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEE-------EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE--
Q ss_conf 999999997428708999981369844626-------60489989499999089999999967971999985787299--
Q 000346 121 PLQPVVFFGFHRRMSVTVVGTVEGGRAPTK-------IKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVH-- 191 (1630)
Q Consensus 121 pdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~-------il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i-- 191 (1630)
.++..+++++.|+ .|++|+..++. ... ...+|...|.+++|+|++.+|++++.|+.|++||+++....
T Consensus 215 ~~~~~l~~~~~d~-~i~i~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 291 (388)
T d1erja_ 215 GDGKYIAAGSLDR-AVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291 (388)
T ss_dssp TTCCEEEEEETTS-CEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCCCEEEEECCCC-EEEEEECCCCC--CCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 8787589973898-19996345573--00010244333457789878999979999999997899289875157764321
Q ss_pred ----------EEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEE------
Q ss_conf ----------99943-8852564750089829997999996799199998888983049995205878479999------
Q 000346 192 ----------YTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAW------ 254 (1630)
Q Consensus 192 ----------~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsf------ 254 (1630)
..... ...|. +++|+|++++|++|+.||.|++||+.++++ +.++.+|...|.++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~~ 364 (388)
T d1erja_ 292 SKTPNSGTCEVTYIGHKDFVL-----SVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSSL 364 (388)
T ss_dssp -------CEEEEEECCSSCEE-----EEEECGGGCEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCCCCCEEEECCCCCCEEE-----EEEECCCCCEEEEEECCCEEEEEECCCCCE--EEEEECCCCCEEEEEEECCCCC
T ss_conf 013444200110124553278-----999889999999996989799999999969--9999688997899998467425
Q ss_pred ECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 08998999998799548999332
Q 000346 255 LPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 255 SPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
+|++.+|+|++.||+|++|+++.
T Consensus 365 spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 365 GPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp CTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCCEEEEEECCCEEEEEEEEE
T ss_conf 89999999991899799976214
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-29 Score=227.83 Aligned_cols=265 Identities=15% Similarity=0.188 Sum_probs=217.4
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 9189999489999999989-90999988999589997179-998999992899989999989992999978999579997
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~f 100 (1630)
.|++++|+|++++|++|+. ++|++||+.+++.+.++..| ..|++++|+++ +.+++++..++.+..|+....+....+
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTM 97 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7689999389899999938992999989999799999578886777763011-110111111111011100111111110
Q ss_pred CCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 68997378633981999994999999997428708999981369844626604899894999990899999999679719
Q 000346 101 SPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLI 180 (1630)
Q Consensus 101 spdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtI 180 (1630)
. +.......+.+.+++..+++++.|+ .+++|+..++ .....+.+|...+.+++|++++.++++++.|+.|
T Consensus 98 ~-------~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 98 H-------GHDHNVSSVSIMPNGDHIVSASRDK-TIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp C-------CCSSCEEEEEECSSSSEEEEEETTS-EEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred C-------CCCCCCEEEECCCCCCEEEEECCCC-CEEEEECCCC--EEEEEECCCCCCCEEEECCCCCCEEEEEECCCEE
T ss_conf 0-------0000000000169985577652675-2357511443--0346871677763000016679999999279829
Q ss_pred EEEECCCCCEEEEEEC-CCCEEECCCCCEEECCC--------------------CCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 9998578729999943-88525647500898299--------------------97999996799199998888983049
Q 000346 181 RAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPT--------------------LEWLFVGDRRGTLLAWDVSIERPSMI 239 (1630)
Q Consensus 181 kIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPD--------------------g~~LaSGS~DGtIkIWDl~tgk~~ii 239 (1630)
++|+..+......+.. ...+. ++.|+|+ +.++++++.|+.|++||+.++++ +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~ 240 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVE-----CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--L 240 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEE-----EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE--E
T ss_pred EEEEECCCEEEEEEECCCCCCE-----EEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCE--E
T ss_conf 9975125403478824778733-----79986325641110345630343025886147516997899988899968--8
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99520587847999908998999998799548999332039999997543125776433461210002599621248972
Q 000346 240 GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRV 319 (1630)
Q Consensus 240 ~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~~~~pnk~~~~a~fFe~~~I~Sidi~~iLs~~gge~vy~l~ri 319 (1630)
..+.+|...|.++.|+|++++|++++.||.|++||+..... ...+ . .....+
T Consensus 241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~---------------~-------~h~~~V 292 (317)
T d1vyhc1 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC------MKTL---------------N-------AHEHFV 292 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC------CEEE---------------E-------CCSSCE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEEE---------------C-------CCCCCE
T ss_conf 99968899879999879999999997989499999999919------9999---------------2-------899988
Q ss_pred EEEEECCCCCCEEE
Q ss_conf 78875789991367
Q 000346 320 RALEVHPRLNLAVL 333 (1630)
Q Consensus 320 ~~v~~HP~~Nl~al 333 (1630)
+++.|+|..+.++.
T Consensus 293 ~~~~~s~~~~~l~s 306 (317)
T d1vyhc1 293 TSLDFHKTAPYVVT 306 (317)
T ss_dssp EEEEECSSSSCEEE
T ss_pred EEEEECCCCCEEEE
T ss_conf 99999499999999
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.4e-29 Score=226.15 Aligned_cols=240 Identities=11% Similarity=0.105 Sum_probs=206.1
Q ss_pred CCEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC
Q ss_conf 918999948999999998990999988999589997179-9989999928999899999899929999789995799976
Q 000346 23 QPHEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fs 101 (1630)
++.+++++|+|..|+.+..+.|.+|++.+......+.+| ..|++++|+|+ +++|++|+.|++|++||+.++.......
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~ 97 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTT 97 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred CEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEEEEECC-CCEEECCCCCCEEEEEEEECCCCCCCCC
T ss_conf 759999969989999996999999999999661797478888899999489-9967225567367466310111100001
Q ss_pred CCCCEEEEECCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCE-EEEEECCCE
Q ss_conf 89973786339819999949999999974287-0899998136984462660489989499999089999-999967971
Q 000346 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV-LYVAYADGL 179 (1630)
Q Consensus 102 pdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg-~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~l-LaSgS~DGt 179 (1630)
..++......+.+++++..+++++.+. ..+++|++..+ .....+.+|...|++++|+|++.+ +++++.|+.
T Consensus 98 -----~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~--~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~ 170 (311)
T d1nr0a1 98 -----IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170 (311)
T ss_dssp -----EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf -----343357543323331110001111221111111111111--1111111111111111112111012000112211
Q ss_pred EEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEE-------ECCCCCEEE
Q ss_conf 99998578729999943-8852564750089829997999996799199998888983049995-------205878479
Q 000346 180 IRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII-------QVGSQPITS 251 (1630)
Q Consensus 180 IkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL-------~gH~~~Vss 251 (1630)
|++||+++++....+.. ...|+ ++.|+|+++++++++.|+.+++||..++.. +..+ .+|...|++
T Consensus 171 i~i~d~~~~~~~~~~~~~~~~i~-----~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~h~~~V~~ 243 (311)
T d1nr0a1 171 VAIFEGPPFKFKSTFGEHTKFVH-----SVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFG 243 (311)
T ss_dssp EEEEETTTBEEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111-----123476422121111111110001244641--12221111111002465321
Q ss_pred EEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 99908998999998799548999332
Q 000346 252 VAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 252 IsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
++|+|++++|++++.||+|++||+++
T Consensus 244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 244 LTWSPDGTKIASASADKTIKIWNVAT 269 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCCCCCEEEEEECCCEEEEEECCC
T ss_conf 02478899999993799699999999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=4e-28 Score=220.70 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=198.6
Q ss_pred CCCEEEEECCCCCEEEEEEC-CEEEEEECCCCC--EEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 99189999489999999989-909999889995--89997179-998999992899989999989992999978999579
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS--RIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 22 ~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~--~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~ 97 (1630)
..|+|++|+|++.+|++++. +.|++||..+++ .+..+.+| ++|++++|+|+ +++|++++.|++|++||+.++...
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCC-CCEEEEEECCCEEEEEEECCCCCC
T ss_conf 8838999989999999994889899998889978999995588998889999799-999999979993999862033211
Q ss_pred EEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCC--CCEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 9976899737863398199999499999999742870899998136984--46266048998949999908999999996
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGR--APTKIKTDLKKPIVNLACHPRLPVLYVAY 175 (1630)
Q Consensus 98 i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~--~~i~il~~H~~~ItsIafSPdg~lLaSgS 175 (1630)
...... ++.....++.++|+++.+++++.++ .+++|++..... ........|...|.+++|+|++.+|++++
T Consensus 87 ~~~~~~-----~~~~~v~~i~~~p~~~~l~~~s~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 87 PTLVIL-----RINRAARCVRWAPNEKKFAVGSGSR-VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp EEEECC-----CCSSCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCC-----CCCCCCCCCCCCCCCCCCEEECCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 001223-----2211000111111121100000257-6302544203343311100101112221111111111100013
Q ss_pred CCCEEEEEECCCC------------------CEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 7971999985787------------------29999943-8852564750089829997999996799199998888983
Q 000346 176 ADGLIRAYNIHTY------------------AVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP 236 (1630)
Q Consensus 176 ~DGtIkIWDi~t~------------------~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~ 236 (1630)
.|+++++||.... ........ ...+. +++|+|+++++++++.|+.|++||+.++..
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH-----GVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE-----EEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE-----EEEEECCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 476799984015764310012211111111011244047667478-----987512332100001478605886410121
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 04999520587847999908998999998799548999332
Q 000346 237 SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 237 ~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
+..+..|..+|.+++|+|++.++++| .|+.+++|....
T Consensus 236 --~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 236 --VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 273 (371)
T ss_dssp --EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred --EEEEECCCCCCEEEEECCCCCEEEEE-CCCCEEEEEEEC
T ss_conf --00000146652036546999799998-199267877608
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=7.3e-28 Score=218.75 Aligned_cols=241 Identities=14% Similarity=0.145 Sum_probs=162.2
Q ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEEC-CC-CCEEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 3578999999189999489999999989-909999889995899971-79-99899999289998999998999299997
Q 000346 14 VGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-IN-SPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 14 vgrg~~kp~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~-~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWD 90 (1630)
.||.. .|++++|+|++++|++|+. ++|++||+.+++....+. +| ..|++++|+|+ +.+ ++++.|+.+++|+
T Consensus 9 ~GH~~----~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 9 YGHNK----AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp CCCSS----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCE-EEEETTTEEEEEC
T ss_pred CCCCC----CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECC-CEE-ECCCCEEEEEEEC
T ss_conf 88887----82899997999999999089929999999996889983788774899884033-112-1023102688731
Q ss_pred CCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCE
Q ss_conf 89995799976899737863398199999499999999742870899998136984462660489989499999089999
Q 000346 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 91 l~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~l 170 (1630)
...... ................+.+.+++..++.++. + .+.+|+.... ..... ...+.+++|+|++.+
T Consensus 83 ~~~~~~----~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-~-~i~~~~~~~~----~~~~~--~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 83 AGGSGV----DSSKAVANKLSSQPLGLAVSADGDIAVAACY-K-HIAIYSHGKL----TEVPI--SYNSSCVALSNDKQF 150 (299)
T ss_dssp SSSSSS----CTTSCCEEECSSCEEEEEECTTSSCEEEEES-S-EEEEEETTEE----EEEEC--SSCEEEEEECTTSCE
T ss_pred CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCC----CCCCC--CCCCCCCCCCCCCCC
T ss_conf 677620----1110001111344321001122111112222-2-2211111111----11011--112332211111111
Q ss_pred EEEEECCCEEEEEECCCCCEEE--EEECCCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCC-EEEEEEECCCC
Q ss_conf 9999679719999857872999--99438852564750089829997999996799199998888983-04999520587
Q 000346 171 LYVAYADGLIRAYNIHTYAVHY--TLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERP-SMIGIIQVGSQ 247 (1630)
Q Consensus 171 LaSgS~DGtIkIWDi~t~~~i~--tL~~~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~-~ii~tL~gH~~ 247 (1630)
+++++.|+.|++||+++..... ...+...|. +++|+|++.++++++.|+.+++||+.++.. .....+.+|..
T Consensus 151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~ 225 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT-----SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225 (299)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEEECSSCEE-----EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111111111111111111111111111111111-----111111111111111111111111111111111111111111
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 847999908998999998799548999332
Q 000346 248 PITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 248 ~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
.|++++|+|++.+|++++.||.|++||+..
T Consensus 226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEEEECCC
T ss_conf 111112466645138882899799998999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.9e-25 Score=199.42 Aligned_cols=232 Identities=11% Similarity=0.125 Sum_probs=176.5
Q ss_pred CEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC
Q ss_conf 189999489999999989-90999988999589997179-9989999928999899999899929999789995799976
Q 000346 24 PHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 24 V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fs 101 (1630)
+.|++| ++++|++|+. ++|++||+.+++++.++.+| ++|++++|+++ ..|++++.|+.|++|+...........
T Consensus 16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~~~~ 91 (355)
T d1nexb2 16 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHVFE 91 (355)
T ss_dssp EEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 999998--8999999918990999989999399999789998899998699--999999645244321111111111110
Q ss_pred CCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCC---------------------CEEEECCCCCCEE
Q ss_conf 8997378633981999994999999997428708999981369844---------------------6266048998949
Q 000346 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA---------------------PTKIKTDLKKPIV 160 (1630)
Q Consensus 102 pdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~---------------------~i~il~~H~~~It 160 (1630)
...... ........+++..+++++.|+ .|++|++...... .......|...+.
T Consensus 92 ~~~~~~-----~~~~~~~~~~~~~~~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (355)
T d1nexb2 92 GHNSTV-----RCLDIVEYKNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165 (355)
T ss_dssp CCSSCE-----EEEEEEEETTEEEEEEEETTS-EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE
T ss_pred CCCCCC-----CCCCCCCCCCCCEEEEECCCC-CEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCC
T ss_conf 011111-----111111112322045543888-68999856773001246520001000001123401210110022210
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 999908999999996797199998578729999943-8852564750089829997999996799199998888983049
Q 000346 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMI 239 (1630)
Q Consensus 161 sIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii 239 (1630)
.+.+++.+++++..|+.+++||+++++.+..... ...+. ++.|+|++.++++++.|+.|++||..++.. +
T Consensus 166 --~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~ 236 (355)
T d1nexb2 166 --TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-----STIYDHERKRCISASMDTTIRIWDLENGEL--M 236 (355)
T ss_dssp --EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-----EEEEETTTTEEEEEETTSCEEEEETTTCCE--E
T ss_pred --CCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCC-----CCCCCCCCEEEECCCCCCEEEEEECCCCCC--C
T ss_conf --0002563344211442044430131100011000123321-----111112100210124563687630122111--1
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf 9952058784799990899899999879954899933
Q 000346 240 GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 240 ~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
..+.+|...|.++.|++ +++++++.||.|++||++
T Consensus 237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~ 271 (355)
T d1nexb2 237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN 271 (355)
T ss_dssp EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCC
T ss_conf 11111111111112321--003332011111111111
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7e-25 Score=196.56 Aligned_cols=233 Identities=14% Similarity=0.127 Sum_probs=117.2
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCC--CEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 9189999489999999989-90999988999--589997179-9989999928999899999899929999789995799
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTG--SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg--~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i 98 (1630)
.|.+++|+|++++|++++. +.|++||+... +....+..+ ..+..+.|+++ +.++++++.|+.|++|++.++++..
T Consensus 99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 689999867998898861233211111111111111111111111111111111-1111111111111111111111111
Q ss_pred EECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 97689973786339819999949999999974287089999813698446266048998949999908999999996797
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG 178 (1630)
... +..+....+.+++++..+++++.|+ .+++||+.++ .....+ .|...|++++|+|++..+++++.|+
T Consensus 178 ~~~-------~~~~~v~~l~~s~~~~~~~~~~~d~-~v~i~d~~~~--~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~ 246 (337)
T d1gxra_ 178 QFQ-------GHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREG--RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EEC-------CCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTT--EEEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-------CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--EEECCC-CCCCCEEEEEECCCCCCCCEECCCC
T ss_conf 111-------1111111012344432112235665-5321111110--000024-6666157999715303000000256
Q ss_pred EEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf 19999857872999994388525647500898299979999967991999988889830499952058784799990899
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPML 258 (1630)
Q Consensus 179 tIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG 258 (1630)
.+++||+++........+...|+ +++|+|++++|++++.|+.|++||..+++. +..+ .|...|++++|+|++
T Consensus 247 ~i~i~d~~~~~~~~~~~~~~~i~-----~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~s~d~ 318 (337)
T d1gxra_ 247 NVEVLHVNKPDKYQLHLHESCVL-----SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQS-KESSSVLSCDISVDD 318 (337)
T ss_dssp CEEEEETTSSCEEEECCCSSCEE-----EEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEE-ECSSCEEEEEECTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----EEEECCCCCEEEEEECCCEEEEEECCCCCE--EEEC-CCCCCEEEEEEECCC
T ss_conf 42111111111000012456541-----699989999999994899699998999979--9992-699987999992799
Q ss_pred CEEEEEECCCCEEEEEE
Q ss_conf 89999987995489993
Q 000346 259 RLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 259 ~lLaSgS~DGtIrIWDi 275 (1630)
++|++++.||+|+|||+
T Consensus 319 ~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 319 KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred CEEEEEECCCEEEEEEE
T ss_conf 99999908996999977
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.4e-25 Score=196.37 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=170.5
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 9189999489999999989-90999988999589997179-998999992899989999989992999978999579997
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH 100 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~f 100 (1630)
.|.+ +++++|++|++|+. +.|++||+.+++++.++.+| ..|++++|+++ ++++++.|+.+++|+..........
T Consensus 18 ~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~~~ 93 (342)
T d2ovrb2 18 HVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTL 93 (342)
T ss_dssp SCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC---CCCCCEECCCCCCCCCCCCCCEECC
T ss_conf 5099-99978999999918990999989999799999488999899994798---6321000001111111100000001
Q ss_pred ----------CCCCCE-EEEECCCEEEEEECC--------------------CCCEEEEEECCCCEEEEEECCCCCCCCE
Q ss_conf ----------689973-786339819999949--------------------9999999742870899998136984462
Q 000346 101 ----------SPEKKM-ESISVDTEVHLALTP--------------------LQPVVFFGFHRRMSVTVVGTVEGGRAPT 149 (1630)
Q Consensus 101 ----------spdg~~-vSgs~Dgti~I~~sp--------------------dg~~IaSgs~Dg~tI~IwDi~sg~~~~i 149 (1630)
...... ..+..|..+.++... ....++.++.++ .+++|+.... .+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~d~~~~--~~~ 170 (342)
T d2ovrb2 94 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF-MVKVWDPETE--TCL 170 (342)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS-CEEEEEGGGT--EEE
T ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCC-EEEEEECCCC--EEE
T ss_conf 2333047652024652212344403787403556300111001111000001333024335898-6999525234--366
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEE
Q ss_conf 66048998949999908999999996797199998578729999943-88525647500898299979999967991999
Q 000346 150 KIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLA 228 (1630)
Q Consensus 150 ~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkI 228 (1630)
..+.+|...+..+.+ ++..+++++.|+.|++||++..+++..+.. ...+. ++.+++ +++++++.|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~-----~~~~~~--~~l~s~s~d~~i~i 241 (342)
T d2ovrb2 171 HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-----GMELKD--NILVSGNADSTVKI 241 (342)
T ss_dssp EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-----EEEEET--TEEEEEETTSCEEE
T ss_pred EEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE-----EEECCC--CEEEEECCCCEEEE
T ss_conf 787275444210068--999999995899399952556536567416653205-----770689--99999748988999
Q ss_pred EECCCCCCEEEEEEEC---CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 9888898304999520---587847999908998999998799548999332
Q 000346 229 WDVSIERPSMIGIIQV---GSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 229 WDl~tgk~~ii~tL~g---H~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
||....+. ...+.. |...+.++.++ +.++++++.||+|++||+++
T Consensus 242 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 242 WDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp EETTTCCE--EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCC--CCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCC
T ss_conf 86554422--11122100011010000137--98449990899899999999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=7.2e-25 Score=196.44 Aligned_cols=204 Identities=9% Similarity=0.048 Sum_probs=169.3
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEC
Q ss_conf 99899999289998999998999299997899957999768997378633981999994999999997428708999981
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGT 141 (1630)
Q Consensus 62 ~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi 141 (1630)
.+|++++|+|+ +.+|++++.|+.|++|+..+++...... ..++.+.+..+.++|++.++++++.|+ .|++||+
T Consensus 8 ~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~-----l~gH~~~V~~l~fsp~~~~l~s~s~D~-~i~vWd~ 80 (371)
T d1k8kc_ 8 EPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHE-----LKEHNGQVTGVDWAPDSNRIVTCGTDR-NAYVWTL 80 (371)
T ss_dssp SCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEE-----EECCSSCEEEEEEETTTTEEEEEETTS-CEEEEEE
T ss_pred CCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEEE-----ECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEEE
T ss_conf 88389999899-9999999488989999888997899999-----558899888999979999999997999-3999862
Q ss_pred CCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE----C-CCCEEECCCCCEEECCCCCE
Q ss_conf 369844626604899894999990899999999679719999857872999994----3-88525647500898299979
Q 000346 142 VEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQ----L-DNTIKLLGAGAFAFHPTLEW 216 (1630)
Q Consensus 142 ~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~----~-~~~V~isGv~sIafSPDg~~ 216 (1630)
..+...+...+.+|...|.+++|+|+++.|++++.|+++++|++.......... . ...|. +++|+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~-----~v~~~p~~~~ 155 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL-----SLDWHPNSVL 155 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE-----EEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCC
T ss_conf 03321100122322110001111111211000002576302544203343311100101112221-----1111111111
Q ss_pred EEEEECCCEEEEEECCCCC----------------CEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 9999679919999888898----------------304999520587847999908998999998799548999332
Q 000346 217 LFVGDRRGTLLAWDVSIER----------------PSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 217 LaSGS~DGtIkIWDl~tgk----------------~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
|++|+.|+++++|+..... ...+.....|...|.+++|+|+++++++++.|+.|++||+..
T Consensus 156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~ 232 (371)
T d1k8kc_ 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 232 (371)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEC
T ss_conf 00013476799984015764310012211111111011244047667478987512332100001478605886410
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.5e-24 Score=188.11 Aligned_cols=235 Identities=17% Similarity=0.182 Sum_probs=202.7
Q ss_pred CCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 99189999489999999989-90999988999589997179-99899999289998999998999299997899957999
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 22 ~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~ 99 (1630)
..|.+++|+|++.+++++.. +.+.+|+.........+..+ ..+.++.|+++ ++.+++++.|+.+++|++.+++....
T Consensus 60 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~ 138 (317)
T d1vyhc1 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKT 138 (317)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CCEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 86777763011110111111111011100111111110000000000001699-85577652675235751144303468
Q ss_pred ECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCC-----------
Q ss_conf 768997378633981999994999999997428708999981369844626604899894999990899-----------
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL----------- 168 (1630)
Q Consensus 100 fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg----------- 168 (1630)
+. +.......+.+++++..+++++.|+ .|++|+...+ .....+.+|...+.++.|+|+.
T Consensus 139 ~~-------~~~~~~~~~~~~~~~~~l~~~~~d~-~v~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 208 (317)
T d1vyhc1 139 FT-------GHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATK--ECKAELREHRHVVECISWAPESSYSSISEATGS 208 (317)
T ss_dssp EE-------CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTC--CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred EC-------CCCCCCEEEECCCCCCEEEEEECCC-EEEEEEECCC--EEEEEEECCCCCCEEEEEEECCCCCEEECCCCC
T ss_conf 71-------6777630000166799999992798-2999751254--034788247787337998632564111034563
Q ss_pred ---------CEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEE
Q ss_conf ---------9999996797199998578729999943-885256475008982999799999679919999888898304
Q 000346 169 ---------PVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM 238 (1630)
Q Consensus 169 ---------~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~i 238 (1630)
..+++++.|+.|++||.++++++.++.+ ...|. +++|+|++++|++++.||.|++||+.++++
T Consensus 209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 281 (317)
T d1vyhc1 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR-----GVLFHSGGKFILSCADDKTLRVWDYKNKRC-- 281 (317)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-----EEEECSSSSCEEEEETTTEEEEECCTTSCC--
T ss_pred EEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-----EEEECCCCCEEEEEECCCEEEEEECCCCCE--
T ss_conf 0343025886147516997899988899968899968899879-----999879999999997989499999999919--
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 999520587847999908998999998799548999
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 239 i~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
+.++.+|...|++++|+|++++|++++.||+|++||
T Consensus 282 ~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 999928999889999949999999992899499829
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.3e-24 Score=190.66 Aligned_cols=244 Identities=11% Similarity=0.107 Sum_probs=192.1
Q ss_pred CCEEEEECCCCCEEEEEECCE--EEEEECCCC--CEEEEEC-CC-CCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCC
Q ss_conf 918999948999999998990--999988999--5899971-79-99899999289-99899999899929999789995
Q 000346 23 QPHEAAFHPNQALIAVAIGTY--IIEFDTLTG--SRIASID-IN-SPVVRMAYSPT-SGHAVVAILEDCTIRSCDFDTEQ 95 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~Gt--I~IWDl~tg--~~i~tl~-~~-~~VtsIafSpd-~g~lLvSgS~DGtIrIWDl~tgk 95 (1630)
.+.+++|+|+++.+++++.+. |+.|+.... ..+..+. |+ ..|++++|+|+ ++.+|++|+.||+|++||+..++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred E--EEEECCCCCEEEEECCCEEEEEECCCCCEEEEEEC--CCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCE-
Q ss_conf 7--99976899737863398199999499999999742--870899998136984462660489989499999089999-
Q 000346 96 S--FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFH--RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV- 170 (1630)
Q Consensus 96 ~--~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~--Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~l- 170 (1630)
. ....... ............+.+++++..+++++. +. .+.+|++.++ .+...+.+|...|.+++|+|++..
