Citrus Sinensis ID: 000369
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1610 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.987 | 0.803 | 0.779 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.983 | 0.793 | 0.731 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.864 | 0.685 | 0.306 | 1e-176 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.870 | 0.689 | 0.298 | 1e-171 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.604 | 0.483 | 0.265 | 1e-95 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.312 | 0.621 | 0.281 | 7e-47 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.290 | 0.529 | 0.252 | 2e-31 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.399 | 0.724 | 0.251 | 7e-30 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.137 | 0.156 | 0.288 | 2e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.181 | 0.246 | 0.226 | 0.0003 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2512 bits (6511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1251/1604 (77%), Positives = 1404/1604 (87%), Gaps = 14/1604 (0%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKIL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKIL 1599
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
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Score = 2338 bits (6060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1180/1614 (73%), Positives = 1386/1614 (85%), Gaps = 30/1614 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKIL
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKIL 1603
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust.
Identities = 463/1511 (30%), Positives = 761/1511 (50%), Gaps = 119/1511 (7%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + ++++E+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K +
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLI 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELI 250
+E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 188 AVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVN 476
Query: 483 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF---VRKSAA 539
+ +D ++ +K+ E S +V+ G + A + F ++AA
Sbjct: 477 PFLADVDKLKLDKIKE-------------CSEKVELIHGKKAGLAADKKEFKPLPGRTAA 523
Query: 540 SMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDV 584
S +G + P+ APA+K GGP K A G+G T K E E V
Sbjct: 524 SGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIV 583
Query: 585 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
EP E+S+E E + +++P + L S+ WKERL + ++ VE + + + LVR
Sbjct: 584 EP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVR 642
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMK 704
++ PGW E N QV Q + ++ +A F K + L G+ +++ D+K +A +
Sbjct: 643 MLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKE 701
Query: 705 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764
+T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I K
Sbjct: 702 AMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK 761
Query: 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824
T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +G P
Sbjct: 762 -TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEK--MQGQSPP 818
Query: 825 KKTVRASESTSSVSSGGSDG-------------LPREDISGKFTPTLVKSLESPDWKVRL 871
T S+ ++S + G DG LPR +IS K T LV + +WK+R
Sbjct: 819 APTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRK 878
Query: 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931
E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP ++
Sbjct: 879 EGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIK 936
Query: 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991
+ K + I+ LGD+K ++R L ++AW + + + + K R+
Sbjct: 937 QHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQ 996
Query: 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+L WL+++L L P L P + + D++ DVRK A+ + + G E + K
Sbjct: 997 ELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAK 1056
Query: 1051 ---NLKDIQGPALALILERIKLN-----------------GASQVSMGPTSK------SS 1084
LK + +LE+ K+N G++ P S SS
Sbjct: 1057 ATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSAPAKFQPASAPAEDCISS 1116
Query: 1085 SKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER 1144
S PK G +SS+ +G + S S+++ +S + V + KE R +
Sbjct: 1117 STEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMK 1173
Query: 1145 ----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200
+ V ++ F PR E I++L+ M + L + +DF+ L ++ L S
Sbjct: 1174 DEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLES 1233
Query: 1201 IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPC 1260
++ +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P
Sbjct: 1234 EKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPY 1293
Query: 1261 LVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLID 1320
LV K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G L++
Sbjct: 1294 LVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVE 1353
Query: 1321 HHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQK 1378
+G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++
Sbjct: 1354 SYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDM 1413
Query: 1379 SMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQS 1428
SML++R K + K+ E KP A+ LR+ E+ S Q+ +S
Sbjct: 1414 SMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGPAEDMSSKLNQARSMSGH 1473
Query: 1429 VSGPTLMRRNY 1439
++RR +
Sbjct: 1474 PEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 603 bits (1555), Expect = e-171, Method: Compositional matrix adjust.
Identities = 448/1501 (29%), Positives = 754/1501 (50%), Gaps = 99/1501 (6%)
Query: 13 KLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKA 72
KLP + + HK WK R + + I D K + L KK V DSNA VQ K
Sbjct: 9 KLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKG 68
Query: 73 LDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLD 131
L+A + Y++ A AG+ EV + +K + K E + +++VE+E + +
Sbjct: 69 LEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQE 127
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGL 191
+ K + NK K +V I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K
Sbjct: 128 ELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLF 187
Query: 192 TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELI 250
+E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 188 AIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQ 245
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ +
Sbjct: 246 QSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVE 304
Query: 311 KLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369
L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F + ++P
Sbjct: 305 VLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVP 364
Query: 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT- 428
+LEK KEKKP V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 365 TILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIAR 422
Query: 429 ---FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482
C ++ ++LK P C ++ +ND PEVRDAAF L K VG + +
Sbjct: 423 SFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVN 476
Query: 483 RSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK 536
+ +D ++ +++ E ++ G +AT ++ +P A+ + K
Sbjct: 477 PFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK------PLPGRAAASGAAGDK 530
Query: 537 SAASMLSGKRP--VSAAPASKKGGPVK----PSAKKDGSGKQETSKLTEAPEDVEPSEMS 590
+SG +P + P +K GGP K + S + K E E VEP E+S
Sbjct: 531 DTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELS 588
Query: 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLP 650
+E E + +++P + L S+ WKERL + ++ VE ++ + + LV+++ P
Sbjct: 589 IEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKP 648
Query: 651 GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFS 710
GW E N QV Q + ++ +A F K + L G+ +++ D+K +A + +T +
Sbjct: 649 GWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIA 707
Query: 711 EAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS 770
EA + E++ + KNPK SE + W+ +A+++FG S L +K I K T L +
Sbjct: 708 EACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAA 766
Query: 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830
+ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K + P + + A
Sbjct: 767 TNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGI-A 825
Query: 831 SESTSSVSSGGS------------DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 878
STS+ G D LPR +IS K T LV + +WK+R E ++ V
Sbjct: 826 KHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVA 885
Query: 879 KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938
I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG + + K +
Sbjct: 886 GIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLG 943
Query: 939 SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLS 998
++ LGD+K ++R L ++AW + + + + K R++L WL+
Sbjct: 944 IPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLA 1003
Query: 999 KQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKD 1054
++L L P L P + + D++ DVRK A+ + + G E + K LK
Sbjct: 1004 EKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKP 1063
Query: 1055 IQGPALALILERIKLNGASQVS---------MGPTSKSSSK-VPKSASNGVS-------- 1096
+ +LE+ K N S+ + MG ++ + ++ +P + VS
Sbjct: 1064 TSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPIPAPVEDSVSSTIEAKPD 1123
Query: 1097 --KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER----MVVRRF 1150
K +SS+ +G + S ++++ +S + V + KE R R + V ++
Sbjct: 1124 LKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPNGKEQRMRDEKGLKVLKW 1183
Query: 1151 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1210
F PR E I++L+ M + L + +DF+ L ++ L S + +I LD
Sbjct: 1184 NFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKDGVISCLD 1243
Query: 1211 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270
++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+EA+ F+P L+ K G +
Sbjct: 1244 LILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLILKVGEPKD 1303
Query: 1271 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1330
+R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++ +G LI+ +G +
Sbjct: 1304 VIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLIESYGMNVCQPT 1363
Query: 1331 --KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1388
K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G L++ SML++R K
Sbjct: 1364 PGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRS 1423
Query: 1389 VREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRN 1438
+ K+ E KP + LR+ E+ S Q+ +S ++RR
Sbjct: 1424 AKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQARSLSGHPEAAQMVRRE 1483
Query: 1439 Y 1439
+
Sbjct: 1484 F 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 275/1036 (26%), Positives = 510/1036 (49%), Gaps = 63/1036 (6%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEK 135
A++ D ++A + K + RP+ EK +L +E ++ + ++ + K
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ K ++ ++ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL P S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ + + +LE
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
K KEKK +V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS S K+P +A
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSS----------SNKKPAAAT- 524
Query: 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL--GSLIPADTVGQL 610
S + + + P S ++I+++L ++ + + L
Sbjct: 525 -----------GNSKSSSTTTPTGRSSNSSPLPPPPSSSDDIKNKLIGAGIVNNEIIEGL 573
Query: 611 KSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668
WK+RL+A+ + + V+ + +++ E +++L+C P E N QV + +
Sbjct: 574 GKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQLLCDKPSLKESNFQVLSSIFSIFI 633
Query: 669 YLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ F ++C L E++ D+K + + + L + E++ P +F +Y+
Sbjct: 634 QCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSELLFSTGESITPHAVFTSIYQFTS 693
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDLIDFCKDTGLQSSAAATRNATIKL 782
+HKNPK++++ ++W+ A+++FG+ +LK L+D+ K L+S+ + + IKL
Sbjct: 694 NHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPLLDYTKQC-LESTNPDVKKSAIKL 752
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842
L + +G + FL DVK + LD E++K + VP + + S
Sbjct: 753 LCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQKPPVPNRQWKGMPPPGSAPVQIE 812
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
PR DIS K TP ++ +L +WK R ++++ + +I+ +AN++IQP G L L+
Sbjct: 813 --FPRVDISVKLTPAIITNLSDANWKTRSDALDEIERIIIDANRKIQPK-LGGLIPALKN 869
Query: 903 RLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL D+N+ + TL +G ++ AM G + EK ++ ++ IL LGD+KK +R+ ++ ++
Sbjct: 870 RLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLIPGILLLLGDSKKPVRDAVISCMN 929
Query: 962 AWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPA 1017
+ + + D + + + A RK+ W +T + P + L K
Sbjct: 930 VIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWTIVNVTNMKAAPIPSEINTLAKGI 987
Query: 1018 SIAMTDKSSDVRKAAE 1033
+ DKS+++R A+
Sbjct: 988 ISCLQDKSAEIRSLAD 1003
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 160/568 (28%), Positives = 264/568 (46%), Gaps = 65/568 (11%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRI---RELGPLF 57
MS++++ ++ KLP E R++HK WKVR A + + D DN L+
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELW 58
Query: 58 KKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQA 115
K + DSN Q+ A +AY + +D A+E+ +I+ KCLT R T E A
Sbjct: 59 KSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALE 118
Query: 116 VFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPE 175
ML VE ++ ++ + ++ + K + + + + +FGAK+IP K I+ +
Sbjct: 119 ALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISN 178
Query: 176 LFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235
LF H D+NVR + LT+ + RW G DP+K +LF+ +R KELE + P +
Sbjct: 179 LFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPK 235
Query: 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEI-----------DEYELVDPVDILTP 284
+ R + ++ E P+ E+ + P + D+++LV+ VD+L P
Sbjct: 236 QTRFLKSQQPTSE---------PNVETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-P 285
Query: 285 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAV 343
+ ++KW +RK+A+ +L + S +I DF + L K ++ D NI V +
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVI 345
Query: 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403
A I +A+GLR++FS + + LLE+ KEKK V ESL+ + A+ L+ D
Sbjct: 346 NAAHCIQAMAKGLRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLD--D 403
Query: 404 VVEDVKTSVKNKVPLVRSLTLNWVT------------FCIETSSKAAVLKVHKDYVPICM 451
+ E + + NK P ++S + + F ++T +KA V V + P
Sbjct: 404 LAELIASFAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP--- 460
Query: 452 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 511
VR AA L + K VG R + + + LDD+R++K+ T T
Sbjct: 461 ---------VRSAAAEALGVLMKLVGERAINQYLSPLDDIRKSKIRSFY-------ETAT 504
Query: 512 SSARVQTSGGSVPSVEASESSFVRKSAA 539
A+ T V + ES V S A
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 236/530 (44%), Gaps = 63/530 (11%)
Query: 19 RLLHKNWKVRNEANIDL-----AALCDS-------ITDPKDNRIRELGPLFKKTVADSNA 66
++ K+WKVR EA L AL DS I DP L+K+ + DSN
Sbjct: 13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPA---------LWKQGLCDSNV 63
Query: 67 PVQDKALDALIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVEL 123
P Q+ A+ +L +L + AK V + KCL +++ A QA+ +L +
Sbjct: 64 PTQEHAVKSLRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKS 122
Query: 124 EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQN 183
+A+D L+ + A + K K V +I + L FG + P K++P LF D+N
Sbjct: 123 DALDYVLEGLFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKN 182
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV---------------- 227
+R + L++ L W+G + KT +F +++ +LE NV
Sbjct: 183 IRQEASNLSITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNT 241
Query: 228 --------SGTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEESTADVPPEIDE 272
S A+P + ++ + Q S P PS+ S + +
Sbjct: 242 QEVVLPSFSSNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSP 301
Query: 273 YELV---DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRT 329
+ + PVD+L+ L F + + KW +RK+A+ + + S GD++E+ R
Sbjct: 302 AKNIVGSTPVDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVYQEGDYSELLRV 360
Query: 330 LKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQT 389
+ K + D N+ V A + ++A+ LR F + +LP L ++ KE+K ++ SL
Sbjct: 361 IAKSLKDANVVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKERKSSLVHSLLDA 420
Query: 390 LQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
A+ ++ LN D++++ +K+K P V++ TL W+ C++ + + +
Sbjct: 421 ANAIFESCGLN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCPPRASLETLCSL 478
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499
C+ +ND VR A +VLA + + L + I LD + K+ E+
Sbjct: 479 CVTLINDTFEPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILEL 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 352/754 (46%), Gaps = 111/754 (14%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-DSITD-PKDNRIREL---GP 55
MS EE++ + LP E+RL +K WK R EA +L L +S+ D +D+ I+
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC------DAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVEL-----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI 163
T ++ + + L ++V++ + EK K+ K + A + +++ ++ FG
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEK----KLPKLIAAAANCVYELMAAFGLTN 174
Query: 164 IPPK----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMK 217
+ + +LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++
Sbjct: 175 VNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234
Query: 218 KELEVELVNVSGTARPTRKI----RAEQDKELGQE--------LISEDVGPGPSEES--- 262
K+L V ++ + + E +K+ QE ++S D G ++
Sbjct: 235 KDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDT 294
Query: 263 ----TADVPP-------EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-- 309
D+PP +ID + ++ IL L K F E + ++KW +R +A+ E
Sbjct: 295 LMGMETDMPPSKQQSGVQIDTFSMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWD 353
Query: 310 TKLASTKRI--APGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS- 364
+ L+ TK++ +++ + +I D NI A Q++ + L+T FS
Sbjct: 354 SVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 413
Query: 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLV 419
+ LL++ KEKKP+V E++ + L + K A D+++D+ +K+K P +
Sbjct: 414 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI 473
Query: 420 R--SLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
R L + E + + + KD VPI ++ +ND P +R F A + K
Sbjct: 474 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 533
Query: 477 GMRPLERSIEKLDDVRRNKLSEMIAG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
GM +++E LD+++R K+ E + +A+G++ + ++T+ + P E+ F+
Sbjct: 534 GMNTFVKTLEHLDNLKRKKIEETVKTLPNFSIASGSTHSTIETNKQTGP----MENKFLL 589
Query: 536 KSAASMLSGKRPVSAAP----ASKKGGPV-------KPS--AKKDGSGKQETSKLTEAPE 582
K +S+L KR V+++P K P+ KPS A + S TSK P+
Sbjct: 590 K-KSSVLPSKR-VASSPLRNDNKSKVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPK 647
Query: 583 DV-----EPSEMSLEEIESRLGSLIPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAV 632
+V + +E +EE + RL L Q +W KER LE +++ ++E +
Sbjct: 648 NVVANSTDKNEKLIEEYKYRLQKL-------QNDEMIWTKERQSLLEKMNNTENYKIEMI 700
Query: 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666
+ + E L L +EKN+Q++ + I+V
Sbjct: 701 KENEMLREQLKEAQSKL---NEKNIQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 269 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 326
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 327 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 385
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 386 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 444
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 380
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 498
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 499 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 550
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 551 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 591
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1610 | ||||||
| 224115548 | 2025 | microtubule organization protein [Populu | 0.992 | 0.789 | 0.842 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 0.992 | 0.784 | 0.843 | 0.0 | |
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.970 | 0.784 | 0.839 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.990 | 0.783 | 0.818 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.990 | 0.783 | 0.819 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.991 | 0.786 | 0.788 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.986 | 0.802 | 0.786 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.978 | 0.786 | 0.780 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.987 | 0.803 | 0.779 | 0.0 | |
| 115440677 | 1997 | Os01g0816400 [Oryza sativa Japonica Grou | 0.983 | 0.793 | 0.731 | 0.0 |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2756 bits (7144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1358/1611 (84%), Positives = 1473/1611 (91%), Gaps = 13/1611 (0%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAV+ FLD MEKAIKNKV+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVEAFLDAMEKAIKNKVSKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVAGPGQSEEVAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPL 418
SGSSRFLLPVLLEKLKEKKPT+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPL
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPL 420
Query: 419 VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
VRSLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGM
Sbjct: 421 VRSLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGM 480
Query: 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538
RPLERS+EKLDDVRR KLSEMIAGSG VA +S VQT+ GS+ SVE SESSFV+KSA
Sbjct: 481 RPLERSLEKLDDVRRKKLSEMIAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSA 540
Query: 539 ASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIES 596
ASMLSGK+P AAPA+KK P K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+
Sbjct: 541 ASMLSGKKPAPAAPANKKAAPTKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIET 600
Query: 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656
RLGSLI ADT+ QLKSAVWKERLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKN
Sbjct: 601 RLGSLIQADTISQLKSAVWKERLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKN 660
Query: 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG 716
VQVQQQ IEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPG
Sbjct: 661 VQVQQQFIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPG 720
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
F+F+RLYKIMK+HKNPKVLSEGILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+R
Sbjct: 721 FVFDRLYKIMKEHKNPKVLSEGILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASR 780
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTS 835
NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG + +PKKTVR SES +
Sbjct: 781 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMT 840
Query: 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895
VS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGE
Sbjct: 841 CVSGGGLDSLPREDISGKVTPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGE 900
Query: 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955
LFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC
Sbjct: 901 LFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 960
Query: 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015
L LD+W+AAVHLDKM+PY+T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLK
Sbjct: 961 ALNTLDSWVAAVHLDKMIPYITAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLK 1020
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ- 1074
PA AMTDKS+DVRKAAEACI EILR GQE IE+NLKDI GPALAL+LER++ Q
Sbjct: 1021 PAGSAMTDKSADVRKAAEACISEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQE 1080
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
+SMGP+SK+SSKV K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQ
Sbjct: 1081 SFESTKTISMGPSSKTSSKVGKAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQ 1140
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQALLNVKDSNKEDRERMVVRRFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQ
Sbjct: 1141 SQALLNVKDSNKEDRERMVVRRFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQ 1200
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDGLEMLQKALPSI +IIEVLDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y
Sbjct: 1201 VDGLEMLQKALPSIGNEIIEVLDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAY 1260
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+L+ESEAA+FLPCL+EK GHNIEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRT
Sbjct: 1261 TLSESEAAIFLPCLIEKLGHNIEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRT 1320
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVGFLID HGAEISGQLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIW
Sbjct: 1321 RIECADLVGFLIDQHGAEISGQLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIW 1380
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
RY+GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQ
Sbjct: 1381 RYLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQ 1440
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
SVSGP L R+N+G EL VER IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVC
Sbjct: 1441 SVSGPILARKNFGTQELQVERHIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVC 1500
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
HELAQAT+D EGSVMDELVKDADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTF
Sbjct: 1501 HELAQATSDEEGSVMDELVKDADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTF 1560
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
QNK LA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL
Sbjct: 1561 QNKTLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1611
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2746 bits (7119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1365/1618 (84%), Positives = 1475/1618 (91%), Gaps = 20/1618 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE PLF+KT
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFAPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE VG GPSEE A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWS
Sbjct: 241 QDKEPEPEGVSEVVGSGPSEEVAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
SGSSRFLLPVLLEKLKEKKPT+ E+L QTLQAMH AGCLNL D++E VKT+VKNK
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTLNWVTFCIETS+KA +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKS
Sbjct: 421 VPLVRSLTLNWVTFCIETSNKAVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMIAGSG V SS VQ GS+ SVE SE SFV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
KSAASMLSGKRP AA A+KK P K S K DG+G+ E+S+ E PEDVEP+EMSLEE
Sbjct: 541 KSAASMLSGKRPAPAAAANKKAAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IE+RLGSLI ADTV QLKSAVWKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+
Sbjct: 601 IETRLGSLIQADTVSQLKSAVWKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWN 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI YLA+TA+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV
Sbjct: 661 EKNVQVQQQVIEVITYLASTASKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGF+F+RLYKIMK+HKNPKVLSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS A
Sbjct: 721 GPGFVFDRLYKIMKEHKNPKVLSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
A+RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SE
Sbjct: 781 ASRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSE 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
STSSVS GG D LPREDISGK TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP G
Sbjct: 841 STSSVSGGGLDSLPREDISGKITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRLYDSNKNL+M L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLYDSNKNLIMTALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
RECTL LD+W+AAVHLDKMVPY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA H
Sbjct: 961 RECTLNTLDSWVAAVHLDKMVPYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIH 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKAAEACI EILR GQE IEKNLKDIQGPALAL+LER++ G
Sbjct: 1021 LLKPASSAMTDKSSDVRKAAEACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGG 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q +SMGP+SK+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS
Sbjct: 1081 FQGLSFESFESTKTISMGPSSKTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMS 1140
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
QD AVQSQALLNVKDSNKEDRERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLL
Sbjct: 1141 FQDRAVQSQALLNVKDSNKEDRERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLL 1200
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEML KALPSI K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD
Sbjct: 1201 SPDFKKQVDGLEMLHKALPSIGKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFD 1260
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
LRDE Y+L+ESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGL
Sbjct: 1261 RLRDEAYTLSESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGL 1320
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1321 RSKNNRTRIECADLVGFLIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1380
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWR++GKLTDAQKSM+DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAE
Sbjct: 1381 ILGEDIWRFLGKLTDAQKSMIDDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAE 1440
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++SQSVSGP + R+NYG ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSV
Sbjct: 1441 QSGELSQSVSGPIIARKNYGTQELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSV 1500
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVL 1540
EGMKVVCHELAQATND EGS MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVL
Sbjct: 1501 EGMKVVCHELAQATNDAEGSAMDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVL 1560
Query: 1541 NTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
NTLMQTFQNK LAYAV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL
Sbjct: 1561 NTLMQTFQNKILAYAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1618
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2731 bits (7080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1351/1609 (83%), Positives = 1450/1609 (90%), Gaps = 46/1609 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIA+L+AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLW
Sbjct: 61 VADSNAPVQEKALDALIAFLRAADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEAVDVFLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 VELEAVDVFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E +SE GPG SEE+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEPEAVSEVAGPGQSEEAAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRIAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LKVHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKVHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LERS+EKLDDVRR KLSEMI GSGG+ + GTSSA VQ GSV S EASE SFVR+SAAS
Sbjct: 481 LERSLEKLDDVRRKKLSEMIGGSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+P+ AAPA+KKGGP K K DG+G+ ETSK E PEDVEP+EMSLEEIESRL
Sbjct: 541 MLSGKKPLPAAPANKKGGPTKSGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRL 600
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI A+TV QLKS VWKERLEAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQ
Sbjct: 601 GSLIQAETVSQLKSTVWKERLEAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQ 660
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQ+IEVI YLA+TATKFPKKCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 661 VQQQMIEVITYLASTATKFPKKCVVLCLLGTSERVADIKTRAHAMKCLTTFS-------- 712
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNA
Sbjct: 713 ---------------------------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNA 745
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKLLGALHK+VGPDIKGFL+DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSV
Sbjct: 746 TIKLLGALHKYVGPDIKGFLSDVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSV 805
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
S+GG D LPRED+SGK TPTL+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELF
Sbjct: 806 SAGGLDSLPREDVSGKVTPTLLKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELF 865
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRLYDSNKNLVMATL T+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC L
Sbjct: 866 GALRGRLYDSNKNLVMATLTTIGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECAL 925
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T +D+WLAAVHLDKM+PY+ TAL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA
Sbjct: 926 TTIDSWLAAVHLDKMIPYIATALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPA 985
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
AMTDKSSDVRKAAEACI E+LR GQET+EKNLKD+ GPALAL+LER+K GA Q
Sbjct: 986 GSAMTDKSSDVRKAAEACITEVLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESF 1045
Query: 1075 -----VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQ 1129
+SMGPTSK+++KV KSA+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQ
Sbjct: 1046 DSAKTISMGPTSKTNAKVGKSATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQ 1105
Query: 1130 ALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVD 1189
ALLNVKDSNKEDRERMVVRRFKFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVD
Sbjct: 1106 ALLNVKDSNKEDRERMVVRRFKFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVD 1165
Query: 1190 GLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSL 1249
GLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+L
Sbjct: 1166 GLEMLQKALPSIAKELIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTL 1225
Query: 1250 TESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRI 1309
TESEAA+FLPCL+EK GHNIEKVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRI
Sbjct: 1226 TESEAAIFLPCLIEKLGHNIEKVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRI 1285
Query: 1310 ECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369
E DLVGFLIDHH AEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRY
Sbjct: 1286 ESADLVGFLIDHHVAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRY 1345
Query: 1370 VGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSV 1429
VGKLTDAQKSMLDDRFKWKVREMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSV
Sbjct: 1346 VGKLTDAQKSMLDDRFKWKVREMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSV 1405
Query: 1430 SGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1489
SGPT +R+NY ELH++R IMP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE
Sbjct: 1406 SGPTFLRKNYSPHELHMDRQIMPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHE 1465
Query: 1490 LAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1549
LAQAT DPEGS MDELVKDADRLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQN
Sbjct: 1466 LAQATGDPEGSAMDELVKDADRLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQN 1525
Query: 1550 KRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
KRLA+AV+ESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL
Sbjct: 1526 KRLAHAVKESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1574
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2652 bits (6873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1325/1619 (81%), Positives = 1445/1619 (89%), Gaps = 25/1619 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGP EES D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+L QTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K + KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E SES V+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + PA KK G VK + K DG + + K E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ LKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW
Sbjct: 601 IESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWG 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++++TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKIMK+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+V +GG D LPREDISGK +PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMVPY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL LI+E++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G SK +K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGAISK--AKAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NYG + +++R +MPR + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMTRSLAGP-ILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKV+CHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKIL
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKIL 1615
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2637 bits (6834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1327/1619 (81%), Positives = 1449/1619 (89%), Gaps = 25/1619 (1%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
V DSNAPVQ+KALDALIAYL+AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW
Sbjct: 61 VTDSNAPVQEKALDALIAYLRAADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAVD FLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQ
Sbjct: 121 IELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKD VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE QE +SE VGPGPSEES D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEQEAVSEVVGPGPSEESGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTKRI+PGDF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNK 415
S SSRFLLPVLLEKLKEKKP +AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNK
Sbjct: 361 SSSSRFLLPVLLEKLKEKKPALAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNK 420
Query: 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
VPLVRSLTL WVTFCIETS+K ++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKS
Sbjct: 421 VPLVRSLTLTWVTFCIETSNKGVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKS 480
Query: 476 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 535
VGMRPLERS+EKLDDVRR KLSEMI+GS V +S+A VQ + S S E+SES+FV+
Sbjct: 481 VGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVK 540
Query: 536 KSAASMLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEE 593
+SAA MLSGKRPV + P +KKGG VK K DG + + SK E PEDVEP+EMSLEE
Sbjct: 541 RSAAGMLSGKRPVQSVPVAKKGGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEE 600
Query: 594 IESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWS 653
IESR+GSLI +DT+ QLKSAVWKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWS
Sbjct: 601 IESRIGSLIQSDTITQLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWS 660
Query: 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713
EKNVQVQQQVIEVI ++ +TATKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAV
Sbjct: 661 EKNVQVQQQVIEVITHIGSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAV 720
Query: 714 GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAA 773
GPGFIFERLYKI+K+HKNPKVLSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS A
Sbjct: 721 GPGFIFERLYKILKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNA 780
Query: 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASE 832
ATRNA+IK LG LH+FVGPDIKGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+
Sbjct: 781 ATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASD 840
Query: 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892
S+S+ +GG D LPREDISGK TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ G
Sbjct: 841 SSSTAVAGGLDSLPREDISGKITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATG 900
Query: 893 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952
TGELFG LRGRL DSNKN+VMA+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 901 TGELFGALRGRLVDSNKNIVMASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHM 960
Query: 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012
REC L LDAWLAAVHLDKMV Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA
Sbjct: 961 RECVLNTLDAWLAAVHLDKMVSYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQ 1020
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072
LLKPAS AMTDKSSDVRKA+EACI EILR G E IEK +KDI GPAL L+LE++K GA
Sbjct: 1021 LLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGA 1080
Query: 1073 SQ------------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120
Q VS+G TSK +K KS +NGVSKHGNRA+SSRV+ TKG + ESI S
Sbjct: 1081 FQGTFFESFESGRAVSVGATSK--AKAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-S 1137
Query: 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLL 1180
VQD AVQSQALLN+KDSNKEDRERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLL
Sbjct: 1138 VQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLL 1197
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
S DFKKQVDGLEMLQKALPSI K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL D
Sbjct: 1198 SADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLD 1257
Query: 1241 TLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300
TL+DEGYSLTESE AVFLPCLVEK GHNIEKVREKMRELTKQ V YSA+K PYILEGL
Sbjct: 1258 TLKDEGYSLTESEVAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGL 1317
Query: 1301 RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360
RSKNNRTRIEC DLVGF+IDHHGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYK
Sbjct: 1318 RSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYK 1377
Query: 1361 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAE 1420
ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AE
Sbjct: 1378 ILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAE 1437
Query: 1421 QSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSV 1480
QSG++++S++GP ++R+NY + +++R +MP + SGPTDWNEALDIISFGSPEQSV
Sbjct: 1438 QSGEMARSLTGP-MLRKNYAQPDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSV 1496
Query: 1481 EGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLT-GASSRSCKYV 1539
+GMKVVCHELAQAT+DPEGS MDELVKDADRLVSCLANKVA+TFDFSLT GASSRSCKYV
Sbjct: 1497 DGMKVVCHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYV 1556
Query: 1540 LNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
LNTLMQTFQNKRLA+AV+ESTLDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKIL
Sbjct: 1557 LNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKIL 1615
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2586 bits (6702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1271/1611 (78%), Positives = 1436/1611 (89%), Gaps = 15/1611 (0%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE GPLF+KT
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALI YLKAADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW
Sbjct: 61 VADSNAPVQEKALDALICYLKAADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
+ELEAV+ FLD MEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ
Sbjct: 121 IELEAVEAFLDAMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWI K+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWISKETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE E++S+ V GPSEES ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWS
Sbjct: 241 QDKEPELEVVSDAVAAGPSEESAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAELTKLASTK+IAPGDF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF
Sbjct: 301 ERKEAVAELTKLASTKKIAPGDFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
SGSSRFLLPVLLEKLKEKKPT+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVR
Sbjct: 361 SGSSRFLLPVLLEKLKEKKPTLTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
SLTLNWVTFCIETS+KA +LK HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRP
Sbjct: 421 SLTLNWVTFCIETSNKAVILKAHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRP 480
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
LE+S+EKLDDVR+ KLSEMI GSGGD + +SS V +SGG + S +AS S V++SAAS
Sbjct: 481 LEKSLEKLDDVRKKKLSEMIGGSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAAS 540
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
MLSGK+PV AAP SKKG K K DG+ + + SK E EDVEP+EMSLEEIES+L
Sbjct: 541 MLSGKKPVQAAPPSKKGASAKSGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKL 599
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
GSLI +T+ QLKSAVWKERLEAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQ
Sbjct: 600 GSLIQPETITQLKSAVWKERLEAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQ 659
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQ VI++IN++A+TA+K+PKKCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+
Sbjct: 660 VQQLVIDIINHIASTASKYPKKCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFV 719
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNA
Sbjct: 720 FERLYKIMKEHKNPKVLSEGILWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 779
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSV 837
TIKL+GALHKFVGPDIKGFL+DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+
Sbjct: 780 TIKLIGALHKFVGPDIKGFLSDVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSL 838
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSGG D LPREDISGK TP L+K LES DWK RLESIE VNKILEEANKRIQP GTGELF
Sbjct: 839 SSGGLDSLPREDISGKITPALLKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELF 898
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
G LRGRL SNKNLV+ATL T+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL
Sbjct: 899 GALRGRLCYSNKNLVIATLSTVGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTL 958
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
LD+WLAAVHLDKMVPY+T ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP
Sbjct: 959 NTLDSWLAAVHLDKMVPYITGALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPV 1018
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ AMTDKS+DVRKAAEAC E+LR GQE + KNLKDIQGPALA+++ER++ G Q
Sbjct: 1019 ASAMTDKSADVRKAAEACFGELLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETF 1078
Query: 1075 -----VSMGPTSKSSSKVPKSA--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
S G TSK SK+ KS + S+HGNRA +SR IPT+ +R E++MSVQD +VQ
Sbjct: 1079 DLGRTSSTGTTSKVGSKIGKSTGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQ 1138
Query: 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQ 1187
SQAL+NVKDS+K +RER+VVRRFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQ
Sbjct: 1139 SQALINVKDSHKGERERIVVRRFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQ 1198
Query: 1188 VDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247
VDG+EMLQKALPSI K++IEVLDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY
Sbjct: 1199 VDGIEMLQKALPSIAKELIEVLDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGY 1258
Query: 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRT 1307
+TE+EAA+FLPCLVEKSGHNIEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRT
Sbjct: 1259 MMTEAEAAIFLPCLVEKSGHNIEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRT 1318
Query: 1308 RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367
RIEC DLVG+L+D+H AEI GQLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW
Sbjct: 1319 RIECADLVGYLLDNHEAEIGGQLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIW 1378
Query: 1368 RYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQ 1427
+Y+GKLT+AQ+SMLDDRFKWK REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+
Sbjct: 1379 KYLGKLTEAQRSMLDDRFKWKAREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSR 1438
Query: 1428 SVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVC 1487
S++GP L R Y ++E +ER + R ++ GP+DWNEALDII+ SPEQSVEGMKVVC
Sbjct: 1439 SLAGPILNRDIYNNTEFPMERIVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVC 1498
Query: 1488 HELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTF 1547
H LA ATNDPEGS MD++VKDAD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTF
Sbjct: 1499 HLLAVATNDPEGSAMDDIVKDADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTF 1558
Query: 1548 QNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
QN+ LA+AV+ESTLD LITELLLWLLDERVP MDDGSQLLKALNVLMLKIL
Sbjct: 1559 QNRTLAHAVRESTLDILITELLLWLLDERVPRMDDGSQLLKALNVLMLKIL 1609
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2529 bits (6554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1261/1604 (78%), Positives = 1408/1604 (87%), Gaps = 15/1604 (0%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G LF+KTV
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKKP+V E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKPSVTEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + SE+SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +APAS K G KKDGS + E K E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAPASKKVGTGKPGGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +T+ QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETISQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISSKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIILALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQETIEKNLKDI GPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK SK+ KS SNG K GNR SR +PTKG++ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVSKISKSTSNGTLKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNT 1134
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1135 KDSNKEDRERVVVRRIKFEELRPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1194
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1195 QKALPSVSKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1254
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1255 AIFLPCLAEKLGHNIEKVREKMRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDL 1314
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L +VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLT
Sbjct: 1315 IGYLLETCGTEIGGLLKYLNMVASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLT 1374
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWKV+EMEK++EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP
Sbjct: 1375 DAQKSMIDDRFKWKVKEMEKRREGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLF 1434
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R+NYG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1435 PRQNYGISEQILERNPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1494
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1495 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1554
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKIL
Sbjct: 1555 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKIL 1598
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2513 bits (6513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1259/1613 (78%), Positives = 1408/1613 (87%), Gaps = 37/1613 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE GPLF+KT
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFGPLFRKT 60
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLW 120
VADSNAPVQ+KALDALIAYL+AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLW
Sbjct: 61 VADSNAPVQEKALDALIAYLRAADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLW 120
Query: 121 VELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ 180
VELEA DVFLD MEKAIKNKVAKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQ
Sbjct: 121 VELEAADVFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQ 180
Query: 181 DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 240
DQNVRASSKGLTLELCRWIGKDPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+E
Sbjct: 181 DQNVRASSKGLTLELCRWIGKDPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSE 240
Query: 241 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
QDKE +E SE VG GPSEES ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWS
Sbjct: 241 QDKEPEKEDTSEAVGTGPSEESVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWS 300
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF 360
ERK+AVAEL+KLAST++IAPGDF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +F
Sbjct: 301 ERKEAVAELSKLASTRKIAPGDFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANF 360
Query: 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVR 420
S SSRFLLPVLLEKLKEKKP + ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVR
Sbjct: 361 SASSRFLLPVLLEKLKEKKPALMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVR 420
Query: 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480
S TL+WVTFCIETS+KA +LKVHK+YVPI ME LNDGTPEVRDAAF LAA+AK
Sbjct: 421 SSTLSWVTFCIETSNKAVILKVHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK------ 474
Query: 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 540
IE L + ++ + + V S+ FV+KSAAS
Sbjct: 475 ----IESLSLSLSSGFGMLVPIYFAFIVN-----------NQLDLVLDSDGLFVKKSAAS 519
Query: 541 MLSGKRPVSAAPASKKGGPVKPSAKK--DGS----GKQETSKLTEAPEDVEPSEMSLEEI 594
MLSGKRP AAP+SKKG K K DGS ++SK E PEDVEP+EMSLEE+
Sbjct: 520 MLSGKRPAQAAPSSKKGNLAKSGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEV 579
Query: 595 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 654
ES+LGSLI ADTV QLKS VWKERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSE
Sbjct: 580 ESKLGSLIEADTVSQLKSTVWKERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSE 639
Query: 655 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVG 714
KNVQVQQQVIEVI Y+A+TA KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVG
Sbjct: 640 KNVQVQQQVIEVITYIASTAKKFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVG 699
Query: 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774
PGFIFERL+KIMK+HKNPKVLSEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAA
Sbjct: 700 PGFIFERLFKIMKEHKNPKVLSEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAA 759
Query: 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASES 833
TRN TIKLLG +HKFVGPD+KGFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E
Sbjct: 760 TRNVTIKLLGCVHKFVGPDLKGFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEEL 819
Query: 834 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893
TSS S G+DGLPREDISGK TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT
Sbjct: 820 TSSTSVSGTDGLPREDISGKITPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGT 879
Query: 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953
+L G LRGRLYDSNKNLVMATL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMR
Sbjct: 880 SDLLGALRGRLYDSNKNLVMATLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMR 939
Query: 954 ECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013
E TLT LDAWLAAVH DKM+PY+ AL D K+ AEGRKDL +WLS++L+G++ DA L
Sbjct: 940 EATLTALDAWLAAVHFDKMIPYMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQL 999
Query: 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK----- 1068
LKPA A+TDKSSDVRKAAE+CI EILR G QE +EK +KDI GP L+L+LER++
Sbjct: 1000 LKPACSALTDKSSDVRKAAESCITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGAL 1059
Query: 1069 ---LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
+ A QV+ SK++ KV K+ SNGV+KHGN+AISSR +KG R ES++S D A
Sbjct: 1060 QESFDSAKQVTSSLPSKNAIKVGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLA 1119
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFK 1185
VQSQALLNVKDSNKE+RER++VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFK
Sbjct: 1120 VQSQALLNVKDSNKEERERIIVRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFK 1179
Query: 1186 KQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDE 1245
KQVDG+EMLQKAL SI KD+IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DE
Sbjct: 1180 KQVDGIEMLQKALASIGKDVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDE 1239
Query: 1246 GYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305
GY + ESEAA+FLPCL+EK GHNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNN
Sbjct: 1240 GYCINESEAAIFLPCLIEKLGHNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNN 1299
Query: 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGED 1365
RTRIEC DL+GFLID++G+EISGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE+
Sbjct: 1300 RTRIECADLIGFLIDNYGSEISGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEE 1359
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
+WRYVGKLTDAQ+SMLDDRFKWKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+V
Sbjct: 1360 VWRYVGKLTDAQRSMLDDRFKWKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEV 1419
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKV 1485
S+S+SG R+NYG SELH+ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKV
Sbjct: 1420 SRSMSGTISTRKNYG-SELHMERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKV 1478
Query: 1486 VCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQ 1545
VCHELAQA++DPEGS MDEL +DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQ
Sbjct: 1479 VCHELAQASSDPEGSSMDELARDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQ 1538
Query: 1546 TFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
TFQNKRLAYAV+E TLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL
Sbjct: 1539 TFQNKRLAYAVKEKTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1591
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2512 bits (6511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1251/1604 (77%), Positives = 1404/1604 (87%), Gaps = 14/1604 (0%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTV
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEAVDVFLD MEKAIKNKVAKAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQD
Sbjct: 123 ELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQ
Sbjct: 183 QNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
DKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 DKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
RK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS
Sbjct: 303 RKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
SSRF+LPVLLEKLKEKK +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS
Sbjct: 363 ASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPL
Sbjct: 423 STLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASM
Sbjct: 483 ERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASM 541
Query: 542 LSGKRPVSAAPAS-KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 600
LSGKRP +A AS K G KKDGS + E SK E PEDVEP+EM LEEIE+RLGS
Sbjct: 542 LSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGS 601
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ 660
L+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQ
Sbjct: 602 LVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQ 661
Query: 661 QQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
QQVIE+I Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FE
Sbjct: 662 QQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFE 721
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
RL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATI
Sbjct: 722 RLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATI 781
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840
KLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V + ++S SSG
Sbjct: 782 KLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSG 840
Query: 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900
G D LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGL
Sbjct: 841 GLDSLPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGL 900
Query: 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960
RGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL L
Sbjct: 901 RGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAAL 960
Query: 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1020
D WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS A
Sbjct: 961 DLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTA 1020
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQ 1074
MTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+
Sbjct: 1021 MTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSK 1080
Query: 1075 VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134
GP SK +K+ KS SNG K GNR SR +PTKG+ I SV D A+QSQALLN
Sbjct: 1081 AMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNT 1135
Query: 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEML 1194
KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+L
Sbjct: 1136 KDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEIL 1195
Query: 1195 QKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEA 1254
QKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EA
Sbjct: 1196 QKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEA 1255
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDL 1314
A+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL
Sbjct: 1256 AIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDL 1315
Query: 1315 VGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLT
Sbjct: 1316 IGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLT 1375
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1434
DAQKSM+DDRFKWK ++MEK++EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP
Sbjct: 1376 DAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLF 1435
Query: 1435 MRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT 1494
R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+
Sbjct: 1436 PRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQAS 1495
Query: 1495 NDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAY 1554
NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+
Sbjct: 1496 NDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAH 1555
Query: 1555 AVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
AV+E TL+SLITELLLWLLDERVP M+DGSQLLKALNVLMLKIL
Sbjct: 1556 AVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKIL 1599
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115440677|ref|NP_001044618.1| Os01g0816400 [Oryza sativa Japonica Group] gi|75251094|sp|Q5N749.1|MOR1_ORYSJ RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1 gi|56785068|dbj|BAD82707.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|56785322|dbj|BAD82281.1| putative microtubule bundling polypeptide TMBP200 [Oryza sativa Japonica Group] gi|113534149|dbj|BAF06532.1| Os01g0816400 [Oryza sativa Japonica Group] gi|222619446|gb|EEE55578.1| hypothetical protein OsJ_03864 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2338 bits (6060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1180/1614 (73%), Positives = 1386/1614 (85%), Gaps = 30/1614 (1%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTV 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE GPLFKKTV
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFGPLFKKTV 62
Query: 62 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWV 121
ADSNAPVQ+KALDAL+A+ +AADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWV
Sbjct: 63 ADSNAPVQEKALDALLAFQRAADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWV 122
Query: 122 ELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD 181
ELEA +VFL+ MEKA+KNKVAKAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH D
Sbjct: 123 ELEAAEVFLESMEKAVKNKVAKAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPD 182
Query: 182 QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ 241
QNVRASSKGLTLELCRWIGK+PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ
Sbjct: 183 QNVRASSKGLTLELCRWIGKEPVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQ 242
Query: 242 DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSE 301
+KEL +E++ E G SEE+ + P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSE
Sbjct: 243 EKELEEEVVPEAAGTNNSEEAVPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSE 302
Query: 302 RKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361
R+DAVAELTKLASTK+IAPGDF E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFS
Sbjct: 303 RRDAVAELTKLASTKKIAPGDFHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFS 362
Query: 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRS 421
G+SR LLPVLLEKLKEKKPT+ E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRS
Sbjct: 363 GNSRVLLPVLLEKLKEKKPTMTEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRS 422
Query: 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481
LTLNWV FCIETS+KA VLK+HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PL
Sbjct: 423 LTLNWVAFCIETSNKATVLKLHKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPL 482
Query: 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541
ERS+EKLDDVR+ KLS+MI GS D +GT +A +G + E +SS +R+SAASM
Sbjct: 483 ERSLEKLDDVRKKKLSDMI-GSASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASM 539
Query: 542 LSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRL 598
LSGK+PV A PA+KK GP K +AKK G Q SK + AP EDVEPSEMSLEEIE +L
Sbjct: 540 LSGKKPVQAVPATKKSGPAKSATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKL 597
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQ 658
S++ ++T+ QLKS VWKERLEAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQ
Sbjct: 598 SSVVKSETISQLKSTVWKERLEAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQ 657
Query: 659 VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
VQQQVIEV Y+A+T +FPK+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+
Sbjct: 658 VQQQVIEVSTYIASTVNRFPKRCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFV 717
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
FERLYKIMK+HKNPKVLSEGILWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNA
Sbjct: 718 FERLYKIMKEHKNPKVLSEGILWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNA 777
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSV 837
TIKL+G LHKFVGPDIKGFL+DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS
Sbjct: 778 TIKLIGVLHKFVGPDIKGFLSDVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSA 837
Query: 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF 897
SSG SDGLPREDIS K TPTL+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF
Sbjct: 838 SSGTSDGLPREDISAKITPTLLKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELF 897
Query: 898 GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL 957
LR RLYDSNKNLVMATL T+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTL
Sbjct: 898 TALRARLYDSNKNLVMATLSTIGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTL 957
Query: 958 TVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017
T LD W+AA LDKMVPY+T L D K G+EGRKDLFDWLSK + +S +A LLKP+
Sbjct: 958 TALDLWVAAAQLDKMVPYITVTLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPS 1017
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074
+ ++ DKSS+VRKAAE+ + EIL+ GQ+ + KNLKD+ P LA++ ER+KL+ +
Sbjct: 1018 ASSLMDKSSEVRKAAESFMNEILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFS 1077
Query: 1075 -------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
SM SK+ SK K N + ++A+S R IP + + +++S QD ++Q
Sbjct: 1078 DSVKMVTTSMSLPSKAGSKNNKHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQ 1134
Query: 1128 SQALLNVKDSNKEDRERMV-VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1186
SQAL N+KDSNKE+RER V VR+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+
Sbjct: 1135 SQALFNIKDSNKEERERRVLVRKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKR 1194
Query: 1187 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1246
Q+DG+E+LQKALPS RK++IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+
Sbjct: 1195 QIDGIELLQKALPSSRKEVIELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQS 1254
Query: 1247 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1306
Y LTE+EAA+FLPCL+EKSGHNIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNR
Sbjct: 1255 YMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNR 1314
Query: 1307 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
TRIECVD++G+ +DHHG E+SG LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+
Sbjct: 1315 TRIECVDIIGYFMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDV 1374
Query: 1367 WRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-V 1425
WRYVGKL+DAQ+SMLDDRFKWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ V
Sbjct: 1375 WRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAV 1434
Query: 1426 SQSVSGPTLMRRNYGHSELHVERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMK 1484
S+S++G + R N+G+S+ H ++PR +A+ + GP DW EALDI++ G PEQSVEGMK
Sbjct: 1435 SRSMAGSMISRENFGYSDAH----MVPRQMATATPGPADWREALDIVALGLPEQSVEGMK 1490
Query: 1485 VVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLM 1544
V+CHEL QA DPE SV+D+L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLM
Sbjct: 1491 VICHELTQAV-DPESSVLDDLIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLM 1549
Query: 1545 QTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKIL 1598
QTFQ KRLA+AV+E TLD+LITELLLWLLDERVP MDDGSQLLKALNVLMLKIL
Sbjct: 1550 QTFQIKRLAHAVKEGTLDNLITELLLWLLDERVPLMDDGSQLLKALNVLMLKIL 1603
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1610 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.979 | 0.797 | 0.736 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.645 | 0.511 | 0.294 | 6.1e-160 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.693 | 0.548 | 0.285 | 2.7e-159 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.692 | 0.548 | 0.285 | 4.4e-158 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.645 | 0.510 | 0.294 | 8.4e-157 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.648 | 0.513 | 0.288 | 1.9e-151 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.622 | 0.492 | 0.295 | 4e-145 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.496 | 0.449 | 0.292 | 8.6e-123 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.334 | 0.267 | 0.271 | 1.8e-110 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.316 | 0.335 | 0.313 | 6.8e-93 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5948 (2098.9 bits), Expect = 0., P = 0.
Identities = 1171/1591 (73%), Positives = 1312/1591 (82%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
PWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G LF+KTVADSNAPVQ+KALD
Sbjct: 16 PWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGHLFRKTVADSNAPVQEKALD 75
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVME 134
ALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD ME
Sbjct: 76 ALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTME 135
Query: 135 XXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLE
Sbjct: 136 KAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLE 195
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDV 254
LCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ V
Sbjct: 196 LCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVV 255
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS 314
G GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLAS
Sbjct: 256 GDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLAS 315
Query: 315 TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXX 374
TK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF
Sbjct: 316 TKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEK 375
Query: 375 XXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434
+V + LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS
Sbjct: 376 LKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETS 435
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494
+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+
Sbjct: 436 NKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKK 495
Query: 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554
KLSEMIAGSGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A AS
Sbjct: 496 KLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASFVRKSAASMLSGKRPAPSAQAS 554
Query: 555 KKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA 613
KK G KP KKDGS + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+
Sbjct: 555 KKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSS 614
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAAT 673
VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW+EKN Y+++T
Sbjct: 615 VWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISST 674
Query: 674 ATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK 733
A KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPK
Sbjct: 675 AAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPK 734
Query: 734 VLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793
VLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPD
Sbjct: 735 VLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPD 794
Query: 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXXLPREDISGK 853
IKGFL DVKPALLSALD EYEKNPFEGT PK+ V+ LPREDIS K
Sbjct: 795 IKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSVSTSTSSGGLDS-LPREDISTK 853
Query: 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 913
TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM
Sbjct: 854 ITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVM 913
Query: 914 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973
TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+
Sbjct: 914 QTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMI 973
Query: 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1033
PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE
Sbjct: 974 PYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAE 1033
Query: 1034 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTXXXXXXX 1087
CI EILR GQE IEKNLKDIQGPALAL+LE+++ +S+ GP
Sbjct: 1034 GCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKI 1093
Query: 1088 XXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVV 1147
NG K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VV
Sbjct: 1094 SKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVV 1148
Query: 1148 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207
RR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIE
Sbjct: 1149 RRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIE 1208
Query: 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267
VLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GH
Sbjct: 1209 VLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGH 1268
Query: 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327
NIEKVREKMREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI
Sbjct: 1269 NIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIG 1328
Query: 1328 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1387
G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKW
Sbjct: 1329 GLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKW 1388
Query: 1388 KVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVE 1447
K + ARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +E
Sbjct: 1389 KAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLE 1448
Query: 1448 RSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVK 1507
R+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVK
Sbjct: 1449 RTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVK 1508
Query: 1508 DADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQXXXXXXXXXX 1567
DAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+
Sbjct: 1509 DADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITE 1568
Query: 1568 XXXXXXXERVPHMDDGSQLLKALNVLMLKIL 1598
ERVP M+DGSQLLKALNVLMLKIL
Sbjct: 1569 LLLWLLDERVPRMEDGSQLLKALNVLMLKIL 1599
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 6.1e-160, Sum P(3) = 6.1e-160
Identities = 319/1085 (29%), Positives = 522/1085 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGMEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G RP R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGAPRPARFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +A + G + S A + K A++ G
Sbjct: 485 LKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRAAASGAAGDKD--TKDASAPKPG 541
Query: 545 KRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ APA+K GGP K A + G+G T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAVETKEMVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 599 VLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACVLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX-- 838
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGE 836
Query: 839 ---------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAAIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMGP +++ K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMGPNIKQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLN 1070
+ K N
Sbjct: 1075 KAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 2.7e-159, Sum P(3) = 2.7e-159
Identities = 331/1160 (28%), Positives = 549/1160 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKLVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + ++ VP A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPGRTATSGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ AP +K GGP K P+A GS + K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
PA + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I L
Sbjct: 720 MSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXX---- 838
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSISGTDEGEDG 838
Query: 839 -------XXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP
Sbjct: 839 DEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKIRKEGLDEVAGIINEA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
K N ++ S + S ++SS V P + + V A
Sbjct: 1077 KANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSVSSTVEPKPDPKKAKALGVSSKA 1136
Query: 1126 VQSQAL-LNVKDSNKEDRER 1144
+Q + K S KED ++
Sbjct: 1137 KSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 4.4e-158, Sum P(3) = 4.4e-158
Identities = 332/1161 (28%), Positives = 546/1161 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + ++++E+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K + +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAV 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELISE 252
E+ RWI +D ++ L + + KELE E V + +A RPTR +R++Q+ E E
Sbjct: 190 EIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALESVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 IKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ + + K + K + ++ +ND PEVRDAAF L K VG + + + +D
Sbjct: 425 RHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDK 484
Query: 491 VRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR- 546
++ +K+ SE + G A G ++ + + +P A+ + K + + K
Sbjct: 485 LKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPGRTAASGAAGDKDTKDISAPKPG 541
Query: 547 PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLI 602
P+ APA+K GGP K A G+G T K E E VEP E+S+E E + +++
Sbjct: 542 PLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVL 600
Query: 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXX 662
P + L S+ WKERL + ++ VE + + + LVR++ PGW E N
Sbjct: 601 PPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQM 660
Query: 663 XXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERL 722
+A F K + L G+ +++ D+K +A + +T +EA + E++
Sbjct: 661 KLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQV 719
Query: 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL 782
+ KNPK SE + W+ +A+++FG S L +K I K T L ++ A R A I L
Sbjct: 720 VSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTAAITL 778
Query: 783 LGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX----- 837
LG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 779 LGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGISKHSTSGTDEGEDG 838
Query: 838 ------XXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 891
LPR +IS K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 839 DEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP- 896
Query: 892 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951
GEL L+GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K +
Sbjct: 897 NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNN 956
Query: 952 MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011
+R L ++AW + + + + K R++L WL+++L L P
Sbjct: 957 VRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDL 1016
Query: 1012 HLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERI 1067
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1017 ILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKA 1076
Query: 1068 KLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDF 1124
K+N ++ + PT S ISS P + +
Sbjct: 1077 KVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDCISSSTEPKPDPKKAKAPGLSSK 1135
Query: 1125 AVQSQAL-LNVKDSNKEDRER 1144
A +Q + K S KED ++
Sbjct: 1136 AKSAQGKKMPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 8.4e-157, Sum P(3) = 8.4e-157
Identities = 319/1084 (29%), Positives = 514/1084 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L I D K + L KK V DSNA Q K L+
Sbjct: 11 PIDQKCEHKLWKARLNGYEEALKLFQKIDDEKSPEWSKYLGLIKKFVTDSNAVAQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAV--FMLWVELEAVDVFLDV 132
A +AY++ A AG+ EV + K +PK K V ++++E+E + +
Sbjct: 71 AALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAKELGVDICLMYIEIEKGEAVQEE 128
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +ALSEFG+KII K I+K+LP+LF+ +++ VR +K L
Sbjct: 129 LLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESREKAVRDEAKLLA 188
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQDKELGQELIS 251
+E+ RWI +D ++ L + + KELE E V VS A + TR +R++Q EL +
Sbjct: 189 VEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSAAPKQTRFLRSQQ--ELKAKFEQ 244
Query: 252 EDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ G +E D P++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 245 QQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 303
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 304 VEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALAAKCLAGLASGLRKKFGQYAGHV 363
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 364 VPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFI 421
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLER 483
+ + + K + K + ++ +ND PEVRDA F L K G + P
Sbjct: 422 ARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDAGFEALGTALKVAGEKAVNPFLA 481
Query: 484 SIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543
++KL R + +E + G + G P++ S K AA+
Sbjct: 482 DVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAGKAPALSGSAGDKEIKDAAAK-P 540
Query: 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEAPEDVE--PSEMSLEEIESRLGS 600
G P AP K GGP K S +G +K + PE E SE+S+E E + +
Sbjct: 541 G--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKGPETKEIFESELSIEVCEEKAAA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++PA + QL S WKERL ++ ++ VE ++ + + LVR++ PGW E N
Sbjct: 599 VLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMPCQALVRMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ ++V D+K ++A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKCGSNAKEAMTAIAEACQLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ F D KPALLS +DAE+EK + P + +
Sbjct: 777 TLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQGQTAPAPTRGISRHSGGSGDDGE 836
Query: 841 XXXX----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890
LPR DI K T LV + +WK+R E ++ V I+ +A K IQP
Sbjct: 837 EEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWKIRKEGLDEVTSIINDA-KFIQP 895
Query: 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950
GEL L+ RL DSNK LV TL L +A+AMGP +++ K + ++ LGD+K
Sbjct: 896 -NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGPNIKQHVKNLGIPVITVLGDSKN 954
Query: 951 HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
++R L ++AW + + + + K R++L WL+ +L L P
Sbjct: 955 NVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLADKLPTLRSVPSD 1014
Query: 1011 AHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILER 1066
L P + + D++ DVRK A+ + + G E + K LK + +LE+
Sbjct: 1015 LLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEKMAKATGKLKPTSKDQVLAMLEK 1074
Query: 1067 IKLN 1070
K N
Sbjct: 1075 AKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1095 (390.5 bits), Expect = 1.9e-151, Sum P(3) = 1.9e-151
Identities = 314/1089 (28%), Positives = 516/1089 (47%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + + I D K + L KK V DSNA VQ K L+
Sbjct: 11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLE 70
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVM 133
A + Y++ A AG+ EV + +K + K E + +++VE+E + + +
Sbjct: 71 AALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEEL 129
Query: 134 EXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTL 193
I+ + +ALSEFG+KII K I+K+LP+LF+ +D+ VR +K +
Sbjct: 130 LKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAI 189
Query: 194 ELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISE 252
E+ RW +D VK L + + KELE E V + +G +P+R +R++Q+ E E
Sbjct: 190 EIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQS 247
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
G D P++D YEL+D V+IL+ L K F++ ++A KW ERK+A+ + L
Sbjct: 248 AGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEVL 306
Query: 313 ASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXX 371
++ GD+ ++ + LKK++ D N+ + A + + LA GLR F +
Sbjct: 307 VKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTI 366
Query: 372 XXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 431
V ++L + + A+ L ++ EDV + NK P ++ T ++
Sbjct: 367 LEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSF 424
Query: 432 ETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEK 487
+ + + K + K + ++ +ND PEVRDAAF L K VG + P ++K
Sbjct: 425 RHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKSVNPFLADVDK 484
Query: 488 L--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544
L D ++ ++ E++ G +AT ++ G + S A + K + G
Sbjct: 485 LKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRAAASGAAGDKD--TKDVSGPKPG 541
Query: 545 KRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGS 600
P+ P +K GGP K + GS T K E E VEP E+S+E E + +
Sbjct: 542 --PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGLETKEIVEP-ELSIEVCEEKASA 598
Query: 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXX 660
++P + L S+ WKERL + ++ VE ++ + + LV+++ PGW E N
Sbjct: 599 VLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMPCQALVKMLAKKPGWKETNFQVM 658
Query: 661 XXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFE 720
+A F K + L G+ +++ D+K +A + +T +EA + E
Sbjct: 659 QMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAE 717
Query: 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780
++ + KNPK SE + W+ +A+++FG S L +K I K T L ++ A R + I
Sbjct: 718 QVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAI 776
Query: 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXX 840
LLG ++ +VGP ++ D KPALLS +DAE++K + P + +
Sbjct: 777 TLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGIAKHSTSATDEGE 836
Query: 841 XXXX-----------LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ 889
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQ
Sbjct: 837 DGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQ 895
Query: 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949
P GEL L+GRL DSNK LV TL L +A AMG + + K + ++ LGD+K
Sbjct: 896 P-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGANIRQHVKNLGIPVITVLGDSK 954
Query: 950 KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD 1009
++R L ++AW + + + + K R++L WL+++L L P
Sbjct: 955 NNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPT 1014
Query: 1010 AAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILE 1065
L P + + D++ DVRK A+ + + G E + K LK + +LE
Sbjct: 1015 DLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLE 1074
Query: 1066 RIKLNGASQ 1074
+ K N S+
Sbjct: 1075 KAKANMPSK 1083
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 4.0e-145, Sum P(3) = 4.0e-145
Identities = 314/1064 (29%), Positives = 515/1064 (48%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALD 74
P + + HK WK R + L + + + LG L KK V +SNA Q K L+
Sbjct: 11 PIDQKCEHKVWKARLSGYEEALKLFQKLDEKSPEWSKYLG-LIKKFVTESNAVAQLKGLE 69
Query: 75 ALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK--AQAVFMLWVELEAVDVFLDV 132
A +A+++ A AG+ EV + K +PK K + ++++E+E +V D
Sbjct: 70 AALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAKELGTEICLMYIEIEKAEVVQDE 127
Query: 133 MEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLT 192
+ I+ + +AL EFG+KII K ++K+LP+LF+ +++ VR +K L
Sbjct: 128 LIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVVKVLPKLFESREKAVRDEAKLLA 187
Query: 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEQD---KELGQE 248
+E+ RWI +D ++ L + + KELE E V V TA + R +R++QD K Q+
Sbjct: 188 VEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPATAPKQIRFLRSQQDLKAKFEQQQ 245
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
D G EE V ++D YEL++ V+IL+ L K F+E ++A KW ERK+A+
Sbjct: 246 AAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLPKD-FYEKIEAKKWQERKEALEA 302
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFX 367
+ L ++ GD+ ++ R LKK+I D N+ + A + + LA GLR F +
Sbjct: 303 VEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMAAKCLAGLATGLRKKFGTYAGLV 362
Query: 368 XXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427
V ++L + + A+ L ++ EDV + NK P ++ ++
Sbjct: 363 VPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NISEDVLAVMDNKNPSIKQQASLFL 420
Query: 428 TFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486
+ + + K V K + ++ +ND PEVRDAAF L K +G + + +
Sbjct: 421 ARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDAAFEALGTAMKVIGEKAVNPFLT 480
Query: 487 KLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTSGGSVPSVEA-SESSFVRKSAA 539
+D ++ +K+ E +I GG G + + + + P VEA +++S K +A
Sbjct: 481 DVDKLKLDKIKECADKVELIGKKGG----GGGEKKERPAAKASPPVEAPAKTSGPPKKSA 536
Query: 540 SMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 598
P AA KKG P PSAK + K E E +E +E+S E E +
Sbjct: 537 -------PAKAAGPPKKGKPAAAPSAK--------SKKAPETKEIIE-TELSPEVCEEKA 580
Query: 599 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXX 658
+++PA + L SA WKERL ++ ++ VE + + + LV+++ PGW E N
Sbjct: 581 AAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSEMPCQALVKMLAKKPGWKETNFQ 640
Query: 659 XXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFI 718
L A +F K ++ L G+ +++ D+K +A + LT EA +
Sbjct: 641 VMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDVKCGGNAKEALTAIGEACSLPWT 699
Query: 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778
E++ I KNPK +E + W+ +A+++FG + + +K I+ K T L ++ A R +
Sbjct: 700 AEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINVKGFINNVK-TALGATNPAVRTS 758
Query: 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP----KKT------- 827
I LLG ++ ++G ++ F D KPALLS +DAE+ K + P KK
Sbjct: 759 AIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKMQGQSPPAPTRGAKKAGAEEDGD 818
Query: 828 VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V LPR DIS K T +V + +WK+R E ++ V ++ EA K
Sbjct: 819 VADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDKNWKIRKEGLDEVAAVISEA-KF 877
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
IQ A GEL L+GRL DSNK LV TL L +A AMGP++++ K + ++ LGD
Sbjct: 878 IQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIAMGPSLKQHVKNLGIPVVTVLGD 936
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+K ++R + L+AW+ + + + + K R++L WLS++L L
Sbjct: 937 SKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLSEKLPTLRTV 996
Query: 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
P L P + D+S DVRK A+ + + G + + K
Sbjct: 997 PADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLGFDKMTK 1040
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 8.6e-123, Sum P(3) = 8.6e-123
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 265 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 324
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 325 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 383
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 442
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 503 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 559
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 560 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 615
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 616 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 675
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 736 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 844
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 965 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1023
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1074
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 1.8e-110, Sum P(4) = 1.8e-110
Identities = 153/563 (27%), Positives = 266/563 (47%)
Query: 17 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
EDR+ HKNWK R +L + + E GP FKK +AD N Q++AL+ L
Sbjct: 12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPL 71
Query: 77 IAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEX 135
A++ D ++A + K RP+ EK +L +E ++ + ++ +
Sbjct: 72 SAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLK 130
Query: 136 XXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195
+ + QAL FG K IP K ILK F+++D+ +R + L +E+
Sbjct: 131 GTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEI 190
Query: 196 CRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEQDKELGQELISEDV 254
RWIGK + ++ E + K L+ + + + A P + R+E K L S+ +
Sbjct: 191 YRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPAVPLKYTRSEAAKALANA--SKGI 247
Query: 255 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-TKLA 313
P +V EID Y L+ V+IL L S F+EG++A KW ER + + +L T L
Sbjct: 248 QAKP------EVVEEIDPYSLMTAVNILPKLT-SEFYEGLQAKKWQERSEQMDKLVTILT 300
Query: 314 STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXX 373
+T +I DF+E+C+ LKK++ DVN+ + +A+ +IG LA LR F+ +
Sbjct: 301 NTPKIETADFSELCKALKKILADVNVMIVQKAVVSIGLLADSLRGGFTSYVKPFITPILE 360
Query: 374 XXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433
+V +S+ T+ ++ ++L D+++++ ++++KVP ++ L ++ I
Sbjct: 361 KFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTATMQSKVPQIKQEVLVFICNSITN 419
Query: 434 SSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492
+ K A + KV K I ME LND +RD A AA+ +G R + + ++D ++
Sbjct: 420 TKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAFAALGGIIGERAMTPYLNQIDPIK 479
Query: 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552
K+ + + VAT + + + ++ SS +K AA+ + K + P
Sbjct: 480 AKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLPVSSSNKKPAAATGNSKSSSTTTP 535
Query: 553 ASKKGG----PVKPSAKKDGSGK 571
+ P PS+ D K
Sbjct: 536 TGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 6.8e-93, Sum P(3) = 6.8e-93
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 557 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 612
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 672
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 673 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 732
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 733 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 793 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 844
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 845 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1020
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1070
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7799 | 0.9875 | 0.8038 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7311 | 0.9838 | 0.7931 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1610 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 299 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 350
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 411 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 459 PEVRDAA 465
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 476
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1610 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.95 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.88 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.87 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.86 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.76 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.7 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.66 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.64 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.6 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.49 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.47 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.41 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.41 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.39 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.3 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.26 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.2 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.18 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.18 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.11 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.98 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.73 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.7 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.67 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.67 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.65 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.61 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.55 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.54 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.36 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.15 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.75 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.73 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.64 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.54 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.5 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.38 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.37 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.35 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.26 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.25 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.22 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.22 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.19 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.19 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.98 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.92 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.76 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.71 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.64 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.55 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.52 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.47 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.44 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.42 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.41 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.38 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.36 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 96.32 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.32 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.3 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.27 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.09 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.02 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.95 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.89 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.88 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.85 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.81 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.8 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.66 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 95.35 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.28 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 95.23 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.19 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.96 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 94.94 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.93 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 94.71 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.62 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.44 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 94.41 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 94.11 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.99 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 93.99 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 93.76 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 93.69 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.67 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 93.61 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 93.57 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 93.5 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 93.26 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 93.24 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 93.19 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 93.09 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 92.95 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.64 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 92.49 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 92.34 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 92.2 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 92.13 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 92.05 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 92.05 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 92.03 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 91.8 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 91.68 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 91.5 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 91.4 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.34 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 91.07 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 90.86 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 90.59 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 90.51 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 90.43 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.1 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 90.1 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 90.08 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 90.07 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 89.74 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 89.67 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 89.66 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 89.08 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 89.07 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 88.81 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 88.79 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 88.4 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 88.03 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 87.93 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 87.91 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 87.64 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 87.23 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 87.08 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 87.04 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 86.61 | |
| KOG4825 | 666 | consensus Component of synaptic membrane glycine-, | 86.54 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 85.93 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 85.65 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 85.53 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 85.44 | |
| KOG3961 | 262 | consensus Uncharacterized conserved protein [Funct | 85.12 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 85.03 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 84.87 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 84.48 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 84.18 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 84.16 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.8 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 83.79 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 83.77 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 83.73 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 83.67 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 83.5 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 83.37 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 83.14 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 83.03 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.95 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 82.81 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 82.51 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 82.41 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 81.99 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 81.36 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 81.34 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 80.76 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 80.74 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 80.71 | |
| PF11640 | 155 | TAN: Telomere-length maintenance and DNA damage re | 80.7 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=523.89 Aligned_cols=747 Identities=26% Similarity=0.305 Sum_probs=568.0
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHh-hcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000369 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1610)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l-~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~ 684 (1610)
....+.++.|+.|.++..++..........+.....+++.. ...++|+..|+++..-.+.++..=..
