Citrus Sinensis ID: 000379
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1604 | 2.2.26 [Sep-21-2011] | |||||||
| Q5N870 | 1651 | Endoribonuclease Dicer ho | yes | no | 0.947 | 0.920 | 0.496 | 0.0 | |
| Q9LXW7 | 1580 | Endoribonuclease Dicer ho | yes | no | 0.934 | 0.948 | 0.496 | 0.0 | |
| Q7XD96 | 1637 | Endoribonuclease Dicer ho | no | no | 0.953 | 0.934 | 0.477 | 0.0 | |
| Q8LMR2 | 1883 | Endoribonuclease Dicer ho | no | no | 0.879 | 0.749 | 0.294 | 0.0 | |
| P84634 | 1702 | Dicer-like protein 4 OS=A | no | no | 0.880 | 0.829 | 0.292 | 1e-174 | |
| A7LFZ6 | 1657 | Endoribonuclease Dicer ho | no | no | 0.829 | 0.803 | 0.316 | 1e-169 | |
| Q3EBC8 | 1388 | Endoribonuclease Dicer ho | no | no | 0.756 | 0.873 | 0.311 | 1e-164 | |
| Q10HL3 | 1410 | Endoribonuclease Dicer ho | no | no | 0.761 | 0.865 | 0.303 | 1e-163 | |
| Q69LX2 | 1377 | Endoribonuclease Dicer ho | no | no | 0.745 | 0.868 | 0.291 | 1e-149 | |
| Q9SP32 | 1909 | Endoribonuclease Dicer ho | no | no | 0.486 | 0.409 | 0.339 | 1e-122 |
| >sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1512 bits (3914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1656 (49%), Positives = 1061/1656 (64%), Gaps = 137/1656 (8%)
Query: 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
+F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+ + ++ K+IIFLAPT
Sbjct: 29 DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
V LV QQ +VI +HTDFEVE+YYGAKGVD+W WQ++I+K V+VMTPQ+ L ALR A
Sbjct: 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
FL LD+V ++ DECHHATGNHPYT+IMKEFYHKS++KP VFGMTASPV+RKG+SS +DC
Sbjct: 149 FLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDC 208
Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
EGQ ELE+ LD++++T+ D+ E+E VPSAKE CR+YD C DL +L V SK+D
Sbjct: 209 EGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYD 268
Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK--- 339
A +++LQ + + YKD DD K +++LS AKI YCLD++GLICA EA KIC+E+
Sbjct: 269 ALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQE 328
Query: 340 ------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
V+ A ++ ++ ++S F EE LH+I L + L+
Sbjct: 329 KGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCV 388
Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
+A GYIS KL+EL+Q+F SF S C+IFV+R I A+V++R +KK+ L H TV++
Sbjct: 389 EAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSF 448
Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
LTG +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRFDLP+T S
Sbjct: 449 LTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRS 508
Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV 567
Y+QSRGRARQ +SQ+ILM+ERGN+KQ + + I+RSE S+ A SR+
Sbjct: 509 YVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNE 568
Query: 568 KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
+ Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++ ++ Y C L LP +
Sbjct: 569 EINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPS 628
Query: 628 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 687
A Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL SVE+P I KN+
Sbjct: 629 AVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--IVSKNKG-T 685
Query: 688 GAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 746
G GTTKRKELHGTT I A SG W +K + L +YK NF C +IYS FVLLI++ L
Sbjct: 686 GIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLP 745
Query: 747 NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSK-SS 805
++V E++LYL K VK +VSS G + LDA QM +AK FQ L FNGLFGKLF +SK +
Sbjct: 746 DEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPN 805
Query: 806 GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK----- 860
REF L +E +W+ + +YLLLP N D + INWS I+ A+ V+ ++
Sbjct: 806 APREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVKLMRRIYSE 862
Query: 861 -EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR 919
++ LG + N G D+IHLAN S A +LKDMVVLA+HTG+
Sbjct: 863 NKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMVVLAVHTGK 905
Query: 920 IYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
IY+ ++I S +S FDG +D +TF YF +KYGIVL HP QPLL LK SHNPH
Sbjct: 906 IYTALDI-TELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPH 964
Query: 977 NLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR 1034
NLL + F D G + +G K VHMPPELL+ +D+P+ +++S YL P++M R
Sbjct: 965 NLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYR 1024
Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
+ESL LASQLR EI N I S LILEA+TTL C E FSMERLELLGDSVLKYAVSC
Sbjct: 1025 IESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSC 1082
Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
HLFL +P K EGQLS+ R +CN+TL+KLG +R +QGY+RD+AFDPRRW+APGQLS+RP
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRP 1142
Query: 1155 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214
PCEC V + EV D D +V+GK CD GHRWM SKTIADC EA+IGAYY GGGL
Sbjct: 1143 SPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGL 1201
Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
AA+ ++KWLGI A++E L+ I AS+++Y+P+ N + +E+K+GY F+VK LL EA
Sbjct: 1202 RAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEA 1261
Query: 1275 ITHASVQEF---YCYQ-------------------------------------------- 1287
+TH S QE YCY+
Sbjct: 1262 LTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFA 1321
Query: 1288 ------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPKALGDLLES 1336
N + LQH S LLL QITEYV S K +D P K PK LGD++ES
Sbjct: 1322 QVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPKVLGDIVES 1379
Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1396
I GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C GYFV NC +G
Sbjct: 1380 IAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQG 1439
Query: 1397 EMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD 1456
+ V A L +QLK+VLLV +G + RK AK A+S LLK LE I K AS T +
Sbjct: 1440 DTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKH 1499
Query: 1457 CRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1508
C T D P K + A DS + +G P+ + KG
Sbjct: 1500 CGSTNPFNNLHVDAMDTQTPKPTKEKN-------AADS-RNISDPLLGKPLHVIVKTSKG 1551
Query: 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFVSKITLHIP 1563
GPR +L++LCK + WPMPT E +E + C +K T + +F S ITLHIP
Sbjct: 1552 GPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIP 1610
Query: 1564 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKI 1599
+ GD RADKKSS DSAAL +L+EL+R+G +
Sbjct: 1611 NADVISLTGDGRADKKSSQDSAALFLLYELQRRGTL 1646
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Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: - |
| >sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1501 bits (3885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1659 (49%), Positives = 1065/1659 (64%), Gaps = 160/1659 (9%)
Query: 6 NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
NSLKR F E+ D SS +G Y+LKV+EVAK RN IAV
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63
Query: 66 LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
L TG K+ I LIK + S+ K+LIIFLAPTV+LV QQ IR + +VEEY+
Sbjct: 64 LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYF 120
Query: 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 121 GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 180
Query: 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKG-VSSAMDCEGQISELESTLDSQVFTIEDKT 244
Y K+MKEFYH+S +KPK+FG+TAS V+RKG VSS + Q+SELE +DS++F E++
Sbjct: 181 YAKLMKEFYHESTSKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEERE 240
Query: 245 EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
+E F + KE Y+ S C +LK KLE S KFDASL +LQ + + +MD+K +
Sbjct: 241 GVEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFE 300
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
T +K+LS + +IL+CLD LGLICA+ A ++CLEK+ +EE E Y++ S+ CK FLE++
Sbjct: 301 TYQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDI 360
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
L IG LP DK +D ++ AV G++S KL EL L SF Q C+I VERI
Sbjct: 361 LSTIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERI 420
Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
I AKV+ERFVKK L +L V YLT + S + K+Q E+ + F+ GKVNLLF TDV+
Sbjct: 421 ITAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVV 480
Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE 544
EEG VP+CS ++ FDLPKT+ SY QS+ A+Q NS+ I+ LERGN KQR+ L D++R E
Sbjct: 481 EEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE 540
Query: 545 RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT 604
L +DPEA LK+C + V+ G+ V DS++ +
Sbjct: 541 ------VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV--------------- 579
Query: 605 PKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
+EEA A QT+ P SRN+ L C+KL L++
Sbjct: 580 ---------SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDN 609
Query: 665 HLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKF 723
+LL S E SK S AG+ KRKELHGTT ALSG WGE G AYKF
Sbjct: 610 NLLQS--NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKF 667
Query: 724 NFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKA 783
+F C+I E+YS F LL+ES L DVG E++LYLV K VKA+VS GQ+ L +++ KA
Sbjct: 668 DFCCNISGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKA 727
Query: 784 KCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSW 842
K FQ+ FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E N S
Sbjct: 728 KYFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSA 785
Query: 843 RINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSV 902
I+WS IN CAS+VEF+K+ S L + N N+S + ++IH AN S
Sbjct: 786 TIDWSAINSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASS 845
Query: 903 DAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962
D +L+++VV+AIHTGRIYSIVE V++SSA SPF+ + T+ YF++KYGIVL HP
Sbjct: 846 DKNSLEELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHP 905
Query: 963 GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISV 1021
QPL++LKQSH+ HNLLV+FN+ K+G + +KP +H H+PPELL R+DVP +V
Sbjct: 906 NQPLMKLKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAV 965
Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
+KS+YLLPSVM RLESLMLASQLREEI+C NF I S+ ILEA+TTL C ESFSMERLE
Sbjct: 966 LKSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLE 1025
Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
LLGDSVLKY SCHLFL YP K EGQLS +R + NS LH+L T RKLQGYIR+ AF+P
Sbjct: 1026 LLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEP 1085
Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
RRW APGQ SL PVPC+CG+DT EVPLD KFFT++ + +GK CDMGHRW+ SK+++DCA
Sbjct: 1086 RRWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCA 1145
Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
EALIGAYYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI
Sbjct: 1146 EALIGAYYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKI 1205
Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQ---------------------------------- 1287
+EF+ KFLL+EAITH+S++E Y Y+
Sbjct: 1206 QHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLR 1265
Query: 1288 ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
NL+ HLQ C+T+L +QI +Y+ SF KP ET S PS++ PKALG
Sbjct: 1266 SACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALG 1325
Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1391
D++ESI GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF +
Sbjct: 1326 DVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVK 1385
Query: 1392 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTG 1451
C+ G A ++LQL DVLL G+G E++ K A GKAAS LL +LE ++ IS+ S
Sbjct: 1386 CSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS--- 1440
Query: 1452 KLGDD---------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAP 1502
LGD+ C + +E L + + ++ P + P
Sbjct: 1441 -LGDNQSSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGP 1479
Query: 1503 INMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHI 1562
INMKKGGPR +L + CK LWPMPTF+T+E KSRT F +G EKRT FSSF S ITL I
Sbjct: 1480 INMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRI 1539
Query: 1563 PEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
P V G+ R DKKSSFDSA + +L+ELER+ +II
Sbjct: 1540 PNREAVMYAGEARPDKKSSFDSAVVELLYELERRKIVII 1578
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of repeat-associated small interfering RNAs (ra-siRNAs, derived from heterochromatin and DNA repeats such as transposons) by cleaving small dsRNAs into 24 nucleotide ra-siRNAs. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cabbage leaf curl virus (CaLCuV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL3 function in RNA silencing. Acts redundantly with DICER-LIKE 1 (DCL1) to promote flowering via repression of FLOWERING LOCUS C (FLC). Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1421 bits (3679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/1632 (47%), Positives = 1051/1632 (64%), Gaps = 102/1632 (6%)
Query: 35 PSSSTNSINFIPRIYQL-KVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN-GF 92
P S + + PR QL +VFE A R NTIAVL+TG+GKTM+AVML ++ A+ +++
Sbjct: 27 PRGSRPTADTTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAP 86
Query: 93 KKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTP 152
+++++FLAPTVHLVHQQ++VIR +TD +V GA V EW + W++E+ +N+++VMTP
Sbjct: 87 RRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTP 146
Query: 153 QILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVV 212
QILLDALR AFL++ V ++ DECH A G+HPY +IMKEFY S +P VFGMTASPV
Sbjct: 147 QILLDALRHAFLTMSAVSLLIFDECHRACGSHPYARIMKEFYFGSQWRPDVFGMTASPVA 206
Query: 213 RKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272
KG S+ +CE IS+LE TLD++++ +ED+ E+E F P ++YD +LK
Sbjct: 207 TKGASTLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKS 266
Query: 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEA 332
KL++ +FD+ L LQ S N +KD D+ +T RK LS YH KILY L++LG I E
Sbjct: 267 KLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEV 326
Query: 333 VKICLEKV--LKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
VKI +E V L E+C I+ ++SL YF +E L +I LP + +
Sbjct: 327 VKIHIESVKPLCDSEDC-IFSKASLCLHMSYF-KEALSLIEEILPQGYGELMKSESGSEE 384
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
GYIS+K++ L+ +F SFG S +VLC+IFV+RII AK VERF++ + + +++YL
Sbjct: 385 LTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYL 444
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
TG +TS DAL+P VQ+ L+ FR GKVNLLF TDV EEG+ VPNCS VIRFDLP+TV SY
Sbjct: 445 TGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSY 504
Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVK 568
+QSRGRAR++NS+FILM+ERGNL+Q+ +F +I++ V + AL R P A +
Sbjct: 505 VQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDL-SIQG 563
Query: 569 TKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628
+Y V+STGA++T D VNLI +YCE LP D+Y+ PKP F+ + ++C LTLP NA
Sbjct: 564 MYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNA 623
Query: 629 PFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPG 688
FQ+IVGP S + NLSKQLV LEAC+KLHQ+G LNDHL+P EEP + + + + + G
Sbjct: 624 AFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISG 683
Query: 689 AGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELDN 747
GTTKRKELHGTT + ALSG W + + L+ Y+ +F C E Y+GFVLL+E ELD+
Sbjct: 684 PGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDD 743
Query: 748 DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG 806
DV +++L+L+ +K V TV+ G+V L+ Q+ K K FQE FFNG+FG+LF S+ SG
Sbjct: 744 DVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSG 803
Query: 807 S-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFL 865
+ R+F K+ W+ MYLLLPL + D I+W I CA VE + S+
Sbjct: 804 AQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQD-DLSIHWEAIESCAGAVEQLW-SSYQ 861
Query: 866 GAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVE 925
G N P P K +++IHLAN S+ ++KD VVL++HTGRIY++++
Sbjct: 862 GDE-------NVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLD 914
Query: 926 IVNNSSAESPFDGNTDDDSK---TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL--- 979
++ +++AE FD + +FV+Y+ +KYGI++ HP QPLL LKQSHN HNLL
Sbjct: 915 LILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSK 974
Query: 980 VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLM 1039
+ + DG +GK + +K Q+H +PPELL+ +DV ++KS YLLPSV+ RL+SLM
Sbjct: 975 LKYLDGS-TGKP----LLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVIHRLQSLM 1029
Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLT 1099
LASQLR EI N HIP +LILEA+TTL CCE+FS+ERLELLGDSVLKY V C LFL
Sbjct: 1030 LASQLRREIG---YNQHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLR 1086
Query: 1100 YPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCEC 1159
YP KHEGQLS RS AVCN+TLHK G R LQGY+RD+AFDPRRWVAPGQ+SLRP PC C
Sbjct: 1087 YPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNC 1146
Query: 1160 GVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219
G++T VP ++ D VGKPCD GHRWM SKTI+DC EAL+GAYYVGGG+ AAL+
Sbjct: 1147 GIETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALW 1206
Query: 1220 MMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279
+M+W GID ++ L+ + AS + +IN+I+++E+K+ Y F+VK LL EAITH S
Sbjct: 1207 VMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPS 1266
Query: 1280 VQEF---YCYQ------------------------------------------------- 1287
+QE YCYQ
Sbjct: 1267 LQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVR 1326
Query: 1288 -NLYKHLQHCSTLLLSQITEYVKS-FPKPGETTD--SGPSMKAPKALGDLLESIVGAVLI 1343
N++ HLQH S +LL QITEYV+S G+ ++ + K PK LGD++ESI GAV I
Sbjct: 1327 NNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFI 1386
Query: 1344 DTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAEL 1403
DT N+D VW IF+P+LSP++TPDKL LPP REL+ELC +G F+ CT KGE V E+
Sbjct: 1387 DTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEM 1446
Query: 1404 RLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKE 1463
LQL+D LLV +G +R++K AK KAAS++L L+ I + S +L D +
Sbjct: 1447 SLQLRDELLVAQGHDRNKKRAKAKAASRILADLKQQGLSIKQCLSKAKQL-DIVTSDLQF 1505
Query: 1464 DLPEPPSCKRQKGTEAAIP-AGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTML 1522
DL GT+ + D +V VV P+ M+KGGPR++LF+LCK +
Sbjct: 1506 DLT-------SSGTQLSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQ 1558
Query: 1523 WPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSF 1582
WPMP FE E + RT +V +G T F+SFVS ITLHIP+ + G+ R DKKS+
Sbjct: 1559 WPMPEFEFVEQRFRTPIVM-DG-ATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQ 1616
Query: 1583 DSAALIMLHELE 1594
DSA+L+MLH+L+
Sbjct: 1617 DSASLMMLHKLQ 1628
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/1743 (29%), Positives = 782/1743 (44%), Gaps = 332/1743 (19%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL+V E AK RNTIA LETGAGKT+IAV+LIK + + K L +FL P V LV
Sbjct: 268 RQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV 327
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
+Q VLVMT QILL+ LR + + +
Sbjct: 328 YQ--------------------------------------VLVMTAQILLNILRHSIIKM 349
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
D + +++DECHHA HPY+ +M EFYH + + +P VFGMTASPV KGV+S DC
Sbjct: 350 DAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTSQEDCAI 409
Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS--DLKGKLEVSWSKFD 282
+I LES LDS V TI+D+ E+E VP E YD++ S + ++E + +
Sbjct: 410 KIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTVEEAA 469
Query: 283 ASLSKLQGSQLNCYKDMDDK------HKTLRKQLSDYHAKIL-------YCLDELGLICA 329
S SK Q +D + + + SD A ++ Y L ELG CA
Sbjct: 470 LSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 529
Query: 330 YEAVK---ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVI------GSALP------- 373
Y+ + L+ +A + ++ Q S +L++V+ ++ G+A+
Sbjct: 530 YKVAQSFLTALQNDERANYQVDVKFQES-----YLKKVVDLLHCQLTEGAAMKSETSDVE 584
Query: 374 ----------------LADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLC 417
L D AV G ++ ++ L+++ L + +
Sbjct: 585 MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFRA 644
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
IIFVER++ A V+ + + ++P L+ + A L G + + ++Q + + FR G+V L
Sbjct: 645 IIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQ-DTISKFRDGRVTL 703
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
L AT V EEG+ + C+ VIRFDL KTV +YIQSRGRAR+ S +ILMLERGN+ L
Sbjct: 704 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNISHETFL 763
Query: 538 FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
+ SE ++ A+ R L Y VESTGA V+ +S+V LIH
Sbjct: 764 RNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHF 823
Query: 593 YCEMLPSDKYYTPKPIFKYKSAEEA-----YECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
YC LPSD+Y P F + E+ Y C+L LP NAPF+ + GP + L++Q
Sbjct: 824 YCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQA 883
Query: 648 VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELH--GTTPI-- 703
VCL AC+KLH++GA D LLP E + +E P GT + +E + G I
Sbjct: 884 VCLAACKKLHEMGAFTDTLLPD-RGSGEGEKTEQNDEGEPLPGTARHREFYPEGVADILR 942
Query: 704 --RALSGRWGEKCGVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
LSGR G + + Y ++ C VT++ S F ++ +ELD +V +
Sbjct: 943 GEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQL-SNFAIIFGNELDAEVLSTT 1001
Query: 754 LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
++L++ + KA++ G++ + Q+ K F + + L V S
Sbjct: 1002 MDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIV---LDVDVDPS------- 1051
Query: 813 KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASV------VEFIKEKSFLG 866
+ W P+ YL +P+ D I+W+ +N + ++ + +LG
Sbjct: 1052 ----TTPWDPAKAYLFVPVG-AEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLG 1106
Query: 867 AAQCNNNGGNSS--------------------------------------PCRTSPCKTG 888
+ G P R +
Sbjct: 1107 TNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFSD 1166
Query: 889 CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD----DS 944
+ + +A+ +AK+L MVV A H+G+ + + I N +AE+ F +
Sbjct: 1167 YQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEY 1226
Query: 945 KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
++ +Y+ +KYG+ LI+ QPL+R + NLL + + +G S K +
Sbjct: 1227 SSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKT--YY 1284
Query: 1005 VHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILE 1064
V++PPEL + +P S+V+ LPS+M+R+ES++LA QL++ I ++ +P++ ILE
Sbjct: 1285 VYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDII-----DYPVPATKILE 1339
Query: 1065 ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
ALT C E+ ER ELLGD+ LK+ VS LFL YP+KHEGQL+ R V N L++
Sbjct: 1340 ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQY 1399
Query: 1125 GTDRKLQGYIRDSAFDPRRWVAPGQLSL---------------RPVPCECGVDTLEVPLD 1169
++ LQ YI+ F P RW APG L + CE ++ + D
Sbjct: 1400 ALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYAD 1459
Query: 1170 GKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229
+D ++ C +R + SKT+AD EALIG YYV GG IAA ++MKW+GI A+
Sbjct: 1460 N--MQEDGEIEGDSSC---YRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAE 1514
Query: 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ 1287
L+ + S + IN ++ +G EF K LL EAITHAS CYQ
Sbjct: 1515 LDPEEIPPPKPYDIPESIMRSIN-FDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQ 1573
Query: 1288 N--------------------------------------------------LYKHLQHCS 1297
L+ HL+H S
Sbjct: 1574 RLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1633
Query: 1298 TLLLSQITEYVKSFP----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
+ L +QI E+VK KPG + KAPK LGD++ESI GA+ +D+ + VW
Sbjct: 1634 SALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVW 1693
Query: 1354 RIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLV 1413
++F+P+L P+VTP+ L + P+REL E C ++ + G + E+ D + +
Sbjct: 1694 KVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEV---FVDGVQI 1750
Query: 1414 GEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKR 1473
G Q +K A+ AA L L+ E K G+ + + T++
Sbjct: 1751 GVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQ---------- 1800
Query: 1474 QKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTES 1533
+L +C WPMP +
Sbjct: 1801 ---------------------------------------TLNDICLRRQWPMPQYR---- 1817
Query: 1534 KSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFG-NVECNGDPRADKKSSFDSAALIMLHE 1592
C FV + ++ + G EC G+P K + DSAA+++L
Sbjct: 1818 --------CVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLEL 1869
Query: 1593 LER 1595
L R
Sbjct: 1870 LNR 1872
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce microRNAs (miRNAs) of 21-24 nucleotides which target the selective destruction of complementary RNAs. Regulates by this way the development of the plant. May not be involved in small interfering RNAs (siRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust.