T Consensus 99 ~~~~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~-~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 174 (325)
T d1pgua1 99 ESNSVEVNVK-SEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSG--NSLGEVSGHSQRINACHLKQSRPMR 174 (325)
T ss_dssp GGTEEEEEEE-EEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTC--CEEEECCSCSSCEEEEEECSSSSCE
T ss_pred CEEEEECCCC-CCCCCCCCCEEEEEECCCCCCCCEEECCCCC-EEEEEEECCC--CCCEEEEECCCCCCCCCCCCCCCCE
T ss_conf 2156510025-4113656737799989998822010012440-4788850233--1100120012343211112343206
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEC----CCCEEECCCCCEEECCC-CCEEEEEECCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 99996797199998578729999943----88525647500898299-97999996799199998888983049995205
Q 000346 171 LYVAYADGLIRAYNIHTYAVHYTLQL----DNTIKLLGAGAFAFHPT-LEWLFVGDRRGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 171 LaSgS~DGtIkIWDi~t~~~i~tL~~----~~~V~isGv~sIafSPD-g~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH 245 (1630)
+++++.|+.+++||....+....+.. ...|. +++|+|+ +.++++++.|+.|++||+++++. +..+.+|
T Consensus 175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~-----~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~--~~~l~~~ 247 (325)
T d1pgua1 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR-----DVEFSPDSGEFVITVGSDRKISCFDGKSGEF--LKYIEDD 247 (325)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE-----EEEECSTTCCEEEEEETTCCEEEEETTTCCE--EEECCBT
T ss_pred EEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCE-----EEEECCCCCEECCCCCCCCCEEEEEECCCCC--CCCCCCC
T ss_conf 88862111221111221100000000157777527-----7630345310000112332101343001222--1111111
Q ss_pred CCCEEEEEEE---CCCCEEEEEECCCCEEEEEEEE
Q ss_conf 8784799990---8998999998799548999332
Q 000346 246 SQPITSVAWL---PMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 246 ~~~VssIsfS---PdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
...+.++.|+ +++.+|++++.|+.|++||+..
T Consensus 248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~ 282 (325)
T d1pgua1 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282 (325)
T ss_dssp TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 11111100000036899999995899399999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2e-23 Score=185.69 Aligned_cols=232 Identities=14% Similarity=0.156 Sum_probs=178.3
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 999189999489999999989-90999988999589997179-9989999928999899999899929999789995799
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i 98 (1630)
...|+|++| ++++|++|+. +.|++||+.+++++.++.+| +.|++++| + +++|++++.|+.|++|++..+....
T Consensus 15 ~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~-~~~l~s~s~D~~i~~~~~~~~~~~~ 89 (293)
T d1p22a2 15 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLN 89 (293)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--C-CCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 998899987--6999999928993999999999199999267787763423--6-3002100111011000002464100
Q ss_pred EECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCC-CCCEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 97689973786339819999949999999974287089999813698-44626604899894999990899999999679
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 99 ~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~-~~~i~il~~H~~~ItsIafSPdg~lLaSgS~D 177 (1630)
....... ...........++++..++ .+.+|+..... ......+..|...+..+.+.+ ..+++++.|
T Consensus 90 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d 157 (293)
T d1p22a2 90 TLIHHCE---------AVLHLRFNNGMMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD 157 (293)
T ss_dssp EECCCCS---------CEEEEECCTTEEEEEETTS-CEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETT
T ss_pred CCCCCCC---------CCCCCCCCCCCEEECCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCC
T ss_conf 1111110---------0001111110000013566-306861344544421210001135431100000--220110699
Q ss_pred CEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf 7199998578729999943-885256475008982999799999679919999888898304999520587847999908
Q 000346 178 GLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLP 256 (1630)
Q Consensus 178 GtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSP 256 (1630)
+.+++||.++.+.+..+.+ ...+. .+.++ +.++++++.|+.|++||+++... +....+|...+.. +.+
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~v~-----~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~--~~~ 226 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGHKRGIA-----CLQYR--DRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRC--IRF 226 (293)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEE-----EEEEE--TTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEE--EEC
T ss_pred CCEEEECCCCCCEEEEECCCCCCCC-----CCCCC--CCEEEEECCCCEEEEEECCCCEE--EEEECCCCEEEEE--CCC
T ss_conf 8604100788838899715544532-----21689--87588765899899986655614--6652143100000--145
Q ss_pred CCCEEEEEECCCCEEEEEEEEECC
Q ss_conf 998999998799548999332039
Q 000346 257 MLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 257 dG~lLaSgS~DGtIrIWDi~~~~~ 280 (1630)
++.+|++++.||.|++|++.....
T Consensus 227 ~~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 227 DNKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred CCEEEEEECCCCEEEEEECCCCCC
T ss_conf 410799986799799998888864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.5e-23 Score=186.55 Aligned_cols=238 Identities=12% Similarity=0.099 Sum_probs=181.6
Q ss_pred CCCEEEEECC--CCCEEEEEEC-CEEEEEECCCCCE--------EEEEC-CCCCEEEEEEECCCCCEEEEEEC--CCEEE
Q ss_conf 9918999948--9999999989-9099998899958--------99971-79998999992899989999989--99299
Q 000346 22 LQPHEAAFHP--NQALIAVAIG-TYIIEFDTLTGSR--------IASID-INSPVVRMAYSPTSGHAVVAILE--DCTIR 87 (1630)
Q Consensus 22 ~~V~sIaFSP--dG~lLaSgs~-GtI~IWDl~tg~~--------i~tl~-~~~~VtsIafSpd~g~lLvSgS~--DGtIr 87 (1630)
..|++++|+| ++.+|++|+. ++|++||+..++. ...+. +.++|.+++|+++ +..+++++. ++.++
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~~~~~~~~ 142 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDNFGV 142 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSCSEE
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCC-CCCCCEEECCCCCEEE
T ss_conf 988999981179997999994899779854058862156510025411365673779998999-8822010012440478
Q ss_pred EEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCE-EEEEECCCCEEEEEECCCCCC-CCEEEECCCCCCEEEEEEC
Q ss_conf 99789995799976899737863398199999499999-999742870899998136984-4626604899894999990
Q 000346 88 SCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPV-VFFGFHRRMSVTVVGTVEGGR-APTKIKTDLKKPIVNLACH 165 (1630)
Q Consensus 88 IWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~-IaSgs~Dg~tI~IwDi~sg~~-~~i~il~~H~~~ItsIafS 165 (1630)
+|+.+++++...+. ++......+.++++++. +++++.|+ .+++|+...... ........|...|.+++|+
T Consensus 143 ~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~ 214 (325)
T d1pgua1 143 FISWDSGNSLGEVS-------GHSQRINACHLKQSRPMRSMTVGDDG-SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 214 (325)
T ss_dssp EEETTTCCEEEECC-------SCSSCEEEEEECSSSSCEEEEEETTT-EEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred EEEECCCCCCEEEE-------ECCCCCCCCCCCCCCCCEEEEEECCC-CCCCCCCCCCCCCEECCCCCCCCCCCEEEEEC
T ss_conf 88502331100120-------01234321111234320688862111-22111122110000000015777752776303
Q ss_pred CC-CCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEEC---CCCCEEEEEECCCEEEEEECCCCCCEEEE
Q ss_conf 89-99999996797199998578729999943-885256475008982---99979999967991999988889830499
Q 000346 166 PR-LPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFH---PTLEWLFVGDRRGTLLAWDVSIERPSMIG 240 (1630)
Q Consensus 166 Pd-g~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafS---PDg~~LaSGS~DGtIkIWDl~tgk~~ii~ 240 (1630)
|+ +.++++++.|+.|++||+++++++.++.+ ...+. .+.|+ |++.+|++++.|+.|++||+.++++ +.
T Consensus 215 pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~-----~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~--~~ 287 (325)
T d1pgua1 215 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-----GGIFALSWLDSQKFATVGADATIRVWDVTTSKC--VQ 287 (325)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC-----SCEEEEEESSSSEEEEEETTSEEEEEETTTTEE--EE
T ss_pred CCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-----CCEEEEECCCCCEEEEEECCCEEEEEECCCCCE--EE
T ss_conf 45310000112332101343001222111111111111-----100000036899999995899399999999978--89
Q ss_pred EEECCCCC--EEEEEEECC-CCEEEEEECCCCEEEEEE
Q ss_conf 95205878--479999089-989999987995489993
Q 000346 241 IIQVGSQP--ITSVAWLPM-LRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 241 tL~gH~~~--VssIsfSPd-G~lLaSgS~DGtIrIWDi 275 (1630)
.+..|... +..+.+.+. ..++++++.||+|++||+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 99954874067699999889999999979999999979
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.6e-22 Score=177.45 Aligned_cols=211 Identities=16% Similarity=0.124 Sum_probs=147.0
Q ss_pred CCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 9589997179-998999992899989999989992999978999579997689973786339819999949999999974
Q 000346 52 GSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGF 130 (1630)
Q Consensus 52 g~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs 130 (1630)
.+..+++++| ++|++++|+|+ +++|++|+.||+|++||+.+++....+. .+......+.+++++..+++++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~ 116 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP-------LRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEE-------CSCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEEE-------CCCCCEEEEEEECCCEEEEEEC
T ss_conf 0652798887898889999899-9999999789955563102102579972-------4653377567601211443101
Q ss_pred CCCCEEEEEECCCCCC-------------------------------------------CCEEEECCCCCCEEEEEECCC
Q ss_conf 2870899998136984-------------------------------------------462660489989499999089
Q 000346 131 HRRMSVTVVGTVEGGR-------------------------------------------APTKIKTDLKKPIVNLACHPR 167 (1630)
Q Consensus 131 ~Dg~tI~IwDi~sg~~-------------------------------------------~~i~il~~H~~~ItsIafSPd 167 (1630)
.|+ .+.+|+...... ........+...+....+.+.
T Consensus 117 ~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (340)
T d1tbga_ 117 LDN-ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp TTC-CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred CCC-EEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 332-0101332222122211100135421101111111111111124454320012322111112331015763001244
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf 99999996797199998578729999943-88525647500898299979999967991999988889830499952058
Q 000346 168 LPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS 246 (1630)
Q Consensus 168 g~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~ 246 (1630)
..++++++.|+.|++||++++.++.++.. ...|+ +++|+|+++++++++.|+.+++|++.............+.
T Consensus 196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-----~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~ 270 (340)
T d1tbga_ 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-----AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE-----EEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 21268760573699999999948899957889858-----9999799899999969996999752122111111122445
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf 784799990899899999879954899933
Q 000346 247 QPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 247 ~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
..|.++.|+|++.+|++++.||.|++||+.
T Consensus 271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp SCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 745899998999999999797989999999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.5e-22 Score=179.27 Aligned_cols=233 Identities=15% Similarity=0.150 Sum_probs=188.0
Q ss_pred EEEEEC-CEEEEEECCCCCE-----EEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCE---
Q ss_conf 999989-9099998899958-----9997179998999992899989999989992999978999579997689973---
Q 000346 36 IAVAIG-TYIIEFDTLTGSR-----IASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKM--- 106 (1630)
Q Consensus 36 LaSgs~-GtI~IWDl~tg~~-----i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~--- 106 (1630)
.+.... +...+|+....+. ...+.|.+.|++++|+|+ |++|++|+ |+.|++||+.+++....+......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred CCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCC-CCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 2246889708986887776205410760799996899999999-99999994-994899981364057663166544324
Q ss_pred --------EEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf --------786339819999949999999974287089999813698446266048998949999908999999996797
Q 000346 107 --------ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 107 --------vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG 178 (1630)
...+......+.+++++.++++++.|+ .|++|+...+ .......+|...|.++.+++++..+++++.++
T Consensus 109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg-~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 185 (388)
T d1erja_ 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR-LIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185 (388)
T ss_dssp ----------CCCCBEEEEEECTTSSEEEEEETTS-CEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 43211101467789889999889998012134441-1112111111--11111111111111101111111111222101
Q ss_pred EEEEEECCCCCEEEEEECCCCEEECCCCCEEECC-CCCEEEEEECCCEEEEEECCCCCCEEEEE-------EECCCCCEE
Q ss_conf 1999985787299999438852564750089829-99799999679919999888898304999-------520587847
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPSMIGI-------IQVGSQPIT 250 (1630)
Q Consensus 179 tIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSP-Dg~~LaSGS~DGtIkIWDl~tgk~~ii~t-------L~gH~~~Vs 250 (1630)
.+++||.++.............. ++.+++ ++.++++++.|+.+++|+..++.. ... ..+|...|+
T Consensus 186 ~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~ 258 (388)
T d1erja_ 186 TVRIWDLRTGQCSLTLSIEDGVT-----TVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVY 258 (388)
T ss_dssp EEEEEETTTTEEEEEEECSSCEE-----EEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEE
T ss_pred EEEEEECCCCCCCCCCCCCCCCC-----CCCCCCCCCCEEEEECCCCEEEEEECCCCCC--CEEECCCCCCCCCCCCCEE
T ss_conf 56541011111100001245442-----1123688787589973898199963455730--0010244333457789878
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEEEEECC
Q ss_conf 999908998999998799548999332039
Q 000346 251 SVAWLPMLRLLVTLCRDGSLQVWKTRVIIN 280 (1630)
Q Consensus 251 sIsfSPdG~lLaSgS~DGtIrIWDi~~~~~ 280 (1630)
++.|+|++.+|++++.|+.|++|+++....
T Consensus 259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 288 (388)
T d1erja_ 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288 (388)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 999979999999997899289875157764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=8.5e-23 Score=181.03 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=195.8
Q ss_pred CCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEE--EEECCC-CCEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCC
Q ss_conf 99189999489999999989-90999988999589--997179-998999992899989999989--9929999789995
Q 000346 22 LQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRI--ASIDIN-SPVVRMAYSPTSGHAVVAILE--DCTIRSCDFDTEQ 95 (1630)
Q Consensus 22 ~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i--~tl~~~-~~VtsIafSpd~g~lLvSgS~--DGtIrIWDl~tgk 95 (1630)
..|.|++|+|+|++|++|+. +.|++||+.++... ..+..| .+|.+++|+++ ++++++++. +..+++|++++++
T Consensus 59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~~~~~~~~~v~~~~~~~ 137 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFDTGT 137 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETTTCC
T ss_pred CCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8889999948999672255673674663101111000013433575433233311-100011112211111111111111
Q ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCC-EEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 79997689973786339819999949999-99997428708999981369844626604899894999990899999999
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQP-VVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA 174 (1630)
Q Consensus 96 ~~i~fspdg~~vSgs~Dgti~I~~spdg~-~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSg 174 (1630)
.... ..++.+....+.++++++ .+++++.|+ .|++||..++ .+......|...|+++.|+|++++++++
T Consensus 138 ~~~~-------l~~h~~~v~~v~~~~~~~~~l~sgs~d~-~i~i~d~~~~--~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 138 SNGN-------LTGQARAMNSVDFKPSRPFRIISGSDDN-TVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp BCBC-------CCCCSSCEEEEEECSSSSCEEEEEETTS-CEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCC-------CCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111-------1111111111111211101200011221-1111111111--1111111111111112347642212111
Q ss_pred ECCCEEEEEECCCCCEEEEEEC--------CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf 6797199998578729999943--------88525647500898299979999967991999988889830499952058
Q 000346 175 YADGLIRAYNIHTYAVHYTLQL--------DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGS 246 (1630)
Q Consensus 175 S~DGtIkIWDi~t~~~i~tL~~--------~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~ 246 (1630)
+.|+.+++||..++.....+.. ...|. +++|+|++++|++|+.|+.|++||++++++ +.++..|.
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~-----~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~--~~~l~~~~ 280 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF-----GLTWSPDGTKIASASADKTIKIWNVATLKV--EKTIPVGT 280 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE-----EEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEEEEEECCCEEEEEECCCCCE--EEEEECCC
T ss_conf 11111100012446411222111111100246532-----102478899999993799699999999969--99997999
Q ss_pred C-CEEEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 7-8479999089989999987995489993
Q 000346 247 Q-PITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 247 ~-~VssIsfSPdG~lLaSgS~DGtIrIWDi 275 (1630)
. ....+.+.+++..+++++.||.|++||.
T Consensus 281 ~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 281 RIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred CCCCEEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 863329999951999999989997999958
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.5e-22 Score=179.28 Aligned_cols=257 Identities=10% Similarity=0.108 Sum_probs=177.8
Q ss_pred EEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCC-------EEEEECCCCCEEEEEE------ECCC
Q ss_conf 6655533578999999189999489999999989-909999889995-------8999717999899999------2899
Q 000346 8 HLDLRHVGRGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGS-------RIASIDINSPVVRMAY------SPTS 73 (1630)
Q Consensus 8 ~Lelq~vgrg~~kp~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~-------~i~tl~~~~~VtsIaf------Spd~ 73 (1630)
++..-++.+++ ...|.++++++ +++++++. ++|++||..+.. ......+...+..+.. +...
T Consensus 3 ~~~~~~~~~~H--~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (393)
T d1sq9a_ 3 FIATANAGKAH--DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78 (393)
T ss_dssp EEEEEEESSCS--SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred EEEEEECCCCC--CCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCC
T ss_conf 58245208763--67127999969--999999799969987898788776540467654204771676667500157998
Q ss_pred CCEEEEEECCCEEEEEECCCCCE---EEEECCCCCEEEEECCCEEEEEECCC-----CCEEEEEECCCCEEEEEECCCCC
Q ss_conf 98999998999299997899957---99976899737863398199999499-----99999974287089999813698
Q 000346 74 GHAVVAILEDCTIRSCDFDTEQS---FVLHSPEKKMESISVDTEVHLALTPL-----QPVVFFGFHRRMSVTVVGTVEGG 145 (1630)
Q Consensus 74 g~lLvSgS~DGtIrIWDl~tgk~---~i~fspdg~~vSgs~Dgti~I~~spd-----g~~IaSgs~Dg~tI~IwDi~sg~ 145 (1630)
..++++++.|+.|++|++..... ....................+.+.++ +..+++++.|+ .+.+|++....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~vw~~~~~~ 157 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-TTYIWKFHPFA 157 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-CEEEEEEESSS
T ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCC-CEEEEEEECCC
T ss_conf 76899994899199998228982056512456324311578966899984478865421799983898-19998740477
Q ss_pred C----------------CCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-------CCCEEE
Q ss_conf 4----------------46266048998949999908999999996797199998578729999943-------885256
Q 000346 146 R----------------APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-------DNTIKL 202 (1630)
Q Consensus 146 ~----------------~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-------~~~V~i 202 (1630)
. ........+...+++++|+|++ +|++|+.|++|++||+.+++.+..+.. ...|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~- 235 (393)
T d1sq9a_ 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR- 235 (393)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-
T ss_pred CCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE-
T ss_conf 534102331032000145100025789867899978999-899993898299986023321100001111124256387-
Q ss_pred CCCCCEEECCCCCEEEEEECCC---EEEEEECCCCCCEEEEEE-------------ECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 4750089829997999996799---199998888983049995-------------205878479999089989999987
Q 000346 203 LGAGAFAFHPTLEWLFVGDRRG---TLLAWDVSIERPSMIGII-------------QVGSQPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 203 sGv~sIafSPDg~~LaSGS~DG---tIkIWDl~tgk~~ii~tL-------------~gH~~~VssIsfSPdG~lLaSgS~ 266 (1630)
+++|+|++++|++|+.|+ .|++||+.+++. +..+ .+|...|++++|+|++++|+|++.
T Consensus 236 ----~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 236 ----SVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp ----EEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ----ECCCCCCCCEEEEECCCCCCCEEEECCCCCCEE--EEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECC
T ss_conf ----700466532011242898842100103532134--44311566664310232023586660013898880698779
Q ss_pred CCCEEEEEEEE
Q ss_conf 99548999332
Q 000346 267 DGSLQVWKTRV 277 (1630)
Q Consensus 267 DGtIrIWDi~~ 277 (1630)
|++|++||+..
T Consensus 310 D~~v~vWd~~~ 320 (393)
T d1sq9a_ 310 DGKLRFWDVKT 320 (393)
T ss_dssp TSEEEEEETTT
T ss_pred CCEEEEEECCC
T ss_conf 99899999999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=6.7e-24 Score=189.24 Aligned_cols=236 Identities=14% Similarity=0.199 Sum_probs=178.7
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEEC-CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--
Q ss_conf 999189999489999999989-909999889995899971-7999899999289998999998999299997899957--
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-- 96 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~-~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~-- 96 (1630)
...|++++|+| |++|+. ++|++||..++. . |...|.++.++++ ..+++++.|+++++|+....+.
T Consensus 13 ~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~~~~~ 81 (287)
T d1pgua2 13 NKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKHEFGS 81 (287)
T ss_dssp SSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEEECSS
T ss_pred CCCEEEEEECC----EEEEECCCEEEEEECCCCC-----CCCCCCEEEEEECCC--CEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 98649999895----7898489919999899988-----887787899996599--728988610122211111111122
Q ss_pred ---EEEECCCCCEEEEECCCEEEEE-------------------ECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECC
Q ss_conf ---9997689973786339819999-------------------949999999974287089999813698446266048
Q 000346 97 ---FVLHSPEKKMESISVDTEVHLA-------------------LTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD 154 (1630)
Q Consensus 97 ---~i~fspdg~~vSgs~Dgti~I~-------------------~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~ 154 (1630)
.+.+.+++..+....+..+.++ +.+++..+++++.++..+++|+..... ........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~~~~~~ 160 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-VSFDLKTP 160 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE-EEEECSSC
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEEEC
T ss_conf 10146641678569996033210000110035431012220356521475111000221000210001221-00012102
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-EC-CCCEEECCCCCEEECCC----------CCEEEEEEC
Q ss_conf 9989499999089999999967971999985787299999-43-88525647500898299----------979999967
Q 000346 155 LKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL-QL-DNTIKLLGAGAFAFHPT----------LEWLFVGDR 222 (1630)
Q Consensus 155 H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL-~~-~~~V~isGv~sIafSPD----------g~~LaSGS~ 222 (1630)
|...+++++|+|++.+|++++.|+.|++||+.++...... .. ...|. +++|+|. +.++++|+.
T Consensus 161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~-----~~~~~p~~~~~~~~~~~~~~l~sgs~ 235 (287)
T d1pgua2 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN-----AISWKPAEKGANEEEIEEDLVATGSL 235 (287)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE-----EEEECCCC------CCSCCEEEEEET
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-----EEEECCCCCCCCCCCCCCCEEEEECC
T ss_conf 4785369995167652110111111000000233211000111111110-----00001365410012678870276649
Q ss_pred CCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 99199998888983049995205878479999089989999987995489993
Q 000346 223 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 223 DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi 275 (1630)
|++|++||+.+... .+..+.+|...|+++.|+|++ .+++++.|++|++|++
T Consensus 236 D~~i~iw~~~~~~~-~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 236 DTNIFIYSVKRPMK-IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TSCEEEEESSCTTC-CEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCEEEEEECCCCCE-EEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 99599988899975-899927878985899998999-8999979992999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.8e-22 Score=178.54 Aligned_cols=207 Identities=16% Similarity=0.116 Sum_probs=148.1
Q ss_pred CCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 9589997179-998999992899989999989992999978999579997689973786339819999949999999974
Q 000346 52 GSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGF 130 (1630)
Q Consensus 52 g~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs 130 (1630)
|+..+++.+| ..|++++|+|+ +++|++|+.|++|++||+.+++....+. . ++......+.+++++. +++++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~-----~h~~~v~~v~~~~~g~-~~~~~ 73 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFP-D-----VHATMITGIKTTSKGD-LFTVS 73 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSS-C-----SCSSCEEEEEECTTSC-EEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCC-CCEEEEECCCCEEEEEECCCCCEEEEEC-C-----CCCCCEEEEEEECCCE-EECCC
T ss_conf 8613684888878289999799-9999999089929999999996889983-7-----8877489988403311-21023
Q ss_pred CCCCEEEEEECCCCCC-CCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEECCCCCEE
Q ss_conf 2870899998136984-462660489989499999089999999967971999985787299999438852564750089
Q 000346 131 HRRMSVTVVGTVEGGR-APTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFA 209 (1630)
Q Consensus 131 ~Dg~tI~IwDi~sg~~-~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIa 209 (1630)
.|+ .+++|+...... ........+...+.+++|++++..+++++ ++.+++|+... . ........+. +++
T Consensus 74 ~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~-~~~~~~~~~~-----~~~ 143 (299)
T d1nr0a2 74 WDD-HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--L-TEVPISYNSS-----CVA 143 (299)
T ss_dssp TTT-EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--E-EEEECSSCEE-----EEE
T ss_pred CEE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--C-CCCCCCCCCC-----CCC
T ss_conf 102-688731677620111000111134432100112211111222-22221111111--1-1101111233-----221
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 82999799999679919999888898304999520587847999908998999998799548999332
Q 000346 210 FHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 210 fSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
|+|+++++++++.|+.+++||+.+.+.. ......|...|++++|+|++.++++++.|+.|++|++..