T Consensus 10 ~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~------------ 77 (815)
T KOG1820|consen 10 TDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRV------------ 77 (815)
T ss_pred cchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccc------------
Confidence 33448889999999999999988777544433333444433 22345777777766555544432111
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000369 685 CLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (1610)
Q Consensus 685 il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~ 764 (1610)
.+ ++...+++..+....+...+++.++.. ...|.|+....++..+..++.+||...+.++.+++.+.
T Consensus 78 -------~~-----~~~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~ 144 (815)
T KOG1820|consen 78 -------NI-----RDTKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVG 144 (815)
T ss_pred -------cc-----cCcchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCc
Confidence 11 222222333333333344455555554 47899999999999999999999998888888887776
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhh-cccHHHHHHHHHHHhcCCCC----CCCC----------------
Q 000369 765 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVV---------------- 823 (1610)
Q Consensus 765 ~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~-~lkp~ll~~L~~ef~k~~~~----~~~~---------------- 823 (1610)
.+ . +.+||.++.++++.+|+|.|..+..++. .-.+.++..+...+.+.... ..+.
T Consensus 145 ~l-~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~ 220 (815)
T KOG1820|consen 145 SL-A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQ 220 (815)
T ss_pred cc-c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhc
Confidence 54 3 8899999999999999999999887663 33444555555544443211 0000
Q ss_pred ---CCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHH
Q 000369 824 ---PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1610)
Q Consensus 824 ---p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L 900 (1610)
+.++.+...+....+.+..|.+||+||++++++.|...+.+++|++|+||++.+.+++++....+....++.+...+
T Consensus 221 ~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ 300 (815)
T KOG1820|consen 221 LEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILL 300 (815)
T ss_pred ccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHH
Confidence 00111100000000123457899999999999999999999999999999999999999753234555567888888
Q ss_pred HhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Q 000369 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1610)
Q Consensus 901 ~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L 980 (1610)
+.++.|+|.+|+..|+.+|+.||.+||..|.+|+..++|.|+.+++|+|..+|+++..|+++|+..+++..+.+.+.+++
T Consensus 301 ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~l 380 (815)
T KOG1820|consen 301 KIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEAL 380 (815)
T ss_pred HHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcCChhhHHHHHHHHHHHhccCCCC----CchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCC
Q 000369 981 TDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1056 (1610)
Q Consensus 981 ~~~~~~~~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~ 1056 (1610)
+++ ||+.|.+++.|+.+++..++.. .....+++.++...+|++.+||++|.+++.++++++|++.+.+++.+++
T Consensus 381 k~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 381 KGK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred cCC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 987 7999999999999999988742 2334555558899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1057 GPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1057 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
+..+..+.+-+.+.-.....+.+++++..+.....+..++ ......+++...|.+.+...+ +...+++.+ .+.
T Consensus 459 ~~~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~~~~-~~~ 536 (815)
T KOG1820|consen 459 KQDIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPEAAE-APK 536 (815)
T ss_pred cchhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcchhh-ccc
Confidence 8644444444433211111111122221111000000000 000000111111111110000 011111111 111
Q ss_pred cccCCCChHHHh----hhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHH
Q 000369 1132 LNVKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207 (1610)
Q Consensus 1132 ~~~~~~~k~~R~----~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~ 1207 (1610)
. ..+.+++|. +..+.+|++..|..+..+ +|...++......||+.||+.|.++++.++........+..+
T Consensus 537 ~--~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 610 (815)
T KOG1820|consen 537 L--QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTS 610 (815)
T ss_pred c--ccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccch
Confidence 1 245566665 456778888877655544 378899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcC
Q 000369 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY 1287 (1610)
Q Consensus 1208 ~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~ 1287 (1610)
+.|+.++|+++||+|+|+.+..+.++++...|..+...++.++..|...|.|++..+.|..++.+++.++.+.+....++
T Consensus 611 ~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~ 690 (815)
T KOG1820|consen 611 IQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVL 690 (815)
T ss_pred HHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHhcccCCchhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHH
Q 000369 1288 SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367 (1610)
Q Consensus 1288 ~~~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~ 1367 (1610)
...+.+|++.+++..||.++|.||+..+..++..-|.+...-.+.+..++....+.|..+|+++.+++...|.+.|+.+|
T Consensus 691 s~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (815)
T KOG1820|consen 691 SVLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSW 770 (815)
T ss_pred cccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHH
Confidence 99999999999999999999999999999999999998755567789999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhhhhh
Q 000369 1368 RYVGKLTDAQKSMLDDRFKWKVRE 1391 (1610)
Q Consensus 1368 ~~~g~l~~~~~~~l~er~kr~~~~ 1391 (1610)
++.+.+.+.++++++.+|++..+.
T Consensus 771 ~~~~~~~~~~~s~~~~~~~~~~~~ 794 (815)
T KOG1820|consen 771 KISILQADTDKSRIEKMFPKERRE 794 (815)
T ss_pred HHHHHhhHHHhhhHHHhcCccccc
Confidence 999999999999999999997663
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=444.24 Aligned_cols=749 Identities=19% Similarity=0.232 Sum_probs=502.2
Q ss_pred hhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhh-hHHHHHH
Q 000369 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AKEVCDA 97 (1610)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~~~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~-~~~v~~~ 97 (1610)
++..+.|+.|.++|.. ++.|+|...|+.+ .++..|....+.....- ....+-.
T Consensus 13 ~l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeecc
Confidence 3778888888877764 4567788899999 88888887765422211 2223444
Q ss_pred HHhhhcCC-ChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhh
Q 000369 98 IAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176 (1610)
Q Consensus 98 lveK~l~~-k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~l 176 (1610)
..++||.. ++.+++...++++.+...+..+.+++.+...+.-|.||..++++..+..++.+||...++++.+++.+..+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 56777774 78889999999888877788899999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-CCCcccchhhhhHhhhhhccccCCC
Q 000369 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVG 255 (1610)
Q Consensus 177 l~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~-~~p~r~~rs~~~~~~~~~a~~~~~~ 255 (1610)
+ |++||.++..++++||||+|.. ++.+++..-.+.++.++...+.+.... ....+..-+.+..........+...
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 9 9999999999999999999985 666665444455555555444332211 0011111111100000000000000
Q ss_pred CCCC--CCCCCCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHH
Q 000369 256 PGPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLK 331 (1610)
Q Consensus 256 ~~~~--~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~k--i~~~~~~~l~~~L~ 331 (1610)
.... ..........+|.||+++++||+++++ .+|...+.++||++|+|||+.+..++..++ +..+.++.+...++
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 0000 001111122379999999999999999 589999999999999999999999886655 44455556666666
Q ss_pred HHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHH
Q 000369 332 KLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS 411 (1610)
Q Consensus 332 ~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~ 411 (1610)
.+..|+|++|+..|++||+.||.+||..|.+|+..++|.+|++++|+|..+++++..|+++++.. +++.++++.|..+
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 66679999999999999999999999999999999999999999999999999999999999984 8999999999999
Q ss_pred hhcCChHHHHHHHHHHHHHHHhCChh-HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccH
Q 000369 412 VKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1610)
Q Consensus 412 l~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~ 490 (1610)
+++|||++|.+|..|+.+++...++. .....++.++|.+++..+|++++||.+|.++++++++++|++.++.++..+++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 99999999999999999999988743 23355789999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcch-hhhhhhccccCCCCCCCCCCCCCCCCCCC-CCCC---
Q 000369 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRPVSAAPASKKGGPVK-PSAK--- 565 (1610)
Q Consensus 491 ~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~-~~~~~~~s~~~~~~P~~~~~~~~~~~~~~-~~~~--- 565 (1610)
.-++.+.|.+...-.......++..+ ..++-+... .++...+ ..+.++... .++.|++ +.+.
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a-------~~~~~~~~~~~~~~~~~---~~~~~p~~~---~a~vps~~ss~~~~~ 526 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSA-------PDPQVEKLKKVVKVGLS---NFSGLPKNS---AASVPSKLSSANSSR 526 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCC-------CCccccccceecccccc---cCCCCCCCc---cccCCCccccccccc
Confidence 64555555443210000000000000 000000000 0000000 000000000 0001110 0000
Q ss_pred --CC--CCCCCc-CCcCCCCCC-----CCCCCC-CCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccc
Q 000369 566 --KD--GSGKQE-TSKLTEAPE-----DVEPSE-MSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1610)
Q Consensus 566 --~~--~~~~~~-~s~~~~~~~-----~~~~~~-~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~ 634 (1610)
+. +.+... .++...... .+.... ...++..+.....++......+.+.+.+.-.++++.+.....+...
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~ 606 (815)
T KOG1820|consen 527 KIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSK 606 (815)
T ss_pred CCcchhhccccccccccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhccccc
Confidence 00 000000 000000000 000001 1123444334455667777888999999999999998866544222
Q ss_pred c-chhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC----CchhhHHHHHHHHHhhhccch--hhHHHHHHHH
Q 000369 635 L-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLT 707 (1610)
Q Consensus 635 ~-~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~----~~~~~~~~il~~LveKlgd~K--~r~~a~~~L~ 707 (1610)
. ......++.|+. -+|.|+|..+....++++......... ......-...+.+..+.|..+ .+..-..+..
T Consensus 607 ~~~~~~~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~ 684 (815)
T KOG1820|consen 607 EYTSIQDLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISE 684 (815)
T ss_pred ccchHHhhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhh
Confidence 2 122345666764 368999999999888888765543211 010001111122222444432 2333334444
Q ss_pred HHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 708 ~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
...++.+.......+.+.+ ..++-..|.+++..+...+..-|...+............ ..+.+..+|..+..++...|
T Consensus 685 ~s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 762 (815)
T KOG1820|consen 685 ASFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPF 762 (815)
T ss_pred hhhhhccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhccccc-ccccchhhhhhhhccccccc
Confidence 5555566555666666665 788888999999888887776666543322233333333 67788999999999999999
Q ss_pred hhhChhHHHhhhcccHHHHHHHHHHHhcCC
Q 000369 788 KFVGPDIKGFLADVKPALLSALDAEYEKNP 817 (1610)
Q Consensus 788 ~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~ 817 (1610)
.+.|.....+.....+.+...++++|.+-.
T Consensus 763 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 763 DFLPDPSWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred ccccchHHHHHHHhhHHHhhhHHHhcCccc
Confidence 999999988888888899999999987653
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-22 Score=241.82 Aligned_cols=927 Identities=16% Similarity=0.181 Sum_probs=534.3
Q ss_pred ChhhhhcCCchhHHHHHHHHHHHHhhccCCC-CchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHH
Q 000369 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDP-KDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1610)
Q Consensus 15 pl~erl~~k~WK~R~~ayeel~~~~~~~~~~-~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~ 93 (1610)
-|.|++++++-..|..|..+|.+.++...-. ++..+.+....+-|.+.|+|..||..|+.|+..++...+.. ....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHHH
Confidence 5789999999999999999999999753211 11224566777889999999999999999999999776552 2344
Q ss_pred HHHHHHhhhcCCChhhHH-HHHHHHHHHHhhh------hhhhHHHHHHHHhhcCChh------hHHHHHHHHHHHHHHhC
Q 000369 94 VCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE------AVDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFG 160 (1610)
Q Consensus 94 v~~~lveK~l~~k~~~k~-~a~~~ll~~~e~~------~~~~v~~~L~~~l~~KnpK------v~~~~l~~l~~~l~~fG 160 (1610)
++..|..+.+.++.+.|+ .++.+.+...++. -...|+..+++.+..-+.+ +...+++.+...+.+||
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 555555555777888888 5677778777774 1246788888777766665 99999999999999999
Q ss_pred CCCcChh-hHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhH---HHhhhC-hHHHHHHHHHHHHh---c---CC
Q 000369 161 AKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKM-RDTMKKELEVELVN---V---SG 229 (1610)
Q Consensus 161 ~~~~~~k-~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~---~l~~~l-k~~q~kele~~f~~---~---~~ 229 (1610)
.-..+.. .+++.+..-++.....||..|+.++..+..+.+.++... .|.++| ++.|..++...+.- + .|
T Consensus 166 ~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 166 TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 9666654 478888888999999999999999999988887654322 222333 23333333332221 1 11
Q ss_pred C--------CCC--cccchhhhh--Hh---------------hhhhc--------------cccCCCCCCCC-CCC-CCC
Q 000369 230 T--------ARP--TRKIRAEQD--KE---------------LGQEL--------------ISEDVGPGPSE-EST-ADV 266 (1610)
Q Consensus 230 ~--------~~p--~r~~rs~~~--~~---------------~~~~a--------------~~~~~~~~~~~-~~~-~~~ 266 (1610)
. ..| ..|..+.+. .+ -+.+- -+=.++-..+. +++ +..
T Consensus 246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~ 325 (1233)
T KOG1824|consen 246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMF 325 (1233)
T ss_pred chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhh
Confidence 0 011 011100000 00 00000 00000000000 000 000
Q ss_pred CCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHH
Q 000369 267 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEA 345 (1610)
Q Consensus 267 ~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A 345 (1610)
.+|.+.|+. ++-|+.-++-.|+.|++|++.+..++ +...+.+.-|..+...|..+++|---+|....
T Consensus 326 ~ed~eDde~------------~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 326 LEDEEDDEQ------------DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred hhccccchh------------ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHH
Confidence 011111110 12333445667999999999999976 55555566677888889999997777777777
Q ss_pred HHHHHHHHHHhhh----------------cch-hh----hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh----cCCC
Q 000369 346 IQAIGNLARGLRT----------------HFS-GS----SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA----GCLN 400 (1610)
Q Consensus 346 ~~~i~~La~~L~~----------------~f~-~~----~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~----~~~~ 400 (1610)
+++.-.+.+..+. .|+ .+ ...++..+=+.+++++...+.....-|..++.. ...+
T Consensus 394 f~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~ 473 (1233)
T KOG1824|consen 394 FHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQH 473 (1233)
T ss_pred HHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhc
Confidence 7777776654332 121 22 334555555556666655666666666666654 1244
Q ss_pred hHhhHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 401 LVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 401 l~~vl~~l~~~l~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
+..++|.|.-.+.+|+ .+.|..++.|+...+..+++..+.++++.+.|.+..++.|+.+.|-..|.-....+.+++..
T Consensus 474 ~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 474 IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc
Confidence 5677888888888887 68999999999999999999999999999999999999999999988888888888877653
Q ss_pred h------hHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCC--CCCCC
Q 000369 479 R------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGK--RPVSA 550 (1610)
Q Consensus 479 ~------~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~--~P~~~ 550 (1610)
. ...+++..+-....++++..... -.|+.-+-+-++.. .-...
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~D-----------------------------qeVkeraIscmgq~i~~fgD~ 604 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSD-----------------------------QEVKERAISCMGQIIANFGDF 604 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhccccc-----------------------------HHHHHHHHHHHHHHHHHHhhh
Confidence 1 13455555554444444321000 00000000000000 00000
Q ss_pred CCCCCCCCCCCCCCC-----CCCC--CCCcC-CcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHH
Q 000369 551 APASKKGGPVKPSAK-----KDGS--GKQET-SKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAI 622 (1610)
Q Consensus 551 ~~~~~~~~~~~~~~~-----~~~~--~~~~~-s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~ 622 (1610)
-+ .--+..- .-+. .+..+ +..+... ..+..++.. ....++ -+++..-|.-.+-+-|++.+
T Consensus 605 ----l~--~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia--~S~l~i~l~---~~l~~i-l~~l~~flrK~~r~lr~~~l 672 (1233)
T KOG1824|consen 605 ----LG--NELPRTLPILLERLGNEITRLTAVKALTLIA--MSPLDIDLS---PVLTEI-LPELASFLRKNQRALRLATL 672 (1233)
T ss_pred ----hh--hhhHHHHHHHHHHHhchhHHHHHHHHHHHHH--hccceeehh---hhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 0000 00000 0000000 000000100 000000 02333333333444555555
Q ss_pred HHHHHHHHhccccchhHHHHHHHhhcCCC-CCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchhhHH
Q 000369 623 SSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAH 701 (1610)
Q Consensus 623 ~~L~~~~~~~~~~~~~~~~lv~~l~~~p~-~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~ 701 (1610)
..+...++...... ..+.+--.|...|+ +.|+..++.+.++.++..++...+...-...+.+++.++.-+..+-++..
T Consensus 673 ~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 673 TALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch
Confidence 55555555432211 11222222222233 57899999999999999988765443233445667777766666655555
Q ss_pred HHHHHHHHHhhh----Chhh----------------------------------------------HHHHHHhhhhc-CC
Q 000369 702 AMKCLTTFSEAV----GPGF----------------------------------------------IFERLYKIMKD-HK 730 (1610)
Q Consensus 702 a~~~L~~l~e~~----~~~~----------------------------------------------v~~~l~~~l~~-~k 730 (1610)
+..++..+.++. .++. +...+...+.+ +.
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCC
Confidence 554444443321 0110 01111111000 11
Q ss_pred CHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHH
Q 000369 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810 (1610)
Q Consensus 731 npKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~ 810 (1610)
+-.++.-++-.+.++-..++. .....+-..+..+ |++++.+|+.||...+|.+.. |. +..|| |-++.+|+
T Consensus 832 ~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksAAs~ALGsl~v--gn-l~~yL----pfil~qi~ 901 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSAASYALGSLAV--GN-LPKYL----PFILEQIE 901 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHHHHHHhhhhhc--Cc-hHhHH----HHHHHHHh
Confidence 112222222222222111111 1123444556676 999999999999999999863 32 22222 22333332
Q ss_pred HH----------HhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHH
Q 000369 811 AE----------YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKI 880 (1610)
Q Consensus 811 ~e----------f~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~l 880 (1610)
.+ |..+- .+++ . +-..|- ..+|..-|++.++..+--.|.-..|+++.+
T Consensus 902 sqpk~QyLLLhSlkevi-----------~~~s----v----d~~~~~---v~~IW~lL~k~cE~~eegtR~vvAECLGkL 959 (1233)
T KOG1824|consen 902 SQPKRQYLLLHSLKEVI-----------VSAS----V----DGLKPY---VEKIWALLFKHCECAEEGTRNVVAECLGKL 959 (1233)
T ss_pred cchHhHHHHHHHHHHHH-----------HHhc----c----chhhhh---HHHHHHHHHHhcccchhhhHHHHHHHhhhH
Confidence 21 11100 0000 0 000111 112445566667766666788888889888
Q ss_pred HHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Q 000369 881 LEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1610)
Q Consensus 881 l~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL 960 (1610)
+.- . -..|.+.|+.++....++.+..++..+......-...++++.+..+..++..+.|....||+.|..++
T Consensus 960 ~l~-----e---pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 960 VLI-----E---PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HhC-----C---hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 752 2 27799999999987777888888888888888778889999999999999999999999999999999
Q ss_pred HHHHHhcC--chhhHHHHHHHHhcCc-C-------------------ChhhHHHHHHHHHHHhccCCCCCchhhhHHHHH
Q 000369 961 DAWLAAVH--LDKMVPYVTTALTDAK-L-------------------GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS 1018 (1610)
Q Consensus 961 ~~~~~~~~--l~~ll~~l~~~L~~~~-~-------------------~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~ 1018 (1610)
++.+++-+ +..++|.+.+.|.+.. + .-+.|+.+++.+..+++..-..-+..+++..+.
T Consensus 1032 nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~ 1111 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVE 1111 (1233)
T ss_pred HHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 99998866 5678888887776431 0 112566666666655555443344455555555
Q ss_pred HhcCCCCHHHHHHHHHHHHHH
Q 000369 1019 IAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
.+|+|. .|++--..-.+..+
T Consensus 1112 ~GL~Dh-ydiKmlt~l~l~rL 1131 (1233)
T KOG1824|consen 1112 DGLEDH-YDIKMLTFLMLARL 1131 (1233)
T ss_pred hhcchh-hHHHHHHHHHHHHH
Confidence 566664 55554444443333
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-16 Score=199.58 Aligned_cols=878 Identities=16% Similarity=0.158 Sum_probs=471.2
Q ss_pred hhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcC--CChhhHHHHHHHHHHHHhhhh-
Q 000369 49 RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEA- 125 (1610)
Q Consensus 49 ~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~--~k~~~k~~a~~~ll~~~e~~~- 125 (1610)
.|.+...++-..+++.|..-+|.||-.|..+....+.....+..++. .+..+|++ +.+ +|-.|...+..|++...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~-~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL-RLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH-HHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 57777888888999999999999999999988887665555555444 56688898 456 99988888888876531
Q ss_pred -hh--hHHHHHHH--------HhhcCChhhHHHHHHHHHHHHHHhCCCCcC--hhhHHHhhhhhhCCC--CHHHHHHHHH
Q 000369 126 -VD--VFLDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKG 190 (1610)
Q Consensus 126 -~~--~v~~~L~~--------~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~--~k~il~~l~~ll~~~--d~~VR~~a~~ 190 (1610)
.. .-+..+++ ....-+-+....++.+|.+++...+. .+. +..++....++.++. |..+|..|..
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 21 11223333 33445556678888888888877654 222 345666666667665 6779999999
Q ss_pred HHHHHHHhhCCchhhH--HHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCC--CCCCCCCCC
Q 000369 191 LTLELCRWIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPG--PSEESTADV 266 (1610)
Q Consensus 191 l~~ely~~lG~~~~~~--~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~--~~~~~~~~~ 266 (1610)
+++.+-.+ .+...|. .+...|-++.++...+. ..++ .+++.. ++
T Consensus 272 ~ivs~~e~-Ap~~~k~~~~~~~~lv~~~l~~mte~------------------------------~~D~ew~~~d~~-de 319 (1075)
T KOG2171|consen 272 FLVSLSEY-APAMCKKLALLGHTLVPVLLAMMTEE------------------------------EDDDEWSNEDDL-DE 319 (1075)
T ss_pred HHHHHHHh-hHHHhhhchhhhccHHHHHHHhcCCc------------------------------ccchhhcccccc-cc
Confidence 99999888 2211110 01111222221111000 0000 000000 01
Q ss_pred CCCCCCccC-----------CCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHc
Q 000369 267 PPEIDEYEL-----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLI 334 (1610)
Q Consensus 267 ~~~id~~d~-----------~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l 334 (1610)
+++-+||.+ +++..|+..+= +.+...+.+.+|++|++||..|..+. ..++...+.+..|++.+...+
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc
Confidence 111223322 12222222221 33445678999999999999999988 345555567889999999999
Q ss_pred cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH-HHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------hHhhHH
Q 000369 335 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP-VLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVE 406 (1610)
Q Consensus 335 ~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp-~Ll~klkdk-k~~V~~aa~~al~ai~~~~~~~------l~~vl~ 406 (1610)
+|.+..|+..||++||.++..+.+.++.+....+| .|+..+.+. ++.|..++..|+..+... |.. ++.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 99999999999999999999999999977666666 555555444 457888899999988876 422 445555
Q ss_pred -HHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCC----hHHHHHHHHHHHHHHHHhCChhH
Q 000369 407 -DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT----PEVRDAAFSVLAAIAKSVGMRPL 481 (1610)
Q Consensus 407 -~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~----~~VR~aA~~al~~l~~~~g~~~~ 481 (1610)
.+...+++.++.+|..++..++.+..... ..+.+|.+.++|.+.++|...+ .++|-...+|++.++..+|.+.|
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 23334568889999999999998776544 3477899999999999985444 68888889999999999998877
Q ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhcccc--CCCCCCCC----CCCCC
Q 000369 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASML--SGKRPVSA----APASK 555 (1610)
Q Consensus 482 ~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~--~~~~P~~~----~~~~~ 555 (1610)
.++...|=... ++.-++......|.. +..-..-+.+. -|..-.+- -|+--
T Consensus 557 ~~~a~eliqll-------~~~~~~~~~~dd~~~-----------------sy~~~~warmc~ilg~~F~p~L~~Vmppl~ 612 (1075)
T KOG2171|consen 557 LPLAEELIQLL-------LELQGSDQDDDDPLR-----------------SYMIAFWARMCRILGDDFAPFLPVVMPPLL 612 (1075)
T ss_pred hHhHHHHHHHH-------HhhcccchhhccccH-----------------HHHHHHHHHHHHHhchhhHhHHHHHhHHHH
Confidence 77765443211 111111111111100 00000000000 00000000 00000
Q ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcC-ChHHHHHHHHHHHHHHHhccc
Q 000369 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSA-VWKERLEAISSLRQQVEAVQN 634 (1610)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~-~Wk~Rl~a~~~L~~~~~~~~~ 634 (1610)
++...++ ...++.++.++...+.-+-+. ..+.++ +...|-.++++-.
T Consensus 613 ~ta~~~p-----------------------~~~~~d~~d~e~~~~~~~~e~-~~~~~~e~~~I~Tsvl~eK~-------- 660 (1075)
T KOG2171|consen 613 KTARLDP-----------------------DVALSDEEDEEEEQDLDGWEV-VELGDKENIGIRTSVLDEKE-------- 660 (1075)
T ss_pred HhhccCC-----------------------cccCcCchhhhhccccccchh-hccCCceeeeeeehhHHHHH--------
Confidence 0000000 011112222222211111111 111111 2222222222211
Q ss_pred cchhHHHHHHHhhc-CCCCCccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhh
Q 000369 635 LDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 712 (1610)
Q Consensus 635 ~~~~~~~lv~~l~~-~p~~~DsN~~V~~~~l~~l~~l~~~~-~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~ 712 (1610)
..++.|+.+=.. +-+|-.=--+|....+ . ....+ ..-.+.+...++|.++...--.-.+..+ -+..+.
T Consensus 661 --~A~~~Lv~~a~~lk~~F~pYve~v~~l~v--~--~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~--~l~~l~-- 730 (1075)
T KOG2171|consen 661 --TACEALGEYAKELKEAFAPYVEQVVELMV--P--LLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE--YLKQLW-- 730 (1075)
T ss_pred --HHHHHHHHHHHhhhhhhhhHHHHHHHHHH--H--HHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH--HHHHHH--
Confidence 112222222100 0011110001111000 0 00000 0001223334444444221100000000 111111
Q ss_pred hChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHH---HHhcCCCCCcHHHHHHHHHHHHHHHhh
Q 000369 713 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF---CKDTGLQSSAAATRNATIKLLGALHKF 789 (1610)
Q Consensus 713 ~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~---l~~~gl~~~n~~VR~aA~~ll~~Ly~~ 789 (1610)
.+++..++..+..-..+-+..+.++.+.+.++.+|..+++...+-.. +...-+++. .|. ...
T Consensus 731 ---~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~---~~~---------~~r 795 (1075)
T KOG2171|consen 731 ---EAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHF---KRM---------QDR 795 (1075)
T ss_pred ---HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHH---HHH---------Hhh
Confidence 12344445554445677788999999999999999766653332222 211101100 000 000
Q ss_pred hChhHH-HhhhcccHHH---HHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCC
Q 000369 790 VGPDIK-GFLADVKPAL---LSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (1610)
Q Consensus 790 ~G~~l~-~~l~~lkp~l---l~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~ 865 (1610)
-+.+.. ++-.+....+ =..|.+.+.++... -++. .++ +..|- ...+-|.+...+.++
T Consensus 796 ~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~-------l~k~-------~k~--~f~p~---f~~~~p~iv~~l~~~ 856 (1075)
T KOG2171|consen 796 QEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAA-------LAKA-------LKG--SFLPF---FENFLPLIVKLLKSK 856 (1075)
T ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHH-------HHHH-------ccc--cccHH---HHHHHHHHHHHHhcC
Confidence 000000 0000000000 11122222222100 0000 000 01111 112334455555555
Q ss_pred -ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 866 -DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 866 -~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
-|. |.=|+-.+.+++....+...+. +..++..+...+.|+...|++.|.--+|.+|.--|..+.+.+...+|.+...
T Consensus 857 ~~~~-r~~av~~~~d~ie~~~~a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 857 KTVA-RQWAVCIFDDLIEGCGEASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred CcHH-HHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 577 9999999999998654444443 4678888889999999999999999999999999999999999999999888
Q ss_pred hCCCc---HHHHHHHHHHHHHH---HHhc----CchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC---C--Cc
Q 000369 945 LGDNK---KHMRECTLTVLDAW---LAAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F--PD 1009 (1610)
Q Consensus 945 l~D~k---~~Vr~aa~~aL~~~---~~~~----~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~---~--~~ 1009 (1610)
+.... ..-+.+..+++.++ +.+. .+++++|.+...|-... +-+.-..+..+|..++++... . ..
T Consensus 935 iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~ 1013 (1075)
T KOG2171|consen 935 LQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQ 1013 (1075)
T ss_pred HcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcc
Confidence 76433 23344444444444 4443 36778887777764211 223446678888888877644 1 12
Q ss_pred hhhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHh-ChHHHHHHhhcCChhHHHHHHHHH
Q 000369 1010 AAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1067 (1610)
Q Consensus 1010 ~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l 1067 (1610)
..+.+.. +...+.+.+-+-|..+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1014 ~ip~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1014 NIPKILSVCAESLADKKIEPRSTLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred cchHHHHHHHhhhhccCCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 3333333 444555554444444433333222222 446677788999999998888765
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=222.56 Aligned_cols=211 Identities=27% Similarity=0.399 Sum_probs=148.6
Q ss_pred cCccchhhhhhccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHccCcCHHHHHHHHHHHHHHHHHhh
Q 000369 284 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 357 (1610)
Q Consensus 284 kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~--ki~~~~~~~l~----~~L~~~l~D~n~~v~~~A~~~i~~La~~L~ 357 (1610)
.+. +.|+++..+.+|++|.+||+.|+.++.+. .....+|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 46778788999999999999999988543 11222232222 356677889999999999999999999999
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhh-HHHHHHHhhcCChHHHHHHHHHHHHHHHhCC-
Q 000369 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 435 (1610)
Q Consensus 358 ~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~v-l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~- 435 (1610)
..|++|+..++|.|+++++++|+.|++++..|+.+++.+ +.....+ ++.+..+++||||++|.+++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999997 3314566 7888889999999999999999999999998
Q ss_pred -hhHHH--HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHH
Q 000369 436 -KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497 (1610)
Q Consensus 436 -~~~l~--~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~ 497 (1610)
...+. ..++.+++.+.++++|++++||++|+++|+.+++++|+++ ..++..||+..||.++
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYLE 228 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccCC
Confidence 33333 2358899999999999999999999999999999999986 7888999998887653
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-15 Score=190.34 Aligned_cols=839 Identities=17% Similarity=0.182 Sum_probs=505.5
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhH
Q 000369 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFL 367 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~-~~~l 367 (1610)
+...+-+.+=..|++|-+.+..+...++ +...|...+. -.|..++..|+-.+-.+..+.-+....- -..+
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4445667777789999999988764432 5667777777 7788889999888888877755555433 3456
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc-CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh
Q 000369 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1610)
Q Consensus 368 lp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~-~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 445 (1610)
...||..+ +|..+.||.+....+..++++. ...-.++++-+.++.++.|++.|+.++..|..+....+. .+..+++.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~ 159 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLDD 159 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHHH
Confidence 66677766 8999999999999999999871 113467888889999999999999999999887766543 35568899
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC-ChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCC
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVP 524 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g-~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~ 524 (1610)
+.+.+.+|+.|+...||-+|..+++++..... +....+.+..+-|.-..-+.+.+...
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~--------------------- 218 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG--------------------- 218 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc---------------------
Confidence 99999999999999999999999999998885 33322333332222222222111000
Q ss_pred CCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcH
Q 000369 525 SVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPA 604 (1610)
Q Consensus 525 ~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~ 604 (1610)
.++
T Consensus 219 ------------------------------------------------------------------d~~----------- 221 (1075)
T KOG2171|consen 219 ------------------------------------------------------------------DDD----------- 221 (1075)
T ss_pred ------------------------------------------------------------------chH-----------
Confidence 000
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcccc-chhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC-------
Q 000369 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK------- 676 (1610)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~-~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~------- 676 (1610)
.=..+++.|.+++...... .+..+.++.+....-+=++-+-.+.+.+|+++..+++..+.
T Consensus 222 ------------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 222 ------------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred ------------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 0001122222222221111 01112222221111112444556888999999988876432
Q ss_pred CchhhHHHHHHHHHhhhccc--------------hhhHHHHHHHHHHHhhhChhhHHHHHHhhh---hcCCCHhHHHHHH
Q 000369 677 FPKKCVVLCLLGISERVADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGI 739 (1610)
Q Consensus 677 ~~~~~~~~il~~LveKlgd~--------------K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l---~~~knpKv~~~~l 739 (1610)
+..+.+..++-.+.+-..|. -....|.++|..++-..++..|+..+++.+ ..+.+|+-|.++|
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23333333333333333331 134578889999999999999988887764 5789999999999
Q ss_pred HHHHHHHHHhCCCC-CChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhh-hcccHHHHHHHHHHHhcCC
Q 000369 740 LWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNP 817 (1610)
Q Consensus 740 ~~l~~~i~~fg~~~-l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l-~~lkp~ll~~L~~ef~k~~ 817 (1610)
..|+.+.+..+-.- =++..+++.+... |.|++|.||.+|.+++|.|-..+++.+..+. +-++|++...+++.
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~----- 443 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST----- 443 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc-----
Confidence 99999987443210 1456788888885 9999999999999999999988888876554 44455544444331
Q ss_pred CCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHcc-ccCCCCChhhH
Q 000369 818 FEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN-KRIQPAGTGEL 896 (1610)
Q Consensus 818 ~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~-~~i~~~~~~eL 896 (1610)
.+-++-.-|.-.+-...+++. ..|.|. +..|
T Consensus 444 -----------------------------------------------~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~l 475 (1075)
T KOG2171|consen 444 -----------------------------------------------QNVRVQAHAAAALVNFSEECDKSILEPY-LDGL 475 (1075)
T ss_pred -----------------------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHH
Confidence 122333334444444444432 234444 3667
Q ss_pred HH-HHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHhcCchh
Q 000369 897 FG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN----KKHMRECTLTVLDAWLAAVHLDK 971 (1610)
Q Consensus 897 ~~-~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~----k~~Vr~aa~~aL~~~~~~~~l~~ 971 (1610)
+. .|.-.+....+.|+.+++.+|+.+|.+.+..|.+|...++|.+.+.+... ...+|.-..+|+..+...+|=++
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 77 34344456678888999999999999999999999999999998887643 35688888888888888888777
Q ss_pred hHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Q 000369 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1610)
Q Consensus 972 ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~ 1051 (1610)
+.|.-.+.++ .+... . . ...|.+...|.........++++.|++ |.++
T Consensus 556 F~~~a~eliq--------------ll~~~-~--~--------------~~~~~dd~~~sy~~~~warmc~ilg~~-F~p~ 603 (1075)
T KOG2171|consen 556 FLPLAEELIQ--------------LLLEL-Q--G--------------SDQDDDDPLRSYMIAFWARMCRILGDD-FAPF 603 (1075)
T ss_pred hhHhHHHHHH--------------HHHhh-c--c--------------cchhhccccHHHHHHHHHHHHHHhchh-hHhH
Confidence 6664333332 22211 1 0 012334456788888888899999975 6777
Q ss_pred hhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1052 LKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1052 l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
++..=|.-++.... +......+ ....... ..-.+. .. ..-.+. + .
T Consensus 604 L~~Vmppl~~ta~~--~p~~~~~d-----~~d~e~~--~~~~~~--------e~--~~~~~~-------------e---~ 648 (1075)
T KOG2171|consen 604 LPVVMPPLLKTARL--DPDVALSD-----EEDEEEE--QDLDGW--------EV--VELGDK-------------E---N 648 (1075)
T ss_pred HHHHhHHHHHhhcc--CCcccCcC-----chhhhhc--cccccc--------hh--hccCCc-------------e---e
Confidence 75443332221100 00000000 0000000 000000 00 000000 0 0
Q ss_pred cccCCCChHHHh----h----hhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcC----
Q 000369 1132 LNVKDSNKEDRE----R----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALP---- 1199 (1610)
Q Consensus 1132 ~~~~~~~k~~R~----~----~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~---- 1199 (1610)
+-+.++.-++.. . -...|-.|. |.-|++ ... .+-...|.-.-..|.+|++.|-..+.
T Consensus 649 ~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~-pYve~v---~~l-------~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 649 IGIRTSVLDEKETACEALGEYAKELKEAFA-PYVEQV---VEL-------MVPLLKFYFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHhhhhhhh-hHHHHH---HHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 001111111000 0 011222233 222221 111 12233333333456677666655433
Q ss_pred ---CChhHHHHHHHHHHHHHHHhc-cCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhC-------C-
Q 000369 1200 ---SIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSG-------H- 1267 (1610)
Q Consensus 1200 ---~~~~~~~~~lDlllk~~~~r~-~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~G-------d- 1267 (1610)
..+..+.+-.+-+++-+..-+ .+.-+.|+..+|+.+...+..+.... |.+.+...++-.+..++- |
T Consensus 718 A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~--L~~~~~~~~~~~~~~~~l~~~~~~~~r 795 (1075)
T KOG2171|consen 718 ACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNC--LNEDGLEALLGGLLAQLLQHFKRMQDR 795 (1075)
T ss_pred HhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCccc--CCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333433343334444444433 45789999999999999888887654 777777766666554431 1
Q ss_pred --------ChHHHHH-----------HHHHHHHHHHhcCCc------cccHHHHHhcccCCchhhHHHHHHHHHHHHHhh
Q 000369 1268 --------NIEKVRE-----------KMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH 1322 (1610)
Q Consensus 1268 --------~k~~vr~-----------~v~~il~~~~~~~~~------~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~~ 1322 (1610)
--+..++ .+.+++-.+.+.+-. ..++|++..-+.++++=-|+=.+.-++.+|+..
T Consensus 796 ~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~ 875 (1075)
T KOG2171|consen 796 QEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGC 875 (1075)
T ss_pred hhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 1111122 222222222222222 247888887776666555888888899999998
Q ss_pred CCCcccc-cchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcChHHHHHhhcCCHHHHHHH
Q 000369 1323 GAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1381 (1610)
Q Consensus 1323 G~~~~~~-~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~~g~l~~~~~~~l 1381 (1610)
|-..... ..-++.+..++.|.++.||.+|--.++.+-.+.|+.--..+..+.+..-.++
T Consensus 876 ~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~i 935 (1075)
T KOG2171|consen 876 GEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVL 935 (1075)
T ss_pred ccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 8765322 2346999999999999999999999999999999873333333344443333
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-18 Score=191.48 Aligned_cols=207 Identities=21% Similarity=0.326 Sum_probs=141.6
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCC----hhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChh
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 929 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~----~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~ 929 (1610)
+...|.+...+.+|+.|.+|++.|+.++.+..+.-.+.. +.++...+...+.|.|..|+..||.+++.++..+|..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 455566666889999999999999999986311111111 2233346667889999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC-
Q 000369 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1610)
Q Consensus 930 ~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-l~~l-l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~- 1006 (1610)
|++|+..++|.++++++|+++.||++|..||.+++.+++ ...+ ++.+..++.++ ||.+|.+++.|+...+..++.
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccch
Confidence 999999999999999999999999999999999999999 5666 67777777776 899999999999999999982
Q ss_pred CCc------hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHH
Q 000369 1007 FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1610)
Q Consensus 1007 ~~~------~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i 1063 (1610)
... +..++..+..+++|++++||++|+.++..+++++|+.+ ...+..|+|..++.+
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 23455558899999999999999999999999999986 557799999888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=174.86 Aligned_cols=516 Identities=17% Similarity=0.178 Sum_probs=338.9
Q ss_pred hcCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhhCC-CCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHH
Q 000369 138 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1610)
Q Consensus 138 ~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~-~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q 216 (1610)
.+..+.+....+.+...++.++|-+.+ ..+++..-..++| .+.++|+....+...+.+|+... +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 667778888888888899999998643 2333333333332 27889999888888887777431 22222
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhcc
Q 000369 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1610)
Q Consensus 217 ~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s 296 (1610)
.-++..|+... +|+...+..- +..-..-. .. . +..+...++ +...+.++.
T Consensus 96 -~~~~~~~~~~~---tps~~~q~~~---------~~~l~~~~----~~-----~---~~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEELD---TPSKSVQRAV---------STCLPPLV----VL-----S---KGLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhcC---CCcHHHHHHH---------HHHhhhHH----HH-----h---hccCHHHHH-----HHHHHHhcc
Confidence 23334444332 3432221100 00000000 00 0 000111111 345566788
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHH-HHHHHHHHHHHhhhcchhhhhhHHHHHHHHh
Q 000369 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1610)
Q Consensus 297 ~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~-A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl 375 (1610)
.+..+|+.+...+..+.++.-+....-..++..|.+.+.|.+....++ +..+.......||+.|+||...++|.+|.++
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999999987766665444578899999999998888885 7888888889999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHh-cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh
Q 000369 376 KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1610)
Q Consensus 376 kdkk~~V~~aa~~al~ai~~~-~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l 454 (1610)
+|+-+.||+++..|.++++.. +..++..+++.++.++....|+.|..++..+. ++..+.+.++..+++.++|.+.+.|
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHH
Confidence 999999999999999999986 33567889999999998889999999999998 6777777788899999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhh
Q 000369 455 NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1610)
Q Consensus 455 ~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~ 534 (1610)
+|++++||++|.+|+-.++.++.+..+.++++.|- +++.. |+..+
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~------------------ 349 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYT------------------ 349 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccch------------------
Confidence 99999999999999999999999988888876543 23211 11000
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCC
Q 000369 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1610)
Q Consensus 535 ~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~ 614 (1610)
++.--+. +. +.-...+ ++-..+++-|-+.++|....
T Consensus 350 ~e~~~~L-~~---------------------------------ttFV~~V----------~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 350 PECLDSL-GA---------------------------------TTFVAEV----------DAPSLALMVPILKRGLAERS 385 (569)
T ss_pred HHHHHhh-cc---------------------------------eeeeeee----------cchhHHHHHHHHHHHHhhcc
Confidence 0000000 00 0000011 11112234455555555544
Q ss_pred hHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhc
Q 000369 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1610)
Q Consensus 615 Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlg 694 (1610)
...+..++..+. .+..+++. +.-....+..++|++=..+-
T Consensus 386 t~~kr~t~~Iid---------------------------------------Nm~~LveD-p~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 386 TSIKRKTAIIID---------------------------------------NMCKLVED-PKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred chhhhhHHHHHH---------------------------------------HHHHhhcC-HHHHhhhHHHHhhHHHHHhc
Confidence 443333222222 12222211 11112344555666555554
Q ss_pred cc--hhhHHHHHHHHHHHhhhCh---hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHH-HHHHhcCC
Q 000369 695 DI--KTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI-DFCKDTGL 768 (1610)
Q Consensus 695 d~--K~r~~a~~~L~~l~e~~~~---~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li-~~l~~~gl 768 (1610)
|+ -+|..+..+|..+.|..+. ..+...+...+..+|.-+-+.++++.+.+++...|...+ ..++ +.+.....
T Consensus 426 d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~~~ 503 (569)
T KOG1242|consen 426 DAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANASS 503 (569)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHHhh
Confidence 43 4677777777666665443 445666777766788888899999999999988887532 1222 22222223
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcC
Q 000369 769 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1610)
Q Consensus 769 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~ 816 (1610)
....+.+|..-+.++..+-...|..+..|+.++.+.+++.+.+.-+..
T Consensus 504 ~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 504 VLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred ccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 445667999999999888888888999999888888888887654443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-09 Score=130.02 Aligned_cols=517 Identities=15% Similarity=0.187 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCChHhhHHHHHHHhhcC--Ch
Q 000369 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK--VP 417 (1610)
Q Consensus 341 v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~-~~~~l~~vl~~l~~~l~~K--np 417 (1610)
+..++|..++.+-..+|.-.-++...++..++-.+.-....||.-+..|+..+..+ +..-+..+++++..+|.+. +.
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~ 228 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMS 228 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchH
Confidence 56677777777777778777778888888888889999999999999999988876 1123567788888888643 34
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh---cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHH
Q 000369 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 494 (1610)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l---~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~k 494 (1610)
.+|.. ...|..+....+ ..+..+++.++|.+.+.+ +..+.+.|+...++++.|....+.+ +.|+.+.+-..-.+
T Consensus 229 ~~rt~-Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e-i~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 229 ATRTY-IQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE-ILPHVPEIINLCLS 305 (1233)
T ss_pred HHHHH-HHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh-hcccchHHHHHHHH
Confidence 44432 233333333222 235567789999999998 8899999999999999999888754 57777766543333
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000369 495 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 574 (1610)
Q Consensus 495 ki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1610)
+|. - . |.-. ...+ + . ..+
T Consensus 306 yis----Y----D----PNy~--------yd~~--e------D-------------------------ed~--------- 323 (1233)
T KOG1824|consen 306 YIS----Y----D----PNYN--------YDTE--E------D-------------------------EDA--------- 323 (1233)
T ss_pred Hhc----c----C----CCCC--------CCCc--c------c-------------------------hhh---------
Confidence 322 1 0 1000 0000 0 0 000
Q ss_pred CcCCCCCCCCC-CCCCCHHHHH----HHH-------------------hccCcHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000369 575 SKLTEAPEDVE-PSEMSLEEIE----SRL-------------------GSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (1610)
Q Consensus 575 s~~~~~~~~~~-~~~~s~ee~~----~~~-------------------~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~ 630 (1610)
...++.+|-+ ..++|+||-. .++ -.-++|.++.++.+..-..|.+.++.+...+.
T Consensus 324 -~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 324 -MFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred -hhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 0000000000 1122322100 000 00012333444333333333333333332221
Q ss_pred hcc-------------ccch---------hHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000369 631 AVQ-------------NLDQ---------SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1610)
Q Consensus 631 ~~~-------------~~~~---------~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~ 688 (1610)
.-. +.+. ..-.+++.+.+ .+++...+-.+..|..|..++...++....+...++|+
T Consensus 403 qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~--qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpg 480 (1233)
T KOG1824|consen 403 QTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK--QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPG 480 (1233)
T ss_pred cCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH--HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchh
Confidence 100 0000 00112222221 12233333445677777777776676666778889999
Q ss_pred HHhhhccch----hhHHHHHHHHHHHhhhChhhHHHHHHh-------hhhcCCCHhHHHHHHHHHHHHHHHhCC----CC
Q 000369 689 ISERVADIK----TRAHAMKCLTTFSEAVGPGFIFERLYK-------IMKDHKNPKVLSEGILWMVSAVEDFGV----SH 753 (1610)
Q Consensus 689 LveKlgd~K----~r~~a~~~L~~l~e~~~~~~v~~~l~~-------~l~~~knpKv~~~~l~~l~~~i~~fg~----~~ 753 (1610)
++-.+.|.- .+..+.-.|....-..+|+ +|....+ ......=+|+-.|+|..+.++++-.-. ..
T Consensus 481 I~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~-~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~ 559 (1233)
T KOG1824|consen 481 IIYSLNDKSSSSNLKIDALVFLYSALISHPPE-VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS 559 (1233)
T ss_pred hhhhcCCccchHHHHHHHHHHHHHHHhcCChh-hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence 998888842 2222322333322233332 2222222 223466789999999999998874322 12
Q ss_pred CC----hHhHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccc
Q 000369 754 LK----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1610)
Q Consensus 754 l~----~k~li~~l~~~-gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~ 828 (1610)
++ ++.++....+. --.+++.+||+.|+.|++.+-..+|+.+..++...-|.+++.+..|
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE---------------- 623 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE---------------- 623 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch----------------
Confidence 33 44555443322 1467899999999999999998888655554433333222222221
Q ss_pred cCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCC--CCChhhHHHHHHhcccc
Q 000369 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--PAGTGELFGGLRGRLYD 906 (1610)
Q Consensus 829 r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~--~~~~~eL~~~L~~~L~D 906 (1610)
-.|..|+..+--|... .-.|. +. ++++...|..-+.-
T Consensus 624 ---------------------------------------iTRl~AvkAlt~Ia~S-~l~i~l~~~-l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 624 ---------------------------------------ITRLTAVKALTLIAMS-PLDIDLSPV-LTEILPELASFLRK 662 (1233)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHhc-cceeehhhh-HHHHHHHHHHHHHH
Confidence 1344555555555432 12222 22 36666666666655
Q ss_pred ccHhHHHHHHHHHHHHHHHhChhHHHh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHH
Q 000369 907 SNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTA 979 (1610)
Q Consensus 907 sn~~v~~~al~~l~~la~~lg~~~~~~-~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~ 979 (1610)
.+..++..++.++..+.+..+..+..+ +..++-.+...+.++...|.+-|..++.+++..-+ -..+++.+...
T Consensus 663 ~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~l 742 (1233)
T KOG1824|consen 663 NQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRL 742 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHH
Confidence 666778888999999999998887765 45577778888899999999999999999887643 35577778888
Q ss_pred HhcC
Q 000369 980 LTDA 983 (1610)
Q Consensus 980 L~~~ 983 (1610)
++++
T Consensus 743 l~Sp 746 (1233)
T KOG1824|consen 743 LRSP 746 (1233)
T ss_pred hhCc
Confidence 8865
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-12 Score=149.67 Aligned_cols=691 Identities=15% Similarity=0.174 Sum_probs=413.5
Q ss_pred ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH----hhhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000369 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 322 ~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~----L~~~f-~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~ 396 (1610)
++.++.+.|...+.....+....|+.++..+++. +..++ .+....++|.++.-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3456666666666522223356666666555553 33333 256889999999999999999999999999987653
Q ss_pred c----CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 397 G----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 397 ~----~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
. ..+++.+++.+..--.+.+|.||...+..+..+++..+ ..+.+++..++..+.....|.|.+|--.|++-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 1 13466777777766678899999999999998888654 346688899999999999999999977777766666
Q ss_pred HHH-hCChhHHHhhhhccHHHHHHHH-----HHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCC
Q 000369 473 AKS-VGMRPLERSIEKLDDVRRNKLS-----EMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKR 546 (1610)
Q Consensus 473 ~~~-~g~~~~~~~l~~Ld~~~~kki~-----e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 546 (1610)
+.. +....+.||+.+|-|.....+. ..+-+. .+-+..-| .++ ...|
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~-~eeD~~vp---------------Dre------------eDIk 335 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKN-NEEDESVP---------------DRE------------EDIK 335 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcC-ccccccCC---------------chh------------hhcc
Confidence 643 3456678888887775443222 000000 00000000 000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCC---CCCHHHHHH----HHhccCc--------HHHHHHhh
Q 000369 547 PVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS---EMSLEEIES----RLGSLIP--------ADTVGQLK 611 (1610)
Q Consensus 547 P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~s~ee~~~----~~~~ll~--------~~l~~~L~ 611 (1610)
|-- .|+...+.+.-. ...-.+++++-... .+...-+.+ .++.+++ |-+.+.|.
T Consensus 336 PRf----------hksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRF----------HKSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chh----------hhchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 110 011111000000 00000000000111 111111222 2233444 44556888
Q ss_pred cCChHHHHHHHHHHHHHHHh-ccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHH
Q 000369 612 SAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGI 689 (1610)
Q Consensus 612 s~~Wk~Rl~a~~~L~~~~~~-~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~-~~~~~~~~~~il~~L 689 (1610)
+.+|+.|.+|+-.|..+.++ |+-..+....++.+|. +.+.|+-+-|..-.+=+|..+..-. ..-....+..++.++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~--~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLL--SLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHH--HHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999887 5443334444555543 1345554444443333333332211 111335677888999
Q ss_pred Hhhhccc--hhhHHHHHHHHHHHhhhChhhH------HHHHHhhh--hcCCCHhHHHHHHHHHHHHHHHhCCCC--C--C
Q 000369 690 SERVADI--KTRAHAMKCLTTFSEAVGPGFI------FERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSH--L--K 755 (1610)
Q Consensus 690 veKlgd~--K~r~~a~~~L~~l~e~~~~~~v------~~~l~~~l--~~~knpKv~~~~l~~l~~~i~~fg~~~--l--~ 755 (1610)
+.++-|. |++++|..++..+-|..+.+.| +.+++... -++||-.+.-.++..|+.-+...=.+. + -
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999885 5899999999998887776543 44443332 248999999888888887773211110 1 1
Q ss_pred hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHH---HHhcCCCCCC-CCCCcc-ccC
Q 000369 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA---EYEKNPFEGT-VVPKKT-VRA 830 (1610)
Q Consensus 756 ~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~---ef~k~~~~~~-~~p~r~-~r~ 830 (1610)
+.++++.-. . +.|+++++=- -.+|+..+..-+|.+|.+|-..+=..-...|++ ...++..... -.|-|. +-.
T Consensus 562 mPPLi~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 562 MPPLIEKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred ccHHHHHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 123333322 4 7888877543 356677777778887776654433333333332 2223322110 011111 000
Q ss_pred ccCc-----CCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000369 831 SEST-----SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1610)
Q Consensus 831 ~~~~-----~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~ 905 (1610)
+-+. ++-++....++-+.+ |..-++.-+.|.--.+|..+.--++.+...+...+.|.. .+++..|-.-++
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-ADFLPILGANLN 713 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHhhcCC
Confidence 0000 000011122232222 334456677899999999999999999987767788874 888888887777
Q ss_pred cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHH
Q 000369 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVT 977 (1610)
Q Consensus 906 Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k--~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~ 977 (1610)
-.+..+.-.|+-.+|+|+..+|.+..+|+..++-.++.-++-++ ..+-+...-++..+...++ ++.++..-.
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc 793 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWC 793 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHH
Confidence 77888999999999999999999999999999988887766433 3455555555555554443 222222222
Q ss_pred HHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHH---HHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhc
Q 000369 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK---PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1610)
Q Consensus 978 ~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~---pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1610)
..+++=+ .-+.|..++.-+...+.-.+.. +..... -.+....+...++|..-++.|..+...+|+..-..++..
T Consensus 794 ~sl~~i~-DneEK~sAFrG~c~mi~vNp~~--vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~q 870 (885)
T KOG2023|consen 794 TSLRNID-DNEEKESAFRGLCNMINVNPSG--VVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQ 870 (885)
T ss_pred HHhcccc-cchhHHHHHHHHHHheeeCchh--hhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 3333211 1235777777776655444432 221111 234455677799999999999999999999999999999
Q ss_pred CChhHHHHHHHH
Q 000369 1055 IQGPALALILER 1066 (1610)
Q Consensus 1055 L~~~~~~~i~~~ 1066 (1610)
++|..+..+.+.
T Consensus 871 f~P~~~erl~a~ 882 (885)
T KOG2023|consen 871 FPPPLKERLQAF 882 (885)
T ss_pred CChhHHHHHHHH
Confidence 999887776654
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=158.05 Aligned_cols=387 Identities=16% Similarity=0.182 Sum_probs=264.7
Q ss_pred hHHHHHHHHHhhhccc---hhhHHHHHHHHHHHhhhChhhHHHHHHhhhhc---CCCHhHHHHHHHHHHHHHHHhCCC--
Q 000369 681 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVS-- 752 (1610)
Q Consensus 681 ~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~---~knpKv~~~~l~~l~~~i~~fg~~-- 752 (1610)
|...-+..++.|-|-. .++......+..+..++.+.+..- +++.+.+ .-.||-|...+++++...++|...
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 4444445555554432 234444556666777777766655 6665533 458899999999999999987643
Q ss_pred CCChHhHHHHHHhcCCCC----C-cHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCC-CCCCC-
Q 000369 753 HLKLKDLIDFCKDTGLQS----S-AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK- 825 (1610)
Q Consensus 753 ~l~~k~li~~l~~~gl~~----~-n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~-~~~p~- 825 (1610)
..+.+..-...+++ +.+ . ...+-......++.++-.+-.+|...++.+.|.......+..+.+..+. .|.|.
T Consensus 139 s~~t~~~~~s~rkm-~~~~~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKM-FPWMFDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhc-cccccCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 23333333333332 221 1 2234455566777777677778999899999988888777666554221 11111
Q ss_pred -c--cc-cCccCc-----C--------CC---------CCC--------------CCCCCCcccc-ccccchHHHhhcCC
Q 000369 826 -K--TV-RASEST-----S--------SV---------SSG--------------GSDGLPREDI-SGKFTPTLVKSLES 864 (1610)
Q Consensus 826 -r--~~-r~~~~~-----~--------~~---------~~~--------------~~d~~pr~dI-s~~l~~~ll~~l~d 864 (1610)
+ +. +.+... + .. +.+ ..|.+++..+ ...+..+++.++++
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 00 000 0111222111 11233466677766
Q ss_pred C-ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHH
Q 000369 865 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1610)
Q Consensus 865 ~-~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll 942 (1610)
. .-..|++|+.+|..++.+....++...|++|+..+.+.|.| .+......|+++|+.|+++-...|..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 5 78899999999999998766677777799999999999999 688899999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC--Cc-hhhhHHHHH
Q 000369 943 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PD-AAHLLKPAS 1018 (1610)
Q Consensus 943 ~~l~D~k~-~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~-~~~ll~pl~ 1018 (1610)
++-+|+.+ .+|.|+..|+..+..+.+... +..+...+.+.. ...-..+++++.++++..... .. +.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999665 566666666777777776554 344555555432 223467788999999988652 12 334444588
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCC
Q 000369 1019 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1610)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~ 1072 (1610)
++++..++.|||.|..||.+++..+|.+.|.+++..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999754
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=148.03 Aligned_cols=351 Identities=18% Similarity=0.176 Sum_probs=251.2
Q ss_pred CCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcC-CChhhHHHHHHHHHHHH--
Q 000369 45 PKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV-- 121 (1610)
Q Consensus 45 ~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~-- 121 (1610)
..||....+...+-.-+.-.-..+|+....++..++-......+ +-+..++.++++ ++..-+..+.-.+--++
T Consensus 89 ~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g 164 (569)
T KOG1242|consen 89 IVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNG 164 (569)
T ss_pred ccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC
Confidence 34443333333334445666777888888888777655432222 223333445566 45555554444444433
Q ss_pred ---hhhhhhhHHHHHHHHhhcCChhhHH-HHHHHHHHHHHHhCCCCcC-hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHH
Q 000369 122 ---ELEAVDVFLDVMEKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1610)
Q Consensus 122 ---e~~~~~~v~~~L~~~l~~KnpKv~~-~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1610)
+......+++.|.++..+|++.... +++.+.......-|...-| +-+++|.+...|+|..+.||++|...+..+.
T Consensus 165 ~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 165 LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 2234567889999999888775554 5666666666666764333 5678888889999999999999887766665
Q ss_pred HhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCC
Q 000369 197 RWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELV 276 (1610)
Q Consensus 197 ~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~ 276 (1610)
+.+.+-.++..+
T Consensus 245 ~~~~~~aVK~ll-------------------------------------------------------------------- 256 (569)
T KOG1242|consen 245 RCLSAYAVKLLL-------------------------------------------------------------------- 256 (569)
T ss_pred HhcCcchhhHhh--------------------------------------------------------------------
Confidence 555432221111
Q ss_pred CcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH
Q 000369 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 355 (1610)
Q Consensus 277 ~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~ 355 (1610)
| .....+.+.+|+++..+++-+..+. ..|+..+....++++.|.+++.|+.+.|+..+..|+..+...
T Consensus 257 ---------p--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 257 ---------P--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred ---------h--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 0 1111222338999999999999877 455555555789999999999999999999999999999988
Q ss_pred hhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000369 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1610)
Q Consensus 356 L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~--~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~ 433 (1610)
... +-+..++|.|++.+.|.+..+.++...-..+=|-+ ...+++-++|.+..++...+..+|..++..+.....-
T Consensus 326 idN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 326 IDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred hcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 875 45888999999999999977765554444332222 2356778899999999999999999999998888777
Q ss_pred C-ChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000369 434 S-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1610)
Q Consensus 434 ~-~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~ 481 (1610)
+ .+..+.++++.++|.+.+.+.|+.|+||..+.++|+.+.+..|+..+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 7 56778899999999999999999999999999999999999998764
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-10 Score=136.25 Aligned_cols=569 Identities=18% Similarity=0.194 Sum_probs=334.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcC
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~K 415 (1610)
|.....+.+.-..|..|++..|=. ..+..+=--+..+...||+-...|...++.+ .+++.+++.|...+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 444455666666777666643311 1122222223455667888777888888876 78899999998888876
Q ss_pred -ChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC---hhHHHhhhhccHH
Q 000369 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDDV 491 (1610)
Q Consensus 416 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~---~~~~~~l~~Ld~~ 491 (1610)
+|+-|.........+..-.+-+ ...+++.++.++-++|.|....||--+.-++.++.+..+- +.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999998887776555444444 3467899999999999999999999999999999988663 3343333322111
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcch-hhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000369 492 RR----NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKK 566 (1610)
Q Consensus 492 ~~----kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~-~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~ 566 (1610)
.+ +-+..+++..|---|-.. ++ ..+ .++. .+....+
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~e--ya~yyTre---vmlil~r-------------------- 643 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AE--YASYYTRE---VMLILIR-------------------- 643 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HH--HHHHhHHH---HHHHHHH--------------------
Confidence 00 001111111000000000 00 000 0000 0000000
Q ss_pred CCCCCCcCCcCCCCCCCCCCCCCCHHHHH-------HHH-------hccCcHHHHHHhhcCChHHHHHH----HHHHHHH
Q 000369 567 DGSGKQETSKLTEAPEDVEPSEMSLEEIE-------SRL-------GSLIPADTVGQLKSAVWKERLEA----ISSLRQQ 628 (1610)
Q Consensus 567 ~~~~~~~~s~~~~~~~~~~~~~~s~ee~~-------~~~-------~~ll~~~l~~~L~s~~Wk~Rl~a----~~~L~~~ 628 (1610)
++...+||.. .+. ..++..+++..++.+=|..|.++ +.+|...
T Consensus 644 -------------------Ef~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~t 704 (1172)
T KOG0213|consen 644 -------------------EFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDT 704 (1172)
T ss_pred -------------------hhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHH
Confidence 0000011111 111 12344677788888889988887 3333222
Q ss_pred HHhc-cccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHhhhccchhhHH-HHH
Q 000369 629 VEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAH-AMK 704 (1610)
Q Consensus 629 ~~~~-~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~K~r~~-a~~ 704 (1610)
.-.. ... .+.+.+-+.+. .++|-+.|-.....+++..++.+.+ ++..+....++.+++-.+...-+-+. ...
T Consensus 705 tv~ia~Kv-G~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~ 780 (1172)
T KOG0213|consen 705 TVEIAAKV-GSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLL 780 (1172)
T ss_pred HHHHHHHh-CchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhh
Confidence 1111 111 12234444443 4788888888888888888888765 35566666677777666554322222 223
Q ss_pred HHHHHHhhhCh------hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHH----HHhcCCCCCcHH
Q 000369 705 CLTTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF----CKDTGLQSSAAA 774 (1610)
Q Consensus 705 ~L~~l~e~~~~------~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~----l~~~gl~~~n~~ 774 (1610)
.+-.++..++. ..++..++..+ ++|+|+||+.++..++.+..-.... .-..++.. +-.. ++...|+
T Consensus 781 gfg~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc--~ee~~m~~lGvvLyEy-lgeeypE 856 (1172)
T KOG0213|consen 781 GFGTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTC--GEEKLMGHLGVVLYEY-LGEEYPE 856 (1172)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhc--cHHHHHHHhhHHHHHh-cCcccHH
Confidence 33444444332 23445555554 8999999999998887765321110 00011111 1111 2333333
Q ss_pred HHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCcccccccc
Q 000369 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854 (1610)
Q Consensus 775 VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l 854 (1610)
|--.-+..+..+|..+|-. |. .|| -.||...|
T Consensus 857 vLgsILgAikaI~nvigm~---------------------km---~pP------------------------i~dllPrl 888 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMT---------------------KM---TPP------------------------IKDLLPRL 888 (1172)
T ss_pred HHHHHHHHHHHHHHhcccc---------------------cc---CCC------------------------hhhhcccc
Confidence 3333333333333322211 00 111 01232223
Q ss_pred chHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 855 ~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
+| .|.++.-|+-...++-++.|+..+..++....+--++--|...|+-.|+.++..|.+++|.|+++.|+.
T Consensus 889 tP----ILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----- 959 (1172)
T KOG0213|consen 889 TP----ILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----- 959 (1172)
T ss_pred hH----hhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-----
Confidence 43 455666777788888898888754343433223335556667778889999999999999999999975
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC-CCchhhh
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-FPDAAHL 1013 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~-~~~~~~l 1013 (1610)
.++-.+++.|+-+.-.-|....-++..+++.|++=.++|.|..-...+ +..+..++|.-|.-.|+..+. +.+..-.
T Consensus 960 -dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~FeyigemskdYiya 1036 (1172)
T KOG0213|consen 960 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEYIGEMSKDYIYA 1036 (1172)
T ss_pred -HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHHHHHHhhhHHHH
Confidence 788899999998888888888889999999999988999888777766 345678888888777776654 3455666
Q ss_pred HHH-HHHhcCCCCHHHHHHHHHHHHHH
Q 000369 1014 LKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1014 l~p-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
+.| +-.+|.|++.--|..|..++.-+
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 677 45699999999999887765433
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-11 Score=151.19 Aligned_cols=574 Identities=18% Similarity=0.195 Sum_probs=349.8
Q ss_pred HhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh-hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000369 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1610)
Q Consensus 402 ~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~ 480 (1610)
.-+.+.+...+.+.||..|++.+-||-.+++++++ ....-.+++|..++...|.|.|.=+.+.|.+.|+.++..-+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34455566778899999999999999999998762 23344568899999999999999999999999998887644322
Q ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000369 481 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 560 (1610)
Q Consensus 481 ~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~ 560 (1610)
-..+.+.| .+ ...+|. + .+..+ ... ..-.+.++. |+.|
T Consensus 897 k~~LV~sL----~~---tl~~Gk---r----~~~~v------------s~e--TelFq~G~L-g~Tp------------- 934 (1702)
T KOG0915|consen 897 KKSLVDSL----VN---TLTGGK---R----KAIKV------------SEE--TELFQEGTL-GKTP------------- 934 (1702)
T ss_pred HHHHHHHH----HH---HHhccc---c----cccee------------ccc--hhcccCCcC-CCCC-------------
Confidence 11122111 11 111110 0 00000 000 000000000 1111
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCC-CHHHHHHHHhccCcHHHHHHhh-----cCChHHHHHHHHHHHHHHHhc-c
Q 000369 561 KPSAKKDGSGKQETSKLTEAPEDVEPSEM-SLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEAV-Q 633 (1610)
Q Consensus 561 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-s~ee~~~~~~~ll~~~l~~~L~-----s~~Wk~Rl~a~~~L~~~~~~~-~ 633 (1610)
+ .+.+ |.-|+.+.++++-.|+++.++- +..|.-|+-|.-.+..+.+.. .
T Consensus 935 ------~------------------Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~ 990 (1702)
T KOG0915|consen 935 ------D------------------GGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE 990 (1702)
T ss_pred ------C------------------CCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH
Confidence 1 1122 5699999999999999987653 367999999999999887663 2
Q ss_pred ccchhH-HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccc--hhhHHHHHHHHHHH
Q 000369 634 NLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFS 710 (1610)
Q Consensus 634 ~~~~~~-~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~ 710 (1610)
...++. +.+-|..+. --|++..|++.+-++|..++.......+.++..++..|+..|++. ++|+++.-+|..+.
