Citrus Sinensis ID: 000377

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600-----

MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARR

cccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHccccccHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHccccccccEEEEHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHcccccEEEEccccccccHHHHHHHHHcccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHccccccccEEEEccccccHHHHHHcccEEEEcccccccHHHHHHHHHHHHccccccEEEEEEEEccHHHHHHHHHHHHHHccHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcc

ccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccEEcEcccccccccccccccEEEccccccEEcccccccccHHHHHHcccccccccccccccccccccccccccccccccEcccccHccccccccHHHHccccccHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHcccccccccccccccccccccccccccHHHHccEEccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHcccccccccHHHHHHHHHcccccccccccHcccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEccccccccccccHccccccccccccccccccccccccccEcccccccccccccccccccccccccccccHcccccEEccccccccccccccccccccccccHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccHHHcHHHcccccccccccHHHHHHcHHHHHHHHHHHHHcccccHccccccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEHHHHHHccccHHHHHccEEEEEEccccHccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHcHHHccccccHHHHHccccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccEEccccccccccccccccHHHHHHccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccccEcccccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHcccccHEEEcccccccccHHHHHHHHHHHHHHccHHcccccccHHHHHHHHHcc

MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMkssgkehsmpyQVISRAMETVINQngldmealkssrlpltsgsqigdsstaqcagsssqvagvvkdskaglaenemskiepftssrppvapsgaghdyyqasgthrssqsfdhespssldtrsansqsqerqkdgkkastkrkrgdssishepqnenpqqldsrnsvvnprkgkmnkvdapggfsvkgaeqsnfnmvpsggqmehfsslsgnMSSILRVKqegqnvtekpldsanvsnsvprasnskfpeevevsasgqqqgnslssangvlasrgtwnqnragfpfersqvprfpgnmmietpmqqptvsslganafgkvhgampigpssyptgelgssalspvesqlfstnrgdetsamlssgkvlehdgssntlsdaNRAVqvgrqnsvpgtAMLRTMasrdtgkssvsqtpvfsgmpfkeQQLKQLRAQCLVFLAFRNGLVPKKLHLEIAlgnifpreggnvdgsrRELVDTMkvqssndpssapgvtapygrlgnaretdrippggsssggfleadssskEVENLkmmdksgppadhsihAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLesastrgtlaitnpvndvenghlfigranvasvtginkpmnseinswtgigsqnevprrplpaptvqhelvkdndptqfksfghsgasgnqhanshlssfsirdqwkpvsgtdsdryslipvkdasgmlrhtsqddpkfsdgsrtipvdnsvrngisltteqdeedkslhtdsppapkytmseKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKlkesvsssedisAKTKSVIELKKLQLLGLQRRLRNDFLndffkpittdmDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKyepavenedesdqAKHYLESNEKYYLMAHSIKesvseqptclqggklreYQMSGLRWLVSLYNNQLNgilademglgkTVQVIALICYLMEtkndrgpflvvvpssvlpgweseinfwaprihkivycgppEERRRLFKEKIVHQKFNVLLTTYEYLmnkhdrpklskiQWHYIIIDEGHRIKNASCKLNADLKHyqsshrllltgtplQNNLEELWALLNFLlpnifnssedfsqwfnkpfesngdnspdeallSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENlgsignskgrsvHNSVMELRNicnhpylsqlhaeevdtlipkhylppivrlCGKLEMLDRLlpklkatdhrVLFFSTMTRLLDVMEDYLTFKQYRYLRldghtsggdrgalidkfnqqdspFFIFLLSIRaggvgvnlqaadtviifdtdwnpqvDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLgvanqsitagffdnntsaEDRREYLESLLRECKkeeaapvldddALNDLLARR

MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENemskiepftssrppvapSGAGHDYYQASGTHRSSQSFDHESPSSLdtrsansqsqerqkdgkkastkrkrgdssishepqnenpqqldsrnsvvnprKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVtekpldsanvsnsvpRASNSKFPEEVEVSasgqqqgnsLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSntlsdanravqvgrqnsvpgtAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIAlgnifpreggnvdGSRRELVDTMkvqssndpssapgvtAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKpvsgtdsdryslipvkdasgmlrhtsqddpkfsdgsrtipvdnsvrngisltteqdeedkslhtdsppapkYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNklkesvsssedisakTKSVIELKKLQLLGLQRRLRNDFLndffkpittdmdrlksykkhrhgrrikqlekfeQKMKEERQKRIRERQKEffseieahkerldevfkikrerwrgvnkyvkefhkrkerihrekidriqrekinllkindvegyLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFenemdetqtVSVVEKYEPavenedesdqaKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKvenelpekierlVRCEASAYQKLLMKRVEEnlgsignskgrsVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPklkatdhrvLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAehklgvanqsitagffdnntsaEDRREYLESLLREckkeeaapvldddalndllarr

MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIElkklqllglqrrlrNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLekfeqkmkeerqkrirerqkeFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFlvvvpssvlpGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPlqnnleelwallnfllpnIFNSSEDFSQWFNKPFESNGDNSPDeallseeenllIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEaapvldddalndllaRR

*************FLHKLI********KLATKLYVILQH**************I****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPR*******************************************************************************************************************************LAITNPVNDVENGHLFIGRANVASVTGINK********W****************************************************************************************************************************************KWIMDMQKRKLLVEQNWILKQ******************************VIELKKLQLLGLQRRLRNDFLNDFFKPITTDMD***********************************************ERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQD***********************************************************************KYYLMAHSI*******PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFN*******************ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI*******VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFD****************************************

***********AKFLHKLI****DEPAKLATKLYVILQ**************VISRAMETVINQNGLDME***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RMSTCFN******************VIELKKLQLLGLQRRLRNDFLNDFFKPITT******************************************FSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHK****************************YLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQE****************************************************SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFES***********SEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEE*************HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI************************************DALNDLLARR

MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTS**********************VKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQAS************************************************************SRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEG******************************************SSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMA***********TPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDT************PGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLAT****************AFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTT**************PAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNK*************KTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLK*********RIKQLEKFE*************RQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEP**********AKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARR

*****NVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSR*******************************************************************************************************************************************N****P*GF*V******NFN***SGGQMEHFSSLSGN***************************************************SLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGP****T*ELGSSA*************************************************S*************************FSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFP*************************************************************SSSK*V***KMMDK****************************************************TLA**NPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSG********************************************************SRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKS**********************************KHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESN*DNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARR

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MAAPNNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMSKIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQERQKDGKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNFNMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEVSASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRFPGNMMIETPMQQPTVSSLGANAFGKVHGAMPIGPSSYPTGELGSSALSPVESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRDTGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGNVDGSRRELVDTMKVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSSKEVENLKMMDKSGPPADHSIHAEERKQLATGKLEAEMQSQETAESQAFFTSASQQLESASTRGTLAITNPVNDVENGHLFIGRANVASVTGINKPMNSEINSWTGIGSQNEVPRRPLPAPTVQHELVKDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSLIPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQxxxxxxxxxxxxxxxxxxxxxEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNxxxxxxxxxxxxxxxxxxxxxEAAPVLDDDALNDLLARR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1605	2.2.26 [Sep-21-2011]
Q9UTN6		1199	Chromatin structure-remod	yes	no	0.451	0.604	0.439	1e-179
O94421		1680	SWI/SNF chromatin-remodel	no	no	0.449	0.429	0.425	1e-171
P25439		1638	ATP-dependent helicase br	yes	no	0.456	0.447	0.404	1e-168
P22082		1703	Transcription regulatory	yes	no	0.460	0.433	0.420	1e-167
P32597		1359	Nuclear protein STH1/NPS1	no	no	0.456	0.538	0.421	1e-162
Q6DIC0		1577	Probable global transcrip	yes	no	0.342	0.348	0.514	1e-161
P51531		1590	Probable global transcrip	yes	no	0.342	0.345	0.514	1e-161
P51532		1647	Transcription activator B	no	no	0.347	0.338	0.492	1e-161
A7Z019		1606	Transcription activator B	no	no	0.342	0.342	0.497	1e-160
Q3TKT4		1613	Transcription activator B	no	no	0.342	0.340	0.497	1e-160

>sp\|Q9UTN6\|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1	Back alignment and function desciption

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 340/773 (43%), Positives = 494/773 (63%), Gaps = 48/773 (6%)

Query: 849  SAKTKSVIELKKLQLLGLQRRLRNDFLN--DFFKPITTDMDRLKSYKKHRHGRRIKQLEK 906
            + K  +++ELKKL+L+  Q  LR+  ++     + I   ++R+   +     +  +  E 
Sbjct: 192  TIKRNALVELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEV 251

Query: 907  FEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIH 966
             E++ + +R++R++++Q ++   + AH   ++   K  + R +  N+ V  +H   E+  
Sbjct: 252  LERQQRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEE 311

Query: 967  REKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGS--KLQEAKS 1024
            + + +R  ++++  LK ND E YL+++  AK  R+  LL++T+ YL  L +  K+Q+++ 
Sbjct: 312  QRRAERNAKQRLQALKENDEEAYLKLIDQAKDTRITHLLRQTDHYLDSLAAAVKVQQSQF 371

Query: 1025 MASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPT 1084
              S ++ +MD         +  P  E++ + D           YY +AH+I+E V+EQP+
Sbjct: 372  GESAYDEDMDR--------RMNP--EDDRKID-----------YYNVAHNIREVVTEQPS 410

Query: 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFL 1144
             L GGKL+EYQ+ GL+W++SLYNN LNGILADEMGLGKT+Q I+LI +L+E K   GPFL
Sbjct: 411  ILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFL 470

Query: 1145 VVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204
            V+VP S L  W  E   WAP I KIVY GPP+ R+ L  + + H  F VLLTTYEY++  
Sbjct: 471  VIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIK- 528

Query: 1205 HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS-HRLLLTGTPLQNNLEELWAL 1263
             DRP LS+I+W Y+IIDEGHR+KN   KL   L  Y SS +RL+LTGTPLQNNL ELWAL
Sbjct: 529  -DRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWAL 587

Query: 1264 LNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323
            LNF+LP IFNS + F +WFN PF + G    D+  L+EEE+LL+I RLH+VLRPF+LRRL
Sbjct: 588  LNFVLPRIFNSIKSFDEWFNTPFANTG--GQDKMELTEEESLLVIRRLHKVLRPFLLRRL 645

Query: 1324 KHKVENELPEKIERLVRCEASAYQKLL--------MKRVEENLGSIGNSKGRSVHNSVME 1375
            K  VE ELP+K+E+++RC+ S  Q+ L        M  VE+     G +  + + N+VM+
Sbjct: 646  KKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVED--AKRGKTGIKGLQNTVMQ 703

Query: 1376 LRNICNHPYLSQLHAEEVDTLIPKHY-LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFST 1434
            L+ ICNHP++ +     +D   P  +    + R+ GK E+LDR+LPKL  + HR+L F  
Sbjct: 704  LKKICNHPFVFEDVERSID---PTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQ 760

Query: 1435 MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVN 1494
            MT+++++MEDYL ++Q+RYLRLDG T   DR  L+  FN   +   +FLLS RAGG+G+N
Sbjct: 761  MTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLN 820

Query: 1495 LQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554
            LQ ADTVIIFD+DWNP  DLQAQ RAHRIGQ ++V + R  T ++VEE + A A++KL +
Sbjct: 821  LQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDI 880

Query: 1555 ANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPV---LDDDALNDLLAR 1604
              + I AG FDN ++ E+R  +L SLL     EE       LDDD LN++LAR
Sbjct: 881  DGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEILAR 933

Helicase. Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|O94421\|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2	Back alignment and function description

>sp\|P25439\|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2	Back alignment and function description

>sp\|P22082\|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1	Back alignment and function description

>sp\|P32597\|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STH1 PE=1 SV=1	Back alignment and function description

>sp\|Q6DIC0\|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1	Back alignment and function description

>sp\|P51531\|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2	Back alignment and function description

>sp\|P51532\|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2	Back alignment and function description

>sp\|A7Z019\|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1	Back alignment and function description