T Consensus 144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~ 210 (299)
T d1nr0a2 144 LSNDKQFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210 (299)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEE-EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111-111111111111111111111111111111111111111
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.6e-22 Score=178.96 Aligned_cols=246 Identities=11% Similarity=0.076 Sum_probs=176.3
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEE----EEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 78999999189999489999999989-90999988999589----99717999899999289998999998999299997
Q 000346 16 RGDHKPLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRI----ASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCD 90 (1630)
Q Consensus 16 rg~~kp~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i----~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWD 90 (1630)
|.+ .|++++|+|++++|++++. ++|++||+.++... ..+.|..+|++++|+++++.++++|+.|+.|++|+
T Consensus 10 h~d----~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 10 PKD----YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSS----CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCC----CEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEE
T ss_conf 989----7888999589999999979992999975699863689885589998899999589997899812653114542
Q ss_pred CCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCC--EEEECCC--CCCEEEEEECC
Q ss_conf 8999579997689973786339819999949999999974287089999813698446--2660489--98949999908
Q 000346 91 FDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAP--TKIKTDL--KKPIVNLACHP 166 (1630)
Q Consensus 91 l~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~--i~il~~H--~~~ItsIafSP 166 (1630)
............... .........+....+++++.++ .+++||.+...... ......+ ........+.+
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 86 LIGSPSFQALTNNEA------NLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp SSSSSSEEECBSCCC------CSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred CCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEEC
T ss_conf 044320000011111------1111111111111111101222-111020234443302300024300120000010001
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEE---C-CCCEEECCCCCEEECC-CCCEEEEEECCCEEEEEECCCCCCE----
Q ss_conf 99999999679719999857872999994---3-8852564750089829-9979999967991999988889830----
Q 000346 167 RLPVLYVAYADGLIRAYNIHTYAVHYTLQ---L-DNTIKLLGAGAFAFHP-TLEWLFVGDRRGTLLAWDVSIERPS---- 237 (1630)
Q Consensus 167 dg~lLaSgS~DGtIkIWDi~t~~~i~tL~---~-~~~V~isGv~sIafSP-Dg~~LaSGS~DGtIkIWDl~tgk~~---- 237 (1630)
.+..+++++.|+.|++||++......... . ...+. +..+.+ ++..+++++.|+.+.+|+.......
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR-----DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE-----EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred CCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEE-----EEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECC
T ss_conf 687024651798478876056763411121025422101-----467636999878865489959999805986401112
Q ss_pred ---EE------EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf ---49------99520587847999908998999998799548999332
Q 000346 238 ---MI------GIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 238 ---ii------~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
.. .....|...+++++|+|++++|++|+.||.|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 3512565553147776235431599669844799987999899999998
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=1.1e-20 Score=165.26 Aligned_cols=189 Identities=11% Similarity=-0.015 Sum_probs=153.7
Q ss_pred EEEEECC-CCCEEEEEECCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCC--EEEEEECCCCCEEEEEC
Q ss_conf 8999948-99999999899099998899958999717999899999289998999998999--29999789995799976
Q 000346 25 HEAAFHP-NQALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC--TIRSCDFDTEQSFVLHS 101 (1630)
Q Consensus 25 ~sIaFSP-dG~lLaSgs~GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DG--tIrIWDl~tgk~~i~fs 101 (1630)
..-+||| ||+++++++.|.|.+||..++..++ +.|...|++++|+|+ +++|++++.+. .|++||.++++
T Consensus 6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~~------ 77 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------ 77 (360)
T ss_dssp GEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------
T ss_pred HCCCCCCCCCCEEEEEECCEEEEEECCCCCEEE-CCCCCCEEEEEECCC-CCEEEEEECCCCCEEEEEECCCCC------
T ss_conf 005146889999999989969999899994899-169998888999899-999999992899899999899994------
Q ss_pred CCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 89973786339819999949999999974287089999813698446266048998949999908999999996797199
Q 000346 102 PEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 181 (1630)
Q Consensus 102 pdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIk 181 (1630)
...+..|...+.+++|+|+++++++++.++.++
T Consensus 78 -----------------------------------------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~ 110 (360)
T d1k32a3 78 -----------------------------------------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM 110 (360)
T ss_dssp -----------------------------------------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred -----------------------------------------------EEEEECCCCEEEEEEECCCCCCCCEECCCCCCC
T ss_conf -----------------------------------------------887508971277412114543210001111100
Q ss_pred EEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEE----------CCCEEEEEECCCCCCEEEEEEECCCCCEE
Q ss_conf 998578729999943-8852564750089829997999996----------79919999888898304999520587847
Q 000346 182 AYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGD----------RRGTLLAWDVSIERPSMIGIIQVGSQPIT 250 (1630)
Q Consensus 182 IWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS----------~DGtIkIWDl~tgk~~ii~tL~gH~~~Vs 250 (1630)
+|+..++.+...+.. ...+. +++|+|++++|+.+. .++.+++|+..+++ ...+..|...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-----~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~ 182 (360)
T d1k32a3 111 TVDLETGKPTVIERSREAMIT-----DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDY 182 (360)
T ss_dssp EEETTTCCEEEEEECSSSCCC-----CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEE
T ss_pred CCCCCCCCEEEEEECCCCCCC-----CHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCC---EEEECCCCCCCC
T ss_conf 000122210000001355202-----301213225665212331211000256542663045571---353035432211
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf 99990899899999879954899933
Q 000346 251 SVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 251 sIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
.+.|+|+|+.|++++.|+.+++|+..
T Consensus 183 ~~~~spdg~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 183 APAFDADSKNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CCCCCCCCCEEEEEECCCCEECCCCC
T ss_conf 00125779999999599855753335
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.8e-19 Score=156.27 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=26.4
Q ss_pred EECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 988999589997179-99899999289998999998999299997899957
Q 000346 47 FDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS 96 (1630)
Q Consensus 47 WDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~ 96 (1630)
|+..+.+..+.+++| +.|.+ +++++ |++|++|+.|++|++||+.++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~ 49 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKC 49 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEEC-CCEEEEEECCCEEEEEECCCCCE
T ss_conf 989988758898886875099-99978-99999991899099998999979
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=3.3e-20 Score=161.78 Aligned_cols=250 Identities=14% Similarity=0.055 Sum_probs=148.5
Q ss_pred EECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEEECCCCCEEEEECCCEEEEEE-CCCCCEEEE
Q ss_conf 97179-99899999289998999998999299997899957------99976899737863398199999-499999999
Q 000346 57 SIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS------FVLHSPEKKMESISVDTEVHLAL-TPLQPVVFF 128 (1630)
Q Consensus 57 tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~------~i~fspdg~~vSgs~Dgti~I~~-spdg~~IaS 128 (1630)
..++| +.|+++++++ +++++++.|++|++||..+.+. ..........+. .......+.. ......+++
T Consensus 9 ~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEC---CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCE-EEEEEEEECCCCCCCCEEEE
T ss_conf 0876367127999969---9999997999699878987887765404676542047716-76667500157998768999
Q ss_pred EECCCCEEEEEECCCCCCCCEE---E-----ECCCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCC------
Q ss_conf 7428708999981369844626---6-----0489989499999089-----9999999679719999857872------
Q 000346 129 GFHRRMSVTVVGTVEGGRAPTK---I-----KTDLKKPIVNLACHPR-----LPVLYVAYADGLIRAYNIHTYA------ 189 (1630)
Q Consensus 129 gs~Dg~tI~IwDi~sg~~~~i~---i-----l~~H~~~ItsIafSPd-----g~lLaSgS~DGtIkIWDi~t~~------ 189 (1630)
++.|+ .|++|+.......... . ...+...+..++|.++ +.++++++.|+++++|++....
T Consensus 85 ~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 85 TSFSG-DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EETTS-CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EECCC-CEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 94899-19999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred ---------EEEEEEC----CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEE----EEEEECCCCCEEEE
Q ss_conf ---------9999943----885256475008982999799999679919999888898304----99952058784799
Q 000346 190 ---------VHYTLQL----DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSM----IGIIQVGSQPITSV 252 (1630)
Q Consensus 190 ---------~i~tL~~----~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~i----i~tL~gH~~~VssI 252 (1630)
....... ...+. +++|+|++ ++++|+.|++|++||+.++++.. ...+.+|..+|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l 237 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFAT-----SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCC-----EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred EEEECCCEECCCCEECCCCCCCCEE-----EEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 3310320001451000257898678-----99978999-89999389829998602332110000111112425638770
Q ss_pred EEECCCCEEEEEECCCC---EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99089989999987995---489993320399999975431257764334612100025996212489727887578999
Q 000346 253 AWLPMLRLLVTLCRDGS---LQVWKTRVIINPNRPPMQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLN 329 (1630)
Q Consensus 253 sfSPdG~lLaSgS~DGt---IrIWDi~~~~~pnk~~~~a~fFe~~~I~Sidi~~iLs~~gge~vy~l~ri~~v~~HP~~N 329 (1630)
+|+|++++|++++.|++ |++||+..... ...+ ..............-+...++++.|+|..+
T Consensus 238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~------~~~l---------~~~~~~~~~~~~~~gH~~~V~~l~fspd~~ 302 (393)
T d1sq9a_ 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGER------IGSL---------SVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302 (393)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCE------EEEE---------CBC--------CCBSBSSCEEEEEECSSSS
T ss_pred CCCCCCCEEEEECCCCCCCEEEECCCCCCEE------EEEE---------CCCCCCCCCEEEEECCCCCEEEECCCCCCC
T ss_conf 0466532011242898842100103532134------4431---------156666431023202358666001389888
Q ss_pred CEE
Q ss_conf 136
Q 000346 330 LAV 332 (1630)
Q Consensus 330 l~a 332 (1630)
+++
T Consensus 303 ~l~ 305 (393)
T d1sq9a_ 303 TLC 305 (393)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 069
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=4.7e-19 Score=153.16 Aligned_cols=237 Identities=12% Similarity=0.070 Sum_probs=146.0
Q ss_pred EEECCCCC-E-EEEEEC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-C
Q ss_conf 99948999-9-999989-909999889995899971799989999928999899999899929999789995799976-8
Q 000346 27 AAFHPNQA-L-IAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHS-P 102 (1630)
Q Consensus 27 IaFSPdG~-l-LaSgs~-GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fs-p 102 (1630)
..++.+.. + +++... +.|++||..+++.+.++.++..+..++|+|| |+++++++.|+.+++||+.+++...... +
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~ 102 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK 102 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEEEEE
T ss_conf 0216798708999975999799999999959999968998038999899-999999958998899975688604899986
Q ss_pred CCCEEEEECCCEEEEEECCCCCEEEEEE-CCCCEEEEEECCCCCCCCEEEECCCCCC-----------EEEEEECCCCCE
Q ss_conf 9973786339819999949999999974-2870899998136984462660489989-----------499999089999
Q 000346 103 EKKMESISVDTEVHLALTPLQPVVFFGF-HRRMSVTVVGTVEGGRAPTKIKTDLKKP-----------IVNLACHPRLPV 170 (1630)
Q Consensus 103 dg~~vSgs~Dgti~I~~spdg~~IaSgs-~Dg~tI~IwDi~sg~~~~i~il~~H~~~-----------ItsIafSPdg~l 170 (1630)
.+. +.......+.++|++..+++++ .++ .+.+||...+ .+......|... ...+.+++++..
T Consensus 103 ~~~---~~~~~~~s~~~spDG~~l~v~~~~~~-~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~ 176 (426)
T d1hzua2 103 IGI---EARSVESSKFKGYEDRYTIAGAYWPP-QFAIMDGETL--EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 176 (426)
T ss_dssp CCS---EEEEEEECCSTTCTTTEEEEEEEESS-EEEEEETTTC--CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred CCC---CCCCEEEEEEECCCCCEEEEEECCCC-EEEEECCCCC--CEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCE
T ss_conf 788---87645885002688987999635897-6999857764--12578622677736436427885038998787878
Q ss_pred EEEEE-CCCEEEEEECCCCC--EEEEEECCCCEEECCCCCEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEEEEEEC--
Q ss_conf 99996-79719999857872--999994388525647500898299979999967-9919999888898304999520--
Q 000346 171 LYVAY-ADGLIRAYNIHTYA--VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIERPSMIGIIQV-- 244 (1630)
Q Consensus 171 LaSgS-~DGtIkIWDi~t~~--~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~-DGtIkIWDl~tgk~~ii~tL~g-- 244 (1630)
++... ..+.+.+++..... ..........+. .+.|+|++++++++.. +..+.+|+..+++. +.....
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~ 249 (426)
T d1hzua2 177 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA-----DGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGK 249 (426)
T ss_dssp EEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE-----EEEECTTSCEEEEEETTCSEEEEEETTTTEE--EEEEECSS
T ss_pred EEEECCCCCEEEEEEECCCCCEEEEEECCCCCCE-----EEEECCCCCEEEEEEECCCCEEEEECCCCCE--EEEECCCC
T ss_conf 8885278976999992466520457756677537-----6137788867886420110000000255627--88750587
Q ss_pred CCCCEEEEEEECCCC-EE--EEEECCCCEEEEEEEE
Q ss_conf 587847999908998-99--9998799548999332
Q 000346 245 GSQPITSVAWLPMLR-LL--VTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 245 H~~~VssIsfSPdG~-lL--aSgS~DGtIrIWDi~~ 277 (1630)
+........+...+. .. ++.+.|+.+.+|+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~ 285 (426)
T d1hzua2 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285 (426)
T ss_dssp CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred CCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 444342011006987745774157896598852256
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.2e-18 Score=150.16 Aligned_cols=238 Identities=13% Similarity=0.152 Sum_probs=174.4
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCC---CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE-
Q ss_conf 9189999489999999989-90999988999589997179---998999992899989999989992999978999579-
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDIN---SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF- 97 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~---~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~- 97 (1630)
.|.+++|+|+ .+|++++. +.|++|+............. .......++++ +..+++++.|+.|++|++.+....
T Consensus 55 ~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~~~~~~~~ 132 (355)
T d1nexb2 55 GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVP 132 (355)
T ss_dssp CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEECCC-----
T ss_pred CEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCEEEEECCCCCEEC
T ss_conf 8899998699-9999996452443211111111111100111111111111123-2204554388868999856773001
Q ss_pred ----------EEECCCCCE--EE-EECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEE
Q ss_conf ----------997689973--78-63398199999499999999742870899998136984462660489989499999
Q 000346 98 ----------VLHSPEKKM--ES-ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLAC 164 (1630)
Q Consensus 98 ----------i~fspdg~~--vS-gs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIaf 164 (1630)
....+.... .. ............+++..++.+..|+ .+++||..++ .......++...+.++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~-~i~~~d~~~~--~~~~~~~~~~~~~~~~~~ 209 (355)
T d1nexb2 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN-TLIVWDVAQM--KCLYILSGHTDRIYSTIY 209 (355)
T ss_dssp ------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTS-CEEEEETTTT--EEEEEECCCSSCEEEEEE
T ss_pred CCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCC-EEEEEECCCC--CCEEEEECCCCCCCCCCC
T ss_conf 2465200010000011234012101100222100002563344211442-0444301311--000110001233211111
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEE
Q ss_conf 08999999996797199998578729999943-88525647500898299979999967991999988889830499952
Q 000346 165 HPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQ 243 (1630)
Q Consensus 165 SPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~ 243 (1630)
++++..+++++.|+.|++||.+++..+..+.+ ...|. ++.+++ +++++++.|+.|++||+.+... . +.
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-----~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~--~~ 278 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG-----LLRLSD--KFLVSAAADGSIRGWDANDYSR--K--FS 278 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCC-----EEEECS--SEEEEECTTSEEEEEETTTCCE--E--EE
T ss_pred CCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCC-----CCCCCC--CEEEEEECCCCCCCCCCCCCCE--E--CC
T ss_conf 12100210124563687630122111111111111111-----112321--0033320111111111111110--0--01
Q ss_pred CCCCCEEEE-EEECCCCEEEEEECCCCEEEEEEEE
Q ss_conf 058784799-9908998999998799548999332
Q 000346 244 VGSQPITSV-AWLPMLRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 244 gH~~~VssI-sfSPdG~lLaSgS~DGtIrIWDi~~ 277 (1630)
.|...+.++ .+++++.++++++ |+.|++||+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~t 312 (355)
T d1nexb2 279 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 312 (355)
T ss_dssp EECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCC
T ss_conf 24688229999849998999980-99799999999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=1.6e-16 Score=134.25 Aligned_cols=235 Identities=21% Similarity=0.202 Sum_probs=181.1
Q ss_pred CCEEEEECCCCCEEEEEEC--CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 9189999489999999989--9099998899958999717999899999289998-999998999299997899957999
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGH-AVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~--GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~-lLvSgS~DGtIrIWDl~tgk~~i~ 99 (1630)
.+.+++|+|||++|++++. +.|.+||+.+++.+..+..+..+..+.|+++ +. .++++..++.+.+|+..+++....
T Consensus 33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCCCCEEEEE
T ss_conf 8369999289899999978999899999998941032000246431100011-111111111110011001243024320
Q ss_pred ECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECC-C
Q ss_conf 768997378633981999994999999997428708999981369844626604899894999990899999999679-7
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-G 178 (1630)
Q Consensus 100 fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~D-G 178 (1630)
.. .......+.+.+++..++........+.+|+..+. ........ ...+..+.++|++..+++++.+ +
T Consensus 112 ~~--------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (301)
T d1l0qa2 112 VK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK--AVINTVSV-GRSPKGIAVTPDGTKVYVANFDSM 180 (301)
T ss_dssp EE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTT
T ss_pred CC--------CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCC--CEEEECCC-CCCCEEEEEECCCCCEEEECCCCC
T ss_conf 24--------44442378760589715542011110011000146--30353156-788428886046540131012111
Q ss_pred EEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEEEC---CCEEEEEECCCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 19999857872999994388525647500898299979999967---991999988889830499952058784799990
Q 000346 179 LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWL 255 (1630)
Q Consensus 179 tIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~---DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfS 255 (1630)
.+.+|+.........+....... .+.|++++..+++++. ++.|++||..+++. +..+.. ...+.+++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~-~~~~~~va~s 252 (301)
T d1l0qa2 181 SISVIDTVTNSVIDTVKVEAAPS-----GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPV-GPDPAGIAVT 252 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSEEE-----EEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEEC-CSSEEEEEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCCC-----EEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE--EEEECC-CCCEEEEEEE
T ss_conf 11111111000111013357750-----311011110111100210000232365699819--999848-9987799991
Q ss_pred CCCCEE-EEEECCCCEEEEEEEE
Q ss_conf 899899-9998799548999332
Q 000346 256 PMLRLL-VTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 256 PdG~lL-aSgS~DGtIrIWDi~~ 277 (1630)
|||+++ ++++.|++|++||+.+
T Consensus 253 pdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 253 PDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEECCCCEEEEEECCC
T ss_conf 89899999989999699999999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.5e-18 Score=149.39 Aligned_cols=208 Identities=14% Similarity=0.201 Sum_probs=155.6
Q ss_pred CCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-------EEEECCCCCEEEEECCCEEEEEE----
Q ss_conf 9589997179-99899999289998999998999299997899957-------99976899737863398199999----
Q 000346 52 GSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS-------FVLHSPEKKMESISVDTEVHLAL---- 119 (1630)
Q Consensus 52 g~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~-------~i~fspdg~~vSgs~Dgti~I~~---- 119 (1630)
.+.++++.+| .+|++++|++ |++|+.||+|++||..++.. ++.++++...++++.|+++++|.
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~ 77 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH 77 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred CCEEEEECCCCCCEEEEEECC-----EEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCC
T ss_conf 603499988798649999895-----789848991999989998888778789999659972898861012221111111
Q ss_pred -----------CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCC
Q ss_conf -----------49999999974287089999813698446266048998949999908999999996797-199998578
Q 000346 120 -----------TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG-LIRAYNIHT 187 (1630)
Q Consensus 120 -----------spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG-tIkIWDi~t 187 (1630)
.+++ .++....+. .+.+|+...+ .....+.. ...+ .++++++..+++++.|+ .+++|++..
T Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~ 150 (287)
T d1pgua2 78 EFGSQPKVASANNDG-FTAVLTNDD-DLLILQSFTG--DIIKSVRL-NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSD 150 (287)
T ss_dssp ECSSCEEEEEECSSS-EEEEEETTS-EEEEEETTTC--CEEEEEEC-SSCE--EEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred CCCCCEEEEEECCCC-CEEEEEECC-CCEEEECCCE--EEEEECCC-CCEE--EEEECCCCCEEEECCCCCEEEEEECCC
T ss_conf 112210146641678-569996033-2100001100--35431012-2203--565214751110002210002100012
Q ss_pred CCEEEEEEC--CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECC--------
Q ss_conf 729999943--8852564750089829997999996799199998888983049995205878479999089--------
Q 000346 188 YAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPM-------- 257 (1630)
Q Consensus 188 ~~~i~tL~~--~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPd-------- 257 (1630)
......+.. ...+. +++|+|++.+|++|+.|+.|++||+.++.. ....+..|...|.+++|+|.
T Consensus 151 ~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 224 (287)
T d1pgua2 151 LEVSFDLKTPLRAKPS-----YISISPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEE 224 (287)
T ss_dssp EEEEEECSSCCSSCEE-----EEEECTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------C
T ss_pred CCEEEEEEECCCCCEE-----EEEECCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 2100012102478536-----999516765211011111100000023321-1000111111110000013654100126
Q ss_pred --CCEEEEEECCCCEEEEEEEE
Q ss_conf --98999998799548999332
Q 000346 258 --LRLLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 258 --G~lLaSgS~DGtIrIWDi~~ 277 (1630)
+.++++++.|++|++|++..
T Consensus 225 ~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 225 IEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp CSCCEEEEEETTSCEEEEESSC
T ss_pred CCCCEEEEECCCCEEEEEECCC
T ss_conf 7887027664999599988899
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.6e-16 Score=132.71 Aligned_cols=225 Identities=13% Similarity=0.134 Sum_probs=138.3
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---EE
Q ss_conf 9189999489999999989-9099998899958999717999899999289998999998999299997899957---99
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---FV 98 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~---~i 98 (1630)
.|.+++| ++++|++++. +.|++|+...+.............. .+... ...++++..++.+++|+...... ..
T Consensus 57 ~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T d1p22a2 57 SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRR 132 (293)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred CEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC-CCCEEECCCCCCEEEEECCCCCCCCCCC
T ss_conf 7763423--630021001110110000024641001111110000-11111-1000001356630686134454442121
Q ss_pred EECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 97689973786339819999949999999974287089999813698446266048998949999908999999996797
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG 178 (1630)
.+.. +........ .....+++++.|+ .+++||..++ .+...+.++...+..+.++ +..+++++.|+
T Consensus 133 ~~~~-------~~~~v~~~~--~~~~~~~~~s~d~-~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg 198 (293)
T d1p22a2 133 VLVG-------HRAAVNVVD--FDDKYIVSASGDR-TIKVWNTSTC--EFVRTLNGHKRGIACLQYR--DRLVVSGSSDN 198 (293)
T ss_dssp EECC-------CSSCEEEEE--EETTEEEEEETTS-EEEEEETTTC--CEEEEEECCSSCEEEEEEE--TTEEEEEETTS
T ss_pred CCCC-------CCCCCCCCE--ECCCCCCCCCCCC-CEEEECCCCC--CEEEEECCCCCCCCCCCCC--CCEEEEECCCC
T ss_conf 0001-------135431100--0002201106998-6041007888--3889971554453221689--87588765899
Q ss_pred EEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCC-------CCEEEEEEECCCCCEE
Q ss_conf 199998578729999943-88525647500898299979999967991999988889-------8304999520587847
Q 000346 179 LIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIE-------RPSMIGIIQVGSQPIT 250 (1630)
Q Consensus 179 tIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tg-------k~~ii~tL~gH~~~Vs 250 (1630)
.|++||+++...+..... ...+. .+++++.+|++++.|+.|++||+... ....+..+.+|...|+
T Consensus 199 ~i~i~d~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~ 271 (293)
T d1p22a2 199 TIRLWDIECGACLRVLEGHEELVR-------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271 (293)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEE-------EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred EEEEEECCCCEEEEEECCCCEEEE-------ECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEE
T ss_conf 899986655614665214310000-------0145410799986799799998888864445677545578458899889
Q ss_pred EEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 999908998999998799548999
Q 000346 251 SVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 251 sIsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
+++|+ +.+|++++.||+|++||
T Consensus 272 ~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 272 RLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEC--CCEEEEEECCCEEEEEC
T ss_conf 99971--99999992299899959
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=3.5e-18 Score=146.66 Aligned_cols=259 Identities=13% Similarity=0.050 Sum_probs=161.9
Q ss_pred CEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCC-CEEEEEE
Q ss_conf 589997179-99899999289998999998999299997899957999768997378633981999994999-9999974
Q 000346 53 SRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGF 130 (1630)
Q Consensus 53 ~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg-~~IaSgs 130 (1630)
+.+...++| ..|++++|+|+ +++|++++.|++|++||++++.....+. ...++.....++.+++++ ..+++++
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~h~~~V~~v~f~~~~~~~l~sg~ 76 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLL----QSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEE----EEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred CEEECCCCCCCCEEEEEEECC-CCEEEEEECCCEEEEEECCCCCCCEEEE----EECCCCCCEEEEEEECCCCCEEEECC
T ss_conf 759768899897888999589-9999999799929999756998636898----85589998899999589997899812
Q ss_pred CCCCEEEEEECCCCCCCCEEEECCC-CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCEEECCCCC
Q ss_conf 2870899998136984462660489-98949999908999999996797199998578729999943--88525647500
Q 000346 131 HRRMSVTVVGTVEGGRAPTKIKTDL-KKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--DNTIKLLGAGA 207 (1630)
Q Consensus 131 ~Dg~tI~IwDi~sg~~~~i~il~~H-~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~--~~~V~isGv~s 207 (1630)
.|+ .|++|+.... ........+ ........+.++...+++++.|+++++||++.......... ...........