Identities = 492/1682 (29%), Positives = 775/1682 (46%), Gaps = 270/1682 (16%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
I R YQ+++ + A N I L TG GKT IAVMLI ++ + S K + IFLAPTV
Sbjct: 123 IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ VI +F+V + G K + + S+ W++EI N+VLVMTPQILL L+ F+
Sbjct: 182 LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANEVLVMTPQILLHNLQHCFI 240
Query: 165 SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMD 221
++ + ++ DECHHA NHPY +IMK FY +S +P++FGMTASPVV KG + +
Sbjct: 241 KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSEN 300
Query: 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281
I+ LE+ L+++V+++E +++ FV S +Y + S S ++
Sbjct: 301 LSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQ-------STIRY 353
Query: 282 DASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKIC 336
+ L ++ L K + D H+T +++ L H ++Y L LGL A +A KI
Sbjct: 354 ENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQ 413
Query: 337 LEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALP----LADKIFLDFGFDYSKAVDL 392
L Q+E S C +L + S + +D + L A+
Sbjct: 414 LNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL-------AALKE 466
Query: 393 GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
S KL +L+++ F + CIIFV RI+ A+ + + + L +L G +
Sbjct: 467 PLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLS 526
Query: 453 TSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
+ + +++ + + +L+ F+ ++NLL AT V EEG+ + C VIR+DLP+TV+S+IQSR
Sbjct: 527 SGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSR 586
Query: 513 GRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY 572
GRAR S++ +++ GN K+ + + + +E + R E + C + + Y
Sbjct: 587 GRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSE----ETCPRLDEELY 642
Query: 573 IVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPF 630
V TGA ++ SS++L+++YC LP D+++ PKP F++K +E C +TLP+NAP
Sbjct: 643 KVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPI 702
Query: 631 QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK--NESLPG 688
I + +K+ CL+A +LH +G LND LLP ++ E+ L + +++ G
Sbjct: 703 SEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKG 762
Query: 689 AGTTKRKELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDN 747
G ++ P+ +W + LH+Y F IY F ++S L
Sbjct: 763 EGCSRGDLYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPV 821
Query: 748 DVGNFELELYLV-SKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLF--GKL---FVK 801
+ +++L+L ++V + SG D D++ A+ FQE+ LF G+L FV
Sbjct: 822 EAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVP 881
Query: 802 SKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKE 861
L+ + +S S S YLLLPL + + G+ ++W I C
Sbjct: 882 ----------LELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCL-------- 921
Query: 862 KSFLGAAQCNNNGGNSSPCRTSPC--------KTGCHGKDVIHLANGSVDAKNLKDMVVL 913
SSP +P +G H K LANG + ++K+ +V
Sbjct: 922 ---------------SSPIFKTPSVLVEDIFPPSGSHLK----LANGCWNIDDVKNSLVF 962
Query: 914 AIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSH 973
++ + Y + +I + + SP + +K+ V + YG+ L HP QPLLR+K
Sbjct: 963 TTYSKQFYFVADICHGRNGFSPV---KESSTKSHVESIYKLYGVELKHPAQPLLRVKPLC 1019
Query: 974 NPHNLLVNFNDGGGSGKGSKSGMNTK-KPQ----MHVHMPPEL--LVRVDVPISVVKSLY 1026
+ NLL N M T +PQ + +PPEL L + + SL
Sbjct: 1020 HVRNLLHN-------------RMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLS 1066
Query: 1027 LLPSVMQRLESLMLASQLREEINCHSRNF-HIPSSLILEALTTLGCCESFSMERLELLGD 1085
LLPS+M R+E+L++A +L+ ++ + +LEALTT C E S+ERLE+LGD
Sbjct: 1067 LLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGD 1126
Query: 1086 SVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV 1145
+ LK+AVS HLFL + EG+L+ RRS V NS L +L + LQ YIRD A DP ++
Sbjct: 1127 AFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFF 1186
Query: 1146 APGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP----CDMGHRWMGSKTIADCA 1201
A G PC D + + +D ++ C GH W+ KTIAD
Sbjct: 1187 AFGH------PCRVTCDEV-ASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVV 1239
Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLE-VSLVDDCITRASLRSYVPRI--NEIKDIE 1258
EAL+GA+ V G A+ +KW+G++ D E + + D CI R Y+P N ++ +E
Sbjct: 1240 EALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIAS---RRYLPLTTRNNLETLE 1296
Query: 1259 SKIGYEFTVKFLLQEAITHASVQEF--YCYQNL--------------------------- 1289
+++ Y+F K LL +A H S CYQ L
Sbjct: 1297 NQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQ 1356
Query: 1290 ----------------------YKHLQHCSTLLLSQITEYVKSF--PKPGETTDS-GPSM 1324
K C ++ L ++ E +F P + S GP
Sbjct: 1357 LTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP-- 1414
Query: 1325 KAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSL 1384
+ PK LGDL+ES +GA+ +D NL+ VW + L P+ L++ P++ELIELC S
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIELCQSY 1474
Query: 1385 GYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV------ 1438
+ + + T K EL++ L R+++ KAA ++ L+
Sbjct: 1475 KWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMITNLKAHENITT 1534
Query: 1439 ---CEKRISKGASNTGKL----------------------------GDDCRQTT---KED 1464
E + G N KL G+ R ++ +
Sbjct: 1535 SHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGNSERSSSYVIRRG 1594
Query: 1465 LPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGP-----RTSLFQLCK 1519
LP+ PS + + AI +K GGP ++ L + C
Sbjct: 1595 LPQAPSKTEDRLPQKAI-----------------------IKAGGPSSKTAKSLLHETCV 1631
Query: 1520 TMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGN--VECNGDPRAD 1577
W P FE E E SFV K+ L + + N +EC G+ RA
Sbjct: 1632 ANCWKPPHFECCEE------------EGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1679
Query: 1578 KK 1579
KK
Sbjct: 1680 KK 1681
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the biogenesis of trans-acting small interfering RNAs (ta-siRNAs, derived from the TAS1, TAS2 or TAS3 endogenous transcripts) by cleaving small dsRNAs into 21-24 nucleotide ta-siRNAs. Functions with the dsRNA-binding protein DRB4 in ta-siRNAs processing. Acts in the RDR6/SGS3/DCL4/AGO7 ta-siRNA pathway involved in leaf developmental timing. Plays a role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL2 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. Required for the production of the 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays an important role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the cucumber mosaic virus (CMV), turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL4 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust.
Identities = 477/1509 (31%), Positives = 707/1509 (46%), Gaps = 178/1509 (11%)
Query: 34 GPSSSTN---SINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN 90
GPSS+ I R YQL + + A N I L TG GKT IAV+LI ++ I+
Sbjct: 15 GPSSTRGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKP 74
Query: 91 GFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVM 150
+++ IFLAPT+ LV QQ VI TDF+V+ YYG G + D Q W+ ++ + +VLVM
Sbjct: 75 S-REVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYG-NGKNSRDHQEWENDMREFEVLVM 132
Query: 151 TPQILLDALRKAFLSLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKS--DNKPKVFGM 206
TPQILL +LR F+ ++ + +++DECHHA HPY +IMKEFY+ + + P+VFGM
Sbjct: 133 TPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVFGM 192
Query: 207 TASPVVRKGV--------------------------SSAMDCEGQISELESTLDSQVFTI 240
TASP++ KGV S+ ++ I+ LE L ++V ++
Sbjct: 193 TASPIIGKGVMPSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVCSV 252
Query: 241 EDKTEMEVFVPSAKESCRFY------DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLN 294
D E+E V S FY + + C +L S ASL
Sbjct: 253 -DNEELESVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLC-------- 303
Query: 295 CYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354
D D K L K L H I++CL ELG A +A + L + E+ S
Sbjct: 304 ---DFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQAARTFLSFDGDKLDRREVDLNGS 359
Query: 355 LQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAVDLGYISTKLHELLQLFLSFGKST 413
F L+ S L G FD K ++ + S K L+ + +G
Sbjct: 360 TSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-LEEPFFSNKFSVLINVLSRYGLQE 416
Query: 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473
+ CI+FV+RI A+ + ++ + L +L G + ++ +++ F G
Sbjct: 417 NMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFSSG 476
Query: 474 KVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQ 533
+VNLL AT V EEG+ + C V+RFDLP+TV+S+IQSRGRAR S+++++LER N
Sbjct: 477 EVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVLLERENQSH 536
Query: 534 RNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRY 593
L I E + + SR F ++ Y V++TGAS++T SV+L+H Y
Sbjct: 537 EKLLNGYIAGESIMNEEIDSRTSNDMF----DCLEENIYQVDNTGASISTACSVSLLHCY 592
Query: 594 CEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEAC 653
C+ LP D ++TP P+F Y E C L LP NA F+ G +K+ +K+ CL+AC
Sbjct: 593 CDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKAC 652
Query: 654 EKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA--GTTKRKELHGTTPIRALSGRWG 711
KLH++GAL D LLP S N +S N S + R+ELH I A+ G
Sbjct: 653 VKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKVEDDSLREELHEML-IPAVLKPSG 709
Query: 712 EKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLV-SKTVKATVS 768
K + LH Y F Y F L + + L + +++L+L + VKA +
Sbjct: 710 LKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEAETLQVDLHLARGRIVKAGIK 769
Query: 769 SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLL 828
G++ + ++M A FQE+ K+ + S L + +L S YLL
Sbjct: 770 HLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEFTSPHVKLGNDV-TLEINSTFYLL 823
Query: 829 LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
LP++ +GD + I+W + C SSP P
Sbjct: 824 LPIK-QKCYGD-RFMIDWPAVERCL-----------------------SSPIFKDPIDVS 858
Query: 889 CHG----KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDS 944
H + + L +G ++ VV + H + + I++ +A S G
Sbjct: 859 VHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWSEHSG------ 912
Query: 945 KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMH 1004
T+ +F E++ I L HP QPLL+ KQ N NLL N +G + +
Sbjct: 913 ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGREL------LEHF 966
Query: 1005 VHMPPEL--LVRVDVPISVVKSLYLLPSVMQRLESLMLASQLRE-EINCHSRNFHIPSSL 1061
V +PPEL L + + SL LLPS+M RLE+L++A +L++ ++ I +S
Sbjct: 967 VELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASG 1026
Query: 1062 ILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121
ILEALTT C E S+ER E+LGD+ LKY V H F+TY EGQL+ RRS V NS L
Sbjct: 1027 ILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHL 1086
Query: 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVV 1181
++L +KLQ YIRD F+P ++ APG RP C D +EV L D +
Sbjct: 1087 YELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVCNTD-VEVRLHQMDIHPDNRENC 1141
Query: 1182 GKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITR 1241
C H W+ K IAD E+LIGA+ V GG AA + W+GID D + +
Sbjct: 1142 NLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDS 1201
Query: 1242 ASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFY--CYQNL---------- 1289
+S+ + +I +E IGY+F K LL +A H S + CYQ L
Sbjct: 1202 SSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEY 1261
Query: 1290 ----------------------------------------YKHLQHCSTLLLSQITEYVK 1309
+KHL S L S I+++
Sbjct: 1262 VITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEM 1321
Query: 1310 SFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1369
D PKALGD++ES +GAVL+D+ NL+ VW++ +L P++T +
Sbjct: 1322 YVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANM 1381
Query: 1370 ELPPLRELIELCDSLGYFVKENCTLKGE-MVHAELRLQLKDVLLVGEGQERSRKAAKGKA 1428
P+REL ELC G+ + +K + H ++ + +K +++ R+ KAA+ A
Sbjct: 1382 HTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFA 1441
Query: 1429 ASQLLKKLE 1437
A + L KL+
Sbjct: 1442 AQETLSKLK 1450
|
Involved in the RNA silencing pathway. Cleaves double-stranded RNA to produce small interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs. Required for the production of 21 nucleotide siRNAs. Regulates shoot apical meristem (SAM) initiation and maintenance, leaf polarization and lemma polarity through the trans-acting siRNAS (ta-siRNAs) pathway, which probably modulate the expression of the ARF2, ARF3, ARF4, ARF14 and ARF15 genes. Can process endogenous 21 nucleotide siRNAs derived from an imperfect inverted repeat. May not be involved in microRNAs (miRNAs) production. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 445/1429 (31%), Positives = 688/1429 (48%), Gaps = 216/1429 (15%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK----LIIFLAPT 102
R YQ++ E A ++NTI LETG+GKT+IA+ML++ A F+K +FL P
Sbjct: 25 RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYL-----FRKPSPCFCVFLVPQ 79
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
V LV QQ + +++HTD +V Y+G GVD WDS W++E++K +VLVMTP ILLDALR +
Sbjct: 80 VVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRHS 139
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKGVS 217
FLSL ++ +++DECHHA G HPY IM+EFYHK + N P++FGMTAS V KG
Sbjct: 140 FLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG-- 197
Query: 218 SAMDCE-GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---SDLKGK 273
+D +I ELE+ ++S+V+T E+++ + FVP + S ++Y K + L K
Sbjct: 198 ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVEK 257
Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKH-KTLRKQLSDYHAKILYCLDELGLICAYEA 332
LE K SL L D++ ++ K+L + + YCLD+LG++ A +A
Sbjct: 258 LERLTIKHRLSLGTL---------DLNSSTVDSVEKRLLRISSTLTYCLDDLGILLAQKA 308
Query: 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL-----PLADKIFLD---FGF 384
+ S+ Q FL L++ AL A + FL G
Sbjct: 309 AQ----------------SLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGL 352
Query: 385 DYSKA-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-P 438
++S A + G ++ K L++ L + + CIIFV+R+I A V+E + ++ P
Sbjct: 353 NWSVANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILP 412
Query: 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498
+ Y+ G+ + + T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIR
Sbjct: 413 NCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIR 472
Query: 499 FDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA 558
FD + S+IQSRGRAR NS +++M+E G+L +++L + + + + +L
Sbjct: 473 FDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS--- 529
Query: 559 CFLKACTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA 614
L C + S + VESTGA+VT SSV+LI+ YC LPSD+Y+ P P F
Sbjct: 530 --LVPCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKD 587
Query: 615 EEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPS 674
+ + C L LP + P + + N + KQ VCL+AC +LH+VGAL+DHL+P +
Sbjct: 588 QGS--CTLYLPKSCPVKEV--KAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAE 643
Query: 675 ENNLISKKNESLPGAGTTKRKELHGTTPIR---ALSGRWGEKCGVILHAYKFNFACSIVT 731
+S+K E + + + P L ++ + H Y +
Sbjct: 644 T---VSQKLEKI---------QYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPR 691
Query: 732 EIYSGFVLL-IESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELF 790
+ VLL L++D+GN L T+ T+S G HL +++ + FQ
Sbjct: 692 NFHLNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITL 751
Query: 791 FNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGIN 850
F L V++ L+ + YLL+P +T + I+W I
Sbjct: 752 FRVLLDH-SVENLMEALNGLHLRDGV------ALDYLLVP----STHSHETSLIDWEVIR 800
Query: 851 PCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDM 910
+ EK C+ NG + ++H +G +++
Sbjct: 801 SVNLTSHEVLEKH----ENCSTNGASR----------------ILHTKDGLFCTCVVQNA 840
Query: 911 VVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970
+V H G +Y ++NN + S D +T++ Y+ E++GI L +PLL +
Sbjct: 841 LVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGD-QTYIEYYEERHGIQLNFVDEPLLNGR 899
Query: 971 QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLL 1028
H+ L +K + + V +PPEL + PISV + S +
Sbjct: 900 HIFTLHSYL----------HMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFI 949
Query: 1029 PSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
PSVMQR+ESL++A L++ I +IP+ +LEA+TT C + F +E LE LGDS L
Sbjct: 950 PSVMQRIESLLIAYNLKKSI----PKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFL 1005
Query: 1089 KYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPG 1148
KYAV LF HEG LS ++ + N L + G +KLQG+IRD F+P+ W+ PG
Sbjct: 1006 KYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPG 1065
Query: 1149 QLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAY 1208
Q + L + + V R + K++AD E+LIGAY
Sbjct: 1066 Q------------SSAAYSLVNDTLPESRNIYVA-----SRRNLKRKSVADVVESLIGAY 1108
Query: 1209 YVGGGLIAALYMMKWLGIDADLEVSLVD-DCITRASLRSYVPRINEIKDIESKIGYEFTV 1267
GG +AAL M W+GI D + + D +A ++ + +ES + Y F
Sbjct: 1109 LSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAE------KLVNVGYMESLLNYSFED 1162
Query: 1268 KFLLQEAITHASVQ-----------EFY-------------------------------- 1284
K LL EA+TH S EF
Sbjct: 1163 KSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSAS 1222
Query: 1285 ----CY------QNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSG--PSMKAPKALGD 1332
CY NL+KH+ + S L I+ V F + + G + PK LGD
Sbjct: 1223 VNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGD 1282
Query: 1333 LLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELC 1381
++ES+ GA+ +D+ N + V+ KP+L ++TP+ ++L P+REL ELC
Sbjct: 1283 VIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELC 1331
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Involved in the processing of natural small interfering RNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving small dsRNAs into 24 nucleotide nat-siRNAs. Plays an essential role in transitive silencing of transgenes by processing secondary siRNAs. This pathway, which requires DCL4 and RDR6, amplifies silencing by using the target RNA as substrate to generate secondary siRNAs, providing an efficient mechanism for long-distance silencing. May participate with DCL3 in the production of 24 nucleotide repeat-associated siRNAs (ra-siRNAs) which derive from heterochromatin and DNA repeats such as transposons. Plays a role in antiviral RNA silencing. Involved in the production of viral siRNAs derived from the turnip crinkle virus (TCV) and tobacco rattle virus (TRV). Targeted by the viral silencing suppressor (VSR) protein 2b of the cucumber mosaic virus (CMV) that inactivates DCL2 function in RNA silencing. Does not seem to be involved in microRNAs (miRNAs) processing. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 575 bits (1483), Expect = e-163, Method: Compositional matrix adjust.