>sp\|Q3TKT4\|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1605
224100259		3427	chromatin remodeling complex subunit [Po	0.915	0.428	0.686	0.0
357478577		3312	Helicase swr1 [Medicago truncatula] gi\|3	0.923	0.447	0.642	0.0
357478579		3310	Helicase swr1 [Medicago truncatula] gi\|3	0.923	0.448	0.642	0.0
297736923		2266	unnamed protein product [Vitis vinifera]	0.748	0.530	0.757	0.0
449433367		2086	PREDICTED: uncharacterized protein LOC10	0.736	0.566	0.736	0.0
449495482		2108	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.732	0.557	0.730	0.0
255551623		3502	conserved hypothetical protein [Ricinus	0.536	0.245	0.873	0.0
20197603		3571	putative SNF2 subfamily transcription re	0.507	0.228	0.844	0.0
30683830		3574	ATPase splayed [Arabidopsis thaliana] gi	0.509	0.228	0.845	0.0
30683833		3529	ATPase splayed [Arabidopsis thaliana] gi	0.509	0.231	0.845	0.0

>gi\|224100259\|ref\|XP_002311805.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222851625\|gb\|EEE89172.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 2170 bits (5622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1123/1636 (68%), Positives = 1257/1636 (76%), Gaps = 167/1636 (10%)

Query: 58   METVINQNGLDMEALKSSRLPLTSGSQIGDSSTAQCAGSSSQVAGVVKDSKAGLAENEMS 117
            METVINQ+GLD+EAL+SSRLPLTSG+Q+GDSSTAQ  GSS Q  GV KDSKAG AENE+S
Sbjct: 1    METVINQHGLDIEALRSSRLPLTSGTQMGDSSTAQYGGSS-QAVGVGKDSKAGSAENEIS 59

Query: 118  KIEPFTSSRPPVAPSGAGHDYYQASGTHRSSQSFDHESPSSLDTRSANSQSQER---QKD 174
            KI+ F SSRPPV P  AGHDYYQ SGT RSSQSFDHESPSSLDTRSANSQSQER   QKD
Sbjct: 60   KIDTFASSRPPVGPGTAGHDYYQGSGTQRSSQSFDHESPSSLDTRSANSQSQERGVNQKD 119

Query: 175  GKKASTKRKRGDSSISHEPQNENPQQLDSRNSVVNPRKGKMNKVDAPGGFSVKGAEQSNF 234
            GKKA+ KRKR DSS+  E   +NPQQL+ RN++VNPR+GKMNKVD+PGG+ V+G E ++F
Sbjct: 120  GKKAAAKRKRVDSSLHSEMHGDNPQQLNPRNTIVNPRRGKMNKVDSPGGYPVRGGENTSF 179

Query: 235  NMVPSGGQMEHFSSLSGNMSSILRVKQEGQNVTEKPLDSANVSNSVPRASNSKFPEEVEV 294
            N VP+ GQ+E  SS                                             V
Sbjct: 180  NKVPNSGQLEVSSSF--------------------------------------------V 195

Query: 295  SASGQQQGNSLSSANGVLASRGTWNQNRAGFPFERSQVPRF-----PGNMMIETPMQQPT 349
            SA GQQQG SL SA+  L SRG WNQN+AG P ERS +PRF      GN   E  +QQ  
Sbjct: 196  SA-GQQQGGSLPSAHESLTSRGMWNQNKAGLPLERSHIPRFSSNAVSGNTTAEIQLQQSA 254

Query: 350  VSSLGANAFGKVHGAMPI--------------GPSSYPT----------GELGSSALSPV 385
            +SSLG++AF KVHG MP+              GP  Y +          G + SSA    
Sbjct: 255  ISSLGSSAFSKVHGGMPVTSNPTGPMGELGFAGPVQYSSSEHQKHGLTKGAVASSAEKTS 314

Query: 386  ESQLFSTNRGDETSAMLSSGKVLEHDGSSNTLSDANRAVQVGRQNSVPGTAMLRTMASRD 445
            E   F+ NR D+    LS+GK+LE+ GSSN  ++A++ VQ GRQ S     M+R+ + RD
Sbjct: 315  EGHFFAANRVDDFPTSLSTGKILENGGSSNMFAEASKIVQGGRQTSNSELTMIRSTSPRD 374

Query: 446  TGKSSVSQTPVFSGMPFKEQQLKQLRAQCLVFLAFRNGLVPKKLHLEIALGNIFPREGGN 505
             GKS V Q    SGMPF EQQL+QLRAQCLVFLAFRN L+PKKLHL+IALGN   ++GG 
Sbjct: 375  VGKSPVFQGSALSGMPFNEQQLRQLRAQCLVFLAFRNDLMPKKLHLDIALGNAVSKDGGT 434

Query: 506  VDGSRRELVDTM-KVQSSNDPSSAPGVTAPYGRLGNARETDRIPPGGSSSGGFLEADSSS 564
            +DG R+EL+D   K QSSN+ +S P V    GRL NA+E+D++ PG  S   F++ +   
Sbjct: 435  LDGPRKELIDYKGKAQSSNESTSIPEVLMSCGRLNNAKESDKVLPG--SGARFVDGNYVP 492

Query: 565  KEVENLKMMDKSGPPADHSIHAEERKQ-LATGKLEAEMQSQETAESQAFFTSASQQLESA 623
            KE + LKM++   PP+D  I A+ERK  L+T K +AEMQSQE  ESQ FF SA QQ +SA
Sbjct: 493  KEADTLKMVED--PPSDPLILADERKYLLSTRKPDAEMQSQEAVESQGFFPSAMQQPDSA 550

Query: 624  STRGTLAITNPVNDVENGHLFIGRANVASVTG-INKPMNSEINSWTGIGSQNEVPRRPLP 682
              RG L ++NPV+ ++N  L +G+ + AS T  +NK  N E  SWTGIG+Q+      LP
Sbjct: 551  --RGGLLLSNPVDGMDNTCLHVGKTDHASSTSFVNKQANLEAVSWTGIGNQS------LP 602

Query: 683  APTVQHELV---KDNDPTQFKSFGHSGASGNQHANSHLSSFSIRDQWKPVSGTDSDRYSL 739
              +VQ  LV   KDN  +QF S G+S ASGN+   +     S+ ++W P SG D+D  ++
Sbjct: 603  FRSVQLGLVPDRKDNASSQFHSLGNSIASGNKSGYNGFYCISLNERWDPRSGVDNDHPTV 662