T Consensus 77 ~d~-~v~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (342)
T d1yfqa_ 77 VQG-EILKVDLIGS--PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp TTS-CEEEECSSSS--SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred CCC-CEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEE
T ss_conf 653-1145420443--2000001111111111111111111111012221110202344433023000243001200000
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCCE-EEEEEECCCCCEEEEEEEC-CCCEEEEEECCCCEEEEEEEEECCCCCCC
Q ss_conf 898299979999967991999988889830-4999520587847999908-99899999879954899933203999999
Q 000346 208 FAFHPTLEWLFVGDRRGTLLAWDVSIERPS-MIGIIQVGSQPITSVAWLP-MLRLLVTLCRDGSLQVWKTRVIINPNRPP 285 (1630)
Q Consensus 208 IafSPDg~~LaSGS~DGtIkIWDl~tgk~~-ii~tL~gH~~~VssIsfSP-dG~lLaSgS~DGtIrIWDi~~~~~pnk~~ 285 (1630)
+.+.+.+..+++++.|+.+++|++...... .......+...+.+..+.+ ++..+++++.||.+.+|+...........
T Consensus 154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECC
T ss_conf 10001687024651798478876056763411121025422101467636999878865489959999805986401112
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEE
Q ss_conf 75431257764334612100025996212489727887578999136
Q 000346 286 MQANFFEPASIESIDIPRILSQQGGEAVYPLPRVRALEVHPRLNLAV 332 (1630)
Q Consensus 286 ~~a~fFe~~~I~Sidi~~iLs~~gge~vy~l~ri~~v~~HP~~Nl~a 332 (1630)
....+ ...+. ..........+.++.|||..+.++
T Consensus 234 ~~~~~---------~~~~~----~~~~~~~~~~v~~l~~sp~~~~la 267 (342)
T d1yfqa_ 234 KRFAF---------RCHRL----NLKDTNLAYPVNSIEFSPRHKFLY 267 (342)
T ss_dssp TCEEE---------ECCCC----CTTCCSSCCCEEEEEECTTTCCEE
T ss_pred CCCEE---------EEEEE----CCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 35125---------65553----147776235431599669844799
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=9e-17 Score=136.16 Aligned_cols=246 Identities=12% Similarity=0.074 Sum_probs=162.4
Q ss_pred EECCCCCCCCCCCEEEEECCCCCEEEEEEC-C--EEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 533578999999189999489999999989-9--0999988999589997179998999992899989999989992999
Q 000346 12 RHVGRGDHKPLQPHEAAFHPNQALIAVAIG-T--YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRS 88 (1630)
Q Consensus 12 q~vgrg~~kp~~V~sIaFSPdG~lLaSgs~-G--tI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrI 88 (1630)
+.++++. +|.+++|+|||++|++++. + .|++||..+++......+...|.+++|+|+ +++|++++.++.+++
T Consensus 37 ~~~~~~~----~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~ 111 (360)
T d1k32a3 37 LKVPEPL----RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMT 111 (360)
T ss_dssp EECSCCS----CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEEE
T ss_pred EECCCCC----CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCC-CCCCCEECCCCCCCC
T ss_conf 9916999----88889998999999999928998999998999948875089712774121145-432100011111000
Q ss_pred EECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEE----------CCCCEEEEEECCCCCCCCEEEECCCCCC
Q ss_conf 978999579997689973786339819999949999999974----------2870899998136984462660489989
Q 000346 89 CDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGF----------HRRMSVTVVGTVEGGRAPTKIKTDLKKP 158 (1630)
Q Consensus 89 WDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs----------~Dg~tI~IwDi~sg~~~~i~il~~H~~~ 158 (1630)
|+..+++....+... ......+.+++++.+++++. .++ .+++|+...+ ... ....+...
T Consensus 112 ~~~~~~~~~~~~~~~-------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~-~~~v~d~~~~--~~~-~~~~~~~~ 180 (360)
T d1k32a3 112 VDLETGKPTVIERSR-------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ-AIHVYDMEGR--KIF-AATTENSH 180 (360)
T ss_dssp EETTTCCEEEEEECS-------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE-EEEEEETTTT--EEE-ECSCSSSB
T ss_pred CCCCCCCEEEEEECC-------CCCCCCHHHCCCEEEEEEECCCCCCCEEECCCC-CEEEECCCCC--CEE-EECCCCCC
T ss_conf 001222100000013-------552023012132256652123312110002565-4266304557--135-30354322
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCE-------EEEEEC-CCCEE---E--------------CC---------
Q ss_conf 49999908999999996797199998578729-------999943-88525---6--------------47---------
Q 000346 159 IVNLACHPRLPVLYVAYADGLIRAYNIHTYAV-------HYTLQL-DNTIK---L--------------LG--------- 204 (1630)
Q Consensus 159 ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~-------i~tL~~-~~~V~---i--------------sG--------- 204 (1630)
+..+.|+|+++.|++++.|+.+++||...... ...+.. ...+. . .+
T Consensus 181 ~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 260 (360)
T d1k32a3 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260 (360)
T ss_dssp EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred CCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECC
T ss_conf 11001257799999995998557533354402320364117985246960120687776715531136526654001012
Q ss_pred -----CCCEEECCCC-------------CEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf -----5008982999-------------7999996799199998888983049995205878479999089989999987
Q 000346 205 -----AGAFAFHPTL-------------EWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCR 266 (1630)
Q Consensus 205 -----v~sIafSPDg-------------~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~ 266 (1630)
...+..++++ .++++++.++.+++||+.+++ ... |...|.+++|+|||++|++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~---~~~~v~~~~~SpDG~~l~~~~~ 334 (360)
T d1k32a3 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VTE---VKNNLTDLRLSADRKTVMVRKD 334 (360)
T ss_dssp CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---EEE---EEEEEEEEEECTTSCEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCE---EEE---ECCCCCEEEECCCCCEEEEEEC
T ss_conf 4767526754138985699997359970699964899879999799974---988---6488687999998989999978
Q ss_pred CCCEEEEEEEEEC
Q ss_conf 9954899933203
Q 000346 267 DGSLQVWKTRVII 279 (1630)
Q Consensus 267 DGtIrIWDi~~~~ 279 (1630)
||.|++|++....
T Consensus 335 Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 335 DGKIYTFPLEKPE 347 (360)
T ss_dssp TSCEEEEESSCTT
T ss_pred CCEEEEEECCCCC
T ss_conf 9949999999998
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.79 E-value=2.2e-17 Score=140.66 Aligned_cols=250 Identities=9% Similarity=-0.056 Sum_probs=167.2
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEE--ECC---C-CCEEEEEEECCCCCEE-EEEECCCEEEEEECCCC
Q ss_conf 9189999489999999989-9099998899958999--717---9-9989999928999899-99989992999978999
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIAS--IDI---N-SPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTE 94 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~t--l~~---~-~~VtsIafSpd~g~lL-vSgS~DGtIrIWDl~tg 94 (1630)
.++.++|||||+++++++. +++++||+.+++.... +.. + ..+.++.|+|+ |+++ +++..++.+++||..++
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD-G~~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTC
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCC-CCEEEEEECCCCEEEEECCCCC
T ss_conf 803899989999999995899889997568860489998678887645885002688-9879996358976999857764
Q ss_pred CEEEEECCCCCE----EEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCE
Q ss_conf 579997689973----7863398199999499999999742870899998136984462660489989499999089999
Q 000346 95 QSFVLHSPEKKM----ESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 95 k~~i~fspdg~~----vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~l 170 (1630)
.+...+...... ..........+..++++..++....+...+.+++..... ........+...+..+.++|++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 220 (426)
T d1hzua2 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLTVTSIGAAPFLADGGWDSSHRY 220 (426)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS-SCEEEEEECCSSEEEEEECTTSCE
T ss_pred CEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCC-CEEEEEECCCCCCEEEEECCCCCE
T ss_conf 1257862267773643642788503899878787888852789769999924665-204577566775376137788867
Q ss_pred EEEEE-CCCEEEEEECCCCCEEEEEEC-C--CCEEECCCCCEEECCCC-CEE--EEEECCCEEEEEECCCC-----CCEE
Q ss_conf 99996-797199998578729999943-8--85256475008982999-799--99967991999988889-----8304
Q 000346 171 LYVAY-ADGLIRAYNIHTYAVHYTLQL-D--NTIKLLGAGAFAFHPTL-EWL--FVGDRRGTLLAWDVSIE-----RPSM 238 (1630)
Q Consensus 171 LaSgS-~DGtIkIWDi~t~~~i~tL~~-~--~~V~isGv~sIafSPDg-~~L--aSGS~DGtIkIWDl~tg-----k~~i 238 (1630)
++++. .+..+.+++..+++....... . .... ...+...+ ..+ +..+.|+.+.+|+.... ....
T Consensus 221 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~ 295 (426)
T d1hzua2 221 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR-----GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 295 (426)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC-----CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCC-----EEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEE
T ss_conf 88642011000000025562788750587444342-----0110069877457741578965988522566520330258
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEE-------EECCCCEEEEEEEEEC
Q ss_conf 9995205878479999089989999-------9879954899933203
Q 000346 239 IGIIQVGSQPITSVAWLPMLRLLVT-------LCRDGSLQVWKTRVII 279 (1630)
Q Consensus 239 i~tL~gH~~~VssIsfSPdG~lLaS-------gS~DGtIrIWDi~~~~ 279 (1630)
...+.+|...+.+++|+|+++++++ ++.|++|++||+.+..
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf 689866887636787489986188850679880228879999898787
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=4.1e-15 Score=123.80 Aligned_cols=225 Identities=13% Similarity=0.031 Sum_probs=125.3
Q ss_pred CEEEEEEC-CEEEEEECCCCCEEEEEC-C-C-CCEEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf 99999989-909999889995899971-7-9-9989999928999899-9998999299997899957999768997378
Q 000346 34 ALIAVAIG-TYIIEFDTLTGSRIASID-I-N-SPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQSFVLHSPEKKMES 108 (1630)
Q Consensus 34 ~lLaSgs~-GtI~IWDl~tg~~i~tl~-~-~-~~VtsIafSpd~g~lL-vSgS~DGtIrIWDl~tgk~~i~fspdg~~vS 108 (1630)
.++++++. ++|.+||..+++.+.++. + + ..+.+++|+|+ |+++ ++++.++.|.+||+.+++.............
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCC-CCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 6999976799899999999949999987788998237999999-899999978999499999999929888724777312
Q ss_pred EECCCEEEEEECCCCCEEEEEEC------------CCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 63398199999499999999742------------870899998136984462660489989499999089999999967
Q 000346 109 ISVDTEVHLALTPLQPVVFFGFH------------RRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYA 176 (1630)
Q Consensus 109 gs~Dgti~I~~spdg~~IaSgs~------------Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~ 176 (1630)
.. ....+.+++++..++.+.. +. .+.+||...+ ........ ...+..++|+|++.++++++.
T Consensus 81 ~~--~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 154 (337)
T d1pbyb_ 81 VK--SLFGAALSPDGKTLAIYESPVRLELTHFEVQPT-RVALYDAETL--SRRKAFEA-PRQITMLAWARDGSKLYGLGR 154 (337)
T ss_dssp EE--CTTCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEETTTT--EEEEEEEC-CSSCCCEEECTTSSCEEEESS
T ss_pred CC--CEEEEEECCCCCEEEEEECCCCCEEEECCCCCC-CEEECCCCCC--EEEEECCC-CCCCEEEEECCCCCEEEEECC
T ss_conf 54--025489868775799950477620342034555-2120356677--59884145-687218998688888999717
Q ss_pred CCEEEEEECCCCCEEEEEEC------------------------------------------------------------
Q ss_conf 97199998578729999943------------------------------------------------------------
Q 000346 177 DGLIRAYNIHTYAVHYTLQL------------------------------------------------------------ 196 (1630)
Q Consensus 177 DGtIkIWDi~t~~~i~tL~~------------------------------------------------------------ 196 (1630)
.+.+||..+++...++..
T Consensus 155 --~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (337)
T d1pbyb_ 155 --DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp --SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred --CCCEEEEECCCEEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEE
T ss_conf --750566303727888614775433113577631401466531246632444103660454036761799986888588
Q ss_pred -------CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf -------8852564750089829997999996799199998888983049995205878479999089989999987995
Q 000346 197 -------DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGS 269 (1630)
Q Consensus 197 -------~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGt 269 (1630)
...+. .+.++|++.+++.+ ++.+++||+.+++. +..+. +...+.+++|+|||+++++++.|+.
T Consensus 233 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~ 302 (337)
T d1pbyb_ 233 MREVRIMDVFYF-----STAVNPAKTRAFGA--YNVLESFDLEKNAS--IKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp EEEEEECSSCEE-----EEEECTTSSEEEEE--ESEEEEEETTTTEE--EEEEE-CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred EEEECCCCCCEE-----EEEECCCCEEEEEC--CCCEEEEECCCCCE--EEEEC-CCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 898328875058-----88742661399973--55289998988969--99974-8998899999789999999949992
Q ss_pred EEEEEEEE
Q ss_conf 48999332
Q 000346 270 LQVWKTRV 277 (1630)
Q Consensus 270 IrIWDi~~ 277 (1630)
|++||..+
T Consensus 303 i~v~D~~t 310 (337)
T d1pbyb_ 303 LAAYDAET 310 (337)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
T ss_conf 99999998
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1e-14 Score=120.86 Aligned_cols=235 Identities=11% Similarity=0.036 Sum_probs=159.9
Q ss_pred ECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-CCCCCE
Q ss_conf 9489999999989-90999988999589997179998999992899989999989992999978999579997-689973
Q 000346 29 FHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLH-SPEKKM 106 (1630)
Q Consensus 29 FSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~f-spdg~~ 106 (1630)
.+++.-++++.+. ++|.+||..+++++..+..+..+..++|+|| |+++++++.|+.+++||+.+++..... -+.+.
T Consensus 28 ~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~- 105 (432)
T d1qksa2 28 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS- 105 (432)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCC-CCEEEEECCCCCEEEEEEECCCCEEEEEEECCC-
T ss_conf 787828999976999799998999839999737997137998899-999999828999789981089812889984488-
Q ss_pred EEEECCCEEEEEECCCCCEE-EEEECCCCEEEEEECCCCCCCCEEEECCC-----------CCCEEEEEECCCCCEEE-E
Q ss_conf 78633981999994999999-99742870899998136984462660489-----------98949999908999999-9
Q 000346 107 ESISVDTEVHLALTPLQPVV-FFGFHRRMSVTVVGTVEGGRAPTKIKTDL-----------KKPIVNLACHPRLPVLY-V 173 (1630)
Q Consensus 107 vSgs~Dgti~I~~spdg~~I-aSgs~Dg~tI~IwDi~sg~~~~i~il~~H-----------~~~ItsIafSPdg~lLa-S 173 (1630)
..........++++++.+ +++..++ .+++||..++ .+...+..+ ......+.++|++..++ +
T Consensus 106 --~~~~~~~s~~~SpDG~~l~vs~~~~~-~v~i~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs 180 (432)
T d1qksa2 106 --EARSIETSKMEGWEDKYAIAGAYWPP-QYVIMDGETL--EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180 (432)
T ss_dssp --EEEEEEECCSTTCTTTEEEEEEEETT-EEEEEETTTC--CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred --CCCCEEEECCCCCCCCEEEEECCCCC-EEEEEECCCC--CCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEE
T ss_conf --98776984321888888999817898-2799907655--422540247764352201688850589987899989999
Q ss_pred EECCCEEEEEECCCCCEEEE--EECCCCEEECCCCCEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEEEEEEC-----C
Q ss_conf 96797199998578729999--94388525647500898299979999967-9919999888898304999520-----5
Q 000346 174 AYADGLIRAYNIHTYAVHYT--LQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIERPSMIGIIQV-----G 245 (1630)
Q Consensus 174 gS~DGtIkIWDi~t~~~i~t--L~~~~~V~isGv~sIafSPDg~~LaSGS~-DGtIkIWDl~tgk~~ii~tL~g-----H 245 (1630)
...++.|.+||..+.+.... +....... .+.|+|+++++++++. +..+.++|..+.+. +..+.. |
T Consensus 181 ~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~-----~~~~spdg~~~~va~~~~~~v~v~d~~~~~~--~~~~~~g~~~~~ 253 (432)
T d1qksa2 181 VKETGKILLVDYTDLNNLKTTEISAERFLH-----DGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAIEDTGGQTPH 253 (432)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEE-----EEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSSBC
T ss_pred ECCCCEEEEEECCCCCCCEEEEECCCCCCC-----CCEECCCCCEEEEECCCCCEEEEEECCCCEE--EEEECCCCCCCC
T ss_conf 816882999984378752279983367542-----6538898879999516663677761445268--887214862245
Q ss_pred CCCEEEEEEECCCCEEEEEE-CCCCEEEEEEEE
Q ss_conf 87847999908998999998-799548999332
Q 000346 246 SQPITSVAWLPMLRLLVTLC-RDGSLQVWKTRV 277 (1630)
Q Consensus 246 ~~~VssIsfSPdG~lLaSgS-~DGtIrIWDi~~ 277 (1630)
........+...+...++.. .|+.|.+|....
T Consensus 254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 286 (432)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCCCCEECCCCCCEECCCCCCCCEEEECCCCC
T ss_conf 676641014898831021356883587624566
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=1.4e-15 Score=127.22 Aligned_cols=238 Identities=13% Similarity=-0.038 Sum_probs=140.6
Q ss_pred EEECCCCCEEEEEEC-CEEEEEECCCCCEEEEEC-CC-CCEEEEEEECCCCCEE-EEEECCCEEEEEECCCCCE------
Q ss_conf 999489999999989-909999889995899971-79-9989999928999899-9998999299997899957------
Q 000346 27 AAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-IN-SPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQS------ 96 (1630)
Q Consensus 27 IaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~-~~-~~VtsIafSpd~g~lL-vSgS~DGtIrIWDl~tgk~------ 96 (1630)
++|+++++++++++. ++|.+||+.+++.+.++. .+ ..+.+++|+|| |+++ +++..++.|++||+.+++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCC-CCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 5588999699998699979999999998999999489997045999789-899999978999399996756713123103
Q ss_pred ------------EEEECCCCCE-EEEEC------------CCEEEEEE--------------CCCCCEEEEEECCC----
Q ss_conf ------------9997689973-78633------------98199999--------------49999999974287----
Q 000346 97 ------------FVLHSPEKKM-ESISV------------DTEVHLAL--------------TPLQPVVFFGFHRR---- 133 (1630)
Q Consensus 97 ------------~i~fspdg~~-vSgs~------------Dgti~I~~--------------spdg~~IaSgs~Dg---- 133 (1630)
.+.++++++. ..... +..+.++. .+....++..+.++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 65434547741799990588889997057752156514676248998525632656887310247439999527878998
Q ss_pred --CEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCC--------------------------CEEEEEECCCEEEEEEC
Q ss_conf --08999981369844626604899894999990899--------------------------99999967971999985
Q 000346 134 --MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRL--------------------------PVLYVAYADGLIRAYNI 185 (1630)
Q Consensus 134 --~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg--------------------------~lLaSgS~DGtIkIWDi 185 (1630)
..+.+|++.++ .....+..+. ....+.++|++ ..+.++..+..+.+||.
T Consensus 161 ~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 161 AGPDIYKMDVKTG--KYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp ESSSEEEECTTTC--CEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ECCCCEEEECCCC--CEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 4796269980699--7899996489-866237712552899986499816765123111267325754047834999977
Q ss_pred CCCCEEEEEEC--CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf 78729999943--8852564750089829997999996799199998888983049995205878479999089989999
Q 000346 186 HTYAVHYTLQL--DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 186 ~t~~~i~tL~~--~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaS 263 (1630)
.++........ ...+. .+.+++++.+++... ++.+.+||..+++. +..+. +...+.+++|+|||+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~--~~~~~-~~~~~~~va~s~DG~~l~v 308 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYF-----TGLRSPKDPNQIYGV-LNRLAKYDLKQRKL--IKAAN-LDHTYYCVAFDKKGDKLYL 308 (346)
T ss_dssp TTCCEEEEEEEECSSCEE-----EEEECSSCTTEEEEE-ESEEEEEETTTTEE--EEEEE-CSSCCCEEEECSSSSCEEE
T ss_pred CCCCEEEEEEECCCCEEE-----EEEEECCCCEEEEEC-CCEEEEEECCCCCE--EEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf 788368787631566068-----889717997899942-98389998999939--99974-9997789999689999999
Q ss_pred EECCCCEEEEEEEE
Q ss_conf 98799548999332
Q 000346 264 LCRDGSLQVWKTRV 277 (1630)
Q Consensus 264 gS~DGtIrIWDi~~ 277 (1630)
++.|+.|++||..+
T Consensus 309 ~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 309 GGTFNDLAVFNPDT 322 (346)
T ss_dssp ESBSSEEEEEETTT
T ss_pred EECCCCEEEEECCC
T ss_conf 94899299999965
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1.4e-13 Score=112.51 Aligned_cols=191 Identities=12% Similarity=-0.065 Sum_probs=112.2
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCE---EEE
Q ss_conf 99999899929999789995799976899737863398199999499999999742870899998136984462---660
Q 000346 76 AVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT---KIK 152 (1630)
Q Consensus 76 lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i---~il 152 (1630)
++++.+.|++|.+||..++++...+. .+ .....+.++|+++++++++.|+ .+++||+.++..... ...
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~-------~g-~~~~~v~fSpDG~~l~~~s~dg-~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLD-------TG-YAVHISRLSASGRYLFVIGRDG-KVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEE-------CS-SCEEEEEECTTSCEEEEEETTS-EEEEEETTSSSCCEEEEEECC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEE-------CC-CCEEEEEECCCCCEEEEECCCC-CEEEEEEECCCCEEEEEEECC
T ss_conf 99997699979999899983999973-------79-9713799889999999982899-978998108981288998448
Q ss_pred CCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEC-CCCEE---E---CCCCCEEECCCCCEEE-EEECC
Q ss_conf 4899894999990899999-9996797199998578729999943-88525---6---4750089829997999-99679
Q 000346 153 TDLKKPIVNLACHPRLPVL-YVAYADGLIRAYNIHTYAVHYTLQL-DNTIK---L---LGAGAFAFHPTLEWLF-VGDRR 223 (1630)
Q Consensus 153 ~~H~~~ItsIafSPdg~lL-aSgS~DGtIkIWDi~t~~~i~tL~~-~~~V~---i---sGv~sIafSPDg~~La-SGS~D 223 (1630)
.+|.+.+.+..|+||++++ ++++.++++++||..+++++.++.. ...+. . .....+.++|++..++ +...+
T Consensus 105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~ 184 (432)
T d1qksa2 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184 (432)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 89877698432188888899981789827999076554225402477643522016888505899878999899998168
Q ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCC-CEEEEEEE
Q ss_conf 919999888898304999520587847999908998999998799-54899933
Q 000346 224 GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG-SLQVWKTR 276 (1630)
Q Consensus 224 GtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DG-tIrIWDi~ 276 (1630)
+.+.+|+..+.+...+..+ .+...+..+.|+|+++++++++.++ .+.+|+..
T Consensus 185 ~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp TEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred CEEEEEECCCCCCCEEEEE-CCCCCCCCCEECCCCCEEEEECCCCCEEEEEECC
T ss_conf 8299998437875227998-3367542653889887999951666367776144
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.71 E-value=1.4e-12 Score=105.02 Aligned_cols=224 Identities=19% Similarity=0.181 Sum_probs=167.4
Q ss_pred CEEEEEEC--CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf 99999989--909999889995899971799989999928999899-999899929999789995799976899737863
Q 000346 34 ALIAVAIG--TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAV-VAILEDCTIRSCDFDTEQSFVLHSPEKKMESIS 110 (1630)
Q Consensus 34 ~lLaSgs~--GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lL-vSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs 110 (1630)
.+++++.. ++|.+||..+++.++++.....+..++|+|+ |+++ ++++.++.|++||+.+++....+..