Identities = 434/1429 (30%), Positives = 685/1429 (47%), Gaps = 208/1429 (14%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
+ R YQL+ E A R NT+A LETG+GKT+IAVML++ A ++ ++ +FL PTV
Sbjct: 33 MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ V+ HTD V+++ G GVD WD+ W+ ++ +VLVMTPQILLD LR +F
Sbjct: 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
L + ++ DECHHA GN PY I KEFYH SD P++FGM+AS + K ++
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN- 211
Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
+ QISE+E+ ++S+V+T++ ++ + ++P A +D S S+L +
Sbjct: 212 PHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVDFDDSNI-SSELHANILSCL 270
Query: 275 -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
++ +A KL GS L + ++++S H +YCL LG+ A +A
Sbjct: 271 NRLNKKHIEALDRKLHGSSL----------ENAKQRISKLHHTFVYCLYNLGVWLAAKAA 320
Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
E + Y ++SL F E L +V G ++++ FL
Sbjct: 321 ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365
Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
G + G ++ K+H L++ L + + CI+FVER+I + V+E + + ++
Sbjct: 366 GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSG 425
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
V ++ GS + + + K E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD
Sbjct: 426 WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
TV S+IQSRGRAR NS ++L++ RG+++ + + S + + + +L +C
Sbjct: 486 ATVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPL 545
Query: 563 ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 622
T + Y VEST A VT +SSV LIH +C LPSD+Y+ P P F A C L
Sbjct: 546 ENTLCEDTYYRVESTRAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRFDIDKASGT--CTL 603
Query: 623 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
LP ++P QT+ ++ K+ VCL+AC++LH +GAL D LLP ++ P +
Sbjct: 604 HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 656
Query: 683 NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
P + E P + R + G I + YK + T + +L +
Sbjct: 657 ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 711
Query: 742 ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
+ +L +D + +L T+ G +HL+ +Q+ A+ FQ + L G ++
Sbjct: 712 KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 771
Query: 802 SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 860
S+G + F + + P +YLLLPL S RI+W +
Sbjct: 772 V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 806
Query: 861 EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 920
F + N + + C + C D++ +G LK+ +V H
Sbjct: 807 ---FSSSPIYEANNKHMTHCHS------CKDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 857
Query: 921 YSIVEIVNNSSAESPFDGNT-----DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNP 975
Y I ++ D N+ D T+ +YF ++G+ L QPLL + +
Sbjct: 858 YVISGFLD-------LDANSCLPQHDGTVVTYKDYFKTRHGLTLTFENQPLL----AGSK 906
Query: 976 HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQ 1033
H + NF S K + G + V +PPEL + P+S + +PS+M
Sbjct: 907 HVKVRNFLHNCYSKKEKEPG-----DRYSVELPPELCRIIMSPVSANNLHIFSYVPSIMF 961
Query: 1034 RLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVS 1093
R++ ++L+ +L+ ++ + F +P ILEALTT C E FS E LE LGDS LKY +
Sbjct: 962 RIQCMLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTT 1021
Query: 1094 CHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLR 1153
HLF Y +HEG L+ + + N+ L +L L GYI F+PR W+
Sbjct: 1022 RHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI-------- 1073
Query: 1154 PVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYV 1210
+PC +D E + K+ P M R M SK IAD EALIGAY
Sbjct: 1074 -IPC---LDYDE--------RDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLS 1121
Query: 1211 GGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFL 1270
G AA +MK LG++ + + + ++ ++ +E +GY+F L
Sbjct: 1122 TAGEKAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----NVRSLEGMLGYKFNDSLL 1177
Query: 1271 LQEAITHASVQ------------------------EFY---------------------- 1284
L EA+TH S Q E+Y
Sbjct: 1178 LLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNN 1237
Query: 1285 -CYQN------LYKHLQHCSTLLLSQITEYV----KSFPKPGETTDSGPSMKAPKALGDL 1333
CY + L KH+ H S+ L +++ Y+ +SF P ++G + PK LGD+
Sbjct: 1238 NCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGL--PKVLGDV 1295
Query: 1334 LESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
+ESI GA+ +D+K + + VWR K +L P+ TP+ +E P++ L E CD
Sbjct: 1296 IESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1344
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2 | Back alignment and function description |
|---|
Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust.
Identities = 414/1422 (29%), Positives = 663/1422 (46%), Gaps = 226/1422 (15%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
+ R YQL+ E A R NT+A LETG+GKT+IAVML++ A ++ ++ +FL PTV
Sbjct: 33 MARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ V+ HTD V+++ G GVD WD+ W+ ++ +VLVMTPQILLD LR +F
Sbjct: 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query: 165 SLDIVCFIVIDECHHATGNHPYTKIMKEFYH------KSDNKPKVFGMTASPVVRKGVSS 218
L + ++ DECHHA GN PY I KEFYH SD P++FGM+AS + K ++
Sbjct: 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLNQ 212
Query: 219 AMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL---- 274
+ QISE+E+ ++S+V+T++ ++ + ++P A +D S S+L +
Sbjct: 213 H-NYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIVHFDDSNI-SSELHANILSCL 270
Query: 275 -EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
++ +A KL GS L + ++++S H +YCL LG+ A +A
Sbjct: 271 NRLTKKHIEALDRKLHGSSL----------ENAKQRISKLHRTFVYCLYNLGVWLAAKAA 320
Query: 334 KICLEKVLKAQEECEIYRQSSLQCKYFLEEVL--HVIGSALPLADKI------FLD---F 382
E + Y ++SL F E L +V G ++++ FL
Sbjct: 321 ------------EVQSYEENSLS---FWGETLDKNVEGFIRNYSEEVHRELSCFLKNGHI 365
Query: 383 GFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH 442
G + G ++ K+H L++ L + + CI+FV+R+I + V+E + + ++
Sbjct: 366 GEKFPADSQDGILTPKVHCLIRTLLQYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSG 425
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
V ++ GS + + + K E++ESFR GKV+++ AT ++EEG+ VP+C+ VIRFD
Sbjct: 426 WNVKHMAGSRPGLLSQSRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPS 485
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
TV S+IQSRGRAR NS ++L++ RG+++ + S + + + +L +C
Sbjct: 486 ATVCSFIQSRGRARMENSDYLLLVGRGDVEAHTNAKKFLASGQIMREESLRLGSISCQPL 545
Query: 563 ACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECEL 622
T + Y VEST P F A C L
Sbjct: 546 ENTLCEDTYYRVEST-----------------------------PAFDIDKASGT--CTL 574
Query: 623 TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKK 682
LP ++P QT+ ++ K+ VCL+AC++LH +GAL D LLP ++ P +
Sbjct: 575 HLPKSSPVQTV--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEE----- 627
Query: 683 NESLPGAGTTKRKELHGTTPIRALSG-RWGEKCGVILHAYKFNFACSIVTEIYSGFVLLI 741
P + E P + R + G I + YK + T + +L +
Sbjct: 628 ----PDIVVENKIEQPSYFPEEFVDNWRSFSRLG-IYYCYKISLEGCPKTASPTDILLAL 682
Query: 742 ESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVK 801
+ +L +D + +L T+ G +HL+ +Q+ A+ FQ + L G ++
Sbjct: 683 KCDLGSDFTSSSFKLPGGQDNASVTMKYVGIIHLNQEQVIIARRFQTTILSFLIGDDHLE 742
Query: 802 SKSSGSREFFLKRETNSLWSP-SYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK 860
S+G + F + + P +YLLLPL S RI+W +
Sbjct: 743 V-SNGIKYF------HEMQVPIGVVYLLLPLV--------SGRIDWCSMK---------- 777
Query: 861 EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRI 920
F + N + + C + C D++ +G LK+ +V H
Sbjct: 778 ---FSSSPIYEANNKHMTHCHS------CRDIDLLQTKDGPFCRCILKNSIVCTPHNNIF 828
Query: 921 YSIVEIVN-NSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
Y I ++ ++++ P D T+ +YF ++G+ L QPLL + N L
Sbjct: 829 YVISGFLDLDANSRLP---QHDGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVRNFL 885
Query: 980 VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV--VKSLYLLPSVMQRLES 1037
N+ G + V +PPEL + P+S + +PS+M R++
Sbjct: 886 HNYYYKKEKEPGDRYS---------VELPPELCRIIMSPVSANNLHIFSYVPSIMFRIQC 936
Query: 1038 LMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLF 1097
++L+ +L+ ++ + F +P ILEALTT C E FS E LE LGDS LKY + HLF
Sbjct: 937 MLLSVKLKVQLGPTVQQFDVPVLKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLF 996
Query: 1098 LTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157
Y +HEG L+ + + N+ L +L L GYI F+PR W+ +PC
Sbjct: 997 SEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIHAEEFNPRDWI---------IPC 1047
Query: 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMG--SKTIADCAEALIGAYYVGGGL 1214
L+ G + K+ P M R M SK IAD EALIGAY G
Sbjct: 1048 ------LDYDERG-----NKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGE 1096
Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
AA +MK LG++ + + + ++ +++ +E +GY+F LL EA
Sbjct: 1097 KAAFLLMKSLGMNIEFHTEIPVERKISMKAEEFI----DVRSLEGMLGYKFNDSLLLLEA 1152
Query: 1275 ITHASVQ------------------------EFY-----------------------CYQ 1287
+TH S Q E+Y CY
Sbjct: 1153 LTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYA 1212
Query: 1288 N------LYKHLQHCSTLLLSQITEYV-KSFPKPGETTDSGPSMKAPKALGDLLESIVGA 1340
+ L KH+ H S+ L +++ Y+ +SF P ++G + PK LGD++ESI GA
Sbjct: 1213 HAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIGL--PKVLGDVIESIAGA 1270
Query: 1341 VLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
+ +D+K + + VWR K +L P+ TP+ +E P++ L E CD
Sbjct: 1271 IYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1312
|
Probably involved in the RNA silencing pathway. May cleave double-stranded RNA to produce short 21-24 nucleotides (nt) RNAs which target the selective destruction of complementary RNAs. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
| >sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 297/874 (33%), Positives = 443/874 (50%), Gaps = 93/874 (10%)
Query: 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106
R YQL V E AK +NTIA LETGAGKT+IA++LIK + + + S K L +FL P V LV
Sbjct: 250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLV 309
Query: 107 HQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
+QQ +VIR T F+V Y G G D WDS+ WQ+E VLVMT QILL+ LR + + +
Sbjct: 310 YQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRM 369
Query: 167 DIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNKPKVFGMTASPVVRKGVSSAMDCEG 224
+ + +++DECHHA HPY+ +M EFYH + D +P +FGMTASPV KGVSS +DC
Sbjct: 370 ETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAI 429
Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
+I LE+ LDS V TI+D+ E+E VP E YD++ S + ++ + +A+
Sbjct: 430 KIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIAAVEEAA 489
Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQL--------SDYHAKIL-------YCLDELGLICA 329
+ + S+ D K +Q+ SD A ++ Y L ELG CA
Sbjct: 490 QASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCA 549
Query: 330 YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL----------------- 372
Y+ + L L++ E Q Y L EV+ ++ L
Sbjct: 550 YKVGQSFL-SALQSDERVNFQVDVKFQESY-LSEVVSLLQCELLEGAAAEKVAAEVGKPE 607
Query: 373 -----------PLADKIFLDFGFDYSK----AVDLGYISTKLHELLQLFLSFGKSTQVLC 417
L D + G + AV G ++ K+ L++L L + +
Sbjct: 608 NGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTADFRA 667
Query: 418 IIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477
I+FVER++AA V+ + ++P L+ + A + G S + + ++Q + + FR G V L
Sbjct: 668 IVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQEMKSSQMQ-DTISKFRDGHVTL 726
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKL 537
L AT V EEG+ + C+ V+RFDL KTV +YIQSRGRAR+ S +ILM+ERGN+ L
Sbjct: 727 LVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFL 786
Query: 538 FDIIRSERSVTDTALSRD-----PEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHR 592
+ SE ++ A+ R + L + V Y VE+TGA V+ +S+V L+H
Sbjct: 787 RNARNSEETLRKEAIERTDLSHLKDTSRLISIDAVPGTVYKVEATGAMVSLNSAVGLVHF 846
Query: 593 YCEMLPSDKYYTPKPIFKYKSAEE-----AYECELTLPSNAPFQTIVGPTSRNKNLSKQL 647
YC LP D+Y +P F + E+ Y C L LP NAPF+ + GP + L++Q
Sbjct: 847 YCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQA 906
Query: 648 VCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALS 707
VCL AC+KLH++GA D LLP + + +E P GT + +E + L
Sbjct: 907 VCLAACKKLHEMGAFTDMLLPDKGSGQDAEKADQDDEGEPVPGTARHREFYPEGVADVLK 966
Query: 708 GRW----GEKC--GVILHAYKFNFAC--------SIVTEIYSGFVLLIESELDNDVGNFE 753
G W E C + H Y +N C ++E+ S F +L +ELD +V +
Sbjct: 967 GEWVSSGKEVCESSKLFHLYMYNVRCVDFGSSKDPFLSEV-SEFAILFGNELDAEVLSMS 1025
Query: 754 LELYLVSKTV-KATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFL 812
++LY+ + KA+++ G + + +Q+S K F + + L V + S
Sbjct: 1026 MDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIV---LDVDVEPS------- 1075
Query: 813 KRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINW 846
+ W P+ YL +P+ NT + INW
Sbjct: 1076 ----TTPWDPAKAYLFVPV-TDNTSMEPIKGINW 1104
|
Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis pathway by cleaving primary miRNAs (pri-miRNAs) and precursor miRNAs (pre-miRNAs). Functions with DRB1/HYL1 and SERRATE proteins for accurate pri-miRNAs to miRNAs processing. Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved in the processing of natural siRNAs (nat-siRNAs, derived from cis-natural antisense transcripts) by cleaving 24 nucleotide nat-siRNAs into 21 nucleotide nat-siRNAs. Can produce RDR6-dependent endogenous ta-siRNAs derived from TAS1 and TAS2. Required for the production of 30-40 nucleotide bacterial-induced long siRNAs (lsiRNA). Acts redundantly with DICER-LIKE 3 (DCL3) to promote flowering via repression of FLOWERING LOCUS C (FLC). Represses antiviral RNA silencing through negative regulation of the expression of DCL4 and DCL3. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1604 | ||||||
| 296081735 | 1688 | unnamed protein product [Vitis vinifera] | 0.996 | 0.946 | 0.647 | 0.0 | |
| 359475987 | 1648 | PREDICTED: endoribonuclease Dicer homolo | 0.988 | 0.962 | 0.652 | 0.0 | |
| 330370549 | 1655 | ribonuclease III family protein DCL3 [Go | 0.972 | 0.942 | 0.633 | 0.0 | |
| 449489290 | 1639 | PREDICTED: LOW QUALITY PROTEIN: endoribo | 0.961 | 0.940 | 0.623 | 0.0 | |
| 255550219 | 1660 | Ribonuclease III, putative [Ricinus comm | 0.980 | 0.946 | 0.601 | 0.0 | |
| 356509849 | 1671 | PREDICTED: endoribonuclease Dicer homolo | 0.980 | 0.941 | 0.594 | 0.0 | |
| 224141703 | 1492 | dicer-like protein [Populus trichocarpa] | 0.893 | 0.960 | 0.605 | 0.0 | |
| 357465903 | 1758 | Endoribonuclease Dicer-like protein [Med | 0.980 | 0.894 | 0.554 | 0.0 | |
| 115441737 | 1651 | Os01g0909200 [Oryza sativa Japonica Grou | 0.947 | 0.920 | 0.496 | 0.0 | |
| 334185717 | 1580 | protein dicer-like 3 [Arabidopsis thalia | 0.934 | 0.948 | 0.496 | 0.0 |
| >gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2117 bits (5485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1093/1689 (64%), Positives = 1279/1689 (75%), Gaps = 91/1689 (5%)
Query: 1 MHSP--LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAK 58
MHSP N LKRSF E++ D + PSSS++S PR YQ KVFEVAK
Sbjct: 1 MHSPELANPLKRSFDEMNLKRDAD--DDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAK 58
Query: 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ--------QY 110
RRNTIAVL+TG GKTMIA+MLI++I QA+K++G K IIFLAPTVHLV+Q Q+
Sbjct: 59 RRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQACFFFIFSQF 118
Query: 111 DVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170
VI+ T FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL+ VC
Sbjct: 119 KVIKDSTGFEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVC 178
Query: 171 FIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELE 230
+++DECH ATGNHPYTKIMKEFYHKS +KPK+FGMTASPV+RKGVSS+MDCE QISELE
Sbjct: 179 LMIVDECHRATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELE 238
Query: 231 STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQG 290
S LD Q++TIED+TE+EVF+PSAKE RFYD S+F DLK KL+ SWSKFD L LQG
Sbjct: 239 SILDCQIYTIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQG 298
Query: 291 SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350
S + YKDMDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V AQEE E Y
Sbjct: 299 SPMTQYKDMDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFY 358
Query: 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410
RQSS QCK FL+EVL +IG LP D +L+ D KAVD GYI+ KLHELLQLF SFG
Sbjct: 359 RQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFG 418
Query: 411 KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF 470
+ +VLC+IFVERII AKV+ERF+KK+ +L+H TV+YLTGS +SVDAL PK Q+E LESF
Sbjct: 419 VARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESF 478
Query: 471 RGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
R GKVNLLFATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ +SQFI+MLERGN