T Consensus 991 kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLL 1067 (1702)
T ss_pred hhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 332332 233333321 269999999999999999998655677789999999999999996 78999988888777
Q ss_pred hhhChhhH-------HHHHHhhhhcCCCHhHH---HHHHHHHHHHHHHhCCC--CCC----hHhHHHHHHhcCCCCCcHH
Q 000369 711 EAVGPGFI-------FERLYKIMKDHKNPKVL---SEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAA 774 (1610)
Q Consensus 711 e~~~~~~v-------~~~l~~~l~~~knpKv~---~~~l~~l~~~i~~fg~~--~l~----~k~li~~l~~~gl~~~n~~ 774 (1610)
.--+.+.+ +..+++.+ ++-.--|| ..++..+++++-..+.. +.. +..+++++..-|.-++-++
T Consensus 1068 ~g~~~~~~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1068 QGRPFDQVKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred cCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 65444443 44444443 22222233 34566666666544431 112 2346677654456688999
Q ss_pred HHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHH-HhcCCCCCC------CCCCccccCccCcCCC-CCCCCCCCC
Q 000369 775 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE-YEKNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLP 846 (1610)
Q Consensus 775 VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~e-f~k~~~~~~------~~p~r~~r~~~~~~~~-~~~~~d~~p 846 (1610)
||..++.++..|-++.|..+++|+.+|.|.++..+..- -....+-.. ....-..|.+.+..+. -...++.++
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999887665431 000000000 0000011111111000 001123344
Q ss_pred ccccc--cccchHHHhhcCCC-ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHH
Q 000369 847 REDIS--GKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA 923 (1610)
Q Consensus 847 r~dIs--~~l~~~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la 923 (1610)
-.|++ .+++|.+.+.+... .--.|.....-+-.+.......++|.- |.++.++...+.|-|..++..-...++.++
T Consensus 1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 44443 45666666655333 455566655555555555556778864 999999999999999999999999999999
Q ss_pred HHhCh-hHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcCcCChhhHHHHHHHHHHH
Q 000369 924 SAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1610)
Q Consensus 924 ~~lg~-~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~--~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1610)
..-.+ .+.++.+.++..++....+.++........-.+...+.. ....++|.++=..... ....+++++-+ +
T Consensus 1306 k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee---~Ka~q~Lw~dv--W 1380 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE---EKANQELWNDV--W 1380 (1702)
T ss_pred hcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH---HHHHHHHHHHH--H
Confidence 98777 478888888888887776655332222222111111111 1466888666554321 01123333222 1
Q ss_pred hccCCCCCc-----hhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHHH----HhChHHHHHH
Q 000369 1001 LTGLSGFPD-----AAHLLKPAS-IAMTDKSSDVRKAAEACIVEILR----AGGQETIEKN 1051 (1610)
Q Consensus 1001 l~~~~~~~~-----~~~ll~pl~-~~L~D~~~dVR~aA~~~l~~l~~----~~G~~~~~~~ 1051 (1610)
.+-.+.+.. ...++.+++ ..+++....+|+.+..++..+.. .++++.+.+.
T Consensus 1381 ~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl 1441 (1702)
T KOG0915|consen 1381 AELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKL 1441 (1702)
T ss_pred HHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHH
Confidence 112222221 233444544 35688889999999888876653 3454444433
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-08 Score=135.64 Aligned_cols=772 Identities=14% Similarity=0.131 Sum_probs=448.5
Q ss_pred hhhhhhHhhhcC-CcHHHHHHHHHHHHHHHHHhchhhhhhh---HHHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhhhh
Q 000369 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV 126 (1610)
Q Consensus 52 ~~~~~~~k~v~D-sN~~~q~~~leal~~~v~~~~~~~~~~~---~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~e~~~~ 126 (1610)
....++.+.-.. ++...++.++..|..|.+...++ .+.. .+.+|.||.= |. +.+.+|..|..++..+...+..
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~l-L~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSL-LRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 344566666544 47899999999999998876442 2222 3467777765 54 6788888888777777654321
Q ss_pred ------hhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHh-----CCCCcChhhHHHhhhhhhCCCC---HHHHHHHHHHH
Q 000369 127 ------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLT 192 (1610)
Q Consensus 127 ------~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~f-----G~~~~~~k~il~~l~~ll~~~d---~~VR~~a~~l~ 192 (1610)
...+..|...+++-++..+..|..+|..+.... +.+++--.-.+|.|..++.+.+ +.|++.+...+
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 244556666677778888888888887765421 1111112335667777777653 23333332222
Q ss_pred HHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCC
Q 000369 193 LELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDE 272 (1610)
Q Consensus 193 ~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~ 272 (1610)
..|..+-+. ....+. +. + .+
T Consensus 172 ~nLs~~~en--~~~~II------------------------------------------ea---G-----------aV-- 191 (2102)
T PLN03200 172 RNLCGSTDG--FWSATL------------------------------------------EA---G-----------GV-- 191 (2102)
T ss_pred HHHhcCccc--hHHHHH------------------------------------------Hc---C-----------CH--
Confidence 222211110 000000 00 0 00
Q ss_pred ccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHh-cCCCCCC--CChHHHHHHHHHHcc-CcCHHHHHHHHHH
Q 000369 273 YELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1610)
Q Consensus 273 ~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~--~~~~~l~~~L~~~l~-D~n~~v~~~A~~~ 348 (1610)
+.+.+.+.+.+=..+.+|...|..++ +.+.... -+ ...++.|.+++. +.+..+...|+-+
T Consensus 192 ---------------p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~A 255 (2102)
T PLN03200 192 ---------------DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGA 255 (2102)
T ss_pred ---------------HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHH
Confidence 12344455555556666766665554 2221100 01 123566777776 5677899999999
Q ss_pred HHHHHHHhhhcchhh--hhhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcC-C
Q 000369 349 IGNLARGLRTHFSGS--SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-V 416 (1610)
Q Consensus 349 i~~La~~L~~~f~~~--~~~llp~Ll~klkd---------kk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~K-n 416 (1610)
+..|+.+- .++..+ -...+|.|++.+.. .+...++.+.-||..++.. ...+++.+...+.+. .
T Consensus 256 L~nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd 330 (2102)
T PLN03200 256 LEALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRS 330 (2102)
T ss_pred HHHHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccch
Confidence 99999751 222222 12457777777753 3345678888888887653 355777776666542 3
Q ss_pred hHHHHHHHHHHHHHHHhCChh-HHHHhh--hhHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHhCChhHHHhhhhccHHH
Q 000369 417 PLVRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~~~l~D~~~~V-R~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~ 492 (1610)
..+-..++..+..++...... .....+ ..+++.|.+++.+.++.+ .+.+.++|. ..+|+..+...+..-|.
T Consensus 331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da-- 405 (2102)
T PLN03200 331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA-- 405 (2102)
T ss_pred HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--
Confidence 444445555665554433211 111111 246789999999888774 767776664 34565444334432221
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000369 493 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 572 (1610)
Q Consensus 493 ~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1610)
.+-+...+...+ ..++.......
T Consensus 406 ik~LV~LL~~~~---------------------------~evQ~~Av~aL------------------------------ 428 (2102)
T PLN03200 406 KKVLVGLITMAT---------------------------ADVQEELIRAL------------------------------ 428 (2102)
T ss_pred hhhhhhhhccCC---------------------------HHHHHHHHHHH------------------------------
Confidence 111111111000 00000000000
Q ss_pred cCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhcccc------chhHHHHHHHh
Q 000369 573 ETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLV 646 (1610)
Q Consensus 573 ~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~------~~~~~~lv~~l 646 (1610)
+...+ -+.+........-.-+.++..|.+.+-..|..|+..+..+..+.++. ......|+++|
T Consensus 429 --~~L~~---------~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL 497 (2102)
T PLN03200 429 --SSLCC---------GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL 497 (2102)
T ss_pred --HHHhC---------CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 00000 01122222222223477889999999999999998888776432211 01234556665
Q ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHhhhc--cchhhHHHHHHHHHHHhhhChhhHHHHH
Q 000369 647 CMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERL 722 (1610)
Q Consensus 647 ~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~--~~il~~LveKlg--d~K~r~~a~~~L~~l~e~~~~~~v~~~l 722 (1610)
. ..+..++..+.-++..+... ..-.+..+ ..++|.|++-+. +.+.+..|..+|..+......+ ++..+
T Consensus 498 ~------s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~L 569 (2102)
T PLN03200 498 E------TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQL 569 (2102)
T ss_pred c------CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHH
Confidence 3 34567888888787766642 11112233 236777777654 4578888888999887654443 45666
Q ss_pred HhhhhcCCCHhHHHHHHHHHHHHHHHhCCC-----CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHh
Q 000369 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1610)
Q Consensus 723 ~~~l~~~knpKv~~~~l~~l~~~i~~fg~~-----~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (1610)
+.- +.+.+++++..++..+..++..-... +.....-++.+..+ +.+.++.+++.|..++..++....+
T Consensus 570 v~L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d----- 642 (2102)
T PLN03200 570 TAL-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQD----- 642 (2102)
T ss_pred HHH-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChH-----
Confidence 654 57889999999999887776521111 00011356777778 8999999999999988888742211
Q ss_pred hhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHH
Q 000369 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (1610)
Q Consensus 798 l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l 877 (1610)
+.+.+-. ....+-++..+.+.+-+.|+++...|
T Consensus 643 -------~~~avv~----------------------------------------agaIpPLV~LLss~~~~v~keAA~AL 675 (2102)
T PLN03200 643 -------LCESLAT----------------------------------------DEIINPCIKLLTNNTEAVATQSARAL 675 (2102)
T ss_pred -------HHHHHHH----------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHH
Confidence 1100000 00112366777888888999999999
Q ss_pred HHHHHHccccCCCC-ChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHH
Q 000369 878 NKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956 (1610)
Q Consensus 878 ~~ll~~a~~~i~~~-~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa 956 (1610)
..+..+.+..-... .-...++.|.+.|++.+..++..|+.++..++..-...-+-.....+++++..+.+....+|+.|
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~A 755 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNA 755 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Confidence 98885321100000 01346788999999999999999999999998753222111224668999999999999999999
Q ss_pred HHHHHHHHHhcCchhhH----------HHHHHHHhcCcC-Chhh--HHHHHHHHHHHhccCCC-CC------chhhhHHH
Q 000369 957 LTVLDAWLAAVHLDKMV----------PYVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKP 1016 (1610)
Q Consensus 957 ~~aL~~~~~~~~l~~ll----------~~l~~~L~~~~~-~~~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~p 1016 (1610)
..+|..+..+.+.+.++ ..+...|+..+. +... =.+++.+|++.=..... .+ +...-+.|
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~ 835 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEP 835 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHH
Confidence 99999999888766633 345566763321 1111 23445555542111111 11 23355778
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
++.||.+.+++|-..|.+.|..+++
T Consensus 836 l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 836 LVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999998874
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-08 Score=122.62 Aligned_cols=675 Identities=16% Similarity=0.171 Sum_probs=385.6
Q ss_pred CCcH-HHHHHHHHHHHHHHHHhchhh----h-hhhHHHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhhh------hhhH
Q 000369 63 DSNA-PVQDKALDALIAYLKAADADA----G-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA------VDVF 129 (1610)
Q Consensus 63 DsN~-~~q~~~leal~~~v~~~~~~~----~-~~~~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~e~~~------~~~v 129 (1610)
|++. ..+|.|+.||....+-+..-+ . +...-++|..++= +. ..|++|..|+.|+-.|+-+.. .+..
T Consensus 138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f-~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~F 216 (885)
T KOG2023|consen 138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQF-FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKF 216 (885)
T ss_pred cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHH-HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHH
Confidence 4444 778888888887766543311 1 2233445554442 22 589999999999998874421 2344
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcC-hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHh-hCCchhhHH
Q 000369 130 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKTI 207 (1610)
Q Consensus 130 ~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~-lG~~~~~~~ 207 (1610)
++.|..--+.-+|.|+...+..+.-++.-.--+.+| +..++.++...-+|.|.+|-=||..+...+... +-++.+.++
T Consensus 217 le~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 217 LEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 444444446788999988888888777644445554 678999999999999999999998886665522 122234455
Q ss_pred HhhhChHHHHHHH-----HHH-HHhcC-CCCCC-------cccchhhhhHhhhhhccccCCCCCCCCCCCCCCC-CCCCC
Q 000369 208 LFEKMRDTMKKEL-----EVE-LVNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVP-PEIDE 272 (1610)
Q Consensus 208 l~~~lk~~q~kel-----e~~-f~~~~-~~~~p-------~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~id~ 272 (1610)
| ++|-|+.+.-. +-. .++.. ....| +|+-++.+. ..+.+.+++++.+++ .|.|.
T Consensus 297 l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~----------~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 297 L-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH----------GNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred H-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc----------cCccccccccccccccccccc
Confidence 4 56666654321 111 11111 11122 244433221 011111111111100 01111
Q ss_pred ---ccC----CCcccc---------cCcCccchhhhhhccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHcc
Q 000369 273 ---YEL----VDPVDI---------LTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT 335 (1610)
Q Consensus 273 ---~d~----~~~vdI---------l~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~-~~ki~~~~~~~l~~~L~~~l~ 335 (1610)
|.+ +-..|| +..+- +-+.+.+.+..|+.|..++-.|.+|+. .-+-....+++|+.-|..++.
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~-PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILL-PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHH-HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 100 111222 22211 234456788999999999999999983 222233457899999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhc-chhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH----hhHHHHHH
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKT 410 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~-f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~----~vl~~l~~ 410 (1610)
|.-+.|+..+|=+++..++-.-.. =+.|...++..++.++-|+|+.|++||..|+.++-...+..+- .++..+.-
T Consensus 445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~ 524 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF 524 (885)
T ss_pred cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999999999998865433 3478999999999999999999999999999999876444443 44444433
Q ss_pred Hh---hcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHH---hhcCCChHHHHHHHHHHHHHHHHhCChhHHHh
Q 000369 411 SV---KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME---CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1610)
Q Consensus 411 ~l---~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~---~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~ 484 (1610)
++ ++||-.+-..+..-|+..+...-.. ..|++.++|.++. .+.|+|+++ =--.+||..+...+|.. |.||
T Consensus 525 af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~--~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~g-F~P~ 600 (885)
T KOG2023|consen 525 AFGKYQKKNLLILYDAIGTLADSVGHALNK--PAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVG-FLPY 600 (885)
T ss_pred HHHHHhhcceehHHHHHHHHHHHHHHhcCc--HHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcc-cccc
Confidence 33 5899887777777777666432100 1356778888875 689999987 45678999999998865 5566
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCC
Q 000369 485 IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSA 564 (1610)
Q Consensus 485 l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~ 564 (1610)
....-..-..-|..+....... ..+.. ...|.....-.+- -.. +|-
T Consensus 601 ~~~Vy~Rc~~il~~t~q~~~~~---~~~~~-----------~~~pdkdfiI~sL-DL~-------------------SGL 646 (885)
T KOG2023|consen 601 AQPVYQRCFRILQKTLQLLAKV---QQDPT-----------VEAPDKDFIIVSL-DLL-------------------SGL 646 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc---cCCcc-----------ccCCCcceEEEeH-HHH-------------------hHH
Confidence 6554443333333332211000 00000 0000000000000 000 000
Q ss_pred CCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHh-ccccchhHHHHH
Q 000369 565 KKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILV 643 (1610)
Q Consensus 565 ~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~-~~~~~~~~~~lv 643 (1610)
+.+ -++ ..|.+.++. -+..=+..++.|..-..|..++--|.++.+. .+..-+.++.++
T Consensus 647 aeg-----Lg~--------------~ie~Lva~s--nl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl 705 (885)
T KOG2023|consen 647 AEG-----LGS--------------HIEPLVAQS--NLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFL 705 (885)
T ss_pred HHH-----hhh--------------chHHHhhhc--cHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 000 000 001222111 1234457888999999999999999988877 444444556666
Q ss_pred HHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchh-hHHHHHHHHHHHh--hhChhhHHH
Q 000369 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT-RAHAMKCLTTFSE--AVGPGFIFE 720 (1610)
Q Consensus 644 ~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~-r~~a~~~L~~l~e--~~~~~~v~~ 720 (1610)
.++.. .+.-.|..|...++=++..++.+.+.-.+.++..++-.|+.-+-..++ +.....+-..+.. .+.|+.|..
T Consensus 706 ~~lg~--Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 706 PILGA--NLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHhh--cCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 66642 355667788888998888888876654455555565555544433222 1111111111111 223444433
Q ss_pred HH---Hhh----hhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHhhhCh
Q 000369 721 RL---YKI----MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGP 792 (1610)
Q Consensus 721 ~l---~~~----l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~-gl~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (1610)
.+ ++. +..-+.-.-...+...+..+|.--....+ ..++-++.-. +..+....+|..-.+.+.-....+|.
T Consensus 784 ~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv--~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~ 861 (885)
T KOG2023|consen 784 HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV--SSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGK 861 (885)
T ss_pred hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh--hhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhh
Confidence 22 221 11122223355667777777643222111 2233333322 23444456788777777776677775
Q ss_pred h-HHHhhhcccHHHHHHHHHHH
Q 000369 793 D-IKGFLADVKPALLSALDAEY 813 (1610)
Q Consensus 793 ~-l~~~l~~lkp~ll~~L~~ef 813 (1610)
. -..|.+.++|..++.|...+
T Consensus 862 ~nW~~~~~qf~P~~~erl~a~y 883 (885)
T KOG2023|consen 862 INWQRFSEQFPPPLKERLQAFY 883 (885)
T ss_pred hhHHHHhhcCChhHHHHHHHHh
Confidence 4 45677889998888887643
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-07 Score=128.87 Aligned_cols=811 Identities=15% Similarity=0.137 Sum_probs=470.3
Q ss_pred hhhhhhccC--ChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHH--hhhcch
Q 000369 289 GFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 361 (1610)
Q Consensus 289 ~f~~~l~s~--kW~~R~eal~~L~~l~~~~---ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~--L~~~f~ 361 (1610)
.+.+++.+. +-++|+.++.+|+.+++.. +..-.+....+..|...+...+..+...|+.++..|+.. .+...-
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv 96 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVL 96 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 577788755 6789999999999988432 110011123456666667655677788888888888764 222111
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------hHhhHHHHHHHhhcCCh---HHHHHHHHHHHHH
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTFC 430 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~-~~~-------l~~vl~~l~~~l~~Knp---~vR~~~l~~L~~~ 430 (1610)
....+|+|++.+++.....++++..+|..+..+. +.. -..++|.+...+++.+. -++..++..|..+
T Consensus 97 --~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 97 --LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred --HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 3678999999999989999999999999987641 011 13457888888887652 2444445566555
Q ss_pred HHhCChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000369 431 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1610)
Q Consensus 431 l~~~~~~~l~~~l-~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~ 509 (1610)
...... .....+ .-.+|.++..|.+.++.++..|..++..++...++ . +..|.+ . |
T Consensus 175 s~~~en-~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVIe---a-G----- 231 (2102)
T PLN03200 175 CGSTDG-FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVLD---A-G----- 231 (2102)
T ss_pred hcCccc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHHH---C-C-----
Confidence 443321 111111 23789999999999999998887777655433321 1 111111 0 0
Q ss_pred CCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCC
Q 000369 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1610)
Q Consensus 510 ~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1610)
T Consensus 232 -------------------------------------------------------------------------------- 231 (2102)
T PLN03200 232 -------------------------------------------------------------------------------- 231 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhccCcHHHHHHhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHH
Q 000369 590 SLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 668 (1610)
Q Consensus 590 s~ee~~~~~~~ll~~~l~~~L~s-~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~ 668 (1610)
.-+.+++.|.+ .+-..|.+|+-.|..+..... ...+.++. ..++..|.
T Consensus 232 ------------aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~LI 280 (2102)
T PLN03200 232 ------------AVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPALI 280 (2102)
T ss_pred ------------CHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHHH
Confidence 00334555543 344667777766665543211 11111111 11122221
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHH
Q 000369 669 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1610)
Q Consensus 669 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~ 748 (1610)
.++.. +. +.++ ..-...-+++.|.-+|..+|.-. ..++..+...+-..+...+...++..+..++..
T Consensus 281 ~lL~s-p~--~e~~--------~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 281 NATVA-PS--KEFM--------QGEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHhC-cc--hhhh--------ccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 11110 00 0000 00000113455555555555422 223444444332233455566666677777655
Q ss_pred hCCCC-----CChHhHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCC
Q 000369 749 FGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1610)
Q Consensus 749 fg~~~-----l~~k~li~~l~~~gl~~~n~~-VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~ 822 (1610)
+.... ++...+...+.++ +.+.++. |.+.+..++..+| |.. .+.+.|.+. +
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~----------~l~~~L~~~-------d-- 404 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNA----------YLSRKLNHA-------E-- 404 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CCh----------HHHHHHHhc-------c--
Confidence 54321 2222344556677 7877766 4777777766655 222 111222110 0
Q ss_pred CCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000369 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1610)
Q Consensus 823 ~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~ 902 (1610)
..+-++..+...+-..+..++..|..++.+.+...+.-.-...++.|..
T Consensus 405 -------------------------------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~ 453 (2102)
T PLN03200 405 -------------------------------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLIS 453 (2102)
T ss_pred -------------------------------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHH
Confidence 0012444455555567778888887776431111110000224677888
Q ss_pred ccccccHhHHHHHHHHHHHHHHHhChhHHHh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHH
Q 000369 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVP 974 (1610)
Q Consensus 903 ~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~-~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-----l--~~ll~ 974 (1610)
.|...+..++..|+.+++.|+..-...-... -...+|.+++.|...+..+++.|..+|..+..+-. + ...+|
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8888888899999999999876322111111 23589999999999999999999999988764321 1 24677
Q ss_pred HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhc
Q 000369 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1610)
Q Consensus 975 ~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~ 1054 (1610)
.|...|+++ ++..|..++..|..++... . .+.+.+++..|...++.+...+..+++.+......+.+.... .
T Consensus 534 pLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-~ 605 (2102)
T PLN03200 534 ALLWLLKNG--GPKGQEIAAKTLTKLVRTA-D----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG-S 605 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHhcc-c----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-h
Confidence 888999876 5788888888887765432 1 335577777787778888888888888776655544322211 0
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhcccccc
Q 000369 1055 IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1134 (1610)
Q Consensus 1055 L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1610)
....-...+.+.++..
T Consensus 606 ~~~ggL~~Lv~LL~sg---------------------------------------------------------------- 621 (2102)
T PLN03200 606 AANDALRTLIQLLSSS---------------------------------------------------------------- 621 (2102)
T ss_pred hccccHHHHHHHHcCC----------------------------------------------------------------
Confidence 0111112222222110
Q ss_pred CCCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHH-HHHHH-HH
Q 000369 1135 KDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLD-IL 1212 (1610)
Q Consensus 1135 ~~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~-~~~lD-ll 1212 (1610)
++..+..--..=+++...+.+..+.+- +.+.+ +-++.+|.+.++..+.++.-.|.....+....- ....+ -+
T Consensus 622 ---s~~ikk~Aa~iLsnL~a~~~d~~~avv--~agaI-pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga 695 (2102)
T PLN03200 622 ---KEETQEKAASVLADIFSSRQDLCESLA--TDEII-NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDA 695 (2102)
T ss_pred ---CHHHHHHHHHHHHHHhcCChHHHHHHH--HcCCH-HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 000000000000122223444443321 11222 367888889999999988888888775544332 22122 25
Q ss_pred HHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcCCcccc
Q 000369 1213 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT 1292 (1610)
Q Consensus 1213 lk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv 1292 (1610)
++.+...+.+.+..+...+++.|..++..-.. -.+.-..-.||.|+.-+.+..+.+|+.....+-++|..+|.+.+
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~ 771 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEV----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDV 771 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCchH----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHH
Confidence 66666677889999999999999976643211 11111234689999888887788999999999999999997764
Q ss_pred H----------HHHHhcccCCchhhH--HHHHHHHHHHHHh-hCCCcccc--------cchHHHHHhhhcCCchHHHHHH
Q 000369 1293 L----------PYILEGLRSKNNRTR--IECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDGEIRKAA 1351 (1610)
Q Consensus 1293 ~----------~~l~~gl~sKn~r~r--~e~l~~l~~li~~-~G~~~~~~--------~k~l~~ia~~i~drd~~VR~aA 1351 (1610)
+ ..|++-|++-|.+.- .|.|+.|+.+.+. +|.+...| +-.|..+..|+.+-+|.|-..|
T Consensus 772 ~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~ka 851 (2102)
T PLN03200 772 LKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKA 851 (2102)
T ss_pred HHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHH
Confidence 4 345556777776654 4699999988874 34333111 2357888899999999999999
Q ss_pred HHHHHHHHHhcChH--HH-HHhhcCCHHHHHHHHHHHHhh
Q 000369 1352 LNTLATGYKILGED--IW-RYVGKLTDAQKSMLDDRFKWK 1388 (1610)
Q Consensus 1352 l~~l~~~y~~~G~~--v~-~~~g~l~~~~~~~l~er~kr~ 1388 (1610)
+..|..+ ++|+ +. .++ .-.++-.+.|-.|+=.+
T Consensus 852 i~il~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 852 IEILSRL---CRDQPVVLGDLI-ANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHHH---hccChhHHHHHH-hcccchHHHHHHHHhhc
Confidence 9999865 4543 22 222 23455667777777664
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=126.34 Aligned_cols=211 Identities=19% Similarity=0.277 Sum_probs=174.6
Q ss_pred hhhhhc-cCChHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHccC-cCHHHHHHHHHHHHHHHHHhhhcchhhhh
Q 000369 290 FWEGVK-ATKWSERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1610)
Q Consensus 290 f~~~l~-s~kW~~R~eal~~L~~l~~~~--ki~~~~~~~l~~~L~~~l~D-~n~~v~~~A~~~i~~La~~L~~~f~~~~~ 365 (1610)
....+. +.+-.+|++|+.+|..++... ......|.+|+-.+-.++.| .+......|++.|+.+.+.-...|..+.+
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 333443 458889999999999977433 23456688999999999998 78888999999999999999999999999
Q ss_pred hHHHHHHHHhccCcH-HHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhh
Q 000369 366 FLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~-~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 444 (1610)
..+-.+|+..+|+.+ .++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.++++++..+...+...++
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 999999999999876 4556666666667665 333 334444444444444555678889999999999998999999
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcC
Q 000369 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1610)
Q Consensus 445 ~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (1610)
+++|.++++.+.+...||++|.-||.++...+|++.|.|++.+|...+++.|+-|++++
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998999999999999999999998764
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-07 Score=111.86 Aligned_cols=573 Identities=16% Similarity=0.189 Sum_probs=343.9
Q ss_pred HHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cC---CChH
Q 000369 328 RTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GC---LNLV 402 (1610)
Q Consensus 328 ~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~-~~---~~l~ 402 (1610)
..|+.+.+ -...+-+..+++|+..+|.-+|-..-||+..++..+=+.++|..+.||.-+..|+.+++.. +. -.++
T Consensus 514 pfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fD 593 (1172)
T KOG0213|consen 514 PFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFD 593 (1172)
T ss_pred HHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHH
Confidence 33444444 2234567888999999999999988999999999999999999999999999999999987 11 1244
Q ss_pred hhHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000369 403 DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1610)
Q Consensus 403 ~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~ 481 (1610)
.++..|..+.. |..- .=..-++.+..++.-.....-.-+..+++-.+.+-.+-+|.+..+.-.+.+..++...|-++-
T Consensus 594 sVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~ 672 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPA 672 (1172)
T ss_pred HHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHH
Confidence 55555655543 3221 111222222222222222111122344555555555666666555555555555555553221
Q ss_pred HHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCC
Q 000369 482 ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561 (1610)
Q Consensus 482 ~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~ 561 (1610)
--..+-|. +++...- .++. ++-++.
T Consensus 673 y~r~dilp--------~ff~~fw-----------------------------~rrm-----A~drr~------------- 697 (1172)
T KOG0213|consen 673 YIRFDILP--------EFFFSFW-----------------------------GRRM-----ALDRRN------------- 697 (1172)
T ss_pred HHhhhhhH--------HHHhhhh-----------------------------hhhh-----hccccc-------------
Confidence 00111111 1110000 0000 000000
Q ss_pred CCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhc-cCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccch---
Q 000369 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS-LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ--- 637 (1610)
Q Consensus 562 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~-ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~--- 637 (1610)
-+...+ +.-++.+++.. -+-.-++..|.|.+-+-|...++.+..++...+..+.
T Consensus 698 ------------ykqlv~----------ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider 755 (1172)
T KOG0213|consen 698 ------------YKQLVD----------TTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER 755 (1172)
T ss_pred ------------hhhHHH----------HHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH
Confidence 000000 00111111110 0113345677888888899999999888877554331
Q ss_pred hHHHHHHHhhcCCCCC--ccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--chhhHHHHHHHHHHHhhh
Q 000369 638 SVEILVRLVCMLPGWS--EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 713 (1610)
Q Consensus 638 ~~~~lv~~l~~~p~~~--DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~~~L~~l~e~~ 713 (1610)
.-+-+++.+.. .|. ++.-.|+-.+|.++.. .++.-.+.+...++..++-+|-+ +++|..|.+++..++-..
T Consensus 756 leE~lidgil~--Afqeqtt~d~vml~gfg~V~~---~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 756 LEERLIDGILY--AFQEQTTEDSVMLLGFGTVVN---ALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred HHHHHHHHHHH--HHHhcccchhhhhhhHHHHHH---HHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 12334444321 122 2333355556654432 22222345566677777777766 478988888877766543
Q ss_pred ---ChhhHH----HHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCC--ChHhHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 000369 714 ---GPGFIF----ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNATIKLLG 784 (1610)
Q Consensus 714 ---~~~~v~----~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l--~~k~li~~l~~~gl~~~n~~VR~aA~~ll~ 784 (1610)
+-+..+ ..|+..+ .-.-|.|.-..|..+..++.-+|.... +++.+++-+.+. |.+....|-..++.+++
T Consensus 831 ktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPI-LknrheKVqen~IdLvg 908 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPI-LKNRHEKVQENCIDLVG 908 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHh-hhhhHHHHHHHHHHHHH
Confidence 222232 3345554 567889998999999999988887643 588999999888 99999999999999998
Q ss_pred HHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCC
Q 000369 785 ALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES 864 (1610)
Q Consensus 785 ~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d 864 (1610)
.+... |+. | + +.|-. . .|.=+|++.|.+
T Consensus 909 ~Iadr-gpE---~------------------v-------~aREW-----------------M------RIcfeLlelLka 936 (1172)
T KOG0213|consen 909 TIADR-GPE---Y------------------V-------SAREW-----------------M------RICFELLELLKA 936 (1172)
T ss_pred HHHhc-Ccc---c------------------C-------CHHHH-----------------H------HHHHHHHHHHHH
Confidence 88632 221 0 0 00000 0 022356666766
Q ss_pred CChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
.|=.+|..|...++-|.. .|.| +|++..|.+-|+-.....+.-+--.|+-++...| +| .++|.+++-
T Consensus 937 hkK~iRRaa~nTfG~Iak----aIGP---qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~----pF--tVLPalmne 1003 (1172)
T KOG0213|consen 937 HKKEIRRAAVNTFGYIAK----AIGP---QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG----PF--TVLPALMNE 1003 (1172)
T ss_pred HHHHHHHHHHhhhhHHHH----hcCH---HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----ch--hhhHHHHhh
Confidence 677779999998887653 3555 6788888776643322222111112222223323 44 789999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCc---hhhhHH
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLK 1015 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~---~~~ll~ 1015 (1610)
+.-...+|+.-...+|.-+++.+| +-.+.|.|.++|.+. ++.-|+.+...+....-.....-+ +.+++.
T Consensus 1004 YrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr--D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR--DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence 999999999999999999998887 345788888998876 466788887777665444332211 233444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
-+...+-|.++-|-.+-.+|+..+...+|...|.+++
T Consensus 1082 ~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1082 LIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred HhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4667789999999999999999999999999999886
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-09 Score=122.71 Aligned_cols=378 Identities=17% Similarity=0.210 Sum_probs=261.5
Q ss_pred cHHHHHHhhcCChHHHHHHHHHHHHHHHhccccchh--HHHHHHHhhcCC-CCCccHHHHHHHHHHHHHHHHHHcCCCch
Q 000369 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLP-GWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1610)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~--~~~lv~~l~~~p-~~~DsN~~V~~~~l~~l~~l~~~~~~~~~ 679 (1610)
+..+.++|.|+.+..|.+|.-++++++++.-..+.. ..-++..+...- --.+.|. ...+|-.+...+-..+.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999883222222 222333222100 0012221 12444334333332333223
Q ss_pred hhHHHHHHHHHhhhccc--hhhHHHHHHHHHHHhhhChhh------HHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCC
Q 000369 680 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1610)
Q Consensus 680 ~~~~~il~~LveKlgd~--K~r~~a~~~L~~l~e~~~~~~------v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~ 751 (1610)
.+...+++.++..++|. ++|--|.+.|..++.....++ +|..+++.. ....+-|+ ++.+.+-.++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 37888999999999984 789999999999998766543 344444432 33333333 334555555655432
Q ss_pred ---CCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccc
Q 000369 752 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 828 (1610)
Q Consensus 752 ---~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~ 828 (1610)
..+++..+++.++.- +-..||.+|..-..-+-.|+..-+-.+-.|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 257889999999987 888999999988887777764433333333322
Q ss_pred cCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCC-C-ChhhHHHHHHhcccc
Q 000369 829 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-A-GTGELFGGLRGRLYD 906 (1610)
Q Consensus 829 r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~-~-~~~eL~~~L~~~L~D 906 (1610)
+-+.|+..++|.+-.+|.-.=..+.+.+.+- +-.| . +|.+.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 2345667777777777754444445555431 1122 1 478999999999999
Q ss_pred ccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000369 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 976 (1610)
Q Consensus 907 sn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~~~~---------l~~ll~~l 976 (1610)
++.-+...|+.+|.++.+--|+++-+|...++..++.++.|+.. .++..+...-..+...++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999877 577766555444444332 33677788
Q ss_pred HHHHhcCcCChhhHHHHHHHHHHHhccCCCC--CchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 977 ~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
...+.+. +-+.|.++++|+.....+.+.. .+..++...++..|.|++.+|-..+-+.+..++..
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 8888876 5789999999999988888762 34456666799999999999999999988888754
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-08 Score=116.80 Aligned_cols=585 Identities=15% Similarity=0.166 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHcc--CcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHHHH
Q 000369 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1610)
Q Consensus 300 ~~R~eal~~L~~l~~~--~ki~~~~~~~l~~~L~~~l~--D~n~~v~~~A~~~i~~La~~L~~~f~~~--~~~llp~Ll~ 373 (1610)
--|...|+.|.-+.+. |......+.+++-++..... +++..|+..|.+|+-.--.-.+..|..- ...++....+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 4567788888777642 22112335566666655543 7788889888888876555556677633 4567888889
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCh-----HhhHHHHHHHhhcCChHHHHHHHHHHHHHHHh-C-------------
Q 000369 374 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET-S------------- 434 (1610)
Q Consensus 374 klkdkk~~V~~aa~~al~ai~~~~~~~l-----~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~-~------------- 434 (1610)
...-.-..|+.++..||..|+.-..... +.++..-+.++++.|..|..++.+|-..+.+. .
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888899999999999999886311111 23444456788999999999999988855432 1
Q ss_pred -Chh--HHH-HhhhhHHHHHHHhhc-------CCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcC
Q 000369 435 -SKA--AVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1610)
Q Consensus 435 -~~~--~l~-~~l~~l~p~l~~~l~-------D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~ 503 (1610)
++. .+. ..++.++|.|.+.|. |-+=.+-.+|-.||..+..++|+..+.+.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 110 011 223466666666662 112245566666777777777654322111
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000369 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1610)
Q Consensus 504 ~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 583 (1610)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccc--hh-HHHHHHHhhcCCCCCccHHHHH
Q 000369 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QS-VEILVRLVCMLPGWSEKNVQVQ 660 (1610)
Q Consensus 584 ~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~--~~-~~~lv~~l~~~p~~~DsN~~V~ 660 (1610)
+-+.+.+.+.+|+.|..|+-.+..++.+..+.. .. .+.+-.++. -..|++..|.
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~---lm~D~sl~Vk 423 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN---LMSDPSLWVK 423 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH---HhcCchhhhc
Confidence 223346677899999999999998887743321 00 011111110 1235444444
Q ss_pred HHHHHHHHHHHHHcCC--CchhhHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHH
Q 000369 661 QQVIEVINYLAATATK--FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEG 738 (1610)
Q Consensus 661 ~~~l~~l~~l~~~~~~--~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~ 738 (1610)
...--.+..+++.++. .........++.+++-+. -.|+|-.-+
T Consensus 424 dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-----------------------------------DePrva~N~ 468 (859)
T KOG1241|consen 424 DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-----------------------------------DEPRVASNV 468 (859)
T ss_pred chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-----------------------------------hCchHHHHH
Confidence 3333333333332221 111222233333333333 344444433
Q ss_pred HHHHHHHHH---HhCCCC----CC---hHhHHHHHHhc-CCCC-CcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHH
Q 000369 739 ILWMVSAVE---DFGVSH----LK---LKDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALL 806 (1610)
Q Consensus 739 l~~l~~~i~---~fg~~~----l~---~k~li~~l~~~-gl~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll 806 (1610)
+-.+..+.+ +-+... .. ...++.-+.+. -..| ...+.|.+|-..|++|-++...+..+....+.+.++
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il 548 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVIL 548 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 333333222 222211 11 12333333221 0122 345799999999999999888877776667777777
Q ss_pred HHHHHHHhcCCCCCCCCCCcc-ccCccCc-----C---CCCCCCCCCCCccccccccchHHHhhcCCC-ChhHHHHHHHH
Q 000369 807 SALDAEYEKNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEA 876 (1610)
Q Consensus 807 ~~L~~ef~k~~~~~~~~p~r~-~r~~~~~-----~---~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~-~Wk~R~eale~ 876 (1610)
..|+.-++...- + -..|. +..-++. + +.. +. .+-.++..|...|+..++.+ .--+-.+|+-+
T Consensus 549 ~kl~q~i~~~~l-~--~~dr~q~~eLQs~Lc~~Lq~i~rk~--~~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~la 620 (859)
T KOG1241|consen 549 EKLDQTISSQIL-S--LADRAQLNELQSLLCNTLQSIIRKV--GS---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLA 620 (859)
T ss_pred HHHHHHHHHHhc-c--HhhHHHHHHHHHHHHHHHHHHHHHc--cc---cchhHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 766665541100 0 00000 0000000 0 000 00 11234556777788888773 44456778888
Q ss_pred HHHHHHHccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcH--HHH
Q 000369 877 VNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMR 953 (1610)
Q Consensus 877 l~~ll~~a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~--~Vr 953 (1610)
+..++...++.+... ...+.+.|..-| +-....|...|+..++.|+++|+.+|-+|+..++..++++|....- .|.
T Consensus 621 V~tl~~~Lg~~F~ky-m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vK 699 (859)
T KOG1241|consen 621 VSTLAESLGKGFAKY-MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVK 699 (859)
T ss_pred HHHHHHHHhHhHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccccc
Confidence 888876543332222 144555555555 3345678899999999999999999999999999999999987653 477
Q ss_pred HHHHHHHHHHHHhcC--chhhHHHHHHHHhc------Cc-------CChhhHHHHHHHHHHHhccCCCC---CchhhhHH
Q 000369 954 ECTLTVLDAWLAAVH--LDKMVPYVTTALTD------AK-------LGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLK 1015 (1610)
Q Consensus 954 ~aa~~aL~~~~~~~~--l~~ll~~l~~~L~~------~~-------~~~~~R~~~l~~L~~~l~~~~~~---~~~~~ll~ 1015 (1610)
-+...+...++-.+| .+.-+..+...|+. +. +.-.+|..+++.-.-.+..+... ..+.+.+.
T Consensus 700 P~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~ 779 (859)
T KOG1241|consen 700 PAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVP 779 (859)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchH
Confidence 777888888887776 22333333333331 11 11237888777766666666532 22334444
Q ss_pred HHHHh---c--CCC-CHHHHHHHHHHHHHHHHHhChHHHH
Q 000369 1016 PASIA---M--TDK-SSDVRKAAEACIVEILRAGGQETIE 1049 (1610)
Q Consensus 1016 pl~~~---L--~D~-~~dVR~aA~~~l~~l~~~~G~~~~~ 1049 (1610)
+++.. + ++. +..+-.+|...++-+...+|.+...
T Consensus 780 ~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 780 HIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 44432 2 333 3566777888888999999976444
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-08 Score=116.14 Aligned_cols=193 Identities=19% Similarity=0.203 Sum_probs=139.5
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChh--H-----
Q 000369 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA--V----- 930 (1610)
Q Consensus 858 ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~--~----- 930 (1610)
+...+.++.-|+-...+.-++.|+..+..++.+..+--++--|...|+..|+.++..|-.+++.|+.+.|+. +
T Consensus 693 ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Lln 772 (975)
T COG5181 693 LTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLN 772 (975)
T ss_pred ccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHh
Confidence 334455666677777788888887654444444323334555666667788889999999999999888862 0
Q ss_pred --------------------HHhh--hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhc
Q 000369 931 --------------------EKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTD 982 (1610)
Q Consensus 931 --------------------~~~~--~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~ 982 (1610)
..|. -.++|.++.-+.-...+|+.-...++.-|++.+| +-.+.|.|.++|.+
T Consensus 773 nLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD 852 (975)
T COG5181 773 NLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD 852 (975)
T ss_pred cchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 0111 1467777777777888899999999999988877 23467888888887
Q ss_pred CcCChhhHHHHHHHHHHHhccCCCCCc---hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 983 AKLGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 983 ~~~~~~~R~~~l~~L~~~l~~~~~~~~---~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
. +|.-|+.+.+.+..+.-+.+...+ +..++.-+...+-|.++-|-.+-.+++..|..++|...|.+++
T Consensus 853 r--D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 853 R--DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred c--chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6 577788888888766655544222 2344444667889999999999999999999999999999987
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-07 Score=110.10 Aligned_cols=629 Identities=15% Similarity=0.186 Sum_probs=376.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCc-C-HHHHHHHHHHHHH-HHH---Hhhh-----
Q 000369 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV-N-IAVAVEAIQAIGN-LAR---GLRT----- 358 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~-n-~~v~~~A~~~i~~-La~---~L~~----- 358 (1610)
+.++.-+.+-.+|+.|-+.|.++.+ +|+...+..|..++.|. + ..++..|.-.++. |.. ....
T Consensus 6 ~le~tlSpD~n~~~~Ae~~l~~~~~------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 6 LLEKTLSPDQNVRKRAEKQLEQAQS------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHh------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 4455567778889998888887653 57889999999988733 3 3344444333332 111 0111
Q ss_pred --cchhhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---hHhhHHHHHHHhhcCCh-HHHHHHHHHHHHHH
Q 000369 359 --HFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVP-LVRSLTLNWVTFCI 431 (1610)
Q Consensus 359 --~f~~~~~-~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~---l~~vl~~l~~~l~~Knp-~vR~~~l~~L~~~l 431 (1610)
.+...++ ++-..++..++.+-+.....|.+|+.+|... -.+ -+.+++.+.....+..+ .+|+.++..+..+-
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~-ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic 158 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI-ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC 158 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh-hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 1233333 4445567778889999999999999999876 122 23455555555544445 59999999999999
Q ss_pred HhCChhHHHHhhhhHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000369 432 ETSSKAAVLKVHKDYVPICMECL--NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1610)
Q Consensus 432 ~~~~~~~l~~~l~~l~p~l~~~l--~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~ 509 (1610)
+...+..+......++-+++.++ +.++..||-+|..||---+...+.. |+. +.-|.-|.+.
T Consensus 159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n-F~~------E~ern~iMqv---------- 221 (859)
T KOG1241|consen 159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN-FNN------EMERNYIMQV---------- 221 (859)
T ss_pred ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh-hcc------Hhhhceeeee----------
Confidence 98888877777788888888887 7889999999999886555554410 110 0001111100
Q ss_pred CCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCC
Q 000369 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1610)
Q Consensus 510 ~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1610)
T Consensus 222 -------------------------------------------------------------------------------- 221 (859)
T KOG1241|consen 222 -------------------------------------------------------------------------------- 221 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHh-ccccchhH-HHHHH-HhhcCCCCCccHHHHHHHHHHH
Q 000369 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSV-EILVR-LVCMLPGWSEKNVQVQQQVIEV 666 (1610)
Q Consensus 590 s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~-~~~~~~~~-~~lv~-~l~~~p~~~DsN~~V~~~~l~~ 666 (1610)
+.+.=.+.+-+.|.+|++.|.++..- ..-...+. +.++. ++. +++..|-+|.-+++|+
T Consensus 222 ----------------vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~---amks~~deValQaiEF 282 (859)
T KOG1241|consen 222 ----------------VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLA---AMKSDNDEVALQAIEF 282 (859)
T ss_pred ----------------eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCcHHHHHHHHHH
Confidence 00000111223455555555555433 11111111 22222 222 4667788899999999
Q ss_pred HHHHHHH-------cC------------CCchhhHHHHHHHHHhhhccc---------hhhHHHHHHHHHHHhhhChhhH
Q 000369 667 INYLAAT-------AT------------KFPKKCVVLCLLGISERVADI---------KTRAHAMKCLTTFSEAVGPGFI 718 (1610)
Q Consensus 667 l~~l~~~-------~~------------~~~~~~~~~il~~LveKlgd~---------K~r~~a~~~L~~l~e~~~~~~v 718 (1610)
|..+.+. .+ .|.+..+..++|.|++.|..- ..-.+|.-||..+++.++-+ +
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-I 361 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-I 361 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-c
Confidence 9865431 01 123345567889998887641 23567888999999987754 4
Q ss_pred HHHHHhhhh---cCCCHhHHHHHHHHHHHHHHHhCCCCCChHhH----HHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhC
Q 000369 719 FERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL----IDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1610)
Q Consensus 719 ~~~l~~~l~---~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~l----i~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G 791 (1610)
++.+++++. ++.+|+-|..+...+..+++ |.....++++ ++.+..+ +.|++--||+.+...++.+..++.
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~l-m~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINL-MSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHH-hcCchhhhcchHHHHHHHHHhhch
Confidence 456666543 57889999999999988885 4433333333 3444555 678888999999999999998877
Q ss_pred hhHH--HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhh--cCC-CC
Q 000369 792 PDIK--GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS--LES-PD 866 (1610)
Q Consensus 792 ~~l~--~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~--l~d-~~ 866 (1610)
.... .++...-+.+++.+.++=.-..+ ..=+-...+.........+ +..+... .....|...|++. ..| ..
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~DePrva~N-~CWAf~~Laea~~eA~~s~-~qt~~~t--~~y~~ii~~Ll~~tdr~dgnq 514 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLNDEPRVASN-VCWAFISLAEAAYEAAVSN-GQTDPAT--PFYEAIIGSLLKVTDRADGNQ 514 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhhCchHHHH-HHHHHHHHHHHHHHhccCC-CCCCccc--hhHHHHHHHHHhhccccccch
Confidence 5432 24455555555555553100000 0000000000000000000 0000000 1122233445443 233 35
Q ss_pred hhHHHHHHHHHHHHHHHccccCCCCChhhHHH--------HHH-hcc--cccc--HhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFG--------GLR-GRL--YDSN--KNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 867 Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~--------~L~-~~L--~Dsn--~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
-.-|..|.+.|.+++..+.....+. ...+.. .+. +.+ .|.. ..+...=|.+|+.+...+|+++.++
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~-v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~ 593 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPM-VQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV 593 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH
Confidence 7789999999999997532211111 011111 111 122 2221 2233444889999999999999999
Q ss_pred hhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC
Q 000369 934 SKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1610)
Q Consensus 934 ~~~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1610)
...++..++..+.. ....|.+.|.-++.+++.++| +..+.|++...|++-. ..++-..+.+....+...+..
T Consensus 594 ~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~-e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 594 SDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ-EYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988 445688999999999999987 4667778888886432 234445555655554444433
Q ss_pred C--CchhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 1007 F--PDAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 1007 ~--~~~~~ll~pl~~~L~D~--~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
. +....++.-++.||... +.+|+-.--.+++-|...+|.+ |.+++
T Consensus 673 ~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-F~~Yl 721 (859)
T KOG1241|consen 673 DILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-FEPYL 721 (859)
T ss_pred hhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh-HHHHH
Confidence 1 22344445578888554 6688888889999999999974 77776
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-07 Score=105.70 Aligned_cols=569 Identities=19% Similarity=0.232 Sum_probs=338.2
Q ss_pred hhHHHHHHHHh-hcCChhhHHHHHHHHHHHHHHhCCCCcC-hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCc--
Q 000369 127 DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD-- 202 (1610)
Q Consensus 127 ~~v~~~L~~~l-~~KnpKv~~~~l~~l~~~l~~fG~~~~~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~-- 202 (1610)
+.++..|.... +.|.|+.+-.|+.++.++-.-.|..+++ ++++++.+.+++.|...-||=.+...+-.++...|+=
T Consensus 315 ~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygi 394 (975)
T COG5181 315 EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGI 394 (975)
T ss_pred HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcch
Confidence 33444443333 4579999999999999999999998876 8999999999999999999998888888888888762
Q ss_pred -hhhHH---HhhhChHHHHHHHHHHHHhcCCCCCCc---cc----chhhhhHhhhhhccccCCCCCCCCCCC--------
Q 000369 203 -PVKTI---LFEKMRDTMKKELEVELVNVSGTARPT---RK----IRAEQDKELGQELISEDVGPGPSEEST-------- 263 (1610)
Q Consensus 203 -~~~~~---l~~~lk~~q~kele~~f~~~~~~~~p~---r~----~rs~~~~~~~~~a~~~~~~~~~~~~~~-------- 263 (1610)
.+... |.++....-=++|-..+... |-.-|. .| +|..... .-++- . .++++..
T Consensus 395 e~fd~vl~pLw~g~~~hrgk~l~sfLkA~-g~iiplm~peYa~h~tre~m~i-v~ref--~----spdeemkk~~l~v~~ 466 (975)
T COG5181 395 EQFDEVLCPLWEGASQHRGKELVSFLKAM-GFIIPLMSPEYACHDTREHMEI-VFREF--K----SPDEEMKKDLLVVER 466 (975)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHh-ccccccCChHhhhhhHHHHHHH-HHHHh--C----CchhhcchhHHHHHH
Confidence 11111 11222222222332222221 111120 01 1111100 00000 0 0000000
Q ss_pred -CCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHH---------HHH--HHHHhcCCCCCCCChHHHHHHHH
Q 000369 264 -ADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDA---------VAE--LTKLASTKRIAPGDFTEVCRTLK 331 (1610)
Q Consensus 264 -~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~ea---------l~~--L~~l~~~~ki~~~~~~~l~~~L~ 331 (1610)
=...+.++|+-+.+.| . ++|+ +..|.+|.+. +.. |.+.... ..+++.+.
T Consensus 467 ~C~~v~~~tp~~lr~~v------~-pefF----~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------~~v~~kil 527 (975)
T COG5181 467 ICDKVGTDTPWKLRDQV------S-PEFF----SPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------PRVSRKIL 527 (975)
T ss_pred HHhccCCCCHHHHHHhh------c-HHhh----chHHHhhhcccccccceeehhHHHHHHHcCC--------hHHHHHHH
Confidence 0011223454444322 1 2443 4569888765 111 1111111 23455555
Q ss_pred HHccCcCHHHHHHHHHHHHHHHHHhhh-cch-hhhhhHHHHHHHHhccCcHHHHH------HHHHHHHHHHHhcCCChHh
Q 000369 332 KLITDVNIAVAVEAIQAIGNLARGLRT-HFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVD 403 (1610)
Q Consensus 332 ~~l~D~n~~v~~~A~~~i~~La~~L~~-~f~-~~~~~llp~Ll~klkdkk~~V~~------aa~~al~ai~~~~~~~l~~ 403 (1610)
.-+.|.--..+..++.++..+...++. +|+ .....++-.++..|.+....+.- +...+++...+ ..+..
T Consensus 528 ~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k---p~l~~ 604 (975)
T COG5181 528 EYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK---PHLSM 604 (975)
T ss_pred hhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC---cchHH
Confidence 556676655666777777777777754 465 66778888999999876543321 11222222221 45678
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHH---HHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh-
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR- 479 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~- 479 (1610)
++..++..|+||.|.+|+.++..+..+ +..|..... +..+--++...|+.-+|+|=-.-..|+..|..+.|.+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~---l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKE---LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHH---HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 888889999999999999887776654 344544322 3445567889999999999999999999999999977
Q ss_pred ---hHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCC
Q 000369 480 ---PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556 (1610)
Q Consensus 480 ---~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~ 556 (1610)
++..+++.|.|..|.|=+...... +. .+. .. +..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nt------------i~---------------lvg-----~I-~~~---------- 718 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANT------------IA---------------LVG-----TI-CMN---------- 718 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhH------------HH---------------HHH-----HH-Hhc----------
Confidence 566677777777666544322110 00 000 00 000
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccc
Q 000369 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636 (1610)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~ 636 (1610)
+ +.-.+..|--. +.-+++..|.+.|=..|-.|.+.+.=+-+..++.+
T Consensus 719 ------------~----------------peyi~~rEWMR-----IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd 765 (975)
T COG5181 719 ------------S----------------PEYIGVREWMR-----ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD 765 (975)
T ss_pred ------------C----------------cccCCHHHHHH-----HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH
Confidence 0 00111222110 12356666777666677777766653322221110
Q ss_pred ----------------hhH-HHHHHHhhc-------CC----CCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 000369 637 ----------------QSV-EILVRLVCM-------LP----GWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLG 688 (1610)
Q Consensus 637 ----------------~~~-~~lv~~l~~-------~p----~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~ 688 (1610)
..| .+-+.+..+ .| .+.-+|..|++..|..+..+.+..++.+..+++.+.|-
T Consensus 766 vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPl 845 (975)
T COG5181 766 VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPL 845 (975)
T ss_pred HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000 000111110 11 13347888999999999999988788888899999999
Q ss_pred HHhhhccc--hhhHHHHHHHHHHHhhhCh---hhHHHHHHhhhh---cCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHH
Q 000369 689 ISERVADI--KTRAHAMKCLTTFSEAVGP---GFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1610)
Q Consensus 689 LveKlgd~--K~r~~a~~~L~~l~e~~~~---~~v~~~l~~~l~---~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li 760 (1610)
|-+.+.|. -.|+.|..++.-++=.++. +-.+-+++..++ -..+|-|+....+.+..+-.-.|. ..+.
T Consensus 846 leDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-----g~~m 920 (975)
T COG5181 846 LEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-----GAMM 920 (975)
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-----HHHH
Confidence 99999984 4689999888887755332 222223333222 246788877666655555444455 3688
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhh---hcccHHHHHHHH
Q 000369 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1610)
Q Consensus 761 ~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l---~~lkp~ll~~L~ 810 (1610)
.++.. ||-|+...||+.--..+-.+|.+-...+-+|+ ++++|..+++|.
T Consensus 921 ~Yv~q-GLFHPs~~VRk~ywtvyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 921 KYVQQ-GLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHHHH-hccCchHHHHHHHHHHHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 88887 69999999999999999999988877777666 667787777654
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-06 Score=108.05 Aligned_cols=285 Identities=14% Similarity=0.159 Sum_probs=191.9
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC---CCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchh
Q 000369 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1610)
Q Consensus 128 ~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~---~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~ 204 (1610)
.+.+.|..+..+-||..+.+.+-||...++.-|. .+...+.|......+++|.|.=+.+.|..-++-+|- +|+..+
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lgd~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LGDSSL 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cCCchh
Confidence 4556667788899999999999999999988884 344578899999999999999999998887777773 444323
Q ss_pred hHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhhHhhhhhcc--ccCCCCCCCCCCCCCCCCCCCCccCCCccccc
Q 000369 205 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI--SEDVGPGPSEESTADVPPEIDEYELVDPVDIL 282 (1610)
Q Consensus 205 ~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl 282 (1610)
+..| .+.|-.-|-. |..+-. +. .+.+.. ...-|.+ +.+..+.-
T Consensus 897 k~~L--------V~sL~~tl~~--Gkr~~~------~v--s~eTelFq~G~Lg~T-------p~Gg~isT---------- 941 (1702)
T KOG0915|consen 897 KKSL--------VDSLVNTLTG--GKRKAI------KV--SEETELFQEGTLGKT-------PDGGKIST---------- 941 (1702)
T ss_pred HHHH--------HHHHHHHHhc--cccccc------ee--ccchhcccCCcCCCC-------CCCCcchH----------
Confidence 3322 2333222211 211100 00 000000 0000100 01111211
Q ss_pred CcCccchhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcch
Q 000369 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS 361 (1610)
Q Consensus 283 ~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~ 361 (1610)
.++|..|++.- +-.+++-.+...-+ .+-=+-...|+.-++.|++.-+...+
T Consensus 942 -----------------------YKELc~LASdl-----~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~ 993 (1702)
T KOG0915|consen 942 -----------------------YKELCNLASDL-----GQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLE 993 (1702)
T ss_pred -----------------------HHHHHHHHhhc-----CChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhh
Confidence 13344444210 01133333333222 11111256677777777887788899
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~----~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
||.+.++|-|...=-|..+.|+++....-++++.-. ...+.+|+++++.+|.+|-|+||+.++..|..+++..+..
T Consensus 994 p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~ 1073 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD 1073 (1702)
T ss_pred hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH
Confidence 999999999999999999999998888777776421 1236688999999999999999999999999999998888
Q ss_pred HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 438 ~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
.+.+.++.+-.++...++|-...||+||-++...+.++.
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999988877666553
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-07 Score=110.48 Aligned_cols=403 Identities=14% Similarity=0.160 Sum_probs=277.7
Q ss_pred hHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHH
Q 000369 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (1610)
Q Consensus 717 ~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~-~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1610)
.+++++........+..-|.+.|..+..+.-..|.+... +..+++-+..+ +.|++..||.-|.+.+-.+.+.....+.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 345555544333333333558888888887777765322 34556556664 9999999999998887777666555555
Q ss_pred HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHH
Q 000369 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1610)
.|++.+-. .+-|+.. |.+-.+| .|.+
T Consensus 121 ~~Fn~iFd--------vL~klsa---------------------------------------------Dsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFD--------VLCKLSA---------------------------------------------DSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHH--------HHHHHhc---------------------------------------------CCccccc-cHHH
Confidence 55543322 2222211 1111111 1112
Q ss_pred HHH----HHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHH
Q 000369 876 AVN----KILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH 951 (1610)
Q Consensus 876 ~l~----~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~ 951 (1610)
-+. +|+.+. .-+.+ +.++++.|+.|+.+.|...++--+.+|..+-..-+-+|-.|...+++.+++.|+|+...
T Consensus 147 LLdRLikdIVte~--~~tFs-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e 223 (675)
T KOG0212|consen 147 LLDRLIKDIVTES--ASTFS-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE 223 (675)
T ss_pred HHHHHHHHhcccc--ccccC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH
Confidence 222 222211 00222 58899999999999999999999999988887777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC--CchhhhHHHHHHhcC
Q 000369 952 MRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMT 1022 (1610)
Q Consensus 952 Vr~aa~~aL~~~~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~ 1022 (1610)
||+-+..++..+...+. .+++++.+..-++++ .|..+.-++.|+.+++.-.+.. .....++..++.|+.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s 301 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLS 301 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCC
Confidence 99999999999987652 456777778778776 6899999999999987665542 233455566888998
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000369 1023 DKSS-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNR 1101 (1610)
Q Consensus 1023 D~~~-dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1101 (1610)
|... .++..|+..=..++..++.+....-
T Consensus 302 ~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-------------------------------------------------- 331 (675)
T KOG0212|consen 302 DTEEMSIKEYAQMVNGLLLKLVSSERLKEE-------------------------------------------------- 331 (675)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhccc--------------------------------------------------
Confidence 8766 5777776554444444443211100
Q ss_pred CCcccCCCCCCCCCCCccccchhhhhhccccccCCCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhcc
Q 000369 1102 AISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLS 1181 (1610)
Q Consensus 1102 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s 1181 (1610)
++ -+.-+| -+...+++
T Consensus 332 --------------------------------------------------id--~~~ii~------------vl~~~l~~ 347 (675)
T KOG0212|consen 332 --------------------------------------------------ID--YGSIIE------------VLTKYLSD 347 (675)
T ss_pred --------------------------------------------------cc--hHHHHH------------HHHHHhhc
Confidence 00 000111 23334445
Q ss_pred ccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHH
Q 000369 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261 (1610)
Q Consensus 1182 ~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l 1261 (1610)
..-..|+++++=+.-.....+-.++.+.|-+|.-+..-+.|+.--|+.+.|+.++.+..--...+ -..|+-.|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~-------~~~fl~sL 420 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPN-------LRKFLLSL 420 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccccc-------HHHHHHHH
Confidence 55567888888888888888888888899999999999999999999999999998654433332 26788888
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHhcCCccccHHHHHhcc
Q 000369 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1300 (1610)
Q Consensus 1262 ~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv~~~l~~gl 1300 (1610)
++..-+-+--++.+--=|++++|....+.+||.-+.+-+
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888877666677777888999999999999999766544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-06 Score=111.45 Aligned_cols=559 Identities=17% Similarity=0.130 Sum_probs=331.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000369 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~k 374 (1610)
...+-..|..+...+..+.-..+.... -..+.+.+...+ |.+..|...+..=++.+....+ -..|...++|.+...
T Consensus 92 ~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 92 SNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELL 167 (759)
T ss_pred Cchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhh
Confidence 344556666666666544311111111 346777777777 7777666655554444444322 235677888888888
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHh---hcCCh-HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHH
Q 000369 375 LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV---KNKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1610)
Q Consensus 375 lkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l---~~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1610)
.-+....||+++.+++..+... .+-....+.+...+ ...-| +.|.-++..+..+....+...+ -.++.|..
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~~ 242 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPIV 242 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHHH
Confidence 8888899999999999998865 23222233333222 22222 3455666777766665553323 25677888
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCc
Q 000369 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASE 530 (1610)
Q Consensus 451 ~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~ 530 (1610)
.....|..+.||.++.+-++.+.+.++..... ..+.+
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~---------------------------------------- 279 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLP---------------------------------------- 279 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccH----------------------------------------
Confidence 89999999999999999999999888752210 00000
Q ss_pred chhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHh
Q 000369 531 SSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQL 610 (1610)
Q Consensus 531 ~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L 610 (1610)
.++...
T Consensus 280 --------------------------------------------------------------------------~~~~L~ 285 (759)
T KOG0211|consen 280 --------------------------------------------------------------------------TLIQLL 285 (759)
T ss_pred --------------------------------------------------------------------------HHhhhh
Confidence 011111
Q ss_pred hcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 000369 611 KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGIS 690 (1610)
Q Consensus 611 ~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~Lv 690 (1610)
.|..=..|+.|++.+......+...+.....+...+.. -..|.+..+.-..-+....+....+. . ..-....+...
T Consensus 286 ~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~-~~~~~~~~~~~ 361 (759)
T KOG0211|consen 286 RDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-S-ATRTQLVPPVS 361 (759)
T ss_pred hcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-c-cCcccchhhHH
Confidence 11112345555555554444422211111111111100 02344444433333333333332222 0 11112334445
Q ss_pred hhhccch--hhHHHHHHHHHHHhhhC----hhhHHHHHHhhh---hcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHH
Q 000369 691 ERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1610)
Q Consensus 691 eKlgd~K--~r~~a~~~L~~l~e~~~----~~~v~~~l~~~l---~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~ 761 (1610)
+-++|.. .|.++..-...+++..+ +....+.+++.+ ..+.|+.|+......+......+|.. -.+..+++
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~ti~~llp 440 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-RTISELLP 440 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-cCccccCh
Confidence 5556643 34444444445555444 444444444432 45788888888777766666666642 12445666
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCC
Q 000369 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1610)
Q Consensus 762 ~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~ 841 (1610)
..... +.+-.+.||..-+..+..+-..++ +.+ +
T Consensus 441 ~~~~~-l~de~~~V~lnli~~ls~~~~v~~------------------------v~g---------~------------- 473 (759)
T KOG0211|consen 441 LLIGN-LKDEDPIVRLNLIDKLSLLEEVND------------------------VIG---------I------------- 473 (759)
T ss_pred hhhhh-cchhhHHHHHhhHHHHHHHHhccC------------------------ccc---------c-------------
Confidence 66665 788888888776643311111110 000 0
Q ss_pred CCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHH
Q 000369 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1610)
Q Consensus 842 ~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~ 921 (1610)
+ -++..+.+.+...-.|.+|+.|.+.++.+..++......+.. ..+...+...+.|.-..++..|.+.+..
T Consensus 474 -~-----~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 474 -S-----TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred -h-----hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 0 001112233444445669999999999999888653211111 2234444566777777889999999999
Q ss_pred HHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCcCChhhHHHHHHHH
Q 000369 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (1610)
Q Consensus 922 la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l----~~ll~~l~~~L~~~~~~~~~R~~~l~~L 997 (1610)
++...|..+ +...++|.++...++.+-.+|.+...++..++..+|- +.++|.+.....++ +|.+|..++..|
T Consensus 545 l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L 620 (759)
T KOG0211|consen 545 LVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHL 620 (759)
T ss_pred HHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHH
Confidence 999999554 3457899999999998888999999999999999983 45677777666666 689999999999
Q ss_pred HHHhccCCCCCchhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCh
Q 000369 998 SKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQ 1045 (1610)
Q Consensus 998 ~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1610)
...+..+.. +.....+.|+..+| .|.+.|||-.|..++..+..+.-+
T Consensus 621 ~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~ 668 (759)
T KOG0211|consen 621 PKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLE 668 (759)
T ss_pred HHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 987766543 23456777766655 899999999999999888766544
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=115.38 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=159.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000369 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ll 368 (1610)
-..++.+++|....++|..|+.|. -++......+.+++-.+.+-+++.|+.|...||.|++.|+..+.+.+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987 4666666678888888888899999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh-hHHHHhhhhHH
Q 000369 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYV 447 (1610)
Q Consensus 369 p~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~ 447 (1610)
-.|+.+-.+.|..|++.+..||.++..+ .++..+++.|..+++|.||.+|..++.-+.+|+...+- .....+....+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 88899999999999999999999888777777776542 12224556788
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 448 PICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 448 p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
+.+..-+.|.-+++|++|...+.....++
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHHHH
Confidence 99999999999999999987765554443
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00052 Score=89.29 Aligned_cols=648 Identities=15% Similarity=0.176 Sum_probs=351.7
Q ss_pred CChHHHHHHHHHHcc--CcCHHHHHHHHHHHHHHHHHhhhc-ch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000369 321 GDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 321 ~~~~~l~~~L~~~l~--D~n~~v~~~A~~~i~~La~~L~~~-f~-~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~ 396 (1610)
..|+++.+.|...+. .+|-.|...++.|++.|-..-... +. +-....+-.++.-.-++++.||.++..++.+++.+
T Consensus 89 ~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 89 AKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcC
Confidence 457788888888887 889999999999999987764322 33 33566777888888899999999999999999986
Q ss_pred cCCChHhhHH-------HHHHHhhcC-ChHHHH---HHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHH
Q 000369 397 GCLNLVDVVE-------DVKTSVKNK-VPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAA 465 (1610)
Q Consensus 397 ~~~~l~~vl~-------~l~~~l~~K-np~vR~---~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA 465 (1610)
+++.++..-| ..+..+..+ ++..-. .+|..|...+..|+...+ +.++..+..++.-++..|+-.+
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li----~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLI----KSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHH----HHHHHHHHhhcccchHHHHHHH
Confidence 4443322111 111222211 122223 334445555556665544 8889999999999999999999
Q ss_pred HHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcc---hhhhhhhcccc
Q 000369 466 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASES---SFVRKSAASML 542 (1610)
Q Consensus 466 ~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~---~~~~~~~~s~~ 542 (1610)
++|+..+.+.-.. .|+...-.++-.++-..+ |+.. .+- ... ....+....
T Consensus 245 ~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~~---------D~~-~t~~W~~v~~~~~~~-- 297 (1176)
T KOG1248|consen 245 LQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSEN---------DDL-LTVAWLKVLNEAHDI-- 297 (1176)
T ss_pred HHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCcc---------chH-HHHHHHHHHHHHHHH--
Confidence 9999877765443 222222222222221111 1100 000 000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHH
Q 000369 543 SGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAI 622 (1610)
Q Consensus 543 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~ 622 (1610)
. ..+..|-+...+..++ +-+.+ +..+.-++++++.