Query: 740  IPVKDASGMLRHTSQDDPKFSDGSRTIPVDNSVRNGISLTTEQDEEDKSLHTDSPPAPKY 799
              +KDA    R +        DG + +PVD S+RNGIS TTEQD+EDKS  TDS P+PKY
Sbjct: 663  ALMKDADDDSRLSEFQTRYAPDGYKVVPVDVSLRNGISFTTEQDDEDKSASTDSQPSPKY 722

Query: 800  TMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELK 859
            TMSEKWIMD Q++KLL EQNW+LKQQ+TKQR+STCF KLKE+VS S+DISAKTKSVIELK
Sbjct: 723  TMSEKWIMDHQRKKLLTEQNWVLKQQRTKQRISTCFYKLKETVSFSKDISAKTKSVIELK 782

Query: 860  KLQLLGLQRRLRNDFLNDFFKPITTDMDRLKSYKKHRHGRRIKQLEKFEQKMKEERQKRI 919
            KLQLL LQRRLR+DFLNDFFKPIT DMDRLKS KKH+HGRRI+QLEK+EQKMKEERQKRI
Sbjct: 783  KLQLLELQRRLRSDFLNDFFKPITNDMDRLKSCKKHKHGRRIRQLEKYEQKMKEERQKRI 842

Query: 920  RERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKIN 979
            RERQKEFF EIE HKERLD+VFKIKRERW+G NKYVKEFHKRKERIHREKIDRIQREKIN
Sbjct: 843  RERQKEFFDEIEVHKERLDDVFKIKRERWKGFNKYVKEFHKRKERIHREKIDRIQREKIN 902

Query: 980  LLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTV 1039
            LLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKLQEAKSMAS FEN+MDE++T 
Sbjct: 903  LLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSMASRFENDMDESRTA 962

Query: 1040 SVVEKYEPAVENEDESDQAK------------------HYLESNEKYYLMAHSIKESVSE 1081
            +VVEK E A ENEDESDQAK                  HY+ESNEKYYLMAHS+KES++E
Sbjct: 963  TVVEKNETAAENEDESDQAKAGCLAFSGFFCFFWGPFYHYMESNEKYYLMAHSVKESIAE 1022

Query: 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG 1141
            QPTCLQGGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRG
Sbjct: 1023 QPTCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRG 1082

Query: 1142 PFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1201
            PFLVVVPSSVLPGWE+EINFWAP I +I+Y GPPEERRRLFKEKIVHQKFNVLLTTYEYL
Sbjct: 1083 PFLVVVPSSVLPGWETEINFWAPGILRIIYSGPPEERRRLFKEKIVHQKFNVLLTTYEYL 1142

Query: 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELW 1261
            MNKHDRPKLSKI WHYIIIDEGHRIKNASCKLNA+LKHYQSSHRLLLTGTPLQNNLEELW
Sbjct: 1143 MNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAELKHYQSSHRLLLTGTPLQNNLEELW 1202

Query: 1262 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321
            ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNS DEALLSEEENLLIINRLHQVLRPFVLR
Sbjct: 1203 ALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSADEALLSEEENLLIINRLHQVLRPFVLR 1262

Query: 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICN 1381
            RLKHKVENELPEKIERLVRCEASAYQKLLMKRVE+NLGSIGN K RSVHNSVMELRNICN
Sbjct: 1263 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEDNLGSIGNPKARSVHNSVMELRNICN 1322

Query: 1382 HPYLSQLHAEE-----VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMT 1436
            HPYLSQLHA+E     VDTLIPKH+LPPI+RLCGKLEMLDRLLPKLKATDHRVLFFSTMT
Sbjct: 1323 HPYLSQLHADEACSSLVDTLIPKHFLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMT 1382

Query: 1437 RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL------------ 1484
            RLLDVME+YLT+KQYRYLRLDGHTSGGDRG+LID FNQQDSP+FIFLL            
Sbjct: 1383 RLLDVMEEYLTWKQYRYLRLDGHTSGGDRGSLIDSFNQQDSPYFIFLLRSFILTNQIFPS 1442

Query: 1485 ----------------------------SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA 1516
                                        SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA
Sbjct: 1443 LCFCPGDSLSCMLGVLDALFGVYQGVVVSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQA 1502

Query: 1517 QARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY 1576
            QARAHRIGQKR+        VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY
Sbjct: 1503 QARAHRIGQKRE--------VQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREY 1554

Query: 1577 LESLLRECKKEEAAPV 1592
            LESLLRECKKEEAAPV
Sbjct: 1555 LESLLRECKKEEAAPV 1570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357478577\|ref\|XP_003609574.1\| Helicase swr1 [Medicago truncatula] gi\|355510629\|gb\|AES91771.1\| Helicase swr1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357478579\|ref\|XP_003609575.1\| Helicase swr1 [Medicago truncatula] gi\|355510630\|gb\|AES91772.1\| Helicase swr1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297736923\|emb\|CBI26124.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449433367\|ref\|XP_004134469.1\| PREDICTED: uncharacterized protein LOC101206586, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449495482\|ref\|XP_004159854.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206586, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255551623\|ref\|XP_002516857.1\| conserved hypothetical protein [Ricinus communis] gi\|223543945\|gb\|EEF45471.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|20197603\|gb\|AAD29835.2\| putative SNF2 subfamily transcription regulator [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30683830\|ref\|NP_850116.1\| ATPase splayed [Arabidopsis thaliana] gi\|330253006\|gb\|AEC08100.1\| ATPase splayed [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30683833\|ref\|NP_850117.1\| ATPase splayed [Arabidopsis thaliana] gi\|330253005\|gb\|AEC08099.1\| ATPase splayed [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1605
TAIR\|locus:2062840		3574	SYD "SPLAYED" [Arabidopsis tha	0.499	0.224	0.756	0.0
ZFIN\|ZDB-GENE-030131-5964		1568	smarca2 "SWI/SNF related, matr	0.342	0.350	0.470	2.5e-148
UNIPROTKB\|P51531		1590	SMARCA2 "Probable global trans	0.347	0.350	0.461	2.2e-147
MGI\|MGI:99603		1577	Smarca2 "SWI/SNF related, matr	0.347	0.353	0.461	5.9e-147
UNIPROTKB\|A5PKK5		1554	SMARCA2 "SMARCA2 protein" [Bos	0.347	0.358	0.461	3.2e-146
DICTYBASE\|DDB_G0271052		3247	snf2b "SNF2-related protein Sn	0.320	0.158	0.470	2e-145
UNIPROTKB\|A7Z019		1606	SMARCA4 "Transcription activat	0.347	0.346	0.455	2.4e-144
UNIPROTKB\|E1C2F7		1546	E1C2F7 "Uncharacterized protei	0.349	0.362	0.460	6.3e-144
UNIPROTKB\|D4A4J2		1506	Smarca2 "Protein Smarca2" [Rat	0.347	0.369	0.461	1.3e-143
UNIPROTKB\|E9PTG1		1597	Smarca2 "Protein Smarca2" [Rat	0.347	0.348	0.461	1.3e-143