Sbjct: 479 RSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGN 538
Query: 531 LKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLI 590
+QR++LFDIIRSE S+TDTA +RDP+ LKA T + SY V+STGASVT DSSV+LI
Sbjct: 539 TEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLI 598
Query: 591 HRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCL 650
HRYCE LP DKY+TPKP F + E YEC+LTLP NA FQTI+GP ++N +LSKQLVCL
Sbjct: 599 HRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCL 658
Query: 651 EACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRW 710
EAC+KLHQ+GAL+DHLLP VEEPSEN++I K S GAGTTKRKELHGTT ALSG W
Sbjct: 659 EACKKLHQMGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTW 718
Query: 711 GEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSS 769
G+K G I AYK +F+C+IV E+YSGFVLLIES+LD+DVGN E+ELYL+SK V+ +VSS
Sbjct: 719 GDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSS 778
Query: 770 SGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLL 828
GQV LDA+Q+ KA F ELFFN LFG+LF+ SKSSG REF L + SLWS S MYLL
Sbjct: 779 CGQVSLDAEQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLL 838
Query: 829 LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
LP+E N D SWRINW GIN CASVVEF++++S L N++ GN SPC T +T
Sbjct: 839 LPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETE 898
Query: 889 CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK--- 945
C +HLAN SV NLK+MVVLAIHTGRIYSI+++V ++SAESPFDG+ D +S
Sbjct: 899 CKSISTVHLANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYT 958
Query: 946 TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
TF YF+ KYGIVL++PGQPLL LKQSHN HNLLVNFND GG + M +K Q HV
Sbjct: 959 TFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEGGEALQTGQKMLNEKAQTHV 1018
Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
HMPPELLV ++VPI+V+KS YLLPS++ RLESLMLASQLREEI + I SSLILEA
Sbjct: 1019 HMPPELLVSIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGSQISSSLILEA 1077
Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
+TTL C ESFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLSARRSW VCNSTLHKLG
Sbjct: 1078 ITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLG 1137
Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPC 1185
TDR LQGYIRD AFDPRRWVAPGQ S+RPVPC CGVD LEVPLDGKF T+DTK+VVGK C
Sbjct: 1138 TDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSC 1197
Query: 1186 DMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLR 1245
D GHRWMGSKTIADC EALIGAYYVGGGL AAL++MKW GID +LE SLVD+ I ASLR
Sbjct: 1198 DRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLR 1257
Query: 1246 SYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ--------------- 1287
+Y+P+ NEI+ +ESKIGYEF+VK LL EAITHA+ QE YCYQ
Sbjct: 1258 TYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLIT 1317
Query: 1288 -----------------------------------NLYKHLQHCSTLLLSQITEYVKSFP 1312
NL +HLQHCS LLL QI EY K
Sbjct: 1318 WHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLS 1377
Query: 1313 KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELP 1372
+ + S K PKALGDL+ESI GA+LIDTKLNL+EVWRIFKP+LSPIVTPDKLELP
Sbjct: 1378 GSDDVPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELP 1437
Query: 1373 PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432
PLREL ELCDSLGYF+KE CT KGE+VHAELRLQ+ DVLLVGEG R++KAAKG+AA+QL
Sbjct: 1438 PLRELNELCDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQL 1497
Query: 1433 LKKLE--------VCEKRISKGA------SNTGKLGDDCRQTTKEDLPEPPSC-KRQKGT 1477
LK LE KR +GA S+ GD C Q+ ED E K+QK T
Sbjct: 1498 LKNLEKRGISYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSSELIKFHKKQKTT 1557
Query: 1478 EAAI----PAGDSCKKAYCM-TVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTE 1532
+ ++C + C + TPV+ INMKKGGPR+SL++LCK + WPMP+FE+ E
Sbjct: 1558 GMQLCTRTSIANNCLENACKPKLDTPVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKE 1617
Query: 1533 SKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHE 1592
+SR ++F EG E+R GF+SF+S I+LHIP G +EC GD RADKKSS DSAAL+MLHE
Sbjct: 1618 QRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHE 1677
Query: 1593 LERQGKIII 1601
L+R+GK+II
Sbjct: 1678 LQRRGKLII 1686
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2109 bits (5465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1083/1661 (65%), Positives = 1265/1661 (76%), Gaps = 75/1661 (4%)
Query: 1 MHSP--LNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAK 58
MHSP N LKRSF E++ D + PSSS++S PR YQ KVFEVAK
Sbjct: 1 MHSPELANPLKRSFDEMNLKRDAD--DDSNPPPSPLPSSSSSSKELSPRSYQWKVFEVAK 58
Query: 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118
RRNTIAVL+TG GKTMIA+MLI++I QA+K++G K IIFLAPTVHLV+QQ+ VI+ T
Sbjct: 59 RRNTIAVLDTGTGKTMIALMLIREIGQAVKADGRKLFIIFLAPTVHLVNQQFKVIKDSTG 118
Query: 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
FEVEEYYGAKGVDEW ++ W+KEI+++DVLVMTPQILLDALRKAFLSL+ VC +++DECH
Sbjct: 119 FEVEEYYGAKGVDEWSAKSWEKEISEHDVLVMTPQILLDALRKAFLSLETVCLMIVDECH 178
Query: 179 HATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238
ATGNHPYTKIMKEFYHKS +KPK+FGMTASPV+RKGVSS+MDCE QISELES LD Q++
Sbjct: 179 RATGNHPYTKIMKEFYHKSVDKPKIFGMTASPVIRKGVSSSMDCENQISELESILDCQIY 238
Query: 239 TIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKD 298
TIED+TE+EVF+PSAKE RFYD S+F DLK KL+ SWSKFD L LQGS + YKD
Sbjct: 239 TIEDRTELEVFIPSAKEINRFYDASQFHNLDLKAKLKSSWSKFDNLLLNLQGSPMTQYKD 298
Query: 299 MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358
MDDK K LRK+LS+ HAKILYCLD+LGLICAYEAVK+C+E V AQEE E YRQSS QCK
Sbjct: 299 MDDKLKALRKRLSNDHAKILYCLDDLGLICAYEAVKVCIENVSNAQEEFEFYRQSSSQCK 358
Query: 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418
FL+EVL +IG LP D +L+ D KAVD GYI+ KLHELLQLF SFG + +VLC+
Sbjct: 359 CFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSFGVARKVLCL 418
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLL 478
IFVERII AKV+ERF+KK+ +L+H TV+YLTGS +SVDAL PK Q+E LESFR GKVNLL
Sbjct: 419 IFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLESFRSGKVNLL 478
Query: 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
FATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ +SQFI+MLERGN +QR++LF
Sbjct: 479 FATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERGNTEQRDQLF 538
Query: 539 DIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLP 598
DIIRSE S+TDTA +RDP+ LKA T + SY V+STGASVT DSSV+LIHRYCE LP
Sbjct: 539 DIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSLIHRYCEKLP 598
Query: 599 SDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQ 658
DKY+TPKP F + E YEC+LTLP NA FQTI+GP ++N +LSKQLVCLEAC+KLHQ
Sbjct: 599 GDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSHLSKQLVCLEACKKLHQ 658
Query: 659 VGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVI 717
+GAL+DHLLP VEEPSEN++I K S GAGTTKRKELHGTT ALSG WG+K G I
Sbjct: 659 MGALDDHLLPYVEEPSENDIIVKSKGSAAGAGTTKRKELHGTTQTCALSGTWGDKIDGAI 718
Query: 718 LHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDA 777
AYK +F+C+IV E+YSGFVLLIES+LD+DVGN E+ELYL+SK V+ +VSS GQV LDA
Sbjct: 719 FQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNIEMELYLISKFVRTSVSSCGQVSLDA 778
Query: 778 DQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWSPSYMYLLLPLEIVNT 836
+Q+ KA F ELFFN LFG+LF+ SKSSG REF L + SLWS S MYLLLP+E N
Sbjct: 779 EQVMKAMRFHELFFNSLFGRLFIGSKSSGVRREFLLNTQQKSLWSSSNMYLLLPIESSNI 838
Query: 837 FGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIH 896
D SWRINW GIN CASVVEF++++S L N++ GN SPC T +T C +H
Sbjct: 839 PSDESWRINWPGINSCASVVEFLEKRSQLSTGNMNDDTGNPSPCSTGLVETECKSISTVH 898
Query: 897 LANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK---TFVNYFSE 953
LAN SV NLK+MVVLAIHTGRIYSI+++V ++SAESPFDG+ D +S TF YF+
Sbjct: 899 LANNSVHVNNLKNMVVLAIHTGRIYSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNN 958
Query: 954 KYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLV 1013
KYGIVL++PGQPLL LKQSHN HNLLVNFND G K M +K Q HVHMPPELLV
Sbjct: 959 KYGIVLMYPGQPLLLLKQSHNAHNLLVNFNDEDALQTGQK--MLNEKAQTHVHMPPELLV 1016
Query: 1014 RVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCE 1073
++VPI+V+KS YLLPS++ RLESLMLASQLREEI + I SSLILEA+TTL C E
Sbjct: 1017 SIEVPITVLKSSYLLPSLIHRLESLMLASQLREEI-AFTTGSQISSSLILEAITTLRCSE 1075
Query: 1074 SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGY 1133
SFSMERLELLGDSVLKYAVSCHLFL YPKKHEGQLSARRSW VCNSTLHKLGTDR LQGY
Sbjct: 1076 SFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGY 1135
Query: 1134 IRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG 1193
IRD AFDPRRWVAPGQ S+RPVPC CGVD LEVPLDGKF T+DTK+VVGK CD GHRWMG
Sbjct: 1136 IRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIVVGKSCDRGHRWMG 1195
Query: 1194 SKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINE 1253
SKTIADC EALIGAYYVGGGL AAL++MKW GID +LE SLVD+ I ASLR+Y+P+ NE
Sbjct: 1196 SKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEPSLVDEAIATASLRTYIPKANE 1255
Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ----------------------- 1287
I+ +ESKIGYEF+VK LL EAITHA+ QE YCYQ
Sbjct: 1256 IEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHR 1315
Query: 1288 ---------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDS 1320
NL +HLQHCS LLL QI EY K + +
Sbjct: 1316 DIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNP 1375
Query: 1321 GPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIEL 1380
S K PKALGDL+ESI GA+LIDTKLNL+EVWRIFKP+LSPIVTPDKLELPPLREL EL
Sbjct: 1376 LQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRELNEL 1435
Query: 1381 CDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCE 1440
CDSLGYF+KE CT KGE+VHAELRLQ+ DVLLVGEG R++KAAKG+AA+QLLK LE +
Sbjct: 1436 CDSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLE--K 1493
Query: 1441 KRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVV 1500
+ IS SN+ R+ DL S G + + Y V+
Sbjct: 1494 RGISYSRSNSK------RRKQGADLVGVSSSLNMGGDACGQSNNEDSSENYDFVFA--VI 1545
Query: 1501 APINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITL 1560
INMKKGGPR+SL++LCK + WPMP+FE+ E +SR ++F EG E+R GF+SF+S I+L
Sbjct: 1546 KSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISL 1605
Query: 1561 HIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
HIP G +EC GD RADKKSS DSAAL+MLHEL+R+GK+II
Sbjct: 1606 HIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLII 1646
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 2044 bits (5295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1049/1655 (63%), Positives = 1244/1655 (75%), Gaps = 95/1655 (5%)
Query: 33 DGPSSSTNSINFIPR--------------------IYQLKVFEVAKRRNTIAVLETGAGK 72
+ PSSS+ +F PR YQL+V+EVAKRRN IA+L+TG GK
Sbjct: 12 EDPSSSSKPKDFNPRGFALFSFSFLSVVVICVILSFYQLQVYEVAKRRNIIALLDTGVGK 71
Query: 73 TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE 132
TMIAVMLIKD QAI+S KKLIIFLAPTVHLV+Q +IR + EVE+YYGAKGVDE
Sbjct: 72 TMIAVMLIKDFGQAIESTESKKLIIFLAPTVHLVNQVCFLIRESLNLEVEQYYGAKGVDE 131
Query: 133 WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192
W CW+KE ++DVLVMTPQILLDALRKAFLSLD+V ++IDECH ATGNHPY KIMKE
Sbjct: 132 WTLDCWEKETKEHDVLVMTPQILLDALRKAFLSLDMVSLMIIDECHRATGNHPYAKIMKE 191
Query: 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPS 252
FYHKS+NKPK+FGMTASPVV KGV S+ +C+GQ+SELE LDS ++TIED+TEME VPS
Sbjct: 192 FYHKSNNKPKIFGMTASPVVSKGVLSSNNCDGQMSELECVLDSLIYTIEDRTEMEACVPS 251
Query: 253 AKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSD 312
AKESCRF+D ++F DLK K+E SW K D SLS LQ S +KDMDDK K LRK+LS+
Sbjct: 252 AKESCRFFDPAQFSSLDLKAKVEASWLKTDGSLSNLQSSLQTSHKDMDDKLKNLRKRLSN 311
Query: 313 YHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSAL 372
HAK+L+CLD LGLICAYEAV ICLE +L EE + YR+S LQ K FLEEV IG +L
Sbjct: 312 DHAKVLHCLDNLGLICAYEAVNICLENILDTTEESKAYRESVLQYKNFLEEVQCRIGESL 371
Query: 373 PLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432
PL DK FL+ GFDY KAVDLGYIS KLHELLQLF SFG++ QVLC+IFVERII AKV+ER
Sbjct: 372 PLGDKNFLNSGFDYLKAVDLGYISPKLHELLQLFQSFGETRQVLCLIFVERIITAKVIER 431
Query: 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492
F KKV L+H V+Y+TGS TSVD+L PK+QKE LESFR GKVNLLF TDV+EEG+HVPN
Sbjct: 432 FAKKVSCLSHFMVSYMTGSNTSVDSLAPKIQKETLESFRSGKVNLLFTTDVVEEGIHVPN 491
Query: 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTAL 552
C YVIRFDLPKTV SY+QSRGRARQ+NS+FI+MLERGN+KQRN+L+DIIRSE S+T++A+
Sbjct: 492 CCYVIRFDLPKTVRSYVQSRGRARQNNSEFIMMLERGNVKQRNQLYDIIRSEYSMTNSAI 551
Query: 553 SRDPEA--CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFK 610
RDP++ C LK T+ +T +IV++TGASVT DS+V+LIH+YC LP DKYYTPKP F+
Sbjct: 552 KRDPDSDPCLLKDHTFEETNVFIVDATGASVTADSAVSLIHKYCGKLPGDKYYTPKPNFQ 611
Query: 611 YKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
+ S+E Y+C+LTLP NA QTIVGP SRN +L+KQLVCLEAC++LHQ+GAL+DHL PS+
Sbjct: 612 FTSSEGLYKCKLTLPVNAAVQTIVGPPSRNSHLAKQLVCLEACKQLHQMGALDDHLTPSI 671
Query: 671 EEPSENNLISKKNES----LPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKFNF 725
EEPSEN ISK +S GAGTTKRKELHGTT I+AL G WGEK + AYKF+F
Sbjct: 672 EEPSENACISKGKDSGAGAGAGAGTTKRKELHGTTCIQALCGSWGEKSDDAVFFAYKFDF 731
Query: 726 ACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKC 785
C+I+T +YSGFVLLIES+L +DVGN E++L+L+ K VKA+VSS GQV L+A+QM KAK
Sbjct: 732 KCNIITVVYSGFVLLIESKLADDVGNTEMDLFLIGKMVKASVSSCGQVRLNAEQMMKAKR 791
Query: 786 FQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRI 844
FQE FFNGLFGKLFV SKSSG+ REF L+ +T+SLWSPS MYLLLPLE +T RI
Sbjct: 792 FQEFFFNGLFGKLFVGSKSSGAPREFLLRDKTSSLWSPSRMYLLLPLEDNST---DELRI 848
Query: 845 NWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDA 904
+W GI C EF+ + S LG Q ++ G N S T T C ++I AN SVDA
Sbjct: 849 HWPGITACTLAAEFLNKNSLLGTEQSDDGGSNPSLNSTGSPVTDCKETNIIRFANSSVDA 908
Query: 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVN---YFSEKYGIVLIH 961
+L++ VVLAIHTGRIY I+E V++ +AES F D S F N YF +KY IVL H
Sbjct: 909 NSLRNTVVLAIHTGRIYCIIEAVSDKTAESSFAETVDTVSSEFANFYEYFYKKYNIVLKH 968
Query: 962 PGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISV 1021
PGQPL+ LKQSHNPHNLLVNFND G S K S++G+ +KP+ HVHMPPELL+ +DVP+SV
Sbjct: 969 PGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAGVVNEKPRFHVHMPPELLLVLDVPVSV 1028
Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
+KSLYLLPS+M RLESLMLA+QLREEIN S N IPSS+ILEALTTL CCESFSMERLE
Sbjct: 1029 LKSLYLLPSLMHRLESLMLANQLREEINFCSSNIDIPSSMILEALTTLRCCESFSMERLE 1088
Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
LLGDSVLKYAVSCHLFL YP KHEGQLSARRS AVCNSTLHKLGTD K+QGYIRDSAFDP
Sbjct: 1089 LLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLAVCNSTLHKLGTDHKIQGYIRDSAFDP 1148
Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
RRWVAPGQ LRPVPC+CGVD+LEVPLD KF T+D KV VGK CD GHRW+ SKTI+DC
Sbjct: 1149 RRWVAPGQRVLRPVPCKCGVDSLEVPLDKKFQTEDPKVKVGKSCDRGHRWLCSKTISDCV 1208
Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
EALIGAYY+ GGL+AAL++MKWLGIDA+L+ +V + I +ASLR+YVP EI IESK+
Sbjct: 1209 EALIGAYYLSGGLVAALHVMKWLGIDAELDPLVVAEVINQASLRTYVPNY-EIHMIESKV 1267
Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQ---------------------------------- 1287
GY F+VKF LQEA+TH S+ E YCYQ
Sbjct: 1268 GYNFSVKFFLQEALTHESLHESYCYQRLEFLGDSVLDLLITQYLYNHHTNIDPGELTDLR 1327
Query: 1288 ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
+L+KHLQHCSTLL +QI+EYV+SF + TT PS+K PKALG
Sbjct: 1328 SASVNNENFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFTESDNTTRLDPSIKGPKALG 1387
Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1391
DL+ESIVGA+LIDT LNLD+VWRI +P+LSPIVTPDKLELPP REL ELCDSLGYF+KE
Sbjct: 1388 DLVESIVGAILIDTNLNLDKVWRIVEPLLSPIVTPDKLELPPFRELNELCDSLGYFIKEK 1447
Query: 1392 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTG 1451
C KGE+VHAEL LQL LLVGEG +RSRK AKGKAAS LLK LE ++G S
Sbjct: 1448 CKNKGEVVHAELLLQLDHDLLVGEGFDRSRKVAKGKAASCLLKDLE------NRGISRKK 1501
Query: 1452 KLGD--DCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGG 1509
+ D D QT ++D EP KRQ+ A I D KKA T TPV+ + KKGG
Sbjct: 1502 RKHDCVDSSQTMEDDSLEPTIPKRQR--RAEIQLLDESKKACSATPATPVIVTVKTKKGG 1559
Query: 1510 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVE 1569
PRT+LF+LCK +LWPMP+ + TE KS + EG E++ GF SFVSKI L++P + +E
Sbjct: 1560 PRTTLFELCKKLLWPMPSIKATEHKSSAPMEIGEGPERKKGFISFVSKIILNVPGYDIIE 1619
Query: 1570 CNGDPRADKKSSFDSAALIMLHELERQGKIIISSS 1604
C GD +ADKKSS DSAAL ML+ELE++GK+II +
Sbjct: 1620 CTGDAKADKKSSSDSAALFMLYELEQRGKLIIEET 1654
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2014 bits (5217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1622 (62%), Positives = 1223/1622 (75%), Gaps = 80/1622 (4%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
FIPR YQ++VFEV RRNTIAVL TG+GKTMIAVMLIK+I +A+KS+ KKLIIFLAPTV
Sbjct: 37 FIPRRYQMEVFEVGMRRNTIAVLGTGSGKTMIAVMLIKEIGKAMKSSSDKKLIIFLAPTV 96
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