T Consensus 298 ----------------------------------l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~~q~a 332 (1176)
T KOG1248|consen 298 ----------------------------------L---------ATLQEEKALQALPRLF-SLFFT-ILESLIEELVQAA 332 (1176)
T ss_pred ----------------------------------H---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHHHHHH
Confidence 0 0001122222222233 23445 5666677777766
Q ss_pred HHHHHHH-Hhccc-cchhHHH-HHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhh--ccch
Q 000369 623 SSLRQQV-EAVQN-LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV--ADIK 697 (1610)
Q Consensus 623 ~~L~~~~-~~~~~-~~~~~~~-lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKl--gd~K 697 (1610)
.+....+ +..-. .+..|.. +-.+|.. .-..|...+|+++..+.+.|+..+...+-.+|-.|...= +|.-
T Consensus 333 ~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~ 406 (1176)
T KOG1248|consen 333 SQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFF 406 (1176)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCc
Confidence 6544333 32111 1122332 2222221 122467778888888888888777777777777776632 2333
Q ss_pred hhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCC-CC--ChHhHHHHHHhc-----CCC
Q 000369 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL--KLKDLIDFCKDT-----GLQ 769 (1610)
Q Consensus 698 ~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~-~l--~~k~li~~l~~~-----gl~ 769 (1610)
.+....+++.+...+.||+.|+..+==.+ ++-.....=.||--++.++-.. .+ -...+++...++ ++.
T Consensus 407 ~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~ 482 (1176)
T KOG1248|consen 407 HKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLK 482 (1176)
T ss_pred cHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56677788888888999987766552111 2222333345676677665331 11 112233332211 011
Q ss_pred CCcHHH---HHHHHHHHHHHHhhhC--hhHHHhhh--------------cccHHHHHHHHHHHhcCC-------------
Q 000369 770 SSAAAT---RNATIKLLGALHKFVG--PDIKGFLA--------------DVKPALLSALDAEYEKNP------------- 817 (1610)
Q Consensus 770 ~~n~~V---R~aA~~ll~~Ly~~~G--~~l~~~l~--------------~lkp~ll~~L~~ef~k~~------------- 817 (1610)
...-.+ +.-.-++..-|-.|.- -++..-|. ++.+.+...|..-.+.+.
T Consensus 483 ~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s 562 (1176)
T KOG1248|consen 483 EAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLS 562 (1176)
T ss_pred hccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHh
Confidence 111111 1111111111111110 01111112 233333333333333321
Q ss_pred -------------CCCCCCCCccc-----------c------CccCc-----CCC---CCCCCCC---------------
Q 000369 818 -------------FEGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG--------------- 844 (1610)
Q Consensus 818 -------------~~~~~~p~r~~-----------r------~~~~~-----~~~---~~~~~d~--------------- 844 (1610)
+..+++..|.. + ..... .+. +++.++.
T Consensus 563 ~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~ 642 (1176)
T KOG1248|consen 563 NDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIA 642 (1176)
T ss_pred hhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHh
Confidence 00011111100 0 00000 000 0000000
Q ss_pred ----CCccccccccchHHHhhcC-CCChhHHHHHHHHHHHHHHHc-cccCCCCChhhHHHHHHhccccccHhHHHHHHHH
Q 000369 845 ----LPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 918 (1610)
Q Consensus 845 ----~pr~dIs~~l~~~ll~~l~-d~~Wk~R~eale~l~~ll~~a-~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~ 918 (1610)
.+...++... ++..... ..+-++++.+.+-|..++... ..........+++..|.+-+.++....+...|.|
T Consensus 643 ~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~ 720 (1176)
T KOG1248|consen 643 LAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKC 720 (1176)
T ss_pred hhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 0000011100 1111222 236677778888888777530 0111112246788888888888888899999999
Q ss_pred HHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--hc---C-------chhhHHHHHHHHhcCcCC
Q 000369 919 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--AV---H-------LDKMVPYVTTALTDAKLG 986 (1610)
Q Consensus 919 l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~--~~---~-------l~~ll~~l~~~L~~~~~~ 986 (1610)
+..|...++..+..+....+|-++-.+++-+..-|+.+.+||-.+.. .. | +..+++.|..++..+ .
T Consensus 721 L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~ 798 (1176)
T KOG1248|consen 721 LKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD--S 798 (1176)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc--H
Confidence 99999999988888888999988888899999999999999998883 21 2 344555666665543 2
Q ss_pred hhhHHHHHHHHHHHhccCCC---CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh
Q 000369 987 AEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1610)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1610)
...+...+-.+...+.+... ..-+..++.-+..+|...+++||++|...+..++..+++.-+.+++..|=|.
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 33444434444444444332 2234455666778899999999999999999999999998888887655444
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=118.77 Aligned_cols=268 Identities=18% Similarity=0.145 Sum_probs=149.2
Q ss_pred HHHHhhhcc--chhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000369 687 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 764 (1610)
Q Consensus 687 ~~LveKlgd--~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~ 764 (1610)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ ++.++.||..++..|..+.+.... .+.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------APALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------hHHHH
Confidence 344444444 346766666666543 233455555543 677788887777777665432111 12233
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHHhhhCh--hHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCC
Q 000369 765 DTGLQSSAAATRNATIKLLGALHKFVGP--DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1610)
Q Consensus 765 ~~gl~~~n~~VR~aA~~ll~~Ly~~~G~--~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~ 842 (1610)
.+ |++.++.||.+|+..|+.+.. |. .+...|.+-.+......-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc--------------------------
Confidence 44 677788888888777776531 11 011112221221111111111110
Q ss_pred CCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHH
Q 000369 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1610)
Q Consensus 843 d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~l 922 (1610)
. -.+.++..+.|.++.+|..+.+.|..+-... ...+..|...++|.+..|+..|+..|+.+
T Consensus 742 ---~-------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 742 ---D-------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ---c-------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 0 0123455677777888887777776553210 22245566667777777777777766655
Q ss_pred HHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhc
Q 000369 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1610)
Q Consensus 923 a~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1610)
.. . ..+.+.++..+.|....||.+|..+|..+ +-...++.|...|+++ ++.+|..++..|..+
T Consensus 803 g~----~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~-- 865 (897)
T PRK13800 803 GC----P-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW-- 865 (897)
T ss_pred CC----c-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc--
Confidence 21 1 12334567777777777888877777543 3345557777777766 577788777777652
Q ss_pred cCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHH
Q 000369 1003 GLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1610)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~ 1037 (1610)
. ........+...++|.+++||.+|..+|.
T Consensus 866 --~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 --P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred --C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11223344667777888888888877764
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0052 Score=80.39 Aligned_cols=238 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCC
Q 000369 761 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 840 (1610)
Q Consensus 761 ~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~ 840 (1610)
...... ..++++.|+.-+..+|.++-.. +....+..+....+.+.+-+-|+.
T Consensus 657 ~v~~~~-e~~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs------------------------- 708 (1176)
T KOG1248|consen 657 TVDPEF-ENSSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQS------------------------- 708 (1176)
T ss_pred HhhHHh-hccccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhc-------------------------
Confidence 334444 5666899999999999988765 333333322222233333332222
Q ss_pred CCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHH
Q 000369 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 920 (1610)
Q Consensus 841 ~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~ 920 (1610)
..--.|...+..|..|+...+.....-....+..++... +|-|...++.|..||.
T Consensus 709 ------------------------~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 709 ------------------------SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLV 763 (1176)
T ss_pred ------------------------cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHH
Confidence 222245566777777776432111110112222333223 8888888999999888
Q ss_pred HHHH--H---hChhH-HHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcCCh
Q 000369 921 AVAS--A---MGPAV-EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGA 987 (1610)
Q Consensus 921 ~la~--~---lg~~~-~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-------l~~ll~~l~~~L~~~~~~~ 987 (1610)
.|+. . .|.+= ...+..+++.|...+......++.+-+-++..++..-+ +..++..+.-.|.+. ++
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sr 841 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SR 841 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CH
Confidence 8882 1 23221 22455666666666655566666665777777775432 455666777777765 69
Q ss_pred hhHHHHHHHHHHHhccCCC---CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhh
Q 000369 988 EGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1610)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1610)
+++..++.++..++...+. .++...++..+...+.|.+..+|.+.+..+..+++.+|.+.+..++.
T Consensus 842 eI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 842 EIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 9999999999998888776 23334444557778899999999999999999999999999998875
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00013 Score=94.45 Aligned_cols=503 Identities=17% Similarity=0.191 Sum_probs=275.1
Q ss_pred hhhhhccC--ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000369 290 FWEGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1610)
Q Consensus 290 f~~~l~s~--kW~~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ 366 (1610)
+.+.+++. +-.+|++++..|..+. .+. +...++..+.+.+...+..+.+.+--.+..++. .=...+..
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLIL 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHH
Confidence 33344555 6778899999887754 332 233344555566676677655555444443332 22235778
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh-
Q 000369 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD- 445 (1610)
Q Consensus 367 llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~- 445 (1610)
+...+.+-+.++++.++..|-.++..+... .-.+.+++.|...+.|++|.||..++..+.+++...+.. ++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~ 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDE 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGG
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHH
Confidence 899999999999999999888888887643 335667888889999999999999999999998874332 233
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCC
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 525 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~ 525 (1610)
+++.+.+++.|.++.|+.+|..++..+ +. .++....++..+ -..+...+.. +..-.
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~~~----~~~L~~~l~~---------~~~~~--------- 208 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIPKL----IRILCQLLSD---------PDPWL--------- 208 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHHHH----HHHHHHHHTC---------CSHHH---------
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHHHH----HHHhhhcccc---------cchHH---------
Confidence 799999999999999999999999888 21 111111122221 1222222200 00000
Q ss_pred CCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHH
Q 000369 526 VEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPAD 605 (1610)
Q Consensus 526 ~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~ 605 (1610)
.-..-....... ....++... ..+-+.
T Consensus 209 ---------q~~il~~l~~~~-----------------------------------------~~~~~~~~~---~~~i~~ 235 (526)
T PF01602_consen 209 ---------QIKILRLLRRYA-----------------------------------------PMEPEDADK---NRIIEP 235 (526)
T ss_dssp ---------HHHHHHHHTTST-----------------------------------------SSSHHHHHH---HHHHHH
T ss_pred ---------HHHHHHHHHhcc-----------------------------------------cCChhhhhH---HHHHHH
Confidence 000000000000 001111100 112245
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHH
Q 000369 606 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLC 685 (1610)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~i 685 (1610)
+...|.+.++..+.+++..+..+.....-.....+.+.+++. +++..+.-.+++.+..++...+.... .....
T Consensus 236 l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~ 308 (526)
T PF01602_consen 236 LLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI 308 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhh-hhhhh
Confidence 667777888888888888777443222111112344444442 33333555667766666554311111 01111
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHh
Q 000369 686 LLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKD 765 (1610)
Q Consensus 686 l~~LveKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~ 765 (1610)
+ ..+..-.|.-+|..+.++|..++.......++.++.+++.....+.++.+++..+..+...|.. +....++.+.+
T Consensus 309 ~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~ 384 (526)
T PF01602_consen 309 L-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLK 384 (526)
T ss_dssp H-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHH
T ss_pred h-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHHHHHHHHHH
Confidence 1 1111122334566667777777766666666666666653344555666666666666665532 22333344433
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCC
Q 000369 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 845 (1610)
Q Consensus 766 ~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~ 845 (1610)
+ +...+..|+..+
T Consensus 385 l-l~~~~~~~~~~~------------------------------------------------------------------ 397 (526)
T PF01602_consen 385 L-LEISGDYVSNEI------------------------------------------------------------------ 397 (526)
T ss_dssp H-HHCTGGGCHCHH------------------------------------------------------------------
T ss_pred h-hhhccccccchH------------------------------------------------------------------
Confidence 3 333333333222
Q ss_pred CccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHH
Q 000369 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVAS 924 (1610)
Q Consensus 846 pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~ 924 (1610)
+..+..++... +.....++..|...+.+ ....+...++-++|+.+.
T Consensus 398 ----------------------------~~~i~~ll~~~-----~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 398 ----------------------------INVIRDLLSNN-----PELREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp ----------------------------HHHHHHHHHHS-----TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred ----------------------------HHHHHHHhhcC-----hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 33333333210 11112222222222222 233456667777777666
Q ss_pred HhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCcCChhhHHHHHHHHH
Q 000369 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 925 ~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~----~ll~~l~~~L~~~~~~~~~R~~~l~~L~ 998 (1610)
.... .. ....++..+.+.+.+....|+..+..++..+....+-. .+++.+......+..++++|..+..++.
T Consensus 445 ~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 445 LIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred cccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 5544 11 56677888888888888999999999999998877633 4455555555511227888988887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00048 Score=82.41 Aligned_cols=495 Identities=14% Similarity=0.154 Sum_probs=273.7
Q ss_pred HHHHccCcCHHHHHHHHHHHHHHHHH-hh---------------hcchh-hhhhHHHHHHHHhccCc-------HHHHHH
Q 000369 330 LKKLITDVNIAVAVEAIQAIGNLARG-LR---------------THFSG-SSRFLLPVLLEKLKEKK-------PTVAES 385 (1610)
Q Consensus 330 L~~~l~D~n~~v~~~A~~~i~~La~~-L~---------------~~f~~-~~~~llp~Ll~klkdkk-------~~V~~a 385 (1610)
....++..|-.|...|......++.. .. ..|.. -+..++|.||..+-... =++.-+
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 33445688888888887777665542 11 12331 24568999998884422 256678
Q ss_pred HHHHHHHHHHh-cCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHH
Q 000369 386 LTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1610)
Q Consensus 386 a~~al~ai~~~-~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~a 464 (1610)
+..||.-+... +..-+..++..+...+++.+|.-|..+.-.+...+..-....+.++.++.+|.+...++|+.--|.+.
T Consensus 348 A~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t 427 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST 427 (858)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence 88898887765 11224557777778889999999999999999988877777788889999999999999999999999
Q ss_pred HHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCC
Q 000369 465 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 544 (1610)
Q Consensus 465 A~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 544 (1610)
+..|++.|..++.+. ++|-. .|.+...+.+...
T Consensus 428 tAwc~g~iad~va~~-i~p~~-Hl~~~vsa~liGl--------------------------------------------- 460 (858)
T COG5215 428 TAWCFGAIADHVAMI-ISPCG-HLVLEVSASLIGL--------------------------------------------- 460 (858)
T ss_pred HHHHHHHHHHHHHHh-cCccc-cccHHHHHHHhhh---------------------------------------------
Confidence 999999999888642 11111 1111111111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHH
Q 000369 545 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISS 624 (1610)
Q Consensus 545 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~ 624 (1610)
.|-|..........+.+...+ ++ +.++
T Consensus 461 ---------------------------------~D~p~~~~ncsw~~~nlv~h~----a~----------------a~~~ 487 (858)
T COG5215 461 ---------------------------------MDCPFRSINCSWRKENLVDHI----AK----------------AVRE 487 (858)
T ss_pred ---------------------------------hccchHHhhhHHHHHhHHHhh----hh----------------hhcc
Confidence 000000000000011111000 00 0000
Q ss_pred HHHHHHhccccchhHHHHHHHhhcC--CCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccchhhHHH
Q 000369 625 LRQQVEAVQNLDQSVEILVRLVCML--PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHA 702 (1610)
Q Consensus 625 L~~~~~~~~~~~~~~~~lv~~l~~~--p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a 702 (1610)
..+.+ ...-..++..|.+. ...+|+| ....++++|..++..+++-.......+.....+|++..
T Consensus 488 ~~S~l------~~fY~ai~~~Lv~~t~~~~Ne~n--~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~------ 553 (858)
T COG5215 488 VESFL------AKFYLAILNALVKGTELALNESN--LRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDEC------ 553 (858)
T ss_pred ccchh------HHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH------
Confidence 00000 00111222222211 1145666 45567888888888766544444455555555565542
Q ss_pred HHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHh-HHHHHHhcCCCCCcHHHHHHHHH
Q 000369 703 MKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAATRNATIK 781 (1610)
Q Consensus 703 ~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~-li~~l~~~gl~~~n~~VR~aA~~ 781 (1610)
+.... +++..=-..-.-.+++--+..|..+|..++...-++.+ ++..+... ++.+.+.+
T Consensus 554 ---isv~~----------q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~------ 613 (858)
T COG5215 554 ---ISVLG----------QILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTT------ 613 (858)
T ss_pred ---HHHhh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCch------
Confidence 11111 11110000001223555677888899999986545544 66666666 77775543
Q ss_pred HHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhh
Q 000369 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 861 (1610)
Q Consensus 782 ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~ 861 (1610)
..+..|.-+| ++...|++.|++... ++.|-+.+.
T Consensus 614 ~~~dV~~aIs------------al~~sl~e~Fe~y~~----------------------------------~fiPyl~~a 647 (858)
T COG5215 614 AFGDVYTAIS------------ALSTSLEERFEQYAS----------------------------------KFIPYLTRA 647 (858)
T ss_pred hhhHHHHHHH------------HHHHHHHHHHHHHHh----------------------------------hhhHHHHHH
Confidence 2233332222 334455555555411 012223333
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccc--cHhHHHHHHHHHHHHHHHhChhHHHhhhhHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~-~eL~~~L~~~L~Ds--n~~v~~~al~~l~~la~~lg~~~~~~~~~ll 938 (1610)
+...+..+-..++--++.+...-+..+.+ | ..++..|.+.|+.+ +.++.-.-+.+.+.||.++|.+|.+|+..++
T Consensus 648 ln~~d~~v~~~avglvgdlantl~~df~~--y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im 725 (858)
T COG5215 648 LNCTDRFVLNSAVGLVGDLANTLGTDFNI--YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIM 725 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444445556666666666532233333 3 34567777777544 4567778899999999999999999999887
Q ss_pred HHHHHHhC-----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHh-------cCcCChhhHHHHHHHHH
Q 000369 939 SDILKCLG-----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT-------DAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 939 p~ll~~l~-----------D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~-------~~~~~~~~R~~~l~~L~ 998 (1610)
.-+-..-. |=...++.....+.-.+..... ++.++|++...+. ++..+...-..+++.+.
T Consensus 726 ~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLig 805 (858)
T COG5215 726 MLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIG 805 (858)
T ss_pred HHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHH
Confidence 65544321 1123455555555555555554 7788887655443 22211111134566666
Q ss_pred HHhccCCC
Q 000369 999 KQLTGLSG 1006 (1610)
Q Consensus 999 ~~l~~~~~ 1006 (1610)
.+..-.++
T Consensus 806 Dla~mfpk 813 (858)
T COG5215 806 DLAGMFPK 813 (858)
T ss_pred HHHHhCCC
Confidence 65555555
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-06 Score=117.17 Aligned_cols=242 Identities=19% Similarity=0.187 Sum_probs=168.5
Q ss_pred HHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhC--hhHH
Q 000369 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1610)
Q Consensus 718 v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G--~~l~ 795 (1610)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...++.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456677765 899999999999998764 32 2466777777 999999999999999877632221 1222
Q ss_pred HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHH
Q 000369 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale 875 (1610)
..|.+-.|......-..+..+.. .-+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~----------------------------------~~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA----------------------------------GDAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc----------------------------------CCHHHHHHHhcCCCHHHHHHHHH
Confidence 33333222222222111111100 00134667889999999999999
Q ss_pred HHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHH
Q 000369 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1610)
Q Consensus 876 ~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~a 955 (1610)
.|..+- . ...|...+.|.+..|+..++..|+.+...-. ..++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987541 1 1235567899999999999998887744211 22677888999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000369 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1610)
Q Consensus 956 a~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~ 1035 (1610)
|..+|..+.. ...+.+.+..+|.++ +|.+|..++..|... +. .+.+.+|..+|.|.+.+||.+|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9998876622 233456688888876 699999999888742 21 3345678899999999999999999
Q ss_pred HHHH
Q 000369 1036 IVEI 1039 (1610)
Q Consensus 1036 l~~l 1039 (1610)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-05 Score=101.33 Aligned_cols=453 Identities=15% Similarity=0.171 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHH
Q 000369 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 463 (1610)
Q Consensus 384 ~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~ 463 (1610)
++....+-..... ..++..+.++...+.+++...|.-..-++..+....+. .+.-++..+.+-+.++++.+|.
T Consensus 25 ~~l~kli~~~~~G--~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-----~~~l~~n~l~kdl~~~n~~~~~ 97 (526)
T PF01602_consen 25 EALKKLIYLMMLG--YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-----LLILIINSLQKDLNSPNPYIRG 97 (526)
T ss_dssp HHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-----HHHHHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHHcC--CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHhhcCCCHHHHH
Confidence 3444444433322 45667777787888888888888777777766554332 1244677788888888888888
Q ss_pred HHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccC
Q 000369 464 AAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 543 (1610)
Q Consensus 464 aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~ 543 (1610)
.|..+++.+. ...+.+.
T Consensus 98 lAL~~l~~i~----~~~~~~~----------------------------------------------------------- 114 (526)
T PF01602_consen 98 LALRTLSNIR----TPEMAEP----------------------------------------------------------- 114 (526)
T ss_dssp HHHHHHHHH-----SHHHHHH-----------------------------------------------------------
T ss_pred HHHhhhhhhc----ccchhhH-----------------------------------------------------------
Confidence 8888776544 2111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHH
Q 000369 544 GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAIS 623 (1610)
Q Consensus 544 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~ 623 (1610)
+.+.+.+.|.|.+|-.|..|+.
T Consensus 115 ----------------------------------------------------------l~~~v~~ll~~~~~~VRk~A~~ 136 (526)
T PF01602_consen 115 ----------------------------------------------------------LIPDVIKLLSDPSPYVRKKAAL 136 (526)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHSSSHHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHhcCCchHHHHHHHH
Confidence 1134556667777777888877
Q ss_pred HHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhhhcc--chhhH
Q 000369 624 SLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-FPKKCVVLCLLGISERVAD--IKTRA 700 (1610)
Q Consensus 624 ~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~-~~~~~~~~il~~LveKlgd--~K~r~ 700 (1610)
.+.+++....+.-... ++..+.. -+.|+|..|...++.++..+ . +.+ ........++..|..-+++ +-.+-
T Consensus 137 ~l~~i~~~~p~~~~~~--~~~~l~~--lL~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~ 210 (526)
T PF01602_consen 137 ALLKIYRKDPDLVEDE--LIPKLKQ--LLSDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQI 210 (526)
T ss_dssp HHHHHHHHCHCCHHGG--HHHHHHH--HTTHSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHhccCHHHHHHH--HHHHHhh--hccCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence 7777776633321111 2222211 24677777877777777766 2 111 0001222222222222222 23344
Q ss_pred HHHHHHHHHHhhhCh----hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHH
Q 000369 701 HAMKCLTTFSEAVGP----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776 (1610)
Q Consensus 701 ~a~~~L~~l~e~~~~----~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR 776 (1610)
.+.++|..++..... ..+++.+...+ .+.++-|+-+++..+..+-.... -+..++..+.++ +.++++++|
T Consensus 211 ~il~~l~~~~~~~~~~~~~~~~i~~l~~~l-~s~~~~V~~e~~~~i~~l~~~~~----~~~~~~~~L~~l-L~s~~~nvr 284 (526)
T PF01602_consen 211 KILRLLRRYAPMEPEDADKNRIIEPLLNLL-QSSSPSVVYEAIRLIIKLSPSPE----LLQKAINPLIKL-LSSSDPNVR 284 (526)
T ss_dssp HHHHHHTTSTSSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHH-HTSSSHHHH
T ss_pred HHHHHHHhcccCChhhhhHHHHHHHHHHHh-hccccHHHHHHHHHHHHhhcchH----HHHhhHHHHHHH-hhcccchhe
Confidence 444455444332111 22455555554 57788888888887764332111 245667777788 889999999
Q ss_pred HHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccch
Q 000369 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP 856 (1610)
Q Consensus 777 ~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~ 856 (1610)
-.+...+..+.....+.+. ... -
T Consensus 285 ~~~L~~L~~l~~~~~~~v~------------~~~---------------------------------------------~ 307 (526)
T PF01602_consen 285 YIALDSLSQLAQSNPPAVF------------NQS---------------------------------------------L 307 (526)
T ss_dssp HHHHHHHHHHCCHCHHHHG------------THH---------------------------------------------H
T ss_pred hhHHHHHHHhhcccchhhh------------hhh---------------------------------------------h
Confidence 9998887766543211110 000 0
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-cHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds-n~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
.+.-...+.+-.+|..+++-+..++...| ..+++..|...+.+. +..++..++..|+.++....+.. .
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~----~ 376 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLANESN-------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA----E 376 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH----H
T ss_pred hhheecCCCChhHHHHHHHHHhhcccccc-------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH----H
Confidence 11111224555688899999999887532 577888888888655 55688999999999988765444 4
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhh
Q 000369 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1610)
Q Consensus 936 ~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l--~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (1610)
.++..+++.+..+...+...+...+..++...+- ...+..+...+.+-. .+..+..++..+.++-..........++
T Consensus 377 ~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~~~~~~~~ 455 (526)
T PF01602_consen 377 WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDIS-SPEALAAAIWILGEYGELIENTESAPDI 455 (526)
T ss_dssp HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTTTTHHHHH
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccccccHHHH
Confidence 4567777777778788899999999998887652 446777888887643 5777777777777765444321124455
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCh
Q 000369 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1045 (1610)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~ 1045 (1610)
+..+...+.+.+.+||...-.++..+....+.
T Consensus 456 ~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 456 LRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 56677788888999999999999999988874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-07 Score=103.22 Aligned_cols=181 Identities=18% Similarity=0.257 Sum_probs=149.6
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
..+..|++++|....+++..+..+.. .++......+++++-++.+-+++.++.|...||.+++.|++.++..+.+.+..
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999998876 34555555579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCC----chhh
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP----DAAH 1012 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~----~~~~ 1012 (1610)
++..|+.+-++.|.+||+.|..+|.+|+.++.+..+++.|..++++. ++..|.........++..++-.+ ...+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999976 67777776666655555543211 1223
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 1013 LLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 1013 ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
++..+-.-+.|+-+.+|++|...+....
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhHH
Confidence 3344556778999999999887665443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.001 Score=79.75 Aligned_cols=467 Identities=13% Similarity=0.127 Sum_probs=248.7
Q ss_pred HHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcch--hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHH
Q 000369 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (1610)
Q Consensus 330 L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~--~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~ 406 (1610)
.....+ +....|+..|++|+-.=..-.+..|. -....++....+........++.++..|+..++.-........++
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445 77778888888888775555566665 235567888888888888899999999999987531122233333
Q ss_pred H-----HHHHhhcCChHHHHHHHHHHHHHHHh-CChhH--------------HH-HhhhhHHHHHHHhhcC-------CC
Q 000369 407 D-----VKTSVKNKVPLVRSLTLNWVTFCIET-SSKAA--------------VL-KVHKDYVPICMECLND-------GT 458 (1610)
Q Consensus 407 ~-----l~~~l~~Knp~vR~~~l~~L~~~l~~-~~~~~--------------l~-~~l~~l~p~l~~~l~D-------~~ 458 (1610)
. ...++++.|-+++.++.+|-....+. ..-.- +. ...+.++|.+.++|.. -+
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 2 23567899999999999988554432 21100 00 1234566666666522 12
Q ss_pred hHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhh
Q 000369 459 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 538 (1610)
Q Consensus 459 ~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~ 538 (1610)
=.+-.+|..||..|....|+..++|.+
T Consensus 342 Wn~smaA~sCLqlfaq~~gd~i~~pVl----------------------------------------------------- 368 (858)
T COG5215 342 WNPSMAASSCLQLFAQLKGDKIMRPVL----------------------------------------------------- 368 (858)
T ss_pred cchhhhHHHHHHHHHHHhhhHhHHHHH-----------------------------------------------------
Confidence 245566777777777777765443322
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHH
Q 000369 539 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 618 (1610)
Q Consensus 539 ~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~R 618 (1610)
+-+.+.+.+.+|..|
T Consensus 369 -----------------------------------------------------------------~FvEqni~~~~w~nr 383 (858)
T COG5215 369 -----------------------------------------------------------------GFVEQNIRSESWANR 383 (858)
T ss_pred -----------------------------------------------------------------HHHHHhccCchhhhH
Confidence 112345667789999
Q ss_pred HHHHHHHHHHHHhccccc--h-hHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc
Q 000369 619 LEAISSLRQQVEAVQNLD--Q-SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD 695 (1610)
Q Consensus 619 l~a~~~L~~~~~~~~~~~--~-~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd 695 (1610)
..|+-.+.+...+....- . ..+.+-.++. ...|+-..|....-..+..+++.. +..++++++
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n---~m~D~~l~vk~ttAwc~g~iad~v------------a~~i~p~~H 448 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN---EMSDSCLWVKSTTAWCFGAIADHV------------AMIISPCGH 448 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH---hcccceeehhhHHHHHHHHHHHHH------------HHhcCcccc
Confidence 999999988876633210 0 0111111110 123444444443333333333321 112222222
Q ss_pred chhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCC-----CC---hHhHHHHHHh-c
Q 000369 696 IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-----LK---LKDLIDFCKD-T 766 (1610)
Q Consensus 696 ~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~-----l~---~k~li~~l~~-~ 766 (1610)
.- . +.+..+-++ .-+|++...|.-..-.++..|.... +- -..++.-+.+ .
T Consensus 449 l~--~-----------------~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t 507 (858)
T COG5215 449 LV--L-----------------EVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGT 507 (858)
T ss_pred cc--H-----------------HHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Confidence 10 0 000000110 1122222222222222222221100 00 0112221111 0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCC--C--CCC--------------CCCCccc
Q 000369 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNP--F--EGT--------------VVPKKTV 828 (1610)
Q Consensus 767 gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~--~--~~~--------------~~p~r~~ 828 (1610)
.+.....+.|.++-..+++|-.+..+.+.+.+.++-...++-|+.-..-.. . +.. .+-.|.
T Consensus 508 ~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~- 586 (858)
T COG5215 508 ELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT- 586 (858)
T ss_pred HhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 012223455667777777776666665555554444444433333211100 0 000 000010
Q ss_pred cCccCcCCCCCCCCCCCCc--cccccccchHHHhhcCCCC-hhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc
Q 000369 829 RASESTSSVSSGGSDGLPR--EDISGKFTPTLVKSLESPD-WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1610)
Q Consensus 829 r~~~~~~~~~~~~~d~~pr--~dIs~~l~~~ll~~l~d~~-Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~ 905 (1610)
.+| .++.++|..-|+..++.++ --.-.+.+..+..+...-.+++... ...+++.|..-|+
T Consensus 587 ----------------~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y-~~~fiPyl~~aln 649 (858)
T COG5215 587 ----------------RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQY-ASKFIPYLTRALN 649 (858)
T ss_pred ----------------cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhc
Confidence 011 2344556666677666653 2233444445555544211222111 2456777777777
Q ss_pred cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000369 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 906 Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~--~Vr~aa~~aL~~~~~~~~ 968 (1610)
-....|...|+..++.|+..||.+|.+|...++..+.+++..... .+.-+...+...++-++|
T Consensus 650 ~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaig 714 (858)
T COG5215 650 CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIG 714 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHh
Confidence 778889999999999999999999999999999999999986543 477788888888888877
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0018 Score=84.75 Aligned_cols=479 Identities=13% Similarity=0.072 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHH
Q 000369 382 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 461 (1610)
Q Consensus 382 V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~V 461 (1610)
.++++...+..+... .....++++++..+.+++..+|.-+..++.++.+..+... -..+..+.+-+.|++|-|
T Consensus 49 kk~alKkvIa~mt~G--~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~d~Np~I 121 (746)
T PTZ00429 49 KKAAVKRIIANMTMG--RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTTNSSPVV 121 (746)
T ss_pred HHHHHHHHHHHHHCC--CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcCCCCHHH
Confidence 345555555555432 5677889999999999999999999999888765443211 245788899999999999
Q ss_pred HHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccc
Q 000369 462 RDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASM 541 (1610)
Q Consensus 462 R~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~ 541 (1610)
|.-|..+|+. ++...+ ++.+-. -|+
T Consensus 122 RaLALRtLs~----Ir~~~i---~e~l~~----~lk-------------------------------------------- 146 (746)
T PTZ00429 122 RALAVRTMMC----IRVSSV---LEYTLE----PLR-------------------------------------------- 146 (746)
T ss_pred HHHHHHHHHc----CCcHHH---HHHHHH----HHH--------------------------------------------
Confidence 9999988754 232222 111111 112
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHH
Q 000369 542 LSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621 (1610)
Q Consensus 542 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a 621 (1610)
++|.|.+--.|..|
T Consensus 147 ------------------------------------------------------------------k~L~D~~pYVRKtA 160 (746)
T PTZ00429 147 ------------------------------------------------------------------RAVADPDPYVRKTA 160 (746)
T ss_pred ------------------------------------------------------------------HHhcCCCHHHHHHH
Confidence 22222222233333
Q ss_pred HHHHHHHHHhccccc---hhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhhhcc--c
Q 000369 622 ISSLRQQVEAVQNLD---QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I 696 (1610)
Q Consensus 622 ~~~L~~~~~~~~~~~---~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~ 696 (1610)
+-.+.+++....+.. ...+.+..+ +.|+|..|...++.+|..+....++.. ......+..++..+.+ .
T Consensus 161 alai~Kly~~~pelv~~~~~~~~L~~L------L~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~E 233 (746)
T PTZ00429 161 AMGLGKLFHDDMQLFYQQDFKKDLVEL------LNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNE 233 (746)
T ss_pred HHHHHHHHhhCcccccccchHHHHHHH------hcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCCh
Confidence 333333332211100 001112221 245666666666666655554322210 1112222333333332 1
Q ss_pred hhhHHHHHHHHHHHh--hhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHH----HHHHhcCCCC
Q 000369 697 KTRAHAMKCLTTFSE--AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI----DFCKDTGLQS 770 (1610)
Q Consensus 697 K~r~~a~~~L~~l~e--~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li----~~l~~~gl~~ 770 (1610)
-.+-...++|..+.- ......+++.+.+.+ .|.|+-|..+++..+..+....... -++.++ ..+.. |.+
T Consensus 234 W~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il~l~~~~~~~--~~~~~~~rl~~pLv~--L~s 308 (746)
T PTZ00429 234 WGQLYILELLAAQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVANLASRCSQE--LIERCTVRVNTALLT--LSR 308 (746)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCcCCHH--HHHHHHHHHHHHHHH--hhC
Confidence 122222233322100 001124566666664 7899999999998877654221100 012222 12222 556
Q ss_pred CcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCcccc
Q 000369 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1610)
Q Consensus 771 ~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dI 850 (1610)
+++++|-.+...+..+-... +. .+...++..|-+... |. -+|..+-. . .........+
T Consensus 309 s~~eiqyvaLr~I~~i~~~~-P~----------lf~~~~~~Ff~~~~D--p~-yIK~~KLe--I------L~~Lane~Nv 366 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIF-PN----------LLRTNLDSFYVRYSD--PP-FVKLEKLR--L------LLKLVTPSVA 366 (746)
T ss_pred CCccHHHHHHHHHHHHHHHC-HH----------HHHHHHHhhhcccCC--cH-HHHHHHHH--H------HHHHcCcccH
Confidence 78899999988775554322 11 111122222222211 10 00000000 0 0000000011
Q ss_pred ccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhH
Q 000369 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (1610)
Q Consensus 851 s~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~ 930 (1610)
..|..+|.+-..+.+-..|.+++..++.+... + +......+..|...+.+.. .++.+++.++..|.+.....
T Consensus 367 -~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k----~-~~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~~- 438 (746)
T PTZ00429 367 -PEILKELAEYASGVDMVFVVEVVRAIASLAIK----V-DSVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPEL- 438 (746)
T ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh----C-hHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCccH-
Confidence 12345566556677777888888888877642 1 2224567777777776543 34556677776665543221
Q ss_pred HHhhhhHHHHHHHHhC-C--CcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCC
Q 000369 931 EKSSKGVLSDILKCLG-D--NKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1610)
Q Consensus 931 ~~~~~~llp~ll~~l~-D--~k~~Vr~aa~~aL~~~~~~~~-l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1610)
.++..++..+. + ..+..+.+..=.|..+.+.+. ...++..+...+.+. ++.+|..++....+++-..+.
T Consensus 439 -----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E--~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 439 -----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEH--EQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred -----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccC--CHHHHHHHHHHHHHHHhcCcH
Confidence 13445544331 1 223344444444444444332 122333333333333 578898888888887766542
Q ss_pred CCchhhhHHHHHH-hc-CCCCHHHHHHHHHHHHHH
Q 000369 1007 FPDAAHLLKPASI-AM-TDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1007 ~~~~~~ll~pl~~-~L-~D~~~dVR~aA~~~l~~l 1039 (1610)
+....+..++. |. .|.|+|||.-|..-...+
T Consensus 512 --~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 512 --GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred --HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 34556666664 44 467889999998554433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=94.53 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=106.4
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
.+...+.|++|.+|..++..|..+ .. .+.+..|...|.|.+..|+..|+..|+.+ + .....
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~--------~~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI--------ND---EAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc--------CC---HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHH
Confidence 455567888999999988888533 11 56788888888999999999888888776 1 11336
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
.++.|+..+.|.+..||.+|..+|.. ++-...+|.|...|+++ + .|..++.-|.+ ++. ...++.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~--~--~~~~a~~ALg~----ig~----~~a~p~ 256 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG--T--VGDLIIEAAGE----LGD----KTLLPV 256 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC--c--hHHHHHHHHHh----cCC----HhHHHH
Confidence 77888888999999999998888865 35567889999998865 2 46666655543 332 345555
Q ss_pred HHHhcC-CCCHHHHHHHHHHHH
Q 000369 1017 ASIAMT-DKSSDVRKAAEACIV 1037 (1610)
Q Consensus 1017 l~~~L~-D~~~dVR~aA~~~l~ 1037 (1610)
+...++ +.++.||..|.+++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 667774 778999999888764
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-05 Score=98.40 Aligned_cols=293 Identities=14% Similarity=0.163 Sum_probs=190.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhccc---cchhHHHH---HHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCch
Q 000369 606 TVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEIL---VRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679 (1610)
Q Consensus 606 l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~---~~~~~~~l---v~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~ 679 (1610)
+...+.+.-|.-|.+......+.-..... .....+.+ ++.+ ..|+|..|..........+....+ ..
T Consensus 360 ~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l-----v~d~~~~vr~a~a~~~~~~~p~~~--k~ 432 (759)
T KOG0211|consen 360 VSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL-----VLDNALHVRSALASVITGLSPILP--KE 432 (759)
T ss_pred HHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH-----HhcccchHHHHHhccccccCccCC--cC
Confidence 44566677777777776666554433221 00011111 2222 256676666655544433322221 12
Q ss_pred hhHHHHHHHHHhhhcc--chhhHHHHHHH---HHHHhhhChhhHHHHHHhhhh---cCCCHhHHHHHHHHHHHHHHHhCC
Q 000369 680 KCVVLCLLGISERVAD--IKTRAHAMKCL---TTFSEAVGPGFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGV 751 (1610)
Q Consensus 680 ~~~~~il~~LveKlgd--~K~r~~a~~~L---~~l~e~~~~~~v~~~l~~~l~---~~knpKv~~~~l~~l~~~i~~fg~ 751 (1610)
+.+..++|..+.-+-| ..++....+.+ ...-+..|...+.+.+++.+. ...+|++|.+.+.++..+..++|.
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~ 512 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGV 512 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666555 34565555333 223334566666666666542 355899999999999999999996
Q ss_pred CCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCc
Q 000369 752 SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1610)
Q Consensus 752 ~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~ 831 (1610)
..++-+ +-+.+... +.+.--+||++|...+..+-...|..- ..
T Consensus 513 ~~~~~~-~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~w-~~---------------------------------- 555 (759)
T KOG0211|consen 513 EFFDEK-LAELLRTW-LPDHVYSIREAAARNLPALVETFGSEW-AR---------------------------------- 555 (759)
T ss_pred HHhhHH-HHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcch-hH----------------------------------
Confidence 544432 55666665 788888999999999988877777321 00
Q ss_pred cCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhH
Q 000369 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNL 911 (1610)
Q Consensus 832 ~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v 911 (1610)
..+.+.++....+.+|..|..-+..+..++.-.+..+.- .+|++.+.....|...+|
T Consensus 556 --------------------~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~---~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 556 --------------------LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC---EDLLPVFLDLVKDPVANV 612 (759)
T ss_pred --------------------HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH---HHHhHHHHHhccCCchhh
Confidence 013455667667779999999999998776543232222 568888888899999999
Q ss_pred HHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000369 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1610)
Q Consensus 912 ~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~ 967 (1610)
+-.+++.+..+.+.+-.+... +.+.|.+.....|+...||-.|..+...+....
T Consensus 613 R~nvak~L~~i~~~L~~~~~~--~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDESVRD--EEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred hhhHHHHHHHHHhhcchHHHH--HHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 999999999999888765332 355666666667999999999999998887553
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.002 Score=84.33 Aligned_cols=444 Identities=14% Similarity=0.123 Sum_probs=241.6
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
++.+.|.+.+-..|++|+.++-..+..+ .+...++.-..+.+.-.|..++....-.+...+ +.-...+-.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G------~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya----~~~pelalL 105 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMG------RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTA----RLQPEKALL 105 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCC------CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----ccChHHHHH
Confidence 4566677777778889998877766432 234555555555566566666665544444432 222234556
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
.+..+.+-+.|+++.||.-|..+|..+...--++.+++.+..++.++ +|-+|+.++-.+.+++...+..-....++.-
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~--~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADP--DPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 78889999999999999998888766532211234445556666665 7999999999999887665532112234555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCh------HHHHHHh---hcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQ------ETIEKNL---KDIQGPALALILERIKLNGASQVSMGPTSKSSSKV 1087 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~~~~G~------~~~~~~l---~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 1087 (1610)
+..+|.|+++.|..+|..+|..+...-+. ..+.+.+ .++++=.+-.|.+.+..+.|.. ..
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-------~~---- 252 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-------KE---- 252 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-------cH----
Confidence 77789999999999999999988765431 2222222 3334444555666665543311 00
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhh---ccccccCCC-ChHH-Hh---hhh-hccccccCCChh
Q 000369 1088 PKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS---QALLNVKDS-NKED-RE---RMV-VRRFKFEDPRIE 1158 (1610)
Q Consensus 1088 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~k~~-R~---~~~-~~k~~~~~p~~e 1158 (1610)
.. ...-.+..+.=.++ .+++-- ..++...+. ..+. +. |+. ++ ..... ++-
T Consensus 253 -----e~------~~il~~l~~~Lq~~--------N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL-v~L~s-s~~ 311 (746)
T PTZ00429 253 -----SA------ETLLTRVLPRMSHQ--------NPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL-LTLSR-RDA 311 (746)
T ss_pred -----HH------HHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH-HHhhC-CCc
Confidence 00 00000000000000 000000 011111111 1111 00 100 00 00110 111
Q ss_pred hHHH--HH--HHHH----hhhhHHHHHhhc---cccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHH
Q 000369 1159 QIQE--LE--NDMM----KYFREDLHRRLL---STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTC 1227 (1610)
Q Consensus 1159 ~~e~--L~--~q~~----~~~~~~l~~~l~---s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v 1227 (1610)
++.. |+ ..+. ..|..+ +...| +....-+...++.|....... |++.|++=|..-..|.+..+
T Consensus 312 eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~------Nv~~IL~EL~eYa~d~D~ef 384 (746)
T PTZ00429 312 ETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVTPS------VAPEILKELAEYASGVDMVF 384 (746)
T ss_pred cHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcCcc------cHHHHHHHHHHHhhcCCHHH
Confidence 1211 11 0111 112222 11111 222235777777777665432 22233333333334777777
Q ss_pred HHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChHHHHHHHHHHHHHHHhcCCccccHHHHHhcc---cCCc
Q 000369 1228 LLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL---RSKN 1304 (1610)
Q Consensus 1228 ~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~~vr~~v~~il~~~~~~~~~~kv~~~l~~gl---~sKn 1304 (1610)
..++...+..+-..+. .-+..++..|+.-+++..+.+.+ +-.+++.|..-||...++..|++.+ .-..
T Consensus 385 ~r~aIrAIg~lA~k~~--------~~a~~cV~~Ll~ll~~~~~~v~e-~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e 455 (746)
T PTZ00429 385 VVEVVRAIASLAIKVD--------SVAPDCANLLLQIVDRRPELLPQ-VVTAAKDIVRKYPELLMLDTLVTDYGADEVVE 455 (746)
T ss_pred HHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHCccHHHHHHHHHhhccccccc
Confidence 7777777776543332 24677888887777765554444 4456677777899877777777543 4567
Q ss_pred hhhHHHHHHHHHHHHHhhCCCcccccchHHHHHhhhcCCchHHHHHHHHHHHHHHHhcCh
Q 000369 1305 NRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGE 1364 (1610)
Q Consensus 1305 ~r~r~e~l~~l~~li~~~G~~~~~~~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~ 1364 (1610)
+..|+.++=.||..-+... .-...|........+-++.||-+.|++.+-+|....+
T Consensus 456 ~~AKaaiiWILGEy~~~I~----~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 456 EEAKVSLLWMLGEYCDFIE----NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred HHHHHHHHHHHHhhHhhHh----hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 8888886665665432211 1123454444555667889999999999999988764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=91.56 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=124.6
Q ss_pred chhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000369 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1610)
Q Consensus 288 ~~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~l 367 (1610)
+.+.+.+.+.+...|.+++..|..+-. .+++..+.+.+.|.|..++..|+.+++.|...-+. ....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~---------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG---------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc---------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 467788999999999999999976532 35667777778899999999999999997531110 2356
Q ss_pred HHHHHHH-hccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhH
Q 000369 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1610)
Q Consensus 368 lp~Ll~k-lkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1610)
+|.|... +.|+-..||.++..+|..+..........+++.+...+.+++|.||..++..|..+ +. +..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC-------HHH
Confidence 7777766 68999999999999988774332223456777788888999999999988877532 11 456
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 447 ~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
++.|..+++|.++.||..|..+|+.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999987
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.054 Score=68.12 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChH
Q 000369 381 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 381 ~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~ 460 (1610)
-.++|..-.+.-|+.. .....++|++.....+||+.+|.-.--+|-+..+..+.-.+. =+..+.+.|.|+|+.
T Consensus 51 ~KleAmKRIia~iA~G--~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 51 LKLEAMKRIIALIAKG--KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHHHhcC--CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHH
Confidence 3456665555555543 668899999999999999999999999999998876543221 145788999999999
Q ss_pred HHHHHHHHHHHHH
Q 000369 461 VRDAAFSVLAAIA 473 (1610)
Q Consensus 461 VR~aA~~al~~l~ 473 (1610)
+|..|..+|..|-
T Consensus 124 iRasALRvlSsIR 136 (968)
T KOG1060|consen 124 IRASALRVLSSIR 136 (968)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999886543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.013 Score=73.40 Aligned_cols=383 Identities=16% Similarity=0.162 Sum_probs=211.0
Q ss_pred hhcCCcHHHH-HHHHHHHHHHHHHhchhhhhhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhhhhhh-hH--HHHHHH
Q 000369 60 TVADSNAPVQ-DKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVD-VF--LDVMEK 135 (1610)
Q Consensus 60 ~v~DsN~~~q-~~~leal~~~v~~~~~~~~~~~~~v~~~lveK~l~~k~~~k~~a~~~ll~~~e~~~~~-~v--~~~L~~ 135 (1610)
.+-|||.... --|+.-+++.+.+ |.++..++.+|+..+..| ...+|..--=-|+.|.|- +++ .. +..+-+
T Consensus 42 ~lLdSnkd~~KleAmKRIia~iA~-G~dvS~~Fp~VVKNVask----n~EVKkLVyvYLlrYAEe-qpdLALLSIntfQk 115 (968)
T KOG1060|consen 42 QLLDSNKDSLKLEAMKRIIALIAK-GKDVSLLFPAVVKNVASK----NIEVKKLVYVYLLRYAEE-QPDLALLSINTFQK 115 (968)
T ss_pred HHHhccccHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhhcc----CHHHHHHHHHHHHHHhhc-CCCceeeeHHHHHh
Confidence 4456665543 3344444444433 334566666666666544 688888888889999984 444 22 456678
Q ss_pred HhhcCChhhHHHHHHHHHHHHHHhCCCCcChhh-HHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHH------
Q 000369 136 AIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR-ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL------ 208 (1610)
Q Consensus 136 ~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~-il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l------ 208 (1610)
+++.+||-+++.||.+|.. .++--+-| +|-.+.++..|..+-||.+|...+..+|.--.+ -+..|
T Consensus 116 ~L~DpN~LiRasALRvlSs------IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~ 187 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSS------IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKK 187 (968)
T ss_pred hhcCCcHHHHHHHHHHHHh------cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHH
Confidence 9999999999999999873 33333445 455677899999999999999999999954322 11111
Q ss_pred ----------------hhhChHHHHHHHHHHHHhcCCCC-------------CCcccchhhhhHhhhhhccccCCCCCCC
Q 000369 209 ----------------FEKMRDTMKKELEVELVNVSGTA-------------RPTRKIRAEQDKELGQELISEDVGPGPS 259 (1610)
Q Consensus 209 ----------------~~~lk~~q~kele~~f~~~~~~~-------------~p~r~~rs~~~~~~~~~a~~~~~~~~~~ 259 (1610)
|+..=|-.++-|.+-|-++..-- .=+||-|.+-.++.......+..| .+
T Consensus 188 LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~--~~ 265 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG--RS 265 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc--cc
Confidence 11222223333333333321000 014444433221100000000000 00
Q ss_pred CCCCCCCCCCCCCccCCCcccccCcCccchhhhh--------------hccC-ChHHHHHH-------------------
Q 000369 260 EESTADVPPEIDEYELVDPVDILTPLEKSGFWEG--------------VKAT-KWSERKDA------------------- 305 (1610)
Q Consensus 260 ~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~--------------l~s~-kW~~R~ea------------------- 305 (1610)
........+--.||-.-+.++++=+=.++-||.. +..+ +-+.-.++
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~vqyvvL~nI 345 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREVQYVVLQNI 345 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 0000000000011111111111100000011110 0000 00000111
Q ss_pred --------------------------------HHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHH
Q 000369 306 --------------------------------VAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353 (1610)
Q Consensus 306 --------------------------------l~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La 353 (1610)
|+-|..|++ .++...|++.|+..|++....++..|+++||..|
T Consensus 346 a~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~-----esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 346 ATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLAN-----ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA 420 (968)
T ss_pred HHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhh-----hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 112222221 2457788888888999776679999999999999
Q ss_pred HHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhh-cCChHHHHHHHHHHHHHHH
Q 000369 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 354 ~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~ 432 (1610)
...+. ....++.+|+..++.....|..++...+..++......-.+++-.+...++ -+.|.-|..++..+....+
T Consensus 421 ~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 421 SRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred HhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 87763 567899999999999999999888899999887611112235566666665 3557777666544444443
Q ss_pred hCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
. +.+..+.++..+.+-..|-..+||-.....-..+
T Consensus 497 ~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 497 I-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred h-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 3 2344577777888888888888887666554443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0045 Score=73.50 Aligned_cols=190 Identities=16% Similarity=0.101 Sum_probs=138.1
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~~~k---i~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~--~~f~~~ 363 (1610)
++.+.+.+++=+.|.++|..+..++.... .....+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 56667788999999999999988763222 2235578899999999985555667889999999999987 445567
Q ss_pred hhhHHHHHHHHhccCcH--HHHHHHHHHHHHHHHhcCCChH------hhHHHHHHHh--h----------cCChHHHHHH
Q 000369 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSV--K----------NKVPLVRSLT 423 (1610)
Q Consensus 364 ~~~llp~Ll~klkdkk~--~V~~aa~~al~ai~~~~~~~l~------~vl~~l~~~l--~----------~Knp~vR~~~ 423 (1610)
...+.|.|..-+.|... .+|.++..||..+.-.++...+ ++++.|+... + ..++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 78888888888887643 4556665555554322233333 3344332221 1 1235788888
Q ss_pred HHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 424 l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
+.--..++...+...+...+...+|.+..+|+..+.+||-+|-++++.++....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 7777777877777667777788999999999999999999999999999988774
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.19 Score=64.16 Aligned_cols=396 Identities=15% Similarity=0.159 Sum_probs=233.4
Q ss_pred HHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcc
Q 000369 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 801 (1610)
Q Consensus 722 l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~l 801 (1610)
++..+ +..+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+.
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~------ 113 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQ------ 113 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHH------
Confidence 44443 344666677778888888876654433 4567777877 49999999999998875554322111000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHH
Q 000369 802 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 881 (1610)
Q Consensus 802 kp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll 881 (1610)
-+ .. ..+-+.++..+.+.+-.+.+.|+..|..+.
T Consensus 114 -------------~~-----------------------------~~----~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 114 -------------LL-----------------------------VD----NELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred -------------Hh-----------------------------cC----ccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 00 00 013345667788999999999999999887
Q ss_pred HHccccCCCCCh-hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh--hHHHHHHHHhCCCcHHHHHHHHH
Q 000369 882 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLT 958 (1610)
Q Consensus 882 ~~a~~~i~~~~~-~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~--~llp~ll~~l~D~k~~Vr~aa~~ 958 (1610)
... ..+ ...| .++...|...+..+|..++...+.++..++..-...+ .++. .+++.++..+.+....|+-.+.+
T Consensus 148 ~~~-~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 111 0000 2236777777776677888888888877765433333 4444 49999999999988999999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCcCCh-hhHHHHHHHHHHHhccCCC--CCch----hhhHHHHHHhcCCCC
Q 000369 959 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FPDA----AHLLKPASIAMTDKS 1025 (1610)
Q Consensus 959 aL~~~~~~~~-l-----~~ll~~l~~~L~~~~~~~-~~R~~~l~~L~~~l~~~~~--~~~~----~~ll~pl~~~L~D~~ 1025 (1610)
.+..++..-. . ..+++.|...+.+...+| -....+.+.+ .++.++.. ...+ ..++..+...++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999987432 1 235667777776544455 2222222222 12222211 1122 233334556678899
Q ss_pred HHHHHHHHHHHHHHHHHh-ChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000369 1026 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1104 (1610)
Q Consensus 1026 ~dVR~aA~~~l~~l~~~~-G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 1104 (1610)
...+..|.++++.+.... |...+ ..+-.+.-+..+..+.+..+..
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~~------------------------------- 349 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKSG------------------------------- 349 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcCC-------------------------------
Confidence 999999999999887543 22222 1222223233333322221110
Q ss_pred ccCCCCCCCCCCCccccchhhhhhccccccCCCChHHHhh-hhhcc-c--cccCCChhhHHHHHHHHHhhhhH---H-HH
Q 000369 1105 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRE---D-LH 1176 (1610)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~-~~~~k-~--~~~~p~~e~~e~L~~q~~~~~~~---~-l~ 1176 (1610)
+ .+-|.+ +..+. + ...++..+++..+...+...++. . ++
T Consensus 350 --------~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l 396 (503)
T PF10508_consen 350 --------S-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLL 396 (503)
T ss_pred --------c-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHH
Confidence 0 000000 00000 0 00111223332333333333322 1 33
Q ss_pred HhhccccHH-HHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHh
Q 000369 1177 RRLLSTDFK-KQVDGLEMLQKALPS-IRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1610)
Q Consensus 1177 ~~l~s~d~~-~r~~~l~~L~~~l~~-~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~ 1243 (1610)
-.+....|- -|++|+..|...+.. |.-..+.+..-++.|++.|-.|++..+...-+++++.|.....
T Consensus 397 ~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 444467765 499999999988765 3444455677799999999999999999999999998776554
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0078 Score=73.98 Aligned_cols=331 Identities=16% Similarity=0.161 Sum_probs=215.0
Q ss_pred cchHHHhhcC-CCChhHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhH
Q 000369 854 FTPTLVKSLE-SPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930 (1610)
Q Consensus 854 l~~~ll~~l~-d~~Wk~R~eale~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~ 930 (1610)
+.+.|...+. +.+-+.+.+|.-.|-.|..+.. .+.... ...++.|...+..++..|+.+|.-+++.++.- ++.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~ 186 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDC 186 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc--CCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHH
Confidence 4466777775 6678889999999999987421 111111 34567788999999999999999998888753 5667
Q ss_pred HHhhh--hHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHH
Q 000369 931 EKSSK--GVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1610)
Q Consensus 931 ~~~~~--~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~~~~-------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1610)
..|+. ..+++++..+....+ .+...+.=+|..+.+... +..++|.|...+.+. ++++...++..+..+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 77765 478889988887775 455556678888887652 456788888888866 688888888777654
Q ss_pred hccCCCCCc--h-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCC
Q 000369 1001 LTGLSGFPD--A-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSM 1077 (1610)
Q Consensus 1001 l~~~~~~~~--~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~ 1077 (1610)
.+.....-. + ...+.-++.+|...+..|+..|-.+++.+. .|.+.....+ ++......+..++...
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv--tG~d~QTq~v--i~~~~L~~l~~ll~~s------- 333 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV--TGSDEQTQVV--INSGALPVLSNLLSSS------- 333 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee--eccHHHHHHH--HhcChHHHHHHHhccC-------
Confidence 444433211 1 123334888999999999988877777643 5665544443 2222222222221100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccccccCCCChHHHhhhhhccccccCCCh
Q 000369 1078 GPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRI 1157 (1610)
Q Consensus 1078 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~~~~p~~ 1157 (1610)
+...- .|+ -=|.....+.
T Consensus 334 -------------------------------~~~~i------------------------kkE-------AcW~iSNItA 351 (514)
T KOG0166|consen 334 -------------------------------PKESI------------------------KKE-------ACWTISNITA 351 (514)
T ss_pred -------------------------------cchhH------------------------HHH-------HHHHHHHhhc
Confidence 00000 000 1143322222
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHH--HHHHHHHHHhccCCcHHHHHHHHhHH
Q 000369 1158 EQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL--DILLRWFVLQFCKSNTTCLLKVLEFL 1235 (1610)
Q Consensus 1158 e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~l--Dlllk~~~~r~~dtn~~v~~~~L~~l 1235 (1610)
-..++.+.-|..-+=+.|+..|-+.||+.|.+|.=.+.....+...+.+.+| .-+++=|+..|.-+++++++.+||.|
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l 431 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGL 431 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHH
Confidence 2233444446666667999999999999999999999999888776655544 34677777788778999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCC
Q 000369 1236 PELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1610)
Q Consensus 1236 ~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd 1267 (1610)
..++..-..... +. . .-+..+++..|-
T Consensus 432 ~nil~~~e~~~~-~~---~-n~~~~~IEe~gg 458 (514)
T KOG0166|consen 432 ENILKVGEAEKN-RG---T-NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHhcc-cc---c-cHHHHHHHHccC
Confidence 988876554321 10 0 455666777765
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=1.1 Score=59.15 Aligned_cols=595 Identities=14% Similarity=0.098 Sum_probs=295.3
Q ss_pred HHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHHHHhc---CCC
Q 000369 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAG---CLN 400 (1610)
Q Consensus 325 ~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~-~V~~aa~~al~ai~~~~---~~~ 400 (1610)
.++..|-..+.|....|+..|++-++.++..+.. ..+..++..+++.|..-.. ..---+.-++.-+...+ ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 4555666777899999999999999999998874 3566777777776654442 12222222333333221 234
Q ss_pred hHhhHHHHHHHhh--------cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHH-HHhhcCCChHHHHHHHHHHHH
Q 000369 401 LVDVVEDVKTSVK--------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 401 l~~vl~~l~~~l~--------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~~~l~D~~~~VR~aA~~al~~ 471 (1610)
+++|+|-|..++. ...-.||-.++=++-.+.....+..+.+++..+.+.+ ..++-|+.-.+|.+|..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 5678888877763 2235788887766666666666666766666666665 578999999999999998876
Q ss_pred HHHHhCChhH-HHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCC
Q 000369 472 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550 (1610)
Q Consensus 472 l~~~~g~~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 550 (1610)
..-..|+-+. .+++...|-..-.....+...
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~------------------------------------------------ 529 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLD------------------------------------------------ 529 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHH------------------------------------------------
Confidence 6655555321 122222221100000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000369 551 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 630 (1610)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~ 630 (1610)
+ ..+-++.+.-...+|.+-+...+.|=+-+.|..|...|.+...
T Consensus 530 ---------------------------------l---~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 530 ---------------------------------L---CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred ---------------------------------H---hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 0 0011222222223344444455777788889999998887543
Q ss_pred hccccchhHHHHHHHhhc----CCCCCccHHHHHHHHHHHHHHHHHHcCCCchh---hHHHHHHHHHhhhccchhhHHHH
Q 000369 631 AVQNLDQSVEILVRLVCM----LPGWSEKNVQVQQQVIEVINYLAATATKFPKK---CVVLCLLGISERVADIKTRAHAM 703 (1610)
Q Consensus 631 ~~~~~~~~~~~lv~~l~~----~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~---~~~~il~~LveKlgd~K~r~~a~ 703 (1610)
-..+. .....+.+++.. .+.+...-+.+.......+..+......+... +...+++.+.++-.....++.-.
T Consensus 574 ~~pk~-~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr 652 (1133)
T KOG1943|consen 574 TEPKY-LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMR 652 (1133)
T ss_pred hhHHh-hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHH
Confidence 31110 001223333321 11111222222222222221111001111111 12224555555544443333444
Q ss_pred HHHHHHHhhhC-------hhhHHHHH---HhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhcCCCCCc
Q 000369 704 KCLTTFSEAVG-------PGFIFERL---YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA 772 (1610)
Q Consensus 704 ~~L~~l~e~~~-------~~~v~~~l---~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l-~~k~li~~l~~~gl~~~n 772 (1610)
.+...+.|.++ ++++.+.. +.....+.| .+|.++...+++++..|-...- ...++|......+-..++
T Consensus 653 ~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~ 731 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSE 731 (1133)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchH
Confidence 44555555433 23443322 222223445 6788888888888887643211 111454443332144446
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCcccccc
Q 000369 773 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1610)
Q Consensus 773 ~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~ 852 (1610)
..+|..-+-.++.+-..+ +... .++-+ .+.
T Consensus 732 ~~~r~g~~lal~~lp~~~---i~~~-------~q~~l----c~~------------------------------------ 761 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSEL---IHRH-------LQEKL----CKL------------------------------------ 761 (1133)
T ss_pred HHHHHHHHHHHccCcHHh---hchH-------HHHHH----HHH------------------------------------
Confidence 777776665554443111 1110 01111 010
Q ss_pred ccchHHHhh-cCCCChhH-HHHHHHHHHHHHHHccccCCCCChhhHHHHHH----hccc----cccHhHHHHHHHHHHHH
Q 000369 853 KFTPTLVKS-LESPDWKV-RLESIEAVNKILEEANKRIQPAGTGELFGGLR----GRLY----DSNKNLVMATLITLGAV 922 (1610)
Q Consensus 853 ~l~~~ll~~-l~d~~Wk~-R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~----~~L~----Dsn~~v~~~al~~l~~l 922 (1610)
++.. .+|. |.+ |...+..+..++........+..+.+++..|. +... |-..-|+.+|++.+..+
T Consensus 762 -----~l~~~p~d~-~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~ 835 (1133)
T KOG1943|consen 762 -----VLELLPSDA-WAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSL 835 (1133)
T ss_pred -----HhccCcccc-cHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhh
Confidence 0000 0112 333 66666666666553222223333444444444 4443 44566888999998888
Q ss_pred HHHhC-h-hHHHh-hhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh--c--CcCChhhHHHHHH
Q 000369 923 ASAMG-P-AVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT--D--AKLGAEGRKDLFD 995 (1610)
Q Consensus 923 a~~lg-~-~~~~~-~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~--~--~~~~~~~R~~~l~ 995 (1610)
...+. + -++.+ +..++..+++-..|+-...|+.|..|+..+..+-..-..+|......+ . ...++..-...+.
T Consensus 836 ~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f 915 (1133)
T KOG1943|consen 836 LDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTLF 915 (1133)
T ss_pred hhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchhh
Confidence 76553 3 34543 455666688888888888899999999999877222223343222221 0 0000110111111
Q ss_pred HHHHHhccCCCCCch-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhh
Q 000369 996 WLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1610)
Q Consensus 996 ~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~ 1069 (1610)
-+...+... +.. .+.+..+...+..--...++.|.+++..+++ ++..+.+-.+..+..-...+.+.+-.
T Consensus 916 ~L~~~Ll~~---~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~ 985 (1133)
T KOG1943|consen 916 PLNSSLLEL---PRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLN 985 (1133)
T ss_pred hHHHHHHhh---HHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHH
Confidence 111111111 122 2233334444444445567777777777776 44444444555555555555554433
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=1.1 Score=59.05 Aligned_cols=500 Identities=17% Similarity=0.155 Sum_probs=258.5
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCh-HhhHHHHHHHhh----cCChHHHHHHHHHHHHHHHhCCh
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDVVEDVKTSVK----NKVPLVRSLTLNWVTFCIETSSK 436 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l-~~vl~~l~~~l~----~Knp~vR~~~l~~L~~~l~~~~~ 436 (1610)
-+++.++-.|+..+.|+...||=++.+.+.-+.......+ ++++..+++.+. +..|- +++.+|+.+... +-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r-Gl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR-GL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc-CC
Confidence 4677899999999999999999888888888877621111 234444444332 33343 666666654332 10
Q ss_pred hHHHHhhhhHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCC
Q 000369 437 AAVLKVHKDYVPICMECLN--------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVA 508 (1610)
Q Consensus 437 ~~l~~~l~~l~p~l~~~l~--------D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~ 508 (1610)
.+...+..++|.+.++|. -.-..||++|+-.+|+|.+......+.|++.+|-...
T Consensus 413 -Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L---------------- 475 (1133)
T KOG1943|consen 413 -LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL---------------- 475 (1133)
T ss_pred -cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH----------------
Confidence 112345788999998872 2335799999999999999887666666665443211
Q ss_pred CCCCCccccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCC
Q 000369 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSE 588 (1610)
Q Consensus 509 ~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 588 (1610)
T Consensus 476 -------------------------------------------------------------------------------- 475 (1133)
T KOG1943|consen 476 -------------------------------------------------------------------------------- 475 (1133)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhcccc--chhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 000369 589 MSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1610)
Q Consensus 589 ~s~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~--~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~ 666 (1610)
++..++|..-.-|-+|.-.+++.+.-.++. +...-..+.+++. .-.+.....
T Consensus 476 -----------------L~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV---------~~rsNcy~~ 529 (1133)
T KOG1943|consen 476 -----------------LIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV---------TNRSNCYLD 529 (1133)
T ss_pred -----------------HHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh---------hhhhhHHHH
Confidence 123344444444555555555444331111 1111112223221 123333333
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhh-hc--cchhhHHHHHHHHHHHhhh---ChhhHHHHHHhhhhcCCCHhHHHHHHH
Q 000369 667 INYLAATATKFPKKCVVLCLLGISER-VA--DIKTRAHAMKCLTTFSEAV---GPGFIFERLYKIMKDHKNPKVLSEGIL 740 (1610)
Q Consensus 667 l~~l~~~~~~~~~~~~~~il~~LveK-lg--d~K~r~~a~~~L~~l~e~~---~~~~v~~~l~~~l~~~knpKv~~~~l~ 740 (1610)
+...+..++.+. ..++..++.+ +- |.++|..+..+|..+.... ..++++..+++.. ..+++-.|.++..
T Consensus 530 l~~~ia~~~~y~----~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~-ls~~~~~r~g~~l 604 (1133)
T KOG1943|consen 530 LCVSIAEFSGYR----EPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST-LSKDASMRHGVFL 604 (1133)
T ss_pred HhHHHHhhhhHH----HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh-cCCChHHhhhhHH
Confidence 433333333333 3344555543 54 4678999988888877642 3345677777763 6788888998888
Q ss_pred HHHHHHHHhC-CCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChh-HHHhhhcccHHHHHHHHHHHhcCCC
Q 000369 741 WMVSAVEDFG-VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPF 818 (1610)
Q Consensus 741 ~l~~~i~~fg-~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~-l~~~l~~lkp~ll~~L~~ef~k~~~ 818 (1610)
..++++..+- .. +++..+... .-+-+..-+..+...|.+-|.+ +. .-...+.|+. +..