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spd-G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-------- 72 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPA-------- 72 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEEC--------
T ss_pred EEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC-CCEEEEEECCCCEEEEEECCCCCEEEEEEC--------
T ss_conf 69999978999899999999959999988998369999289-899999978999899999998941032000--------
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCC
Q ss_conf 398199999499999999742870899998136984462660489989499999089999999-9679719999857872
Q 000346 111 VDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYA 189 (1630)
Q Consensus 111 ~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaS-gS~DGtIkIWDi~t~~ 189 (1630)
......+.+.+++..++....+...+.+|+...+ .....+.. .....++.|+|++..+++ +..++.+.+|+..+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
T d1l0qa2 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA 149 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--EEEEECCC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 2464311000111111111111100110012430--24320244-44423787605897155420111100110001463
Q ss_pred EEEEEECCCCEEECCCCCEEECCCCCEEEEEECC-CEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECC-
Q ss_conf 9999943885256475008982999799999679-91999988889830499952058784799990899899999879-
Q 000346 190 VHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRR-GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD- 267 (1630)
Q Consensus 190 ~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~D-GtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~D- 267 (1630)
....+....... .+.++|++..+++++.+ +.+.+|+..... ....... ...+..+.|++++..++.++.+
T Consensus 150 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~ 221 (301)
T d1l0qa2 150 VINTVSVGRSPK-----GIAVTPDGTKVYVANFDSMSISVIDTVTNS--VIDTVKV-EAAPSGIAVNPEGTKAYVTNVDK 221 (301)
T ss_dssp EEEEEECCSSEE-----EEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEEC-SSEEEEEEECTTSSEEEEEEECS
T ss_pred EEEECCCCCCCE-----EEEEECCCCCEEEECCCCCCCCCCCCCCEE--EEECCCC-CCCCCEEECCCCCCCCCCCCCCC
T ss_conf 035315678842-----888604654013101211111111111000--1110133-57750311011110111100210
Q ss_pred --CCEEEEEEEE
Q ss_conf --9548999332
Q 000346 268 --GSLQVWKTRV 277 (1630)
Q Consensus 268 --GtIrIWDi~~ 277 (1630)
+.|++||..+
T Consensus 222 ~~~~v~v~D~~t 233 (301)
T d1l0qa2 222 YFNTVSMIDTGT 233 (301)
T ss_dssp SCCEEEEEETTT
T ss_pred EEEEEEEEECCC
T ss_conf 000232365699
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=4.2e-14 Score=116.34 Aligned_cols=145 Identities=15% Similarity=0.092 Sum_probs=107.4
Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCEEEECC--CCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEEEEEC-CCC
Q ss_conf 9999974287089999813698446266048--998949999908999999-996797199998578729999943-885
Q 000346 124 PVVFFGFHRRMSVTVVGTVEGGRAPTKIKTD--LKKPIVNLACHPRLPVLY-VAYADGLIRAYNIHTYAVHYTLQL-DNT 199 (1630)
Q Consensus 124 ~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~--H~~~ItsIafSPdg~lLa-SgS~DGtIkIWDi~t~~~i~tL~~-~~~ 199 (1630)
.++++++.|+ .|.+||..++ .++..+.. +...+.+++|+||+++++ +++.++.|.+||+.+++.+..+.. ...
T Consensus 2 ~~~vt~~~d~-~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPD-KLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTT-EEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred EEEEEECCCC-EEEEEECCCC--EEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 6999976799-8999999999--499999877889982379999998999999789994999999999298887247773
Q ss_pred EEECCCCCEEECCCCCEEEEEE------------CCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 2564750089829997999996------------7991999988889830499952058784799990899899999879
Q 000346 200 IKLLGAGAFAFHPTLEWLFVGD------------RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRD 267 (1630)
Q Consensus 200 V~isGv~sIafSPDg~~LaSGS------------~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~D 267 (1630)
........++|+|++++++++. .+..+.+||..+++. ...+.. ...+..+.|+|++.++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEESS-
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEE--EEECCC-CCCCEEEEECCCCCEEEEECC-
T ss_conf 1254025489868775799950477620342034555212035667759--884145-687218998688888999717-
Q ss_pred CCEEEEEEE
Q ss_conf 954899933
Q 000346 268 GSLQVWKTR 276 (1630)
Q Consensus 268 GtIrIWDi~ 276 (1630)
.+.+|+..
T Consensus 155 -~~~~~d~~ 162 (337)
T d1pbyb_ 155 -DLHVMDPE 162 (337)
T ss_dssp -SEEEEETT
T ss_pred -CCCEEEEE
T ss_conf -75056630
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.4e-11 Score=97.55 Aligned_cols=248 Identities=9% Similarity=0.110 Sum_probs=114.2
Q ss_pred CCEEEEECCCCCEEEEEEC--CEEEEEECCCCCEEEE----ECCCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf 9189999489999999989--9099998899958999----717999899999289998999998-99929999789995
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIAS----IDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFDTEQ 95 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~--GtI~IWDl~tg~~i~t----l~~~~~VtsIafSpd~g~lLvSgS-~DGtIrIWDl~tgk 95 (1630)
.+.+++|||||++|+++.. +.|++|++........ ......+..++|+|+ |+++++++ .++.+.+|+.....
T Consensus 38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD-g~~l~v~~~~~~~v~~~~~~~~~ 116 (333)
T d1ri6a_ 38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGL 116 (333)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTE
T ss_pred CEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCC-CCEEEECCCCCCCEEEECCCCCC
T ss_conf 88689995897999999778996999999689870798530136998549999599-98874205688830220011100
Q ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCE----EEECCCCCCEEEEEECCCCCEE
Q ss_conf 799976899737863398199999499999999742870899998136984462----6604899894999990899999
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPT----KIKTDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 96 ~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i----~il~~H~~~ItsIafSPdg~lL 171 (1630)
...... ..........+.+++++..++.++.+...+.+|+......... ............++|++++..+
T Consensus 117 ~~~~~~-----~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~ 191 (333)
T d1ri6a_ 117 PVGVVD-----VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 191 (333)
T ss_dssp EEEEEE-----EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CEECCC-----CCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEE
T ss_conf 000010-----037785314988630101310256554205689732687410010001334038875279996020147
Q ss_pred EEEE-CCCEEEEEECCCC----CEEEEEEC-CCCEE-ECCCCCEEECCCCCEEEEEE-CCCEEEEEECCCCCC-EEEEEE
Q ss_conf 9996-7971999985787----29999943-88525-64750089829997999996-799199998888983-049995
Q 000346 172 YVAY-ADGLIRAYNIHTY----AVHYTLQL-DNTIK-LLGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERP-SMIGII 242 (1630)
Q Consensus 172 aSgS-~DGtIkIWDi~t~----~~i~tL~~-~~~V~-isGv~sIafSPDg~~LaSGS-~DGtIkIWDl~tgk~-~ii~tL 242 (1630)
+... ..+...+|+.... .....+.. ..... ......+.+++++++++... .++.+.+|++..... ......
T Consensus 192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (333)
T d1ri6a_ 192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 271 (333)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 86204667217885103555202100223430687765531268995156720550456882787887399978999999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEE-CCCCEEEEEEE
Q ss_conf 20587847999908998999998-79954899933
Q 000346 243 QVGSQPITSVAWLPMLRLLVTLC-RDGSLQVWKTR 276 (1630)
Q Consensus 243 ~gH~~~VssIsfSPdG~lLaSgS-~DGtIrIWDi~ 276 (1630)
..+...+.+++|+|||++|++++ .++.|++|+++
T Consensus 272 ~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 272 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 67899762899907989999998899939999997
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.64 E-value=6.7e-12 Score=99.90 Aligned_cols=246 Identities=9% Similarity=0.012 Sum_probs=139.0
Q ss_pred CCEEEEECCCCCEEEEEEC------CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 9189999489999999989------9099998899958999717999899999289998999998----------99929
Q 000346 23 QPHEAAFHPNQALIAVAIG------TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL----------EDCTI 86 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~------GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS----------~DGtI 86 (1630)
.+.+++++|||+.+++... +.+.+||..+++.+.++..+.. ..+.|+|| |+++++++ .++.|
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~-~~~a~SpD-G~~l~va~~~~~~~~~~~~~~~v 99 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-PNPVAAHS-GSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCC-CCEEECCC-CCEEEEEEECCCCCCCCCCCEEE
T ss_conf 86563018999789997342257876599998999979999957988-60798689-99899996057753212453189
Q ss_pred EEEECCCCCE-------------------EEEECCCCCE-EEEE--CCCE------------------EEEEECCCCCEE
Q ss_conf 9997899957-------------------9997689973-7863--3981------------------999994999999
Q 000346 87 RSCDFDTEQS-------------------FVLHSPEKKM-ESIS--VDTE------------------VHLALTPLQPVV 126 (1630)
Q Consensus 87 rIWDl~tgk~-------------------~i~fspdg~~-vSgs--~Dgt------------------i~I~~spdg~~I 126 (1630)
.+||..+++. .+.|+++++. .... .+.. ..+.+++++..+
T Consensus 100 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 179 (373)
T d2madh_ 100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPST 179 (373)
T ss_pred EEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 99977789388897268851368516897089985899379999869874677623687289982452069996289919
Q ss_pred -EEEECCCCEEEEEECCCCCCCCEEEEC------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC---
Q ss_conf -997428708999981369844626604------8998949999908999999996797199998578729999943---
Q 000346 127 -FFGFHRRMSVTVVGTVEGGRAPTKIKT------DLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL--- 196 (1630)
Q Consensus 127 -aSgs~Dg~tI~IwDi~sg~~~~i~il~------~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~--- 196 (1630)
++.+.|+ .+.+|+...+ ....... +.........+++++..+ ..+.++.+.+|+............
T Consensus 180 ~v~~~~dg-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 255 (373)
T d2madh_ 180 FYLLCAQG-GLAKTDHAGG--AAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred EEEECCCC-EEEEEECCCC--EEEEEEEEECCCCCCCCEEEEEEECCCCEEE-EECCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 99994799-3999974774--2667886300366753043458878994299-925896599997689907897763056
Q ss_pred CCCEE-E----CCCCCEEECCCCCEEE----------EEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCC--
Q ss_conf 88525-6----4750089829997999----------99679919999888898304999520587847999908998--
Q 000346 197 DNTIK-L----LGAGAFAFHPTLEWLF----------VGDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-- 259 (1630)
Q Consensus 197 ~~~V~-i----sGv~sIafSPDg~~La----------SGS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~-- 259 (1630)
..... . .+...+.+++++..++ +...++.+.+||..+++. +..+. +...+.++.|+|||+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~--~~~~~-~~~~~~~~a~spDG~~~ 332 (373)
T d2madh_ 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQIS-LGHDVDAISVAQDGGPD 332 (373)
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCE--EEEEC-CCCCEEEEEECCCCCEE
T ss_conf 4757866413674133577149975999548882478625898699998999969--89866-89982589999899989
Q ss_pred EEEEEECCCCEEEEEEEE
Q ss_conf 999998799548999332
Q 000346 260 LLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 260 lLaSgS~DGtIrIWDi~~ 277 (1630)
++++++.|++|++||+.+
T Consensus 333 l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 333 LYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEEEECCCCEEEEEECCC
T ss_conf 999967999299999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=2.9e-12 Score=102.58 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=119.2
Q ss_pred EECCCCCEEEEEEC------CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEE----------ECCCEEEEEE
Q ss_conf 99489999999989------90999988999589997179-9989999928999899999----------8999299997
Q 000346 28 AFHPNQALIAVAIG------TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAI----------LEDCTIRSCD 90 (1630)
Q Consensus 28 aFSPdG~lLaSgs~------GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSg----------S~DGtIrIWD 90 (1630)
+.+||++.+++... +.|.+||..+++.+.++..+ .+ .++|+|+ +++|++. +.|+.|++||
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpD-g~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCC-CCEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 6589999999982664777671999999999499999899998--5699489-999999967776420158999899999
Q ss_pred CCCCCE-------------------EEEECCCCCE-EEE--ECCCEEEEEE-----------------------------
Q ss_conf 899957-------------------9997689973-786--3398199999-----------------------------
Q 000346 91 FDTEQS-------------------FVLHSPEKKM-ESI--SVDTEVHLAL----------------------------- 119 (1630)
Q Consensus 91 l~tgk~-------------------~i~fspdg~~-vSg--s~Dgti~I~~----------------------------- 119 (1630)
..+++. .+.|+++++. ... ..+....++.
T Consensus 85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
T d2bbkh_ 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 164 (355)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEE
T ss_conf 99997988980588640311798734999338871577327988204543057883766770587404730699636999
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--EEC-
Q ss_conf 49999999974287089999813698446266048998949999908999999996797199998578729999--943-
Q 000346 120 TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYT--LQL- 196 (1630)
Q Consensus 120 spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~t--L~~- 196 (1630)
.+++..++....+...+..++.... ...+...+....+.+++..++.++.++.+++|+...+..... ...
T Consensus 165 ~~dg~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 165 CRDGSLAKVAFGTEGTPEITHTEVF-------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCC-------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred CCCCCEEEEEECCCCEEEEEECCCC-------CCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 3899989998347873799962433-------300011061021538997388746998299996589907998445784
Q ss_pred C-----CCEEECCCCCEEECCCCCEEEEEECC----------CEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCC--
Q ss_conf 8-----85256475008982999799999679----------919999888898304999520587847999908998--
Q 000346 197 D-----NTIKLLGAGAFAFHPTLEWLFVGDRR----------GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-- 259 (1630)
Q Consensus 197 ~-----~~V~isGv~sIafSPDg~~LaSGS~D----------GtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~-- 259 (1630)
. ......+...+++++++..++....+ ..|.+||..+++. +..+.. ...+.++.|+|||+
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~--~~~~~~-~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFEM-GHEIDSINVSQDEKPL 314 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEE-EEEECEEEECCSSSCE
T ss_pred CCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCE--EEEECC-CCCEEEEEECCCCCEE
T ss_conf 4126854330351089998079976788740687126517997599986788849--899668-9987799992899969
Q ss_pred EEEEEECCCCEEEEEEEE
Q ss_conf 999998799548999332
Q 000346 260 LLVTLCRDGSLQVWKTRV 277 (1630)
Q Consensus 260 lLaSgS~DGtIrIWDi~~ 277 (1630)
++++++.|+.|++||..+
T Consensus 315 l~v~~~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHDAES 332 (355)
T ss_dssp EEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCEEEEEECCC
T ss_conf 999978999899999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=2.3e-12 Score=103.35 Aligned_cols=97 Identities=10% Similarity=-0.058 Sum_probs=39.9
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCCEEEEEEC-CCCEE--
Q ss_conf 89999813698446266048998949999908999999996----------797199998578729999943-88525--
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY----------ADGLIRAYNIHTYAVHYTLQL-DNTIK-- 201 (1630)
Q Consensus 135 tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS----------~DGtIkIWDi~t~~~i~tL~~-~~~V~-- 201 (1630)
.+.+||..++ +.+..+..+.. ..++|+||++++++++ .|+.|++||..+++....+.. .....
T Consensus 29 ~v~v~D~~tg--~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~ 104 (355)
T d2bbkh_ 29 QQFVIDGEAG--RVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104 (355)
T ss_dssp EEEEEETTTT--EEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred EEEEEECCCC--CEEEEEECCCC--CCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEC
T ss_conf 1999999999--49999989999--8569948999999996777642015899989999999997988980588640311
Q ss_pred ECCCCCEEECCCCCEEEEEE--CCCEEEEEECCCCC
Q ss_conf 64750089829997999996--79919999888898
Q 000346 202 LLGAGAFAFHPTLEWLFVGD--RRGTLLAWDVSIER 235 (1630)
Q Consensus 202 isGv~sIafSPDg~~LaSGS--~DGtIkIWDl~tgk 235 (1630)
......+.|+|+++++++++ .+..+.+|+..+++
T Consensus 105 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~ 140 (355)
T d2bbkh_ 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140 (355)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred CCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCC
T ss_conf 798734999338871577327988204543057883
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.48 E-value=4.3e-11 Score=93.92 Aligned_cols=113 Identities=13% Similarity=0.010 Sum_probs=49.8
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEC-CCCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCEEEEEEC-
Q ss_conf 4999999997428708999981369844626604-89989499999089999999-96797199998578729999943-
Q 000346 120 TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKT-DLKKPIVNLACHPRLPVLYV-AYADGLIRAYNIHTYAVHYTLQL- 196 (1630)
Q Consensus 120 spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~-~H~~~ItsIafSPdg~lLaS-gS~DGtIkIWDi~t~~~i~tL~~- 196 (1630)
.+++.++++++.++ .|.+||+.++ +.+.++. .+...+.+++|+||++++++ ++.++.|++||+.+++....+..
T Consensus 5 ~~~~~~l~~~~~~~-~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPN-NLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CTTCEEEEEEETTT-EEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCEEEEECCCC-EEEEEECCCC--CEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 89996999986999-7999999999--89999994899970459997898999999789993999967567131231036
Q ss_pred CC-CEEECCCCCEEECCCCCEEEEEE------------CCCEEEEEECCCCC
Q ss_conf 88-52564750089829997999996------------79919999888898
Q 000346 197 DN-TIKLLGAGAFAFHPTLEWLFVGD------------RRGTLLAWDVSIER 235 (1630)
Q Consensus 197 ~~-~V~isGv~sIafSPDg~~LaSGS------------~DGtIkIWDl~tgk 235 (1630)
.. .........++|+|||+++++++ .+..+.+|+..+++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 133 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCE
T ss_conf 5434547741799990588889997057752156514676248998525632
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=7.5e-10 Score=84.64 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=28.8
Q ss_pred CEEEEEECCCCCE---EEEECCCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCC
Q ss_conf 9099998899958---999717999899999289998999998-999299997899
Q 000346 42 TYIIEFDTLTGSR---IASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFDT 93 (1630)
Q Consensus 42 GtI~IWDl~tg~~---i~tl~~~~~VtsIafSpd~g~lLvSgS-~DGtIrIWDl~t 93 (1630)
++|++|++.+... ++.+.+.+.+.+++|+|+ |++|++++ .|+.|++|++..
T Consensus 14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECC-CCEEEEEECCCCEEEEEEEEC
T ss_conf 9389999839997699999757998868999589-799999977899699999968
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.38 E-value=2.2e-09 Score=81.12 Aligned_cols=193 Identities=12% Similarity=-0.072 Sum_probs=88.2
Q ss_pred CCCCEEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEE----
Q ss_conf 7999899999289998999998-----9992999978999579997689973786339819999949999999974----
Q 000346 60 INSPVVRMAYSPTSGHAVVAIL-----EDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGF---- 130 (1630)
Q Consensus 60 ~~~~VtsIafSpd~g~lLvSgS-----~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs---- 130 (1630)
+.+++.+++++|+ +..++... .++.+.+||..+++..-.+... ....+.++|++..++++.
T Consensus 19 ~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~---------~~~~~a~SpDG~~l~va~~~~~ 88 (373)
T d2madh_ 19 ADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---------FLPNPVAAHSGSEFALASTSFS 88 (373)
T ss_pred CCCCCCCCCCCCC-CCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECC---------CCCCEEECCCCCEEEEEEECCC
T ss_conf 7898656301899-97899973422578765999989999799999579---------8860798689998999960577
Q ss_pred ------CCCCEEEEEECCCCCCCCEEEECCCCCCE-------EEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEE
Q ss_conf ------28708999981369844626604899894-------9999908999999996--79719999857872999994
Q 000346 131 ------HRRMSVTVVGTVEGGRAPTKIKTDLKKPI-------VNLACHPRLPVLYVAY--ADGLIRAYNIHTYAVHYTLQ 195 (1630)
Q Consensus 131 ------~Dg~tI~IwDi~sg~~~~i~il~~H~~~I-------tsIafSPdg~lLaSgS--~DGtIkIWDi~t~~~i~tL~ 195 (1630)
.++ .|.+||..++ +.......+.... ..+.|+++++.+++.. .++.+.+|+....+.....
T Consensus 89 ~~~~~~~~~-~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~- 164 (373)
T d2madh_ 89 RIAKGKRTD-YVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL- 164 (373)
T ss_pred CCCCCCCCE-EEEEEECCCC--CEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE-
T ss_conf 532124531-8999977789--388897268851368516897089985899379999869874677623687289982-
Q ss_pred CCCCEEECCCCCEEECCCCCEE-EEEECCCEEEEEECCCCCCEEEEEEECCC------CCEEEEEEECCCCEEEEEECCC
Q ss_conf 3885256475008982999799-99967991999988889830499952058------7847999908998999998799
Q 000346 196 LDNTIKLLGAGAFAFHPTLEWL-FVGDRRGTLLAWDVSIERPSMIGIIQVGS------QPITSVAWLPMLRLLVTLCRDG 268 (1630)
Q Consensus 196 ~~~~V~isGv~sIafSPDg~~L-aSGS~DGtIkIWDl~tgk~~ii~tL~gH~------~~VssIsfSPdG~lLaSgS~DG 268 (1630)
.... ++.++|+++.+ ++.+.|+.+.+|+...... ......+. .......+++++. ++..+.++
T Consensus 165 --~~~~-----~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (373)
T d2madh_ 165 --SSPT-----CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA--GAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSG 234 (373)
T ss_pred --CCCE-----EEEEECCCCCEEEEECCCCEEEEEECCCCEE--EEEEEEECCCCCCCCEEEEEEECCCCE-EEEECCCC
T ss_conf --4520-----6999628991999994799399997477426--678863003667530434588789942-99925896
Q ss_pred CEEEEEEE
Q ss_conf 54899933
Q 000346 269 SLQVWKTR 276 (1630)
Q Consensus 269 tIrIWDi~ 276 (1630)
.+.+|+..
T Consensus 235 ~v~~~~~~ 242 (373)
T d2madh_ 235 KILQADIS 242 (373)
T ss_pred EEEEEECC
T ss_conf 59999768
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.28 E-value=7.4e-10 Score=84.69 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=34.6
Q ss_pred CEEECCCCCEEEEEECC---------CEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCC--EEEEEECCCCEEEEEE
Q ss_conf 08982999799999679---------919999888898304999520587847999908998--9999987995489993
Q 000346 207 AFAFHPTLEWLFVGDRR---------GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR--LLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 207 sIafSPDg~~LaSGS~D---------GtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~--lLaSgS~DGtIrIWDi 275 (1630)
.+++++++..++....+ ..+.+||..+++. +..+.. ...+.++.|+|||+ ++++++.|+.|++||.
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCE--EEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEEC
T ss_conf 688717998799983589733405886499998999948--689558-99651799998999899999489996999989
Q ss_pred E
Q ss_conf 3
Q 000346 276 R 276 (1630)
Q Consensus 276 ~ 276 (1630)
.
T Consensus 345 ~ 345 (368)
T d1mdah_ 345 A 345 (368)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.17 E-value=1.3e-08 Score=75.35 Aligned_cols=121 Identities=8% Similarity=0.027 Sum_probs=61.2
Q ss_pred EEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCC------CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 8999948999999998990999988999589997179------9989999928999899999899929999789995799
Q 000346 25 HEAAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDIN------SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFV 98 (1630)
Q Consensus 25 ~sIaFSPdG~lLaSgs~GtI~IWDl~tg~~i~tl~~~------~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i 98 (1630)
..+.|.+++.++.. ..+.+.+||..+++....+..+ ..|.++.|+|| +++|+.++. ..++|....
T Consensus 20 ~~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD-g~~i~~~~~--~~~~~r~s~----- 90 (470)
T d2bgra1 20 YSLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYN--YVKQWRHSY----- 90 (470)
T ss_dssp CCCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT-SSEEEEEEE--EEECSSSCE-----
T ss_pred CCCEECCCCEEEEE-CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCC-CCEEEEEEC--CCCEEEECC-----
T ss_conf 57896899979997-599499998899978999701564431676540599898-897999977--710001046-----
Q ss_pred EECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 97689973786339819999949999999974287089999813698446266048998949999908999999996797
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG 178 (1630)
Q Consensus 99 ~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG 178 (1630)
.+ .+.+||+.++ . ...+..+...+..+.|+|||+.++.. .++
T Consensus 91 -----------------------~~-----------~~~l~d~~~~--~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~ 132 (470)
T d2bgra1 91 -----------------------TA-----------SYDIYDLNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNN 132 (470)
T ss_dssp -----------------------EE-----------EEEEEETTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred -----------------------CC-----------EEEEEECCCC--C-CCCCCCCCCCCCCCCCCCCCCEEEEE-ECC
T ss_conf -----------------------73-----------4999989888--5-13124687423101014676413575-146
Q ss_pred EEEEEECCCCCEEE
Q ss_conf 19999857872999
Q 000346 179 LIRAYNIHTYAVHY 192 (1630)
Q Consensus 179 tIkIWDi~t~~~i~ 192 (1630)
.+.+|+..++....