TAIR\|locus:2062840 SYD "SPLAYED" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3162 (1118.1 bits), Expect = 0., Sum P(4) = 0.
 Identities = 610/806 (75%), Positives = 677/806 (83%)

Query:   783 DEEDKSLHTDSPPAPKYTMSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESV 842
             DEE+ +L     P+PKYTMS+KWIM  Q ++LLV+++W LKQQK  Q + + FN+LKESV
Sbjct:   451 DEEEGNLQ----PSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESV 506

Query:   843 SSSEDISAKTKSVIEXXXXXXXXXXXXXXNDFLNDFFKPITTDMDRLKSYKKHRHGRRIK 902
             S S+DISAKTKSVIE              ++F+ +FFKPI TD++ LKSYKKH+HGRRIK
Sbjct:   507 SLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIK 566

Query:   903 QLXXXXXXXXXXXXXXXXXXXXXFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRK 962
             QL                     FF  +E HKE+L+++FK++RER +G N+Y KEFHKRK
Sbjct:   567 QLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRK 626

Query:   963 ERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEA 1022
             ER+HREKID+IQREKINLLKINDVEGYLRMVQDAKSDRV +LLKETEKYLQKLGSKL+EA
Sbjct:   627 ERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEA 686

Query:  1023 KSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQ 1082
             K + S FENE DET+T +  +  E  +ENEDESDQAKHYLESNEKYYLMAHSIKE+++EQ
Sbjct:   687 KLLTSRFENEADETRTSNATDD-ETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQ 745

Query:  1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGP 1142
             P+ L GGKLREYQM+GLRWLVSLYNN LNGILADEMGLGKTVQVI+LICYLMETKNDRGP
Sbjct:   746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805

Query:  1143 FXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM 1202
             F          GW+SEINFWAP IHKIVYCG P+ERR+LFKE+IVHQKFNVLLTTYEYLM
Sbjct:   806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865

Query:  1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXX 1262
             NKHDRPKLSKI WHYIIIDEGHRIKNASCKLNADLKHY SSHRLLLTGTP          
Sbjct:   866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925

Query:  1263 XXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRR 1322
                     IFNSSEDFSQWFNKPF+SNG++S +           IINRLHQVLRPFVLRR
Sbjct:   926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985

Query:  1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNH 1382
             LKHKVENELPEKIERL+RCEASAYQKLLMKRVE+NLGSIGN+K R+VHNSVMELRNICNH
Sbjct:   986 LKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNH 1045

Query:  1383 PYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM 1442
             PYLSQLH+EEV+ +IPKH+LPPIVRLCGKLEMLDR+LPKLKATDHRVLFFSTMTRLLDVM
Sbjct:  1046 PYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVM 1105

Query:  1443 EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502
             EDYLT K Y+YLRLDG TSGGDRGALID FN+  SPFFIFLLSIRAGGVGVNLQAADTVI
Sbjct:  1106 EDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVI 1165

Query:  1503 IFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562
             +FDTDWNPQVDLQAQARAHRIGQK+DVLVLRFETV +VEEQVRASAEHKLGVANQSITAG
Sbjct:  1166 LFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAG 1225

Query:  1563 FFDNNTSAEDRREYLESLLRECKKEE 1588
             FFDNNTSAEDR+EYLESLLRE KKEE
Sbjct:  1226 FFDNNTSAEDRKEYLESLLRESKKEE 1251

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009908 "flower development" evidence=IMP

GO:0016887 "ATPase activity" evidence=ISS

GO:0003682 "chromatin binding" evidence=IPI

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0043044 "ATP-dependent chromatin remodeling" evidence=NAS

GO:0040029 "regulation of gene expression, epigenetic" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

ZFIN\|ZDB-GENE-030131-5964 smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|P51531 SMARCA2 "Probable global transcription activator SNF2L2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:99603 Smarca2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A5PKK5 SMARCA2 "SMARCA2 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0271052 snf2b "SNF2-related protein Snf2a" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|A7Z019 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C2F7 E1C2F7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A4J2 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTG1 Smarca2 "Protein Smarca2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1605
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-154
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	1e-105
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	1e-105
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	5e-31
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	3e-26
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	7e-26
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	8e-20
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	9e-20
COG1061		442	COG1061, SSL2, DNA or RNA helicases of superfamily	4e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
pfam04851		100	pfam04851, ResIII, Type III restriction enzyme, re	3e-04
smart00951		36	smart00951, QLQ, QLQ is named after the conserved	4e-04
pfam03879		105	pfam03879, Cgr1, Cgr1 family	7e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.001
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	0.004

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

 Score =  496 bits (1279), Expect = e-154
 Identities = 261/612 (42%), Positives = 360/612 (58%), Gaps = 60/612 (9%)

Query: 944  KRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNK 1003
            KRE+ R     +KE  K+K    +++I +I  E+ N     D+    +        R+  
Sbjct: 59   KREKAR-----LKELKKQK----KQEIQKI-LEQQNAAIDADMNNKGK-------GRLKY 101

Query: 1004 LLKETEKYLQKL-GSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVENEDESDQAKHYL 1062
            LL++TE +     G +   AK       +    T+            E EDE      YL
Sbjct: 102  LLQQTEIFAHFAKGDQSASAKKAKGRGRHASKLTE------------EEEDEE-----YL 144