T Consensus 605 a~~ev~~~~~~l~-----~~~~~l~e~-----~i~~l~~ii~~~~~~~~~rg~~~lm------r~~~~~~Ie~----~s~ 664 (1133)
T KOG1943|consen 605 AAGEVIGALRKLE-----PVIKGLDEN-----RIAGLLSIIPPICDRYFYRGQGTLM------RQATLKFIEQ----LSL 664 (1133)
T ss_pred HHHHHHHHhhhhh-----hhhhhhHHH-----HhhhhhhhccHHHHHHhccchHHHH------HHHHHHHHHH----hhh
Confidence 8888875432 11 111100000 0000000111222222222321 10 0111122221 111
Q ss_pred CCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCC-hh-hH
Q 000369 819 EGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TG-EL 896 (1610)
Q Consensus 819 ~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~-~~-eL 896 (1610)
... | ..+...+.. .-.-+.+.+.+.| ++|.++..++.+++.. ....+. .. ++
T Consensus 665 s~~----~-----------------~~~~~v~e~-~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~~~l 718 (1133)
T KOG1943|consen 665 SKD----R-----------------LFQDFVIEN-WQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEEAPL 718 (1133)
T ss_pred ccc----h-----------------hHHHHHHHH-HHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhhhHH
Confidence 000 0 000011110 0001112235667 8999999999999864 333332 12 24
Q ss_pred HHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHh-hhhHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcC-----
Q 000369 897 FGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCL-GDNKKHMRECTLTVLDAWLAAVH----- 968 (1610)
Q Consensus 897 ~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~-~~~llp~ll~~l-~D~k~~Vr~aa~~aL~~~~~~~~----- 968 (1610)
+.....++ +.++..++.--.-+++.+...+ +.-+ -+.+...++..+ .|--+.-|+....+++.+....+
T Consensus 719 i~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~ 795 (1133)
T KOG1943|consen 719 ITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFS 795 (1133)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444 4456666554333333332211 1111 222333344433 23356677777777777776654
Q ss_pred --chhhHHHHHHHHhc------CcCChhhHHHHHHHHHHHhccCCCCCc-hhhhHHHHHH----hcCCCCHHHHHHHHHH
Q 000369 969 --LDKMVPYVTTALTD------AKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASI----AMTDKSSDVRKAAEAC 1035 (1610)
Q Consensus 969 --l~~ll~~l~~~L~~------~~~~~~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~----~L~D~~~dVR~aA~~~ 1035 (1610)
..++.+.|..+|.+ +.+...+|..++..+...+.....++- ..+.+.+++. ---|+-...|.-|..|
T Consensus 796 ~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~ 875 (1133)
T KOG1943|consen 796 ESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASA 875 (1133)
T ss_pred ccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677777777763 223345788888888777666554221 1233444333 3356666668888777
Q ss_pred HHHHHHH
Q 000369 1036 IVEILRA 1042 (1610)
Q Consensus 1036 l~~l~~~ 1042 (1610)
+..+..+
T Consensus 876 ~~qi~~~ 882 (1133)
T KOG1943|consen 876 LNQIVVH 882 (1133)
T ss_pred Hhceeec
Confidence 7766655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=76.26 Aligned_cols=304 Identities=16% Similarity=0.219 Sum_probs=193.2
Q ss_pred HHHHHHhhc-CChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCch---
Q 000369 604 ADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK--- 679 (1610)
Q Consensus 604 ~~l~~~L~s-~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~--- 679 (1610)
.-+..++.+ +.-..|++|++-|...-.-.+.. ...+-++.++.. -|.|+-.+|+..++++|..+...-.++..
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE-VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 333444444 45667899999887664443222 234555556543 47999999999999999998765444332
Q ss_pred -hhHHHHHHHHHhhhccc---hhhHHHHHHHHHHHhhhChhhHHHHHHh--hhhcCCCHhHHHHHHHHHHHHHHHhCCCC
Q 000369 680 -KCVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYK--IMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1610)
Q Consensus 680 -~~~~~il~~LveKlgd~---K~r~~a~~~L~~l~e~~~~~~v~~~l~~--~l~~~knpKv~~~~l~~l~~~i~~fg~~~ 753 (1610)
-..+.++|.|-.-+.|+ .+|-.-..+|-.+++...-=..+.+.+. ++.+..|.. ...+.-+-..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~ 571 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSE----------TAPEQNYNTE 571 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccc----------cccccccchH
Confidence 23456777777666662 3565555666666542110000111111 111111111 0000000000
Q ss_pred C-Ch-HhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCc
Q 000369 754 L-KL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1610)
Q Consensus 754 l-~~-k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~ 831 (1610)
+ .+ ..+-+.+..+ +.++.+.||.+-.+-++.|+.+.|.. + +
T Consensus 572 ~~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k------------s- 614 (1431)
T KOG1240|consen 572 LQALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K------------S- 614 (1431)
T ss_pred HHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c------------c-
Confidence 0 01 1223445567 88888999999999999999888742 0 0
Q ss_pred cCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhh-HHHHHHhccccccHh
Q 000369 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKN 910 (1610)
Q Consensus 832 ~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~e-L~~~L~~~L~Dsn~~ 910 (1610)
+ |+ |.+-++.-|.|++|.-|..-.+.+-.+. -.+...-..| |++.|.+-|.|...-
T Consensus 615 ----------N------D~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 615 ----------N------DV---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEA 671 (1431)
T ss_pred ----------c------cc---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchh
Confidence 1 11 4566778899999999999888876553 2333332234 567778899999999
Q ss_pred HHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC----chhhHHHHHHHHh
Q 000369 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----LDKMVPYVTTALT 981 (1610)
Q Consensus 911 v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~----l~~ll~~l~~~L~ 981 (1610)
|+..||.++..|++. |--=++++..++..++-.|...+..||.++..-|-++.++.+ .-.+.|.|-+.|.
T Consensus 672 Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 672 VIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred hHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 999999999999874 322246788888888888999999999999999999998876 2336677776665
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=63.91 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000369 301 ERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1610)
Q Consensus 301 ~R~eal~~L~~l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk 379 (1610)
.|+.+|..|.+++ .-++-....+.+|++.+.+.+.|.+..|+..||+++..+++..+..+-+|...++..|.+.+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999998865 222223334578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000369 380 PTVAESLTQTLQAMH 394 (1610)
Q Consensus 380 ~~V~~aa~~al~ai~ 394 (1610)
+.|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999887 5555544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.059 Score=67.43 Aligned_cols=334 Identities=13% Similarity=0.223 Sum_probs=187.0
Q ss_pred HHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH-
Q 000369 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP- 974 (1610)
Q Consensus 896 L~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~- 974 (1610)
++.++++-|..+|--++-.+++.+..|=. ...++.++|.+..+|.....-||..|.-|+-+++.+. +.++|
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pD 171 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPD 171 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCC
Confidence 34566677788888888888877655422 1467789999999999999999999999999999873 22222
Q ss_pred ---HHHHHHhcCcCChhhH------------HHHHHHHHHHhccCCCCCchhhhHH-HHHHhcCCCCHHHHHHHHHHHHH
Q 000369 975 ---YVTTALTDAKLGAEGR------------KDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVE 1038 (1610)
Q Consensus 975 ---~l~~~L~~~~~~~~~R------------~~~l~~L~~~l~~~~~~~~~~~ll~-pl~~~L~D~~~dVR~aA~~~l~~ 1038 (1610)
.+...|.... .|.-+ ..++.||...+...+...+..+++. -++.-...+++.-|..=..|+-.
T Consensus 172 apeLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 172 APELIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred hHHHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 2333333211 22223 3456666666666654333333222 22222222555544444444433
Q ss_pred HHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCc
Q 000369 1039 ILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESI 1118 (1610)
Q Consensus 1039 l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1118 (1610)
+...-......+....|- + .+ ..|...
T Consensus 251 lL~stssaV~fEaa~tlv-------------------~--------------------------lS--------~~p~al 277 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLV-------------------T--------------------------LS--------NDPTAL 277 (948)
T ss_pred HHhcCCchhhhhhcceEE-------------------E--------------------------cc--------CCHHHH
Confidence 222211111111100000 0 00 000000
Q ss_pred cccchhhhhhccccc----cC-CCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhh---HHHHHhhccccHHHHHHH
Q 000369 1119 MSVQDFAVQSQALLN----VK-DSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR---EDLHRRLLSTDFKKQVDG 1190 (1610)
Q Consensus 1119 ~~~~~~~~~~~~~~~----~~-~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~---~~l~~~l~s~d~~~r~~~ 1190 (1610)
+ ...+..+. .. +|-| +.+ .|-+.+|++-...++. -+++..|-+.|+.-|-++
T Consensus 278 --k----~Aa~~~i~l~~kesdnnvk-----lIv---------ldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Kt 337 (948)
T KOG1058|consen 278 --K----AAASTYIDLLVKESDNNVK-----LIV---------LDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKT 337 (948)
T ss_pred --H----HHHHHHHHHHHhccCcchh-----hhh---------HHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 0 00000000 00 1111 110 0111122221222211 277788889999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCCHHHHHhhhHHHHHhhCCChH
Q 000369 1191 LEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1270 (1610)
Q Consensus 1191 l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~~~ea~~~lp~l~~K~Gd~k~ 1270 (1610)
++...+...+. |..-+..++..++.+||..=.-+.-.|=+.|+..+......|.++ |+..+|.|++=+||..+
T Consensus 338 ldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 338 LDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFISDSNE 410 (948)
T ss_pred HHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHhccCCH
Confidence 99988876653 333355677778888876655556666666676666666678876 88899999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCcc--ccHHHHHhcc-cCCchhhHHHHHHHHHHH
Q 000369 1271 KVREKMRELTKQIVNFYSAT--KTLPYILEGL-RSKNNRTRIECVDLVGFL 1318 (1610)
Q Consensus 1271 ~vr~~v~~il~~~~~~~~~~--kv~~~l~~gl-~sKn~r~r~e~l~~l~~l 1318 (1610)
..-..|-..++.+.+.||.- .+..-+++++ +-+.+|.....+=-+|..
T Consensus 411 ~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 411 AAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEY 461 (948)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 88888888888877777754 3555556655 445555554444444443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.3 Score=62.23 Aligned_cols=145 Identities=16% Similarity=0.245 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCc
Q 000369 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK 949 (1610)
Q Consensus 870 R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k 949 (1610)
..+-++.+-.++... +..++..-|+..-.+-+...+..++++|+.++...... ..++..++..+.-+.
T Consensus 332 K~eKleil~~la~~~-------nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~ 399 (734)
T KOG1061|consen 332 KLEKLEILIELANDA-------NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKV 399 (734)
T ss_pred HHHHHHHHHHHhhHh-------HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcc
Confidence 344555555555432 14667777777777888888899999999988765433 567777788887777
Q ss_pred HHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHH
Q 000369 950 KHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (1610)
Q Consensus 950 ~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~d 1027 (1610)
..|.+.+...+..+.+.++ ++.+++.+...+.+=. +|+.|......+.++...++ +...++.-++....|...+
T Consensus 400 ~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~-epeak~amiWilg~y~~~i~---~a~elL~~f~en~~dE~~~ 475 (734)
T KOG1061|consen 400 DYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQ-EPEAKAALIWILGEYAERIE---NALELLESFLENFKDETAE 475 (734)
T ss_pred cceeeehhHHHHhhhhcCCCchhhhhhhhcccccccC-ChHHHHHHHHHHhhhhhccC---cHHHHHHHHHhhcccchHH
Confidence 7788888888888888876 4556665555444321 46666655544444433332 3344555555566665555
Q ss_pred HHH
Q 000369 1028 VRK 1030 (1610)
Q Consensus 1028 VR~ 1030 (1610)
|+-
T Consensus 476 Vql 478 (734)
T KOG1061|consen 476 VQL 478 (734)
T ss_pred HHH
Confidence 543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=65.45 Aligned_cols=302 Identities=17% Similarity=0.232 Sum_probs=169.3
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC--CCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCC-c-hh
Q 000369 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA--KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK-D-PV 204 (1610)
Q Consensus 129 v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~--~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~-~-~~ 204 (1610)
..+.|..|+.|.+|+|+.-++..|..+++.-+. ..+.-..+++.+..++.|.|..|.+.|.+++..+.++-.. + .+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 445666777888888888888777766654322 2223356777888888888888888888888777544322 1 11
Q ss_pred hHHHhhhChHHHHH--------HHHHHHHhcCCCCCCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCC
Q 000369 205 KTILFEKMRDTMKK--------ELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELV 276 (1610)
Q Consensus 205 ~~~l~~~lk~~q~k--------ele~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~ 276 (1610)
...+...|+....+ -++ .+.++.. .+... .+.+
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~e-l~v~i~~--------~S~~~------------------------------~~~~ 198 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYE-LLVEIAS--------HSPEA------------------------------AEAV 198 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHH-HHHHHHh--------cCHHH------------------------------HHHH
Confidence 11112333332222 111 1111100 00000 0000
Q ss_pred CcccccCcCccchhhhhhccCChHHHHHHHHHHHHHhcCCC----CCC-CChHHHHHHHHHHccCc--CHHHHHHHHHHH
Q 000369 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR----IAP-GDFTEVCRTLKKLITDV--NIAVAVEAIQAI 349 (1610)
Q Consensus 277 ~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~k----i~~-~~~~~l~~~L~~~l~D~--n~~v~~~A~~~i 349 (1610)
....++ +.+...+.+.|--.|..+++-|..++..+. +.. +-+..|+..+...-.|. +...+-..++..
T Consensus 199 ~~sgll-----~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 199 VNSGLL-----DLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HhccHH-----HHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 000111 123333455566667778888877764321 111 22334444444443454 454555566777
Q ss_pred HHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----------hHhhHHHHHHHhhcCChH
Q 000369 350 GNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----------LVDVVEDVKTSVKNKVPL 418 (1610)
Q Consensus 350 ~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~-----------l~~vl~~l~~~l~~Knp~ 418 (1610)
+.++..-...+-.....++..+++.+....+..+..|.+|+..+... ..+ +..++..+.....+....
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 77777533333333455666667767778888888888888877643 111 223344455555566678
Q ss_pred HHHHHHHHHHHHHHhCCh---hHHHHhh--------hhHHH-HHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 419 VRSLTLNWVTFCIETSSK---AAVLKVH--------KDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 419 vR~~~l~~L~~~l~~~~~---~~l~~~l--------~~l~p-~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
+|..+++.++.++..... ..+.... ..-.. .++..+.-+-|++|-+|...+.+++.+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 999999999999765432 1121111 11112 778889999999999999999988855
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.089 Score=65.00 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=128.0
Q ss_pred hhhhhhccCChHHHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~---~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~ 364 (1610)
....++.+.+=..+..+...++++.+..+-.+ .--..+++.|...+. +.+..+..+|.-++..+|.|-...-.-++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 34556677788889999999999875433332 111246677777776 88899999999999999998765544333
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh------hHHHHHHHhhcCCh-HHHHHHHHHHHHHHHhC-C
Q 000369 365 -RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIETS-S 435 (1610)
Q Consensus 365 -~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~------vl~~l~~~l~~Knp-~vR~~~l~~L~~~l~~~-~ 435 (1610)
...+|.++..+......|++.+.-||..+... +..+.+ +++.++..+....+ .....+...|..+.... +
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 36788899999999999999999999999876 344443 34556666665554 33334444444444443 3
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000369 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 436 ~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~ 476 (1610)
.+.+ ..+..++|+|..++.+.|++|.. .+.|++....
T Consensus 229 ~P~~-~~v~~iLp~L~~ll~~~D~~Vl~---Da~WAlsyLs 265 (514)
T KOG0166|consen 229 SPPF-DVVAPILPALLRLLHSTDEEVLT---DACWALSYLT 265 (514)
T ss_pred CCcH-HHHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHHh
Confidence 3332 45688999999999999999974 4455555443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=62.65 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCC
Q 000369 869 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 948 (1610)
Q Consensus 869 ~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~ 948 (1610)
.|+.|+-.|.++...-...+... +.+|++.+...+.|.+..|+-.||+++-.+++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48889999988876543343333 57899999999999999999999999999999999999899999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 000369 949 KKHMRECTLTVLDA 962 (1610)
Q Consensus 949 k~~Vr~aa~~aL~~ 962 (1610)
.+.||.+| +.|+.
T Consensus 81 d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 81 DENVRSAA-ELLDR 93 (97)
T ss_pred chhHHHHH-HHHHH
Confidence 99999998 44443
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.097 Score=64.78 Aligned_cols=274 Identities=14% Similarity=0.121 Sum_probs=144.7
Q ss_pred hhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHH
Q 000369 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 795 (1610)
Q Consensus 716 ~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 795 (1610)
+.++..+... .....++||..+++.|-.+-+ |++ +. +..-....++ +.|.+..||.+|++++...-........
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L~-~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-LS-KACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-cc-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3444444444 478899999999998877665 432 22 3455667788 9999999999999998766544421111
Q ss_pred HhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCC-------CChh
Q 000369 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-------PDWK 868 (1610)
Q Consensus 796 ~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d-------~~Wk 868 (1610)
..-+ -.+..++.|.++-..-. .-.=.+|..... .+ ....++.++++.+.-| .-|+
T Consensus 271 ~e~~-----e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 271 RESE-----EEKLKDAAFSSVCRAVR-DRSLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred chhh-----hhhhHHHHHHHHHHHHh-cCceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhh
Confidence 1111 12344555554421000 000011111100 00 0011122233322111 1233
Q ss_pred HHHHHHHHHHHHHH-HccccCC---CC---C-------hhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 869 VRLESIEAVNKILE-EANKRIQ---PA---G-------TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 869 ~R~eale~l~~ll~-~a~~~i~---~~---~-------~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
.-.+.-..+..--+ ..+++.. |+ + -+-.+.+|..-|.|---.|+..|...+..|+.. .++ |+
T Consensus 333 ~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~---FA 408 (823)
T KOG2259|consen 333 TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPG---FA 408 (823)
T ss_pred hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCC---cH
Confidence 32222222211000 0001110 00 0 011345666667777777888887777777654 233 34
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch-hhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhh
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1013 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~-~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~l 1013 (1610)
..-+--+...++|.-..||--|+.+|..+..+..+. .-++.+.+.|.+. ++++|.++.+.|.. .+..+...+.-.
T Consensus 409 ~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~--~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 409 VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKN--ARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHh--cCCCcHHHHHHH
Confidence 445555667778888888888888888888887653 4677888888876 57788887777753 233322233334
Q ss_pred HHHHHHhc
Q 000369 1014 LKPASIAM 1021 (1610)
Q Consensus 1014 l~pl~~~L 1021 (1610)
+..++++|
T Consensus 485 v~~lL~~L 492 (823)
T KOG2259|consen 485 VAHLLKNL 492 (823)
T ss_pred HHHHHHHh
Confidence 44466665
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.35 Score=60.40 Aligned_cols=191 Identities=18% Similarity=0.232 Sum_probs=137.2
Q ss_pred HHHhh-cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 857 ~ll~~-l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
.++.. ....++-.|..+++.+..+++ +......+.+++..+...+ .......+..+++++..+++++=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvN---K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVN---KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 34433 344569999999998888874 4333333567777777666 556677788999999999998744445778
Q ss_pred hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCcCChhhHHHHHH
Q 000369 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~--------~-----------l~~ll~~l~~~L~~~~~~~~~R~~~l~ 995 (1610)
..++..+++.++| +.+...+..++..++.-. + ...++|.+.+..++. +...|...+.
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ 345 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHH
Confidence 8899999999999 667888888888887541 1 233455666666543 3346778888
Q ss_pred HHHHHhccCCCC---CchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcC
Q 000369 996 WLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 996 ~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1610)
.|..++.+.|.. +++..+++-++.+|.=.+.+||.++-.++..+...- .+.+.++++.|
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 888888888762 455555555889998888999999999999888766 56777776554
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.059 Score=67.25 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=148.9
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHc-cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000369 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~~ki~~~-~~~~l~~~L~~~l-~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll 372 (1610)
...++-.|..+++.+..+++ |...+ .+.+++..+...+ ..........++..+.-+++||=-+-++....++..++
T Consensus 200 ~~~~~~~~~~~~~~la~LvN--K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVN--KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45668999999998888875 34333 4677777777777 45666678888999999999986555789999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-----CCC-----------hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC
Q 000369 373 EKLKEKKPTVAESLTQTLQAMHKA-G-----CLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1610)
Q Consensus 373 ~klkdkk~~V~~aa~~al~ai~~~-~-----~~~-----------l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1610)
+.+.+ +.+...+..++..++.- . +.+ +..++|.+.++.+..+...|...+..|..++.+.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 55677777888877754 0 011 34567778888887777799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccH
Q 000369 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1610)
Q Consensus 436 ~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~ 490 (1610)
+..+...++.++|.+.++|+=++++||.++.+++..+..-- ...+.++++.|-+
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 99888999999999999999999999999999998877665 3345555555443
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.027 Score=61.51 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHh
Q 000369 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945 (1610)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l 945 (1610)
++.+|..++..+..++... |+......+.+..+|.|.+..|+.+|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999998642 333455677888999999999999999999998764 34444456678889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------cCChhhHHHHHHHHHHHhcc
Q 000369 946 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1003 (1610)
Q Consensus 946 ~D~k~~Vr~aa~~aL~~~~~~~~---l~~ll~~l~~~L~~~-------~~~~~~R~~~l~~L~~~l~~ 1003 (1610)
.|.++.||..|..++..+...-+ +...++.+...|.+. ..+.+.|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 344566666666531 22456678888888877764
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.11 Score=65.85 Aligned_cols=365 Identities=20% Similarity=0.217 Sum_probs=207.1
Q ss_pred hhcCCChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhhhh
Q 000369 10 EAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1610)
Q Consensus 10 ~~~~lpl~erl~~k~WK~R~~ayeel~~~~~~~~~~~~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~ 89 (1610)
+|---|+-.-+.|++=-.|..+---+.+++.-..+ --+-.-+.+.++..+.|+|+.|-..++.+|....+.-...
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~--- 194 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV--- 194 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC---
Confidence 44445666667777777777777777776643211 0001224566677888999888888888887776654211
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHH----HHHHHHHHhhh--hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCC-C
Q 000369 90 YAKEVCDAIAAKCLTGRPKTVEKA----QAVFMLWVELE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-K 162 (1610)
Q Consensus 90 ~~~~v~~~lveK~l~~k~~~k~~a----~~~ll~~~e~~--~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~-~ 162 (1610)
....+.+.++.+.+.+....-+.+ .+++..|.--+ ..+.+++.+.+.+.|-|+-++.+++..+.+.+..+-. .
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~ 274 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN 274 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH
Confidence 111122223333332222333333 33333332111 1246777778888888888888888888777665433 0
Q ss_pred CcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCCCCcccchhhhh
Q 000369 163 IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD 242 (1610)
Q Consensus 163 ~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~~p~r~~rs~~~ 242 (1610)
..-.+.+-+.+..++.... .+ ---.+++++- ++...+.....++...|-
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e~-------qyvaLrNi~l------il~~~p~~~~~~~~~Ff~----------------- 323 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-EI-------QYVALRNINL------ILQKRPEILKVEIKVFFC----------------- 323 (734)
T ss_pred HHHHHHhcccceeeecccc-hh-------hHHHHhhHHH------HHHhChHHHHhHhHeeee-----------------
Confidence 0011222223333333111 10 0001111110 011111111111111110
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHHHHHHHHHHhcCCCCCCCC
Q 000369 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 322 (1610)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~ 322 (1610)
.+.||. | .+.+-++-+..+++. .+
T Consensus 324 -------------------------------kynDPi-----------Y---------vK~eKleil~~la~~-----~n 347 (734)
T KOG1061|consen 324 -------------------------------KYNDPI-----------Y---------VKLEKLEILIELAND-----AN 347 (734)
T ss_pred -------------------------------ecCCch-----------h---------hHHHHHHHHHHHhhH-----hH
Confidence 111211 1 112334545555432 23
Q ss_pred hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChH
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV 402 (1610)
Q Consensus 323 ~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~ 402 (1610)
..++...|+..-.+..+..++.|++|||.+|...... ..++..+|+.+.-+...|++.+...+..++.+..-..+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 5568888888888999999999999999999887754 56899999999989889999999999999988223346
Q ss_pred hhHHHHHHHhhc-CChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000369 403 DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1610)
Q Consensus 403 ~vl~~l~~~l~~-Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~ 480 (1610)
.++..+...+.+ .+|..|......+....+..+.+ ..++..+.+...|...+| ..+.+.+.+++|+.+.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a------~elL~~f~en~~dE~~~V---ql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENA------LELLESFLENFKDETAEV---QLELLTAAIKLFLKKP 492 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH------HHHHHHHHhhcccchHHH---HHHHHHHHHHHHhcCC
Confidence 677777666653 56888866554555544443322 566777888888888877 5777778888877543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.069 Score=70.09 Aligned_cols=274 Identities=15% Similarity=0.082 Sum_probs=177.2
Q ss_pred hhHHHHHHHHHHHhhhChhhHHHHHHhhh---hcCCCHhHHHHHHHHHHHHHHHh---CCC--CCChHhHHHHHHhcCCC
Q 000369 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVS--HLKLKDLIDFCKDTGLQ 769 (1610)
Q Consensus 698 ~r~~a~~~L~~l~e~~~~~~v~~~l~~~l---~~~knpKv~~~~l~~l~~~i~~f---g~~--~l~~k~li~~l~~~gl~ 769 (1610)
.|-.|.+.|..++...+-+..+++++++. +....++||..++..|++++... ... .+-...+++.+..+ +.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l-~~ 517 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL-LN 517 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh-hc
Confidence 46678888888888777776677777653 46788999999999999998632 221 12245577777777 77
Q ss_pred C-CcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCC---CCCCCCCccccCccCcCCCCCCCCCCC
Q 000369 770 S-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTVRASESTSSVSSGGSDGL 845 (1610)
Q Consensus 770 ~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~---~~~~~p~r~~r~~~~~~~~~~~~~d~~ 845 (1610)
| ++..||-+-..++..|.... ..|++ .-++.... ..|-..+.+ .+ . .+ .
T Consensus 518 d~~~~~vRiayAsnla~LA~tA----~rFle-----------~~q~~~~~g~~n~~nset~~--~~------~--~~--~ 570 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTA----YRFLE-----------LTQELRQAGMLNDPNSETAP--EQ------N--YN--T 570 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHH----HHHHH-----------HHHHHHhcccccCccccccc--cc------c--cc--h
Confidence 7 67789999999888876432 12221 11111000 000000000 00 0 00 0
Q ss_pred CccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHH
Q 000369 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1610)
Q Consensus 846 pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~ 925 (1610)
...++...+..-+...+.|..--+|..-++.|..++.=. .+.+.++ =|+.-|..-|+|....++..=...|..++--
T Consensus 571 ~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~ksND--~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 571 ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEKSND--VILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhccccc--chHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 011111111122334567888888888888888877532 3344443 2566667778999988988777777777666
Q ss_pred hChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcCcCChhhHHHHHHHHHHH
Q 000369 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1610)
Q Consensus 926 lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~ 1000 (1610)
.|.. ..-+.++|-+.+.|.|..+.|...|..|+..+++.--+ -+++..+.+.|-++ |.-+|.+++.++...
T Consensus 648 VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 648 VGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAAI 723 (1431)
T ss_pred Eeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHHH
Confidence 6654 12345788899999999999999999999999986433 44555667777777 567899999999988
Q ss_pred hccCCC
Q 000369 1001 LTGLSG 1006 (1610)
Q Consensus 1001 l~~~~~ 1006 (1610)
...+..
T Consensus 724 ~~~ls~ 729 (1431)
T KOG1240|consen 724 ARQLSA 729 (1431)
T ss_pred Hhhhhh
Confidence 777654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0039 Score=53.74 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
|.+|..++..|.++.+. ....+..+++.++|.+..+|.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 78999999999884443 34456678899999999999999999999999999754
|
... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.42 Score=57.96 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=110.7
Q ss_pred CChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 865 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 865 ~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
..|..|..++..+..+- ..+.+..|...+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 34678888888776542 1556778888889998899999988887776543 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCC
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1024 (1610)
+.|....||.++..++..+ +..+-.+.+...+.+. ++..+.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 9999999999988877554 5566667788888765 4555555555543 112344556677888999
Q ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHh
Q 000369 1025 SSDVRKAAEACIVEILRAGGQETIEKNL 1052 (1610)
Q Consensus 1025 ~~dVR~aA~~~l~~l~~~~G~~~~~~~l 1052 (1610)
+..+|..+...+..+.............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~ 315 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLAL 315 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHh
Confidence 9999999998887776555444444333
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=54.87 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=68.9
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhH
Q 000369 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1610)
Q Consensus 368 lp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1610)
+|.|++.+ .++.+.||..+..++. . ..-..+++.+...+++++|.+|..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----E--LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----C--CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----H--cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889988 8999999987766666 2 45568899999999999999999999998854 1 1567
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHHH
Q 000369 447 VPICMECLNDG-TPEVRDAAFSVLA 470 (1610)
Q Consensus 447 ~p~l~~~l~D~-~~~VR~aA~~al~ 470 (1610)
++.+.+.+.|. +..||.+|..+|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 88898988664 5677999999885
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.074 Score=58.12 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-hHHHHHHHhhcCC
Q 000369 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 416 (1610)
Q Consensus 338 n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~-vl~~l~~~l~~Kn 416 (1610)
|+.|+..++.+++.|+.. |...++..+|.+...+.|+.+.||..+..++..++......+.. ++..++..+.+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 567888999999999875 45667778999999999999999999999999988764445554 4478888999999
Q ss_pred hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcC
Q 000369 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456 (1610)
Q Consensus 417 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D 456 (1610)
+.+|..+..++..+.....+..+. ..+|.++..+++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~----~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIY----NNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHH----HHHHHHHHHHhC
Confidence 999999999999988874444443 334444444444
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.26 Score=61.78 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=100.0
Q ss_pred chhhhhhc--cCChHHHHHHHHHHHHHhc-----CCCCCCCChHHHHHHHHHHccCc-CHHHHHHHHHHHHH--HHHHhh
Q 000369 288 SGFWEGVK--ATKWSERKDAVAELTKLAS-----TKRIAPGDFTEVCRTLKKLITDV-NIAVAVEAIQAIGN--LARGLR 357 (1610)
Q Consensus 288 ~~f~~~l~--s~kW~~R~eal~~L~~l~~-----~~ki~~~~~~~l~~~L~~~l~D~-n~~v~~~A~~~i~~--La~~L~ 357 (1610)
+.||+.+. +.||- |-.|.+|-. .||+- ..|+.-|...|... --.+..++++|+-. |..|+.
T Consensus 221 P~ffkllttSsNNWm-----LIKiiKLF~aLtplEPRLg----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 221 PLFYKLLVTSSNNWV-----LIKLLKLFAALTPLEPRLG----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred HHHHHHHhccCCCee-----hHHHHHHHhhccccCchhh----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 47888774 58895 344444321 23322 23444455555422 22344555554432 222333
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh---hHHHHHHHhhcCChHHHHHHHHHHHHHHHhC
Q 000369 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD---VVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1610)
Q Consensus 358 ~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~---vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~ 434 (1610)
.+ ...+..++.-|=.-+-|+-++..=-+.-|+..+.. +++.. .-+.|+.+|.+|.+.+|..++..|...+..
T Consensus 292 d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k---tHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk- 366 (877)
T KOG1059|consen 292 DH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK---THPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK- 366 (877)
T ss_pred Cc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh---hCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-
Confidence 33 34567777777777788888888777777777776 34443 446678899999999999999998877653
Q ss_pred ChhHHHHhhhhHHHHHHHhhcCCCh-HHHHHHHHHH
Q 000369 435 SKAAVLKVHKDYVPICMECLNDGTP-EVRDAAFSVL 469 (1610)
Q Consensus 435 ~~~~l~~~l~~l~p~l~~~l~D~~~-~VR~aA~~al 469 (1610)
+.+.+|+..|+..+.++++ .-|+.-..-+
T Consensus 367 ------kNl~eIVk~LM~~~~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 367 ------KNLMEIVKTLMKHVEKAEGTNYRDELLTRI 396 (877)
T ss_pred ------hhHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 2347788888888888877 5555443333
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=4.9 Score=51.74 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHHHHHHHhhhcchhhhhh-HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHH
Q 000369 348 AIGNLARGLRTHFSGSSRF-LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1610)
Q Consensus 348 ~i~~La~~L~~~f~~~~~~-llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~ 426 (1610)
=+|+||-.|-=+=..-+.. +...|-+-+...++.|+-.|..++..|+.- .-..++.|++..-++|.+|-+|.-++..
T Consensus 88 RiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~Lc 165 (866)
T KOG1062|consen 88 RIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAALC 165 (866)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHHH
Confidence 4567776654332233333 444444557788888888887788777643 3456889999999999999999999999
Q ss_pred HHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 427 L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
..+++.+.+. ....+++...+.|.|.+..|=-++...+-.+++.-.
T Consensus 166 a~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 166 AVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 9999887653 246788999999999999998888887777776644
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.022 Score=61.61 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHH-----------HHH-hccCcHHHHHHHHHHHHHHHHhc---------
Q 000369 340 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LEK-LKEKKPTVAESLTQTLQAMHKAG--------- 397 (1610)
Q Consensus 340 ~v~~~A~~~i~~La~~L-~~~f~~~~~~llp~L-----------l~k-lkdkk~~V~~aa~~al~ai~~~~--------- 397 (1610)
+|+..|+.|++.+++.. ++.|..|+..++|.- +.. ++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 36889999999999994 566889999998865 333 47999999999999999998751
Q ss_pred ----C---CC----hHhhHH----HHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHH-HhhhhHHHHHHHhhcCCChH
Q 000369 398 ----C---LN----LVDVVE----DVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 398 ----~---~~----l~~vl~----~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~~~l~D~~~~ 460 (1610)
. ++ +..++- .+..+++ ++++.+-.+.++.+..+++.++-..+. +++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11 222232 2455565 678889999999999999988765554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000369 461 VRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 461 VR~aA~~al~~l~~~~g 477 (1610)
||.++.-|++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876644
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.18 Score=62.58 Aligned_cols=308 Identities=15% Similarity=0.148 Sum_probs=178.8
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC--hh-
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KA- 437 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~-vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~--~~- 437 (1610)
.-.+.+...+...+.+.-..||.+|.+++.++... ..+.. +.......|.+.+-.||.++++.+...-..++ ..
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 33455555688888999999999999999998763 44444 44566778889999999999888776555552 11
Q ss_pred --HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000369 438 --AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1610)
Q Consensus 438 --~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~ 515 (1610)
.-.++.....-.+...+.|..-.||-.|.++||.|..+-.+ -+...||..-+..++. .+
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee----~i~QTLdKKlms~lRR--kr------------- 332 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE----IIQQTLDKKLMSRLRR--KR------------- 332 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH----HHHHHHHHHHhhhhhh--hh-------------
Confidence 11245667777888999999999999999999988766432 1234455322222211 00
Q ss_pred ccCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHH
Q 000369 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1610)
Q Consensus 516 ~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~~ 595 (1610)
. .+++|..--+ + +.=++|.. .. .|. +.|+.+
T Consensus 333 ~--------------------------ahkrpk~l~s---~-GewSsGk~------~~----adv---------psee~d 363 (823)
T KOG2259|consen 333 T--------------------------AHKRPKALYS---S-GEWSSGKE------WN----ADV---------PSEEDD 363 (823)
T ss_pred h--------------------------cccchHHHHh---c-CCcccCcc------cc----ccC---------chhhcc
Confidence 0 0011100000 0 00000000 00 000 112222
Q ss_pred HHHhccCc----HHHHHHhhcCChHHHHHHHHHHHHHHHhccc-cchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHH
Q 000369 596 SRLGSLIP----ADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1610)
Q Consensus 596 ~~~~~ll~----~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~-~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l 670 (1610)
+....+++ ..++.+|.|.-...|.+|+..+.....+... .....+.|+.+ |+|----|..+++..|..+
T Consensus 364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM------fNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM------FNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH------hccHHHHHHHHHHHHHHHH
Confidence 22223333 4567788888899999999999988766322 12234555555 5777778999999999988
Q ss_pred HHHcCCCchhhHHHHHHHHHhhhccchhhHHHHHHHHHH--HhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHH
Q 000369 671 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF--SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1610)
Q Consensus 671 ~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~~~L~~l--~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~ 748 (1610)
+.+ ..+.+..+..++..|.+..- .+|+...+.|... .........+..+++.+ .|=|+-+-+.+..+..+-+.
T Consensus 438 s~~-l~i~eeql~~il~~L~D~s~--dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L--~kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 438 SVH-LAIREEQLRQILESLEDRSV--DVREALRELLKNARVSDLECIDMCVAHLLKNL--GKYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHH-heecHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhCCCCcHHHHHHHHHHhcc
Confidence 876 45555555556555555433 3566665555431 11112223344444433 35566666666665555444
Q ss_pred hC
Q 000369 749 FG 750 (1610)
Q Consensus 749 fg 750 (1610)
++
T Consensus 513 H~ 514 (823)
T KOG2259|consen 513 HR 514 (823)
T ss_pred Ch
Confidence 44
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.38 E-value=7.6 Score=53.40 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=82.3
Q ss_pred cHhHHHHHHHHHHHHHH--------HhChhHHHhhhhHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHh-cCc---hh
Q 000369 908 NKNLVMATLITLGAVAS--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAA-VHL---DK 971 (1610)
Q Consensus 908 n~~v~~~al~~l~~la~--------~lg~~~~~~~~~llp~ll~~l----~D~k~~Vr~aa~~aL~~~~~~-~~l---~~ 971 (1610)
|.......+-++|.+++ .-|+.+.+....+.-.++.+| ++.+..+|..|..+|..++-. .++ ..
T Consensus 1185 ~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~ 1264 (1692)
T KOG1020|consen 1185 NFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSRE 1264 (1692)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHH
Confidence 44556677889999987 345666655555555655554 577899999999999888744 332 34
Q ss_pred hHHHHHHHHhcCcCChhh-HHHHHHHHHHHhccCC-----------C-----------------CCc-----hhhh-HHH
Q 000369 972 MVPYVTTALTDAKLGAEG-RKDLFDWLSKQLTGLS-----------G-----------------FPD-----AAHL-LKP 1016 (1610)
Q Consensus 972 ll~~l~~~L~~~~~~~~~-R~~~l~~L~~~l~~~~-----------~-----------------~~~-----~~~l-l~p 1016 (1610)
+...+...|.+.+ ++.. |..++.-+..++.... . ... +.++ +..
T Consensus 1265 v~nly~~ila~~n-~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ 1343 (1692)
T KOG1020|consen 1265 VLNLYDEILADDN-SDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDN 1343 (1692)
T ss_pred HHHHHHHHHhhhc-ccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 5566667776554 3333 7777666655543210 0 001 2222 233
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH
Q 000369 1017 ASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 1017 l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
++.++-|++..||..|.+.++.+..
T Consensus 1344 ILe~cl~~d~~~r~~aikvl~liL~ 1368 (1692)
T KOG1020|consen 1344 ILESCLDRDLQVRLVAIKVLKLILN 1368 (1692)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHH
Confidence 6667777888888888877765543
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.37 Score=61.37 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=87.3
Q ss_pred HHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-hHh
Q 000369 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVD 403 (1610)
Q Consensus 325 ~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~-l~~ 403 (1610)
-|.+.|++=++..|-.||-.|+.+++.|+.. -.++.+.|.+-+.++..++.||..|.-|+.-++.. ... .+-
T Consensus 107 LltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~ 179 (866)
T KOG1062|consen 107 LLTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEH 179 (866)
T ss_pred HHHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHH
Confidence 4556777777788888999999999988652 35778999999999999999999888888888876 222 233
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHh
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~ 453 (1610)
+++.....|.+|+.-|-..++.++..+.+..+.. + .+.+.+++.+++.
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~-l-~~fr~l~~~lV~i 227 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA-L-SYFRDLVPSLVKI 227 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH-H-HHHHHHHHHHHHH
Confidence 4455566788999999999999988887765432 2 2233444444443
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.099 Score=63.04 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=133.9
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHH
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 938 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~-~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ll 938 (1610)
....+..|+.|....--+.++... +.+.. ..+++++..+..+..|++..++..||.+++.++..+......|...++
T Consensus 224 ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 224 SSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred cccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 345667899999888888877742 33332 236899999999999999999999999999999998888999999988
Q ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCcCChhhHHHHHHHHHHHhccCCC--CC
Q 000369 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FP 1008 (1610)
Q Consensus 939 p~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~l~~ll~~-------l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~--~~ 1008 (1610)
-.++..|-| .+..|.=.+..||.-+.+......+-++ +.+.+.+. +++.|..++-.+..+..-.+. ..
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~ 379 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEE 379 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchh
Confidence 888776654 5678888888999888887764444332 22333333 577888766554432222221 12
Q ss_pred chhh----hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhh
Q 000369 1009 DAAH----LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1610)
Q Consensus 1009 ~~~~----ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~ 1053 (1610)
.+.+ -..|++-.|+|+++-|-.|.+..+....-.++-+....++.
T Consensus 380 ~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 380 FFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 2332 33467778899999998888887776666666565555554
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0055 Score=45.97 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 446 l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
++|.+.++++|++++||.+|..+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.031 Score=56.09 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=84.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC----hH-hhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHH
Q 000369 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1610)
Q Consensus 366 ~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~----l~-~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1610)
.+++.+++.+.+....++..+..++..+..+.... .. .+++.+...+.+.++.++..++..|.++....+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 37888999999999999999999999887641000 12 57788888999999999999999999987654322 22
Q ss_pred Hhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 441 ~~l-~~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
... ..+++.+.+++++.+.++|+.|..+|+.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222 348999999999999999999999998764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.5 Score=50.80 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcc--CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-
Q 000369 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL- 375 (1610)
Q Consensus 299 W~~R~eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~--D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl- 375 (1610)
|.-=..++..+..|++...+..+....+++.+.+-+. .--...+....+.+..|...-+.....+...++..+++.+
T Consensus 54 ~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~ 133 (262)
T PF14500_consen 54 HACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID 133 (262)
T ss_pred HhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc
Confidence 3333455666777665555555555556665554333 1222356666777777776655555556667888888877
Q ss_pred ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhh---------cCC---hHHHHHHHHHHHHHHHhCChhHHHHhh
Q 000369 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---------NKV---PLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1610)
Q Consensus 376 kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~---------~Kn---p~vR~~~l~~L~~~l~~~~~~~l~~~l 443 (1610)
+||-|.----+-..+..+... ..+....+++.+.+. .+| .-.|.+.-.-|..|+..++. +.
T Consensus 134 gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa 206 (262)
T PF14500_consen 134 GEKDPRNLLLSFKLLKVILQE--FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FA 206 (262)
T ss_pred cCCCHHHHHHHHHHHHHHHHh--cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hH
Confidence 777776666666666666665 455666776665441 222 23666777777788775422 23
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHH
Q 000369 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1610)
Q Consensus 444 ~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~ 493 (1610)
+..+|.+..-|..+.+.|+.-+.++|......+|.+.+.+++..+=..-|
T Consensus 207 ~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 207 PFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999998888888887754433
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.29 Score=58.27 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=114.4
Q ss_pred HHHHHHHHhccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccc---cchh----HHHHHHHhhcCCCCCccHHHHHHHH
Q 000369 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQS----VEILVRLVCMLPGWSEKNVQVQQQV 663 (1610)
Q Consensus 591 ~ee~~~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~---~~~~----~~~lv~~l~~~p~~~DsN~~V~~~~ 663 (1610)
.++++.++ .+.+..+.++.-+.|.+|++.+...+...-. .... .+.+.+.+.+ | .+ .-+..+
T Consensus 38 ~~~~e~~L-----~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk--g--~~--~E~~lA 106 (309)
T PF05004_consen 38 QEDLEDKL-----KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK--G--KS--EEQALA 106 (309)
T ss_pred hhHHHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc--C--CH--HHHHHH
Confidence 34555444 4678899999999999999999999866211 1111 2333444322 1 11 334556
Q ss_pred HHHHHHHHHHcC--CCchhhHHHHHHHHHhhhccc----hhhHHHHHHHHHHHhhhC--hhhHH--HHHHhhhh------
Q 000369 664 IEVINYLAATAT--KFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVG--PGFIF--ERLYKIMK------ 727 (1610)
Q Consensus 664 l~~l~~l~~~~~--~~~~~~~~~il~~LveKlgd~----K~r~~a~~~L~~l~e~~~--~~~v~--~~l~~~l~------ 727 (1610)
+.++..++-..+ .-....+..+.|.|..-+.|. +.|..+..+|-.++-..+ ++-+. -..+..++
T Consensus 107 ~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~ 186 (309)
T PF05004_consen 107 ARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILK 186 (309)
T ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcC
Confidence 666666665543 334556666777776666663 566676666665543322 22111 02222111
Q ss_pred c---------CCCHhHHHHHHHHHHHHHHHhCCCCCC--hHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhCh
Q 000369 728 D---------HKNPKVLSEGILWMVSAVEDFGVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1610)
Q Consensus 728 ~---------~knpKv~~~~l~~l~~~i~~fg~~~l~--~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (1610)
. ..++.+..++|..-+-++.......+. +...++.+..+ |++++.+||-+|-+.+.-||.....
T Consensus 187 ~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l-L~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 187 SDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSEL-LDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred cCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 1 124568888887776666544332121 34466777888 9999999999999999999987764
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.011 Score=59.33 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=82.4
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~-~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
+.+++.+.+.+|..|..++..+..+.... +....... .++++.|.+.|.|.|..++..++.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45777888899999999999999987531 11111111 26778888888999999999999999999876443333333
Q ss_pred h-hHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000369 935 K-GVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 935 ~-~llp~ll~~l~D~k~~Vr~aa~~aL~~~~ 964 (1610)
. .+++.+++.+.+.+..+++.+..++..+.
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 48999999999999999999998887764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.044 Score=52.01 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000369 938 LSDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1610)
Q Consensus 938 lp~ll~~l-~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1016 (1610)
+|.+++.+ .|..+.||..+..+|. ..+-..++|.+...++++ ++.+|..++..|..+ .....+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i--------~~~~~~~~ 66 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDE--DPMVRRAAARALGRI--------GDPEAIPA 66 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCC--------HHHHTHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHh--------CCHHHHHH
Confidence 57888888 8999999999888887 445567899999999876 799999999988743 12445566
Q ss_pred HHHhcCC-CCHHHHHHHHHHHH
Q 000369 1017 ASIAMTD-KSSDVRKAAEACIV 1037 (1610)
Q Consensus 1017 l~~~L~D-~~~dVR~aA~~~l~ 1037 (1610)
+...+.| .+..||.+|..+|+
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 7777754 56678999988874
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.11 Score=61.72 Aligned_cols=408 Identities=17% Similarity=0.150 Sum_probs=190.8
Q ss_pred hhcCCchhHHHHHHHHHHHHhhccCCCC-----------chhhhhhhhhhHhhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000369 19 RLLHKNWKVRNEANIDLAALCDSITDPK-----------DNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1610)
Q Consensus 19 rl~~k~WK~R~~ayeel~~~~~~~~~~~-----------~~~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~ 87 (1610)
+..|-.-|.|..|.--+..+.+.++... .|+.. -..++.-.++|.|+...--+|+.+.+++..... |
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-f 81 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-F 81 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-H
Confidence 4556677899999988888776543211 11110 012333468999999999999999988876543 2
Q ss_pred hhhhHHHHHHHHhhhcC-C-ChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcC
Q 000369 88 GRYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1610)
Q Consensus 88 ~~~~~~v~~~lveK~l~-~-k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~ 165 (1610)
-....+.-+.-..- |. . -..++ .+-.|++...|.| -.|-++..|+.+|..++.+--...+.
T Consensus 82 ls~a~~~~~~~ftp-f~v~~a~si~-~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 82 LSVAEDTSDHAFTP-FSVMIACSIR-ELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHHHhccCCcCCCc-hHHHHHHHHH-HHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 11100000000000 00 0 00011 1233444444433 34566777888887777653222222
Q ss_pred ---hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC-------CCCcc
Q 000369 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-------ARPTR 235 (1610)
Q Consensus 166 ---~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~-------~~p~r 235 (1610)
+-.+.-++.++..|.|++||-.+..++..|. |-. +-++++|. . +..-... ..|..
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~-------~~~pei~~-~----~~~~~s~~n~~~~h~s~~~ 209 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STH-------APLPEVQL-L----LQQPCSSSNSATPHLSPPD 209 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcC-------CCCHHHHH-H----hcCCCccccccCCCCCChH
Confidence 2346667889999999999999887766553 211 11222221 1 1110000 01110
Q ss_pred cchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhh------hhcc--CChHHHHHHHH
Q 000369 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKA--TKWSERKDAVA 307 (1610)
Q Consensus 236 ~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~------~l~s--~kW~~R~eal~ 307 (1610)
. -+. .. .|+...+-..+.+...-.+--++.++--..-+++.+-+. .+++ ..---|.|+++
T Consensus 210 ~---~~~--l~-------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~q 277 (728)
T KOG4535|consen 210 W---WKK--LP-------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQ 277 (728)
T ss_pred H---HHh--cC-------CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHH
Confidence 0 000 00 000000000000001111222222222112222222111 1111 22346888888
Q ss_pred HHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchh--hhhhHHHHHHHHh----------
Q 000369 308 ELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLEKL---------- 375 (1610)
Q Consensus 308 ~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~--~~~~llp~Ll~kl---------- 375 (1610)
-|..++..-.+....+.++.+.+.+.+.|.-..+-..+..|+..+..++.....| .-..+.-..+..+
T Consensus 278 vl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~ 357 (728)
T KOG4535|consen 278 VLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL 357 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhh
Confidence 8876653222222345677788888888999999999999999999988744322 1111111111111
Q ss_pred ccC-cHHHHHHHHHHHHHHHHhcCCChHh----hHHHHHHHhh-cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHH
Q 000369 376 KEK-KPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449 (1610)
Q Consensus 376 kdk-k~~V~~aa~~al~ai~~~~~~~l~~----vl~~l~~~l~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 449 (1610)
-|+ -.....++..++-.|.......+++ ..+....++. |||--+|.+++..+.-.+-+..-.............
T Consensus 358 YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~ 437 (728)
T KOG4535|consen 358 YDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANA 437 (728)
T ss_pred hhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHH
Confidence 111 1112222222222222111111221 2223334443 777777777766665444433222111223444555
Q ss_pred HHHhhcCCChHHHHHHHHHHHHH
Q 000369 450 CMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 450 l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
+...+.|+.-.+|..++=+++.|
T Consensus 438 il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 438 ILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred HHHHhhhHhHhHHHHHHHHhhhh
Confidence 56666776666666665554433
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=7.9 Score=49.09 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=94.3
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHccCcCHHHHHHHHHHHHHHHH-HhhhcchhhhhhHH
Q 000369 291 WEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLL 368 (1610)
Q Consensus 291 ~~~l~s~kW~~R~eal~~L~~l~~~~ki~~~~~-~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~-~L~~~f~~~~~~ll 368 (1610)
.+.+++.|+.|+.=+.-.+.-|.+.. .++ ..+...+++=+...|...+..|++||+.+.. .++..|.+-+.
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~--- 152 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP--- 152 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH---
Confidence 34467888888776655555555421 233 2344566666667788889999999999876 34544543332
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChh
Q 000369 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 369 p~Ll~klkdkk~~V~~aa~~al~ai~~~~--~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
-|| .-++....|++.+.-|+..+++.+ ........+.|..-|.+..-.|-..+..++..++.++++.
T Consensus 153 -KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 153 -KLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred -HHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 222 247888999999999999999872 1334566777888888777777777888888777776654
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.047 Score=58.71 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=97.9
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHH---HHHhChh
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 929 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~l---a~~lg~~ 929 (1610)
+.+-|++++.+.+.--|.-|.+.+.+++.. +..+|.|- ..+|+..|+.-|+-.|..|...+|++++.| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 346788999888888888899999998886 55667776 488999999999999999999999999999 6678999
Q ss_pred HHHhhhhHHHHHH--HH----hC-----CCcHHHHHHHHHHHHHHHHhcCchhhH
Q 000369 930 VEKSSKGVLSDIL--KC----LG-----DNKKHMRECTLTVLDAWLAAVHLDKMV 973 (1610)
Q Consensus 930 ~~~~~~~llp~ll--~~----l~-----D~k~~Vr~aa~~aL~~~~~~~~l~~ll 973 (1610)
+.||.++++|.+- .. ++ ..++.+++-..++|..+-++.|.+.++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 9999999999876 21 22 255778899999999888888866543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.33 Score=58.76 Aligned_cols=210 Identities=16% Similarity=0.139 Sum_probs=138.0
Q ss_pred hhhhhccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000369 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1610)
Q Consensus 290 f~~~l~s~kW~~R~eal~~L~~l~~~~ki~~-~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ll 368 (1610)
|....++.+|+.|...+-.+.++...+.+.. +.+++++-.+.....|++..++..||.+++.++.++-.+.-.|...++
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~l 301 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQL 301 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHH
Confidence 3344678999999988888888776555543 667889999999999999999999999999999997777777777777
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHHHHHHHh-cCCChHhh----HHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhH---H
Q 000369 369 PVLLEKLKE-KKPTVAESLTQTLQAMHKA-GCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA---V 439 (1610)
Q Consensus 369 p~Ll~klkd-kk~~V~~aa~~al~ai~~~-~~~~l~~v----l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~---l 439 (1610)
-.++-.+-| -+..|.=.+..||.-+... ....+... .-.+-..+++-++++|..+...++.+....+... +
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 777777755 3456665566666666544 11222222 2223455678899999999888887776554322 2
Q ss_pred HH-hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHH
Q 000369 440 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1610)
Q Consensus 440 ~~-~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~ 500 (1610)
.. ..+.+.| +.-.++|++|.|-.|.+..+-...--++-+....+++..-+..+..+.+++
T Consensus 382 te~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 382 TEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred HHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 11 1122222 333579999999777766665555444434455555533233333444443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.8 Score=53.08 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=151.4
Q ss_pred HHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHH
Q 000369 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVT 977 (1610)
Q Consensus 900 L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~ 977 (1610)
++.-++.+|.-=+..|+..+..+.+ + ..++.+.+.++..|+.+++.||.-|...+-.++-..+ +...+|-+.
T Consensus 114 ~rkdl~S~n~ye~giAL~GLS~fvT---p---dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~ 187 (877)
T KOG1059|consen 114 LRKDLNSSNVYEVGLALSGLSCIVT---P---DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLV 187 (877)
T ss_pred HHHHhccCccchhhheecccccccC---c---hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHH
Confidence 3444555554444555555554433 1 3567888999999999999999999999988887776 677889999
Q ss_pred HHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhChHHHHHHhhcC
Q 000369 978 TALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 978 ~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~--~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L 1055 (1610)
+-|.++ +|.+...+.+-+.++..+.|. .+.++.+-+++.|.+. |+ .|-.+++.||. +.-+
T Consensus 188 EkLeDp--Dp~V~SAAV~VICELArKnPk--nyL~LAP~ffkllttSsNNW--------mLIKiiKLF~a------Ltpl 249 (877)
T KOG1059|consen 188 EKLEDP--DPSVVSAAVSVICELARKNPQ--NYLQLAPLFYKLLVTSSNNW--------VLIKLLKLFAA------LTPL 249 (877)
T ss_pred HhccCC--CchHHHHHHHHHHHHHhhCCc--ccccccHHHHHHHhccCCCe--------ehHHHHHHHhh------cccc
Confidence 999987 688888888888887655543 4566666688877443 44 23334444442 2222
Q ss_pred ChhHHHHHH----HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhccc
Q 000369 1056 QGPALALIL----ERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL 1131 (1610)
Q Consensus 1056 ~~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (1610)
.|--.+++. +.++..-.. +-+
T Consensus 250 EPRLgKKLieplt~li~sT~Am-------------------------------------------------------SLl 274 (877)
T KOG1059|consen 250 EPRLGKKLIEPITELMESTVAM-------------------------------------------------------SLL 274 (877)
T ss_pred CchhhhhhhhHHHHHHHhhHHH-------------------------------------------------------HHH
Confidence 222222221 111110000 000
Q ss_pred cccCCCChHHHhhhhhccccccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 000369 1132 LNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDI 1211 (1610)
Q Consensus 1132 ~~~~~~~k~~R~~~~~~k~~~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDl 1211 (1610)
+--.+ -+...+...--+++-...+. |+ .-|...+-++|-.-+.=|+-.|.+.+..++..+.++-|+
T Consensus 275 YECvN---------TVVa~s~s~g~~d~~asiqL----Cv-qKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdl 340 (877)
T KOG1059|consen 275 YECVN---------TVVAVSMSSGMSDHSASIQL----CV-QKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDL 340 (877)
T ss_pred HHHHH---------HheeehhccCCCCcHHHHHH----HH-HHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHH
Confidence 00000 00000000000011111111 22 255566667888888999999999999999999999999
Q ss_pred HHHHHHHhccCCcHHHHHHHHhHHHHHHHH
Q 000369 1212 LLRWFVLQFCKSNTTCLLKVLEFLPELFDT 1241 (1610)
Q Consensus 1212 llk~~~~r~~dtn~~v~~~~L~~l~~l~~~ 1241 (1610)
|+|.+ .|+.+++=.++||.|-.++..
T Consensus 341 IlrcL----~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 341 ILRCL----DDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHh----ccCCchhHHHHHHHHHHHhhh
Confidence 99988 899999999999998876643
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=5.1 Score=48.45 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=104.3
Q ss_pred HhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhH-HHhhhcccHHHHHHHHH-HHhcCCCCCCCCCCccccCccCc
Q 000369 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI-KGFLADVKPALLSALDA-EYEKNPFEGTVVPKKTVRASEST 834 (1610)
Q Consensus 757 k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l-~~~l~~lkp~ll~~L~~-ef~k~~~~~~~~p~r~~r~~~~~ 834 (1610)
...+.|+..+ -+|.|.-||.+|+..++.+-.+-|... ..|..+--..++..|.+ .|.+-... ..
T Consensus 390 T~~~~Fl~GC-~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Ka-------aw------ 455 (728)
T KOG4535|consen 390 TLCITFLLGC-NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKA-------AW------ 455 (728)
T ss_pred hhhHHHHhcc-cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHH-------HH------
Confidence 3456677764 677788999999998887766666432 23333322333333332 33221000 00
Q ss_pred CCCCCCC----CCCCCccc-----cccccchHHHh---hcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHh
Q 000369 835 SSVSSGG----SDGLPRED-----ISGKFTPTLVK---SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1610)
Q Consensus 835 ~~~~~~~----~d~~pr~d-----Is~~l~~~ll~---~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~ 902 (1610)
+.|.. -+.+|.+| +++.+...++. .....+.|+|..+++.|+.++.--.+-+.+. +++++..=+.
T Consensus 456 --tlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~-~~e~~~~~~~ 532 (728)
T KOG4535|consen 456 --SLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT-FAEIIEESIQ 532 (728)
T ss_pred --HhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc-HHHHHHHHHH
Confidence 00000 01222221 12211111111 1234478999999888887775322233333 5666654333
Q ss_pred c-----cccccHhHHHHHHHHHHHHHHHhChhH--HHhhhhHHHHHHHHhCCCcH-HHHHHHHHHHHHHHH
Q 000369 903 R-----LYDSNKNLVMATLITLGAVASAMGPAV--EKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLA 965 (1610)
Q Consensus 903 ~-----L~Dsn~~v~~~al~~l~~la~~lg~~~--~~~~~~llp~ll~~l~D~k~-~Vr~aa~~aL~~~~~ 965 (1610)
. ....|.+|+..+|.+++.+.+.-.-+| .+.+..+++.++..+.|-+. -||.-|..+|.....
T Consensus 533 ~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 533 ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 2 356789999999999999997533323 25677888888887766443 366666556544333
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=95.35 E-value=7.2 Score=47.97 Aligned_cols=313 Identities=17% Similarity=0.215 Sum_probs=184.1
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhccccc------hhHHHHHHHhhc----CCCCCcc-HHHHHHHHHHHHHHHHHHc---
Q 000369 609 QLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAATA--- 674 (1610)
Q Consensus 609 ~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~------~~~~~lv~~l~~----~p~~~Ds-N~~V~~~~l~~l~~l~~~~--- 674 (1610)
+|.+.+=-.|.+||..|...++..+... ...+.+++++.. .+.=+++ +..+..+++.++..+.-..
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 3556666789999999999887743221 123445555432 1222343 6678899999998887531
Q ss_pred CCCchhhHHHHHHHHHhhhccch-hhHHHHHHHHHHHh-hhChhhH----HHHHHhhh---hc-CCCHhHHHHHHHHHHH
Q 000369 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIM---KD-HKNPKVLSEGILWMVS 744 (1610)
Q Consensus 675 ~~~~~~~~~~il~~LveKlgd~K-~r~~a~~~L~~l~e-~~~~~~v----~~~l~~~l---~~-~knpKv~~~~l~~l~~ 744 (1610)
..++......++...++.+.++. .|..+...|.-+.+ .+++.++ ...++..+ .+ -++--+..|.+..+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 23555555567888888887764 35666666666554 5555432 33333322 22 3455678899999999
Q ss_pred HHHHhCCCC-CChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCC
Q 000369 745 AVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1610)
Q Consensus 745 ~i~~fg~~~-l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~ 823 (1610)
++..+...= -+...-++.+-.. +-++...+|..|+.+...+...+|+.- ...+.+.+.++....++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccccc---
Confidence 998876421 1223344455554 678899999999999988888888531 11122222222211000
Q ss_pred CCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCC-CChhHHHHHHHH---HHHHHHHccccCCC-CChhhHHH
Q 000369 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEA---VNKILEEANKRIQP-AGTGELFG 898 (1610)
Q Consensus 824 p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d-~~Wk~R~eale~---l~~ll~~a~~~i~~-~~~~eL~~ 898 (1610)
-+...+.+.+...+.+ ++.+ .+++- +-.++. . ..+.. ..+.+.+.
T Consensus 228 -------------------------~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~-~-~~~~~w~~~n~wL~ 277 (372)
T PF12231_consen 228 -------------------------KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG-S-SRLDSWEHLNEWLK 277 (372)
T ss_pred -------------------------cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC-C-chhhccHhHhHHHH
Confidence 0001112223333334 2222 12222 222231 1 22222 23578888
Q ss_pred HHHhccccccHhHHHHHHHHHHHHHHHhChh---HHHhhhhHHHHHHHHhCCC-----cHHHHHHHHHHHHHHH
Q 000369 899 GLRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDN-----KKHMRECTLTVLDAWL 964 (1610)
Q Consensus 899 ~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~---~~~~~~~llp~ll~~l~D~-----k~~Vr~aa~~aL~~~~ 964 (1610)
.....+++++..++.+|+.++..+.-.+..+ ..+.++.+..++...+.-. +..++.++..++..++
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 8888999999999999999999999877654 3466777888887766532 2267777776665544
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.022 Score=49.07 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000369 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~ 963 (1610)
.|+..|+.+|+.++...+..+.+|...++|.++..|.|.+..||.+|..||..+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478899999999888888889999999999999999999999999999888643
|
... |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.13 Score=67.81 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCcCCh
Q 000369 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGA 987 (1610)
Q Consensus 911 v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~---l~~ll~~l~~~L~~~~~~~ 987 (1610)
-....+.....++..||..+.+ +-..+|.++..+......+|.++..|+..+..... +..+++.+...+..-. +
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~-~- 868 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD-K- 868 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh-h-
Confidence 4456677888888889988888 78889999999999999999999999999998765 2334444444444211 1
Q ss_pred hhHHHHHHHHHHHhccCCC--CCchhh-hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHH-------HHHHhhcCCh
Q 000369 988 EGRKDLFDWLSKQLTGLSG--FPDAAH-LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQG 1057 (1610)
Q Consensus 988 ~~R~~~l~~L~~~l~~~~~--~~~~~~-ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~-------~~~~l~~L~~ 1057 (1610)
..|+.....+..++..... ...+.. +++|++.++.|....||.+|-+++..++..++.+. |.+.+-..+.
T Consensus 869 ~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke 948 (1549)
T KOG0392|consen 869 FVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKE 948 (1549)
T ss_pred HhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHH
Confidence 2333333333333333222 223344 45669999999999999999999999999888664 3333433444
Q ss_pred hHHHHHHHHHhhcC
Q 000369 1058 PALALILERIKLNG 1071 (1610)
Q Consensus 1058 ~~~~~i~~~l~~~~ 1071 (1610)
..++.|+..+++..
T Consensus 949 ~erkFLeqlldpsk 962 (1549)
T KOG0392|consen 949 EERKFLEQLLDPSK 962 (1549)
T ss_pred HHHHHHHHhcCccc
Confidence 45566666666543
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.5 Score=52.86 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCchhhhHH-HHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 986 ~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~-pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
|..+|.++...|+.+... .....+-+. -+..|++|++.+||..|...+..+-
T Consensus 479 n~ivRaaAv~alaKfg~~---~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQ---DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHhcC---CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 355888888888876522 122333343 4667999999999999999887765
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.1 Score=55.38 Aligned_cols=146 Identities=16% Similarity=0.044 Sum_probs=91.9
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
+.|+..+++.+...|..++..+... . .+-...|...|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r------~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAH------R------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhh------c------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 3567778888999998888555431 1 22344666677899999999999999887532
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHH
Q 000369 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1015 (1610)
Q Consensus 936 ~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1015 (1610)
..+|.+...+.|.++.||.+|..++..+ |-..-++.+....... .+-.+..+..++... + ....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHH
Confidence 3455566779999999999998888443 3344444444433322 222344444444321 1 124555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHH
Q 000369 1016 PASIAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 1016 pl~~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
.+...+.|.. ||..+..+++.+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHc
Confidence 5666677754 788777776643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.45 Score=57.72 Aligned_cols=175 Identities=21% Similarity=0.201 Sum_probs=116.2
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
+.+++.+.+.+|-.|..+...+..+- -.+.++.|...+.|.+..|+..|..+++.+. .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 45677788999999999988755432 2668899999999999999999988555442 23
Q ss_pred hHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcC----------ChhhHHHHHHHHHHHhccC
Q 000369 936 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL----------GAEGRKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 936 ~llp~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~----------~~~~R~~~l~~L~~~l~~~ 1004 (1610)
..++.++..+. |.+..||..+..+|..+-..-. +..+...+.+... ...+|..+..-+.. .
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~----~ 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----L 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH----c
Confidence 55677777776 8999999999999877654332 4445555654320 01234444444432 1
Q ss_pred CCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--ChHHHHHHhhcCChhHHHHH
Q 000369 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG--GQETIEKNLKDIQGPALALI 1063 (1610)
Q Consensus 1005 ~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~--G~~~~~~~l~~L~~~~~~~i 1063 (1610)
+ ....+.++...+.|...+||.+|..++..+.... ..+.+.+.+..-....+...