HLVHQQ++VI+ HTDFEV EYYGA GVD+W+ CW+KE ++ DVLVMTPQILLDALRKA+
Sbjct: 97 HLVHQQFNVIKDHTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAY 156
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
L +C ++IDECH ATGNHPYTKIMKEFYHKSD+KPK FGMTASPV+RKGVSS++DCE
Sbjct: 157 FRLGTICLMIIDECHRATGNHPYTKIMKEFYHKSDSKPKXFGMTASPVIRKGVSSSVDCE 216
Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
QI++LES LD+QV+ IEDK E+E++VPSAKE C FY+ + +LK K+E W KFDA
Sbjct: 217 CQIADLESILDAQVYAIEDKKEVEIYVPSAKEICIFYEPAMPQTMELKAKIEALWFKFDA 276
Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA 343
SLS Q + YKD+D K K L+K+LS H KI YCLDELG++CAYEA+K+ E V
Sbjct: 277 SLSNSQEAMQGHYKDVDSKLKALKKRLSSDHLKITYCLDELGIMCAYEAIKVLFENVSVP 336
Query: 344 QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
EE ++YR+S LQ K+FLEE L VIG +L L ++ GFD KAV+LGYIS KL ELL
Sbjct: 337 NEESDVYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKAVELGYISPKLFELL 396
Query: 404 QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ 463
QLF SFG S QVLC+IFVERIIAA V+ER VKKV L+H TV+Y+TG SV AL PKVQ
Sbjct: 397 QLFESFGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVTGCDASVGALAPKVQ 456
Query: 464 KEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFI 523
KE LE F GK+NLLF+TDV+EEG+HVPNCS+V+RFDLPKTV SY+QSRGRARQ+NSQ+I
Sbjct: 457 KETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYI 516
Query: 524 LMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTT 583
L+LERGNLKQR LFD+IRS+RS+TD A+SRD +AC LK + ++T YIVE+TGASVT
Sbjct: 517 LLLERGNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMETDCYIVEATGASVTA 576
Query: 584 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNL 643
DSSV L+++YC+ LP DKY++PKPIF+ E +YEC+LTLP A QTIVGP++RN NL
Sbjct: 577 DSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTRNSNL 636
Query: 644 SKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPI 703
SKQLVCLEAC+KLHQ+GALNDHLLPSVEE SE+++ K N S AG+TKRKELHG T I
Sbjct: 637 SKQLVCLEACKKLHQMGALNDHLLPSVEEISESDMGLKSNASTSRAGSTKRKELHGRTAI 696
Query: 704 RALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKT 762
RALSG W E+ G AYKF+F+CS++ E+YSGFVLLIES+LD+DV NFELELYL+SK
Sbjct: 697 RALSGTWEEQVEGTTFQAYKFDFSCSVIYEVYSGFVLLIESKLDDDVSNFELELYLLSKM 756
Query: 763 VKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSG-SREFFLKRETNSLWS 821
VKA+VS G+VHLDA+Q++KAKCFQELFFNGLFG+LF+ SK++G R+F L+++TN LW
Sbjct: 757 VKASVSFGGEVHLDAEQITKAKCFQELFFNGLFGRLFIGSKTTGKKRDFLLQKDTNPLWI 816
Query: 822 PSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGG--NSSP 879
S MYLLLP+++ + W+I+W I+ C SVVEF+K+ S L A + G +SSP
Sbjct: 817 SSNMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNYGAGAISDSSP 876
Query: 880 CRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGN 939
R + +TG + VIH AN +D +LKD VVLAIHTGRIYSIVE+V+N+SAESPFDGN
Sbjct: 877 SRNNSTETGSNAASVIHFANCVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGN 936
Query: 940 TDD---DSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGM 996
+D D TF +YF+++YGI L P QPLLRLKQSHNPHNLLVNF D G SG
Sbjct: 937 SDKGPPDYITFADYFNKRYGISLSFPKQPLLRLKQSHNPHNLLVNFKDEGFDKL--PSGP 994
Query: 997 NTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFH 1056
K+PQMHVHMPPEL++ +DVP V+KS YLLPS++ R ESLMLASQLR+EIN HS +
Sbjct: 995 AFKRPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLIHRFESLMLASQLRKEINYHSNSLG 1054
Query: 1057 IPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
I SSLILEALTTLG CE+FS+ERLELLGDSVLKYAVSCHLFL +P+KHEGQLS+RR +
Sbjct: 1055 ISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVI 1114
Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1176
CN+TLH LGT LQGYIRDSAFDPRRWVAPGQ + RPVPC+CGVDT+EVPL KF T+D
Sbjct: 1115 CNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVDTVEVPLHDKFCTED 1174
Query: 1177 TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVD 1236
KVV+GK CD GHRW+ SKTIADCAEALIGAYYV GG+IAAL++MKWLGID +L+V+LV
Sbjct: 1175 PKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDVNLDVALVV 1234
Query: 1237 DCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ------ 1287
D IT ASLRS EI +ESKIGY+F VK LL EA+TH S QE YCYQ
Sbjct: 1235 DAITSASLRSCPLGDTEIATLESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLG 1294
Query: 1288 --------------------------------------------NLYKHLQHCSTLLLSQ 1303
NL +HLQHCS LL+SQ
Sbjct: 1295 DSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQ 1354
Query: 1304 ITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPI 1363
ITEYVK + +T K PK LGD++ESI GA+LIDTKLNLDEVW+I+KP+L+P
Sbjct: 1355 ITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPF 1414
Query: 1364 VTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKA 1423
VTPDKLELPPLRELIELCDSLGYF+K+ CT KGE HAELRLQL+D LL+GEG ER+RKA
Sbjct: 1415 VTPDKLELPPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQDSLLIGEGYERTRKA 1474
Query: 1424 AKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPA 1483
A+G+AA +LL +LE S+ S K + PS + +P+
Sbjct: 1475 ARGEAAHRLLAQLETRGISYSRSGSKKRK--------------QNPS---HDESAMVLPS 1517
Query: 1484 GDSCKKAYC-MTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFC 1542
+C C V TPV+ PIN+KKGGPR++LF+LCK + WPMPTF T E+KSR +
Sbjct: 1518 SVNCSTDACDPNVETPVIGPINLKKGGPRSTLFELCKKLQWPMPTFNTVENKSRVQIEIG 1577
Query: 1543 EGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIIIS 1602
EGLEKR GF+SF+S ITL IP G VEC G+ RADKKSSFDSA+L+ML EL++QG++II+
Sbjct: 1578 EGLEKRKGFNSFLSNITLQIPNAGYVECEGEARADKKSSFDSASLVMLQELQQQGRVIIN 1637
Query: 1603 SS 1604
S
Sbjct: 1638 DS 1639
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis] gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1954 bits (5063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1011/1681 (60%), Positives = 1237/1681 (73%), Gaps = 109/1681 (6%)
Query: 1 MHSPLNSLKRSFGEVHS-PNPPDMGSSGHDHAVDGPSSSTN-----------SINFIPRI 48
M N LKRSF E+++ + DMG +G +H D ++S F PR
Sbjct: 5 MEQDRNPLKRSFNEMNNLQDFVDMGLNGTNHHHDHDAASQKPDSTITTSTTTGKGFNPRS 64
Query: 49 YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
YQ+KVFEVA +RNTIAVLETGAGKTMIAVMLI++I QAIKSN FKKLIIFLAPTVHLV+Q
Sbjct: 65 YQVKVFEVAMKRNTIAVLETGAGKTMIAVMLIREIGQAIKSNDFKKLIIFLAPTVHLVNQ 124
Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
QY+VI+ +T+F+V EYYGAKG+D W + W+KEIN++DVLVMTPQILLDALRKAFL+L++
Sbjct: 125 QYEVIKDNTNFKVGEYYGAKGIDGWSMKVWEKEINEHDVLVMTPQILLDALRKAFLNLEM 184
Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
V ++IDECH TGNHP TKIMKEFYHK NKPK+FGMTASPVV+KGVSSA+DCE QISE
Sbjct: 185 VSLMIIDECHRTTGNHPCTKIMKEFYHKLSNKPKIFGMTASPVVQKGVSSAVDCEDQISE 244
Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
LE+ LDSQ++TIED+TEM+V VPSA+E C+FYD ++ SD+K K+E SWSKFDASL L
Sbjct: 245 LETILDSQIYTIEDRTEMDVHVPSAREICKFYDIAQLYSSDIKSKIEASWSKFDASLLSL 304
Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
QGS + YKD DD++KTL+++L + ++KIL CL+ELGLICAYEAVKICLE + +
Sbjct: 305 QGSIQSSYKDADDRYKTLQQRLYNDYSKILNCLEELGLICAYEAVKICLENS-PSTAAFD 363
Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
IYR+ SL+CKYFLEEVL +IG+ LP D LD GFDY KAV L YIS KL+ELLQ+FLS
Sbjct: 364 IYREISLKCKYFLEEVLSIIGTYLPHGDSYLLDLGFDYLKAVRLSYISPKLYELLQVFLS 423
Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
FG +VLC+IFV+RII AKV+ERFVKKV L H TV+Y+TGS TSVDALTPK Q+E +
Sbjct: 424 FGVDKEVLCLIFVDRIITAKVIERFVKKVAALVHFTVSYVTGSNTSVDALTPKTQRETMY 483
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
+FR GKVNLLF+TDV+ EG+HVPNCS VI FDLPKTV Y QSRGRARQ++SQ+I+ML+R
Sbjct: 484 AFRSGKVNLLFSTDVLREGIHVPNCSCVICFDLPKTVCCYAQSRGRARQNDSQYIIMLQR 543
Query: 529 GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
GN+KQR++LFD IRSE VT+TA++RDP+ LK C +T++YIV+ TGASVT DSSV
Sbjct: 544 GNVKQRDQLFDFIRSEWLVTNTAINRDPDVWTLKTCVPEETEAYIVDVTGASVTADSSVT 603
Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 648
LI RYC LPSD+Y+TP+P F+++ E++++C++ LP++A FQTIVGP R++ L+KQL
Sbjct: 604 LIQRYCSKLPSDRYFTPRPTFEFECFEQSFQCKMMLPASAAFQTIVGPVCRSQQLAKQLA 663
Query: 649 CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG 708
CLEAC++LHQ+GAL+DHLLPSVEEP+E++ ++ SL GAGTTKRKELHGTTPI ALSG
Sbjct: 664 CLEACKQLHQMGALDDHLLPSVEEPTEDDHTVRRKGSLAGAGTTKRKELHGTTPIHALSG 723
Query: 709 RWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV 767
WGE G HAYKF F+CSIV+E YSG++LLIES+LD+DVGN EL+L+LV KTV+A+V
Sbjct: 724 SWGENLDGATFHAYKFEFSCSIVSEKYSGYILLIESKLDDDVGNIELDLFLVRKTVRASV 783
Query: 768 SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMY 826
SS GQVHLDA+QM KAKCF ELFFN LFGKLF SKSS S REF L++ET+ LW S MY
Sbjct: 784 SSCGQVHLDAEQMMKAKCFHELFFNALFGKLFSGSKSSRSPREFLLQKETSLLWILSNMY 843
Query: 827 LLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCK 886
LLLPLE + D SW+INW G+N C++VVEF+K+ FLGA N R
Sbjct: 844 LLLPLEAFSASSDESWKINWRGVNGCSNVVEFLKKNCFLGAEHYNGE-------RVRSSV 896
Query: 887 TGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFD---GNTDDD 943
T C G + +H AN SVD + +KDMVVLAIHTG+IYS+VE+V ++SAESPF+ G
Sbjct: 897 TECSGGNAVHFANISVDVERVKDMVVLAIHTGKIYSVVEVVGDASAESPFEQNVGGAPSK 956
Query: 944 SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQM 1003
TF YF++KYGIVL+ P QPLL LKQSH PHNLL ++ K G+ K +
Sbjct: 957 FSTFSEYFNKKYGIVLLRPRQPLLLLKQSHKPHNLLNPPDE-----DTLKDGLVVAKQRQ 1011
Query: 1004 HVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLIL 1063
MPPELLV +DVPI +KS YLLPS+M RLESLMLASQLR+EI C NFHIPS LIL
Sbjct: 1012 FARMPPELLVSIDVPIQTLKSSYLLPSLMYRLESLMLASQLRQEIACQVSNFHIPSLLIL 1071
Query: 1064 EALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHK 1123
EA+TT CE SMERLELLGDSVLKY+VSC LFL YP KHEGQLSA+R+ AVCNSTLH+
Sbjct: 1072 EAITTPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQ 1131
Query: 1124 LGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGK 1183
LG KLQGYIRDSAF PR WVAPGQ V C CGVDTLEVPLD KF T+D KV +
Sbjct: 1132 LGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKFQTEDPKVQIAI 1191
Query: 1184 PCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRAS 1243
C GHRWM SKTI+DC EA+IGAYYV GGL+AAL++M+WLG+D + + SLVD I AS
Sbjct: 1192 CCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGMDVEFDPSLVDKIIKTAS 1251
Query: 1244 LRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ------------- 1287
+RSY P+ +EIK IESK+GY F+VKFLLQEA+THAS+QE YCYQ
Sbjct: 1252 VRSYTPKEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLL 1311
Query: 1288 -------------------------------------NLYKHLQHCSTLLLSQITEYVKS 1310
+LYKHLQHCSTLLLSQI EY++S
Sbjct: 1312 ITWHLYQNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLES 1371
Query: 1311 FPKPGETTD-SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKL 1369
F + E +GP K PKALGDLLESI GA+LID KLNLDEVWRIF P+LSP+ TP L
Sbjct: 1372 FHESDEVAKATGP--KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNL 1429
Query: 1370 ELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAA 1429
ELPPLREL++LC+SLGYF+KE C ++VHAELRLQL DVLLVG G +RSRKAAKGKAA
Sbjct: 1430 ELPPLRELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAA 1489
Query: 1430 SQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPP---------SCKRQKGTEAA 1480
+ LLKKLE ++G + + +Q + + P K+ K E
Sbjct: 1490 THLLKKLE------NRGITYSWGHSKRRKQDSNHVVDSSPLDITNDKAKDHKKPKKLENQ 1543
Query: 1481 IPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLV 1540
PAG ++ ++ INMKKGGPRT LF+LCK + W PT+ +TE+KS T ++
Sbjct: 1544 SPAGSGGDPSF-----AGIIEAINMKKGGPRTDLFELCKKVQWTTPTYSSTENKSSTPIL 1598
Query: 1541 FCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKII 1600
F EG+E+ ++SFVS ITL+IP +G +EC GDPR DKKSS D+AAL ML+EL++QG +I
Sbjct: 1599 FDEGIER---YNSFVSTITLNIPFYGTIECTGDPRPDKKSSCDTAALAMLYELQKQGLLI 1655
Query: 1601 I 1601
I
Sbjct: 1656 I 1656
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1900 bits (4923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1683 (59%), Positives = 1227/1683 (72%), Gaps = 110/1683 (6%)
Query: 2 HSPLNSLKRSFGEVHSPNPPDMGSSGHDHAVD------------GPSSSTNSINFIPRIY 49
HS S KR+ + P+ DH D PS + N PR Y
Sbjct: 10 HSQDQSRKRNLPDADDSPAPNFHIDSSDHNQDQSKKRKQPNDEDSPSLESPCSNMNPRRY 69
Query: 50 QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109
Q++V+EVA+RRNTIAVL+TG+GKT+IAVML+K++ QAIK++G KKLIIFLAPTVHLV+QQ
Sbjct: 70 QIEVYEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLIIFLAPTVHLVNQQ 129
Query: 110 YDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV 169
+ I+ TDF+VEEYYGAKGVD W + W+KEI+ NDVLVMTPQILLDALRKAFL ++++
Sbjct: 130 FKNIKFLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMI 189
Query: 170 CFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISEL 229
C IVIDECH GNHPYTKIMKEFYH+++ KPK+FGMTASPV +KGVSS MDCE QISEL
Sbjct: 190 CLIVIDECHRTIGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEDQISEL 249
Query: 230 ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ 289
ES LDSQ +T+ED+TEM+ VPSAKESCR+YDQ++F LK K+E KFDA LS+ Q
Sbjct: 250 ESILDSQRYTVEDRTEMDRCVPSAKESCRYYDQARFSALSLKPKIEALSFKFDALLSENQ 309
Query: 290 GSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349
+ YKD+++K KTL +++S+ AKIL+CL++LG++CAYEAVKIC E K++ ECEI
Sbjct: 310 SN----YKDVENKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGECEI 365
Query: 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSF 409
YR+ LQC FLEEV+ +I +L LADK L+ F+YS+A DLGYIS KL EL++LF SF
Sbjct: 366 YRKGYLQCITFLEEVIKLIEESLHLADKKILEVDFNYSQAEDLGYISPKLIELIKLFQSF 425
Query: 410 GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLES 469
G+S+QVLC+IFV+RII AKV++RF K VP ++H TV+YLTG+ TSVDAL PK QKE+L+S
Sbjct: 426 GESSQVLCLIFVDRIITAKVIQRFAKTVPNISHFTVSYLTGNNTSVDALAPKRQKEILDS 485
Query: 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERG 529
FR GKVNLLF TDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGR+RQ NSQF++MLERG
Sbjct: 486 FRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERG 545
Query: 530 NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNL 589
NLKQR++LFDIIRSERS+TD ++ ++ E+ L+AC KT +Y VESTGAS T DSSV+L
Sbjct: 546 NLKQRDQLFDIIRSERSMTDASIYKEHESS-LRACMVGKTNAYYVESTGASFTLDSSVSL 604
Query: 590 IHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVC 649
IHRYC LP DKY KP F++ S E Y+C+L LPSN+ FQTI+GP+ ++ L+K L C
Sbjct: 605 IHRYCGTLPRDKYSCVKPNFEFLSVEGGYQCKLILPSNSAFQTIIGPSGKDMRLAKHLAC 664
Query: 650 LEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGR 709
EAC+KLHQ+GALN+HL+P +E+ SE++ I K ES GAGTTKRKELHG I ALSG
Sbjct: 665 FEACKKLHQMGALNEHLVPLIEDSSEDDHIVKNKESSSGAGTTKRKELHGKANIHALSGA 724
Query: 710 WGEKCG-VILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVS 768
WG+K V +AYKF F C+IV+EIYSGF LLIESELD DVGN L+LYLVSK VKA+VS
Sbjct: 725 WGDKLTRVKFNAYKFEFTCNIVSEIYSGFALLIESELDEDVGNVNLDLYLVSKIVKASVS 784
Query: 769 SSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLL 828
S GQV LDA+QM +AKCF ELFFNGLFG+L +KSKS+G REF L+++TNSLWSP ++YLL
Sbjct: 785 SCGQVDLDAEQMMRAKCFHELFFNGLFGRLVLKSKSAGEREFLLQKDTNSLWSPKHLYLL 844
Query: 829 LPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTG 888
LPLE +N +GS +INW GIN CAS ++F++ K L C++NG +SP TS +
Sbjct: 845 LPLEKLNDICEGSLQINWCGINSCASAIKFLRRKFSLVTGDCDDNGTITSPHDTSSSEME 904
Query: 889 CHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDD--DSKT 946
C G + IH AN VDA N+KD VVLAIHTG+IY I+EI +N SAESPF GN + +S T
Sbjct: 905 CVGANKIHFANCVVDADNIKDRVVLAIHTGKIYCIIEIDSNLSAESPFYGNNEKSKESIT 964
Query: 947 FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVH 1006
F +YFS+ YGI L HPGQP+LRLKQSHNPHNLL NF + K SK G K +HVH
Sbjct: 965 FSDYFSKSYGISLRHPGQPMLRLKQSHNPHNLLFNFYE---EDKSSKIGPAASKLPVHVH 1021
Query: 1007 MPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEAL 1066
+PPELL +DV V+KSLYLLPS+M R+ESLML+SQLREEI+ + F+I SSLILE+L
Sbjct: 1022 IPPELLYILDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKFNIRSSLILESL 1081
Query: 1067 TTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGT 1126
TTL C ESFSMERLELLGDSVLKY VSCHLFL YPKKHEGQLSARRS AVCNSTLHKLGT
Sbjct: 1082 TTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGT 1141
Query: 1127 DRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCD 1186
DRKLQGYIRDSAF+PRRWVAPGQ S+ V C+CG++TLEVPLD KF T+D KVVVGK CD
Sbjct: 1142 DRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDAKFHTEDPKVVVGKFCD 1201
Query: 1187 MGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRS 1246
GH WM SKTIADC EALIGAYYV GGL A+L +MKWLGI A+LE+SLVD+ IT ASLR+
Sbjct: 1202 RGHCWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVDEAITAASLRT 1261
Query: 1247 YVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQEF---YCYQ---------------- 1287
+P+ +EI +E KIGYEF+VK LL EAITH S +E CY+
Sbjct: 1262 CLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITW 1321
Query: 1288 ----------------------------------NLYKHLQHCSTLLLSQITEYVKSFPK 1313
NL++HL H S LLLSQI+EYVK +
Sbjct: 1322 HLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLLSQISEYVKVISE 1381
Query: 1314 PGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPP 1373