Query: 1063 ESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGK 1122
            +  E     +   +  V  QP+C++G K+R+YQ++GL WL+ LY N +NGILADEMGLGK
Sbjct: 145  KEEEDGLGGSGGTRLLV--QPSCIKG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGK 201

Query: 1123 TVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLF 1182
            T+Q I+L+ YL E +   GP +VV P S L  W +EI  + P +  + + G PEER    
Sbjct: 202  TLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQR 261

Query: 1183 KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242
            +E +V  KF+V +T++E  M   ++  L +  W YIIIDE HRIKN +  L+  ++ + +
Sbjct: 262  EELLVAGKFDVCVTSFE--MAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFST 319

Query: 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302
            ++RLL+TGTPLQNNL ELWALLNFLLP IF+S+E F +WF               +  E 
Sbjct: 320  NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWF--------------QISGEN 365

Query: 1303 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG 1362
            +   ++ +LH+VLRPF+LRRLK  VE  LP K E +++   S  QK   K + +    + 
Sbjct: 366  DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVV 425

Query: 1363 NSKG--RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLP 1420
            N+ G  + + N  M+LR  CNHPYL Q  AE         +L   V   GK+ +LD+LLP
Sbjct: 426  NAGGERKRLLNIAMQLRKCCNHPYLFQ-GAEPGPPYTTGEHL---VENSGKMVLLDKLLP 481

Query: 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480
            KLK  D RVL FS MTRLLD++EDYL ++ Y+Y R+DG+T G DR A ID FN+  S  F
Sbjct: 482  KLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKF 541

Query: 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540
            +FLLS RAGG+G+NL  AD VI++D+DWNPQVDLQAQ RAHRIGQK++V V RF T  T+
Sbjct: 542  VFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601

Query: 1541 EEQVRASAEHKL 1552
            EE+V   A  KL
Sbjct: 602  EEKVIERAYKKL 613

Length = 1033

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit	Back alignment and domain information

>gnl\|CDD\|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif	Back alignment and domain information

>gnl\|CDD\|146486 pfam03879, Cgr1, Cgr1 family	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1605
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.97
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.97
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.96
PHA02558		501	uvsW UvsW helicase; Provisional	99.96
KOG0354		746	consensus DEAD-box like helicase [General function	99.94
PTZ00110		545	helicase; Provisional	99.94
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.94
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.94
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.94
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.93
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.93
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.93
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.93
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.92
PTZ00424		401	helicase 45; Provisional	99.92
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.92
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.92
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.92
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.9
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.89
KOG1123		776	consensus RNA polymerase II transcription initiati	99.89
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.89
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.89
PRK13767		876	ATP-dependent helicase; Provisional	99.89
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.89
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.88
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.88
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.87
PRK10689		1147	transcription-repair coupling factor; Provisional	99.86
PRK02362		737	ski2-like helicase; Provisional	99.85
PRK01172		674	ski2-like helicase; Provisional	99.84
PRK00254		720	ski2-like helicase; Provisional	99.83
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.83
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.82
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.8
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.8
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.77
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.77
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.77
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.77
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.77
COG4096		875	HsdR Type I site-specific restriction-modification	99.77
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.76
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.76
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.76
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.75
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.75
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.75
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.74
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.73
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.73
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.73
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.73
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.72
PRK09401		1176	reverse gyrase; Reviewed	99.72
PHA02653		675	RNA helicase NPH-II; Provisional	99.72
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.71
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.7
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.69
COG1204		766	Superfamily II helicase [General function predicti	99.69
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.68
COG1205		851	Distinct helicase family with a unique C-terminal	99.67
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.65
PRK05580		679	primosome assembly protein PriA; Validated	99.65
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.65
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.64
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.64
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.64
KOG4284		980	consensus DEAD box protein [Transcription]	99.64
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.62
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.61
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.61
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.6
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.6
PRK14701		1638	reverse gyrase; Provisional	99.59
COG4889		1518	Predicted helicase [General function prediction on	99.58
PRK09694		878	helicase Cas3; Provisional	99.57
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.54
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.54
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.53
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.52
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.52
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.51
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.5
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.5
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.5
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.49
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.48
COG1202		830	Superfamily II helicase, archaea-specific [General	99.48
PRK05298		652	excinuclease ABC subunit B; Provisional	99.48
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.45
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.45
KOG0327		397	consensus Translation initiation factor 4F, helica	99.45
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.43
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.42
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.42
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.36
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.35
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.35
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.34
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.33
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.32
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.27
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.27
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.26
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.2
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.18
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.12
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.11
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.03
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.01
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.97
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	98.95
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	98.94
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.92
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.87
COG0610		962	Type I site-specific restriction-modification syst	98.87
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.84
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	98.82
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.79
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	98.78
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.74
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.74
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.62
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.62
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.59
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.58
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.57
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.55
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.46
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.45
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	98.44
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	98.36
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	98.28
PRK15483		986	type III restriction-modification system StyLTI en	98.27
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.26
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	98.25
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	98.1
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	98.09
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	98.05
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	98.0
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	98.0
PF07529		73	HSA: HSA; InterPro: IPR006562 This domain of unkno	97.97
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	97.95
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	97.92
PF13871		278	Helicase_C_4: Helicase_C-like	97.88
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.86
smart00573		73	HSA domain in helicases and associated with SANT d	97.78
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.77
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.69
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	97.45
PRK10536		262	hypothetical protein; Provisional	97.43
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.26
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.22
COG3587		985	Restriction endonuclease [Defense mechanisms]	97.05
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	96.52
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.51
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.48
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.47
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	96.46
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.42
PRK14873		665	primosome assembly protein PriA; Provisional	96.35
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	96.31
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	96.26
KOG1131		755	consensus RNA polymerase II transcription initiati	96.25
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	96.2
TIGR00376		637	DNA helicase, putative. The gene product may repre	96.11
KOG1803		649	consensus DNA helicase [Replication, recombination	96.09
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	95.64
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.47
PF13892		139	DBINO: DNA-binding domain	95.05
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	94.91
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	94.67
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	94.19
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	94.1
PRK10875		615	recD exonuclease V subunit alpha; Provisional	93.59
PRK04296		190	thymidine kinase; Provisional	93.55
KOG1133		821	consensus Helicase of the DEAD superfamily [Replic	93.52
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	93.52
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	93.46
smart00382		148	AAA ATPases associated with a variety of cellular	93.44
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	93.35
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	93.35
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	93.28
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	93.13
PLN03025		319	replication factor C subunit; Provisional	92.66
KOG1805		1100	consensus DNA replication helicase [Replication, r	92.44
PRK12402		337	replication factor C small subunit 2; Reviewed	91.88
PRK09112		351	DNA polymerase III subunit delta'; Validated	91.52
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	91.25
PRK06526		254	transposase; Provisional	91.2
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	91.19
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	90.97
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	90.83
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	90.38
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	90.37
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	90.13
PRK07952		244	DNA replication protein DnaC; Validated	90.01
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	89.61
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	89.53
PRK08181		269	transposase; Validated	89.42
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	89.22
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	88.77
CHL00181		287	cbbX CbbX; Provisional	88.73
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	88.72
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	88.7
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	88.65
PHA02533		534	17 large terminase protein; Provisional	88.44
PF13245		76	AAA_19: Part of AAA domain	88.44
PRK08769		319	DNA polymerase III subunit delta'; Validated	88.35
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	88.1
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	88.09
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	88.01
PRK06835		329	DNA replication protein DnaC; Validated	87.82
PTZ00112		1164	origin recognition complex 1 protein; Provisional	87.8
PF13173		128	AAA_14: AAA domain	87.71
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	87.69
PRK08116		268	hypothetical protein; Validated	87.67
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	87.5
PRK13889		988	conjugal transfer relaxase TraA; Provisional	87.21
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	87.16
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	86.99
PRK07940		394	DNA polymerase III subunit delta'; Validated	86.9
PHA02544		316	44 clamp loader, small subunit; Provisional	86.77
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	86.62
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	86.51
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	86.02
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	85.92
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	85.66
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	85.63
PRK08727		233	hypothetical protein; Validated	85.57
TIGR00595		505	priA primosomal protein N'. All proteins in this f	85.35
PRK05707		328	DNA polymerase III subunit delta'; Validated	85.32
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	85.25
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	85.24
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	84.24
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	84.14
PRK05580		679	primosome assembly protein PriA; Validated	84.04
PRK00440		319	rfc replication factor C small subunit; Reviewed	84.02
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	83.96
PRK00149		450	dnaA chromosomal replication initiation protein; R	83.93
KOG0991		333	consensus Replication factor C, subunit RFC2 [Repl	83.85
PRK08084		235	DNA replication initiation factor; Provisional	83.58
KOG0442		892	consensus Structure-specific endonuclease ERCC1-XP	83.54
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	83.37
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	83.34
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	83.29
PRK04195		482	replication factor C large subunit; Provisional	83.25
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	83.09
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	82.42
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	82.38
PRK00411		394	cdc6 cell division control protein 6; Reviewed	82.2
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	81.64
PRK14974		336	cell division protein FtsY; Provisional	81.58
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	81.53
PRK08058		329	DNA polymerase III subunit delta'; Validated	81.46
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	81.1
PHA03368		738	DNA packaging terminase subunit 1; Provisional	80.86
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	80.71
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	80.53
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	80.52
PRK14088		440	dnaA chromosomal replication initiation protein; P	80.5
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	80.28
PRK06871		325	DNA polymerase III subunit delta'; Validated	80.09