T Consensus 177 ~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 177 G----DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred C----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHH
Confidence 1 2344556778889999999999999998877653 22344444444444444333
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.037 Score=41.51 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 1014 LKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
++.+..+++|++++||.+|..|++.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44588999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.71 E-value=17 Score=46.79 Aligned_cols=357 Identities=13% Similarity=0.155 Sum_probs=187.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhccccchhHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000369 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1610)
Q Consensus 605 ~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~~~~lv~~l~~~p~~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~ 684 (1610)
++.+.|.+.+-+.+.+|+..+..++-++.+. .+++..++....-.++. -.++.|=..-
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~---p~Llm~IiRfvlps~~~---elKKLly~yw---------------- 81 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDL---PSLLMTIIRFVLPSRNH---ELKKLLYYYW---------------- 81 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCc---hHHHHHHhheeeccCch---HHHHHHHHHH----------------
Confidence 4567889999999999999988776554432 33333333211001111 1122111111
Q ss_pred HHHHHHhhh-ccchhhHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 000369 685 CLLGISERV-ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1610)
Q Consensus 685 il~~LveKl-gd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~~k~li~~l 763 (1610)
.++.|. +|.|+... +..+ .+.+-+- .+|.|--+|-.++.+|+++=+.- -+.++++.+
T Consensus 82 ---E~vPKt~~dgkl~~E----MILv---------cna~RkD-LQHPNEyiRG~TLRFLckLkE~E-----Llepl~p~I 139 (948)
T KOG1058|consen 82 ---ELVPKTDSDGKLLHE----MILV---------CNAYRKD-LQHPNEYIRGSTLRFLCKLKEPE-----LLEPLMPSI 139 (948)
T ss_pred ---HHccccCCCcccHHH----HHHH---------HHHHhhh-ccCchHhhcchhhhhhhhcCcHH-----HhhhhHHHH
Confidence 122232 22333211 1122 2333333 37888889999999988765421 134788888
Q ss_pred HhcCCCCCcHHHHHHHHHHHHHHHhhhC------hh-HHHhhh-cccH-----HHHHHH-----------HHHHhcCCCC
Q 000369 764 KDTGLQSSAAATRNATIKLLGALHKFVG------PD-IKGFLA-DVKP-----ALLSAL-----------DAEYEKNPFE 819 (1610)
Q Consensus 764 ~~~gl~~~n~~VR~aA~~ll~~Ly~~~G------~~-l~~~l~-~lkp-----~ll~~L-----------~~ef~k~~~~ 819 (1610)
+.+ |+|.++=||+.|+-++.++|+... +. +..||. +.-| +.+-.+ ..-+++++.=
T Consensus 140 rac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~ 218 (948)
T KOG1058|consen 140 RAC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSF 218 (948)
T ss_pred HHH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCc
Confidence 885 999999999999999999997621 22 445662 2222 222222 1112222110
Q ss_pred CCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCC----------
Q 000369 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ---------- 889 (1610)
Q Consensus 820 ~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~---------- 889 (1610)
+ +++...--+++...--.+-.+|..-++.+-.++...+....
T Consensus 219 ~----------------------------~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 219 N----------------------------DSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred c----------------------------HHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 0 01110001222222223344444445555555543211111
Q ss_pred CCChhhHH----HHHHh---ccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000369 890 PAGTGELF----GGLRG---RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1610)
Q Consensus 890 ~~~~~eL~----~~L~~---~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~ 962 (1610)
.++ ...+ ..+.. ...|.|. ..--+.-|..+. ..-+..+..++..++..|....-.||.-+..-.-.
T Consensus 271 S~~-p~alk~Aa~~~i~l~~kesdnnv--klIvldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ld 343 (948)
T KOG1058|consen 271 SND-PTALKAAASTYIDLLVKESDNNV--KLIVLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALD 343 (948)
T ss_pred cCC-HHHHHHHHHHHHHHHHhccCcch--hhhhHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHh
Confidence 001 1111 11222 2245553 333344444443 33456677888889999999999999987777777
Q ss_pred HHHhcCchhhHHHHHHHHhcC----c-CChhhHHHHHHHHHHHhccCCCCCchhhhHHH-HHHhcCCCCHHHHHHHHHHH
Q 000369 963 WLAAVHLDKMVPYVTTALTDA----K-LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 963 ~~~~~~l~~ll~~l~~~L~~~----~-~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l 1036 (1610)
++.+-....++..+..-+... . -+-.=|+.++.-+..+..+.+ +...-+.| ++..+.|.|+.--...-..+
T Consensus 344 LvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~Fv 420 (948)
T KOG1058|consen 344 LVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFV 420 (948)
T ss_pred hhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 776666777666655554311 0 023347888888877655544 44555555 77889999885444443333
Q ss_pred HHHHHHhC
Q 000369 1037 VEILRAGG 1044 (1610)
Q Consensus 1037 ~~l~~~~G 1044 (1610)
...+..++
T Consensus 421 rE~iek~p 428 (948)
T KOG1058|consen 421 REAIEKFP 428 (948)
T ss_pred HHHHHhCc
Confidence 44444443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.28 Score=60.55 Aligned_cols=119 Identities=20% Similarity=0.121 Sum_probs=88.3
Q ss_pred HHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhH
Q 000369 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1610)
Q Consensus 326 l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl 405 (1610)
.+..|...+.|.+..|+..+.+.++.+ .-....+.|+..+++..+.|+.++..++... . .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-~------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-R------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-c------cChH
Confidence 478888888999998898888888754 2345667788888999999997776544432 1 1235
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000369 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1610)
Q Consensus 406 ~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l 472 (1610)
+.+...+++.+|.||.+++..|..+=. ...+|.|..++.|.+++||.+|..++..+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 667778889999999999888765211 23456677889999999999999998543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.44 Score=59.77 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=131.1
Q ss_pred ccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhCh
Q 000369 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1610)
Q Consensus 849 dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~ 928 (1610)
|+...+-.-++...++++-++|...++-+..++.+ +..|-...|..|...|..|+.|--++|+.+|+.++..+=..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 33333334566778899999999999999888763 34455555777888888999999999999999988776421111
Q ss_pred hHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCC
Q 000369 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1610)
Q Consensus 929 ~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~ 1008 (1610)
+ +--+..++-.+++ .|..+.||.+|..++.- -...+|.|.+--.+- +...|.-+...+...+ ... ..
T Consensus 160 e-e~~v~n~l~~liq--nDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 E-ECPVVNLLKDLIQ--NDPSDEVRRAALSNISV------DNSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred C-cccHHHHHHHHHh--cCCcHHHHHHHHHhhcc------CcccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 1 1112223333332 79999999998665521 123567666666643 4556777766665544 221 11
Q ss_pred chhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh-----HHHHHHHHHhh
Q 000369 1009 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP-----ALALILERIKL 1069 (1610)
Q Consensus 1009 ~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~-----~~~~i~~~l~~ 1069 (1610)
.....+.-+-.+|+|+.-+||.+++.++..=.-.+....+...+..|+-+ ..+.|.+.++.
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 22233333556999999999999999986433333344566678888743 33445555543
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=94.41 E-value=12 Score=43.60 Aligned_cols=188 Identities=12% Similarity=0.150 Sum_probs=123.3
Q ss_pred ChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc--cccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHH
Q 000369 866 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 943 (1610)
Q Consensus 866 ~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~--Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~ 943 (1610)
+|..=..++..+..++. .+.+.+....+++..+.+... .--...|....+++..+...-...+......++..+++
T Consensus 53 D~~~~~~~l~gl~~L~~--~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~ 130 (262)
T PF14500_consen 53 DHACVQPALKGLLALVK--MKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ 130 (262)
T ss_pred cHhhHHHHHHHHHHHHh--CcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH
Confidence 44444455667777763 244444444556666554332 23345677778888888776555566666778888888
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------cC-cCCh--hhHHHHHHHHHHHhccCCCCCchhh
Q 000369 944 CL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DA-KLGA--EGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1610)
Q Consensus 944 ~l-~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~-------~~-~~~~--~~R~~~l~~L~~~l~~~~~~~~~~~ 1012 (1610)
.+ |++.|.----+-.-+..+.....+..+.+.+.+.+. .+ .-+| -.|.++-.-|..++... +.+.+
T Consensus 131 ~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~---~~fa~ 207 (262)
T PF14500_consen 131 LIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST---PLFAP 207 (262)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc---HhhHH
Confidence 77 456665444455555566666666666666666553 11 1011 25667777777776554 34667
Q ss_pred hHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChh
Q 000369 1013 LLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1058 (1610)
Q Consensus 1013 ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~ 1058 (1610)
.+.| ++..|....+.|+.-+-+.|.......|.+.+.++...+=.+
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 7777 788999999999999999999999999999999988665433
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.9 Score=48.31 Aligned_cols=302 Identities=15% Similarity=0.126 Sum_probs=167.0
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHH-ccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~-a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
|.+.+.+-+.+-+....|.-++++++.. .++.|++-.-.-+++-+.+.+ ...+..+.-.|.=++..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 4566667777888888999999999863 456666542233455555555 33445555667677777776543221101
Q ss_pred h-hhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cc------hhhHHHHHHHHhcCcCChhh-HHHHHHHHHHHhccC
Q 000369 934 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL------DKMVPYVTTALTDAKLGAEG-RKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 934 ~-~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~-~l------~~ll~~l~~~L~~~~~~~~~-R~~~l~~L~~~l~~~ 1004 (1610)
+ ..-+|-+++.|.++...||+.+.=||..++.-. +. .-.++.+...|.+.. +.. -..-+.|...-+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence 1 135788999999999999999999998876432 11 112344555555432 211 133456655544432
Q ss_pred CC-CCch--hhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhcCCCCCCCCCC
Q 000369 1005 SG-FPDA--AHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1610)
Q Consensus 1005 ~~-~~~~--~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~~~~~~~~~~~ 1080 (1610)
.. .++. .....| +.+.+.-.+++|-.-|+=++..+.. .+.+.+.-. |+......+.+.+-.-.
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~~E~i~av---ld~g~~~RLvElLs~~s--------- 298 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GPNEKIQAV---LDVGIPGRLVELLSHES--------- 298 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-CcHHHHHHH---HhcCCcHHHHHHhcCcc---------
Confidence 22 3443 233344 6677888899988877766655432 222333322 22222222333332100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCccccchhhhhhcccc---------ccCCCChHHHhhhhhcccc
Q 000369 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKDSNKEDRERMVVRRFK 1151 (1610)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~R~~~~~~k~~ 1151 (1610)
..++.|+.|+. +--..| .+.+++.++ .+.++ +.+++|+. .=|.
T Consensus 299 ------------a~iqtPalR~v---GNIVTG-----------~D~QTqviI~~G~L~a~~~lLs~-~ke~irKE-aCWT 350 (526)
T COG5064 299 ------------AKIQTPALRSV---GNIVTG-----------SDDQTQVIINCGALKAFRSLLSS-PKENIRKE-ACWT 350 (526)
T ss_pred ------------ccccCHHHHhh---cCeeec-----------CccceehheecccHHHHHHHhcC-hhhhhhhh-hhee
Confidence 00111111110 000000 011222111 11122 33344322 2387
Q ss_pred ccCCChhhHHHHHHHHHhhhhHHHHHhhccccHHHHHHHHHHHHHhcCC
Q 000369 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1200 (1610)
Q Consensus 1152 ~~~p~~e~~e~L~~q~~~~~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~ 1200 (1610)
....+.-..|+.+.-|...+-+-|+.+|.+.||+.+.+|.=.+...-.+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7666666778888888888888999999999999999999888876554
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.99 E-value=22 Score=44.29 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHh--hhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhH---HHHHHHhhcCCh
Q 000369 344 EAIQAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV---EDVKTSVKNKVP 417 (1610)
Q Consensus 344 ~A~~~i~~La~~L--~~~f-~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl---~~l~~~l~~Knp 417 (1610)
.+-.++..|+.-+ |..| +..+..++-.+++.|..+....|++..-++..+-.- + ++++ ..|+.-++.+.|
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~ 115 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVP 115 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCc
Confidence 3444555666544 5678 578999999999999999999999999999888653 1 3333 344555667777
Q ss_pred -HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000369 418 -LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 466 (1610)
Q Consensus 418 -~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~ 466 (1610)
.+|-.++.-|.+.+..... ..+-..+..++-|+.+.+|.+|.
T Consensus 116 ~~~kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 116 DDVKPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred cccccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 7888888888887765432 33445567788999999988874
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.92 Score=53.61 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHccccCCCC----ChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH
Q 000369 869 VRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1610)
Q Consensus 869 ~R~eale~l~~ll~~a~~~i~~~----~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~ 944 (1610)
+...|+|..+.|.+. +.+. ++.=....|...+.-+.-.|+-.-++++..-.--+|+.+.+..+.++..++-.
T Consensus 71 VH~KaLevY~~IF~~----ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFER----IGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHHh----cCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 445677766655542 2221 11223455556667777888888999999888899999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCC------C--------CCch
Q 000369 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1610)
Q Consensus 945 l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~------~--------~~~~ 1010 (1610)
+.|....+.+.+...++.+...++-+.+...+...+.+ +|..|..++.|+.+.+.... . .++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999988888888877764 57899999999999998866 1 1222
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 000369 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1610)
Q Consensus 1011 ~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1610)
.-++..+..+++|.+-=|+..+-..| ..+++
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 23445588899999888887765554 55554
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.61 Score=48.87 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=77.5
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~llp 939 (1610)
+...||..=.+ +-..+.. . +..-.+.+.+|++||...|.+++..||.++..+++..|..|... .+.|+.
T Consensus 13 l~~~dw~~il~----icD~I~~--~---~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLILD----VCDKVKS--D---ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHHH----HHHHHhc--C---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 44568965433 4444431 1 22247899999999999999999999999999999999998754 456888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcC
Q 000369 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+.+.+.+ ....|++-+...+..|.....
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 88888877 778899999999999998775
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.36 Score=63.93 Aligned_cols=177 Identities=17% Similarity=0.165 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHcc---CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000369 300 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1610)
Q Consensus 300 ~~R~eal~~L~~l~~--~~ki~~~~~~~l~~~L~~~l~---D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~k 374 (1610)
-+|+.|--.|..+.. ++.+. ..|..+-+.|.+.+. |.|- -....+.....++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 468877777766653 22111 123344445555544 3341 2344456666677777777777 77899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcCCC-hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHh
Q 000369 375 LKEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 453 (1610)
Q Consensus 375 lkdkk~~V~~aa~~al~ai~~~~~~~-l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~ 453 (1610)
....-..+|-++..|+..+++..|.. ...+++.+..-++.-.--+|++...-+-.++.......+..+..-++|.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 99999999999999999999862211 22344555555554445566666555555555443334556778899999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 454 LNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 454 l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
+.|....||++|.+++..+..+++.+
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999998854
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.9 Score=56.32 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=113.9
Q ss_pred hccCChHHHHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000369 294 VKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1610)
Q Consensus 294 l~s~kW~~R~eal~~L~~-l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll 372 (1610)
+.+++=.+|.+|++.+.+ +..+ .|...++..+.|-+.--|.-+.+..---+...++.= ...+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~----P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK----PELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHH
Confidence 667777889999998765 4443 245667766666555445555554444444444321 145788899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh-HHHHHH
Q 000369 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1610)
Q Consensus 373 ~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 451 (1610)
+-++|+++.+|-.|..++..+=.. -=++.+++.|...+.|+++.||..++-.+..+++..+ .- +... .+..+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998776666544221 1134456667788899999999999999998886432 11 2233 456677
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHH
Q 000369 452 ECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 452 ~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
..+.|++|.|-..|..+|..+..-
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 788999999988887777666543
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.78 Score=47.69 Aligned_cols=98 Identities=14% Similarity=0.288 Sum_probs=77.1
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~llp 939 (1610)
+.+.||..= -++..++.. .+..-.+.+.+|++||+..|.++...||.++..+++..|..|...+ +.|+.
T Consensus 14 l~~~dw~~i----leicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAI----QAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHH----HHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 456788754 344444432 2233478999999999999999999999999999999999997543 56888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000369 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D------~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+++.+.. ....|++-+...+..|....+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88887753 467899999999999998775
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.57 E-value=45 Score=46.52 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=90.2
Q ss_pred cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCCh
Q 000369 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1610)
Q Consensus 359 ~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~--~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~ 436 (1610)
.|..-...++..++--+++....+|.-|..|+..|+... .....++...+..-+.+....||..++..+++++-..+.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 344444555666667778999999999999999998751 122345666666777788899999999999999886543
Q ss_pred hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 437 ~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
....+-..+...+.|+.-.||+.+.+-+..++.-.++
T Consensus 889 -----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 889 -----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred -----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 2366778899999999999999999999999987764
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=3.3 Score=54.32 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=56.1
Q ss_pred hccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHH
Q 000369 294 VKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLL 368 (1610)
Q Consensus 294 l~s~kW~~R~eal~~L~~---l~-~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~-~~~~~ll 368 (1610)
+++++-..|.++|+-+.- ++ +.+...-.-.+.....+..++.+.|..++..|+.||..|+..-|.=.. ++.+.++
T Consensus 812 LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvl 891 (1014)
T KOG4524|consen 812 LSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVL 891 (1014)
T ss_pred hcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 688899999999998764 22 222111111233345566778899999999999999999886654222 5677777
Q ss_pred HHHHHHhcc
Q 000369 369 PVLLEKLKE 377 (1610)
Q Consensus 369 p~Ll~klkd 377 (1610)
|.+-..+.+
T Consensus 892 P~l~~~~~~ 900 (1014)
T KOG4524|consen 892 PWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHH
Confidence 776554443
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.65 Score=50.49 Aligned_cols=133 Identities=21% Similarity=0.241 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHHh-ChhHHHhhhhHHHHH-----------H-HHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000369 910 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI-----------L-KCLGDNKKHMRECTLTVLDAWLAAVH-------- 968 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~l-g~~~~~~~~~llp~l-----------l-~~l~D~k~~Vr~aa~~aL~~~~~~~~-------- 968 (1610)
+|+..|+.+++.+++.. ++.|..|-..++|.- + -.+.|..+.||.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999995 555777877777765 2 34579999999999999999987641
Q ss_pred --------------chhhH----HHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC---Cch-hhhHHHHHHhcCCCCH
Q 000369 969 --------------LDKMV----PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDA-AHLLKPASIAMTDKSS 1026 (1610)
Q Consensus 969 --------------l~~ll----~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~---~~~-~~ll~pl~~~L~D~~~ 1026 (1610)
+..++ ..+..+|+.++ ++..-..+++.+..++...+-. .++ ..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 11111 12445555443 5566678888888877776542 233 3344446677888999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000369 1027 DVRKAAEACIVEILRAG 1043 (1610)
Q Consensus 1027 dVR~aA~~~l~~l~~~~ 1043 (1610)
+||.++-.||+.+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887653
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=22 Score=47.08 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000369 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 912 ~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
....+.-|+.++..+|..|.+.+-..+=+++.++++..+.|+..|..|+.+++.+|+++
T Consensus 565 ~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~ 623 (1014)
T KOG4524|consen 565 VCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG 623 (1014)
T ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC
Confidence 34557889999999999999999999999999999999999999999999999999853
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.7 Score=53.48 Aligned_cols=200 Identities=18% Similarity=0.199 Sum_probs=128.5
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh
Q 000369 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1610)
Q Consensus 856 ~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~ 935 (1610)
.-++.+.++++-++|+..++-+.-+... -+.|-...|.-|..-|..|+-|-.+.|+.+|+.++..+-.--+. =+....
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n-een~~~ 171 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN-EENRIV 171 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-hHHHHH
Confidence 3566778999999999999988777653 23333344566777788899999999999999999887533332 233333
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC--Cchhhh
Q 000369 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHL 1013 (1610)
Q Consensus 936 ~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~l 1013 (1610)
.++-.++ -.|....||.+|. ++-.+.+- ..|.+.+-..+- +..-|..+... ++.+++.. ....+-
T Consensus 172 n~l~~~v--qnDPS~EVRr~al--lni~vdns----T~p~IlERarDv--~~anRr~vY~r---~Lp~iGd~~~lsi~kr 238 (885)
T COG5218 172 NLLKDIV--QNDPSDEVRRLAL--LNISVDNS----TYPCILERARDV--SGANRRMVYER---CLPRIGDLKSLSIDKR 238 (885)
T ss_pred HHHHHHH--hcCcHHHHHHHHH--HHeeeCCC----cchhHHHHhhhh--hHHHHHHHHHH---Hhhhhcchhhccccce
Confidence 4444443 3788899999973 33333333 345566555532 34446555444 34444431 122233
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCChhHHHHHHHHHhhc
Q 000369 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1610)
Q Consensus 1014 l~pl~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~~~~~~i~~~l~~~ 1070 (1610)
+.-+--+|+|+.-+||.++..++..-...--.-.....+..|+-+.+..+..++++.
T Consensus 239 i~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 239 ILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333345899999999999999887554444444556678888888777666776654
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.43 Score=61.59 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhh---h-cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---T-HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-- 396 (1610)
Q Consensus 323 ~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~---~-~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~-- 396 (1610)
|+++++.|...+.-.-..+. +..+..|+..++ + -.-|....++|-||+.+.-.-..|+-++..++..+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K---~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK---HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHhhHHHHHHHhccCCccch---hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 45666666665541111011 223333343333 2 24478889999999999999999988888888887654
Q ss_pred --cCCChHhhHHHHHHHh-hcCC--hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000369 397 --GCLNLVDVVEDVKTSV-KNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 397 --~~~~l~~vl~~l~~~l-~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~ 471 (1610)
.+.+++-++|.++.-- .++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|+..-||+.|..+=..
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 1244566777776533 3554 5799999999998877788877878889999999999999999999999887654
Q ss_pred HH
Q 000369 472 IA 473 (1610)
Q Consensus 472 l~ 473 (1610)
..
T Consensus 1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred hh
Confidence 44
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.87 Score=47.17 Aligned_cols=100 Identities=21% Similarity=0.371 Sum_probs=76.9
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh-hh-hHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SK-GVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~-~~-~llp 939 (1610)
+.+.+|..= -++..++.. . +..-.+.+.+|+++|+..|++++..|+.++..+.+..|..|... .. .++.
T Consensus 13 ~~~~D~~~i----l~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALN----LELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHH----HHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 356788753 345445532 1 33348899999999999999999999999999999999998754 33 5777
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000369 940 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 940 ~ll~~l~D---~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.+.+.+.. ....|+.-+...+..|....+-+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46789999999999999887643
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.64 E-value=28 Score=44.49 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=173.5
Q ss_pred hhcCC-ChhhHHHHHHHHHHHHhhhhhhhHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhh
Q 000369 101 KCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177 (1610)
Q Consensus 101 K~l~~-k~~~k~~a~~~ll~~~e~~~~~~v~~~L~~~l~--~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll 177 (1610)
|-|.+ .+.-.-.|..|+-..-+.+-.+.+.+.+-+-+- .--+=++..+-.+|..+++.+ +..+++..+...+..++
T Consensus 118 nDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~~~~~W~~riv~LL 196 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLVNPGEWAQRIVHLL 196 (938)
T ss_pred hhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC-ccccChhhHHHHHHHHh
Confidence 33443 344445677766665555555555555544442 222334455556666666663 45678888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCC---------CCC---cccchhhhhHhh
Q 000369 178 DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT---------ARP---TRKIRAEQDKEL 245 (1610)
Q Consensus 178 ~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~---------~~p---~r~~rs~~~~~~ 245 (1610)
+|.+=+|-.++.+++..|.++..+. .+. --+-++..|..-.-...-+ +.| +...|--|.-
T Consensus 197 ~D~~~gv~ta~~sLi~~lvk~~p~~-yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-- 268 (938)
T KOG1077|consen 197 DDQHMGVVTAATSLIEALVKKNPES-YKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-- 268 (938)
T ss_pred CccccceeeehHHHHHHHHHcCCHH-Hhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC--
Confidence 9999999999999999998888653 222 2223345554332221100 111 0111111110
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhccCChHHHHH---HHHHHHHHhcCCCCCCCC
Q 000369 246 GQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGD 322 (1610)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~e---al~~L~~l~~~~ki~~~~ 322 (1610)
....+. +... .-.+.. ..|+.+.- +-..++|-+.+-. .|-+...++-+-.-++.-
T Consensus 269 ------p~~~D~---~~r~------~l~evl--~~iLnk~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l 326 (938)
T KOG1077|consen 269 ------PTPEDP---STRA------RLNEVL--ERILNKAQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL 326 (938)
T ss_pred ------CCCCCc---hHHH------HHHHHH--HHHHhccc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH
Confidence 000000 0000 000000 12222221 0113444444432 233333333222222334
Q ss_pred hHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCC
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLN 400 (1610)
Q Consensus 323 ~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~-~~~~~llp~Ll~klk-dkk~~V~~aa~~al~ai~~~~~~~ 400 (1610)
+..-+..|.+.|.+.-.+++..|+..+..|+.. .|. .-++.-.-.++..++ |+-..||.-+...|-+|+.. ..
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~N 401 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SN 401 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hh
Confidence 566777888888876667788888887777765 343 334555778889998 88899999999999888875 56
Q ss_pred hHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCC
Q 000369 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1610)
Q Consensus 401 l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~ 435 (1610)
...|+++++..+.+-.+++|++...=++.+.++..
T Consensus 402 ak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 402 AKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999998877776666654
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=92.49 E-value=41 Score=43.19 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=72.8
Q ss_pred hhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCChHhhHHHHHHHhhcC--ChHHHHHHHHHHHHHHH
Q 000369 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 357 ~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~--~~~~l~~vl~~l~~~l~~K--np~vR~~~l~~L~~~l~ 432 (1610)
...|++....++|++|.|+...-..||..+.+.+..+... ....+.-=++.|+...++. ++.+|..++-|+...++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3468889999999999999999999999999999887765 1122222245566655543 59999999999999999
Q ss_pred hCChhHHHHhhhhHHHHHHHhhcC
Q 000369 433 TSSKAAVLKVHKDYVPICMECLND 456 (1610)
Q Consensus 433 ~~~~~~l~~~l~~l~p~l~~~l~D 456 (1610)
+.+...- ..++|.+++++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISK 113 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhcc
Confidence 8876544 4677888888753
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.67 Score=48.48 Aligned_cols=107 Identities=28% Similarity=0.517 Sum_probs=76.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~llp 939 (1610)
+.+.+|.. +-.|-+.+.. . +..-.+.+.+|+++|...|.+++..||.++..+++..|..|...+ +.|+.
T Consensus 18 ~~~~Dw~~----~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWSL----ILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HHH----HHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 45668854 3345555542 1 222488999999999999999999999999999999999987543 45777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHHHH
Q 000369 940 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPYVT 977 (1610)
Q Consensus 940 ~ll~~l~D~k~--~--Vr~aa~~aL~~~~~~~~l~~ll~~l~ 977 (1610)
.+...+.++.. . |++-+...+..|....+-+.=++.+.
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~ 130 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQ 130 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHH
Confidence 77776654332 2 89999999999999885433334333
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.3 Score=46.34 Aligned_cols=100 Identities=20% Similarity=0.360 Sum_probs=76.0
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~llp 939 (1610)
+.+.+|..=.+ +-.++.. .. ..-.+.+.+|++||...|.+++..|+.++..+++..|..|... .+.|+.
T Consensus 17 l~~~dw~~ile----icD~In~--~~---~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 17 LGEPDLASILE----ICDMIRS--KD---VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred cCccCHHHHHH----HHHHHhC--CC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 35668875444 4444432 22 2248899999999999999999999999999999999998753 345777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000369 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 940 ~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.+...+. .....|++-+...+..|.....-+
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7776665 466789999999999999887543
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.13 E-value=19 Score=50.17 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhhhccch--h----hHHHHHHHHHHHhhhChhhHHHHHHhhhhcCCCHhHHH
Q 000369 663 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK--T----RAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (1610)
Q Consensus 663 ~l~~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K--~----r~~a~~~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~ 736 (1610)
.++++..++....... ..+|..++.+++.+. + +..|.+++..++.+..+. +.+.+.+.+...++ . ..
T Consensus 164 ~~~i~~~li~e~d~v~----~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQ----SELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhccch----HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 6666666665432222 345556666666542 2 344555555555554432 23333333322221 1 11
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhc
Q 000369 737 EGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815 (1610)
Q Consensus 737 ~~l~~l~~~i~~fg~~~l-~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k 815 (1610)
..-.-.+++|-+...-.. -+-.+|+++..- |.+.+-.+|-.|..++|.|+...+..+. + .
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~ 297 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------T 297 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------c
Confidence 111122223322211000 123577777765 8899999999999999999854432210 0 0
Q ss_pred CCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhh
Q 000369 816 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 895 (1610)
Q Consensus 816 ~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~e 895 (1610)
.+ .+-..|+..+.|..-.+|.+.++..-.++.. ++.+... ..
T Consensus 298 -----------------------------~~------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 298 -----------------------------YD------DLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred -----------------------------ch------HHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 00 1335788889999999999999998887763 2222221 34
Q ss_pred HHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000369 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1610)
Q Consensus 896 L~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~ 966 (1610)
+..+|+.+..|.+-.++...+..... .+.-.+ .+...++-.+.+.+.|++..||..|+..|..++.+
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~---v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACD---VMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEee---hhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56667777777776665543222111 111111 22222667777889999999999999999999986
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.5 Score=44.07 Aligned_cols=97 Identities=18% Similarity=0.328 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh--HHHH
Q 000369 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSD 940 (1610)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~--llp~ 940 (1610)
++..|..-...+.++..++.. .+..+.+++.+|.+||.+.|..++..||.++..+++..|..|..++.. ++-.
T Consensus 10 ~~~~~~p~~~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~ 84 (115)
T cd00197 10 SNENMGPDWPLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVE 84 (115)
T ss_pred CCCCCCCCHHHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHH
Confidence 333444444556666666642 133368999999999999999999999999999999999998876533 3333
Q ss_pred HHH-----Hh-CCCcHHHHHHHHHHHHHHH
Q 000369 941 ILK-----CL-GDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 941 ll~-----~l-~D~k~~Vr~aa~~aL~~~~ 964 (1610)
++. .. .+....||+.+...+.+|.
T Consensus 85 l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 85 LLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 332 11 2456789999999999885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.2 Score=46.11 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=74.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~llp 939 (1610)
+.+.+|..=.+ +-.++.. . +..-.+.+.+|++||...|.+++..|+.++..+++..|..|...+ +.|+.
T Consensus 13 l~~~dw~~~l~----icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELILE----ICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHHH----HHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 45678875443 4444432 1 222488999999999999999999999999999999999987543 45777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcC
Q 000369 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D~k~--~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+...+.++.. .|++.+...+..|.....
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 77766665432 399999999999998774
|
Unpublished observations. Domain of unknown function. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.03 E-value=5.4 Score=50.42 Aligned_cols=148 Identities=21% Similarity=0.268 Sum_probs=106.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCC
Q 000369 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1610)
Q Consensus 767 gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~p 846 (1610)
||+..|.+||..|..++..+|=..|++... .++=..++++|+
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~------e~mD~i~~kQf~-------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHA------EEMDSIIQKQFE-------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccH------HHHHHHHHHHHH--------------------------------
Confidence 589999999999999999999888877521 111122333332
Q ss_pred ccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhcc-ccccHhHHHHHHHHHHHHHHH
Q 000369 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1610)
Q Consensus 847 r~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L-~Dsn~~v~~~al~~l~~la~~ 925 (1610)
.+++.++|.=-.+|.+|+..+.++....=.-|.++...+++.-+.+-+ .|+-..|+....+.|.+|+-
T Consensus 224 ----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 224 ----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 244445666667899999999888875323344555566666665555 58878899888888888754
Q ss_pred hChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000369 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1610)
Q Consensus 926 lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~ 964 (1610)
.+...+.++.++|.+=-.+-|+...||-|+...|-.+-
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 34456778889998888999999999999888776653
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=91.80 E-value=33 Score=42.27 Aligned_cols=312 Identities=15% Similarity=0.163 Sum_probs=163.5
Q ss_pred hcCCchhHHHHHHHHHHHHhhccCCCCc-hhhhhhhhh----hHhhhcC-------CcHHHHHHHHHHHHHHHHHhchh-
Q 000369 20 LLHKNWKVRNEANIDLAALCDSITDPKD-NRIRELGPL----FKKTVAD-------SNAPVQDKALDALIAYLKAADAD- 86 (1610)
Q Consensus 20 l~~k~WK~R~~ayeel~~~~~~~~~~~~-~~~~~~~~~----~~k~v~D-------sN~~~q~~~leal~~~v~~~~~~- 86 (1610)
|.+.+=-.|.+||-.|...++......+ ....+..++ ++.=+.. .+...-..||.++..|+-...-.
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4455566899999999999986432212 222222222 2222222 24566677888888887553210
Q ss_pred -hh-hhhHHHHHHHHhhhcCCChhhHHHHHHHHHHHHhh---------hhhhhHHHHHHH---HhhcCChhhHHHHHHHH
Q 000369 87 -AG-RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL---------EAVDVFLDVMEK---AIKNKVAKAVVPAIDVM 152 (1610)
Q Consensus 87 -~~-~~~~~v~~~lveK~l~~k~~~k~~a~~~ll~~~e~---------~~~~~v~~~L~~---~l~~KnpKv~~~~l~~l 152 (1610)
.. .....++...++. +.....-|..+...+-.+.+- +.++.++..+.. .+.++ -++.+.+.++
T Consensus 82 ~l~~d~~~~~i~~~i~~-l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~--si~~erL~i~ 158 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIES-LQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSK--SIISERLNIY 158 (372)
T ss_pred hCChHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCch--hHHHHHHHHH
Confidence 01 1111233333333 221112233333322222211 112223333211 22233 4789999999
Q ss_pred HHHHHHhCCC-CcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhCCchhhHHHhhhChHHHHHHHHHHHHhcCCCC
Q 000369 153 FQALSEFGAK-IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 231 (1610)
Q Consensus 153 ~~~l~~fG~~-~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG~~~~~~~l~~~lk~~q~kele~~f~~~~~~~ 231 (1610)
..++.+|-.. .-.....++.+...+-|..+.+|..|..+..++-..+|++ ..+. +.+.+.++..-.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~~~~~~~~~-- 225 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVLEDLQRSLE-- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHHHHhccccc--
Confidence 9999988542 2235567888888888999999999999999998888864 1111 111111111000
Q ss_pred CCcccchhhhhHhhhhhccccCCCCCCCCCCCCCCCCCCCCccCCCcccccCcCccchhhhhhcc-CChHHHHHHHHHHH
Q 000369 232 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWSERKDAVAELT 310 (1610)
Q Consensus 232 ~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~id~~d~~~~vdIl~kl~~~~f~~~l~s-~kW~~R~eal~~L~ 310 (1610)
+.++. +. +. +.+.+.+.+ ++.+.=-..--.+.
T Consensus 226 -~~~~~------------------------------------------~~---~~-~~L~~mi~~~~~~~~a~~iW~~~i 258 (372)
T PF12231_consen 226 -NGKLI------------------------------------------QL---YC-ERLKEMIKSKDEYKLAMQIWSVVI 258 (372)
T ss_pred -cccHH------------------------------------------HH---HH-HHHHHHHhCcCCcchHHHHHHHHH
Confidence 00000 00 00 011111122 11111011112233
Q ss_pred HHhcCCCCCCC-ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcc---hhhhhhHHHHHHHHhccCcH-----H
Q 000369 311 KLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLKEKKP-----T 381 (1610)
Q Consensus 311 ~l~~~~ki~~~-~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f---~~~~~~llp~Ll~klkdkk~-----~ 381 (1610)
.++..+.+... .+.+.+....+++++.+..+...|..+-..+...+..+- ....+.+..++...++.++. .
T Consensus 259 ~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~ 338 (372)
T PF12231_consen 259 LLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEE 338 (372)
T ss_pred HHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHH
Confidence 34444445543 357888889999999999999999999999988665442 34566677777666654432 4
Q ss_pred HHHHHHHHHHHHH
Q 000369 382 VAESLTQTLQAMH 394 (1610)
Q Consensus 382 V~~aa~~al~ai~ 394 (1610)
++..+...+..++
T Consensus 339 ~~~~ll~~l~~ll 351 (372)
T PF12231_consen 339 VWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHhchH
Confidence 4555555555544
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.68 E-value=6.1 Score=46.80 Aligned_cols=179 Identities=18% Similarity=0.215 Sum_probs=116.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhh-hHHH
Q 000369 863 ESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-GVLS 939 (1610)
Q Consensus 863 ~d~~Wk~R~eale~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~-~llp 939 (1610)
.+.+-..|..+++.|+.++..-. ..+.+ +|-+...|. .+++++..++..|..+|+..++.-.+.-+...+ ..++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 34467788899999999987511 12222 244455554 889999999999999999988764443333333 2677
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--chhhHH-----HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCc-h
Q 000369 940 DILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-A 1010 (1610)
Q Consensus 940 ~ll~~l~-D~k~~Vr~aa~~aL~~~~~~~~--l~~ll~-----~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~-~ 1010 (1610)
.++..+. |..-.+|..|.-|+.+++++-. .+.+++ .|.+.|+++..+...+.-++..+..++.......+ .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7877775 4556788999999999998853 455554 57888886433566777888888887776654322 2
Q ss_pred hhhHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 000369 1011 AHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1610)
Q Consensus 1011 ~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1610)
.....+ +.....--+.+++.++..++-.+.....
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 222222 2222333356778877776665554443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.50 E-value=3.2 Score=54.21 Aligned_cols=185 Identities=18% Similarity=0.128 Sum_probs=110.8
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHH-HHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~-~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ 940 (1610)
+.+++-+.|.+|+..+-..+..+ +++..++. .++... --|..+....=--+...+ ...+ ..+...++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~ya-k~~P---~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYA-KLKP---ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHh-ccCH---HHHHHHHHH
Confidence 67788889999999866555432 22344443 333333 333344433211121221 1122 445667889
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhh--hHHHHH
Q 000369 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPAS 1018 (1610)
Q Consensus 941 ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~ 1018 (1610)
+.+-++|.++.+|..|..++..+-..-=++.+++.|...+.++ ++.+|..+.-.+..++.--+. ...+ .+..+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~--l~~~~g~~~~l~ 172 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKD--LYHELGLIDILK 172 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHh--hhhcccHHHHHH
Confidence 9999999999999999988876522111234445555666666 799999999998887644322 1122 223344
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHH--hCh-HHHHHHhhcCChhHHH
Q 000369 1019 IAMTDKSSDVRKAAEACIVEILRA--GGQ-ETIEKNLKDIQGPALA 1061 (1610)
Q Consensus 1019 ~~L~D~~~dVR~aA~~~l~~l~~~--~G~-~~~~~~l~~L~~~~~~ 1061 (1610)
..+.|.++.|-.+|..+|..+..- .|+ ..+...+..|......
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~ 218 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLS 218 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhh
Confidence 566899999999999888777643 121 2333445666644443
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=91.40 E-value=3.2 Score=43.55 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=68.7
Q ss_pred CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~~~l~D-~~~~VR~aA~~al~~l~~~ 475 (1610)
..+..+.+..|..-++|+||.+-..++..|..|+.+++...... .-+.++..+.+.+.+ .++.||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999998753221 236788889999988 8999999999999999988
Q ss_pred hCCh
Q 000369 476 VGMR 479 (1610)
Q Consensus 476 ~g~~ 479 (1610)
+++.
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8854
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.3 Score=50.59 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhchhhhh--hhHHHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhcCChhhH
Q 000369 71 KALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAV 145 (1610)
Q Consensus 71 ~~leal~~~v~~~~~~~~~--~~~~v~~~lveK~l~-~k~~~k~~a~~~ll~~~e~~~--~~~v~~~L~~~l~~KnpKv~ 145 (1610)
+.|..+...+++...+... ...+++..+|-.++- ..+.+|+.|.+|+=.|.=++. ....+..+...+..-.+.++
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 3566667777776533333 234778888877776 478999999999888875543 34556666777766688999
Q ss_pred HHHHHHHHHHHHHhCCCCcC----------hhhHHHhhhhhhCCCCHHHHHHHHHHHHHHH
Q 000369 146 VPAIDVMFQALSEFGAKIIP----------PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1610)
Q Consensus 146 ~~~l~~l~~~l~~fG~~~~~----------~k~il~~l~~ll~~~d~~VR~~a~~l~~ely 196 (1610)
..|+.++..++..||...++ ...+++.+.+.+.+.+++||..|..-+.-|+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999987654 2458889999999999999999988877765
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.1 Score=48.38 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=69.9
Q ss_pred ChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH---HHHh
Q 000369 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI---AKSV 476 (1610)
Q Consensus 400 ~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l---~~~~ 476 (1610)
..+..++.+.+++.++.-.-+--+..-+..+++..+...+.++++.+++.+..+|+-.+++|..++.++|..+ ...+
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3456788888888876655555555555555665444556788999999999999999999999999999999 7888
Q ss_pred CChhHHHhhhhccH
Q 000369 477 GMRPLERSIEKLDD 490 (1610)
Q Consensus 477 g~~~~~~~l~~Ld~ 490 (1610)
|+ ++.||+.+|-+
T Consensus 115 G~-aLvPyyrqLLp 127 (183)
T PF10274_consen 115 GE-ALVPYYRQLLP 127 (183)
T ss_pred hH-HHHHHHHHHHH
Confidence 95 58899877654
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.7 Score=58.54 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=126.8
Q ss_pred ccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCCh-hhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHH
Q 000369 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 931 (1610)
Q Consensus 853 ~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~-~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~ 931 (1610)
.+.|-+++.++..+-.+|.-=|+.+.+.+. .+.+..+ .++++-+...+.|.|..++.++++++..|+..++..
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 355678888899999999998888888775 3443322 568888888999999999999999999999999977
Q ss_pred HhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCcCChhhHHHHHHHHHHHhccCCCC
Q 000369 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1610)
Q Consensus 932 ~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l---~~ll~-~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~ 1007 (1610)
..-..++..+-..-.|....+|+-..-|+..+..+... ..++. .+..+++++- .|....+++...+ ..++...
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccch
Confidence 33345666666666789999999999999888776531 23333 4455677663 2332333333332 2222222
Q ss_pred CchhhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 000369 1008 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1610)
Q Consensus 1008 ~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~G 1044 (1610)
.++..-+.| +....-|.+..||..|..++..+....-
T Consensus 481 ~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 481 SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 333333444 5556689999999999988877665443
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.59 E-value=11 Score=48.13 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=108.4
Q ss_pred HHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhH
Q 000369 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1610)
Q Consensus 326 l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl 405 (1610)
++..|.+...-...+|+...|+.|..+....+.-=+.....+.-.|+.+++|+-++||-.|.-||..+-.-....--++.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~ 165 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV 165 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH
Confidence 33334343333334567777777777665333222355677888999999999999998888888777632111111344
Q ss_pred HHHHHHhh-cCChHHHHHHHHHHHH-------HHHhCC---------------hh-HHH-HhhhhHHHHHHHhhcCCChH
Q 000369 406 EDVKTSVK-NKVPLVRSLTLNWVTF-------CIETSS---------------KA-AVL-KVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 406 ~~l~~~l~-~Knp~vR~~~l~~L~~-------~l~~~~---------------~~-~l~-~~l~~l~p~l~~~l~D~~~~ 460 (1610)
..+...++ +.++.||..++.-+.. .++++. +. .+- ..++.-+-.+-.+|+|..-.
T Consensus 166 n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~s 245 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFS 245 (892)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhH
Confidence 44455555 7889999998865531 111110 00 000 01233445667889999999
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHhhhhcc-----HHHHHHHHHHHhc
Q 000369 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIAG 502 (1610)
Q Consensus 461 VR~aA~~al~~l~~~~g~~~~~~~l~~Ld-----~~~~kki~e~~~~ 502 (1610)
||.|+..++..=.-.+.+..+-.++.+|| ....+.|+..+++
T Consensus 246 Vk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 246 VKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 99999999876444444444667788886 4556667766654
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.7 Score=43.88 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=73.8
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHH
Q 000369 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1610)
Q Consensus 861 ~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ 940 (1610)
..+|.+|-.=.-.+++|.++..+ .+..+.+++..|.+||+|.+..|...+|++|..++..-...|...++.-...
T Consensus 9 ATsdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~ 83 (122)
T cd03572 9 ATSDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQ 83 (122)
T ss_pred HhcCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHH
Confidence 34566666666667777777653 2233689999999999999999999999999999998777888776655443
Q ss_pred HHHHh---C--------CCcHHHHHHHHHHHHHHHH
Q 000369 941 ILKCL---G--------DNKKHMRECTLTVLDAWLA 965 (1610)
Q Consensus 941 ll~~l---~--------D~k~~Vr~aa~~aL~~~~~ 965 (1610)
|-.+. + +....||.+|.+++..++.
T Consensus 84 Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 84 IRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 33222 2 2456799999999988764
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.3 Score=46.45 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=65.0
Q ss_pred hhhhHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCC---CcChhhHHHhhhhhhC-CCCHHHHHHHHHHHHHHHHhhC
Q 000369 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (1610)
Q Consensus 125 ~~~~v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~---~~~~k~il~~l~~ll~-~~d~~VR~~a~~l~~ely~~lG 200 (1610)
++...+.+|.+.+.++||+++.-+|..|-.++++=|.. .+.-+.|+..+.+++. +.+..||+....++.+-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999987763 2345788888888886 6788999999999988887776
Q ss_pred C
Q 000369 201 K 201 (1610)
Q Consensus 201 ~ 201 (1610)
.
T Consensus 118 ~ 118 (142)
T cd03569 118 N 118 (142)
T ss_pred C
Confidence 4
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.3 Score=57.40 Aligned_cols=200 Identities=12% Similarity=0.087 Sum_probs=136.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~ 936 (1610)
.+++.+.-++-..|..|++++.+++...+.......++.....+.+...|.+..|+.++..++..+.+.+++.+.||++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45677888889999999999999987532211111245666777788899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---c-----hhhHHHHHHHHhc------------------CcCChhhH
Q 000369 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---L-----DKMVPYVTTALTD------------------AKLGAEGR 990 (1610)
Q Consensus 937 llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~---l-----~~ll~~l~~~L~~------------------~~~~~~~R 990 (1610)
++|.++-..-|....|..+|-+.+......-. + ..+++.+.+.+.. .+ .+++-
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k-~~Rvi 203 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK-YQRVI 203 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh-hHHHH
Confidence 99999999999999999988888766543111 0 1122222222110 01 12344
Q ss_pred HHHHHHHHHHhccCCCCCc-------hhhhHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHhChHHHHHHhhcCCh
Q 000369 991 KDLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1057 (1610)
Q Consensus 991 ~~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVR~aA~~~l~~l~~~~G~~~~~~~l~~L~~ 1057 (1610)
...+..+..++...+...+ ...+... +...+.++++.||.+..+++-.+...+....+....+.+++
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 5556666666644443211 2223322 66678999999999999999988877766544444444443
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.2 Score=44.64 Aligned_cols=100 Identities=26% Similarity=0.433 Sum_probs=73.7
Q ss_pred cCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccc-cccHhHHHHHHHHHHHHHHHhChhHHHhh--hhHH
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 938 (1610)
Q Consensus 862 l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~-Dsn~~v~~~al~~l~~la~~lg~~~~~~~--~~ll 938 (1610)
+.+.||..=.+-.+ .+.. .. ..-.+.+.+|++||. ..|.+++..||.++..+++..|..|...+ +.|+
T Consensus 14 l~~~dw~~ileicD----~In~--~~---~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICD----IINE--TE---DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHH----HHhC--CC---CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 45668876444333 3321 22 224789999999997 46899999999999999999999988543 4677
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000369 939 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 970 (1610)
Q Consensus 939 p~-ll~~l~D---~k~~Vr~aa~~aL~~~~~~~~l~ 970 (1610)
.. +.+.+.+ ....|++-+...+..|.....-+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 76 6666653 33579999999999999887533
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.71 Score=58.49 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=77.9
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC--CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHH
Q 000369 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~--~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1610)
+|-..++|.|++.|+-.-..||--+..=++.++.+.+ .-.+.|+|.+..++.+.|+.+|..|+..+..++...++..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 5888899999999999999999888777887777621 12457899999999999999999999999988877665543
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000369 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 440 ~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~ 473 (1610)
. .+++..+.+.-.|.++..|....-|++.+.
T Consensus 406 n---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 N---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred c---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 3 233444444444444444444444444333
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.07 E-value=9.8 Score=49.36 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHHhc--CCC-CCCCChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhh-hHHHHHH
Q 000369 298 KWSERKDAVAELTKLAS--TKR-IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 372 (1610)
Q Consensus 298 kW~~R~eal~~L~~l~~--~~k-i~~~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~-~llp~Ll 372 (1610)
+=..-.+|+.+|..++. +.. +..--...++..|.++++ +.|.-+...||+|+.+|+..+.....-.++ ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 55566778888877542 221 221124678999999999 889999999999999999999877654333 5889999
Q ss_pred HHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhhHHH-----HHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhH
Q 000369 373 EKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1610)
Q Consensus 373 ~klkd-kk~~V~~aa~~al~ai~~~~~~~l~~vl~~-----l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 446 (1610)
+|+-. .=-.|.+...+||..|-+. +..+|+.. .+..+.==+-.+.+.++....+|.....+..+ .++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 98865 3446777777888777653 33344321 12222211223444555566666665554443 234567
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 447 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 447 ~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
+|.|...|...+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999998888888888888877776554
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.4 Score=45.44 Aligned_cols=146 Identities=12% Similarity=0.165 Sum_probs=90.2
Q ss_pred CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000369 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 397 (1610)
Q Consensus 321 ~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~--~~ 397 (1610)
.+|.+|+..|.+.++ +.+..++.++++++|.|. ..+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 368999999999998 777899999999999885 345654432211111 100 01111111111111 11
Q ss_pred CCChHhhHH-----HHHHHhhcCC-hHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000369 398 CLNLVDVVE-----DVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1610)
Q Consensus 398 ~~~l~~vl~-----~l~~~l~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~ 471 (1610)
..+.++..+ .++.-+++++ ..-...++..+..++...+... ..+++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123344333 3444455444 3444466667677776555444 56789999999999999999999998888888
Q ss_pred HHHHhC
Q 000369 472 IAKSVG 477 (1610)
Q Consensus 472 l~~~~g 477 (1610)
+...++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 877653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.86 Score=59.00 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=93.6
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc--c-HhHHHHHHHHHHHHHHHhChh-
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--N-KNLVMATLITLGAVASAMGPA- 929 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds--n-~~v~~~al~~l~~la~~lg~~- 929 (1610)
|-|-+++.++=.+-..|...+..+.-++.++ ..+.+.+.+-+++.|...=.|. | ..|+..|++|++.|.+.+...
T Consensus 910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4467888899999999999999999999875 5566655688888887765544 3 457788999999999977654
Q ss_pred HHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000369 930 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1610)
Q Consensus 930 ~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~ 967 (1610)
+-+|-..++.++...|+|+|-.||..|..|=..|+...
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 77899999999999999999999999999999997643
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=89.66 E-value=73 Score=40.95 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=81.4
Q ss_pred ChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCcCChhhHHHHHHHHHHHhc
Q 000369 927 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1002 (1610)
Q Consensus 927 g~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l--~~ll~--~l~~~L~~~~~~~~~R~~~l~~L~~~l~ 1002 (1610)
...+++.+..++|+++.+++.....||..+.+.+..+-..+.. .--+| .|....+++..++.+|.-.+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999998877652 22344 5677777654357899999999988887
Q ss_pred cCCCCCchhhhHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHh
Q 000369 1003 GLSGFPDAAHLLKPASIAMTDKS---SDVRKAAEACIVEILRAG 1043 (1610)
Q Consensus 1003 ~~~~~~~~~~ll~pl~~~L~D~~---~dVR~aA~~~l~~l~~~~ 1043 (1610)
..+. .+-.++++.++.++.... .++.......+..+++..
T Consensus 94 Rl~~-~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~ 136 (501)
T PF13001_consen 94 RLDD-EERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLL 136 (501)
T ss_pred cCCH-HHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcC
Confidence 7743 233455666888886432 333333333444444443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=89.08 E-value=11 Score=44.86 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHHHhc--CCCCCC-CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhc-chhhhhhHHHH
Q 000369 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1610)
Q Consensus 296 s~kW~~R~eal~~L~~l~~--~~ki~~-~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~-f~~~~~~llp~ 370 (1610)
.++|.+--..|..|.+.++ .+.+.- ..=..+.+.|.+++. ..-.-|=..|+.+.+.+.+.++.+ +.......
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~--- 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIY--- 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHH---
Confidence 6889999999999988765 333321 223468888999998 777788899999999999888864 22222223
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHH
Q 000369 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1610)
Q Consensus 371 Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 450 (1610)
.+.|+..+.+-.-+||-..++++...+-..++ .+..+++.++-.+
T Consensus 99 ----------------------------------~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 99 ----------------------------------SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 34444455555667888888888777765566 6677889999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000369 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1610)
Q Consensus 451 ~~~l~D~~~~VR~aA~~al~~l~~~~g~~~ 480 (1610)
..+++|...|+-+...+.+..+...+|++.
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999999763
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.07 E-value=4.3 Score=47.45 Aligned_cols=185 Identities=14% Similarity=0.165 Sum_probs=108.6
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCC-ChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHH
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~-~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~ 932 (1610)
+.+.|+..+.|.+-|++-.|--.++.+.... .++.+- .-|. ++.|.+.|.|+--..+....-||..|+-.-+...--
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~-lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGS-LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCC-chHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 4567777788888888877777777665432 111110 0012 344556667777778888888888887654443211
Q ss_pred hhhhHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccC
Q 000369 933 SSKGVLSDILKCLGDN-KKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 933 ~~~~llp~ll~~l~D~-k~~Vr~aa~~aL~~~~~~~~--l-----~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~ 1004 (1610)
.=..|+.+++..|.-+ +..++=+|..+|..++.... . .--+|.+.+.+.++. -.++.++-..++.+--.-
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALND 407 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhcc
Confidence 1123566666655432 23477777788888776331 1 123566777776653 345666555555432111
Q ss_pred CCCCchh--hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 1005 SGFPDAA--HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 1005 ~~~~~~~--~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
.....+. -++..++..+.|.+.+||-+|.++|..+...
T Consensus 408 ~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 408 NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 1111121 2333366677899999999999999887653
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=88.81 E-value=5.9 Score=47.17 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=90.5
Q ss_pred HHHHHhhhcchh--hhhhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHH
Q 000369 351 NLARGLRTHFSG--SSRFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1610)
Q Consensus 351 ~La~~L~~~f~~--~~~~llp~Ll-~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L 427 (1610)
.+-+.....+.+ ....++..++ -.+..+.+.||+.+..|+.-+.-.....-.+.++-+...++.....+|..+++.+
T Consensus 9 ~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 9 SLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred HHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333333334554 2346676666 4556777899999999998876541122345566677777777899999999999
Q ss_pred HHHHHhCChhHHHHh--------hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 428 TFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 428 ~~~l~~~~~~~l~~~--------l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
..++-.++...+... ...+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 89 ~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 89 FDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999988875544322 247888999999999999999999999987733
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.79 E-value=27 Score=45.74 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=139.5
Q ss_pred HHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCC-CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHh
Q 000369 719 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 797 (1610)
Q Consensus 719 ~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~-~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 797 (1610)
+++.+..+ ..+-+-++..++..|.++++.-... .+....+++.+... +.|.++=|==.|++.++.|...+..++
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 5566778999999999999843222 33455678888888 999999999999996666654444332
Q ss_pred hhcccHHHHHHHHHHHhcCCCCCCCCCCccccCccCcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHH
Q 000369 798 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 877 (1610)
Q Consensus 798 l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l 877 (1610)
-|.+.+..+.+-.+.+ + |. + -++.+.++ .-++++
T Consensus 804 ----l~dL~e~Y~s~k~k~~----~--------------------d~-----~-lkVGEai~------------k~~qa~ 837 (982)
T KOG4653|consen 804 ----LPDLSEEYLSEKKKLQ----T--------------------DY-----R-LKVGEAIL------------KVAQAL 837 (982)
T ss_pred ----HHHHHHHHHhcccCCC----c--------------------cc-----e-ehHHHHHH------------HHHHHh
Confidence 2222222222211110 0 00 0 00111111 123334
Q ss_pred HHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHH-hCCCcHHHHHHH
Q 000369 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC-LGDNKKHMRECT 956 (1610)
Q Consensus 878 ~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~-l~D~k~~Vr~aa 956 (1610)
++++..- +.-|+..+...+.|+....+..+|..+|.++..+......++..++-.++.. -.|....||+||
T Consensus 838 Gel~~~y--------~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 838 GELVFKY--------KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred ccHHHHH--------HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 4444321 3455666666667888888999999999999987654444555556555543 368899999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000369 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1610)
Q Consensus 957 ~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l 1036 (1610)
..-+......+| ..++|.+...+.+. -..+..+. -.|.+..+|..|+.|+
T Consensus 910 v~li~~lL~~tg-~dlLpilr~~l~Dl------~~tl~~~v-----------------------r~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPILRLLLIDL------DETLLSYV-----------------------RQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHH------HHHHHHHH-----------------------hcCchhHHHHHHHHHH
Confidence 888888887777 33445433333221 01111111 1445667888888888
Q ss_pred HHHHHHhC
Q 000369 1037 VEILRAGG 1044 (1610)
Q Consensus 1037 ~~l~~~~G 1044 (1610)
..+-..+.
T Consensus 960 eei~a~l~ 967 (982)
T KOG4653|consen 960 EEIQAALE 967 (982)
T ss_pred HHHHHHHH
Confidence 77765443
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.40 E-value=15 Score=45.69 Aligned_cols=174 Identities=20% Similarity=0.127 Sum_probs=109.1
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHH
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l 408 (1610)
.+.+.+.....+|+...|+.+..+....|.-=+.....++-.|.+++-|..+.||-.|..||..+-.-.-..=.++...+
T Consensus 95 h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l 174 (885)
T COG5218 95 HLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLL 174 (885)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 33333444456678888888888888877644566777888888888999999998888888777653111112344444
Q ss_pred HHHhh-cCChHHHHHHHHHHH-------HHHHhCChh-------HHHHhhhhH-----------HHHHHHhhcCCChHHH
Q 000369 409 KTSVK-NKVPLVRSLTLNWVT-------FCIETSSKA-------AVLKVHKDY-----------VPICMECLNDGTPEVR 462 (1610)
Q Consensus 409 ~~~l~-~Knp~vR~~~l~~L~-------~~l~~~~~~-------~l~~~l~~l-----------~p~l~~~l~D~~~~VR 462 (1610)
...++ +.+..||..++.-+. ..++++... ...++++.+ +-.+..+++|.+-.||
T Consensus 175 ~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~ 254 (885)
T COG5218 175 KDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVK 254 (885)
T ss_pred HHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHH
Confidence 45555 556788887765432 111211100 011122211 1245668999999999
Q ss_pred HHHHHHHHHHHHHhCChhHHHhhhhccHHHHHHHHHHHhc
Q 000369 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1610)
Q Consensus 463 ~aA~~al~~l~~~~g~~~~~~~l~~Ld~~~~kki~e~~~~ 502 (1610)
.++..++..-...--+-.+-.+++.||-.+++-....+++
T Consensus 255 ~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~ 294 (885)
T COG5218 255 GALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKG 294 (885)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999998776655445456678889998777654444443
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=88.03 E-value=3.5 Score=41.42 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhh--hHHHHHHH----H-h-
Q 000369 304 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLLE----K-L- 375 (1610)
Q Consensus 304 eal~~L~~l~~~~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~--~llp~Ll~----k-l- 375 (1610)
..+..|..+++.. +..+.++++.|.++|.+.|..++..|+.++..+.+.-+..|..++. .++-.++. . .
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566677766432 3457899999999999999999999999999999999998886643 23333322 1 1
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000369 376 KEKKPTVAESLTQTLQAMH 394 (1610)
Q Consensus 376 kdkk~~V~~aa~~al~ai~ 394 (1610)
.+....|++.+...+..|.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2345677777777776653
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.93 E-value=2.5 Score=52.56 Aligned_cols=107 Identities=25% Similarity=0.414 Sum_probs=81.3
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHh--hhhH
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~--~~~l 937 (1610)
..+.+.||..=.+ |.+++.. ..-. ..|++.+|++|++..+..+...||.+|..+++.+|..|... -+.|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567889987555 4444432 1111 36999999999999999999999999999999999999843 3468
Q ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHHH
Q 000369 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVPY 975 (1610)
Q Consensus 938 lp~ll~~l~D~--k~~Vr~aa~~aL~~~~~~~~l-~~ll~~ 975 (1610)
+..++...+.+ ...||+-+...|++|....+- +.-+|.
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~ 123 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPD 123 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchh
Confidence 88888888765 567999999999999887642 443343
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.91 E-value=53 Score=42.48 Aligned_cols=50 Identities=4% Similarity=0.074 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcC-ChHHHHHHHHHHHHHHH
Q 000369 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIE 432 (1610)
Q Consensus 380 ~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~K-np~vR~~~l~~L~~~l~ 432 (1610)
-+..+....|+..+... ...+++.+ |.+++.+. .++....|+.++..++.
T Consensus 267 e~~~ekvl~aiT~~ae~--~~veRF~p-iv~gl~~~e~~~l~vacmq~INal~t 317 (1102)
T KOG1924|consen 267 ENGLEKVLEAITTIAEA--KPVERFRP-IVEGLDFLEKQQLQVACMQFINALVT 317 (1102)
T ss_pred hhHHHHHHHHHHHHHhh--cchhhhhh-HHHHHhccchHHHHHHHHHHHHHhcC
Confidence 33444444555555443 33444333 44566644 67777788877765543
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=87.64 E-value=9.8 Score=39.41 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=65.8
Q ss_pred CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhh-hhHHHHHHHhhcC---CChHHHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~~~l~D---~~~~VR~aA~~al~~l~ 473 (1610)
..+..+.+..|..-++++||.+...++..|..|+.++++.....+. +.++..+.+.+.. .++.||+.+.+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4567778888888899999999999999999999999874322222 3556667777765 58899999999999999
Q ss_pred HHhCCh
Q 000369 474 KSVGMR 479 (1610)
Q Consensus 474 ~~~g~~ 479 (1610)
..++..
T Consensus 112 ~~f~~~ 117 (133)
T cd03561 112 ESFGGH 117 (133)
T ss_pred HHhcCC
Confidence 999864
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.1e+02 Score=40.71 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHHh--ChhHHHhhh--hHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHh--cC----chhhHHHHHHHHhcC
Q 000369 916 LITLGAVASAM--GPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAA--VH----LDKMVPYVTTALTDA 983 (1610)
Q Consensus 916 l~~l~~la~~l--g~~~~~~~~--~llp~ll~~l~D~k--~~Vr~aa~~aL~~~~~~--~~----l~~ll~~l~~~L~~~ 983 (1610)
++|+|.++..- +.++...+. .++|-+.+.|.... ..+.-.+...+.+++.. |. -..+++.+.+.|..+
T Consensus 509 vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 509 VECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh
Confidence 44444444432 445666664 57777777775432 23444444555554422 11 124566777777644
Q ss_pred cCChhhHHHHHHHHHHHhccCCCCCch---hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 984 KLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 984 ~~~~~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
..+-+.-..++..+.+++.+-.+...+ .+...-++..+.|+|++||+.+-.||..++.+
T Consensus 589 qeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 589 QEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred CchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 323344445555555555442221111 23334488899999999999999999988865
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.08 E-value=34 Score=40.80 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=112.5
Q ss_pred ccCChHHHHHHHHHHHHHhcC----CCCCCCChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHH
Q 000369 295 KATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLP 369 (1610)
Q Consensus 295 ~s~kW~~R~eal~~L~~l~~~----~ki~~~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~-~~~llp 369 (1610)
.+.+-.+|.+|++.|..++.. ..+.+ .+-+...+. .+++++..|+..|+.+|+..+.-=-+-=+.. =...++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 456778889999999887732 22221 233344444 8889999999999999999887422110111 112677
Q ss_pred HHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCChHhhH-----HHHHHHhhc--CChHHHHHHHHHHHHHHHhCChh-HHH
Q 000369 370 VLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKN--KVPLVRSLTLNWVTFCIETSSKA-AVL 440 (1610)
Q Consensus 370 ~Ll~klk-dkk~~V~~aa~~al~ai~~~~~~~l~~vl-----~~l~~~l~~--Knp~vR~~~l~~L~~~l~~~~~~-~l~ 440 (1610)
.|+..+. +..-.++..+--|+.+++++...+...++ ..|..++++ .+.+.|.-++.++..+++..... .+.
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777774 45557778999999999987322233333 346677887 66888888999999888765321 111
Q ss_pred HhhhhHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 441 KVHKDYVP-ICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 441 ~~l~~l~p-~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
. ....+ .+.....--+-++++++..++-.+...+..+
T Consensus 250 ~--~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 250 S--SLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred H--HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhc
Confidence 1 11122 2223334445577888877777666665433
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=87.04 E-value=8.3 Score=40.18 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=63.2
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHh-hhhHHHHHHHhhcC------CChHHHHHHHHHHHH
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND------GTPEVRDAAFSVLAA 471 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~~~l~D------~~~~VR~aA~~al~~ 471 (1610)
.+..+.+..|..-++++||.+-..++..|..|+++++...-... -+.++..+++.+.+ +++.||+...+.+..
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 45566677777788999999999999999999999987532222 25667777777753 688999999999999
Q ss_pred HHHHhCC
Q 000369 472 IAKSVGM 478 (1610)
Q Consensus 472 l~~~~g~ 478 (1610)
....++.
T Consensus 114 W~~~f~~ 120 (139)
T cd03567 114 WTLELPH 120 (139)
T ss_pred HHHHhcc
Confidence 8888874
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.61 E-value=28 Score=45.49 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=113.8
Q ss_pred HHHhhcCCC-ChhHHHHHHHHHHHHHHHcccc-CCCCChhhHHHHHHhcccc-ccHhHHHHHHHHHHHHHHHhChhHHHh
Q 000369 857 TLVKSLESP-DWKVRLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKS 933 (1610)
Q Consensus 857 ~ll~~l~d~-~Wk~R~eale~l~~ll~~a~~~-i~~~~~~eL~~~L~~~L~D-sn~~v~~~al~~l~~la~~lg~~~~~~ 933 (1610)
.|+.++... +--...+++.++.+++.=.+.. +..-....++++|...|++ .|..+...||+++.+|+.++.+...-.
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 567777655 6666778888888777532221 1111246799999999975 689999999999999999998887654
Q ss_pred hh-hHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhcc
Q 000369 934 SK-GVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1610)
Q Consensus 934 ~~-~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~l--------~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~ 1003 (1610)
+. ..+|.++.+|-. .--.|.+-+.+||..+.+.-+- ..++- .++.+.. +. .|. ++...+.+-.+
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Ls-ylDFFSi---~a-QR~-AlaiaaN~Cks 324 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLS-YLDFFSI---HA-QRV-ALAIAANCCKS 324 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHH-HHHHHHH---HH-HHH-HHHHHHHHHhc
Confidence 44 478888887754 4556888888888888765431 11111 1222221 12 243 34444444444
Q ss_pred CCC-CCchhhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 000369 1004 LSG-FPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1610)
Q Consensus 1004 ~~~-~~~~~~ll~p-l~~~L~D~~~dVR~aA~~~l~~l~~~~ 1043 (1610)
++. ..++..-..| +...|...+..+-+.+.-|+-.+...+
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 443 3333333344 555666666667777777877766544
|
|
| >KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.54 E-value=6.1 Score=47.16 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=128.3
Q ss_pred ccCcHHHHHHhhcCChHHHHHHHHHHHHHHHhccccchh---HHHHHHHh-hcCCCCCccHHHHHHHHHHHHHHHHHHc-
Q 000369 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS---VEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATA- 674 (1610)
Q Consensus 600 ~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~~~~~~~~~~~---~~~lv~~l-~~~p~~~DsN~~V~~~~l~~l~~l~~~~- 674 (1610)
+.+++-+.+....+.|-.|..++..+.+.+..+.-.... .+.+-..+ .....++|-...+.++.|+.+.-++..+
T Consensus 392 dslddileaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahli 471 (666)
T KOG4825|consen 392 DSLDDILEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLI 471 (666)
T ss_pred hhhhhHHHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566677888899999999998888776553211111 11110000 0000145666678888888888776654
Q ss_pred --CCCch----hhHHHHHHHHHhhhccc--hhhHHHHH---HHHHHHhhhChhhHHHHHHhhhhcCCCHhHHHHHHHHHH
Q 000369 675 --TKFPK----KCVVLCLLGISERVADI--KTRAHAMK---CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMV 743 (1610)
Q Consensus 675 --~~~~~----~~~~~il~~LveKlgd~--K~r~~a~~---~L~~l~e~~~~~~v~~~l~~~l~~~knpKv~~~~l~~l~ 743 (1610)
..|+. .|+..-++.+.-.-||. +++-.|.+ .|-.+.+.-..+.|-+.|...+..+|.|-+-..-...|.