S PS+ APKALGD++ESIVGA+LIDTKL+LD+VW +F +LSPIVTPDKLELPP
Sbjct: 1382 SDPR--SLPSISAPKALGDVVESIVGAILIDTKLSLDQVWNVFYSLLSPIVTPDKLELPP 1439
Query: 1374 LRELIELCDSLGYF--VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431
REL ELCDSLGYF VKENC G +H E+ +QL + LLV EG+ ++K AKG+AA
Sbjct: 1440 FRELNELCDSLGYFVKVKENCEKVGSAMHVEVSVQLPNALLVREGKGANKKTAKGEAAFY 1499
Query: 1432 LLKKLEVCEKRISKGA-------------SNTGKLGDDCRQTTKEDLPEPPSCKRQKGTE 1478
LLK LE ++ IS G+ + L D +E EP S KR E
Sbjct: 1500 LLKDLE--KQGISHGSFMSKGKRDNPDHVYGSSHLKMDSSILIEEHSSEPASHKRHILDE 1557
Query: 1479 AAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTL 1538
+ T + INMKKGGPRT+L+++CK + WP+PTF++TE K R+L
Sbjct: 1558 TNL---------------TAINLSINMKKGGPRTTLYEVCKKLQWPVPTFDSTEYKDRSL 1602
Query: 1539 LVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGK 1598
CEGL+ G + FVSKITL IP +GN+E G+ R+DKK+SFDSAA+ ML EL+R GK
Sbjct: 1603 FESCEGLQGSKGQNCFVSKITLCIPNYGNIESKGEARSDKKTSFDSAAVQMLLELQRLGK 1662
Query: 1599 III 1601
+ I
Sbjct: 1663 VEI 1665
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa] gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1890 bits (4897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 975/1610 (60%), Positives = 1163/1610 (72%), Gaps = 177/1610 (10%)
Query: 49 YQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
YQ KVFEVA +RNTIAVLETGAGKTMIAVMLIK I QA+ +G K+LI+FLAPTVHLV+Q
Sbjct: 1 YQSKVFEVAVKRNTIAVLETGAGKTMIAVMLIKQIGQAVFYSGVKRLILFLAPTVHLVNQ 60
Query: 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
I+ T+F V EYYGAKG+DEW + W+KEI+++DVLVMTPQILLDALRKAFL+L +
Sbjct: 61 AC-FIKSQTNFRVGEYYGAKGIDEWSLKSWEKEIDEHDVLVMTPQILLDALRKAFLNLKM 119
Query: 169 VCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE 228
V +++DECH +TGNHPY KIMK
Sbjct: 120 VSLLILDECHRSTGNHPYKKIMK------------------------------------- 142
Query: 229 LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKL 288
++TIED+ E+ V+VPSAKE CRFYD++ +LK K+E SWSKFDAS+ L
Sbjct: 143 --------IYTIEDRAEVHVYVPSAKELCRFYDKAWCSYVELKDKIEASWSKFDASMLAL 194
Query: 289 QGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348
QGS +CYKDMDDK K RKQLS HAKIL CL++LGLICAYEA+K+CLE EC+
Sbjct: 195 QGSTQSCYKDMDDKLKATRKQLSKDHAKILNCLEDLGLICAYEAIKVCLENAGNPTGECK 254
Query: 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS 408
+Y++ SLQC+YFLE+VLH+IG +L D LD GFD S A+ GYIS KLHELLQLFLS
Sbjct: 255 LYQEISLQCRYFLEDVLHIIGESLLHGDNFSLDHGFDCSAALGFGYISPKLHELLQLFLS 314
Query: 409 FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLE 468
FG++ +VLC+IFVERII AKVVERF+KKV L H TV+YLTG+ S DAL PK+Q E LE
Sbjct: 315 FGEAREVLCLIFVERIITAKVVERFMKKVEVLAHFTVSYLTGTNASADALAPKMQMETLE 374
Query: 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLER 528
SFR GKVNLLFATDV+EEG+HVPNCS VIRFDLPKTV SY+QSRGRARQ+NS FI MLER
Sbjct: 375 SFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQNNSHFITMLER 434
Query: 529 GNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
GN KQR++LF+IIRSE S+TDTA++RDP LKAC K+Y+V+ TGASVT DSS
Sbjct: 435 GNTKQRDQLFEIIRSEWSMTDTAINRDPNVWNLKACASEAAKAYVVDVTGASVTADSS-- 492
Query: 589 LIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLV 648
LP NA FQT+VGPT RN+ L+KQLV
Sbjct: 493 -----------------------------------LPPNAAFQTLVGPTCRNQQLAKQLV 517
Query: 649 CLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSG 708
CLEAC+KLHQ+GAL+DHLLPSVEEPSE ++ K+ S GAGTTKRKELHGT I ALSG
Sbjct: 518 CLEACKKLHQMGALDDHLLPSVEEPSEIAVVKSKSTS-AGAGTTKRKELHGTACIHALSG 576
Query: 709 RWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATV 767
WGEK G HAYKF+F+CSIV++IYSGF+LLIES+LD+DVGN EL+LYLV+K VK+++
Sbjct: 577 SWGEKLDGATFHAYKFDFSCSIVSQIYSGFILLIESKLDDDVGNIELDLYLVAKIVKSSI 636
Query: 768 SSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYL 827
SS G VHLDA QM+KAK FQE FFNGLFGKLF SKSS REF L++ET LWSPS MYL
Sbjct: 637 SSCGVVHLDAAQMTKAKRFQEFFFNGLFGKLFTGSKSS--REFLLQKETTLLWSPSNMYL 694
Query: 828 LLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKT 887
LLPLE + + +I+W GI C+SVVE++K SFL AA+ + GGN P
Sbjct: 695 LLPLEPWSISSNDWCKIDWKGIEACSSVVEYLK-NSFL-AARSYSGGGNPLPDNVQSSTI 752
Query: 888 GCHGKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK-- 945
C+G ++IH AN V+ +N+KDMVVLAIHTGRIYSIV++VN+SSAES F+GN D+ ++
Sbjct: 753 ECNGTNLIHFANALVNVENIKDMVVLAIHTGRIYSIVKVVNDSSAESAFEGNADNVTEFS 812
Query: 946 TFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHV 1005
T+ YF+++YGIVL+HPGQPLLRLKQSHNPHN LVNFND G SK GM +K Q HV
Sbjct: 813 TYTEYFNKRYGIVLMHPGQPLLRLKQSHNPHNHLVNFNDEGLLVCDSKDGMVGRKQQQHV 872
Query: 1006 HMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEA 1065
HMPPELL+++DVPISVVKS+YL+PS+M RLE LMLASQLR+EI+CH+ NF+IPSSLILEA
Sbjct: 873 HMPPELLIKIDVPISVVKSIYLMPSLMHRLECLMLASQLRQEIDCHAPNFYIPSSLILEA 932
Query: 1066 LTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG 1125
+TTL CCESFSMERLELLGDSVLKYAVSCHLFL YP KHEGQLS+ RS AVCNSTLHKLG
Sbjct: 933 ITTLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCNSTLHKLG 992
Query: 1126 TDRKLQGYIRDSAFDPRRWVAPGQLSLR-PVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184
TD K+QGYI DSAFDPRRW APGQ S+R P PC+CGVDTLEVPLD KF T+ V VGKP
Sbjct: 993 TDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTESAIVKVGKP 1052
Query: 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASL 1244
CD GHRWMGSKTI+DC E++IGAYYV GGLIAA+++MKW GI+A+L+ SL+ + IT ASL
Sbjct: 1053 CDSGHRWMGSKTISDCVESVIGAYYVSGGLIAAIHVMKWFGINAELDPSLISEAITSASL 1112
Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCY--------------- 1286
RSY+P+ +EIK +ESK+GY F VKF+LQEA+THAS+QE YCY
Sbjct: 1113 RSYIPKEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLI 1172
Query: 1287 -----------------------------------QNLYKHLQHCSTLLLSQITEYVKSF 1311
QNLY HL HCSTLL SQITEYV SF
Sbjct: 1173 TWHLYQSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSF 1232
Query: 1312 PKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLEL 1371
+ + T KAPKALGDL+ESI GA+LIDTK NLD VWRIFKP+LSPIVTP+KLEL
Sbjct: 1233 HESDQGT------KAPKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLEL 1286
Query: 1372 PPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431
PPLREL+ELCDS+G FVKE CT K EMVHA+L +QL + LL GEG E++RKAAKGKAAS
Sbjct: 1287 PPLRELVELCDSIGVFVKEKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASC 1346
Query: 1432 LLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAY 1491
LLKKL+VC A + E L + P
Sbjct: 1347 LLKKLQVCNSGNCNHAFFCFLMNSIVPSNIVEYLAKSPP--------------------- 1385
Query: 1492 CMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGF 1551
V+ IN KKGGPRTSL+ LCK + W MPTF+TTE+KSRT + F EG +KRTGF
Sbjct: 1386 -----FAVIESINKKKGGPRTSLYDLCKKVQWTMPTFDTTETKSRTAIEFGEGPDKRTGF 1440
Query: 1552 SSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
+S+VSKI ++IP +G VEC G+ ADKK+S+DSAAL ML+ELE++G++II
Sbjct: 1441 NSYVSKIIMNIPSYGVVECAGEASADKKTSYDSAALAMLNELEKRGQLII 1490
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula] gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1811 bits (4690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1732 (55%), Positives = 1207/1732 (69%), Gaps = 159/1732 (9%)
Query: 7 SLKRSFGEVHS-PNPPDMGSSGHDHAVDGPSSSTNSI-NFIPRIYQLKVFEVAKRRNTIA 64
+LKR F +++ PN D P+ I N +PR QL+ FEVAK+RNTIA
Sbjct: 22 NLKRKFDHLYAKPNVEQ----------DSPAQEETLIANLVPRRDQLEAFEVAKKRNTIA 71
Query: 65 VLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124
+++TG+GKT+IA++LIK+ QAI+S+G KKLI+FLAPTVHL Q I+++TD +VEEY
Sbjct: 72 IMDTGSGKTLIAILLIKETGQAIRSSGVKKLIVFLAPTVHL---QCKNIKLNTDLQVEEY 128
Query: 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184
YG+KGVD W+ + WQKEI+ NDV+VMTPQILLDA RKAFLS++++C +VIDECH A+GNH
Sbjct: 129 YGSKGVDTWNLKSWQKEISDNDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNH 188
Query: 185 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT 244
PY KIM EFYH+++ KPK+FGMTASPV ++GVSS + CEGQIS+LE+ LDS+ + ++D+T
Sbjct: 189 PYAKIMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSRSYVVKDRT 248
Query: 245 EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
EM+V++PSAKESCRFYD ++F LK K+E SWSK D LS+ Q YKDMD K K
Sbjct: 249 EMDVYIPSAKESCRFYDPARFHALSLKPKIEASWSKCDVLLSEFQSD----YKDMDQKFK 304
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
L +++S+ AKILYCL++LGL+CAYEA KIC +K K ECE+YR+++LQC +EEV
Sbjct: 305 ALHQRMSNELAKILYCLEDLGLLCAYEAAKICQQKFSKIHGECEVYRKANLQCVTIIEEV 364
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG-------------- 410
+ +I +L LAD++ LD FD SKAV +GYIS KL EL++LF +FG
Sbjct: 365 IKIIEESLHLADEMILDVEFDCSKAVGMGYISPKLLELIKLFETFGYVFTKVTLALNVFT 424
Query: 411 -----------------KSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
+ +Q+LC+IFVERII AKV+ERFVKKV ++HLTVAY+TGS T
Sbjct: 425 RTNIGINCISINEYKRVEPSQLLCLIFVERIITAKVIERFVKKVSQISHLTVAYVTGSNT 484
Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
S DAL K QKE+L+SFR GKVNLLF TDV+EEG+HVPNCS VIRFDLP TV SYIQSRG
Sbjct: 485 SADALARKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRG 544
Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573
R+R+ NSQFILMLERGNLKQRN+LFDIIRSERS+ D A+S+D E+ L+A T KT+SY
Sbjct: 545 RSRRANSQFILMLERGNLKQRNQLFDIIRSERSMNDAAVSKDHES-NLRAFTVRKTESYC 603
Query: 574 VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQT 632
V+STGASVT DSSV+LI++YCE LP DKY + KP F E + C+L LP NA FQT
Sbjct: 604 VDSTGASVTLDSSVSLINQYCEKLPRDKYSSAKPNFVSLPMEGGGHVCKLILPPNAAFQT 663
Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTT 692
+VGP+ ++ +K LVCLEAC+KLHQ+GALNDHL+P VE+P E + I K ES A
Sbjct: 664 LVGPSGKDVRQAKTLVCLEACKKLHQMGALNDHLVPFVEDPLEADNIIKNKESSAAAAAG 723
Query: 693 ----KRKELHGTTPIRALSGRWGEKC-GVILHAYKFNFACSIVTEIYSGFVLLIESELDN 747
KRKELHGT +RAL G WG+K G HAYKF F C+IV+EIYSGFVLL+ES+LD+
Sbjct: 724 AGTTKRKELHGTASVRALCGSWGDKPDGAKFHAYKFEFKCNIVSEIYSGFVLLVESKLDD 783
Query: 748 DVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKS-SG 806
DVGN EL+LYL+SK VK +V S GQV LDA+Q++KAK F ELFFNGLFG+L KS + G
Sbjct: 784 DVGNIELDLYLISKMVKTSVISCGQVDLDAEQVTKAKGFHELFFNGLFGRLIRKSTTVQG 843
Query: 807 SREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEK-SFL 865
REF L++++ LWSP YLLLPLE N S +I+WS IN CAS +EF++++ S +
Sbjct: 844 EREFLLQKDSELLWSPKNSYLLLPLEKSNDICIRSLQIHWSAINSCASAIEFVRQRFSLV 903
Query: 866 GAAQCNNNGGNSSPCRTS-------PCKTG------------------CHGKDVIHLANG 900
+N+ S PC T PC T C ++ H AN
Sbjct: 904 TEVSDDNSKIISPPCDTDNSKIISPPCDTDNRKIISPPCDTRSSSDMECESTNMFHFANC 963
Query: 901 SVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTD----DDSKTFVNYFSEKYG 956
VD ++KD V LAIHTG++Y I+++V+NSSAESPFDGN+D +D TF YF ++YG
Sbjct: 964 VVDVSSVKDNVALAIHTGKVYCIIDVVDNSSAESPFDGNSDKSGAEDKMTFTQYFQKRYG 1023
Query: 957 IVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016
I L HP QPLLRLKQ HN HNL +N + G K S+ G K +HVH+P ELL +D
Sbjct: 1024 ITLRHPEQPLLRLKQGHNAHNLFLNLPEEDGGDKSSQVGPVAPKVPVHVHIPSELLCLLD 1083
Query: 1017 VPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFS 1076
V V KS+YLLPS+M R+ESLML+SQLR EIN H+ NF IPSSL+LEALTTL CCE FS
Sbjct: 1084 VKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDNFKIPSSLVLEALTTLRCCEKFS 1143
Query: 1077 MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136
MERLELLGDSVLKYAVSCHL+L YPKKHEG LS+ R WAV NSTLHKLGTD LQGYIRD
Sbjct: 1144 MERLELLGDSVLKYAVSCHLYLKYPKKHEGHLSSLRQWAVRNSTLHKLGTDHNLQGYIRD 1203
Query: 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKT 1196
SAF+PRRW+APGQ + VPC+CG++TLEVPLD KF T+D KVVVGK CD GHRWM SKT
Sbjct: 1204 SAFEPRRWIAPGQDCIHTVPCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKT 1263
Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
IADC EALIGAYYVGGGLIA+L+MMKWLGID+ LE S+VD IT ASL +Y P++NEI
Sbjct: 1264 IADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIAS 1323
Query: 1257 IESKIGYEFTVKFLLQEAITHASVQEF---YCYQ-------------------------- 1287
+E+KIGYEF+VK LL EA TH S E CY+
Sbjct: 1324 LEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEID 1383
Query: 1288 ------------------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPS 1323
NL++HL H S LL SQI EY K +P +
Sbjct: 1384 PGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQG 1443
Query: 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDS 1383
+KAPKALGDL+ESI GA+LIDTKL+LD+VW++F P+LSPIVTP+KLELPPLREL++L DS
Sbjct: 1444 IKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLSDS 1503
Query: 1384 LGYFVKENCT--LKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441
LGYFVK + KG M H E+R+QL + LV EG+ ++K+AKG AA QLLK LE ++
Sbjct: 1504 LGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLE--KR 1561
Query: 1442 RISKGASNTGKLGD----DCRQTTKEDLPEPPSCKRQK-------GTEAAIPAGDSCKKA 1490
IS +S K+ D C+ ++ P+P + K+ K E+ D KA
Sbjct: 1562 GISYSSSKGKKVMDYTIPACQ--IEDQPPKPVAIKKPKLDKTNSAADESTGDLKDVSSKA 1619
Query: 1491 YCMTVGTPVVAPINM-KKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT 1549
+ PVV+ I M KKGGPR+ L+++CK LWP+P+F++TE K RTL C+GLE
Sbjct: 1620 SDTSGSIPVVSSIKMNKKGGPRSELYEVCKKKLWPLPSFDSTEYKDRTLFESCKGLEGSK 1679
Query: 1550 GFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
G + FVSKITL IP +G+++C G+ R+DKKSS+DSAA+ L+EL+R GKI+I
Sbjct: 1680 GLNCFVSKITLGIPGYGDIKCQGEARSDKKSSYDSAAVQALYELQRLGKIMI 1731
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group] gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName: Full=Dicer-like protein 3a; Short=OsDCL3a gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group] gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1512 bits (3914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1656 (49%), Positives = 1061/1656 (64%), Gaps = 137/1656 (8%)
Query: 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102
+F PR YQL V+EVA RRNTIA+L+TGAGKTMIAVMLIK+ + ++ K+IIFLAPT
Sbjct: 29 DFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88
Query: 103 VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
V LV QQ +VI +HTDFEVE+YYGAKGVD+W WQ++I+K V+VMTPQ+ L ALR A
Sbjct: 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148
Query: 163 FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDC 222
FL LD+V ++ DECHHATGNHPYT+IMKEFYHKS++KP VFGMTASPV+RKG+SS +DC
Sbjct: 149 FLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDC 208
Query: 223 EGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFD 282
EGQ ELE+ LD++++T+ D+ E+E VPSAKE CR+YD C DL +L V SK+D
Sbjct: 209 EGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYD 268
Query: 283 ASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK--- 339
A +++LQ + + YKD DD K +++LS AKI YCLD++GLICA EA KIC+E+
Sbjct: 269 ALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQE 328
Query: 340 ------VLKAQEE------CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYS 387
V+ A ++ ++ ++S F EE LH+I L + L+
Sbjct: 329 KGWLKEVVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCV 388
Query: 388 KAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAY 447
+A GYIS KL+EL+Q+F SF S C+IFV+R I A+V++R +KK+ L H TV++
Sbjct: 389 EAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSF 448
Query: 448 LTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507
LTG +SVDALTPK+QK+ L+SFR GKVNLLF TDV EEG+HVP CS VIRFDLP+T S
Sbjct: 449 LTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRS 508
Query: 508 YIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYV 567
Y+QSRGRARQ +SQ+ILM+ERGN+KQ + + I+RSE S+ A SR+
Sbjct: 509 YVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVPNE 568
Query: 568 KTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSN 627
+ Y V +TGA VT DSS+++++RYCE LP DK Y+PKP F++ ++ Y C L LP +
Sbjct: 569 EINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLALPPS 628
Query: 628 APFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLP 687
A Q +VGP +RN + +KQLVCL+AC+KLH++GAL+DHL SVE+P I KN+
Sbjct: 629 AVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPE--IVSKNKG-T 685
Query: 688 GAGTTKRKELHGTTPIRALSGRW-GEKCGVILHAYKFNFACSIVTEIYSGFVLLIESELD 746
G GTTKRKELHGTT I A SG W +K + L +YK NF C +IYS FVLLI++ L
Sbjct: 686 GIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLIDATLP 745
Query: 747 NDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSK-SS 805
++V E++LYL K VK +VSS G + LDA QM +AK FQ L FNGLFGKLF +SK +
Sbjct: 746 DEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLFTRSKVPN 805
Query: 806 GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIK----- 860
REF L +E +W+ + +YLLLP N D + INWS I+ A+ V+ ++
Sbjct: 806 APREFILNKEDTFVWNTASVYLLLP---TNPSFDSNVCINWSVIDAAATAVKLMRRIYSE 862
Query: 861 -EKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR 919
++ LG + N G D+IHLAN S A +LKDMVVLA+HTG+
Sbjct: 863 NKRELLGIFDSDQNVG-----------------DLIHLANKSCKANSLKDMVVLAVHTGK 905
Query: 920 IYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976
IY+ ++I S +S FDG +D +TF YF +KYGIVL HP QPLL LK SHNPH