T Consensus 133 ~l~~~~~~~g~~~~ 146 (470)
T d2bgra1 133 DIYVKIEPNLPSYR 146 (470)
T ss_dssp EEEEESSTTSCCEE
T ss_pred CCEEEECCCCCEEE
T ss_conf 41379889994653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.12 E-value=4.8e-10 Score=86.08 Aligned_cols=224 Identities=8% Similarity=-0.073 Sum_probs=119.4
Q ss_pred EEEEEC-CEEEEEECCCCCEEEEECC-------------------------------CCCEEEEEEECCCCCEEEEE-EC
Q ss_conf 999989-9099998899958999717-------------------------------99989999928999899999-89
Q 000346 36 IAVAIG-TYIIEFDTLTGSRIASIDI-------------------------------NSPVVRMAYSPTSGHAVVAI-LE 82 (1630)
Q Consensus 36 LaSgs~-GtI~IWDl~tg~~i~tl~~-------------------------------~~~VtsIafSpd~g~lLvSg-S~ 82 (1630)
+++++. |.|.+|++.+++.++++.. |-......++|| |+++++. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD-Gr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD-GKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE-EEEEEEEETT
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCC-CCEEEEECCC
T ss_conf 996887774899967898079999767578987999888650478313322567556777221032688-8889997389
Q ss_pred CCEEEEEECCCCCEEEE-ECCCCCEEEEECCCEEEEEECCCCC--EEEEEECCC----------------CEEEEEECCC
Q ss_conf 99299997899957999-7689973786339819999949999--999974287----------------0899998136
Q 000346 83 DCTIRSCDFDTEQSFVL-HSPEKKMESISVDTEVHLALTPLQP--VVFFGFHRR----------------MSVTVVGTVE 143 (1630)
Q Consensus 83 DGtIrIWDl~tgk~~i~-fspdg~~vSgs~Dgti~I~~spdg~--~IaSgs~Dg----------------~tI~IwDi~s 143 (1630)
+..|.++|+++.++.-. --|.+. +...+.++++++ +++..+.+. ..+..+|..+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~-------gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t 165 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQ-------AIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET 165 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCC-------CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEECCCCC-------CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 997999988778475579567887-------8643487056998999956677544367663001455532388663755
Q ss_pred CCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEEEC
Q ss_conf 98446266048998949999908999999996797-19999857872999994388525647500898299979999967
Q 000346 144 GGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADG-LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR 222 (1630)
Q Consensus 144 g~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DG-tIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~ 222 (1630)
. ........ ......+.++|+++++++.+.+. .+..++..+......+...+.-. .+.+.|+|+++..+ .
T Consensus 166 ~--~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~-----~~~~~~dGk~~~v~-~ 236 (441)
T d1qnia2 166 M--DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER-----IAAAVKAGNFKTIG-D 236 (441)
T ss_dssp C--SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH-----HHHHHHTTCCBCCT-T
T ss_pred C--EEEEEEEC-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCC-----EEEEECCCCEEEEC-C
T ss_conf 6--06478736-99865469879999899985178731898515712178999688511-----07996699999969-9
Q ss_pred CCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEE-EEEECCCCEEEEEEEEEC
Q ss_conf 991999988889830499952058784799990899899-999879954899933203
Q 000346 223 RGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLL-VTLCRDGSLQVWKTRVII 279 (1630)
Q Consensus 223 DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lL-aSgS~DGtIrIWDi~~~~ 279 (1630)
++.+.+++..... ++..+..+.. ...+.++|||+++ +++..+++|.+||+.+..
T Consensus 237 ~~v~vvd~~~~~~--v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~ 291 (441)
T d1qnia2 237 SKVPVVDGRGESE--FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD 291 (441)
T ss_dssp CCCCEEECSSSCS--SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred CCCEEEECCCCCC--EEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHH
T ss_conf 9828998036870--6899717988-66726899987899907759938999832244
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.07 E-value=7.6e-07 Score=62.27 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=35.1
Q ss_pred CEEECCCCCEEEEEEC-CCEEEEEECCCC-CCEEEEEEE--CCCCCEEEEEEECCCCEEEEEE-CCCCEEEEEEE
Q ss_conf 0898299979999967-991999988889-830499952--0587847999908998999998-79954899933
Q 000346 207 AFAFHPTLEWLFVGDR-RGTLLAWDVSIE-RPSMIGIIQ--VGSQPITSVAWLPMLRLLVTLC-RDGSLQVWKTR 276 (1630)
Q Consensus 207 sIafSPDg~~LaSGS~-DGtIkIWDl~tg-k~~ii~tL~--gH~~~VssIsfSPdG~lLaSgS-~DGtIrIWDi~ 276 (1630)
++.|+||++++++++. ...|.+|+.... ......... ........+.|+|+++++.... .+++|.+|+..
T Consensus 149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 978889999899820799879999706887166525111127887408999889986699951589989999955
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.03 E-value=5.1e-08 Score=70.99 Aligned_cols=235 Identities=6% Similarity=-0.142 Sum_probs=102.3
Q ss_pred CEEEEECCCCCEEEEEEC--CEEEEEECCCCCEEEEEC-C-CCCEEEEEEECCCCC--EEEEEECCCE------------
Q ss_conf 189999489999999989--909999889995899971-7-999899999289998--9999989992------------
Q 000346 24 PHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASID-I-NSPVVRMAYSPTSGH--AVVAILEDCT------------ 85 (1630)
Q Consensus 24 V~sIaFSPdG~lLaSgs~--GtI~IWDl~tg~~i~tl~-~-~~~VtsIafSpd~g~--lLvSgS~DGt------------ 85 (1630)
..+..++|||++|++... ++|.++|+.++++...++ . ...+..++|+|+ ++ +++..+.+..
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spd-g~t~YV~~~~~~~v~~~~dg~~~~~~ 152 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKV-PKTNYVFCNAEFVIPQPNDGTDFSLD 152 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCS-SBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred CCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECC-CCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 22103268888899973899979999887784755795678878643487056-99899995667754436766300145
Q ss_pred -----EEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEE
Q ss_conf -----999978999579997689973786339819999949999999974287089999813698446266048998949
Q 000346 86 -----IRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIV 160 (1630)
Q Consensus 86 -----IrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~It 160 (1630)
+..+|..+.+...... . ......+.+++++.++++.+.+...+..++..+. ........ .....
T Consensus 153 ~~~~~~~~iD~~t~~v~~qI~-------v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~--~~~d~i~v-~n~p~ 221 (441)
T d1qnia2 153 NSYTMFTAIDAETMDVAWQVI-------V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMR--NDRDWVVV-FNVER 221 (441)
T ss_dssp GEEEEEEEEETTTCSEEEEEE-------E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC--SSBCEEEE-EEHHH
T ss_pred CCCCEEEEECCCCCEEEEEEE-------C-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCC--CEEEEEEE-CCCCC
T ss_conf 553238866375560647873-------6-9986546987999989998517873189851571--21789996-88511
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEE-ECCCEEEEEECCCCCC---
Q ss_conf 999908999999996797199998578729999943885256475008982999799999-6799199998888983---
Q 000346 161 NLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIERP--- 236 (1630)
Q Consensus 161 sIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSG-S~DGtIkIWDl~tgk~--- 236 (1630)
.+.+.++++++.++ .++.+.+++......+..+...+... .+.++|||++++++ ..+++|.+||+.+...
T Consensus 222 ~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgksPh-----Gv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~ 295 (441)
T d1qnia2 222 IAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKNPH-----GLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE 295 (441)
T ss_dssp HHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSSCC-----CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT
T ss_pred EEEEECCCCEEEEC-CCCCEEEECCCCCCEEEEEECCCCCC-----CCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHH
T ss_conf 07996699999969-99828998036870689971798866-----7268999878999077599389998322445752
Q ss_pred ------EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf ------0499952058784799990899899999879954899933
Q 000346 237 ------SMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 237 ------~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
.++..-....-......|.++|..+.+...|..|..|++.
T Consensus 296 ~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 296 DKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp TSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred CCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCC
T ss_conf 5688424799601455476652265785599852443168972354
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.99 E-value=1.4e-06 Score=60.22 Aligned_cols=236 Identities=9% Similarity=-0.039 Sum_probs=143.8
Q ss_pred CCCCEEEEECCCCCEEEEEEC--CEEEEEECCCCCEEEEEC-CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 999189999489999999989--909999889995899971-79998999992899989999989992999978999579
Q 000346 21 PLQPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSF 97 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~--GtI~IWDl~tg~~i~tl~-~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~ 97 (1630)
...+.+++++++|...++... +.+..++........... .......++++++ ++++++....+.+++++-.+....
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT-CCEEEEETTTEEEEECTTCSCCEE
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCC-CCEEEEEEEECEEEEEEECCCEEE
T ss_conf 6987889996999999997189988999938996689743698668408999389-988986310000355421120000
Q ss_pred EEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 99768997378633981999994999999997428708999981369844626604899894999990899999999679
Q 000346 98 VLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD 177 (1630)
Q Consensus 98 i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~D 177 (1630)
+.. ........+...+++.+.+...... .+..++.... ...............++++++++++++...+
T Consensus 92 --~~~------~~~~~p~~iavd~~g~i~v~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~ 160 (260)
T d1rwia_ 92 --LPF------DGLNYPEGLAVDTQGAVYVADRGNN-RVVKLAAGSK--TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN 160 (260)
T ss_dssp --CCC------CSCCSEEEEEECTTCCEEEEEGGGT-EEEEECTTCS--SCEECCCCSCCSCCEEEECTTCCEEEEEGGG
T ss_pred --EEE------EEEEECCCCCCCCCCEEEEECCCCC-CCCCCCCCCC--EEEEEEECCCCCCCEEEECCCCCEEEECCCC
T ss_conf --001------0000000002455320575033555-3211232222--0122320366775205454899886410256
Q ss_pred CEEEEEECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEE-ECCCCCEEEEEEE
Q ss_conf 7199998578729999943-8852564750089829997999996799199998888983049995-2058784799990
Q 000346 178 GLIRAYNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGII-QVGSQPITSVAWL 255 (1630)
Q Consensus 178 GtIkIWDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL-~gH~~~VssIsfS 255 (1630)
+.|..+|............ ..... .+++.+++.++++....+.|..++...... ..+ .........++++
T Consensus 161 ~~i~~~d~~~~~~~~~~~~~~~~p~-----gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~---~~~~~~~~~~P~~i~~d 232 (260)
T d1rwia_ 161 NRVVKLEAESNNQVVLPFTDITAPW-----GIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVD 232 (260)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEE-----EEEECTTCCEEEEETTTTEEEEECTTCSCC---EECCCCSCCCEEEEEEC
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCC-----CCEEEEEEEEEEEECCCCEEEEEECCCCEE---EEECCCCCCCEEEEEEE
T ss_conf 4332223431001222101147876-----312310001343214899899996999769---99706998981799990
Q ss_pred CCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 89989999987995489993320
Q 000346 256 PMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 256 PdG~lLaSgS~DGtIrIWDi~~~ 278 (1630)
+++.++++-..+++| +.+.+.
T Consensus 233 ~~g~l~vad~~~~rI--~~i~~~ 253 (260)
T d1rwia_ 233 SDRTVYVADRGNDRV--VKLTSL 253 (260)
T ss_dssp TTCCEEEEEGGGTEE--EEECCC
T ss_pred CCCCEEEEECCCCEE--EEEECC
T ss_conf 899999997999989--999599
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.97 E-value=4.5e-09 Score=78.83 Aligned_cols=133 Identities=8% Similarity=-0.145 Sum_probs=59.7
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCCEEEEEEC-CCCEEE-
Q ss_conf 89999813698446266048998949999908999999996----------797199998578729999943-885256-
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY----------ADGLIRAYNIHTYAVHYTLQL-DNTIKL- 202 (1630)
Q Consensus 135 tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS----------~DGtIkIWDi~t~~~i~tL~~-~~~V~i- 202 (1630)
.+.+||..++ ........+... .++|+||++.+++.+ .|+.|++||..+++....+.. ......
T Consensus 47 ~~~~~d~~~~--~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~ 122 (368)
T d1mdah_ 47 ENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred EEEEEECCCC--CEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECC
T ss_conf 1799708998--377888578777--513989998899975567640103567869999899993830643785421024
Q ss_pred -CCCCCEEECCCCCEEEEEE-CCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf -4750089829997999996-7991999988889830499952058784799990899899999879954899933
Q 000346 203 -LGAGAFAFHPTLEWLFVGD-RRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 203 -sGv~sIafSPDg~~LaSGS-~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
.....++|+|||++++++. .++.+.+||+.+++. +..+..+..... +......++..+.||.+.+|+..
T Consensus 123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECC
T ss_pred CCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCE--EEEEECCCCCEE---CCCCCCEEEEECCCCCEEEEEEC
T ss_conf 688640588789989999968998599998998938--678604675237---46998239999489988999826
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.93 E-value=2.5e-06 Score=58.46 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=133.6
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---EE
Q ss_conf 9189999489999999989-9099998899958999717999899999289998999998999299997899957---99
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQS---FV 98 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~---~i 98 (1630)
-+..++++|||+++++... ++|..|+.. ++..........+.+++|+++ ++++++...++.+..|+...... .+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCEEEECCC-CCEEEEECCCCEEEEEEECCCCCCEEEC
T ss_conf 84787799998899996889989999089-988999717998536898677-8869983289537888710111101210
Q ss_pred EECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCC--------CEEEECCCCCCEEEEEECCCCCE
Q ss_conf 9768997378633981999994999999997428708999981369844--------62660489989499999089999
Q 000346 99 LHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRA--------PTKIKTDLKKPIVNLACHPRLPV 170 (1630)
Q Consensus 99 ~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~--------~i~il~~H~~~ItsIafSPdg~l 170 (1630)
...+.... ...+.+.+++.++++.+.+. .+..++...+... ..............+.++. +.+
T Consensus 107 ~~~~~~~~-------~n~i~~~~~g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l 177 (302)
T d2p4oa1 107 LTLPDAIF-------LNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFL 177 (302)
T ss_dssp EECTTCSC-------EEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEE
T ss_pred CCCCCCCC-------CCEEEECCCCCEEEECCCCC-CCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC-CCE
T ss_conf 23578632-------21667715797875035655-4102421687303675188640143157632243201169-830
Q ss_pred EEEEECCCEEEEEECCCCCEE---EEEECCCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 999967971999985787299---99943885256475008982999799999679919999888898304999520587
Q 000346 171 LYVAYADGLIRAYNIHTYAVH---YTLQLDNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 171 LaSgS~DGtIkIWDi~t~~~i---~tL~~~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~ 247 (1630)
+++.+..+.|..++....... ..+....... .++++++|+++++...++.|..++.. ++...+........
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pd-----gia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~ 251 (302)
T d2p4oa1 178 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNID-----DFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 251 (302)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCS-----SEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCC-----CEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCC
T ss_conf 4403788769863443333234531015899875-----23787999999997489918998789-97899996378988
Q ss_pred CEEEEEE---ECCCCEEEEEECC
Q ss_conf 8479999---0899899999879
Q 000346 248 PITSVAW---LPMLRLLVTLCRD 267 (1630)
Q Consensus 248 ~VssIsf---SPdG~lLaSgS~D 267 (1630)
..++++| .+|++.|..++..
T Consensus 252 ~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 252 GSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CCEEEEECCCCCCCCEEEEECCC
T ss_conf 82489970878878989999889
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=5e-06 Score=56.16 Aligned_cols=215 Identities=11% Similarity=0.045 Sum_probs=109.3
Q ss_pred EEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEE
Q ss_conf 099998899958999717999899999289998999998999---29999789995799976899737863398199999
Q 000346 43 YIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDC---TIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLAL 119 (1630)
Q Consensus 43 tI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DG---tIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~ 119 (1630)
.|.+.|...........+...+...+|||| |+.||...... .+.+.+...+.... .+..........+
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPD-Gk~IAf~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 90 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFPRHNGAPAF 90 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEEE--------EECCSSCEEEEEE
T ss_pred EEEEECCCCCCCEEEECCCCCEEEEEECCC-CCEEEEEEEECCCCCEEEEECCCCCEEE--------EEEEECCCCCCEE
T ss_conf 999992899976798658984260388789-9989999815267513443113675067--------7642024543024
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEE-ECCC--EEEEEECCCCCEEEEEEC
Q ss_conf 4999999997428708999981369844626604899894999990899999999-6797--199998578729999943
Q 000346 120 TPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YADG--LIRAYNIHTYAVHYTLQL 196 (1630)
Q Consensus 120 spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSg-S~DG--tIkIWDi~t~~~i~tL~~ 196 (1630)
++++..++..........++...... .................+++++..+... ..++ .|...+............
T Consensus 91 spdg~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 169 (269)
T d2hqsa1 91 SPDGSKLAFALSKTGSLNLYVMDLAS-GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE 169 (269)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTT-CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS
T ss_pred CCCCCEEEEEEECCCCCCEEECCCCC-CCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECC
T ss_conf 48898646764027864100002221-22000010144211454345544330000126874386542133100010001
Q ss_pred CCCEEECCCCCEEECCCCCEEEEEECC-CEEEEE--ECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCC---CE
Q ss_conf 885256475008982999799999679-919999--888898304999520587847999908998999998799---54
Q 000346 197 DNTIKLLGAGAFAFHPTLEWLFVGDRR-GTLLAW--DVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDG---SL 270 (1630)
Q Consensus 197 ~~~V~isGv~sIafSPDg~~LaSGS~D-GtIkIW--Dl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DG---tI 270 (1630)
..... ...|+|++.+++..+.+ +...+| +...+. ...+ .+........|+|||+.|+..+..+ .+
T Consensus 170 ~~~~~-----~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~---~~~~-~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l 240 (269)
T d2hqsa1 170 GSQNQ-----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVL-SSTFLDETPSLAPNGTMVIYSSSQGMGSVL 240 (269)
T ss_dssp SSEEE-----EEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEEC-CCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CCCCC-----CCCCCCCCCEEEEEEECCCCEEEEEEECCCCC---CEEE-ECCCCCCCEEECCCCCEEEEEECCCCCCEE
T ss_conf 22223-----43223454305778605880125676035644---0585-068654455898999999999817998479
Q ss_pred EEEEEE
Q ss_conf 899933
Q 000346 271 QVWKTR 276 (1630)
Q Consensus 271 rIWDi~ 276 (1630)
++|++.
T Consensus 241 ~~~~~d 246 (269)
T d2hqsa1 241 NLVSTD 246 (269)
T ss_dssp EEEETT
T ss_pred EEEECC
T ss_conf 999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.80 E-value=1.5e-07 Score=67.53 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=90.9
Q ss_pred EEEEEECCCCCCCCEEEE-----CCCCCCEEEEEECCCCCEEEEEEC---------CCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 899998136984462660-----489989499999089999999967---------971999985787299999438852
Q 000346 135 SVTVVGTVEGGRAPTKIK-----TDLKKPIVNLACHPRLPVLYVAYA---------DGLIRAYNIHTYAVHYTLQLDNTI 200 (1630)
Q Consensus 135 tI~IwDi~sg~~~~i~il-----~~H~~~ItsIafSPdg~lLaSgS~---------DGtIkIWDi~t~~~i~tL~~~~~V 200 (1630)
.+.+||..++ .....+ ..|...|.++.|+||+++|+.++. ++.+.+||+.+++......+...+
T Consensus 37 ~~~~~~~~t~--~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~ 114 (470)
T d2bgra1 37 NILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT 114 (470)
T ss_dssp CEEEEETTTC--CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE
T ss_pred CEEEEECCCC--CEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 4999988999--78999701564431676540599898897999977710001046734999989888513124687423
Q ss_pred EECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEEC------------------CCCCEEEEEEECCCCEEE
Q ss_conf 56475008982999799999679919999888898304999520------------------587847999908998999
Q 000346 201 KLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQV------------------GSQPITSVAWLPMLRLLV 262 (1630)
Q Consensus 201 ~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~g------------------H~~~VssIsfSPdG~lLa 262 (1630)
. .+.|+|||++++... ++.+.+|+..+++. ...... .......+.|+|||+.|+
T Consensus 115 ~-----~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia 186 (470)
T d2bgra1 115 Q-----WVTWSPVGHKLAYVW-NNDIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA 186 (470)
T ss_dssp E-----EEEECSSTTCEEEEE-TTEEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred C-----CCCCCCCCCEEEEEE-CCCCEEEECCCCCE--EEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCC
T ss_conf 1-----010146764135751-46413798899946--532101477740535432011210047765307999987220
Q ss_pred EEECCCC-EEEEEEEEEC
Q ss_conf 9987995-4899933203
Q 000346 263 TLCRDGS-LQVWKTRVII 279 (1630)
Q Consensus 263 SgS~DGt-IrIWDi~~~~ 279 (1630)
....|.+ +..|.+....
T Consensus 187 ~~~~d~~~v~~~~~~~~~ 204 (470)
T d2bgra1 187 YAQFNDTEVPLIEYSFYS 204 (470)
T ss_dssp EEEEECTTCCEEEEEECC
T ss_pred EEEECCCCCCEEEEEEEC
T ss_conf 268637767069987660
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.50 E-value=4.4e-05 Score=49.16 Aligned_cols=240 Identities=10% Similarity=0.021 Sum_probs=141.8
Q ss_pred CCEEEEECCCCCEEEEEEC--------CEEEEEECCCCCEEEEECCC-----CCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 9189999489999999989--------90999988999589997179-----9989999928999899999899929999
Q 000346 23 QPHEAAFHPNQALIAVAIG--------TYIIEFDTLTGSRIASIDIN-----SPVVRMAYSPTSGHAVVAILEDCTIRSC 89 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~--------GtI~IWDl~tg~~i~tl~~~-----~~VtsIafSpd~g~lLvSgS~DGtIrIW 89 (1630)
.+-+++|+++|+++++... ++|..||..++......... +....+.|.++ ++.++++.....+..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d-g~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD-ANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS-SSEEEEEETTTEEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECC-CCEEEEEECCCEEEEE
T ss_conf 971739969999999987540234529999999899995999977765567885306999079-9989999779839999
Q ss_pred ECCCCCEEEE-ECCCCCEEEEECCCEEEEEECCCCCEEEEEECCC------------CEEEEEECCCCCCCCEEEECCCC
Q ss_conf 7899957999-7689973786339819999949999999974287------------08999981369844626604899
Q 000346 90 DFDTEQSFVL-HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR------------MSVTVVGTVEGGRAPTKIKTDLK 156 (1630)
Q Consensus 90 Dl~tgk~~i~-fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg------------~tI~IwDi~sg~~~~i~il~~H~ 156 (1630)
+.+.....+. ...++... .....+.+.+++.+.++..... ..-.+|.+.... ....... .-
T Consensus 98 ~~~g~~~~~~~~~~~g~~~----~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~-~~ 171 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRM----QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT-AF 171 (314)
T ss_dssp ETTSCEEECCSBCTTSCBC----BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE-EE
T ss_pred ECCCCEEEEEECCCCCCCC----CCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEECC-CEEEEEC-CC
T ss_conf 4777479997334324545----7872789888998999148667543201100026884389995257-4037507-85
Q ss_pred CCEEEEEECCCCC----EE-EEEECCCEEEEEECCCCCEEEE---EE---C--CCCEEECCCCCEEECCCCCEEEEEECC
Q ss_conf 8949999908999----99-9996797199998578729999---94---3--885256475008982999799999679
Q 000346 157 KPIVNLACHPRLP----VL-YVAYADGLIRAYNIHTYAVHYT---LQ---L--DNTIKLLGAGAFAFHPTLEWLFVGDRR 223 (1630)
Q Consensus 157 ~~ItsIafSPdg~----lL-aSgS~DGtIkIWDi~t~~~i~t---L~---~--~~~V~isGv~sIafSPDg~~LaSGS~D 223 (1630)
...+.++|+|+++ .| ++-+..+.|..||+.....+.. +. . ..... .+++..+|+..++....
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd-----GiavD~~GnlyVa~~~~ 246 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD-----GMDFDEDNNLLVANWGS 246 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE-----EEEEBTTCCEEEEEETT
T ss_pred CEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCE-----EEEEECCCCEEEEECCC
T ss_conf 3221369978877630379998602431177611676543015689971335666410-----25783478579998279
Q ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCC-EEEEEECCCCEEEEEEE
Q ss_conf 919999888898304999520587847999908998-99999879954899933
Q 000346 224 GTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLR-LLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 224 GtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~-lLaSgS~DGtIrIWDi~ 276 (1630)
+.|.+||...++. ...+.......++++|.++++ ++++.+.++.|...++.
T Consensus 247 g~I~~~dp~~g~~--~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 247 SHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEECCCCEE--EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 9999996999979--999979999878999928989999998789919999789
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.47 E-value=5.1e-05 Score=48.65 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=31.5
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEEECCCCC-CCCEEE--ECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCC
Q ss_conf 9999949999999974287089999813698-446266--048998949999908999999996-7971999985787
Q 000346 115 VHLALTPLQPVVFFGFHRRMSVTVVGTVEGG-RAPTKI--KTDLKKPIVNLACHPRLPVLYVAY-ADGLIRAYNIHTY 188 (1630)
Q Consensus 115 i~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~-~~~i~i--l~~H~~~ItsIafSPdg~lLaSgS-~DGtIkIWDi~t~ 188 (1630)
..+.++|++.++++++.....|.+|+..... ...... ..........++|+|+++++++.. .+++|.+|++...