T Consensus 472 kehkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLa 551 (666)
T KOG4825|consen 472 KEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLA 551 (666)
T ss_pred chhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHH
Confidence 23443 35555556666666764 45555554 444455666667777777777767888887777677777
Q ss_pred HHHHHhCCC--CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHH--------HHHHHHHHH
Q 000369 744 SAVEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA--------LLSALDAEY 813 (1610)
Q Consensus 744 ~~i~~fg~~--~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~--------ll~~L~~ef 813 (1610)
.++...|.. ++-......+-... ..+.--++|.+|...++.+|+... .+...++|.|. +.+.+-+-|
T Consensus 552 rllkdlgkGragfiediakkfgVpa-eehglndkreaafaiicdmtrdhQ--arsIgedLmpddskngriilvksefEgF 628 (666)
T KOG4825|consen 552 RLLKDLGKGRAGFIEDIAKKFGVPA-EEHGLNDKREAAFAIICDMTRDHQ--ARSIGEDLMPDDSKNGRIILVKSEFEGF 628 (666)
T ss_pred HHHHhcCCCccchhHHHHHHhCCCc-cccchhHHHHhHhhhhhhhcccHH--HHHHHhhcCcccccCCceEEeHHHhhhh
Confidence 888877653 22111122222333 566667899999999999997543 33334444442 334444555
Q ss_pred hcCCCC
Q 000369 814 EKNPFE 819 (1610)
Q Consensus 814 ~k~~~~ 819 (1610)
.++.+.
T Consensus 629 AkiDgr 634 (666)
T KOG4825|consen 629 AKIDGR 634 (666)
T ss_pred hhccCC
Confidence 565543
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.3e+02 Score=39.54 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=58.1
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHhhh----ChhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCCCCC-hHhHH
Q 000369 686 LLGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLI 760 (1610)
Q Consensus 686 l~~LveKlgd~K~r~~a~~~L~~l~e~~----~~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~~l~-~k~li 760 (1610)
+..|.+-+-|--....+...|..+..-. .|..-...++..+ --.|..||.++...++++. ..... ...+.
T Consensus 431 L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~ 505 (865)
T KOG1078|consen 431 LEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSIL 505 (865)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHH
Confidence 3344444444444445555555554422 2333334444432 3468899999998776655 33222 34566
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 761 DFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 761 ~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
-.++.+ +.|++.+||+.|.-.+..+-
T Consensus 506 vllkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 506 VLLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 666775 99999999999999888776
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=85.65 E-value=1.4e+02 Score=39.84 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCcCC
Q 000369 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD-NKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLG 986 (1610)
Q Consensus 910 ~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~--l~~ll~~l~~~L~~~~~~ 986 (1610)
.|+..+.-+++.|+-+-+ ..++.++|.+.+-|.- ....||....-++..+..+.+ .+.-+|.|...|.++ +
T Consensus 946 ~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp--~ 1019 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP--S 1019 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--h
Confidence 466777777877776644 4567778888877754 445688888888888877664 688899999999988 6
Q ss_pred hhhHHHHHHHHHHHhccCCCCCch-hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000369 987 AEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1610)
Q Consensus 987 ~~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~~ 1042 (1610)
+.+|..++..|+++++.--- -+ -.+..-++..|-|.+++||.-|..+++.+...
T Consensus 1020 ~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 89999999999998764211 11 23444466678899999999999999988764
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.53 E-value=14 Score=44.52 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=82.1
Q ss_pred HHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CChHh
Q 000369 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVD 403 (1610)
Q Consensus 329 ~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~-----~~l~~ 403 (1610)
.|...++.-|.+|+..|+.-+..+-..--.....+.-.+++.+.+..-|.-..||++....++.++-..| ....-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 3344455667777777777776665552222334566778888888889999999999999999665422 22345
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHH
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1610)
Q Consensus 404 vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l 439 (1610)
+++.+..+|.|-.|.+|..++.||..++..+++...
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 678888999999999999999999999999977543
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=85.44 E-value=6.2 Score=42.38 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=68.0
Q ss_pred hhhhhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHh--cCCChHhhHHHHHHHhhcCChHHHH
Q 000369 362 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1610)
Q Consensus 362 ~~~~~llp~Ll~klkdkk------------------~~V~~aa~~al~ai~~~--~~~~l~~vl~~l~~~l~~Knp~vR~ 421 (1610)
++...++|.++.-++-++ -.+|.++-+|+.+++.. ....+..+++.+..|+.+ ...+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 456677777776655443 36899999999999987 224567889999999999 999999
Q ss_pred HHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh
Q 000369 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1610)
Q Consensus 422 ~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l 454 (1610)
-+...|.++....+. .+...++.+++.+.+.|
T Consensus 84 L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHh
Confidence 999999998776544 44455788888888777
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG3961 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.12 E-value=4.3 Score=44.24 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=91.3
Q ss_pred cchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHH---hChhH
Q 000369 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 930 (1610)
Q Consensus 854 l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~---lg~~~ 930 (1610)
+.+.|.+.|.+.++--|.-|-+.+.+++.....+|.|-. .+|+..|+.-|.-.|..|...+|++|+.|... .|..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 345788999999999999999999998876667787764 89999999999999999999999999999864 57889
Q ss_pred HHhhhhHHHHHHH--Hh----C-----CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000369 931 EKSSKGVLSDILK--CL----G-----DNKKHMRECTLTVLDAWLAAVHLDKM 972 (1610)
Q Consensus 931 ~~~~~~llp~ll~--~l----~-----D~k~~Vr~aa~~aL~~~~~~~~l~~l 972 (1610)
-||-++++|.+-. .. + |++..+-+-...+|..+-.+-|.+.+
T Consensus 194 VPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAf 246 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAF 246 (262)
T ss_pred hhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccce
Confidence 9999999997632 11 1 34555666666666666655554443
|
|
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
Probab=85.03 E-value=3.1 Score=46.16 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHHHHHHhChhHHHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcCChh
Q 000369 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 988 (1610)
Q Consensus 909 ~~v~~~al~~l~~la~~lg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~ll~~l~~~L~~~~~~~~ 988 (1610)
.......+++++.+...+|....+++..++-.+-+.-.+..-..|+.+..|+.+.++.+|++.++..+-=.+.+......
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~ 93 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc
Confidence 34556788999999999999888888888888877777777889999999999999999999887643322321111233
Q ss_pred hHHHHHHHHHHHhccCCCCCchhhhHHHHHHhc
Q 000369 989 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021 (1610)
Q Consensus 989 ~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1021 (1610)
.|.-++-.|.+.+.+. ....+.+.+.|+...+
T Consensus 94 ~raWLLPlLr~~i~~~-~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNA-SLSFFVEEFLPLARRL 125 (198)
T ss_pred ccchhHHHHHHhccCC-ChHHHHHHHHHHHHHH
Confidence 4665565565544332 1234566666655543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.2e+02 Score=38.23 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=46.8
Q ss_pred hhhHHHHHHhhhhcCCCHhHHHHHHHHHHHHHHHhCCC---CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Q 000369 715 PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 715 ~~~v~~~l~~~l~~~knpKv~~~~l~~l~~~i~~fg~~---~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly 787 (1610)
|..-+.+++..+ --.|.-||++++..|++ ||.. .+....+...++.+ ++|.+.+||+-|.-++..|-
T Consensus 485 P~~yvrhIyNR~-iLEN~ivRsaAv~aLsk----f~ln~~d~~~~~sv~~~lkRc-lnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 PGKYVRHIYNRL-ILENNIVRSAAVQALSK----FALNISDVVSPQSVENALKRC-LNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cchHHHHHHHHH-HHhhhHHHHHHHHHHHH----hccCccccccHHHHHHHHHHH-hhcccHHHHHHHHHHHHhhh
Confidence 334445555553 35677889999887654 5543 23345677777775 99999999999998887775
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=84.48 E-value=5.2 Score=40.50 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhh---HHHHHHHhh--------cCCChHHHHHHHH
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD---YVPICMECL--------NDGTPEVRDAAFS 467 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~---l~p~l~~~l--------~D~~~~VR~aA~~ 467 (1610)
....++++.|..-|++++|.||.-+|..|..++..-+. .+...+.. ++..+...- +|....||++|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 34567888888889999999999999999988876543 33322222 333333322 4567799999999
Q ss_pred HHHHHH
Q 000369 468 VLAAIA 473 (1610)
Q Consensus 468 al~~l~ 473 (1610)
++..+.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=84.18 E-value=4.1 Score=39.23 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHh
Q 000369 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1610)
Q Consensus 405 l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~ 484 (1610)
++.++.-+.+..+.+|...+..|.++++.... .....+.++..+...+.|.++=|=-.|.++|..++...+++.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 44555666788899999999999999987651 1123478889999999999999999999999999999998776555
Q ss_pred hh
Q 000369 485 IE 486 (1610)
Q Consensus 485 l~ 486 (1610)
++
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 54
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.16 E-value=10 Score=49.35 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=117.8
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHH--ccccCCCCChhhHHHHHHhccccccHhHHHHHHHHHHHHHHHhChhHHHhh
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~--a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~l~~la~~lg~~~~~~~ 934 (1610)
+.+..+.|+.--+|..|+..+..+++. ....+.+ ..++.+....|.|-+.-|...|++.+..++.. |-
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~---ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG---EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH---HHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc
Confidence 556677888888999999999999983 2122222 45788889999999999998888877777665 55
Q ss_pred hhHHHHHHHHhCCCcH-H---HHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccC
Q 000369 935 KGVLSDILKCLGDNKK-H---MRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1610)
Q Consensus 935 ~~llp~ll~~l~D~k~-~---Vr~aa~~aL~~~~~~~~------l~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~ 1004 (1610)
+.++|.+.+-+...|+ . .|=-+-+++..+++..| .+.++..+..+..++ .-.-|...+..+..+....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHH
Confidence 6788888875543332 2 23333366666666665 233333344444433 2334877777776655443
Q ss_pred CC--CCchhhhHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhChHH
Q 000369 1005 SG--FPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQET 1047 (1610)
Q Consensus 1005 ~~--~~~~~~ll~pl~~~-L~D~~~dVR~aA~~~l~~l~~~~G~~~ 1047 (1610)
.. +..+.+.+..++.. -.|...-||.+|...+..+....|++.
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 32 22333444444443 379999999999999999999999653
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.80 E-value=17 Score=50.72 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=134.1
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000369 291 WEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1610)
Q Consensus 291 ~~~l~s~kW~~R~eal~~L~~l~~~~ki~~--~~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~ll 368 (1610)
..++.=++=+.|..||.+|..+++...... +-++.....+.+++.|-+..|+....+.+..+..++++...||.+.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 344444666788889999999875322221 225667778888889999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--------CC-ChHhhHHHH----------------HHHhhcCChHHHHHH
Q 000369 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--------CL-NLVDVVEDV----------------KTSVKNKVPLVRSLT 423 (1610)
Q Consensus 369 p~Ll~klkdkk~~V~~aa~~al~ai~~~~--------~~-~l~~vl~~l----------------~~~l~~Knp~vR~~~ 423 (1610)
|..+-..-|.-..|..+|.+.+...+.-. |. .+-.+..++ .+.++.|-+++...+
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99999999999899988888887665420 10 011111121 122356678888888
Q ss_pred HHHHHHHHHhCChh-HHH---Hhhhh--HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 424 LNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 424 l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
+..+...+...+.. .+. ...+. --..+-+.+.+..+.+|.+..+++-.+.+.+...
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 88888888554321 111 11121 1245667889999999999999998888776544
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.79 E-value=16 Score=49.36 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=90.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhc
Q 000369 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN 414 (1610)
Q Consensus 336 D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~kl-kdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~ 414 (1610)
-+|+.+...|--+++.+.-- .. .|...-+|.++.-+ +-+.+.||..+..++.-+.-...+-++..-+.+..-+.+
T Consensus 934 ~sdp~Lq~AAtLaL~klM~i-Sa---~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCI-SA---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhh-hH---HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence 44566677776666654322 22 34555566666666 467788887666666555432134466777888899999
Q ss_pred CChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000369 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 415 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~ 475 (1610)
-++.||..|+..|..++-+- ..+ .|-.++.+..|+.|+++++|+-|..-|-.+.+.
T Consensus 1010 ~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 99999999999999887642 111 255678899999999999999999766665543
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=83.77 E-value=21 Score=44.51 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=104.5
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHccccCCCCChhhHHHHHHhccccc-cHhHHHHHHHHHH---HHHHHh-C-h--hHH
Q 000369 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLG---AVASAM-G-P--AVE 931 (1610)
Q Consensus 860 ~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds-n~~v~~~al~~l~---~la~~l-g-~--~~~ 931 (1610)
+.+-+.+-..|.+||+.|+. ...++.|++.+...+.+. ..+|++.-+..|. .|+.++ . + .++
T Consensus 214 ~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 34556889999999998862 122588888888888664 3444444433333 333443 2 2 267
Q ss_pred HhhhhHHHHHHHHhC----------CCcHHHHHHHHHHHHHHHHhcC--ch----hhHHHHHHHHhcCcCChhhHHHHHH
Q 000369 932 KSSKGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVH--LD----KMVPYVTTALTDAKLGAEGRKDLFD 995 (1610)
Q Consensus 932 ~~~~~llp~ll~~l~----------D~k~~Vr~aa~~aL~~~~~~~~--l~----~ll~~l~~~L~~~~~~~~~R~~~l~ 995 (1610)
+|+..++|.++.|+- |+.=.+|+-|...+..++.+.+ +. +++..+..++.+.+-.+....+++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 999999999999875 3344599999999999988765 22 3444555555544324556677777
Q ss_pred HHHHHhccCCC---CCchhhhHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHhCh
Q 000369 996 WLSKQLTGLSG---FPDAAHLLKPASIAMTDK---SSDVRKAAEACIVEILRAGGQ 1045 (1610)
Q Consensus 996 ~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~---~~dVR~aA~~~l~~l~~~~G~ 1045 (1610)
.|..+-...-. .+.+.....-+-..+.+. +.-.+..|..+...+..+...
T Consensus 364 gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 364 GLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77653221111 122222222222233332 333466677777777666554
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=83.73 E-value=9.8 Score=46.58 Aligned_cols=123 Identities=12% Similarity=0.177 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc---CcHHHHHHHHHHHHHHHHhc------CC------ChHhh--
Q 000369 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE---KKPTVAESLTQTLQAMHKAG------CL------NLVDV-- 404 (1610)
Q Consensus 342 ~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkd---kk~~V~~aa~~al~ai~~~~------~~------~l~~v-- 404 (1610)
+..|+.++..|++..++...+.+..++..++..... .+..-.++|.-.+.++...+ .+ .+.++
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 455555555555554444444444444445543322 12223344444444444331 01 12222
Q ss_pred ---HHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000369 405 ---VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1610)
Q Consensus 405 ---l~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al 469 (1610)
+|++. .-.++.|-+|..++.++..+-...++.. +..++|.+..+|.+++.-|+..|+-|+
T Consensus 308 ~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 308 QHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23333 2237789999999999998766665554 477899999999999999999998764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.67 E-value=4.6 Score=49.70 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=67.1
Q ss_pred ccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHh
Q 000369 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1610)
Q Consensus 334 l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkd-kk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l 412 (1610)
++|.|--|++.|.-++|.++-.= ..+++..++.+.+ .+..||-...-+|...+.. ++....++.+..-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 45666666666666665543211 2355566666644 3666776666666555543 44444444444445
Q ss_pred hcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChH
Q 000369 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 460 (1610)
Q Consensus 413 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~ 460 (1610)
.+.|--||+.++..+..++-.+.+. +.+..+.|.+.+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 5777777777777777666655543 4444466666666666666554
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=83.50 E-value=3.6 Score=45.30 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHHHHHhCCCCcChhhHHHhhhhhhCCCCHHHHHHHHHHHHHHHHhhC
Q 000369 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 200 (1610)
Q Consensus 129 v~~~L~~~l~~KnpKv~~~~l~~l~~~l~~fG~~~~~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~lG 200 (1610)
-+..+++...+.+++++..|+..+..+++ +|. ++|+..+|.+..+..|+|+.+|+.|..+..+++.--+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGL--vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-QGL--VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCC--CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 35566778889999999999999988886 676 6899999999999999999999999999988875553
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.37 E-value=14 Score=51.57 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=113.5
Q ss_pred hhHHHHHhhccccHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhccCCcHHHHHHHHhHHHHHHHHHhhcCCCCC
Q 000369 1171 FREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLT 1250 (1610)
Q Consensus 1171 ~~~~l~~~l~s~d~~~r~~~l~~L~~~l~~~~~~~~~~lDlllk~~~~r~~dtn~~v~~~~L~~l~~l~~~l~~~~y~l~ 1250 (1610)
+=+.|...|.+.+-..|++|+..+-.++.....-+...-|-++.-|..||+|-...|=+++++.....+-. + =+
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~----~--~~ 333 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN----N--PS 333 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc----C--ch
Confidence 33478888888899999999999999887765444443445667777899999999999999999876543 1 23
Q ss_pred HHHHHhhhHHHHHhhCCChHHHHHHHHHH---HHHHHhcCCccccHHHHHhcccCCchhhHHHHHHHHHHHHHh
Q 000369 1251 ESEAAVFLPCLVEKSGHNIEKVREKMREL---TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321 (1610)
Q Consensus 1251 ~~ea~~~lp~l~~K~Gd~k~~vr~~v~~i---l~~~~~~~~~~kv~~~l~~gl~sKn~r~r~e~l~~l~~li~~ 1321 (1610)
-.++...+-++-...-|..+.+|..|--. ...+...|.+. ++.++.|-+.-|-+++|.+|+.-|..+.++
T Consensus 334 ~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 334 IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34678888888888889888888665433 24455667777 999999999999999999999999999987
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.14 E-value=18 Score=41.94 Aligned_cols=169 Identities=13% Similarity=0.127 Sum_probs=104.9
Q ss_pred hhhhccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHcc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000369 291 WEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1610)
Q Consensus 291 ~~~l~s~kW~~R~eal~~L~~l~~~~ki~~--~~~~~l~~~L~~~l~-D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~l 367 (1610)
...+.+.+-+.|..|+..|..+.....-.. ..| +-..+...+. ..|+.+...+++++..|. ...++...+...
T Consensus 60 ~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~ 135 (254)
T PF04826_consen 60 GSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANY 135 (254)
T ss_pred HHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhh
Confidence 334566777888889999887763211100 122 2233333444 568888888999999885 334445556667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh-----hHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhCCh-----
Q 000369 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK----- 436 (1610)
Q Consensus 368 lp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~-----vl~~l~~~l~~K-np~vR~~~l~~L~~~l~~~~~----- 436 (1610)
+|.++..+......++..+..+|..+..+ ..-..+ ++..++.-++.+ +..+-..++.|+.++-....+
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~ 214 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVF 214 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccccee
Confidence 88888888777777887777777777654 111112 223344444443 456777888888887554432
Q ss_pred -------hHHH---HhhhhHHHHHHHhhcCCChHHHHH
Q 000369 437 -------AAVL---KVHKDYVPICMECLNDGTPEVRDA 464 (1610)
Q Consensus 437 -------~~l~---~~l~~l~p~l~~~l~D~~~~VR~a 464 (1610)
..+. .-.+.+...+.....++|++||+.
T Consensus 215 ~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 215 VQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred ccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1121 122567778888889999999875
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=83.03 E-value=12 Score=39.06 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=63.3
Q ss_pred CChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHHHHHhhcCCChH----HHHHHHHHHHHHH
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPE----VRDAAFSVLAAIA 473 (1610)
Q Consensus 399 ~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~~~l~D~~~~----VR~aA~~al~~l~ 473 (1610)
.+..+++..|..-++|+||.+...++..|..|+.+++...... .-+.++..+.+++.++... ||+.+.+.+....
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4455666777778899999999999999999999987543222 1255777777766544432 9999999999999
Q ss_pred HHhCChhHHHhhh
Q 000369 474 KSVGMRPLERSIE 486 (1610)
Q Consensus 474 ~~~g~~~~~~~l~ 486 (1610)
..++..+-.+++.
T Consensus 118 ~~f~~~~~~~~i~ 130 (140)
T PF00790_consen 118 EAFKSDPELSLIQ 130 (140)
T ss_dssp HHTTTSTTGHHHH
T ss_pred HHHCCCCCchHHH
Confidence 9996543233333
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.95 E-value=16 Score=40.36 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=82.3
Q ss_pred hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHH--
Q 000369 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-- 440 (1610)
Q Consensus 363 ~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~-- 440 (1610)
.+..+++.+++.+-.++..||..+...+..+...+-+++..++|.+..-..+.|+.+|..+...+....++++.-...
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356678889999999999999999999999998877888999999998888999999999999999988887542221
Q ss_pred -HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000369 441 -KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1610)
Q Consensus 441 -~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g 477 (1610)
+.++.....-..+-.|.....+......++.++..++
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 1222222222233445444333335556666666655
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=82.81 E-value=17 Score=37.68 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=64.8
Q ss_pred CCChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHH-hhhhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHH
Q 000369 398 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAK 474 (1610)
Q Consensus 398 ~~~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~~~l~D~~~--~VR~aA~~al~~l~~ 474 (1610)
..+..+.+..|..-++++||.+-..++..|..|+.+++...-.. .-+.++..+.+.+.++.. .||+...+.+.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 35567778888888999999999999999999999998653222 235677788888777554 499999999999999
Q ss_pred HhCCh
Q 000369 475 SVGMR 479 (1610)
Q Consensus 475 ~~g~~ 479 (1610)
.+++.
T Consensus 112 ~f~~~ 116 (133)
T smart00288 112 AFKND 116 (133)
T ss_pred HHcCC
Confidence 88754
|
Unpublished observations. Domain of unknown function. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=82.51 E-value=16 Score=43.02 Aligned_cols=137 Identities=13% Similarity=0.210 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhc----ch--hhhhhHHHHHHHHhc--------cCcHHHHHHHH
Q 000369 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESLT 387 (1610)
Q Consensus 322 ~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~----f~--~~~~~llp~Ll~klk--------dkk~~V~~aa~ 387 (1610)
.+.-++..+...+.|....+...+|+|+..+....... +. .+...+-..+...+- +....+...+-
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45678888889999999999999999999999866533 23 447777778887777 77778888999
Q ss_pred HHHHHHHHhc--------CCChHhhHHH-HHHHhh--cC--ChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhh
Q 000369 388 QTLQAMHKAG--------CLNLVDVVED-VKTSVK--NK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1610)
Q Consensus 388 ~al~ai~~~~--------~~~l~~vl~~-l~~~l~--~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l 454 (1610)
.|+..++... ...+.+++-+ |+..+. .+ .+.++...++.+..++...+.. ..++++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHh
Confidence 9999986530 1224455543 666665 23 5899999999999999886654 4478999999999999
Q ss_pred cCCCh
Q 000369 455 NDGTP 459 (1610)
Q Consensus 455 ~D~~~ 459 (1610)
.+++.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88763
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.41 E-value=3.6e+02 Score=41.87 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCChHhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhhChhHHHhhhcccHHHHHHHHHHHhcCCCCCCCCCCccccCcc
Q 000369 753 HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1610)
Q Consensus 753 ~l~~k~li~~l~~~gl~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~ 832 (1610)
.+|..-+++.+... +.+.|..+|.++..++..++...-.. |++ +.+..
T Consensus 979 ~lD~~i~ldal~~~-l~~~~~~~~~~g~~~l~~i~~~~~~~----l~~-----------------------~~~~~---- 1026 (3550)
T KOG0889|consen 979 MLDPSTFLDALVES-LSHENSEMRPAGVRALKVIFSTSTLI----LGS-----------------------PERAF---- 1026 (3550)
T ss_pred ccCHHHHHHHHHHH-HhccchhhhhhHHHHHHHHHHHHHHh----hcC-----------------------cchhh----
Confidence 45667788888886 99999999999999988776433211 110 00000
Q ss_pred CcCCCCCCCCCCCCccccccccchHHHhhcCCCChhHHHHHHHHHHHHHHHccccCCC-CChhhHHHHHHhccccccHhH
Q 000369 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNL 911 (1610)
Q Consensus 833 ~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eale~l~~ll~~a~~~i~~-~~~~eL~~~L~~~L~Dsn~~v 911 (1610)
...+...|-+.++..+-++.|..|..+...+.-++..-+ ...- ..+.+++.++.-++.|.-..+
T Consensus 1027 --------------~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~e~ 1091 (3550)
T KOG0889|consen 1027 --------------KLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTESEV 1091 (3550)
T ss_pred --------------ccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCcccc
Confidence 011233344455556666777777776666665554321 1100 013445555554444332211
Q ss_pred HH----HHHHHHHHHHH----HhChh-HH-HhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000369 912 VM----ATLITLGAVAS----AMGPA-VE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 912 ~~----~al~~l~~la~----~lg~~-~~-~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.. .+-.++-.+-. ..+.. -. .....++..+..-+-+.+..||+.+..+|..+.+..|
T Consensus 1092 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1092 SSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSG 1158 (3550)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC
Confidence 11 22222222222 11111 11 2345567777777888888999999999999998876
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.99 E-value=7.5 Score=49.20 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=98.0
Q ss_pred hccccccHhHHHHHHHHHHHHHHHhChhH-----HHhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---c
Q 000369 902 GRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH---L 969 (1610)
Q Consensus 902 ~~L~Dsn~~v~~~al~~l~~la~~lg~~~-----~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~----~~---l 969 (1610)
.-|.-.|.+|+..|+.++=.+.+--|++. +.....=+--+.+.|.|.-+.||..|...+..+... ++ +
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34567899999999998888888777664 344444455677889999999999998887665533 33 3
Q ss_pred hhhHHHHHHHHhcCcCChhhHHHHHHHHHHHhccCCCCCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000369 970 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 970 ~~ll~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
..++..|.+.+..+. ...+|..+++.|...+..-...+-+..+++.+-..|.|.+..||-|+...+..+-.
T Consensus 261 ~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 445556666665443 45789999999887665432222233344445568899999999999999877653
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=81.36 E-value=11 Score=37.53 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=58.8
Q ss_pred cCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhhhhcc
Q 000369 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD 489 (1610)
Q Consensus 414 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~~~~~~l~~Ld 489 (1610)
++...-|..++.-+..+++ .....+....+.++-.+..+++.. ++|+.|.+|-..|.+.++++.+.++++..-
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3556889999999999988 444456566677777777777766 999999999999999999998888887654
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=81.34 E-value=30 Score=44.24 Aligned_cols=126 Identities=15% Similarity=0.205 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHh
Q 000369 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 403 (1610)
Q Consensus 324 ~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~ 403 (1610)
.+-+.++..++.|..+.|+..|++-|-.+++.-. .|+.-+.-.|...+....+..++++..+|..++.. ....
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d~k~ 130 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ---DPKG 130 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc---CcHH
Confidence 4677888899999999999999999999887643 35566666677777777888899999999999985 3344
Q ss_pred hHHHHHHHhh---cCChHHHHHHHHHHHHHHHhCChhHHH--H-hhhhHHHHHHHhhcC
Q 000369 404 VVEDVKTSVK---NKVPLVRSLTLNWVTFCIETSSKAAVL--K-VHKDYVPICMECLND 456 (1610)
Q Consensus 404 vl~~l~~~l~---~Knp~vR~~~l~~L~~~l~~~~~~~l~--~-~l~~l~p~l~~~l~D 456 (1610)
.+..++..+. +....+|..++.||..-+...+...+. + .-.-++..+.+.|.|
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4444444443 556789999999998777655433222 1 124466777888888
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=80.76 E-value=36 Score=36.66 Aligned_cols=134 Identities=14% Similarity=0.202 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCC
Q 000369 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCL 399 (1610)
Q Consensus 322 ~~~~l~~~L~~~l~D~n~~v~~~A~~~i~~La~~L-~~~f~~~~~~llp~Ll~klkdk-k~~V~~aa~~al~ai~~~~~~ 399 (1610)
..+.++..+.+.+.+.+..-+..++..++.++..- ..-|..+....+..++..+... ...+.+++..++..++.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~--- 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL--- 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---
Confidence 45666777777778777777888999998888876 4456677788888888887653 345566666666666654
Q ss_pred ChHhhHHHHHHHhhcCChHHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000369 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1610)
Q Consensus 400 ~l~~vl~~l~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~~ 479 (1610)
+.++..-.|+.+ .+.++.+++.+.+.+++ ..+.+.+.+++..++..++.-
T Consensus 99 ------------~~~~p~l~Rei~----------------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 99 ------------IRGKPTLTREIA----------------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ------------hcCCCchHHHHh----------------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 122222222221 12346667777777776 777888999999999888743
Q ss_pred hHHHhhhhcc
Q 000369 480 PLERSIEKLD 489 (1610)
Q Consensus 480 ~~~~~l~~Ld 489 (1610)
+.||..++.
T Consensus 149 -~rp~~~ki~ 157 (165)
T PF08167_consen 149 -FRPFANKIE 157 (165)
T ss_pred -ccchHHHHH
Confidence 566665554
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.74 E-value=23 Score=45.65 Aligned_cols=106 Identities=10% Similarity=0.175 Sum_probs=62.4
Q ss_pred HhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHH-HhcCcCChhhHHHHHHHHHHHhccCCC
Q 000369 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTA-LTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1610)
Q Consensus 932 ~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~----~ll~~l~~~-L~~~~~~~~~R~~~l~~L~~~l~~~~~ 1006 (1610)
.+...++|-|...+.|....+++.+...+.++++.+.+. .++|.|... +++. +..+|..++..+..+++.+.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt--~~~vkvn~L~c~~~l~q~lD- 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT--NLYVKVNVLPCLAGLIQRLD- 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc--chHHHHHHHHHHHHHHHHHH-
Confidence 344567777777777777777777777777777766532 234433322 1222 45567777777766664432
Q ss_pred CCchhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000369 1007 FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1610)
Q Consensus 1007 ~~~~~~ll~pl~~~L~D~~~dVR~aA~~~l~~l~ 1040 (1610)
...+.+.+.|+..|+.-+++++--.-..++..++
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 2234566667777776666666655555555443
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=80.71 E-value=18 Score=46.19 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCChHhhHHHHHHHhhcCCh
Q 000369 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417 (1610)
Q Consensus 338 n~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~Ll~klkdkk~~V~~aa~~al~ai~~~~~~~l~~vl~~l~~~l~~Knp 417 (1610)
+...-..|.+.|... -+.|......-+-.+++.+.|....||..+...|-.+++.....+..+.+.|..-|+...+
T Consensus 35 ~~k~K~Laaq~I~kf----fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKF----FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHH----HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccH
Confidence 355566676666555 4578889999999999999999999999998888888875335678888888889998888
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000369 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 418 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~~~l~D~~~~VR~aA~~al~~l~~~~g~ 478 (1610)
.....+=+.|..++...++..+...+..+... ...+..||+.+.+.+..-+.-++.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcH
Confidence 87777777777777776666664444444322 245678999988877654444443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs) | Back alignment and domain information |
|---|
Probab=80.70 E-value=14 Score=39.29 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=57.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHcc--ccCCCCChhhHHHHHHhcc--------ccccH---hH------HHHHHH
Q 000369 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSNK---NL------VMATLI 917 (1610)
Q Consensus 857 ~ll~~l~d~~Wk~R~eale~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L--------~Dsn~---~v------~~~al~ 917 (1610)
+.+..|++.+=++|..|++.|..++.... ..+....|+.++.+|...+ ...+. .. ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46778899999999999999999997532 4455556888888886643 11111 11 122233
Q ss_pred HHHHHHHHhChhHH-HhhhhHHHHHHHHhCCCc
Q 000369 918 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 949 (1610)
Q Consensus 918 ~l~~la~~lg~~~~-~~~~~llp~ll~~l~D~k 949 (1610)
++..++....+.+. ..+..++..+++.+.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 33333333222332 456677777777777666
|
Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1610 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 3e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 1e-09 | ||
| 4ffb_C | 278 | A Tog:alphaBETA-Tubulin Complex Structure Reveals C | 4e-06 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 4e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 278 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 243 bits (620), Expect = 9e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1133 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1192
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1193 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1312
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1373 LTDAQKSMLDDRFKW 1387
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 1e-20
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 622 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 676
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 677 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 734
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 795 KGFLADVKPALLSALDAEYEK 815
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 91.8 bits (227), Expect = 2e-20
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 6/225 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
+S+ + LL K+ +L HK++K A L L D+ + L
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAV 116
++N K L+ ++ + K + + +
Sbjct: 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155
Query: 117 FMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176
+ ++ ++ A+K+K A+ + V+ ++ G + + K +
Sbjct: 156 VNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215
Query: 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
+D NVR ++ + + ++ G K +M D K +E
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEGDQMWK--AAGRMADKDKSLVE 258
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 2e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 907 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1020
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1021 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 2e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 282 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 340
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 341 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 456
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 457 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 1e-59
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALC-----DSITDPKDNRIRELGP 55
MS EE+ + LP E+RL +K WK R EA +L L D D
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPT 58
Query: 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK------EVCDAIAAKCLTG-RPK 108
LF + + DSN Q++A+ AL + + A + + + A + K LT R
Sbjct: 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRAT 118
Query: 109 TVEKAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK 167
T ++ + + L+ ++ ++++ + K+ K + A + +++ ++ FG + +
Sbjct: 119 TKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178
Query: 168 ----RILKMLPELFDHQDQNVRASSKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELE 221
+LK +P+L H D+NVR+ + L +E+ + G D ++ ILF+K++ K+L
Sbjct: 179 TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238
Query: 222 VELVNVSGTARPTRKIRAEQDKELGQELISED 253
V ++ + + +EL ++ E+
Sbjct: 239 KLFAKVGDEPSSSKMLFEWEKRELEKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 4e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 639
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 640 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 689
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 690 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 747 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 799
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 829
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 3e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1175 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1229
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1230 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1286
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1287 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1341
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1342 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1397
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1398 GKPGEARAALRRSVRENGSDIAEQ 1421
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 7e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 298 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 349
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 350 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 462
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 498
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 5e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 913
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 914 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 966
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 967 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1021
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1022 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1075
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1076 SMGPTSKSSSKVPKSASNGVSKHGNR 1101
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 5e-57
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 326
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 327 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 383
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 384 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 436
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 437 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 496 LSEMI 500
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 1e-20
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 900
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 901 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 957
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 958 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1011 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1064
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1065 ERIK 1068
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 2e-16
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1218
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1278
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1279 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1331
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1332 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1386
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1387 WKVREMEKK 1395
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 3e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 656
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 657 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 712
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 713 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 761
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 815
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 9e-08
Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 12 KKLP--WEDRLLHKNWKVRNEA----NIDLAALCDSITDPKDNRIRELGPLFKKTVADSN 65
KLP +++R+ WK R EA + + + N LG D+N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 66 APVQDKALDALIAYLKA--ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL 123
A ++ + Y V + + +P +E + + +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 124 -------EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILK 171
+ L + + +K+K + + + ++ E ++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 172 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
++ ++ + +R L + G + L E + + +K++E
Sbjct: 195 IVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 3e-50
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 329
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 330 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 388
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 389 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 447
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 903 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1017
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1018 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1068
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 4e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1166 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1224
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1225 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1284
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1285 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1341
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1342 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1386
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 2e-16
Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 7/216 (3%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA-DSNAPV 68
K+P + D+L K W +R E+ L L ++ L KK + DSN +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 69 QDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDV 128
A L K YA ++ K +P V + +++
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVR 185
+ + +++ NK + +AL+ + K + L + + D VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 186 ASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 221
SS L + +G V +L + +++
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLL-ADVDPLKMAKIK 228
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-15
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 600 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 657
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 658 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 715
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 716 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 772
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 773 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 815
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 8e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 748 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 800
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 801 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 914
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 970
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 971 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1015
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1016 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1068
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1069 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1128
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1129 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1176
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1177 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1235
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1236 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1292 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1348
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1349 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1406
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1407 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1448
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 6e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 242 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 300
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 301 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 353
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 354 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 397
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 398 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 448
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 506
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 507 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 557
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 558 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 668 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 716
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 717 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 761
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 762 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 814
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 815 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 874
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 875 EAVNKILEEANKRIQ 889
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 7e-11
Identities = 82/562 (14%), Positives = 177/562 (31%), Gaps = 144/562 (25%)
Query: 1154 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIE----- 1207
D + Q D++ F + D K D +M + L II
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1208 -----VLDILLRW-------FVLQFCKSNTTCLLKVLEFLP-------ELFDTLRDEGYS 1248
+ LL FV + + N L+ ++ ++ RD Y+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 1249 LTESEAAVFLPCLVEKSGHNIEKVREKMRELTK-QIVNFY---SATKT-LPYILEGLRSK 1303
+ VF V + K+R+ + EL + V + KT + L+ S
Sbjct: 122 DNQ----VFAKYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 1304 NNRTRIECVDLVGFLI-------DHHGAEISGQLKSL--QIVASLTAERDGEIR------ 1348
+++C + F I + + L+ L QI + T+ D
Sbjct: 175 ----KVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1349 --KAALNTL--ATGYK----ILGEDIW-RYVGK---------LTDAQKSMLD--DRFKWK 1388
+A L L + Y+ +L ++ LT K + D
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 1389 VREMEKKKEG-KPGEARAALRRSVRENGSDIAEQSGDVS-QSVSG-PTLMRRNYGHSE-- 1443
++ P E ++ L + + D+ + + + +S +R +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 1444 LHVE----RSIMPRALASVSGPTDWNEALDIIS-FGSPEQSVEGMKVVC---HELAQATN 1495
HV +I+ +L + P ++ + D +S F P + ++ ++ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDV--IKS 402
Query: 1496 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLN------TLMQTFQN 1549
D V+++L K L K K S+ + N +++ +
Sbjct: 403 DVM-VVVNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 1550 KR-------------------LAY---AVQESTLDSLITELLL---WLLDERVPHMDDGS 1584
+ + + ++ +L + L + L++++ H D +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRH--DST 512
Query: 1585 QLLKALNVLMLKILVKFTRKWF 1606
+ ++L +KF + +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYI 534
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 9e-10
Identities = 87/551 (15%), Positives = 161/551 (29%), Gaps = 148/551 (26%)
Query: 2 SEE-EKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKT 60
EE + ++ + RL W + ++ + + + L
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRI------NYKFLMSPI 98
Query: 61 VADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVEKAQAVFML 119
+ P I D +AK V R + K + +
Sbjct: 99 KTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALL- 145
Query: 120 WVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKIIPPKRILKM 172
EL A +V +D + + K VA V + V Q +F P+ +L+M
Sbjct: 146 --ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 173 LPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-- 229
L +L D N + S ++L + ++ +L K + L V L+NV
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV-LLNVQNAK 257
Query: 230 -------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE--------STAD 265
T R T + A + + S + P + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 266 VPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL--ASTKRIAP 320
+P E+ + P S E ++ W + +LT + +S + P
Sbjct: 318 LPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 321 GDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHFSGSSRFLL 368
++ ++ L +I + + + N L S +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN-------------- 414
P + +LK K A+H+ ++VD KT +
Sbjct: 429 PSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 415 ------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---KVHKDYVPI 449
++ L R + L+ ++ T + S L K +K Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-- 534
Query: 450 CMECLNDGTPE 460
C ND E
Sbjct: 535 ---CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-08
Identities = 87/606 (14%), Positives = 175/606 (28%), Gaps = 169/606 (27%)
Query: 582 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 641
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 642 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 698
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 699 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 743 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 800 --DVKPALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDIS 851
+ LL L N F ++ T R + T +S+ + + + S
Sbjct: 240 SKPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHHS 295
Query: 852 GKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEAV 877
TP L+K L+ +P D + + + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 878 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMGP 928
I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 929 --AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD--- 961
VEK K + I LK +N+ H + LD
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAAH 1012
HL + + R D +L +++ +
Sbjct: 474 YSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IKL 1069
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIFE 581
Query: 1070 NGASQV 1075
QV
Sbjct: 582 EAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 6e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 496
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 497 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 556
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 557 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 614
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 615 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 672
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 673 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 726
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 783
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 784 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 963
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 964 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1010
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1011 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1042
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 4e-14
Identities = 71/477 (14%), Positives = 152/477 (31%), Gaps = 51/477 (10%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
LP+ ++ +V L + P+ + L P + V+DKA+
Sbjct: 51 LPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAV 108
Query: 74 DALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVM 133
++L A + + + G T + +
Sbjct: 109 ESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
Query: 134 EKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKG 190
+ +N + L EF + I+ M L + +VR +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225
Query: 191 LTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 250
+ + + + ++ ++ ++ +R + + R + A++ EL + +
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAEDKSW-----------RVRYMVADKFTELQKAV- 273
Query: 251 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELT 310
PEI + +LV L K E A V E
Sbjct: 274 ----------------GPEITKTDLVP---AFQNLMKDCEAEVRAAAS-----HKVKEFC 309
Query: 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 370
+ S +++ +K+L++D N V I L+ L + LLP+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPL 367
Query: 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVT 428
L +LK++ P V ++ L +++ + + ++ + ++ VR + ++
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485
+ +CM L D +R+AA S L + + G +I
Sbjct: 428 LLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 590 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 640
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 641 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 700
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 701 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 815
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 816 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 874 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 990
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 991 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1051 NL 1052
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 670 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 727 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 781
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 782 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 959
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 960 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1014
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 63/466 (13%), Positives = 136/466 (29%), Gaps = 64/466 (13%)
Query: 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLK 81
VR A L + DN E+ P+F +D V+ A++A + +
Sbjct: 175 DDTPMVRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 82 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN-- 139
+ V + + F + ++ + A +N
Sbjct: 233 LLPQED--LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Query: 140 -----KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLE 194
+V A + + LS + + +IL + EL +Q+V+++ + +
Sbjct: 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350
Query: 195 LCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQD--KELGQELISE 252
L +GKD L +K E V I + +G +S+
Sbjct: 351 LSPILGKDNTIEHLLPLFLAQLKDECP----EVRLNI-----ISNLDCVNEVIGIRQLSQ 401
Query: 253 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL 312
+ P + L + KW R + + L
Sbjct: 402 SLLP------------------------AIVELAEDA--------KWRVRLAIIEYMPLL 429
Query: 313 ASTKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371
A ++ F E + + D A+ A + L ++ ++P +
Sbjct: 430 A--GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKV 485
Query: 372 LEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTF 429
L + + + + + ++ ++ V + V VR +
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ + + PI + D +V+ A L ++ +
Sbjct: 546 IGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 4e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 947 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 985
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 986 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1025
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1026 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1085
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1086 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1145
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1146 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1196
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1197 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1256
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1257 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1316
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1317 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1356
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 277 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 333
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 393
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 394 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 450 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 504
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 505 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 561
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 562 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 621
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 622 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 678
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 679 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 734
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 735 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 794
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 795 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 854
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 5e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 969 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1028
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1029 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1075
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1076 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1124
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1125 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1178
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1179 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1238
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1239 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1282
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1283 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1392
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 910
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 967
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 968 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1020
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1021 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1067
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1068 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1128 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1174
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1175 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1224
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1225 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1272
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1273 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1328
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1329 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 357
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 417
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 478 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 508
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 6e-05
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 975
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 976 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1032
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1033 EACIVEI 1039
+V +
Sbjct: 202 VEALVHL 208
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 6e-10
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 374
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 375 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 480
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 481 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 590
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 591 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 635
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 636 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 694
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 695 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 744
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 745 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 804 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 856
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 974
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 975 YVTTAL 980
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 5e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 636
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 637 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 690
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 691 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 750
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 751 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 810
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 870
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 871 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 930
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 931 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 982
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 983 AKLGAEGRKDLFDWLS 998
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 62.8 bits (151), Expect = 9e-10
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 384
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 385 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 434
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 435 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 487
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 488 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 608 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 666
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 667 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 726
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 727 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 784
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 785 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 844 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1021
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1022 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1141
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1142 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1201
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1202 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1261
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1262 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1321
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1322 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 50.1 bits (118), Expect = 7e-06
Identities = 59/523 (11%), Positives = 151/523 (28%), Gaps = 65/523 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKK---------TVADSN 65
P + +K+ +EA + L I + P K AD +
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--TGRPKTVEKAQAVFMLWVEL 123
V+++A+ + + + G + R TV+ + +++
Sbjct: 583 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 642
Query: 124 EAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP--KRILKMLPELFD 178
+ V + + ++ + + + + + + +L LP L
Sbjct: 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLIS 702
Query: 179 HQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMRDTMKKELEVELVNVSGTAR 232
D +V + L + + L +R + + + + A
Sbjct: 703 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762
Query: 233 PTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEIDEYELVDPVDILTPLEKSG 289
+L + L + ++S + + P + + +
Sbjct: 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ-- 820
Query: 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349
F + VK ++ ++ +A L+ I E+ + + + + V A A+
Sbjct: 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 880
Query: 350 GNLARG----------------------------------LRTHFSGSSRFLLPVLLEKL 375
G+++ G + +LL+
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 940
Query: 376 KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435
+ + + + L + ++ ++ +K + + RS + V F I
Sbjct: 941 ECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478
+ + + K+ + ++ L D VR A + A +
Sbjct: 998 QP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 47.4 bits (111), Expect = 5e-05
Identities = 92/709 (12%), Positives = 228/709 (32%), Gaps = 79/709 (11%)
Query: 23 KNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKA 82
+WKVR A L A+ + + + + P + V+ A ++ LK
Sbjct: 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
Query: 83 ADADAGRYAKEVCDAIAAKCLTG----------------RPKTVEKAQAVFMLWVELEAV 126
LT + K+V+ Q F + EL V
Sbjct: 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464
Query: 127 ---------DVFLDVMEKAIKNKVAKAVV--PAIDVMFQALSEFGAKIIPP--KRILKML 173
V + + ++ +K + + + A+ ++ L ++ P + ++ +
Sbjct: 465 LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524
Query: 174 PELFDHQDQNVRASSKGLTLELCRWIG----------KDPVKTILFEKM----RDTMKKE 219
+ + + +T +L + I +K + + + +E
Sbjct: 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE 584
Query: 220 LEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV 279
++ ++ G D ++ E + + +T I L +
Sbjct: 585 VKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDL 644
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV 337
+ ++ + + + ++ L L + V L LI++
Sbjct: 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISES 704
Query: 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHK 395
++ V+ AI + LA+ + S S +L L+ ++ + ++ QA+
Sbjct: 705 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 396 AG--CLNLVDVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452
G L +D++ + V + L + + C+ ++A + +
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 453 CLNDGTPE-VRDAAFSVLAAIAKSVGMRP---LERSIEKLDDVRRNKLSEMIAGSGGDVA 508
N + + +R A L + + + L+ I + ++ + + G ++
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 509 TGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568
G +P V +S ++ + S K +S+A V+
Sbjct: 885 VGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI----- 932
Query: 569 SGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQL----KSAVWKERLEAIS 623
+ L + E E ++ E +L + P + +L S R ++
Sbjct: 933 -----WALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVT 987
Query: 624 SLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 671
+++ + + Q +D ++ + L + ++ V++ + N A
Sbjct: 988 AVKFTISDHPQPIDPLLKNC--IGDFLKTLEDPDLNVRRVALVTFNSAA 1034
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 5e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 643
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 644 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 696
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 749
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 750 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 807
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 808 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 857
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 918 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 973
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 974 PYV 976
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 353
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 354 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 414 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 462
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 463 DAAFSVLAAIAKSVGMRPLERSIEKL 488
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 6e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 742
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 743 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 862
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 923 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 950
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1610 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-14 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-07 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 3e-04 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 8e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.4 bits (194), Expect = 2e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 382 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 430
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 431 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 550
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 551 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 608
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 609 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 667
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 727
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 728 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 785
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 786 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 844
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 845 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 904
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 905 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 962
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 963 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1082
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1083 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1142
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1143 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1202
R+ + + E+ + + + +L +L E ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVIL-----------EAFSSPSEEVK 870
Query: 1203 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1255
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1315
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1316 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1373
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (181), Expect = 8e-14
Identities = 135/1055 (12%), Positives = 295/1055 (27%), Gaps = 111/1055 (10%)
Query: 18 DRLLHKNWKVRNEANIDL-AALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDAL 76
+++ + R A DL L D+ R++ + K + D N VQ+ A+ L
Sbjct: 10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69
Query: 77 IA-YLKAADADAGRYAKEVCDA----------IAAKCLTGRPKTVEKAQAVFMLWVELEA 125
K + +C I++ L + A + L +
Sbjct: 70 GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-- 127
Query: 126 VDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAKIIPP-KRILKMLPELFDHQDQN 183
+ AI + +V + A+D+M LS G ++ IL L
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLA 187
Query: 184 VRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKELEVELVNVSGTARPTRKIRAEQD 242
VR + L G ++ + + + + + A +R+
Sbjct: 188 VRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 247
Query: 243 KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSER 302
+ L + + ++ + + E + + P + +K +
Sbjct: 248 EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 303 KDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362
+ E + D + D++ V A + + +
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 367
Query: 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL----------------------- 399
+ + P L+ + KE++ V + ++ K
Sbjct: 368 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ ++V+ + +K K R N +T + A+ + VP + LND +
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 460 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517
++ A S L I + + ++ L + + + A + V+
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE-ALLVTQQLVK 545
Query: 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577
+ +++ + + K+ G S L
Sbjct: 546 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 605
Query: 578 T----------EAPEDVEPSEMSLEEIESRLGSLIPADTVGQL--------KSAVWKERL 619
+ + +L I + +G+ + +L
Sbjct: 606 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL 665
Query: 620 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 679
+S+L ++ + + I L + P SE ++ V Q I + LA
Sbjct: 666 GTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 680 KCVVLCLLGISERVADIKTRAHAMKCLTTF--------SEAVGPGFIFERLYKIMKDHKN 731
K L + V + A+ + F + +G + L +
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 732 PKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ + V + F +D S + R + LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHH 845
Query: 790 VGPDIKGFLADVKPALLSALDAEYEK------------NPFEGTVVPKKTVRASESTSSV 837
+ ++K +L A + E+ + ++ S
Sbjct: 846 IDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKR 902
Query: 838 SSGGSDGLPR----------EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
L + L+K E + R E + K+ +
Sbjct: 903 QYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 962
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
+ P L+G L + + + + S ++ K + D LK L D
Sbjct: 963 LLPR--------LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 948 NKKHMRECTLTVLDA------WLAAVHLDKMVPYV 976
++R L ++ L LD ++P++
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (159), Expect = 4e-11
Identities = 117/1057 (11%), Positives = 273/1057 (25%), Gaps = 126/1057 (11%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGPLFKKTVADSNAPVQD 70
+L ++R+ ++I L + + + G L + VQ
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 KALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFL 130
+ALD + L + + + + + R ++ V VF+
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV 209
Query: 131 DVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVR 185
D++E + + Q ++ + ++I+ ++ + + D +R
Sbjct: 210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269
Query: 186 ASSKGLTLELCR-------------------------WIGKDPVKTILFEKMRDTMKKEL 220
R D D +
Sbjct: 270 EYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329
Query: 221 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280
+ S + K+R K L + + ++ + + +
Sbjct: 330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREE 385
Query: 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNI 339
+ + +K T+ + + + T + + L K + + ++
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAG 397
+ L L + L+P ++ L +K + + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505
Query: 398 CLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKAAVLKVHKDYVPI 449
+ V V + + S L + I + + +
Sbjct: 506 SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL 565
Query: 450 CMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI---- 500
+ D EV++ A S + I ++ L + + +L I
Sbjct: 566 FTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 501 -AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLSGKRPVSAAPASK 555
+ +A ++ G + ++ S L + +
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 556 KGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLIPADTVGQLKSAV 614
+ + A + +++ + GS++ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLA 671
L A+ Q + + L+R++ + + Q + + + L
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 672 ATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK--DH 729
K V + + + R A+ L + E I++
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
+ +V S +A G + + S L +
Sbjct: 865 PSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSA 917
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPR-- 847
+K ++ ++ LL + E + ++ L +
Sbjct: 918 SVVGLKPYVENIWALLLKHCECAEE---------------------GTRNVVAECLGKLT 956
Query: 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 907
P L L S R + AV + + + I P G L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP 1015
Query: 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-------------- 953
+ N+ L+T + A + VL + K+ +R
Sbjct: 1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075
Query: 954 --------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 982
EC T+LD+ L + + + + +V L D
Sbjct: 1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 2e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 473 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 532
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 533 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 591
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 592 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 644
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 645 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 702
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 703 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 756
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 817 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 928
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 929 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 974
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1034
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1035 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1091
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1092 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1152 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1205
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1206 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1266 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1325
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1326 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 1e-07
Identities = 66/587 (11%), Positives = 172/587 (29%), Gaps = 53/587 (9%)
Query: 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 965
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1023
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1144 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1263
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1264 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1317
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1318 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1374
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1375 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQ 1421
+K+ + + L + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 564
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-06
Identities = 59/519 (11%), Positives = 146/519 (28%), Gaps = 63/519 (12%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVA---------DSN 65
P + +K+ +EA + L I + P K D +
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 66 APVQDKALDALIAYLKAADADAGRYAKEVC--------DAIAAKCLTGRPKTVEKAQAVF 117
V+++A+ + + + G + I + +
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI 639
Query: 118 MLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF 177
L L L + + + + A+D++ + S+ + + ++ P L
Sbjct: 640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPP-LI 698
Query: 178 DHQDQNVRASSKGLTLELCRWIGK----------DPVKTILFEKMRDTMKKELEVELVNV 227
D +V + L + + + ++ + ++
Sbjct: 699 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQA 758
Query: 228 SGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEK 287
+ + L + S+ ++S + + P + + +
Sbjct: 759 LVVTGTNNLGYMDLLRMLTGPVYSQSTAL-THKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347
+ S R A+ L ++ I E+ + + + + V A
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFSSPSEEVKSAASY 875
Query: 348 AIGNLARGLRTHF----------SGSSRFLL-----PVLLEKLKEKKPTVAESLTQTLQA 392
A+G+++ G + ++LL ++ E++ L
Sbjct: 876 ALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935
Query: 393 MHK----------AGCL------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436
+ A CL + ++ +K + + RS + V F I +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ 995
Query: 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475
+ K+ + ++ L D VR A + A +
Sbjct: 996 PIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 768 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 827
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 828 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 948 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1008 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1066 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1125
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1126 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1183
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1184 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1244 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1299
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1300 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 1e-06
Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 15/467 (3%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKAL 73
+P RL +W + L ++C EL F+ +D V+ A
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 DAL--IAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLD 131
L A + D + + + + R VE + L + + + +
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 132 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRA---SS 188
+ +A ++K + D + G +I + + D + + A
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 248
K L ++ + + + +++ + + ++ I + +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 249 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 308
+ E ++ +D V + L+ E + KW R +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 309 LTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368
+ LA + D ++ + D A+ A + L ++ ++
Sbjct: 426 MPLLAGQLGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATII 482
Query: 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNW 426
P +L + + + + + ++ ++ V + V VR
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542
Query: 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473
+ + + + PI + D +V+ A L ++
Sbjct: 543 LQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 7e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 908
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 969 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1024
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1025 SSDVRKAAEACIVEI 1039
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 0.001
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 280 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 339
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 340 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 519
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 520 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 576
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 577 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 631
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 632 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 691
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 692 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 749
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 750 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 809
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 810 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 868
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 869 VRLESIEAVNKI 880
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 3e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 614 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 669
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 670 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 730 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 849
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 909
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 910 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 945
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 3e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 776
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 777 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 896
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 897 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 956
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 957 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1017 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1076
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1077 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1136
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1137 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1195
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1196 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1254
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1255 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1308
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1309 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1365
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1366 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1425
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1426 SQSVS 1430
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 8e-04
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 911
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 965
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 966 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1023
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1024 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1083
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1084 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1143
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1144 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1180
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1181 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1240
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1241 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1281
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1282 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1338 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1610 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.97 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.78 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.74 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.24 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.03 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.91 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.76 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.7 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.57 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.44 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.35 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.06 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.86 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.45 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.27 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 96.81 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.84 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 95.08 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.96 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 92.13 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 90.98 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 90.94 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 90.19 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 86.48 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 84.27 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-36 Score=265.62 Aligned_cols=993 Identities=15% Similarity=0.134 Sum_probs=505.8
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 8233205775468899999999984002899862-454122125764048869999999999999999704211003588
Q 000369 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDN-RIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE 93 (1610)
Q Consensus 15 pl~~~l~~k~WK~R~~ayeel~~~~~~~~~~~~~-~~~~~~~~~~k~v~DsN~~~q~~~leal~~~v~~~~~~~~~~~~~ 93 (1610)
.+.|++.+.++..|..|.++|.+.++...-..|+ ...++.+.+-+.+.|+|..||..|+.++..++..... .....
T Consensus 7 ~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~ 83 (1207)
T d1u6gc_ 7 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 83 (1207)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHHH
T ss_conf 999866798872999999999998723014457688999999999996799879999999999999976768---66999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HH-------HHHHHH----HHHHHH-HCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998420389853699999999999943-00-------233999----999974-01771218799999999999729
Q 000369 94 VCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-EA-------VDVFLD----VMEKAI-KNKVAKAVVPAIDVMFQALSEFG 160 (1610)
Q Consensus 94 v~~~lveK~l~~k~~~k~~a~~~ll~~~e~-~~-------~~~v~~----~l~~~~-~~KnpKv~~~~l~~l~~~l~~fG 160 (1610)
++..|+...++.+..+++.+.-++-..++. .. ...++. .+.... ..+++.++.+++.++..++..||
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g 163 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998568963265999999999999663200231127889999999998763477778999999999999998756
Q ss_pred CCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 89769-26688732453179997799999999999998619702237896128199999999999704799888640035
Q 000369 161 AKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRA 239 (1610)
Q Consensus 161 ~~~i~-~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~~G~~~~~~~l~~~Lkp~q~kel~~~f~~~~~~~~p~r~~rs 239 (1610)
....+ ...+++.+...+.|++..||..|..++..+..+++...+...+ ..+-..+.+.
T Consensus 164 ~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~---------~~ll~~l~~~------------ 222 (1207)
T d1u6gc_ 164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI---------EHLLSELSKN------------ 222 (1207)
T ss_dssp SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH---------HHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH---------HHHHHHHCCC------------
T ss_conf 7668779999999998808999899999999999999877998799999---------9999987059------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 66486411001258999999888889998899766889444357585100334310699499999999999974-48998
Q 000369 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRI 318 (1610)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~d~~~~vdIl~kl~~~~f~~~l~s~kW~~R~eaL~~L~~l~-~~~ki 318 (1610)
..|..|+.++..+..++ ..+..
T Consensus 223 ---------------------------------------------------------~~~~~~~~~~~~l~~l~~~~~~~ 245 (1207)
T d1u6gc_ 223 ---------------------------------------------------------DSMSTTRTYIQCIAAISRQAGHR 245 (1207)
T ss_dssp ---------------------------------------------------------CSSCSCTTHHHHHHHHHHHSSGG
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHHHCCHH
T ss_conf ---------------------------------------------------------98899999999999999876154
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99995899999987706769999999999999999872010003366589999998121718999999999999998369
Q 000369 319 APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1610)
Q Consensus 319 ~~~~~~~l~~~L~~~i~D~N~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~al~ai~~~~~ 398 (1610)
....+.++++.+.+.+.+.+..++..++.+++.++......+.+|...+++.++..++......................
T Consensus 246 ~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~ 325 (1207)
T d1u6gc_ 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGG 325 (1207)
T ss_dssp GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 67779999999998825861777899999999999867465445599999999998740730003467887765554011
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99575699999975218948999999999999970793698775443799999760389968999999999999998088
Q 000369 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 399 ~~l~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~~~~G~ 478 (1610)
.......+.......+.+|.+|..++..+..++...+. .+..++..++|.+...+.|.++.||.++..++..+....+.
T Consensus 326 ~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~ 404 (1207)
T d1u6gc_ 326 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRP 404 (1207)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 01356678887522013389999999999868988899-99999999999999984598548999999999999973032
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25788565202999999999982389999988887534688999998778752010010001257999999888877899
Q 000369 479 RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGG 558 (1610)
Q Consensus 479 ~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~ 558 (1610)
.... .. + +. . .
T Consensus 405 ~~~~-~~---~----------------------~~--~----------------------------~------------- 415 (1207)
T d1u6gc_ 405 VQSW-LC---D----------------------PD--A----------------------------M------------- 415 (1207)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHHH-HH---C----------------------HH--H----------------------------H-------------
T ss_conf 1255-51---5----------------------48--8----------------------------8-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 998888889998775776778998889899999-8899997112938899773048968999999999999985025654
Q 000369 559 PVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ 637 (1610)
Q Consensus 559 ~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~-ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~i~~~~~~~~ 637 (1610)
....++ ......... +-+.+...+.+++++.|..++..
T Consensus 416 ---------------------------~~~~~~~~~l~~~~~~-i~~~l~~~l~~~~~~~r~~~~~~------------- 454 (1207)
T d1u6gc_ 416 ---------------------------EQGETPLTMLQSQVPN-IVKALHKQMKEKSVKTRQCCFNM------------- 454 (1207)
T ss_dssp -----------------------------CCCHHHHHHHHTTH-HHHHHHHHTTCSCHHHHHHHHHH-------------
T ss_pred ---------------------------HHHCCHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHH-------------
T ss_conf ---------------------------7630269999987699-99999998648865678889999-------------
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHH
Q ss_conf 68999999632988776079999999999999999729985145999888888421050----10299999999999630
Q 000369 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAV 713 (1610)
Q Consensus 638 ~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LieKlgd~----K~r~~a~~~L~~l~e~~ 713 (1610)
+..++...+.....+...+++.++..+.+. ..+..+..++..+....
T Consensus 455 -----------------------------l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~ 505 (1207)
T d1u6gc_ 455 -----------------------------LTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 505 (1207)
T ss_dssp -----------------------------HHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred -----------------------------HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf -----------------------------999999722577776675678999997602641688899999999998722
Q ss_pred CHHH-------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC----CCC----HHHHHHHHHHC-CCCCCCHHHHH
Q ss_conf 8144-------89999964410889768999999999999982979----988----47699998750-77898177999
Q 000369 714 GPGF-------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS----HLK----LKDLIDFCKDT-GLQSSAAATRN 777 (1610)
Q Consensus 714 ~~~~-------v~~~l~~~~~~~KnpKv~~~~l~~L~~~i~~fg~~----~l~----~k~li~~l~~~-~l~~~n~~VR~ 777 (1610)
.+.. +.+.+... ..+++++++.+++..+..++..++.. ..+ +..+++.+... .-.+.+.++|.
T Consensus 506 ~~~~~~~~~~~l~~~~~~~-~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~ 584 (1207)
T d1u6gc_ 506 SPQVFHPHVQALVPPVVAC-VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKE 584 (1207)
T ss_dssp CGGGGHHHHTTTHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 6788999987633468888-712308899999999998898750001102554478899999999999873131017889
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999999996629129974310329999999998700899998998765567667688999999998845421134257
Q 000369 778 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT 857 (1610)
Q Consensus 778 aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ 857 (1610)
.++.+++.+....|..+..++...-+.+...+..+..+.. .++.-..... +....+. . .+...+.+.
T Consensus 585 ~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~---------a~~~l~~i~~-~~~~~~~-~--~~l~~~~~~ 651 (1207)
T d1u6gc_ 585 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT---------TVKALTLIAG-SPLKIDL-R--PVLGEGVPI 651 (1207)
T ss_dssp HHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHH---------HHHHHHHHTT-CSSCCCC-H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---------HHHHHHHHHH-HCCCHHH-H--HHHHHHHHH
T ss_conf 8999999898876556588888887778887423045799---------9999999987-3132147-8--999888889
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 98512999926899999999999997021589998236899998501341176999999999999998092378756648
Q 000369 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1610)
Q Consensus 858 ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~~~~l 937 (1610)
+...+.+.+|..|..++..+..++......+.+..+..++..|...+.|.+..++..++.+++.++...+....++...+
T Consensus 652 l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~i 731 (1207)
T d1u6gc_ 652 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSI 731 (1207)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 87750144388999999999999984542100677766777632444344078899999998888862633446678888
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99999981878088999999999999996593102799999983286795369999999999862699998635438999
Q 000369 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017 (1610)
Q Consensus 938 lp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~~l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~~l~~l 1017 (1610)
++.++..+.+.. +...+. ......+...............++..+
T Consensus 732 l~~l~~~~~s~l--~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~l~~~l 776 (1207)
T d1u6gc_ 732 LNELIGLVRSPL--LQGGAL---------------------------------SAMLDFFQALVVTGTNNLGYMDLLRML 776 (1207)
T ss_dssp HHHHHHHHTCTT--CCHHHH---------------------------------HHHHHHHHHHHTTCCTTCSHHHHHHHH
T ss_pred HHHHHHHHCCCH--HHHHHH---------------------------------HHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999860823--555469---------------------------------999999999986066654449999999
Q ss_pred HHHC-CCCCH----HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9721-78997----899999999999999709588998740179057999999996317898888999988888888888
Q 000369 1018 SIAM-TDKSS----DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSAS 1092 (1610)
Q Consensus 1018 ~~~L-~D~~~----dVR~aA~~~l~~l~~~~g~~~~~~~~~~L~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1610)
...+ .+... ........++..+....+... ...+..+ +...
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~~~l~~~-----------l~~~---------------------- 822 (1207)
T d1u6gc_ 777 TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQF-----------IQDV---------------------- 822 (1207)
T ss_dssp STTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTT-----------TTTT----------------------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----------HHHH----------------------
T ss_conf 87512543034578899999999999998632667-9999999-----------9988----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88877898888666788888888875443102211000124679985888642103344558992469999999985410
Q 000369 1093 NGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFR 1172 (1610)
Q Consensus 1093 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~~~~~~~e~~e~L~~q~~~~~~ 1172 (1610)
. . . .. .......++..+ +. ... ......... + .
T Consensus 823 ----------~-------~-~--~~-----~~~~~~~al~~L---ge------~~~--~~~~~~~~~---l--------~ 855 (1207)
T d1u6gc_ 823 ----------K-------N-S--RS-----TDSIRLLALLSL---GE------VGH--HIDLSGQLE---L--------K 855 (1207)
T ss_dssp ----------T-------T-T--TC-----CHHHHHHHHHHH---HH------HHH--HSCCCSCTH---H--------H
T ss_pred ----------H-------C-C--CC-----HHHHHHHHHHHH---HH------HHH--HCCCCCHHH---H--------H
T ss_conf ----------4-------3-4--22-----599999999999---99------998--525311599---9--------9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99998416511998999999999846887467999887999798774067768999999968999999986358887787
Q 000369 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1610)
Q Consensus 1173 ~~l~~~lfs~d~~~~~~~i~~L~~~~~~~~~~~~~~lDlilk~~~~r~~dtN~~v~~k~Le~l~~l~~~l~~~~y~l~~~ 1252 (1610)
..+...+.+.+...|..|...|...... +++..+..+...+ ++..+.-...+..+.+++.. .+......
T Consensus 856 ~~l~~~l~~~~~~vr~aAa~aLg~l~~~-------~~~~~lp~il~~l-~~~~~~~~~ll~al~ei~~~---~~~~~~~~ 924 (1207)
T d1u6gc_ 856 SVILEAFSSPSEEVKSAASYALGSISVG-------NLPEYLPFVLQEI-TSQPKRQYLLLHSLKEIISS---ASVVGLKP 924 (1207)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH-------THHHHHHHHHHHH-HSCGGGHHHHHHHHHHHHHS---SCSTTTHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH---CCHHHHHH
T ss_conf 9999980899889999999999999976-------2888759999987-24735899999999999985---45554687
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 79843679998318983789999999999998407821209999700058864659999999999998617776440004
Q 000369 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS 1332 (1610)
Q Consensus 1253 ea~~~lp~li~K~Gd~k~~vr~~v~~il~~~~~~~~~~kvf~~l~~gl~sKn~r~r~ecl~~l~~li~~~g~~~~~~~k~ 1332 (1610)
.+..+++.|+..+.+..+.+|..+-..+..++.++| ..+++.|.+.++++++.+|..++..+.+++...|...-...+.
T Consensus 925 ~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~ 1003 (1207)
T d1u6gc_ 925 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1003 (1207)
T ss_dssp HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 899999999988179718799999999998870278-9999999998579999999999999999998665546789999
Q ss_pred H-HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 9-9999530379667899999999999986086799985
Q 000369 1333 L-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYV 1370 (1610)
Q Consensus 1333 l-~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~i 1370 (1610)
+ +.+-..++|.|..||.+|+.+|.++-..-++-+..++
T Consensus 1004 li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l 1042 (1207)
T d1u6gc_ 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLL 1042 (1207)
T ss_dssp HSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 999999986799989999999999999984869899999
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-31 Score=231.02 Aligned_cols=930 Identities=12% Similarity=0.109 Sum_probs=525.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999997401771218799999999999729897--6926688732453179997799999999999998619702237
Q 000369 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT 206 (1610)
Q Consensus 129 v~~~l~~~~~~KnpKv~~~~l~~l~~~l~~fG~~~--i~~k~il~~l~~ll~~~d~~VR~~a~~l~~ely~~~G~~~~~~ 206 (1610)
.+..|+..+.+.-|..+..+++.|.+.+....... -..+.+++.+.++++|.|..||+.|..+++.+...+++..+..