Sbjct: 906 IYTALDI-TELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPH 964
Query: 977 NLLVN-FNDGGGSGKGSKSGMN-TKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQR 1034
NLL + F D G + +G K VHMPPELL+ +D+P+ +++S YL P++M R
Sbjct: 965 NLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYR 1024
Query: 1035 LESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSC 1094
+ESL LASQLR EI N I S LILEA+TTL C E FSMERLELLGDSVLKYAVSC
Sbjct: 1025 IESLTLASQLRSEIGYSDSN--ISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSC 1082
Query: 1095 HLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRP 1154
HLFL +P K EGQLS+ R +CN+TL+KLG +R +QGY+RD+AFDPRRW+APGQLS+RP
Sbjct: 1083 HLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRP 1142
Query: 1155 VPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214
PCEC V + EV D D +V+GK CD GHRWM SKTIADC EA+IGAYY GGGL
Sbjct: 1143 SPCECPVKS-EVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGL 1201
Query: 1215 IAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEA 1274
AA+ ++KWLGI A++E L+ I AS+++Y+P+ N + +E+K+GY F+VK LL EA
Sbjct: 1202 RAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEA 1261
Query: 1275 ITHASVQEF---YCYQ-------------------------------------------- 1287
+TH S QE YCY+
Sbjct: 1262 LTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFA 1321
Query: 1288 ------NLYKHLQHCSTLLLSQITEYVK-----SFPKPGETTDSGPSMKAPKALGDLLES 1336
N + LQH S LLL QITEYV S K +D P K PK LGD++ES
Sbjct: 1322 QVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLP--KGPKVLGDIVES 1379
Query: 1337 IVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKG 1396
I GA+L+DTKL+LD VW IF+P+LSPIVTP+ LELPP RELIE C GYFV NC +G
Sbjct: 1380 IAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQG 1439
Query: 1397 EMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDD 1456
+ V A L +QLK+VLLV +G + RK AK A+S LLK LE I K AS T +
Sbjct: 1440 DTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKH 1499
Query: 1457 CRQTT--------KEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKG 1508
C T D P K + A DS + +G P+ + KG
Sbjct: 1500 CGSTNPFNNLHVDAMDTQTPKPTKEKN-------AADS-RNISDPLLGKPLHVIVKTSKG 1551
Query: 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCE----GLEKRTGFS-SFVSKITLHIP 1563
GPR +L++LCK + WPMPT E +E + C +K T + +F S ITLHIP
Sbjct: 1552 GPRIALYELCKKLQWPMPTME-SEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIP 1610
Query: 1564 EFGNVECNGDPRADKKSSFDSAALIMLHELERQGKI 1599
+ GD RADKKSS DSAAL +L+EL+R+G +
Sbjct: 1611 NADVISLTGDGRADKKSSQDSAALFLLYELQRRGTL 1646
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185717|ref|NP_001154662.2| protein dicer-like 3 [Arabidopsis thaliana] gi|322518661|sp|Q9LXW7.2|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName: Full=Dicer-like protein 3; Short=AtDCL3 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1501 bits (3885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1659 (49%), Positives = 1065/1659 (64%), Gaps = 160/1659 (9%)
Query: 6 NSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAV 65
NSLKR F E+ D SS +G Y+LKV+EVAK RN IAV
Sbjct: 17 NSLKRKFSEIDGDQNLDSVSSPMMTDSNGS-------------YELKVYEVAKNRNIIAV 63
Query: 66 LETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125
L TG K+ I LIK + S+ K+LIIFLAPTV+LV QQ IR + +VEEY+
Sbjct: 64 LGTGIDKSEITKRLIKAMGS---SDTDKRLIIFLAPTVNLVKQQCCEIRALVNLKVEEYF 120
Query: 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP 185
GAKGVD+W SQ W +E +K+DVLVMTPQILLD LR AFL L++VC ++IDECHH TGNHP
Sbjct: 121 GAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGNHP 180
Query: 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKG-VSSAMDCEGQISELESTLDSQVFTIEDKT 244
Y K+MKEFYH+S +KPK+FG+TAS V+RKG VSS + Q+SELE +DS++F E++
Sbjct: 181 YAKLMKEFYHESTSKPKIFGLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEERE 240
Query: 245 EMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304
+E F + KE Y+ S C +LK KLE S KFDASL +LQ + + +MD+K +
Sbjct: 241 GVEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRLQELGKDSFLNMDNKFE 300
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364
T +K+LS + +IL+CLD LGLICA+ A ++CLEK+ +EE E Y++ S+ CK FLE++
Sbjct: 301 TYQKRLSIDYREILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKECSMVCKEFLEDI 360
Query: 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI 424
L IG LP DK +D ++ AV G++S KL EL L SF Q C+I VERI
Sbjct: 361 LSTIGVYLPQDDKSLVDLQQNHLSAVISGHVSPKLKELFHLLDSFRGDKQKQCLILVERI 420
Query: 425 IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVI 484
I AKV+ERFVKK L +L V YLT + S + K+Q E+ + F+ GKVNLLF TDV+
Sbjct: 421 ITAKVIERFVKKEASLAYLNVLYLTENNPSTNVSAQKMQIEIPDLFQHGKVNLLFITDVV 480
Query: 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSE 544
EEG VP+CS ++ FDLPKT+ SY QS+ A+Q NS+ I+ LERGN KQR+ L D++R E
Sbjct: 481 EEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRRE 540
Query: 545 RSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYT 604
L +DPEA LK+C + V+ G+ V DS++ +
Sbjct: 541 ------VLIQDPEAPNLKSCPPPVKNGHGVKEIGSMVIPDSNITV--------------- 579
Query: 605 PKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND 664
+EEA A QT+ P SRN+ L C+KL L++
Sbjct: 580 ---------SEEA----------ASTQTMSDPPSRNEQLP-------PCKKLR----LDN 609
Query: 665 HLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKC-GVILHAYKF 723
+LL S E SK S AG+ KRKELHGTT ALSG WGE G AYKF
Sbjct: 610 NLLQS--NGKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGATFQAYKF 667
Query: 724 NFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSKA 783
+F C+I E+YS F LL+ES L DVG E++LYLV K VKA+VS GQ+ L +++ KA
Sbjct: 668 DFCCNISGEVYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQEELVKA 727
Query: 784 KCFQELFFNGLFGKLFVKSKSSGS-REFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSW 842
K FQ+ FFNG+FGKLFV SKS G+ REF L+ +T+SLW P++M+LLLP+E N S
Sbjct: 728 KYFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPAFMFLLLPVE-TNDLA-SSA 785
Query: 843 RINWSGINPCASVVEFIKEKSFLGAAQCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSV 902
I+WS IN CAS+VEF+K+ S L + N N+S + ++IH AN S
Sbjct: 786 TIDWSAINSCASIVEFLKKNSLLDLRDSDGNQCNTSSGQEVLLDDKMEETNLIHFANASS 845
Query: 903 DAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHP 962
D +L+++VV+AIHTGRIYSIVE V++SSA SPF+ + T+ YF++KYGIVL HP
Sbjct: 846 DKNSLEELVVIAIHTGRIYSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKKYGIVLAHP 905
Query: 963 GQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSG-MNTKKPQMHVHMPPELLVRVDVPISV 1021
QPL++LKQSH+ HNLLV+FN+ K+G + +KP +H H+PPELL R+DVP +V
Sbjct: 906 NQPLMKLKQSHHAHNLLVDFNEEMVVKTEPKAGNVRKRKPNIHAHLPPELLARIDVPRAV 965
Query: 1022 VKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLE 1081
+KS+YLLPSVM RLESLMLASQLREEI+C NF I S+ ILEA+TTL C ESFSMERLE
Sbjct: 966 LKSIYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPESFSMERLE 1025
Query: 1082 LLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDP 1141
LLGDSVLKY SCHLFL YP K EGQLS +R + NS LH+L T RKLQGYIR+ AF+P
Sbjct: 1026 LLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIRNGAFEP 1085
Query: 1142 RRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201
RRW APGQ SL PVPC+CG+DT EVPLD KFFT++ + +GK CDMGHRW+ SK+++DCA
Sbjct: 1086 RRWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWVVSKSVSDCA 1145
Query: 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKI 1261
EALIGAYYV GGL A+L+MMKWLGID D + +LV + I R SLR Y+P+ +E+ ++E KI
Sbjct: 1146 EALIGAYYVSGGLSASLHMMKWLGIDVDFDPNLVVEAINRVSLRCYIPKEDELIELERKI 1205
Query: 1262 GYEFTVKFLLQEAITHASVQEFYCYQ---------------------------------- 1287
+EF+ KFLL+EAITH+S++E Y Y+
Sbjct: 1206 QHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLR 1265
Query: 1288 ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALG 1331
NL+ HLQ C+T+L +QI +Y+ SF KP ET S PS++ PKALG
Sbjct: 1266 SACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSIQGPKALG 1325
Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKEN 1391
D++ESI GA+LIDT+L+LD+VWR+F+P+LSP+VTPDKL+LPP REL ELCDSLGYF +
Sbjct: 1326 DVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVK 1385
Query: 1392 CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTG 1451
C+ G A ++LQL DVLL G+G E++ K A GKAAS LL +LE ++ IS+ S
Sbjct: 1386 CSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLE--KRNISRKTS--- 1440
Query: 1452 KLGDD---------CRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAP 1502
LGD+ C + +E L + + ++ P + P
Sbjct: 1441 -LGDNQSSMDVNLACNHSDRETL--------------------TSETTEIQSIVIPFIGP 1479
Query: 1503 INMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHI 1562
INMKKGGPR +L + CK LWPMPTF+T+E KSRT F +G EKRT FSSF S ITL I
Sbjct: 1480 INMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRTPFEFIDGGEKRTSFSSFTSTITLRI 1539
Query: 1563 PEFGNVECNGDPRADKKSSFDSAALIMLHELERQGKIII 1601
P V G+ R DKKSSFDSA + +L+ELER+ +II
Sbjct: 1540 PNREAVMYAGEARPDKKSSFDSAVVELLYELERRKIVII 1578
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1604 | ||||||
| TAIR|locus:2149259 | 1702 | DCL4 "dicer-like 4" [Arabidops | 0.488 | 0.460 | 0.313 | 2.8e-156 | |
| UNIPROTKB|Q8LMR2 | 1883 | DCL1 "Endoribonuclease Dicer h | 0.276 | 0.235 | 0.324 | 7.3e-155 | |
| UNIPROTKB|A7LFZ6 | 1657 | DCL4 "Endoribonuclease Dicer h | 0.382 | 0.370 | 0.302 | 3.5e-154 | |
| TAIR|locus:2097705 | 1388 | DCL2 "dicer-like 2" [Arabidops | 0.376 | 0.435 | 0.366 | 3.2e-142 | |
| ZFIN|ZDB-GENE-030131-3445 | 1865 | dicer1 "Dicer1, Dcr-1 homolog | 0.175 | 0.150 | 0.336 | 7.4e-97 | |
| UNIPROTKB|F1NJX0 | 1921 | DICER1 "Endoribonuclease Dicer | 0.178 | 0.148 | 0.321 | 3.3e-96 | |
| UNIPROTKB|Q25BN1 | 1921 | DICER1 "Endoribonuclease Dicer | 0.178 | 0.148 | 0.321 | 3.3e-96 | |
| MGI|MGI:2177178 | 1916 | Dicer1 "dicer 1, ribonuclease | 0.177 | 0.148 | 0.317 | 1.8e-95 | |
| UNIPROTKB|Q9UPY3 | 1922 | DICER1 "Endoribonuclease Dicer | 0.177 | 0.148 | 0.317 | 6.4e-95 | |
| UNIPROTKB|A0MQH0 | 1917 | DICER1 "Endoribonuclease Dicer | 0.175 | 0.147 | 0.323 | 8e-95 |
| TAIR|locus:2149259 DCL4 "dicer-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 977 (349.0 bits), Expect = 2.8e-156, Sum P(4) = 2.8e-156
Identities = 259/826 (31%), Positives = 423/826 (51%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
I R YQ+++ + A N I L TG GKT IAVMLI ++ + S K + IFLAPTV
Sbjct: 123 IARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK-KSVCIFLAPTVA 181
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
LV QQ VI +F+V + G K + + S+ W++EI N+VLVMTPQILL L+ F+
Sbjct: 182 LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSE-WEREIAANEVLVMTPQILLHNLQHCFI 240
Query: 165 SLDIVCFIVIDECHHAT--GNHPYTKIMKEFYHKSDN--KPKVFGMTASPVVRKGVSSAM 220
++ + ++ DECHHA NHPY +IMK FY KS++ +P++FGMTASPVV KG +
Sbjct: 241 KMECISLLIFDECHHAQQQSNHPYAEIMKVFY-KSESLQRPRIFGMTASPVVGKGSFQSE 299
Query: 221 DCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280
+ I+ LE+ L+++V+++E +++ FV S +Y + SD S +
Sbjct: 300 NLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSAL---SDASQ----STIR 352
Query: 281 FDASLSKLQGSQLNCYKDMDDKHKT-----LRKQLSDYHAKILYCLDELGLICAYEAVKI 335
++ L ++ L K + D H+T +++ L H ++Y L LGL A +A KI
Sbjct: 353 YENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKI 412
Query: 336 CLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
L Q+E S C +L + S + D+ D + A+
Sbjct: 413 QLNSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVA-KDENASDL-LSLA-ALKEPLF 469
Query: 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
S KL +L+++ F + CIIFV RI+ A+ + + + L +L G ++ +
Sbjct: 470 SRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGL 529
Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+++ + + +L+ F+ ++NLL AT V EEG+ + C VIR+DLP+TV+S+IQSRGRA
Sbjct: 530 KSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRA 589
Query: 516 RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYIVE 575
R S++ +++ GN K+ + + + +E + R E + C + + Y V
Sbjct: 590 RMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSE----ETCPRLDEELYKVH 645
Query: 576 STGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPFQTI 633
TGA ++ SS++L+++YC LP D+++ PKP F++K +E C +TLP+NAP I
Sbjct: 646 ETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEI 705
Query: 634 VGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNE--SLPGAGT 691
+ +K+ CL+A +LH +G LND LLP ++ E+ L + + ++ G G
Sbjct: 706 ESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGC 765
Query: 692 TKRKELHGTTPIRALSGRWGEKCGVI-LHAYKFNFACSIVTEIYSGFVLLIESELDNDVG 750
++ P+ +W + LH+Y F IY F ++S L +
Sbjct: 766 SRGDLYEMRVPV-LFKQKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAE 824
Query: 751 NFELELYLXXXXXXXXXXX-XGQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSSGSRE 809
+++L+L G D D++ A+ FQE+ LF + +
Sbjct: 825 TMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLF------ERGELIPD 878
Query: 810 FF-LKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 854
F L+ + +S S S YLLLPL + + G+ ++W I C S
Sbjct: 879 FVPLELQDSSRTSKSTFYLLLPLCLHD--GESVISVDWVTIRNCLS 922
|
|
| UNIPROTKB|Q8LMR2 DCL1 "Endoribonuclease Dicer homolog 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 7.3e-155, Sum P(6) = 7.3e-155
Identities = 158/487 (32%), Positives = 243/487 (49%)
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
AV G ++ ++ L+++ L + + IIFVER++ A V+ + + ++P L+ + A L
Sbjct: 616 AVADGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASL 675
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
G + + ++Q + + FR G+V LL AT V EEG+ + C+ VIRFDL KTV +Y
Sbjct: 676 IGHNNNQEMRACQMQ-DTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY 734
Query: 509 IQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACF--LKACTY 566
IQSRGRAR+ S +ILMLERGN+ L + SE ++ A+ R + +
Sbjct: 735 IQSRGRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSP 794
Query: 567 VKTKS---YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIF---KYKS--AEEAY 618
V T Y VESTGA V+ +S+V LIH YC LPSD+Y P F KY+ Y
Sbjct: 795 VDTSPGSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEY 854
Query: 619 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNL 678
C+L LP NAPF+ + GP + L++Q VCL AC+KLH++GA D LLP E
Sbjct: 855 SCKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPD-RGSGEGEK 913
Query: 679 ISKKNESLPGAGTTKRKELH--GTTPI-RA---LSGRWGEKCGVILHAYKFNFAC----- 727
+ +E P GT + +E + G I R LSGR G + + Y ++ C
Sbjct: 914 TEQNDEGEPLPGTARHREFYPEGVADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGT 973
Query: 728 ---SIVTEIYSGFVLLIESELDNDVGNFELELYLXXXXXXXXXXXX-GQVHLDADQMSKA 783
VT++ S F ++ +ELD +V + ++L++ G++ + Q+
Sbjct: 974 SKDPFVTQL-SNFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLL 1032
Query: 784 KCFQELFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWR 843
K F + + L V S + W P+ YL +P+ D
Sbjct: 1033 KSFHVRLMSIV---LDVDVDPS-----------TTPWDPAKAYLFVPVG-AEKCTDPLRE 1077
Query: 844 INWSGIN 850
I+W+ +N
Sbjct: 1078 IDWTLVN 1084
|
|
| UNIPROTKB|A7LFZ6 DCL4 "Endoribonuclease Dicer homolog 4" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 3.5e-154, Sum P(5) = 3.5e-154
Identities = 196/649 (30%), Positives = 300/649 (46%)
Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273
KG S+ ++ I+ LE L ++V ++ D E+E V S FY S+L
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFYGPVNH--SNLT-- 280
Query: 274 LEVSWSKFDASLSKLQGSQL--NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYE 331
+ + D SL KLQ ++ D D K L K L H I++CL ELG A +
Sbjct: 281 -TICIKELD-SL-KLQSERMLRASLCDFKDSQKKL-KSLWRLHENIIFCLQELGSFGALQ 336
Query: 332 AVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSKAV 390
A + L + E+ S F L+ S L G FD K +
Sbjct: 337 AARTFLSFDGDKLDRREVDLNGSTSS--FAHHYLNGATSILSRNKTDGSHAGSFDLEK-L 393
Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG 450
+ + S K L+ + +G + CI+FV+RI A+ + ++ + L +L G
Sbjct: 394 EEPFFSNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVG 453
Query: 451 STTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510
+ ++ +++ F G+VNLL AT V EEG+ + C V+RFDLP+TV+S+IQ
Sbjct: 454 CHSGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQ 513
Query: 511 SRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTK 570
SRGRAR S+++++LER N L I E + + SR F C ++
Sbjct: 514 SRGRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTSNDMF--DC--LEEN 569
Query: 571 SYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPF 630
Y V++TGAS++T SV+L+H YC+ LP D ++TP P+F Y E C L LP NA F
Sbjct: 570 IYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAAF 629
Query: 631 QTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGA- 689
+ G +K+ +K+ CL+AC KLH++GAL D LLP S N +S N S
Sbjct: 630 RQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPG--PGSRKNKVSVTNNSSNNKV 687
Query: 690 -GTTKRKELHGTTPIRALSGRWGEKCGVI--LHAYKFNFACSIVTEIYSGFVLLIESELD 746