T Consensus 148 h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.34 E-value=1e-04 Score=46.51 Aligned_cols=195 Identities=10% Similarity=-0.041 Sum_probs=116.3
Q ss_pred CCEEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEE
Q ss_conf 9989999928999899999-899929999789995799976899737863398199999499999999742870899998
Q 000346 62 SPVVRMAYSPTSGHAVVAI-LEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVG 140 (1630)
Q Consensus 62 ~~VtsIafSpd~g~lLvSg-S~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwD 140 (1630)
...+++++.++ |+.+++. +..+.+..++........ +...+ ......+.+.+++.+.++..... .+++++
T Consensus 14 ~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~------~~~p~gvav~~~g~i~v~d~~~~-~i~~~~ 84 (260)
T d1rwia_ 14 LSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTV-LPFNG------LYQPQGLAVDGAGTVYVTDFNNR-VVTLAA 84 (260)
T ss_dssp CCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEE-CCCCS------CCSCCCEEECTTCCEEEEETTTE-EEEECT
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEEEEECCCCCEEEE-ECCCC------CCCCEEEEECCCCCEEEEEEEEC-EEEEEE
T ss_conf 98788999699-99999971899889999389966897-43698------66840899938998898631000-035542
Q ss_pred CCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-ECCCCEEECCCCCEEECCCCCEEEE
Q ss_conf 136984462660489989499999089999999967971999985787299999-4388525647500898299979999
Q 000346 141 TVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTL-QLDNTIKLLGAGAFAFHPTLEWLFV 219 (1630)
Q Consensus 141 i~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL-~~~~~V~isGv~sIafSPDg~~LaS 219 (1630)
.... ..... .........++++++++++++-..+..+..++.......... ....... .++++++++.+++
T Consensus 85 ~~~~--~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~i~~~~~g~~~v~ 156 (260)
T d1rwia_ 85 GSNN--QTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD-----GVAVDNSGNVYVT 156 (260)
T ss_dssp TCSC--CEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCC-----EEEECTTCCEEEE
T ss_pred ECCC--EEEEE-EEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC-----EEEECCCCCEEEE
T ss_conf 1120--00000-10000000002455320575033555321123222201223203667752-----0545489988641
Q ss_pred EECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 96799199998888983049995205878479999089989999987995489993
Q 000346 220 GDRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 220 GS~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi 275 (1630)
...++.|..++...... .............+++.+++.++++....+.|..++.
T Consensus 157 ~~~~~~i~~~d~~~~~~--~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 157 DTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp EGGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred CCCCCCCCCCCCCCCEE--EEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEC
T ss_conf 02564332223431001--2221011478763123100013432148998999969
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.34 E-value=0.0001 Score=46.44 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=149.8
Q ss_pred CCCCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEECC------C-CCEEEEEEECCCCCEEEEEE-CCCEEEEEEC
Q ss_conf 999189999489999999989-9099998899958999717------9-99899999289998999998-9992999978
Q 000346 21 PLQPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASIDI------N-SPVVRMAYSPTSGHAVVAIL-EDCTIRSCDF 91 (1630)
Q Consensus 21 p~~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~~------~-~~VtsIafSpd~g~lLvSgS-~DGtIrIWDl 91 (1630)
-..++.++++++++++++-.. ..|++||.+ +..+..+.. . .....+.+..+.+..+++.. .++.|..++.
T Consensus 22 f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 22 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ECCCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 8890079994999899997998989999699-999998166578866422663000123445520000477531000002
Q ss_pred CCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEE--CCCCCCEEEEEECCCCC
Q ss_conf 9995799976899737863398199999499999999742870899998136984462660--48998949999908999
Q 000346 92 DTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIK--TDLKKPIVNLACHPRLP 169 (1630)
Q Consensus 92 ~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il--~~H~~~ItsIafSPdg~ 169 (1630)
.+.....+....- .....+...+++..+++..... .+.+++.. + .....+ ..+......+++.++++
T Consensus 101 -~g~~~~~~~~~~~------~~p~~~avd~~G~i~v~~~~~~-~~~~~~~~-g--~~~~~~g~~~~~~~~~~i~~d~~g~ 169 (279)
T d1q7fa_ 101 -YGQFVRKFGATIL------QHPRGVTVDNKGRIIVVECKVM-RVIIFDQN-G--NVLHKFGCSKHLEFPNGVVVNDKQE 169 (279)
T ss_dssp -TSCEEEEECTTTC------SCEEEEEECTTSCEEEEETTTT-EEEEECTT-S--CEEEEEECTTTCSSEEEEEECSSSE
T ss_pred -CCCCEEECCCCCC------CCCCEECCCCCCCEEEEEECCC-EEEEECCC-C--CEEECCCCCCCCCCCCEEEECCCEE
T ss_conf -5630240388864------2542000014784799963263-25676268-7--5010022001025662432012001
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEC---CCCEEECCCCCEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEEEEEECC
Q ss_conf 999996797199998578729999943---88525647500898299979999967-99199998888983049995205
Q 000346 170 VLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDR-RGTLLAWDVSIERPSMIGIIQVG 245 (1630)
Q Consensus 170 lLaSgS~DGtIkIWDi~t~~~i~tL~~---~~~V~isGv~sIafSPDg~~LaSGS~-DGtIkIWDl~tgk~~ii~tL~gH 245 (1630)
.+++....+.|++||. +++.+.++.. ..... .+++.++++++++-.. ++.|.+|+. +++ .+.++...
T Consensus 170 i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~-----giavD~~G~i~Vad~~~~~~v~~f~~-~G~--~~~~~~~~ 240 (279)
T d1q7fa_ 170 IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPI-----GVGINSNGEILIADNHNNFNLTIFTQ-DGQ--LISALESK 240 (279)
T ss_dssp EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEE-----EEEECTTCCEEEEECSSSCEEEEECT-TSC--EEEEEEES
T ss_pred EEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCC-----CCCCCCCCEEEEEECCCCCEEEEECC-CCC--EEEEEECC
T ss_conf 7862013551002304-794445301132114876-----23231478699997899808999999-999--99999688
Q ss_pred --CCCEEEEEEECCCCEEEEEECCCCEEEEEEEEE
Q ss_conf --878479999089989999987995489993320
Q 000346 246 --SQPITSVAWLPMLRLLVTLCRDGSLQVWKTRVI 278 (1630)
Q Consensus 246 --~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~~~ 278 (1630)
....+.+++.++|.++++ +.+..|++|+....
T Consensus 241 ~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 241 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 274 (279)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCCEEEEEEECCCCEEEE-ECCCEEEEEEEEEE
T ss_conf 88898837999089919999-18996999872203
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=0.0001 Score=46.36 Aligned_cols=214 Identities=12% Similarity=0.049 Sum_probs=125.3
Q ss_pred CCEEEEECCCCCEEEEEEC-CE---EEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEC-CCEEEEEE--CCCCC
Q ss_conf 9189999489999999989-90---999988999589997179998999992899989999989-99299997--89995
Q 000346 23 QPHEAAFHPNQALIAVAIG-TY---IIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-DCTIRSCD--FDTEQ 95 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-Gt---I~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~-DGtIrIWD--l~tgk 95 (1630)
.+..-+|||||+.||.... .. +.+.+..++.......+........|+|+ +..++.... ++...++. .....
T Consensus 40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEECCC-CCEEEEEEECCCCCCEEECCCCCCC
T ss_conf 426038878999899998152675134431136750677642024543024488-9864676402786410000222122
Q ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEE-CCC-CEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 79997689973786339819999949999999974-287-0899998136984462660489989499999089999999
Q 000346 96 SFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGF-HRR-MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYV 173 (1630)
Q Consensus 96 ~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs-~Dg-~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaS 173 (1630)
...... .........+...+..++..+ .++ ..|...+...+ .......+........|+|++..++.
T Consensus 119 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 119 IRQVTD--------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG---APQRITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp EEECCC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred CEEEEE--------CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCC---CCEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 000010--------1442114543455443300001268743865421331---00010001222234322345430577
Q ss_pred EECC-C--EEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEEEC---CCEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 9679-7--19999857872999994388525647500898299979999967---9919999888898304999520587
Q 000346 174 AYAD-G--LIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR---RGTLLAWDVSIERPSMIGIIQVGSQ 247 (1630)
Q Consensus 174 gS~D-G--tIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~---DGtIkIWDl~tgk~~ii~tL~gH~~ 247 (1630)
.+.+ + .+.+.+...... ..+....... ...|+|||++|+..+. ...+.++++..+. ...+.....
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~-----~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---~~~lt~~~g 258 (269)
T d2hqsa1 188 VSSNGGQQHIAKQDLATGGV-QVLSSTFLDE-----TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDG 258 (269)
T ss_dssp EEECSSCEEEEEEETTTCCE-EECCCSSSCE-----EEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSS
T ss_pred EEECCCCEEEEEEECCCCCC-EEEECCCCCC-----CEEECCCCCEEEEEECCCCCCEEEEEECCCCC---EEEEECCCC
T ss_conf 86058801256760356440-5850686544-----55898999999999817998479999999997---799857998
Q ss_pred CEEEEEEECC
Q ss_conf 8479999089
Q 000346 248 PITSVAWLPM 257 (1630)
Q Consensus 248 ~VssIsfSPd 257 (1630)
.+...+|+|-
T Consensus 259 ~~~~p~WSP~ 268 (269)
T d2hqsa1 259 QVKFPAWSPY 268 (269)
T ss_dssp EEEEEEECCC
T ss_pred CEEEEEECCC
T ss_conf 5883782898
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.15 E-value=0.00024 Score=43.69 Aligned_cols=208 Identities=17% Similarity=0.039 Sum_probs=90.1
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 89997179998999992899989999989992999978999579997689973786339819999949999999974287
Q 000346 54 RIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRR 133 (1630)
Q Consensus 54 ~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg 133 (1630)
.+..+.....+..++++++ |+++++...++.|+.|+........ + ........+.+.+++..+++...+.
T Consensus 20 v~~~~p~~~~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~~~~~-~--------~~~~~~~gla~~~dG~l~v~~~~~~ 89 (302)
T d2p4oa1 20 IITSFPVNTFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQIH-A--------TVEGKVSGLAFTSNGDLVATGWNAD 89 (302)
T ss_dssp EEEEECTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEE-E--------ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred EEEECCCCCCCCCEEECCC-CCEEEEECCCCEEEEEECCCCEEEE-E--------CCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 7888889988478779999-8899996889989999089988999-7--------1799853689867788699832895
Q ss_pred CEEEEEECCCCCCCCEEEE-CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCC-EEE----CCCC
Q ss_conf 0899998136984462660-48998949999908999999996797199998578729999943-885-256----4750
Q 000346 134 MSVTVVGTVEGGRAPTKIK-TDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL-DNT-IKL----LGAG 206 (1630)
Q Consensus 134 ~tI~IwDi~sg~~~~i~il-~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~-~~~-V~i----sGv~ 206 (1630)
.+..|+............ .........+++.++++++++.+.++.+..++............ ... ... ....
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 168 (302)
T d2p4oa1 90 -SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 168 (302)
T ss_dssp -SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred -EEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCC
T ss_conf -3788871011110121023578632216677157978750356554102421687303675188640143157632243
Q ss_pred CEEECCCCCEEEEEECCCEEEEEECCCCCCE-EEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 0898299979999967991999988889830-4999520587847999908998999998799548999
Q 000346 207 AFAFHPTLEWLFVGDRRGTLLAWDVSIERPS-MIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWK 274 (1630)
Q Consensus 207 sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~-ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWD 274 (1630)
.+.++.+ ..+++.+..+.|..++....... ....+ .+......+++.++|.++++...++.|..++
T Consensus 169 gi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~ 235 (302)
T d2p4oa1 169 GLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIA 235 (302)
T ss_dssp EEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred CCCCCCC-CEEEECCCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCEEEEECCCCCEEEEC
T ss_conf 2011698-30440378876986344333323453101-5899875237879999999974899189987
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.08 E-value=0.00033 Score=42.61 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=130.7
Q ss_pred CCEEEEECCCCCEEEEEEC-CEEEEEECCCCCEEEEEC-CCCCEEEEEEECCCCCEEEEEECC----CEEEEEECCCCCE
Q ss_conf 9189999489999999989-909999889995899971-799989999928999899999899----9299997899957
Q 000346 23 QPHEAAFHPNQALIAVAIG-TYIIEFDTLTGSRIASID-INSPVVRMAYSPTSGHAVVAILED----CTIRSCDFDTEQS 96 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~-GtI~IWDl~tg~~i~tl~-~~~~VtsIafSpd~g~lLvSgS~D----GtIrIWDl~tgk~ 96 (1630)
..-+++|.++|++.++-.. +.|..|+..++.....+. .......++++++ |+++++...+ +.+...+......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC-CCEEEEECCCCCCCEEEEEECCCCCEE
T ss_conf 7470789999999999779999999989999599999489987038999999-999999568973110499873899636
Q ss_pred EEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECC-----CCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEE
Q ss_conf 999768997378633981999994999999997428-----708999981369844626604899894999990899999
Q 000346 97 FVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHR-----RMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVL 171 (1630)
Q Consensus 97 ~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~D-----g~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lL 171 (1630)
......... ......+.+.+++.+.++.... ...+..++.... ....... .-...+.++|+|+++.|
T Consensus 120 ~~~~~~~~~-----~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~-~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 120 QDIIEDLST-----AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQ-NISVANGIALSTDEKVL 191 (319)
T ss_dssp EEEECSSSS-----CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEE-EESSEEEEEECTTSSEE
T ss_pred EEECCCCCC-----CCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCC--EEEEEEE-CCCEEEEEEECCCCCEE
T ss_conf 444267775-----558752267730653200135400257421578841663--3578861-23301000101222127
Q ss_pred EEE-ECCCEEEEEECCCC-CEEE----EEE---C-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE
Q ss_conf 999-67971999985787-2999----994---3-885256475008982999799999679919999888898304999
Q 000346 172 YVA-YADGLIRAYNIHTY-AVHY----TLQ---L-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGI 241 (1630)
Q Consensus 172 aSg-S~DGtIkIWDi~t~-~~i~----tL~---~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~t 241 (1630)
+++ +..+.|..|++... .... ... . ...-. .+++..+|++.++....+.|.+||. .++. +..
T Consensus 192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~Pd-----Gl~vD~~G~l~Va~~~~g~V~~~~p-~G~~--l~~ 263 (319)
T d2dg1a1 192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD-----SCCIDSDDNLYVAMYGQGRVLVFNK-RGYP--IGQ 263 (319)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE-----EEEEBTTCCEEEEEETTTEEEEECT-TSCE--EEE
T ss_pred EEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEE-----EEEECCCCCEEEEECCCCEEEEECC-CCCE--EEE
T ss_conf 8740468914799976998362024633331257764103-----6417389999999848998999979-9959--889
Q ss_pred EEC------CCCCEEEEEEECCCCEEEEEECC----CCEEEEEEE
Q ss_conf 520------58784799990899899999879----954899933
Q 000346 242 IQV------GSQPITSVAWLPMLRLLVTLCRD----GSLQVWKTR 276 (1630)
Q Consensus 242 L~g------H~~~VssIsfSPdG~lLaSgS~D----GtIrIWDi~ 276 (1630)
+.. +...+++++|.+++..+++.+.| +.-.+|.+.
T Consensus 264 i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 264 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 308 (319)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred EECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEEE
T ss_conf 968875778675046677807998899985787769960599992
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.00049 Score=41.38 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=52.9
Q ss_pred CEEEEEECCCCCEEEEEE---------CCCEEEEEECCCCCEEEEEEC---CCCEEECCCCCEEECCCCCEEEEEECCCE
Q ss_conf 949999908999999996---------797199998578729999943---88525647500898299979999967991
Q 000346 158 PIVNLACHPRLPVLYVAY---------ADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEWLFVGDRRGT 225 (1630)
Q Consensus 158 ~ItsIafSPdg~lLaSgS---------~DGtIkIWDi~t~~~i~tL~~---~~~V~isGv~sIafSPDg~~LaSGS~DGt 225 (1630)
.+....|+||+++++... ..+.+.++|+.++........ ...+. ...|+|||+.++... ++.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~-----~~~wSPDG~~iafv~-~~n 135 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-----YAGWGPKGQQLIFIF-ENN 135 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-----BCCBCSSTTCEEEEE-TTE
T ss_pred CCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCC-----EEEECCCCCEEEEEE-CCE
T ss_conf 53213898988869999845100476033528999856884564157667764311-----002426785699996-132
Q ss_pred EEEEECCCCCCEEEEEEE-CCC-----------------CCEEEEEEECCCCEEEEEECC-CCEEEEEEE
Q ss_conf 999988889830499952-058-----------------784799990899899999879-954899933
Q 000346 226 LLAWDVSIERPSMIGIIQ-VGS-----------------QPITSVAWLPMLRLLVTLCRD-GSLQVWKTR 276 (1630)
Q Consensus 226 IkIWDl~tgk~~ii~tL~-gH~-----------------~~VssIsfSPdG~lLaSgS~D-GtIrIWDi~ 276 (1630)
+.+.+...+.. ++... +.. ..-..+.|+|||+.|+....| ..|..+.+.
T Consensus 136 l~~~~~~~~~~--~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~ 203 (465)
T d1xfda1 136 IYYCAHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (465)
T ss_dssp EEEESSSSSCC--EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred EEEEECCCCCE--EEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEECC
T ss_conf 99995489965--897112676604436643100123036643489779898689999536666146412
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.88 E-value=0.00073 Score=40.10 Aligned_cols=202 Identities=15% Similarity=0.038 Sum_probs=112.0
Q ss_pred CCEEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 998999992899989999989-------9929999789995799976899737863398199999499999999742870
Q 000346 62 SPVVRMAYSPTSGHAVVAILE-------DCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRM 134 (1630)
Q Consensus 62 ~~VtsIafSpd~g~lLvSgS~-------DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~ 134 (1630)
...-.++|.++ |+++++... ++.|..||..++.......+..... ...-..+.+.+++..++++....
T Consensus 18 ~g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~---~g~P~Gl~~~~dg~~l~vad~~~- 92 (314)
T d1pjxa_ 18 PGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGY---GGIPAGCQCDRDANQLFVADMRL- 92 (314)
T ss_dssp TTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTE---ECCEEEEEECSSSSEEEEEETTT-
T ss_pred CCCEEEEEECC-CCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCC---CCCCEEEEEECCCCEEEEEECCC-
T ss_conf 89717399699-99999987540234529999999899995999977765567---88530699907999899997798-
Q ss_pred EEEEEECCCCCCCCEEEECCCC----CCEEEEEECCCCCEEEEEEC---------------CCEEEEEECCCCCEEEEEE
Q ss_conf 8999981369844626604899----89499999089999999967---------------9719999857872999994
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLK----KPIVNLACHPRLPVLYVAYA---------------DGLIRAYNIHTYAVHYTLQ 195 (1630)
Q Consensus 135 tI~IwDi~sg~~~~i~il~~H~----~~ItsIafSPdg~lLaSgS~---------------DGtIkIWDi~t~~~i~tL~ 195 (1630)
.+..++..... ......... ...+.+++.+++.+.++-.. +|.|..++. .++......
T Consensus 93 ~i~~~~~~g~~--~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~ 169 (314)
T d1pjxa_ 93 GLLVVQTDGTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT 169 (314)
T ss_dssp EEEEEETTSCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE
T ss_pred EEEEEECCCCE--EEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEE-CCCEEEEEC
T ss_conf 39999477747--999733432454578727898889989991486675432011000268843899952-574037507
Q ss_pred CCCCEEECCCCCEEECCCCC----EEE-EEECCCEEEEEECCCCCC-E---EEEEEEC-CCCCEEEEEEECCCCEEEEEE
Q ss_conf 38852564750089829997----999-996799199998888983-0---4999520-587847999908998999998
Q 000346 196 LDNTIKLLGAGAFAFHPTLE----WLF-VGDRRGTLLAWDVSIERP-S---MIGIIQV-GSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 196 ~~~~V~isGv~sIafSPDg~----~La-SGS~DGtIkIWDl~tgk~-~---ii~tL~g-H~~~VssIsfSPdG~lLaSgS 265 (1630)
....-+ .++|+|++. .|+ +-+..+.|..|++..... . ....+.. +......+++..+|++.++..
T Consensus 170 ~~~~pN-----Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 170 AFQFPN-----GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EESSEE-----EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred CCCEEE-----EEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEEC
T ss_conf 853221-----369978877630379998602431177611676543015689971335666410257834785799982
Q ss_pred CCCCEEEEEEE
Q ss_conf 79954899933
Q 000346 266 RDGSLQVWKTR 276 (1630)
Q Consensus 266 ~DGtIrIWDi~ 276 (1630)
..+.|.+|+..
T Consensus 245 ~~g~I~~~dp~ 255 (314)
T d1pjxa_ 245 GSSHIEVFGPD 255 (314)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEEECC
T ss_conf 79999999699
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.0019 Score=37.03 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=27.6
Q ss_pred EEECCCCCEEEEEECCEEEEEECCCCCEEEEECC---C-CCEEEEEEECCCCCEEEEEE
Q ss_conf 9994899999999899099998899958999717---9-99899999289998999998
Q 000346 27 AAFHPNQALIAVAIGTYIIEFDTLTGSRIASIDI---N-SPVVRMAYSPTSGHAVVAIL 81 (1630)
Q Consensus 27 IaFSPdG~lLaSgs~GtI~IWDl~tg~~i~tl~~---~-~~VtsIafSpd~g~lLvSgS 81 (1630)
..|.+++.++.....|.|.+||..+++....+.. . ..+....|+|| +++++...
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD-~~~vl~~~ 79 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD-REYALFSY 79 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEE
T ss_pred CEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCC-CCEEEEEE
T ss_conf 78917984899928996999987899889987276444455321389898-88699998
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.40 E-value=0.0032 Score=35.34 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=37.3
Q ss_pred ECCC--CCEEEEEECCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCCE
Q ss_conf 9489--99999998990999988999589997179998999992899989999989-9-----9299997899957
Q 000346 29 FHPN--QALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILE-D-----CTIRSCDFDTEQS 96 (1630)
Q Consensus 29 FSPd--G~lLaSgs~GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~-D-----GtIrIWDl~tgk~ 96 (1630)
.+|| |+.++....+.|.+.|+.+++..+...+.+.+...+|||| |++|+.... + ..|.+++..+++.
T Consensus 6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCEEECCC-CCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 5888799999999099689998999987997669985267798789-99899998628987722899998259952
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.40 E-value=0.0032 Score=35.30 Aligned_cols=199 Identities=9% Similarity=0.010 Sum_probs=123.8
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCC-CEEEEEE-CCCCEEEEE
Q ss_conf 99899999289998999998999299997899957999768997378633981999994999-9999974-287089999
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQ-PVVFFGF-HRRMSVTVV 139 (1630)
Q Consensus 62 ~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg-~~IaSgs-~Dg~tI~Iw 139 (1630)
...+.++++++ ++++++-..+..|++||.+ ++....|...+.. .+.......++...+. ..++... .+. .|..+
T Consensus 23 ~~P~gvavd~d-g~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~i~~~ 98 (279)
T d1q7fa_ 23 TEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-DSQLLYPNRVAVVRNSGDIIVTERSPTH-QIQIY 98 (279)
T ss_dssp SCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-TTCBSSEEEEEEETTTTEEEEEECGGGC-EEEEE
T ss_pred CCCCEEEECCC-CCEEEEECCCCEEEEEECC-CCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCEECCCCCC-CCCCC
T ss_conf 89007999499-9899997998989999699-9999981665788-6642266300012344552000047753-10000
Q ss_pred ECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC---CCCEEECCCCCEEECCCCCE
Q ss_conf 813698446266048998949999908999999996797199998578729999943---88525647500898299979
Q 000346 140 GTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQL---DNTIKLLGAGAFAFHPTLEW 216 (1630)
Q Consensus 140 Di~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~---~~~V~isGv~sIafSPDg~~ 216 (1630)
+.. +. .....-.........+++.+++.++++....+.+.+++. +++.+.++.. ..... .+++.++++.
T Consensus 99 ~~~-g~-~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~-----~i~~d~~g~i 170 (279)
T d1q7fa_ 99 NQY-GQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPN-----GVVVNDKQEI 170 (279)
T ss_dssp CTT-SC-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEE-----EEEECSSSEE
T ss_pred CCC-CC-CEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECC-CCCEEECCCCCCCCCCCC-----EEEECCCEEE
T ss_conf 025-63-024038886425420000147847999632632567626-875010022001025662-----4320120017
Q ss_pred EEEEECCCEEEEEECCCCCCEEEEEEE--CCCCCEEEEEEECCCCEEEEEECC-CCEEEEEE
Q ss_conf 999967991999988889830499952--058784799990899899999879-95489993
Q 000346 217 LFVGDRRGTLLAWDVSIERPSMIGIIQ--VGSQPITSVAWLPMLRLLVTLCRD-GSLQVWKT 275 (1630)
Q Consensus 217 LaSGS~DGtIkIWDl~tgk~~ii~tL~--gH~~~VssIsfSPdG~lLaSgS~D-GtIrIWDi 275 (1630)
+++....+.|++|+.. ++. +..+. +.......+++.++|+++++-+.+ +.|.+|+.
T Consensus 171 ~v~d~~~~~V~~~d~~-G~~--~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 171 FISDNRAHCVKVFNYE-GQY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EEEEGGGTEEEEEETT-CCE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EEEECCCCCEEEEECC-CCE--EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC
T ss_conf 8620135510023047-944--4530113211487623231478699997899808999999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.91 E-value=0.0091 Score=31.93 Aligned_cols=200 Identities=10% Similarity=0.043 Sum_probs=116.6
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECC--C-CEEEE
Q ss_conf 99899999289998999998999299997899957999768997378633981999994999999997428--7-08999
Q 000346 62 SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHR--R-MSVTV 138 (1630)
Q Consensus 62 ~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~D--g-~tI~I 138 (1630)
..+..++|.++ |+++++-...+.|+.|+.+++.....+.+. ......+.+.+++.++++...+ . ..+..