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

Probab=100.00  E-value=2e-147  Score=1345.86  Aligned_cols=767  Identities=49%  Similarity=0.799  Sum_probs=692.4

Q ss_pred             hhhHHHHH--HHhHHHHHHHHHHHhhhccCCCcChhhhhHHHHHHHHhhchHHHHHHHHHHHHHhhcccccch-hhhhhh
Q 000377          816 VEQNWILK--QQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDM-DRLKSY  892 (1605)
Q Consensus       816 ~~~~~~l~--~~r~~~rI~~ri~eL~e~~~~~~~~~~k~k~~ie~~~l~ll~~Q~~~r~~~~~~~~~~~~~~~-~~~~~~  892 (1605)
                      +||++++.  +.++..||..+++++++.+... ..+.|++|.+|+++|+|+.+|+++|..+++++....+.+. ....+|
T Consensus       128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~-~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~~~n~~~~  206 (1157)
T KOG0386|consen  128 LDQQNINPMQQARIQFRMQAQLQELQQLARSL-MGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSETALNPKAF  206 (1157)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHhhhcc-hHHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccccccCHHHH
Confidence            33444433  3489999999999998765544 4467999999999999999999999999998766554432 234566


Q ss_pred             hhhch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHhh
Q 000377          893 KKHRH--GRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI  970 (1605)
Q Consensus       893 ~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  970 (1605)
                      ++.+.  .+.++.+|+||++|+.|.+++++++|.+||.+++.|.+++.++++....+..+++++|..||.+.+|++++++
T Consensus       207 ~R~~~q~~~~~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~  286 (1157)
T KOG0386|consen  207 KRGKRQTLSEARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRI  286 (1157)
T ss_pred             hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            66543  4788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccccHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccC
Q 000377          971 DRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050 (1605)
Q Consensus       971 ~r~~~~r~~~l~~~d~e~y~~l~~~~k~~rl~~LL~qt~~y~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~~~~ 1050 (1605)
                      +|++++|+++|+.||+|+|++|++++|+.||++||+||++|+.+|+..|..++........+.|..   .+.   ..+-+
T Consensus       287 ~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~---~i~---~~ak~  360 (1157)
T KOG0386|consen  287 DRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSENPDANSASDIS---GIS---GSAKA  360 (1157)
T ss_pred             HHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhccccccchhhhhh---hhh---hhhcc
Confidence            999999999999999999999999999999999999999999999999998875211111111110   011   11111