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~ 83 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 83 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 69999986679887299999999999872301445768899999999999679987999999999999997676866999
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89612819999999999970479988864003566486411001258999999888889998899766889444357585
Q 000369 207 ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1610)
Q Consensus 207 ~l~~~Lkp~q~kel~~~f~~~~~~~~p~r~~rs~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~d~~d~~~~vdIl~kl~ 286 (1610)
-++..+..
T Consensus 84 ------------l~~~L~~~------------------------------------------------------------ 91 (1207)
T d1u6gc_ 84 ------------IVDTLCTN------------------------------------------------------------ 91 (1207)
T ss_dssp ------------HHHHHHHH------------------------------------------------------------
T ss_pred ------------HHHHHHHH------------------------------------------------------------
T ss_conf ------------99999998------------------------------------------------------------
Q ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCCCC------CCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 100334310699499999999999974-4899899------995899999987706-76999999999999999987201
Q 000369 287 KSGFWEGVKATKWSERKDAVAELTKLA-STKRIAP------GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT 358 (1610)
Q Consensus 287 ~~~f~~~l~s~kW~~R~eaL~~L~~l~-~~~ki~~------~~~~~l~~~L~~~i~-D~N~~v~~~A~~~i~~La~~L~~ 358 (1610)
+.+.+++.|..+...|..+. .-+.... .....++..+...+. ..+..+...++.+++.++..++.
T Consensus 92 -------l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~ 164 (1207)
T d1u6gc_ 92 -------MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164 (1207)
T ss_dssp -------TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred -------HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -------5689632659999999999996632002311278899999999987634777789999999999999987567
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 000336658999999812171899999999999999836-9995756999999752-18948999999999999970793
Q 000369 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSK 436 (1610)
Q Consensus 359 ~f~~~~~~llp~LL~klkdkk~~V~~aa~~al~ai~~~~-~~~l~~il~~i~~~l~-~Knp~vR~~~l~~L~~~l~~~~~ 436 (1610)
.+.++...+++.++..+.+.+..||..+..|+..+..+. ...+..+++.+...+. +.++.+|...+..+.......+.
T Consensus 165 ~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 244 (1207)
T d1u6gc_ 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244 (1207)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 66877999999999880899989999999999999987799879999999999870599889999999999999987615
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 69877544379999976038996899999999999999808825788565202999999999982389999988887534
Q 000369 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1610)
Q Consensus 437 ~~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~~~~G~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~ 516 (1610)
.+.++++.++|.+.+.+++.+.++|+.+..++..+....++. +.+++..+- ..+...... . |....
T Consensus 245 -~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~ii-------~~~l~~l~~-d----p~~~~ 310 (1207)
T d1u6gc_ 245 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTII-------NICLKYLTY-D----PNYNY 310 (1207)
T ss_dssp -GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHHH-------HHHTTCCCC-C---------
T ss_pred -HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHH-------HHHHHHHHC-C----CCHHH
T ss_conf -467779999999998825861777899999999999867465-445599999-------999998740-7----30003
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 68899999877875201001000125799999988887789999888888999877577677899888989999988999
Q 000369 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1610)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1610)
.. . .. . .. .. ... ..++.
T Consensus 311 -------------------~~----------~-------------~~-----~---~~---~~------~~~-~~~~~-- 328 (1207)
T d1u6gc_ 311 -------------------DD----------E-------------DE-----D---EN---AM------DAD-GGDDD-- 328 (1207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------HH----------H-------------HH-----H---HH---HH------HHH-CCCHH--
T ss_conf -------------------46----------7-------------88-----7---76---55------540-11013--
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 971129388997730489689999999999999850256-5468999999632988776079999999999999999729
Q 000369 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1610)
Q Consensus 597 ~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~i~~~~~~-~~~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~~ 675 (1610)
....+.......+..|+.|..+.+.+...+...++. ....+.++..+. ..++|.+..|...++..+..++....
T Consensus 329 ---~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~--~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 329 ---DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI--SRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH--STTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf ---5667888752201338999999999986898889999999999999999--98459854899999999999997303
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 9851459998888884210501029999999999963081448999996441088976899999999999998297998-
Q 000369 676 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL- 754 (1610)
Q Consensus 676 ~~~~~~~~~il~~LieKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~~~~~KnpKv~~~~l~~L~~~i~~fg~~~l- 754 (1610)
...... ..+... ..++.- .. .+ .+. .+ .++..+.+. ..+++++++..++.++..++..++....
T Consensus 404 ~~~~~~---~~~~~~-~~~~~~-~~----~l---~~~-~~-~i~~~l~~~-l~~~~~~~r~~~~~~l~~l~~~~~~~l~~ 468 (1207)
T d1u6gc_ 404 PVQSWL---CDPDAM-EQGETP-LT----ML---QSQ-VP-NIVKALHKQ-MKEKSVKTRQCCFNMLTELVNVLPGALTQ 468 (1207)
T ss_dssp CC----------------CCCH-HH----HH---HHH-TT-HHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHSTTTTGG
T ss_pred CHHHHH---HCHHHH-HHHCCH-HH----HH---HHH-HH-HHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 212555---154888-763026-99----99---987-69-999999998-64886567888999999999972257777
Q ss_pred CHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHCHH-HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 84769999875077898--1779999999999999662912-99743103299999999987008999989987655676
Q 000369 755 KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 831 (1610)
Q Consensus 755 ~~k~li~~l~~~~l~~~--n~~VR~aA~~ll~~Ly~~~G~~-l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~ 831 (1610)
.+..+++.+... +.+. ...+|..+..++..+....++. +..++..
T Consensus 469 ~l~~~~~~i~~~-l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~------------------------------- 516 (1207)
T d1u6gc_ 469 HIPVLVPGIIFS-LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQA------------------------------- 516 (1207)
T ss_dssp GHHHHHHHHHHH-TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTT-------------------------------
T ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-------------------------------
T ss_conf 667567899999-760264168889999999999872267889999876-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--C----HHHHHHHHHHCCC
Q ss_conf 676889999999988454211342579851299992689999999999999702158999--8----2368999985013
Q 000369 832 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--G----TGELFGGLRGRLY 905 (1610)
Q Consensus 832 ~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~--~----~~eL~~~L~~~L~ 905 (1610)
+.+.+...+.+..|+++.+++..+..++........+. . +.+++..+..++.
T Consensus 517 ----------------------l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~ 574 (1207)
T d1u6gc_ 517 ----------------------LVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 574 (1207)
T ss_dssp ----------------------THHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred ----------------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------------3346888871230889999999999889875000110255447889999999999987
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-------CHHHHHHH
Q ss_conf --411769999999999999980923787566489999998187808899999999999999659-------31027999
Q 000369 906 --DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYV 976 (1610)
Q Consensus 906 --Dsn~~v~~~al~~i~~la~alg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-------l~~~l~~l 976 (1610)
|....++..++.+++.+....|..+.++...+++.++..+.+.. .|..+..++..+..... +..+++.+
T Consensus 575 ~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l 652 (1207)
T d1u6gc_ 575 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 652 (1207)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 3131017889899999989887655658888888777888742304--57999999999987313214789998888898
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC--CHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 99983286795369999999999862699998--6354-38999972178997899999999999999709588998740
Q 000369 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP--DAAH-LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1610)
Q Consensus 977 ~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~--~~~~-~l~~l~~~L~D~~~dVR~aA~~~l~~l~~~~g~~~~~~~~~ 1053 (1610)
...+.+. ++..|..++..+...+..++... .... ++..+...+.|.+..+|..+..++..+....+. .+.....
T Consensus 653 ~~~l~~~--~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~-~~~~~~~ 729 (1207)
T d1u6gc_ 653 ASFLRKN--QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS-SLSKISG 729 (1207)
T ss_dssp HHHTTSC--CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGG-GGGGTTT
T ss_pred HHHCCCC--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHH
T ss_conf 7750144--388999999999999984542100677766777632444344078899999998888862633-4466788
Q ss_pred CCCHH-------------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17905-------------79999999963178988889999888888888888887789888866678888888887544
Q 000369 1054 DIQGP-------------ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMS 1120 (1610)
Q Consensus 1054 ~L~~~-------------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1120 (1610)
.+-+. ....+...+....... .+. ..
T Consensus 730 ~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~----------------~~~-----------------~~-------- 768 (1207)
T d1u6gc_ 730 SILNELIGLVRSPLLQGGALSAMLDFFQALVVTG----------------TNN-----------------LG-------- 768 (1207)
T ss_dssp TTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTC----------------CTT-----------------CS--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC----------------CCC-----------------CC--------
T ss_conf 8899999986082355546999999999998606----------------665-----------------44--------
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH---HHHHHHH---HHHHHHH----CC--CCHHHHH
Q ss_conf 310221100012467998588864210334455899246999999---9985410---9999841----65--1199899
Q 000369 1121 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELEN---DMMKYFR---EDLHRRL----LS--TDFKKQV 1188 (1610)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~~~~~~~e~~e~L~~---q~~~~~~---~~l~~~l----fs--~d~~~~~ 1188 (1610)
..+ -...+.....+ ......+.+..+.+.. .+...++ ......+ .+ ..+..|.
T Consensus 769 ~~~---l~~~l~~~~~~------------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 833 (1207)
T d1u6gc_ 769 YMD---LLRMLTGPVYS------------QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRL 833 (1207)
T ss_dssp HHH---HHHHHSTTTTT------------C----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHH
T ss_pred HHH---HHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 499---99999875125------------430345788999999999999986326679999999998843422599999
Q ss_pred HHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999998---468874679998879997987740677689999999689999999863588877877984367999831
Q 000369 1189 DGLEMLQK---ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1265 (1610)
Q Consensus 1189 ~~i~~L~~---~~~~~~~~~~~~lDlilk~~~~r~~dtN~~v~~k~Le~l~~l~~~l~~~~y~l~~~ea~~~lp~li~K~ 1265 (1610)
-++..|.+ ...... ..-+...+...|.+.+..|-..+...+..+.. .....++|+++..+
T Consensus 834 ~al~~Lge~~~~~~~~~------~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~-----------~~~~~~lp~il~~l 896 (1207)
T d1u6gc_ 834 LALLSLGEVGHHIDLSG------QLELKSVILEAFSSPSEEVKSAASYALGSISV-----------GNLPEYLPFVLQEI 896 (1207)
T ss_dssp HHHHHHHHHHHHSCCCS------CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-----------HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_conf 99999999998525311------59999999998089988999999999999997-----------62888759999987
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCC-------CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 898378999999999999840782-------1209999700058864659999999999998617776440004999995
Q 000369 1266 GHNIEKVREKMRELTKQIVNFYSA-------TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1338 (1610)
Q Consensus 1266 Gd~k~~vr~~v~~il~~~~~~~~~-------~kvf~~l~~gl~sKn~r~r~ecl~~l~~li~~~g~~~~~~~k~l~~ia~ 1338 (1610)
+...+.....++.+-+.+.. .+. ..+++.|...+.+.+..+|..+.+-+|.+... .+...++.+..
T Consensus 897 ~~~~~~~~~ll~al~ei~~~-~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~------~~~~~lp~L~~ 969 (1207)
T d1u6gc_ 897 TSQPKRQYLLLHSLKEIISS-ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI------DPETLLPRLKG 969 (1207)
T ss_dssp HSCGGGHHHHHHHHHHHHHS-SCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS------SGGGTHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_conf 24735899999999999985-455546878999999999881797187999999999988702------78999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHC
Q ss_conf 3037966789999999999998608679998504
Q 000369 1339 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1610)
Q Consensus 1339 ~i~drd~~VR~aAl~~l~~~y~~~G~~v~~~ig~ 1372 (1610)
.+.|.++.+|.+|+.++.......|+.+..|+..
T Consensus 970 ~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~ 1003 (1207)
T d1u6gc_ 970 YLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1003 (1207)
T ss_dssp TSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 8579999999999999999998665546789999
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-29 Score=212.79 Aligned_cols=563 Identities=17% Similarity=0.185 Sum_probs=352.7
Q ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 0033431069949999999999997448998999-958999999877067699999999999999998720100033665
Q 000369 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1610)
Q Consensus 288 ~~f~~~l~s~kW~~R~eaL~~L~~l~~~~ki~~~-~~~~l~~~L~~~i~D~N~~v~~~A~~~i~~La~~L~~~f~~~~~~ 366 (1610)
.-|.+.+.+.+...|..++..|..++.. +.+. .-.++++.|...+.|.. .|...+++.++.+..-++. ..++..
T Consensus 13 ~~l~~~l~~~~~~~R~~a~~~l~~ia~~--lg~~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~--~~~~~~ 87 (588)
T d1b3ua_ 13 AVLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCC--HHHHHH
T ss_conf 9999986699989999999999999998--4917459999999999865868-9999999999999987487--468999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 89999998121718999999999999998369995756----99999975218948999999999999970793698775
Q 000369 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1610)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~al~ai~~~~~~~l~~i----l~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~ 442 (1610)
++|.+...+.+....||+++..++..+... .+...+ +|.+..-.++.....|..++..+..+....+...
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---- 161 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---- 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 999999980699889999999999999986--79888999999999998646314799999999999999861899----
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44379999976038996899999999999999808825788565202999999999982389999988887534688999
Q 000369 443 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGS 522 (1610)
Q Consensus 443 l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~~~~G~~~~~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~~ 522 (1610)
...+.+.+...+.|.++.||.++..+++.+.+.++.....+.+ -+ .+.+.+.. +.
T Consensus 162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l---~~----~l~~l~~d---------~~--------- 216 (588)
T d1b3ua_ 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI---IP----MFSNLASD---------EQ--------- 216 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH---HH----HHHHHHTC---------SC---------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH---HH----HHHHHHCC---------CC---------
T ss_conf 9999999999851699899999999999899871578779999---99----99997448---------85---------
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99877875201001000125799999988887789999888888999877577677899888989999988999971129
Q 000369 523 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLI 602 (1610)
Q Consensus 523 ~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll 602 (1610)
..++..+...... . ....+.++... .+
T Consensus 217 ---------~~vr~~a~~~l~~--------------------------------i--------~~~~~~~~~~~----~i 243 (588)
T d1b3ua_ 217 ---------DSVRLLAVEACVN--------------------------------I--------AQLLPQEDLEA----LV 243 (588)
T ss_dssp ---------HHHHTTHHHHHHH--------------------------------H--------HHHSCHHHHHH----HT
T ss_pred ---------HHHHHHHHHHHHH--------------------------------H--------HCCCCHHHHHH----HH
T ss_conf ---------2467899988877--------------------------------6--------30588899999----99
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 38899773048968999999999999985025654689999996329887760799999999999999997299851459
Q 000369 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1610)
Q Consensus 603 ~~~l~~~L~s~~Wk~Rl~a~~~L~~~i~~~~~~~~~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~ 682 (1610)
.+.+...+.+.+|..|..+++.+.......+.. .....++..+.. .++|.+..|...++..+..++...+.....
T Consensus 244 ~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~--ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~-- 318 (588)
T d1b3ua_ 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQN--LMKDCEAEVRAAASHKVKEFCENLSADCRE-- 318 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHTSCTTTHH--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999997202356888899998578888776653-434441689999--872133577799998799999987665543--
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99888888421050102999999999996308144899999644108897689999999999999829799884769999
Q 000369 683 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (1610)
Q Consensus 683 ~~il~~LieKlgd~K~r~~a~~~L~~l~e~~~~~~v~~~l~~~~~~~KnpKv~~~~l~~L~~~i~~fg~~~l~~k~li~~ 762 (1610)
... ...+++.+... ..+.++.+|..+...+..+...+|... ....+++.
T Consensus 319 ~~~-----------------------------~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~-~~~~l~p~ 367 (588)
T d1b3ua_ 319 NVI-----------------------------MSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN-TIEHLLPL 367 (588)
T ss_dssp HHH-----------------------------HHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH-HHHHTHHH
T ss_pred HHH-----------------------------HHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHH
T ss_conf 321-----------------------------99998888876-138876789999998865543013167-88888888
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87507789817799999999999996629129974310329999999998700899998998765567667688999999
Q 000369 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1610)
Q Consensus 763 l~~~~l~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~ 842 (1610)
+... +.+.++.||..+...++.+...+|..-
T Consensus 368 l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~------------------------------------------------ 398 (588)
T d1b3ua_ 368 FLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ------------------------------------------------ 398 (588)
T ss_dssp HHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH------------------------------------------------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHH------------------------------------------------
T ss_conf 9999-875102222677888888875003134------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99884542113425798512999926899999999999997021589998236899998501341176999999999999
Q 000369 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 922 (1610)
Q Consensus 843 d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~l 922 (1610)
+...+.+.+...+.|.+|+.|..+++.+..++...+.... ...+...+...+.|.+..|+..|+.+++.+
T Consensus 399 -------~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l 468 (588)
T d1b3ua_ 399 -------LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKL 468 (588)
T ss_dssp -------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf -------4367789999998433588999999999999977184767---788888877635687416899999999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99809237875664899999981878088999999999999996593----10279999998328679536999999999
Q 000369 923 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLS 998 (1610)
Q Consensus 923 a~alg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l----~~~l~~l~~~L~~~~~~~~~R~~~l~~L~ 998 (1610)
+..+|+.+. ...++|.+...+.|++..+|.++..++..+...++. ..++|.+...+.++ .|.+|..++..+.
T Consensus 469 ~~~~~~~~~--~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~ 544 (588)
T d1b3ua_ 469 VEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVRFNVAKSLQ 544 (588)
T ss_dssp HHHHCHHHH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHH
T ss_pred HHHHCCHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHH
T ss_conf 998393878--999999999986599878999999999999998696878999999999885999--8799999999999
Q ss_pred HHHCCCCCCCCHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 986269999863543899-99721789978999999999999
Q 000369 999 KQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1039 (1610)
Q Consensus 999 ~~l~~~~~~~~~~~~l~~-l~~~L~D~~~dVR~aA~~~l~~l 1039 (1610)
......+. ......+.| +...++|.+.|||..|.+++..+
T Consensus 545 ~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 545 KIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99987080-757999999999975799877999999999987
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-26 Score=197.45 Aligned_cols=455 Identities=13% Similarity=0.100 Sum_probs=291.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf 8899773048968999999999999985-0256546899999963298877607999999999999999972-9985145
Q 000369 604 ADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKC 681 (1610)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~~~L~~~i~~-~~~~~~~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~-~~~~~~~ 681 (1610)
+-+...+.+.+|+.|.+|+..+....++ .+...+..+.++..+. ..++|.+..|...++.++..+.+.. .......
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~--~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~ 475 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 475 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHH--HHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998875122056899999998643555578774212035567999--842699899999999999999998665415655
Q ss_pred HHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999888888421050--102999999999996308144------899999644108897689999999999999829799
Q 000369 682 VVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 753 (1610)
Q Consensus 682 ~~~il~~LieKlgd~--K~r~~a~~~L~~l~e~~~~~~------v~~~l~~~~~~~KnpKv~~~~l~~L~~~i~~fg~~~ 753 (1610)
...+++.++..+.|. +++..+..+|..+++..+... +++.+... +..-..+++...+..+..++...|...
T Consensus 476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~-l~~~~~~~~~~~~~al~~l~~~~~~~~ 554 (888)
T d1qbkb_ 476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA-FSKYQHKNLLILYDAIGTLADSVGHHL 554 (888)
T ss_dssp TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4555899998842898789998999999999875531135799999999999-860037799999999999998623101
Q ss_pred CC---HHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHC----C-CCCCCCC
Q ss_conf 88---47699998750--7789817799999999999996629129974310329999999998700----8-9999899
Q 000369 754 LK---LKDLIDFCKDT--GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK----N-PFEGTVV 823 (1610)
Q Consensus 754 l~---~k~li~~l~~~--~l~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k----~-~~~~~~~ 823 (1610)
.. ...+++.+... .+.+.+. .+.....++..+....|..+..|...+-+..++.+...+.. . ....-..
T Consensus 555 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 633 (888)
T d1qbkb_ 555 NKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 633 (888)
T ss_dssp CSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 3367999999999999975121068-899999999999998678776569999999998899899999987416201100
Q ss_pred CCCC-CCCCCC-CCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 8765-567667-688-9999999988454211342579851299992689999999999999702158999823689999
Q 000369 824 PKKT-VRASES-TSS-VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGL 900 (1610)
Q Consensus 824 p~r~-~r~~~~-~~~-~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L 900 (1610)
+... ....-. ... ..+-+....+-+. ...+.+-++..+.+.++.+|..++..++.+.......+.|. ..+++..|
T Consensus 634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~-~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~-l~~~~~~l 711 (888)
T d1qbkb_ 634 PDKDFMIVALDLLSGLAEGLGGNIEQLVA-RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPIL 711 (888)
T ss_dssp CCTHHHHHHHHHHHHHHHHHTTTTHHHHH-TSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 06889999999988899873056666665-85699999999679976899999999887787516877877-99999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCC------CHHH
Q ss_conf 850134117699999999999999809237875664899999981878--08899999999999999659------3102
Q 000369 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKM 972 (1610)
Q Consensus 901 ~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~~~~llp~ll~~l~D~--k~~Vr~aa~~aL~~~~~~~~------l~~~ 972 (1610)
...|.+.+..++..++.++|.|+..+|..+.||+..+++.++..+.+. +..|++.+..|+..+...++ ++.+
T Consensus 712 ~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~ 791 (888)
T d1qbkb_ 712 GTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQF 791 (888)
T ss_dssp HHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 98738677899999999999999987798650599999999998769986378999999999999987979888649999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 79999998328679536999999999986269999--8635438999972178997899999999999999709588998
Q 000369 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1610)
Q Consensus 973 l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~--~~~~~~l~~l~~~L~D~~~dVR~aA~~~l~~l~~~~g~~~~~~ 1050 (1610)
++.+...|.... +.+.|..++..+...+...+.. +.+..++. .+....+..++++......+..+...+|.+....
T Consensus 792 ~~~~~~~l~~~~-d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~ 869 (888)
T d1qbkb_ 792 IRPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRR 869 (888)
T ss_dssp HHHHHHHHTTSC-CSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999726379-81899999999999999784988877999999-9970379978999999999999998769275999
Q ss_pred HHHCCCHHHHHHHHHH
Q ss_conf 7401790579999999
Q 000369 1051 NLKDIQGPALALILER 1066 (1610)
Q Consensus 1051 ~~~~L~~~~~~~i~~~ 1066 (1610)
++.+|+|..+.++...
T Consensus 870 ~~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 870 FSDQFPLPLKERLAAF 885 (888)
T ss_dssp HHHSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
T ss_conf 9975999999999986
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.2e-25 Score=187.34 Aligned_cols=416 Identities=15% Similarity=0.158 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH-
Q ss_conf 5899999987706769999999999999999872010003366589999998121718999999999999998369995-
Q 000369 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL- 401 (1610)
Q Consensus 323 ~~~l~~~L~~~i~D~N~~v~~~A~~~i~~La~~L~~~f~~~~~~llp~LL~klkdkk~~V~~aa~~al~ai~~~~~~~l- 401 (1610)
..++...+.+.+.|.+..|+..++.+++.+++.++.. .....++|.+...+.|....||.++..++..+... .+.
T Consensus 162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~--~~~~ 237 (588)
T d1b3ua_ 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL--LPQE 237 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH--SCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCHH
T ss_conf 9999999999851699899999999999899871578--77999999999974488524678999888776305--8889
Q ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf ---75699999975218948999999999999970793698775443799999760389968999999999999998088
Q 000369 402 ---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 402 ---~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~~~~G~ 478 (1610)
..+++.+...+++++|.+|..++..+..+....++... .+.++|.+...+.|.+++||..|..+++.+...++.
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~ 314 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT---KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH---HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999720235688889999857888877665343---444168999987213357779999879999998766
Q ss_pred HHH-HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 257-8856520299999999998238999998888753468899999877875201001000125799999988887789
Q 000369 479 RPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1610)
Q Consensus 479 ~~~-~~~l~~Ld~~~~kki~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~ 557 (1610)
... ..++..+-
T Consensus 315 ~~~~~~~~~~i~-------------------------------------------------------------------- 326 (588)
T d1b3ua_ 315 DCRENVIMSQIL-------------------------------------------------------------------- 326 (588)
T ss_dssp TTHHHHHHHTHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
T ss_conf 554332199998--------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99988888899987757767789988898999998899997112938899773048968999999999999985025654
Q 000369 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ 637 (1610)
Q Consensus 558 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~a~~~L~~~i~~~~~~~~ 637 (1610)
+.+...+.+.+|..|..+...+.......+.. .
T Consensus 327 ----------------------------------------------~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~-~ 359 (588)
T d1b3ua_ 327 ----------------------------------------------PCIKELVSDANQHVKSALASVIMGLSPILGKD-N 359 (588)
T ss_dssp ----------------------------------------------HHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH-H
T ss_pred ----------------------------------------------HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH-H
T ss_conf ----------------------------------------------88887613887678999999886554301316-7
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 68999999632988776079999999999999999729985145999888888421050102999999999996308144
Q 000369 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGF 717 (1610)
Q Consensus 638 ~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~~~~~~~~~~~il~~LieKlgd~K~r~~a~~~L~~l~e~~~~~~ 717 (1610)
..+.++..+.. .++|.+..|....+..+ ..+....+...
T Consensus 360 ~~~~l~p~l~~--~l~d~~~~v~~~~~~~l---------------------------------------~~~~~~~~~~~ 398 (588)
T d1b3ua_ 360 TIEHLLPLFLA--QLKDECPEVRLNIISNL---------------------------------------DCVNEVIGIRQ 398 (588)
T ss_dssp HHHHTHHHHHH--HHTCSCHHHHHHHHTTC---------------------------------------HHHHHHSCHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH---------------------------------------HHHHHHCCHHH
T ss_conf 88888888999--98751022226778888---------------------------------------88875003134
Q ss_pred ----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHH
Q ss_conf ----8999996441088976899999999999998297998847699998750778981779999999999999662912
Q 000369 718 ----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (1610)
Q Consensus 718 ----v~~~l~~~~~~~KnpKv~~~~l~~L~~~i~~fg~~~l~~k~li~~l~~~~l~~~n~~VR~aA~~ll~~Ly~~~G~~ 793 (1610)
+++.+... .++.+|++|..++..+..+...+|...+. ..+.+.+..+ +.|.+..||.+|...++.+....|+.
T Consensus 399 ~~~~ll~~l~~~-~~d~~~~~r~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~-l~D~~~~VR~~A~~~L~~l~~~~~~~ 475 (588)
T d1b3ua_ 399 LSQSLLPAIVEL-AEDAKWRVRLAIIEYMPLLAGQLGVEFFD-EKLNSLCMAW-LVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCGGGCC-HHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 436778999999-84335889999999999999771847677-8888887763-56874168999999999999983938
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 99743103299999999987008999989987655676676889999999988454211342579851299992689999
Q 000369 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 873 (1610)
Q Consensus 794 l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~ea 873 (1610)
... ..+.+.+...+.+++|..|..+
T Consensus 476 ~~~-------------------------------------------------------~~i~~~l~~~~~~~~~~~R~~~ 500 (588)
T d1b3ua_ 476 WAH-------------------------------------------------------ATIIPKVLAMSGDPNYLHRMTT 500 (588)
T ss_dssp HHH-------------------------------------------------------HHTHHHHHHTTTCSCHHHHHHH
T ss_pred HHH-------------------------------------------------------HHHHHHHHHHHCCCCHHHHHHH
T ss_conf 789-------------------------------------------------------9999999998659987899999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999970215899982368999985013411769999999999999980923787566489999998187808899
Q 000369 874 IEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1610)
Q Consensus 874 l~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~~~~llp~ll~~l~D~k~~Vr 953 (1610)
+..+..+....... ....++++.|...+.|+..+|+..++++++.+....+.. .+...+.|.+-..+.|....||
T Consensus 501 ~~~l~~l~~~~~~~---~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~L~~D~d~dVr 575 (588)
T d1b3ua_ 501 LFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVK 575 (588)
T ss_dssp HHHHHHHHHHHHHH---HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHCCHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999986968---789999999998859998799999999999999870807--5799999999997579987799
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 000369 954 ECTLTVLDAWL 964 (1610)
Q Consensus 954 ~aa~~aL~~~~ 964 (1610)
..|..+++.+.
T Consensus 576 ~~A~~al~~l~ 586 (588)
T d1b3ua_ 576 YFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999874
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.6e-18 Score=138.55 Aligned_cols=362 Identities=12% Similarity=0.158 Sum_probs=192.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
Q ss_conf 8968999999999999985025654689999996329887760799999999999999997299-851459998888884
Q 000369 613 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-FPKKCVVLCLLGISE 691 (1610)
Q Consensus 613 ~~Wk~Rl~a~~~L~~~i~~~~~~~~~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~~~-~~~~~~~~il~~Lie 691 (1610)
..|..|..+...+.......+.. ....+..++.. .+...+......++..+..++..+.. .....+..+++.++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~ 418 (861)
T d2bpta1 343 DDWNVSMSAGACLQLFAQNCGNH--ILEPVLEFVEQ--NITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH--HHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 14778888999988877603314--66541111354--200177788888998999988410266688878999999988
Q ss_pred HHCCC--HHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHCCCCCC-----HHH
Q ss_conf 21050--10299999999999630814----48999996441--0889768999999999999982979988-----476
Q 000369 692 RVADI--KTRAHAMKCLTTFSEAVGPG----FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVSHLK-----LKD 758 (1610)
Q Consensus 692 Klgd~--K~r~~a~~~L~~l~e~~~~~----~v~~~l~~~~~--~~KnpKv~~~~l~~L~~~i~~fg~~~l~-----~k~ 758 (1610)
.+.|. .+|..+..++..+++..++. ..+..++..+. ...+++++..++..+..++..+...... ...
T Consensus 419 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 498 (861)
T d2bpta1 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPA 498 (861)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 73376205666898899999998130100477620456899860246708999999999999987523022114688754
Q ss_pred HHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998750-77898177999999999999966291299743103299999999987008999989987655676676889
Q 000369 759 LIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 837 (1610)
Q Consensus 759 li~~l~~~-~l~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~ 837 (1610)
++..+... .-.+.+..+|..+..++..+....+..+..++..+.+.....+.........
T Consensus 499 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~------------------- 559 (861)
T d2bpta1 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN------------------- 559 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_conf 7889999874212348999999998999999868888999999999999999999988865-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC-CHHHHHHHH
Q ss_conf 9999999884542113425798512999926899999999999997021589998236899998501341-176999999
Q 000369 838 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATL 916 (1610)
Q Consensus 838 ~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Ds-n~~v~~~al 916 (1610)
.+.... ....+..+......+..++......+.+. ..+++..+...+.+. ...++..++
T Consensus 560 ---------------~~~~~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~l 619 (861)
T d2bpta1 560 ---------------QLTLED----AQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVF 619 (861)
T ss_dssp ---------------GCCHHH----HHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHH
T ss_pred ---------------HHHHHH----HHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf ---------------411667----76799999999999999986153657999-9999999751001588365887899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999809237875664899999981878088999999999999996593102799999983286795369999999
Q 000369 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1610)
Q Consensus 917 ~~i~~la~alg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~~l~~l~~~L~~~~~~~~~R~~~l~~ 996 (1610)
.+++.++..+|..|.+|+..++|.++..+.|....+|..+..++..+...++- .+.|.
T Consensus 620 ~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~-~~~~~--------------------- 677 (861)
T d2bpta1 620 YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRY--------------------- 677 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHH---------------------
T ss_conf 99988887745789999999705999873799889999999999999997578-72711---------------------
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 99986269999863543899997217--8997899999999999999709588998740
Q 000369 997 LSKQLTGLSGFPDAAHLLKPASIAMT--DKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1610)
Q Consensus 997 L~~~l~~~~~~~~~~~~l~~l~~~L~--D~~~dVR~aA~~~l~~l~~~~g~~~~~~~~~ 1053 (1610)
...++..+..++. +.+.++|.++..+++.+...+|.. +.+++.
T Consensus 678 -------------~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~-~~~~l~ 722 (861)
T d2bpta1 678 -------------SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-FIPYLN 722 (861)
T ss_dssp -------------HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG-GHHHHH
T ss_pred -------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf -------------999999999985788888999999999999999998798-899999
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.6e-18 Score=137.80 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999999999982979988-47699998750778-9817799999999999996629129974310329999999998
Q 000369 735 LSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1610)
Q Consensus 735 ~~~~l~~L~~~i~~fg~~~l~-~k~li~~l~~~~l~-~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ll~~L~~e 812 (1610)
+...+..+..++..++....+ ...++..+... +. ..+..||..+..+++.+...+|+.+.+|+..+.|
T Consensus 573 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p--------- 642 (861)
T d2bpta1 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSP--------- 642 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 999999999998615365799999999997510-0158836588789999988887745789999999705---------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 70089999899876556766768899999999884542113425798512999926899999999999997021589998
Q 000369 813 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 892 (1610)
Q Consensus 813 f~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~dIs~~l~~~ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~ 892 (1610)
.++..+.+.++.+|..++..+..+.......+.+.
T Consensus 643 --------------------------------------------~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~- 677 (861)
T d2bpta1 643 --------------------------------------------YLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY- 677 (861)
T ss_dssp --------------------------------------------HHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHH-
T ss_pred --------------------------------------------HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf --------------------------------------------99987379988999999999999999757872711-
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCH-----------HHHHHHHHH
Q ss_conf 236899998501341--1769999999999999980923787566489999998187808-----------899999999
Q 000369 893 TGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-----------HMRECTLTV 959 (1610)
Q Consensus 893 ~~eL~~~L~~~L~Ds--n~~v~~~al~~i~~la~alg~~~~~~~~~llp~ll~~l~D~k~-----------~Vr~aa~~a 959 (1610)
..+++..|...+.+. +..++..++.+++.++..+|..|.||+..+++.+...+..... .+|+++..+
T Consensus 678 ~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 757 (861)
T d2bpta1 678 SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757 (861)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999998578888899999999999999999879889999999999999857677754189999999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000369 960 LDAWLA 965 (1610)
Q Consensus 960 L~~~~~ 965 (1610)
+..++.
T Consensus 758 ~~~i~~ 763 (861)
T d2bpta1 758 YVGIVA 763 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.8e-23 Score=172.28 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH-HHHCCCHHHHHH
Q ss_conf 864659999999999998617776440-004999995303796678999999999999860867999-850499988987
Q 000369 1303 KNNRTRIECVDLVGFLIDHHGAEISGQ-LKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR-YVGKLTDAQKSM 1380 (1610)
Q Consensus 1303 Kn~r~r~ecl~~l~~li~~~g~~~~~~-~k~l~~ia~~i~drd~~VR~aAl~~l~~~y~~~G~~v~~-~ig~l~~~~~s~ 1380 (1610)
++..-+..+..-+..+|+...-.+... .+-+..||.... -.++++++..+.|.......|+..|. +++++++..+.-
T Consensus 803 ~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~ 881 (888)
T d1qbkb_ 803 RDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN-PKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKER 881 (888)
T ss_dssp CCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 9818999999999999997849888779999999970379-978999999999999998769275999997599999999
Q ss_pred HHH
Q ss_conf 999
Q 000369 1381 LDD 1383 (1610)
Q Consensus 1381 l~e 1383 (1610)
|.+
T Consensus 882 l~~ 884 (888)
T d1qbkb_ 882 LAA 884 (888)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.6e-14 Score=113.33 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
Q ss_conf 95899999987706--76999999999999999987201-000336658999999812--17189999999999999983
Q 000369 322 DFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLK--EKKPTVAESLTQTLQAMHKA 396 (1610)
Q Consensus 322 ~~~~l~~~L~~~i~--D~N~~v~~~A~~~i~~La~~L~~-~f~~~~~~llp~LL~klk--dkk~~V~~aa~~al~ai~~~ 396 (1610)
.+.+++..|...+. |.+..++..++.+++.++..++. .+.++...+++.++..+. +....++.++..++..++..
T Consensus 125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~ 204 (876)
T d1qgra_ 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 63899999999865999968999999999999998777887788899999999998717574579999999999878887
Q ss_pred C----CC-C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6----99-9-5756999999752189489999999999999707936987754-43799999760389968999999999
Q 000369 397 G----CL-N-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVL 469 (1610)
Q Consensus 397 ~----~~-~-l~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~~~l~~~l~Ds~~~VR~aA~~~l 469 (1610)
. .. . ...+++.+...+++.++.+|..++..+...+...... +.+++ +.+.+.+...+.+.+.+++..+.+.+
T Consensus 205 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (876)
T d1qgra_ 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-METYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 31012577899999999999825998899999999999999996999-88878879999999873453389999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 000369 470 AAIAK 474 (1610)
Q Consensus 470 ~~l~~ 474 (1610)
..+..
T Consensus 284 ~~i~~ 288 (876)
T d1qgra_ 284 SNVCD 288 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99888
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.7e-14 Score=111.71 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=107.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHC-CCCCCCCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 43106994999999999999744-899899995-89999998770676999999999999999987201-----------
Q 000369 292 EGVKATKWSERKDAVAELTKLAS-TKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT----------- 358 (1610)
Q Consensus 292 ~~l~s~kW~~R~eaL~~L~~l~~-~~ki~~~~~-~~l~~~L~~~i~D~N~~v~~~A~~~i~~La~~L~~----------- 358 (1610)
..+.+.+|+.|+.+++.+..+.. .+....... ..+...+...+.+.+..++..++..+..++.....
T Consensus 224 ~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 303 (876)
T d1qgra_ 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98259988999999999999999969998887887999999987345338999999999999888899999873378875
Q ss_pred ---------C-CHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf ---------0-00336658999999812-------17189999999999999983-699957569999997521894899
Q 000369 359 ---------H-FSGSSRFLLPVLLEKLK-------EKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVR 420 (1610)
Q Consensus 359 ---------~-f~~~~~~llp~LL~klk-------dkk~~V~~aa~~al~ai~~~-~~~~l~~il~~i~~~l~~Knp~vR 420 (1610)
. ...+...++|.++..+. +....++.++..++..+... ...-++.+++.+...+.+.+|..|
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r 383 (876)
T d1qgra_ 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 31699999999998899887765788874300235433139999999999999873666535567899986025137888
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999970793698775443799999760389968999999999999998088
Q 000369 421 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1610)
Q Consensus 421 ~~~l~~L~~~l~~~~~~~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~~~~G~ 478 (1610)
..++..+...........+..++..+++.+...+.|.++.||.++..+++.+...+++
T Consensus 384 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T d1qgra_ 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 9999988766643229889899999999999861578608999999889999998131
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=5.6e-11 Score=88.73 Aligned_cols=215 Identities=7% Similarity=0.036 Sum_probs=132.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHH
Q ss_conf 1088976899999999999998297998-847-69999875077898177999999999999966291299743103299
Q 000369 727 KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLK-DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA 804 (1610)
Q Consensus 727 ~~~KnpKv~~~~l~~L~~~i~~fg~~~l-~~k-~li~~l~~~~l~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~l~~lkp~ 804 (1610)
..+.++.++..++..+..+++.++.... .+. .+...+... +.+.+..+|..|+.++..+.......
T Consensus 225 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~i~~~~~~~----------- 292 (458)
T d1ibrb_ 225 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA-MKSDIDEVALQGIEFWSNVCDEEMDL----------- 292 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH-HHCSSHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 259989999999999999998719999988877899999998-43545999999999999989988999-----------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHH-------CCCCCHHHHHHHH
Q ss_conf 99999998700899998998765567667688999999998845---4211342579851-------2999926899999
Q 000369 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE---DISGKFTPTLVKS-------LESPDWKVRLESI 874 (1610)
Q Consensus 805 ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~~~~~d~~pr~---dIs~~l~~~ll~~-------l~d~~Wk~R~eal 874 (1610)
.....+.......+ . ..... .+...+.+.+... ..+.+|..|..+.
T Consensus 293 ----~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~ 348 (458)
T d1ibrb_ 293 ----AIEASEAAEQGRPP----E----------------HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 348 (458)
T ss_dssp ----HHHHCCTTCSSSCS----S----------------CCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred ----HHHHHHHHHHHHHH----H----------------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHH
T ss_conf ----98503678764189----9----------------99999999889987266776400010210112233999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9999999970215899982368999985013411769999999999999980-923787566489999998187808899
Q 000369 875 EAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1610)
Q Consensus 875 ~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~al-g~~~~~~~~~llp~ll~~l~D~k~~Vr 953 (1610)
..+..+.... ....+..++..+...+.+.+..++..++.+++.++... +..+.+|...++|.++..+.|....||
T Consensus 349 ~~l~~l~~~~----~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR 424 (458)
T d1ibrb_ 349 VCLMLLATCC----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 424 (458)
T ss_dssp HHHHHHHHHT----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHC----CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999998755----175566789999998569998999999999999997547767898899999999988489989999
Q ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Q ss_conf 999999999999659----3102799999983
Q 000369 954 ECTLTVLDAWLAAVH----LDKMVPYVTTALT 981 (1610)
Q Consensus 954 ~aa~~aL~~~~~~~~----l~~~l~~l~~~L~ 981 (1610)
.+|..|+..+.+.++ .+..++.+...|-
T Consensus 425 ~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 425 DTAAWTVGRICELLPEAAINDVYLAPLLQCLI 456 (458)
T ss_dssp HHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999972010013568999999982
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.3e-10 Score=82.58 Aligned_cols=64 Identities=8% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCH
Q ss_conf 088976899999999999998297998--84769999875077898177999999999999966291
Q 000369 728 DHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1610)
Q Consensus 728 ~~KnpKv~~~~l~~L~~~i~~fg~~~l--~~k~li~~l~~~~l~~~n~~VR~aA~~ll~~Ly~~~G~ 792 (1610)
.+.+|++|.+++..|..+.+.-+...+ .+..+++.+.+. +.|+++.||.+|..+++.+..+++.
T Consensus 375 ~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~VR~~a~~~l~~i~~~~~~ 440 (458)
T d1ibrb_ 375 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL-MKDPSVVVRDTAAWTVGRICELLPE 440 (458)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 69998999999999999997547767898899999999988-4899899999999999999997201
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=4e-08 Score=68.92 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=4.0
Q ss_pred CCCHHHHHHHHH
Q ss_conf 899789999999
Q 000369 1023 DKSSDVRKAAEA 1034 (1610)
Q Consensus 1023 D~~~dVR~aA~~ 1034 (1610)
+.|.+||+.|..
T Consensus 416 ~~n~~i~~~a~~ 427 (434)
T d1q1sc_ 416 HENESVYKASLN 427 (434)
T ss_dssp CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 998999999999
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=8.3e-07 Score=59.82 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=5.9
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 106994999999999999
Q 000369 294 VKATKWSERKDAVAELTK 311 (1610)
Q Consensus 294 l~s~kW~~R~eaL~~L~~ 311 (1610)
+.+.+-..+..|+..+++
T Consensus 22 l~s~~~~~~~~a~~~l~~ 39 (434)
T d1q1sc_ 22 INSNNLESQLQATQAARK 39 (434)
T ss_dssp HTSSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHH
T ss_conf 769899999999999999
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=4.6e-06 Score=54.65 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=95.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999987706769999999999999999872--010003366589999998121-7189999999999999983699957
Q 000369 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKAGCLNLV 402 (1610)
Q Consensus 326 l~~~L~~~i~D~N~~v~~~A~~~i~~La~~L--~~~f~~~~~~llp~LL~klkd-kk~~V~~aa~~al~ai~~~~~~~l~ 402 (1610)
.++.|.+.++|.+..++..|+.++..++..- +..+-. ...+++.|+..+.. ....+++.+..++..+..+ .....
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 95 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CHHHH
T ss_conf 999999987299999999999999999845577899987-1339999999984799999999999999999589-16699
Q ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf -----56999999752189489999999999999707936987754437999997603899689999999999999
Q 000369 403 -----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 403 -----~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~ 473 (1610)
..++.+...+++.++.++..++..|..+....+...-.-.-...+|.++..+.+.++++|..+..++..+.
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 171 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9998798999999857979899999999999865132011367876588148999887057688888899998876
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=7.1e-06 Score=53.38 Aligned_cols=184 Identities=13% Similarity=0.119 Sum_probs=93.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC-H--HHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCHHH-
Q ss_conf 0334310699499999999999974489989999-5--899999987706-7699999999999999998720100033-
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-F--TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eaL~~L~~l~~~~ki~~~~-~--~~l~~~L~~~i~-D~N~~v~~~A~~~i~~La~~L~~~f~~~- 363 (1610)
.+...+.+.+-..+..++..+++++...+-.+-+ . ..+++.|...+. +.+..+...|+.++..++.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99998649999999999999999974078843999998798499999871799999999999999999749888779999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 66589999998121718999999999999998369995------756999999752189489999999999999707936
Q 000369 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1610)
Q Consensus 364 ~~~llp~LL~klkdkk~~V~~aa~~al~ai~~~~~~~l------~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~ 437 (1610)
-..++|.++..+......+++.+..++..+... +... ..+++.+...+.+.++.++..++..+..+.......
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 678747899985599715899999999998541-1899998874135563012045688899999999999984687420
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 987754437999997603899689999999999999
Q 000369 438 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 438 ~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~ 473 (1610)
.-......++|.+...+...+++++..+..++..+.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~ 274 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 274 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 479999999999998723563899999999987532
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1e-05 Score=52.23 Aligned_cols=177 Identities=13% Similarity=0.105 Sum_probs=73.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC--CCH-----HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8899773048968999999999999985025--654-----689999996329887760799999999999999997299
Q 000369 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1610)
Q Consensus 604 ~~l~~~L~s~~Wk~Rl~a~~~L~~~i~~~~~--~~~-----~~~~lv~~l~~~pg~~DsN~~V~~~~l~~l~~l~~~~~~ 676 (1610)
++++..+.+.+-..++.++..+.+.+..... .+. ....+++.+. .+.|..++..++.++..+......
T Consensus 79 ~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~-----~~~~~~iq~~a~~~L~ni~~~~~~ 153 (503)
T d1wa5b_ 79 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR-----ENQPEMLQLEAAWALTNIASGTSA 153 (503)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTS-----TTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 999998649999999999999999974078843999998798499999871-----799999999999999999749888
Q ss_pred CCHHHH-HHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 851459-998888884210--501029999999999963081-------4489999964410889768999999999999
Q 000369 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1610)
Q Consensus 677 ~~~~~~-~~il~~LieKlg--d~K~r~~a~~~L~~l~e~~~~-------~~v~~~l~~~~~~~KnpKv~~~~l~~L~~~i 746 (1610)
...... .-+++.++..+- +..++..+..+|..++..... ..+++.++.. ..+.++.++..++..+..+.
T Consensus 154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~l-l~~~~~~~~~~~~~~l~nl~ 232 (503)
T d1wa5b_ 154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL-FNSNKPSLIRTATWTLSNLC 232 (503)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG-GGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-CCCCCHHHHHHHHHHHHHHH
T ss_conf 77999967874789998559971589999999999854118999988741355630120-45688899999999999984
Q ss_pred HHHCCC-CC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 982979-98-847699998750778981779999999999999
Q 000369 747 EDFGVS-HL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1610)
Q Consensus 747 ~~fg~~-~l-~~k~li~~l~~~~l~~~n~~VR~aA~~ll~~Ly 787 (1610)
...... .. ....+++.+... +.+.++.++..+..++..+.
T Consensus 233 ~~~~~~~~~~~~~~~l~~l~~~-l~~~d~~~~~~~~~~l~~l~ 274 (503)
T d1wa5b_ 233 RGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLS 274 (503)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHC
T ss_conf 6874204799999999999987-23563899999999987532
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.5e-05 Score=51.12 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999812171899999999999999
Q 000369 368 LPVLLEKLKEKKPTVAESLTQTLQAMH 394 (1610)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~al~ai~ 394 (1610)
+|.|+..+++....++..+..+|..+.
T Consensus 103 i~~Li~lL~~~~~~v~~~a~~aL~~l~ 129 (529)
T d1jdha_ 103 IPALVKMLGSPVDSVLFYAITTLHNLL 129 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999857979899999999999865
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.1e-06 Score=59.09 Aligned_cols=187 Identities=12% Similarity=0.053 Sum_probs=128.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC-HHHHH
Q ss_conf 0334310699499999999999974489989--99958999999877067699999999999999998720100-03366
Q 000369 289 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSR 365 (1610)
Q Consensus 289 ~f~~~l~s~kW~~R~eaL~~L~~l~~~~ki~--~~~~~~l~~~L~~~i~D~N~~v~~~A~~~i~~La~~L~~~f-~~~~~ 365 (1610)
.......+.++.+|..|++.|..++...... -...+.+...+...+.+.+..++..|+.+++.++..-...- .-...
T Consensus 21 ~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 100 (264)
T d1xqra1 21 TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 100 (264)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 17776507999999999999999976978899999869999999998379999999999999999998888888999972
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 58999999812-1718999999999999998369995------7569999997521894899999999999997079369
Q 000369 366 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1610)
Q Consensus 366 ~llp~LL~klk-dkk~~V~~aa~~al~ai~~~~~~~l------~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~ 438 (1610)
..+|.|+..+. +....++..+..++..++.+ .... ...++.+...+.+.++.++..++..+..+....+...
T Consensus 101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 101 GALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 76379999960499899999999999987424-40267899872012688998805865788999999999874457788
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87754437999997603899689999999999999980
Q 000369 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1610)
Q Consensus 439 l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~~~~ 476 (1610)
-.-.-...+|.++..+.+.++++|..+..+++.+....
T Consensus 180 ~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 88887646899999973999899999999999998648
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=8.1e-05 Score=46.03 Aligned_cols=253 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999875077898177999999999999-9662912997431032999999999870089999899876556766768899
Q 000369 760 IDFCKDTGLQSSAAATRNATIKLLGAL-HKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 838 (1610)
Q Consensus 760 i~~l~~~~l~~~n~~VR~aA~~ll~~L-y~~~G~~l~~~l~~lkp~ll~~L~~ef~k~~~~~~~~p~r~~r~~~~~~~~~ 838 (1610)
.+.+..+ |+|.|+.||..|+..++.+ .....+.+..++.+..+.....--..+.+.....
T Consensus 21 ~~~L~~~-L~d~~~~vR~~A~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~------------------ 81 (276)
T d1oyza_ 21 DDELFRL-LDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK------------------ 81 (276)
T ss_dssp HHHHHHH-TTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT------------------
T ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC------------------
T ss_conf 9999988-469999999999999986188739999999980999899999999998720221------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999988454211342579851-29999268999999999999970215899982368999985013411769999999
Q 000369 839 SGGSDGLPREDISGKFTPTLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 917 (1610)
Q Consensus 839 ~~~~d~~pr~dIs~~l~~~ll~~-l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~ 917 (1610)
.....+.+.++.. +.|.+|.+|..++..+..+....... ...++..+...+.|.+..++..++.
T Consensus 82 ----------~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~ 146 (276)
T d1oyza_ 82 ----------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAF 146 (276)
T ss_dssp ----------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ----------2120229999999866997668999999999870246210-----1899999999864720489999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999998092378756648999999818780889999999999999965931027999999832867953699999999
Q 000369 918 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWL 997 (1610)
Q Consensus 918 ~i~~la~alg~~~~~~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~~l~~l~~~L~~~~~~~~~R~~~l~~L 997 (1610)
.++.+... ..++.++..+.+....++..+..++..+ ........+.+...+.+. ++..|..+..-+
T Consensus 147 ~l~~~~~~----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~al 212 (276)
T d1oyza_ 147 AISVINDK----------ATIPLLINLLKDPNGDVRNWAAFAININ--KYDNSDIRDCFVEMLQDK--NEEVRIEAIIGL 212 (276)
T ss_dssp HHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHH--TCCCHHHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred HHHHCCHH----------HHHHHHHHHCCCCCCHHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHH--HHHHHHHHCCCC
T ss_conf 87410238----------8999988740466401113577787765--102111331666641100--001233320010
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC-CHHHHHHHHHHHHHC
Q ss_conf 9986269999863543899997217899789999999999999970958899874017-905799999999631
Q 000369 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILERIKLN 1070 (1610)
Q Consensus 998 ~~~l~~~~~~~~~~~~l~~l~~~L~D~~~dVR~aA~~~l~~l~~~~g~~~~~~~~~~L-~~~~~~~i~~~l~~~ 1070 (1610)
... .....++.++.++.|.+ ||..+..+|+.+...---..+...+.+- +...+....+.|.++
T Consensus 213 ~~~--------~~~~~~~~L~~~l~d~~--vr~~a~~aL~~ig~~~~~~~L~~~l~~~~d~~vr~~A~~~L~k~ 276 (276)
T d1oyza_ 213 SYR--------KDKRVLSVLCDELKKNT--VYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKRS 276 (276)
T ss_dssp HHT--------TCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTCC
T ss_pred CHH--------HHHHHHHHHHHHHCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 000--------00004999999957959--99999999987599879999999980499999999999997049
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=5.9e-06 Score=53.94 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHH
Q ss_conf 92689999999999999702--158999823689999850134117699999999999999809237875-664899999
Q 000369 866 DWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDIL 942 (1610)
Q Consensus 866 ~Wk~R~eal~~l~~ll~~a~--~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~-~~~llp~ll 942 (1610)
++..|..|++.+..++.... ..+.. .|-+...+...+.+.+..++..|+.+++.++..-...-... -...+|.++
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~--~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQ--LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHH--CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999999999769788999998--699999999983799999999999999999988888889999727637999
Q ss_pred HHHC-CCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC-CH--H
Q ss_conf 9818-78088999999999999996593-------102799999983286795369999999999862699998-63--5
Q 000369 943 KCLG-DNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--A 1011 (1610)
Q Consensus 943 ~~l~-D~k~~Vr~aa~~aL~~~~~~~~l-------~~~l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~-~~--~ 1011 (1610)
..+. +....+|..+..++..++..... ...++.+...+.+. ++..+..++..+..+....+... .+ .
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9960499899999999999987424402678998720126889988058--65788999999999874457788888876
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 438999972178997899999999999999
Q 000369 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1610)
Q Consensus 1012 ~~l~~l~~~L~D~~~dVR~aA~~~l~~l~~ 1041 (1610)
..++.++..+.+.++++|..|..+|..+..
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 468999999739998999999999999986
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=0.00071 Score=39.51 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHCCC
Q ss_conf 368999985013411769999999999999980923-7875664899999981878
Q 000369 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDN 948 (1610)
Q Consensus 894 ~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~-~~~~~~~llp~ll~~l~D~ 948 (1610)
..++..+...+.+.+ ....++.+++.+...++.. +.+++..++..+++.+...
T Consensus 720 ~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~ 773 (959)
T d1wa5c_ 720 VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (959)
T ss_dssp HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 879999999877983--068999999999997851446768999999999998704
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.45 E-value=1.8e-05 Score=50.56 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=44.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999981217189999999999999983699957569999997521894899999999999997079369877544379
Q 000369 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1610)
Q Consensus 368 lp~LL~klkdkk~~V~~aa~~al~ai~~~~~~~l~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 447 (1610)
++.|++.+.|....||..+..++..+ .-...++.+...+++++|.||..++..|... +. +...
T Consensus 24 ~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~~-------~~~~ 86 (111)
T d1te4a_ 24 FEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG-------ERVR 86 (111)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS-------HHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHC------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----CC-------CCHH
T ss_conf 99999997499878999999998761------0123279987330230337999999999986----76-------1149
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99997603899689999999999
Q 000369 448 PICMECLNDGTPEVRDAAFSVLA 470 (1610)
Q Consensus 448 ~~l~~~l~Ds~~~VR~aA~~~l~ 470 (1610)
+.+...++|.++.||.+|..+|.
T Consensus 87 ~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 87 AAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999882998999999999987
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.27 E-value=8.2e-05 Score=46.03 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 98512999926899999999999997021589998236899998501341176999999999999998092378756648
Q 000369 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1610)
Q Consensus 858 ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~~~~l 937 (1610)
|+..+.|.+|.+|..++..+..+- ..+.++.|...|.|.+..|+..++..++.+. . ...
T Consensus 27 L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~----~------~~~ 85 (111)
T d1te4a_ 27 LLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----G------ERV 85 (111)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----S------HHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----C------CCH
T ss_conf 999974998789999999987610-----------1232799873302303379999999999867----6------114
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999981878088999999999
Q 000369 938 LSDILKCLGDNKKHMRECTLTVL 960 (1610)
Q Consensus 938 lp~ll~~l~D~k~~Vr~aa~~aL 960 (1610)
++.|...+.|....||.+|..+|
T Consensus 86 ~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 86 RAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999988299899999999998
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.011 Score=31.30 Aligned_cols=107 Identities=9% Similarity=0.071 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 89999998121718999999999999998369995------756999999752189489999999999999707936987
Q 000369 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1610)
Q Consensus 367 llp~LL~klkdkk~~V~~aa~~al~ai~~~~~~~l------~~il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~~~l~ 440 (1610)
.+|.|++.++...+.|+..+..+|..+... .... ...++.+...|++.++.+|..++..|.++....+... .
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~-~ 80 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK-L 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH-H
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH-H
T ss_conf 789999985799999999999999999849-99999999988859999998779998999999999999974998889-9
Q ss_pred HHH-HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 754-43799999760-389968999999999999998
Q 000369 441 KVH-KDYVPICMECL-NDGTPEVRDAAFSVLAAIAKS 475 (1610)
Q Consensus 441 ~~l-~~l~~~l~~~l-~Ds~~~VR~aA~~~l~~l~~~ 475 (1610)
... ...++.+++.+ .+.++++|..+..+++.+...
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~ 117 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9998798289999984337388999999999999864
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.014 Score=30.48 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 699999975218948999999999999970793--6987754437999997603899689999999999999
Q 000369 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1610)
Q Consensus 404 il~~i~~~l~~Knp~vR~~~l~~L~~~l~~~~~--~~l~~~l~~l~~~l~~~l~Ds~~~VR~aA~~~l~~l~ 473 (1610)
.+|.+...|++.+|.++..++.+|.......+. ..+. -.-.+|.++++|.+.+++||..|..+|+.+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 72 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY--QLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHH--HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH--HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 789999985799999999999999999849999999999--8885999999877999899999999999997
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.84 E-value=0.0029 Score=35.29 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=7.1
Q ss_pred HHHHHHCCCCHHHHHHH
Q ss_conf 32453179997799999
Q 000369 172 MLPELFDHQDQNVRASS 188 (1610)
Q Consensus 172 ~l~~ll~~~d~~VR~~a 188 (1610)
.|..++.|.|..||..+
T Consensus 70 ~L~~Ll~D~d~~VR~~A 86 (233)
T d1lrva_ 70 ALTPLIRDSDEVVRRAV 86 (233)
T ss_dssp GGGGGTTCSSHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHH
T ss_conf 99988269898999999
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.064 Score=25.96 Aligned_cols=188 Identities=9% Similarity=0.041 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-C-CCC--CCCHHHHHHHHHH----CC---CCCCHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 9992689999999999999702-1-589--9982368999985----01---3411769999999999999980923787
Q 000369 864 SPDWKVRLESIEAVNKILEEAN-K-RIQ--PAGTGELFGGLRG----RL---YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1610)
Q Consensus 864 d~~Wk~R~eal~~l~~ll~~a~-~-~i~--~~~~~eL~~~L~~----~L---~Dsn~~v~~~al~~i~~la~alg~~~~~ 932 (1610)
+.+|+.|..++..+..+..... . ... .....++...+.. .+ .+....++..++.+++..+.... .+
T Consensus 416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~ 492 (959)
T d1wa5c_ 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KA 492 (959)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC---HH
T ss_conf 621677889999999998631266665521230434999999999999736887509999999999987774126---78
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHCCCCCHHHH----H
Q ss_conf 566489999998187808899999999999999659-----------------3102799999983286795369----9
Q 000369 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----------------LDKMVPYVTTALTDAKLGAEGR----K 991 (1610)
Q Consensus 933 ~~~~llp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~-----------------l~~~l~~l~~~L~~~~~~~~~R----~ 991 (1610)
+...+++.++..+.|....||..|..|+..+..... +..++..+...+.... ....+ .
T Consensus 493 ~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~-~~~~~~~~~~ 571 (959)
T d1wa5c_ 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG-SSPEKLAENE 571 (959)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTC-CCHHHHTSCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_conf 899999999987279961589999999999998660033200103288777569999999999998612-2025678899
Q ss_pred HHHHHHHHHHCCCCCC--CCHHHHHHHHHHH----C-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 9999999986269999--8635438999972----1-7899789999999999999970958899874017
Q 000369 992 DLFDWLSKQLTGLSGF--PDAAHLLKPASIA----M-TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1610)
Q Consensus 992 ~~l~~L~~~l~~~~~~--~~~~~~l~~l~~~----L-~D~~~dVR~aA~~~l~~l~~~~g~~~~~~~~~~L 1055 (1610)
.++..+...+...+.. +....++..+... . ++.+...+....+++..+....|.+....+...+
T Consensus 572 ~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l 642 (959)
T d1wa5c_ 572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM 642 (959)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999879888889999999999999998568423678999999999999842813599999999
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.96 E-value=0.019 Score=29.63 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=60.8
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 98512999926899999999999997021589998236899998501341176999999999999998092378756648
Q 000369 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1610)
Q Consensus 858 ll~~l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~~~~l 937 (1610)
|...+.|++|.+|..+...+ + . ..|...+.|.+..|+..+.. .++.
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~------------~---~---~~L~~L~~D~d~~VR~~aA~-------~~~~--------- 164 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI------------P---P---GRLFRFMRDEDRQVRKLVAK-------RLPE--------- 164 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS------------C---G---GGGGGTTTCSCHHHHHHHHH-------HSCG---------
T ss_pred HHHHHCCCCHHHHHHHHHCC------------C---H---HHHHHHHCCCCHHHHHHHHH-------HCCH---------
T ss_conf 99985599878999998611------------0---6---68998834897899999998-------4599---------
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99999981878088999999999999996593102799999983286795369999999999862699998635438999
Q 000369 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1017 (1610)
Q Consensus 938 lp~ll~~l~D~k~~Vr~aa~~aL~~~~~~~~l~~~l~~l~~~L~~~~~~~~~R~~~l~~L~~~l~~~~~~~~~~~~l~~l 1017 (1610)
+.++..+.|....||..+...+ +. +.|...+.++ ++.+|..+...+ ...+
T Consensus 165 -~~L~~l~~D~d~~VR~~aa~~L-------~~----~~L~~l~~D~--d~~VR~aaae~~----------------~~~l 214 (233)
T d1lrva_ 165 -ESLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHA----------------SLEA 214 (233)
T ss_dssp -GGGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHS----------------CHHH
T ss_pred -HHHHHHCCCCCHHHHHHHHHHC-------CC----HHHHHHHHCC--CHHHHHHHHHHC----------------CHHH
T ss_conf -9999870599889999999845-------84----9999987399--889999999706----------------3999
Q ss_pred HHHCCCCCHHHHHHHHH
Q ss_conf 97217899789999999
Q 000369 1018 SIAMTDKSSDVRKAAEA 1034 (1610)
Q Consensus 1018 ~~~L~D~~~dVR~aA~~ 1034 (1610)
+..|.|.+++||.+|.+
T Consensus 215 l~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 215 LRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHCCCCCHHHHHHHHC
T ss_pred HHHHCCCCHHHHHHHHH
T ss_conf 99867999999999997
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.21 Score=22.43 Aligned_cols=98 Identities=14% Similarity=0.265 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHH
Q ss_conf 299992689999999999999702158999823689999850134117699999999999999809237875--664899
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~--~~~llp 939 (1610)
+...||.. +-++..++... +..-.+.+.+|+.|+...|..+...|+.++..++...|+.|... .+.|+.
T Consensus 14 ~~~~dw~~----il~icD~I~~~-----~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~ 84 (143)
T d1mhqa_ 14 MSEQDWSA----IQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (143)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHCC-----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89867999----99999999768-----9779999999999974998999999999999999876789999993089999
Q ss_pred HHHHHHCC------CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998187------808899999999999999659
Q 000369 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D------~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+...+.+ ....|++-+...+..|.....
T Consensus 85 ~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~ 119 (143)
T d1mhqa_ 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (143)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999730357887879999999999999999858
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.98 E-value=0.27 Score=21.64 Aligned_cols=98 Identities=16% Similarity=0.315 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH--HHHHH
Q ss_conf 2999926899999999999997021589998236899998501341176999999999999998092378756--64899
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~~--~~llp 939 (1610)
+.+.||.. +-++..++.. .+..-.+.+.+|+.+|.+.|.+++..|+.++..++...|..|...+ +.++.
T Consensus 18 ~~~~dw~~----il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWPS----ILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHC-----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 89889999----9999999957-----98559999999999974998899999999999999714668999992688999
Q ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998187-808899999999999999659
Q 000369 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D-~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+...+.. +...|++-+...+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999985579987999999999999999827
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.27 Score=21.61 Aligned_cols=98 Identities=13% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHH
Q ss_conf 299992689999999999999702158999823689999850134117699999999999999809237875--664899
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~--~~~llp 939 (1610)
+.+.||..=.+ +..++... +..-.+.+.+|+.|+...|.+++..|+.++..++...|+.|... .+.|+.
T Consensus 15 l~~~dw~~ile----icD~In~~-----~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~ 85 (151)
T d1juqa_ 15 NRQEDWEYIIG----FCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 85 (151)
T ss_dssp CSSCCHHHHHH----HHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHHHHHH----HHHHHHCC-----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89857999999----99998369-----9659999999999984998999999999999999972699999996189999
Q ss_pred HHHHHHCC------CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998187------808899999999999999659
Q 000369 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D------~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+.+.+.. ....|++-+...+..|....+
T Consensus 86 ~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 86 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999733578885669999999999999999860
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.32 Score=21.17 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHH--HHHHHH
Q ss_conf 299992689999999999999702158999823689999850134117699999999999999809237875--664899
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1610)
Q Consensus 862 l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~Dsn~~v~~~al~~i~~la~alg~~~~~~--~~~llp 939 (1610)
+...||.. +-++..++.. .+..-.+.+.+|+.||...|.++...|+.++..++...|+.|... .+.|+.
T Consensus 21 l~~~dw~~----ileicD~I~~-----~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~ 91 (145)
T d1ujka_ 21 NKELDWAS----INGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 91 (145)
T ss_dssp CSSCCHHH----HHHHHHHHTS-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHH
T ss_pred CCCCCHHH----HHHHHHHHHC-----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88867999----9999999827-----99669999999999984998899999999999999988499999994089999
Q ss_pred HHHHHHCC------CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998187------808899999999999999659
Q 000369 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 940 ~ll~~l~D------~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
.+...+.+ ....|++-+...+..|....+
T Consensus 92 ~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 92 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999710368898769999999999999998777
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.48 E-value=0.54 Score=19.57 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=7.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 97401771218799999999999
Q 000369 135 KAIKNKVAKAVVPAIDVMFQALS 157 (1610)
Q Consensus 135 ~~~~~KnpKv~~~~l~~l~~~l~ 157 (1610)
+.+.++||+++.-++..+-.++.
T Consensus 45 krl~~~n~~~~l~aL~LLe~~vk 67 (143)
T d1mhqa_ 45 HKIQSPQEKEALYALTVLEMCMN 67 (143)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99749989999999999999998
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.68 Score=18.87 Aligned_cols=98 Identities=20% Similarity=0.405 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHH--HHHHH
Q ss_conf 29999268999999999999970215899982368999985013-4117699999999999999809237875--66489
Q 000369 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1610)
Q Consensus 862 l~d~~Wk~R~eal~~l~~ll~~a~~~i~~~~~~eL~~~L~~~L~-Dsn~~v~~~al~~i~~la~alg~~~~~~--~~~ll 938 (1610)
+...||..=.+ +...+.. .+..-.+.+.+|+.||. ..|.+++..|+.++..+++..|..|... .+.++
T Consensus 25 l~~~dw~~il~----icD~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl 95 (153)
T d1elka_ 25 LQSEDWALNME----ICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 95 (153)
T ss_dssp CSSCCHHHHHH----HHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCCHHHHHH----HHHHHHC-----CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 88636999999----9999927-----98679999999999982599899999999999999997569999999538889
Q ss_pred HHHHH-HHC---CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999-818---7808899999999999999659
Q 000369 939 SDILK-CLG---DNKKHMRECTLTVLDAWLAAVH 968 (1610)
Q Consensus 939 p~ll~-~l~---D~k~~Vr~aa~~aL~~~~~~~~ 968 (1610)
-.++. ... +....|++-+...+..|.....
T Consensus 96 ~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (153)
T d1elka_ 96 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129 (153)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999997226799729999999999999999866
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