T Consensus 40 ~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-------~~~p~gla~~~dG~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 40 LQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSH-------KANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp CCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECS-------SSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred CCCEECEECCC-CCEEEEECCCCEEEEEECCCCEEEEEEECC-------CCCEEEEEECCCCCEEEEECCCCCCCEEEEE
T ss_conf 67470789999-999999779999999989999599999489-------9870389999999999995689731104998
Q ss_pred EECCCCCCCCEEEECC--CCCCEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEEEEECCCCEEECCCCCEEE
Q ss_conf 9813698446266048--9989499999089999999967------9719999857872999994388525647500898
Q 000346 139 VGTVEGGRAPTKIKTD--LKKPIVNLACHPRLPVLYVAYA------DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAF 210 (1630)
Q Consensus 139 wDi~sg~~~~i~il~~--H~~~ItsIafSPdg~lLaSgS~------DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIaf 210 (1630)
.+.... ........ -......+.+.+++++.++... .+.+..++............-...+ .++|
T Consensus 112 ~~~~~~--~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pn-----Gia~ 184 (319)
T d2dg1a1 112 ATENGD--NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN-----GIAL 184 (319)
T ss_dssp ECTTSC--SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEE-----EEEE
T ss_pred ECCCCC--EEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEE-----EEEE
T ss_conf 738996--364442677755587522677306532001354002574215788416633578861233010-----0010
Q ss_pred CCCCCEEEEE-ECCCEEEEEECCCCCCEE--E-EE---EECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
Q ss_conf 2999799999-679919999888898304--9-99---52058784799990899899999879954899933
Q 000346 211 HPTLEWLFVG-DRRGTLLAWDVSIERPSM--I-GI---IQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKTR 276 (1630)
Q Consensus 211 SPDg~~LaSG-S~DGtIkIWDl~tgk~~i--i-~t---L~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi~ 276 (1630)
+|+++.|+.+ +..+.|..|++....... . .. ..........+++..+|++.++....+.|.+|+-.
T Consensus 185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCC
T ss_conf 1222127874046891479997699836202463333125776410364173899999998489989999799
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.52 E-value=0.017 Score=29.95 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=131.6
Q ss_pred EEEEECCCCCEEEEEE-C-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC
Q ss_conf 8999948999999998-9-9099998899958999717999899999289998999998999299997899957999768
Q 000346 25 HEAAFHPNQALIAVAI-G-TYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSP 102 (1630)
Q Consensus 25 ~sIaFSPdG~lLaSgs-~-GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fsp 102 (1630)
-+..|++....|.-.. . +.|..||..+++. ..+.....+.++.+.++ +.++++ +.+ .+..+|..+++......+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~d-g~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISD-SKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEET-TEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEE-EEEECCCCCEEEEEECC-CCEEEE-EEC-CCEEEECCCCEEEEEEEE
T ss_conf 58759899999999987899999998998959-99989998179899659-988999-737-638950464513578664
Q ss_pred CCCE-EEEECCCEEEEEECCCCCEEEEEECCC---CEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEE-ECC
Q ss_conf 9973-786339819999949999999974287---08999981369844626604899894999990899999999-679
Q 000346 103 EKKM-ESISVDTEVHLALTPLQPVVFFGFHRR---MSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YAD 177 (1630)
Q Consensus 103 dg~~-vSgs~Dgti~I~~spdg~~IaSgs~Dg---~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSg-S~D 177 (1630)
.... .. ....+...+++.+.++..... ..-.+|....+ ........ -.....++|+++++.++.+ +..
T Consensus 97 ~~~~~~~----~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g--~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 97 ESDLPGN----RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG--KVTKLFAD-ISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp STTCTTE----EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT--EEEEEEEE-ESSEEEEEECTTSCEEEEEETTT
T ss_pred ECCCCCC----CCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCC--CEEEEEEC-CCCCCEEEECCCCCEEEEEECCC
T ss_conf 0478766----10135797999998874264313333057662299--68998650-68764024658776689851566
Q ss_pred CEEEEEECCCC------CE-EE-EEEC-CCCEEECCCCCEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCC
Q ss_conf 71999985787------29-99-9943-8852564750089829997999996799199998888983049995205878
Q 000346 178 GLIRAYNIHTY------AV-HY-TLQL-DNTIKLLGAGAFAFHPTLEWLFVGDRRGTLLAWDVSIERPSMIGIIQVGSQP 248 (1630)
Q Consensus 178 GtIkIWDi~t~------~~-i~-tL~~-~~~V~isGv~sIafSPDg~~LaSGS~DGtIkIWDl~tgk~~ii~tL~gH~~~ 248 (1630)
+.|..+++... .. .. .+.. ..... .+++..+|++.++....+.|..||.. ++. +..+......
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pd-----G~~vD~~GnlWva~~~~g~V~~~dp~-G~~--~~~i~lP~~~ 241 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMD-----GSVCDAEGHIWNARWGEGAVDRYDTD-GNH--IARYEVPGKQ 241 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEE-----EEEECTTSCEEEEEETTTEEEEECTT-CCE--EEEEECSCSB
T ss_pred CEEEEEEECCCCCCCCCCEEEEECCCCCCCCCC-----CEEECCCCCEEEEEECCCCEEEECCC-CCE--EEEECCCCCC
T ss_conf 324676453555532453578841675556663-----26786999989532078846885699-928--6686389985
Q ss_pred EEEEEEE-CCCCEE-EEEEC
Q ss_conf 4799990-899899-99987
Q 000346 249 ITSVAWL-PMLRLL-VTLCR 266 (1630)
Q Consensus 249 VssIsfS-PdG~lL-aSgS~ 266 (1630)
+++++|- ++.+.| +|...
T Consensus 242 ~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 242 TTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEEEEESTTSCEEEEEEBC
T ss_pred EEEEEEECCCCCEEEEEECC
T ss_conf 27989828999999999787
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.90 E-value=0.068 Score=25.40 Aligned_cols=223 Identities=10% Similarity=-0.007 Sum_probs=97.6
Q ss_pred CCEEEEEECCEEEEEECCCCCE-----EEEEC-CCCCEEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCC
Q ss_conf 9999999899099998899958-----99971-799989999928999899999-8999299997899957999768997
Q 000346 33 QALIAVAIGTYIIEFDTLTGSR-----IASID-INSPVVRMAYSPTSGHAVVAI-LEDCTIRSCDFDTEQSFVLHSPEKK 105 (1630)
Q Consensus 33 G~lLaSgs~GtI~IWDl~tg~~-----i~tl~-~~~~VtsIafSpd~g~lLvSg-S~DGtIrIWDl~tgk~~i~fspdg~ 105 (1630)
|.+|+.+..+.|+-.+++.... ...+. +...+.+++|... .+.+... ..++.|+..+++...........
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~-~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~-- 77 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIRQD-- 77 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCCEEEECTT--
T ss_pred CCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEC-CCEEEEEECCCCEEEEEECCCCCCEEEEEEC--
T ss_conf 9899994898299997888665544531001268775799999858-9999999899991999976658728988701--
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECC-CE--EEE
Q ss_conf 378633981999994999999997428708999981369844626604899894999990899999999679-71--999
Q 000346 106 MESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYAD-GL--IRA 182 (1630)
Q Consensus 106 ~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~D-Gt--IkI 182 (1630)
......++....+..++........|...+.... .+..........+..++++|...+++..... +. |..
T Consensus 78 -----~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~--~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r 150 (263)
T d1npea_ 78 -----LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT--QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (263)
T ss_dssp -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred -----CCCCCEEEEECCCCEEEEECCCCCEEEEEECCCC--EEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEE
T ss_conf -----2642079996368868884267897998805881--677771256668727999256692799534899768999
Q ss_pred EECCCCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEE-ECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 98578729999943-885256475008982999799999-6799199998888983049995205878479999089989
Q 000346 183 YNIHTYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRL 260 (1630)
Q Consensus 183 WDi~t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSG-S~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~l 260 (1630)
.++........... -.... .+++.+....|+.+ ...+.|...++..... ...+.+ .....++++. ++.+
T Consensus 151 ~~~dG~~~~~i~~~~~~~P~-----glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~--~~v~~~-~~~P~~lav~-~~~l 221 (263)
T d1npea_ 151 SHMDGTNRRILAQDNLGLPN-----GLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--RKVLEG-LQYPFAVTSY-GKNL 221 (263)
T ss_dssp EETTSCCCEEEECTTCSCEE-----EEEEETTTTEEEEEETTTTEEEEEETTEEEE--EEEEEC-CCSEEEEEEE-TTEE
T ss_pred ECCCCCCCEEEEEECCCCCC-----EEEEEECCCEEEEEECCCCEEEEEECCCCCE--EEEECC-CCCCEEEEEE-CCEE
T ss_conf 66789972365530355553-----0799504758999928999999999999976--999889-9986899999-9999
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 99998799548999
Q 000346 261 LVTLCRDGSLQVWK 274 (1630)
Q Consensus 261 LaSgS~DGtIrIWD 274 (1630)
..+-...+.|...+
T Consensus 222 Ywtd~~~~~I~~~~ 235 (263)
T d1npea_ 222 YYTDWKTNSVIAMD 235 (263)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEE
T ss_conf 99999999799998
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.89 E-value=0.069 Score=25.39 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=49.2
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCC
Q ss_conf 89999813698446266048998949999908999999996797199998578729999943885256475008982999
Q 000346 135 SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTL 214 (1630)
Q Consensus 135 tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS~DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg 214 (1630)
.+.+.|+.... ...+... ..-+.-.||..+.++.-+ ..++.++|+++...+..+.....|. .-.|-.+.
T Consensus 46 ~VvIidl~n~~-~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~Vv-----fWkWis~~ 114 (327)
T d1utca2 46 QVVIIDMNDPS-NPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT-----FWKWISLN 114 (327)
T ss_dssp EEEEEETTSTT-SCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCC-----EEEESSSS
T ss_pred EEEEEECCCCC-CCEECCC----CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECCCCCE-----EEEECCCC
T ss_conf 39999889987-6331443----616653088875799962-8868998446822111587688857-----99944798
Q ss_pred CEEEEEECCCEEEEEECCCC-CCEEEEEEECCC----CCEEEEEEECCCCEEEE
Q ss_conf 79999967991999988889-830499952058----78479999089989999
Q 000346 215 EWLFVGDRRGTLLAWDVSIE-RPSMIGIIQVGS----QPITSVAWLPMLRLLVT 263 (1630)
Q Consensus 215 ~~LaSGS~DGtIkIWDl~tg-k~~ii~tL~gH~----~~VssIsfSPdG~lLaS 263 (1630)
. |+.-+ +..|+-|++... .+ ...+..|. ..|..-..+++.++++.
T Consensus 115 ~-L~lVT-~taVYHW~~~g~s~P--~k~fdR~~~L~~~QIInY~~d~~~kW~~l 164 (327)
T d1utca2 115 T-VALVT-DNAVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLL 164 (327)
T ss_dssp E-EEEEC-SSEEEEEESSSSCCC--EEEEECCGGGTTCEEEEEEECTTSCEEEE
T ss_pred E-EEEEC-CCCEEEECCCCCCCC--HHHHHHCCCCCCCEEEEEEECCCCCEEEE
T ss_conf 8-99991-881699735699985--26623210124863899898999988999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.88 E-value=0.069 Score=25.37 Aligned_cols=192 Identities=11% Similarity=0.022 Sum_probs=98.6
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 99999289998999998999299997899957999768997378633981999994999999997428708999981369
Q 000346 65 VRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVLHSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEG 144 (1630)
Q Consensus 65 tsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg 144 (1630)
-+..|++.++.++.+--..+.|..||..+++..+.-.+. ....+....++.+++ ++.+ .+..+|..++
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~---------~~~~i~~~~dg~l~v-a~~~--gl~~~d~~tg 88 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPF---------MGSALAKISDSKQLI-ASDD--GLFLRDTATG 88 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS---------CEEEEEEEETTEEEE-EETT--EEEEEETTTC
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEEEEECCC---------CCEEEEEECCCCEEE-EEEC--CCEEEECCCC
T ss_conf 587598999999999878999999989989599998999---------817989965998899-9737--6389504645
Q ss_pred CCCCEEEEC--CC--CCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCE
Q ss_conf 844626604--89--989499999089999999967----9719999857872999994388525647500898299979
Q 000346 145 GRAPTKIKT--DL--KKPIVNLACHPRLPVLYVAYA----DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEW 216 (1630)
Q Consensus 145 ~~~~i~il~--~H--~~~ItsIafSPdg~lLaSgS~----DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~ 216 (1630)
. ...... .. ...+..+.+.|++++.++... .+.-.+|.+..++.......-..-+ .+.|+++++.
T Consensus 89 ~--~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~N-----g~~~s~d~~~ 161 (295)
T d2ghsa1 89 V--LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPN-----SICFSPDGTT 161 (295)
T ss_dssp C--EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEE-----EEEECTTSCE
T ss_pred E--EEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCC-----EEEECCCCCE
T ss_conf 1--35786640478766101357979999988742643133330576622996899865068764-----0246587766
Q ss_pred EEEE-ECCCEEEEEECCCC------CCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
Q ss_conf 9999-67991999988889------83049995205878479999089989999987995489993
Q 000346 217 LFVG-DRRGTLLAWDVSIE------RPSMIGIIQVGSQPITSVAWLPMLRLLVTLCRDGSLQVWKT 275 (1630)
Q Consensus 217 LaSG-S~DGtIkIWDl~tg------k~~ii~tL~gH~~~VssIsfSPdG~lLaSgS~DGtIrIWDi 275 (1630)
++.+ +..+.|..+++... +........+.......+++..+|++.++.-..+.|..|+.
T Consensus 162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 227 (295)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC
T ss_conf 898515663246764535555324535788416755566632678699998953207884688569
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.45 E-value=0.087 Score=24.64 Aligned_cols=28 Identities=11% Similarity=0.028 Sum_probs=11.9
Q ss_pred EEEEEEECCCCEEEEEE-CCCCEEEEEEE
Q ss_conf 47999908998999998-79954899933
Q 000346 249 ITSVAWLPMLRLLVTLC-RDGSLQVWKTR 276 (1630)
Q Consensus 249 VssIsfSPdG~lLaSgS-~DGtIrIWDi~ 276 (1630)
...+..+|||+++++++ .+.++.|.|++
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred CCCEEECCCCCEEEEECCCCCCEEEEEEH
T ss_conf 77338899997899938858957999822
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.21 E-value=0.096 Score=24.30 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=50.4
Q ss_pred ECCC--CCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEEEC-CC-----EEEEEECCCCC
Q ss_conf 9089--9999999679719999857872999994388525647500898299979999967-99-----19999888898
Q 000346 164 CHPR--LPVLYVAYADGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVGDR-RG-----TLLAWDVSIER 235 (1630)
Q Consensus 164 fSPd--g~lLaSgS~DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSGS~-DG-----tIkIWDl~tgk 235 (1630)
.+|+ |+.++..+ ++.|.+.|+..++......+..... ...|||||++|+.... ++ .+.+++...++
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~-----~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVIN-----NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEE-----EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCCCCCCCEEEEEE-CCCEEEEECCCCCEEEEECCCCCCC-----CEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 58887999999990-9968999899998799766998526-----77987899989999862898772289999825995
Q ss_pred CEEEEEEEC-------CCCCEEEEEEECCCCEEEEEE
Q ss_conf 304999520-------587847999908998999998
Q 000346 236 PSMIGIIQV-------GSQPITSVAWLPMLRLLVTLC 265 (1630)
Q Consensus 236 ~~ii~tL~g-------H~~~VssIsfSPdG~lLaSgS 265 (1630)
. ..+.. .........|+|+++.++...
T Consensus 80 ~---~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 80 I---KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp E---EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred E---EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 2---886416887547644434310279887799997
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.13 Score=23.30 Aligned_cols=225 Identities=10% Similarity=-0.021 Sum_probs=126.3
Q ss_pred CEEEEEECCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCE----EEEECCCCCEEE
Q ss_conf 999999899099998899958999717999899999289998999998-999299997899957----999768997378
Q 000346 34 ALIAVAIGTYIIEFDTLTGSRIASIDINSPVVRMAYSPTSGHAVVAIL-EDCTIRSCDFDTEQS----FVLHSPEKKMES 108 (1630)
Q Consensus 34 ~lLaSgs~GtI~IWDl~tg~~i~tl~~~~~VtsIafSpd~g~lLvSgS-~DGtIrIWDl~tgk~----~i~fspdg~~vS 108 (1630)
.+|+.+....|+..++.+......+.....+.++.|+.. .+.+.-.. .++.|...+++.... .....
T Consensus 2 ~fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~-~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~------- 73 (266)
T d1ijqa1 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------- 73 (266)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEEC-------
T ss_pred CEEEEECCCEEEEEECCCCCCEEEECCCCCEEEEEEEEC-CCEEEEEECCCCEEEEEEECCCCCCCCEEEEEE-------
T ss_conf 799997877189998999852664179985599999808-999999999799799999357888761489984-------
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEE--CCCEEEEEECC
Q ss_conf 6339819999949999999974287089999813698446266048998949999908999999996--79719999857
Q 000346 109 ISVDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAY--ADGLIRAYNIH 186 (1630)
Q Consensus 109 gs~Dgti~I~~spdg~~IaSgs~Dg~tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSgS--~DGtIkIWDi~ 186 (1630)
........++....+..++........|.+.++... ...............++++|...+++... ..+.|...++.
T Consensus 74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~--~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d 151 (266)
T d1ijqa1 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (266)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS--SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCC--EEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCC
T ss_conf 899985468986426528999548999985764895--378887279988336999800394887126997302686368
Q ss_pred CCCEEEEEEC-CCCEEECCCCCEEECCCCCEEEEE-ECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEE
Q ss_conf 8729999943-885256475008982999799999-67991999988889830499952058784799990899899999
Q 000346 187 TYAVHYTLQL-DNTIKLLGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIERPSMIGIIQVGSQPITSVAWLPMLRLLVTL 264 (1630)
Q Consensus 187 t~~~i~tL~~-~~~V~isGv~sIafSPDg~~LaSG-S~DGtIkIWDl~tgk~~ii~tL~gH~~~VssIsfSPdG~lLaSg 264 (1630)
.......... -...+ .+++.+.+..|+.+ ...+.|...++.......+...........++++.. +.++.+-
T Consensus 152 Gs~~~~l~~~~~~~p~-----gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td 225 (266)
T d1ijqa1 152 GVDIYSLVTENIQWPN-----GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTD 225 (266)
T ss_dssp SCCEEEEECSSCSCEE-----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEE
T ss_pred CCCEECCCCCCCCEEE-----EEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEC-CEEEEEE
T ss_conf 8834412004532016-----998613356999952896799999899997799993898556647999989-9999998
Q ss_pred ECCCCEEEEE
Q ss_conf 8799548999
Q 000346 265 CRDGSLQVWK 274 (1630)
Q Consensus 265 S~DGtIrIWD 274 (1630)
..++.|...+
T Consensus 226 ~~~~~I~~~~ 235 (266)
T d1ijqa1 226 IINEAIFSAN 235 (266)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 9999699999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.22 E-value=0.14 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=10.4
Q ss_pred EECCCCCEEEEEECC-CEEEEEECCCC
Q ss_conf 982999799999679-91999988889
Q 000346 209 AFHPTLEWLFVGDRR-GTLLAWDVSIE 234 (1630)
Q Consensus 209 afSPDg~~LaSGS~D-GtIkIWDl~tg 234 (1630)
.+.+++.+++.|+.+ ..+.+||..+.
T Consensus 82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 82 SMDGNGQIVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp EECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred EEECCCCEEEEECCCCCCEEEECCCCC
T ss_conf 994688689863688862167567557
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.92 E-value=0.51 Score=18.89 Aligned_cols=216 Identities=11% Similarity=-0.026 Sum_probs=117.7
Q ss_pred CCEEEEECCCCCEEEEEEC--CEEEEEECCCCCEEEEECCC-CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 9189999489999999989--90999988999589997179-99899999289998999998999299997899957999
Q 000346 23 QPHEAAFHPNQALIAVAIG--TYIIEFDTLTGSRIASIDIN-SPVVRMAYSPTSGHAVVAILEDCTIRSCDFDTEQSFVL 99 (1630)
Q Consensus 23 ~V~sIaFSPdG~lLaSgs~--GtI~IWDl~tg~~i~tl~~~-~~VtsIafSpd~g~lLvSgS~DGtIrIWDl~tgk~~i~ 99 (1630)
.+.+++|++..+.++.+.. +.|...++........+... ..+.++++..-++++.++-...+.|.+.+++...+...
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 57999998589999999899991999976658728988701264207999636886888426789799880588167777
Q ss_pred ECCCCCEEEEECCCEEEEEECCCCCEEEEEECCCC--EEEEEECCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEE-EC
Q ss_conf 76899737863398199999499999999742870--8999981369844626604899894999990899999999-67
Q 000346 100 HSPEKKMESISVDTEVHLALTPLQPVVFFGFHRRM--SVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVA-YA 176 (1630)
Q Consensus 100 fspdg~~vSgs~Dgti~I~~spdg~~IaSgs~Dg~--tI~IwDi~sg~~~~i~il~~H~~~ItsIafSPdg~lLaSg-S~ 176 (1630)
.... ......+...|....++....... .|...++... .........-.....+++++.+..|+.+ ..
T Consensus 117 ~~~~-------l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~--~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~ 187 (263)
T d1npea_ 117 FDTG-------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (263)
T ss_dssp ECSS-------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred ECCC-------CCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCC--CCEEEEEECCCCCCEEEEEECCCEEEEEECC
T ss_conf 1256-------668727999256692799534899768999667899--7236553035555307995047589999289
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCCEEEEE-ECCCEEEEEECCCCCCEEEEEEE-CCCCCEEEEEE
Q ss_conf 97199998578729999943885256475008982999799999-67991999988889830499952-05878479999
Q 000346 177 DGLIRAYNIHTYAVHYTLQLDNTIKLLGAGAFAFHPTLEWLFVG-DRRGTLLAWDVSIERPSMIGIIQ-VGSQPITSVAW 254 (1630)
Q Consensus 177 DGtIkIWDi~t~~~i~tL~~~~~V~isGv~sIafSPDg~~LaSG-S~DGtIkIWDl~tgk~~ii~tL~-gH~~~VssIsf 254 (1630)
.+.|...++........+.+..... .+++. +.+|+.. ...+.|...|..+++. ..++. ........+..
T Consensus 188 ~~~I~~~~~~g~~~~~v~~~~~~P~-----~lav~--~~~lYwtd~~~~~I~~~~~~~g~~--~~~~~~~~~~~~~gi~v 258 (263)
T d1npea_ 188 THRAECLNPAQPGRRKVLEGLQYPF-----AVTSY--GKNLYYTDWKTNSVIAMDLAISKE--MDTFHPHKQTRLYGITI 258 (263)
T ss_dssp TTEEEEEETTEEEEEEEEECCCSEE-----EEEEE--TTEEEEEETTTTEEEEEETTTTEE--EEEECCSSCCCCCCEEE
T ss_pred CCEEEEEECCCCCEEEEECCCCCCE-----EEEEE--CCEEEEEECCCCEEEEEECCCCCC--CEEECCCCCCCCCEEEE
T ss_conf 9999999999997699988999868-----99999--999999999999799998989951--06989888998565898
Q ss_pred EC
Q ss_conf 08
Q 000346 255 LP 256 (1630)
Q Consensus 255 SP 256 (1630)
.+
T Consensus 259 ~~ 260 (263)
T d1npea_ 259 AL 260 (263)
T ss_dssp EC
T ss_pred EC
T ss_conf 38
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.75 E-value=0.63 Score=18.21 Aligned_cols=17 Identities=6% Similarity=-0.291 Sum_probs=6.3
Q ss_pred CEEEEECCCCCEEEEEE
Q ss_conf 18999948999999998
Q 000346 24 PHEAAFHPNQALIAVAI 40 (1630)
Q Consensus 24 V~sIaFSPdG~lLaSgs 40 (1630)
+.+++|++.+..++-..
T Consensus 32 ~~~id~d~~~~~lYw~D 48 (266)
T d1ijqa1 32 VVALDTEVASNRIYWSD 48 (266)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEEEECCCEEEEEE
T ss_conf 59999980899999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.74 E-value=0.81 Score=17.43 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 999998772199479999999999988326----6315889999999999999981299999851037997102205899
Q 000346 1419 FKTGLAHLEQNQLPDALSCFDEAFLALAKD----HSRGADVKAQATICAQYKIAVTLLQEILRLQKVQGPSAAISAKDEM 1494 (1630)
Q Consensus 1419 lk~g~~~~~~gkf~ea~~~F~~il~~~v~~----~~e~~e~~~~i~ic~eY~~a~~ll~El~r~~~~~~~~~~~~~~~R~ 1494 (1630)
...|-.+|..|+|.+|+..|+.+|...-.. ..+......+...+...+-.+-+ .+.+-. ..+..-++.
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~--k~~~~~------~A~~~~~~a 88 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL--KLQAFS------AAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH--HTTCHH------HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHH--HHHHCC------CCCCHHHHH
T ss_conf 999999999699999999999998875101000357776406467999999999988--642110------110000000
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999861699995467999999999999970059999999999980399
Q 000346 1495 ARLSRHLGSLPLQTKHRINCIRTAIKRNMEVQNYAYAKQMLELLLSKAP 1543 (1630)
Q Consensus 1495 ~ELaayft~~~Lq~~H~~l~Lr~Am~~~~K~kN~~tAa~fa~rLl~~~p 1543 (1630)
++ +.|.+...-.+.| ...++.++|.-|....++.+++.|
T Consensus 89 l~---------~~p~~~~a~~~~g-~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 89 LE---------LDSNNEKGLSRRG-EAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HH---------HCTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HH---------CCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 10---------0223103467779-999872229999999999997298
|