Q ss_pred             CcchhHHHHHHHHhhHHHHHhhhhccccccCCCCccCCCCccHHHHHHHHHHHHHhhcCCCeEEEcCCCCcHHHHHHHHH
Q 000377         1051 NEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI 1130 (1605)
Q Consensus      1051 ~ede~~~~~~~~e~~~kyy~lah~i~e~v~~qP~~L~gg~LRpYQleGL~wLlsL~~n~~nGILADEMGLGKTIqAIALI 1130 (1605)
                      ++++      ..++..+||.++|.++|.+..||+++.||+|++||+.||+||++||+|++|||||||||||||+|+|++|
T Consensus       361 ~~~d------~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi  434 (1157)
T KOG0386|consen  361 DVDD------HAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI  434 (1157)
T ss_pred             hhhh------hhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH
Confidence            1111      4567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCEEEEecCCcccchHHHHHHhCCCceEEEEcCChhHHHHHHHhhhhcCCccEEEEcHHHHhhccCCCcc
Q 000377         1131 CYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210 (1605)
Q Consensus      1131 ~~Lle~k~~~gP~LIVvP~SLL~nW~~Ef~KwaP~l~vivy~Gs~~~R~~l~~~~i~~~~fdVVITTYe~L~k~~D~~~L 1210 (1605)
                      +|+++.+...||+|||||+++|.||..||.+|+|++..++|+|++..|..+.. ++..++|+|++|||+++++  |+..|
T Consensus       435 tYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~-qir~gKFnVLlTtyEyiik--dk~lL  511 (1157)
T KOG0386|consen  435 TYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTK-QQRHGKFNVLLTTYEYIIK--DKALL  511 (1157)
T ss_pred             HHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHH-HHhcccceeeeeeHHHhcC--CHHHH
Confidence            99999999999999999999999999999999999999999999999988764 5566999999999999999  88999


Q ss_pred             cccCccEEEEecCccccCccchHHHHHH-hhhccceecccccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhcccccCC
Q 000377         1211 SKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESN 1289 (1605)
Q Consensus      1211 ~ki~wd~VIIDEAHriKN~~SKlsraL~-~L~a~~RLLLTGTPlqNnl~ELwsLLnFL~P~if~s~~~F~e~F~kP~e~~ 1289 (1605)
                      .+++|.||||||+|+|||+.|+++..+. .|.+.+||+|||||+||++.|||+|||||.|.||++..+|.+||+.||...
T Consensus       512 sKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFant  591 (1157)
T KOG0386|consen  512 SKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANT  591 (1157)
T ss_pred             hccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhc
Confidence            9999999999999999999999999998 789999999999999999999999999999999999999999999999998


Q ss_pred             CCCCchhhhhhHHHHHHHHHHHHHHhhHHHHHHhhhhHhhcCccceEEEEEecccHHHHHHHHHHHHHhhcc-----CCC
Q 000377         1290 GDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-----GNS 1364 (1605)
Q Consensus      1290 g~~~~~e~~Lseee~~~iI~RL~kvLrPFlLRRtKkdVe~eLP~K~E~vI~~eLS~~Qk~LYk~I~~~l~~~-----~~~ 1364 (1605)
                      |+    ..++++++.+++|+|||++|+||+|||+|++|+.+||+|++.+++|.||++|+.+|+.+.+.-...     +..
T Consensus       592 Ge----k~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~  667 (1157)
T KOG0386|consen  592 GE----KVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKK  667 (1157)
T ss_pred             CC----cccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccc
Confidence            83    467899999999999999999999999999999999999999999999999999999998654322     445


Q ss_pred             CCcchhHHHHHHHHHhcCccccchhhhhhhhcCCCCCCChhhhhccHHHHHHHHHHHhhcCCCeEEEEEccHHHHHHHHH
Q 000377         1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED 1444 (1605)
Q Consensus      1365 k~~~lln~L~qLRkicnHP~L~~~~~eeid~~i~~~~~~~lvr~SgKle~L~~LL~kL~a~g~KVLIFSQft~~LdiLe~ 1444 (1605)
                      ..+.++|.+|+||++|||||+|....+.+....   ....+|+.|||+++|+++|++|++.|||||+|||||.++++|++
T Consensus       668 g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~---~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEd  744 (1157)
T KOG0386|consen  668 GYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY---DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILED  744 (1157)
T ss_pred             cchhhhhHhHHHHHhcCCchhhhhhcccccccc---ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHH
Confidence            567899999999999999999854433332221   12589999999999999999999999999999999999999999


Q ss_pred             HHhhcCceEEEEeCCCCHHHHHHHHHHHhCCCCCeEEEEEeccccccccCcccCCEEEEEcCCCChhhHHHHhhhhcccC
Q 000377         1445 YLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1524 (1605)
Q Consensus      1445 ~L~~~GikylrLdGsts~eERqeiId~FN~gds~~~VfLLSTrAGGeGLNLq~ADtVIiyDp~WNP~~d~QAiGRAhRIG 1524 (1605)
                      ||..++++|+++||+|+.++|..+++.||.++++||+||+||+|||+|||||+|||||+||++|||+++.||.+||||||
T Consensus       745 yL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig  824 (1157)
T KOG0386|consen  745 YLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG  824 (1157)
T ss_pred             HHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhhccCccCCCCCHHHHHHHHHHHHHHHhhhhcCCCCChHHHHHHHhc
Q 000377         1525 QKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLAR 1604 (1605)
Q Consensus      1525 QkKeV~VyRLIt~~TIEEkIlera~~Kl~L~~kVI~aG~fd~~~s~eE~~e~Le~LLee~~~~e~~~v~dDdeln~lLAR 1604 (1605)
                      |+++|+|+|+++.++|||+|++.+..|++++++||++|.||++++.++|+++|+.+++....++..++.||++||+||||
T Consensus       825 q~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~lar  904 (1157)
T KOG0386|consen  825 QKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLAR  904 (1157)
T ss_pred             chhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999998877777889999999999999


Q ss_pred             C
Q 000377         1605 R 1605 (1605)
Q Consensus      1605 ~ 1605 (1605)
                      +
T Consensus       905 s  905 (1157)
T KOG0386|consen  905 S  905 (1157)
T ss_pred             c
Confidence            5

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes []	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>smart00573 HSA domain in helicases and associated with SANT domains	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PF13892 DBINO: DNA-binding domain	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PHA03368 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1605
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		4e-92
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		9e-45
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		7e-44
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		2e-42
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		2e-17

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800