+ R+ELH I A+ G K + LH Y F Y F L + + L
Sbjct: 688 EDDSLREELHEML-IPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLP 746
Query: 747 NDVGNFELELYLXXXXXXXXXXXX-GQVHLDADQMSKAKCFQELFFNGLFGKLFVKSKSS 805
+ +++L+L G++ + ++M A FQE+ K+ +
Sbjct: 747 VEAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCL-----KILLDRSEF 801
Query: 806 GSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCAS 854
S L + +L S YLLLP++ +GD + I+W + C S
Sbjct: 802 TSPHVKLGNDV-TLEINSTFYLLLPIK-QKCYGD-RFMIDWPAVERCLS 847
|
|
| TAIR|locus:2097705 DCL2 "dicer-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 998 (356.4 bits), Expect = 3.2e-142, Sum P(3) = 3.2e-142
Identities = 239/652 (36%), Positives = 377/652 (57%)
Query: 38 STNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLII 97
S + ++F R YQ++ E A ++NTI LETG+GKT+IA+ML++ A + +
Sbjct: 17 SASPLHFA-RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPS-PCFCV 74
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
FL P V LV QQ + +++HTD +V Y+G GVD WDS W++E++K +VLVMTP ILLD
Sbjct: 75 FLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLD 134
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVV 212
ALR +FLSL ++ +++DECHHA G HPY IM+EFYHK + N P++FGMTAS V
Sbjct: 135 ALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVK 194
Query: 213 RKGVSSAMDCEGQ-ISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG---S 268
KG + +D + I ELE+ ++S+V+T E+++ + FVP + S ++Y K +
Sbjct: 195 TKGEN--LDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRA 252
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L KLE K SL L LN +D ++ K+L + + YCLD+LG++
Sbjct: 253 SLVEKLERLTIKHRLSLGTLD---LNS-STVD----SVEKRLLRISSTLTYCLDDLGILL 304
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSK 388
A +A + + +Q + ++ + ++ +++ LA+ + G ++S
Sbjct: 305 AQKAA----QSLSASQNDSFLWGELNMFSVALVKKFCSDASQEF-LAE---IPQGLNWSV 356
Query: 389 A-----VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV-PFLTH 442
A + G ++ K L++ L + + CIIFV+R+I A V+E + ++ P +
Sbjct: 357 ANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNN 416
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
Y+ G+ + + T K Q E++E FR G VN++ AT ++EEG+ V +C+ VIRFD
Sbjct: 417 WKTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPA 476
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLK 562
+ S+IQSRGRAR NS +++M+E G+L +++L + + + + +L L
Sbjct: 477 SNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS-----LV 531
Query: 563 ACTYVKTKS----YIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAY 618
C + S + VESTGA+VT SSV+LI+ YC LPSD+Y+ P P F + +
Sbjct: 532 PCPPLPDDSDEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGS- 590
Query: 619 ECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSV 670
C L LP + P + + + NK L KQ VCL+AC +LH+VGAL+DHL+P +
Sbjct: 591 -CTLYLPKSCPVKEVKAEAN-NKVL-KQAVCLKACIQLHKVGALSDHLVPDM 639
|
|
| ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 7.4e-97, Sum P(7) = 7.4e-97
Identities = 105/312 (33%), Positives = 165/312 (52%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + + K
Sbjct: 425 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEF 484
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 485 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVS 544
Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEAC--F-LKACTYVKT--KSYIVE 575
+I++ + K + ++ + S+ E C F L+ T Y++
Sbjct: 545 NYIMLADSERTKTFQEDLKTYKAIEKILRNKCSKSAE-CNDFELEPVTDDDNVLPPYVLR 603
Query: 576 ST--GASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE---AYECELTLPSNAPF 630
S G VT ++++ ++RYC LPSD + P K K+ E Y L LP N+P
Sbjct: 604 SEDGGPRVTMNTAIGHVNRYCARLPSDPFTHLAP--KCKTVEMNTGGYRSTLFLPINSPL 661
Query: 631 QT-IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNES 685
+ + GP L+++ V L CEKLH++G L+DHL+P +V+ E +L ++ S
Sbjct: 662 RVPVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETS 721
Query: 686 LPGA-GTTKRKE 696
+PG G+TKR++
Sbjct: 722 VPGRPGSTKRRQ 733
|
|
| UNIPROTKB|F1NJX0 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 3.3e-96, Sum P(7) = 3.3e-96
Identities = 100/311 (32%), Positives = 165/311 (53%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + K
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIVES 576
+I++ + +K + ++ + S+ + + V Y++ +
Sbjct: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRT 618
Query: 577 TGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA-EEAYECELTLPSNAPFQ-T 632
S VT ++++ I+RYC LPSD + P K + + + L LP N+P + +
Sbjct: 619 DENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRAS 678
Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
IVGP L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG
Sbjct: 679 IVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 738
Query: 689 A-GTTKRKELH 698
G+TKR++ +
Sbjct: 739 RPGSTKRRQCY 749
|
|
| UNIPROTKB|Q25BN1 DICER1 "Endoribonuclease Dicer" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 3.3e-96, Sum P(7) = 3.3e-96
Identities = 100/311 (32%), Positives = 165/311 (53%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGSTTSVDALTPKV----- 462
T +LC IIFVER A V+ R +K+ P L +++ ++TG + K
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEF 498
Query: 463 --QKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR S
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 521 QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIVES 576
+I++ + +K + ++ + S+ + + V Y++ +
Sbjct: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRT 618
Query: 577 TGAS--VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSA-EEAYECELTLPSNAPFQ-T 632
S VT ++++ I+RYC LPSD + P K + + + L LP N+P + +
Sbjct: 619 DENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRAS 678
Query: 633 IVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLPG 688
IVGP L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+PG
Sbjct: 679 IVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPG 738
Query: 689 A-GTTKRKELH 698
G+TKR++ +
Sbjct: 739 RPGSTKRRQCY 749
|
|
| MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 1.8e-95, Sum P(8) = 1.8e-95
Identities = 99/312 (31%), Positives = 169/312 (54%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG + ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT V+EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV- 574
S ++++ + +K + ++ + S+ + V + Y++
Sbjct: 558 SNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLR 617
Query: 575 -ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ- 631
+ G VT ++++ I+RYC LPSD + P + + + + L LP N+P +
Sbjct: 618 PDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRA 677
Query: 632 TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLP 687
+IVGP + L++++V L CEKLH++G L++HL+P +V+ E +L ++ S+P
Sbjct: 678 SIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVP 737
Query: 688 GA-GTTKRKELH 698
G G+TKR++ +
Sbjct: 738 GRPGSTKRRQCY 749
|
|
| UNIPROTKB|Q9UPY3 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.4e-95, Sum P(7) = 6.4e-95
Identities = 99/312 (31%), Positives = 166/312 (53%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT ++EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKS----YIV- 574
S +I++ + +K + ++ + S+ + + Y++
Sbjct: 558 SNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLR 617
Query: 575 -ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAPFQ- 631
+ G VT ++++ I+RYC LPSD + P + + + + L LP N+P +
Sbjct: 618 PDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRA 677
Query: 632 TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNESLP 687
+IVGP L++++V L CEKLH++G L+DHL+P +V+ E +L ++ S+P
Sbjct: 678 SIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVP 737
Query: 688 GA-GTTKRKELH 698
G G+TKR++ +
Sbjct: 738 GRPGSTKRRQCY 749
|
|
| UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.0e-95, Sum P(7) = 8.0e-95
Identities = 102/315 (32%), Positives = 172/315 (54%)
Query: 413 TQVLC-IIFVERIIAAKVVERFVKKV----PFLTHLTVAYLTGS--------TTSVDALT 459
T +LC IIFVER A V+ R +K+ P L +++ ++TG + ++A
Sbjct: 439 TNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEF 498
Query: 460 PKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519
K Q+EVL FR + NLL AT V+EEG+ +P C+ V+RFDLP SY+QS+GRAR
Sbjct: 499 RK-QEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPI 557
Query: 520 SQFILMLERG-------NLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSY 572
S ++++ + +LK + I+R++ S + D +A + Y
Sbjct: 558 SNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEADVDAVVDDDDVF---PPY 614
Query: 573 IV--ESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEA-YECELTLPSNAP 629
++ + G VT ++++ ++RYC LPSD + P + + + + L LP N+P
Sbjct: 615 VLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGTFYSTLYLPINSP 674
Query: 630 FQ-TIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDHLLP----SVEEPSENNLISKKNE 684
+ +IVGP L++++V L CEKLH++G L++HL+P +V+ E +L ++
Sbjct: 675 LRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEET 734
Query: 685 SLPGA-GTTKRKELH 698
S+PG G+TKR++ +
Sbjct: 735 SVPGRPGSTKRRQCY 749
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LXW7 | DCL3_ARATH | 3, ., 1, ., 2, 6, ., - | 0.4966 | 0.9345 | 0.9487 | yes | no |
| Q5N870 | DCL3A_ORYSJ | 3, ., 1, ., 2, 6, ., - | 0.4969 | 0.9470 | 0.9200 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.26 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1604 | |||
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 4e-44 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 2e-37 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 1e-31 | |
| pfam03368 | 91 | pfam03368, dsRNA_bind, Double stranded RNA binding | 6e-30 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-25 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 3e-23 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-23 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 3e-20 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-18 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-18 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 5e-17 | |
| pfam00636 | 91 | pfam00636, Ribonuclease_3, Ribonuclease III domain | 2e-16 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 1e-15 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-14 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 4e-14 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 2e-13 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 2e-13 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-13 | |
| COG0571 | 235 | COG0571, Rnc, dsRNA-specific ribonuclease [Transcr | 7e-13 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 1e-12 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 2e-10 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 3e-10 | |
| pfam04851 | 100 | pfam04851, ResIII, Type III restriction enzyme, re | 2e-08 | |
| PHA02558 | 501 | PHA02558, uvsW, UvsW helicase; Provisional | 3e-08 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 4e-08 | |
| PRK00102 | 229 | PRK00102, rnc, ribonuclease III; Reviewed | 1e-07 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 5e-07 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-06 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-06 | |
| TIGR02191 | 220 | TIGR02191, RNaseIII, ribonuclease III, bacterial | 2e-06 | |
| PRK12371 | 235 | PRK12371, PRK12371, ribonuclease III; Reviewed | 5e-06 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 5e-06 | |
| cd00593 | 133 | cd00593, RIBOc, RIBOc | 7e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 2e-05 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 4e-05 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 5e-05 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 6e-05 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 7e-05 | |
| COG4096 | 875 | COG4096, HsdR, Type I site-specific restriction-mo | 2e-04 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 3e-04 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 3e-04 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication | 3e-04 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 4e-04 | |
| COG4098 | 441 | COG4098, comFA, Superfamily II DNA/RNA helicase re | 4e-04 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 6e-04 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 7e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 0.001 | |
| cd02843 | 122 | cd02843, PAZ_dicer_like, PAZ domain, dicer_like su | 0.001 | |
| smart00535 | 129 | smart00535, RIBOc, Ribonuclease III family | 0.002 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 0.002 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 0.002 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 0.004 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 0.004 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 0.004 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 4e-44
Identities = 137/554 (24%), Positives = 228/554 (41%), Gaps = 117/554 (21%)
Query: 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
PR+YQL + A +NT+ VL TG GKT IA M+I A + F ++FLAPT L
Sbjct: 16 PRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVI-----ANRLRWFGGKVLFLAPTKPL 70
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
V Q + R T +E G E + ++ K V V TPQ++ + L+ +
Sbjct: 71 VLQHAEFCRKVTGIPEDEIAALTG--EVRPEEREELWAKKKVFVATPQVVENDLKAGRID 128
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP-VVRKGVSSAMDCEG 224
LD V ++ DE H A GN+ Y + KE Y +S P + G+TASP + + ++ G
Sbjct: 129 LDDVSLLIFDEAHRAVGNYAYVFVAKE-YLRSAKNPLILGLTASPGSDLEKIQEVVENLG 187
Query: 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284
I + +E +TE + V R Y + +V W K
Sbjct: 188 -IEK-----------VEVRTEEDPDV-------RPYVKKI----------KVEWIKV--- 215
Query: 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV-KICLEKVLKA 343
D+ ++ K +R L D L L ELG+I + V K L ++ +
Sbjct: 216 -------------DLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQI 262
Query: 344 QEEC------EIYR-----QSSLQCKYFLE-------EVLHVI---------GSALPLAD 376
+ + +R +++ + LE + A
Sbjct: 263 RLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322
Query: 377 KIFLDFGFDYSKAVDL-------GYISTKLHELLQL---FLSFGKSTQVLCIIFVE-RII 425
+ D + +A+ L G KL +L ++ L ++V I+F E R
Sbjct: 323 SLLAD--PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRV--IVFTEYRDT 378
Query: 426 AAKVVERFVK-----KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFA 480
A ++V K +V F+ + G ++ K QKE+++ FR G+ N+L A
Sbjct: 379 AEEIVNFLKKIGIKARVRFIGQASREGDKG-------MSQKEQKEIIDQFRKGEYNVLVA 431
Query: 481 TDVIEEGMHVPNCSYVIRFDLPKTVSS---YIQSRGR-ARQHNSQFILMLERGNLKQRNK 536
T V EEG+ +P VI ++ V S IQ +GR R+ + ++++ G +
Sbjct: 432 TSVGEEGLDIPEVDLVIFYE---PVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEA-Y 487
Query: 537 LFDIIRSERSVTDT 550
+ R E+ + ++
Sbjct: 488 YYSSRRKEQKMIES 501
|
Length = 542 |
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-37
Identities = 55/129 (42%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 892 KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYF 951
D++HLA+GS A +LK VV A H GR Y I I++ +A S F G T+ YF
Sbjct: 16 SDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGILD-LNANSSFPGKEGLGYATYAEYF 74
Query: 952 SEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKK--PQMHVHMPP 1009
EKYGIVL HP QPLL+ KQ N HNLL N + + G + +K + V +PP
Sbjct: 75 KEKYGIVLNHPNQPLLKGKQIFNLHNLLHNRFE--------EKGESEEKEKDRYFVELPP 126
Query: 1010 ELLVRVDVP 1018
EL +D+P
Sbjct: 127 ELCSVIDLP 135
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 135 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-31
Identities = 51/168 (30%), Positives = 68/168 (40%), Gaps = 48/168 (28%)
Query: 1060 SLILEALTTLGCCE---SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116
SL+LEALT F+ ERLE LGD+VL+ V+ +LF +P EG L+ RS V
Sbjct: 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60
Query: 1117 CNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQD 1176
N TL +L + L Y+R
Sbjct: 61 SNETLARLARELGLGKYLR----------------------------------------- 79
Query: 1177 TKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1224
+GK + + K +AD EALIGA Y+ GG AA + L
Sbjct: 80 ----LGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRL 123
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|190615 pfam03368, dsRNA_bind, Double stranded RNA binding domain | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 6e-30
Identities = 38/88 (43%), Positives = 57/88 (64%)
Query: 586 SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSK 645
++ L++RYC LPSD + + +P F + + Y C + LP N+P + IVG R+K L+K
Sbjct: 1 AIQLLNRYCATLPSDPFTSLRPEFSVEPVDGGYVCTVILPLNSPVREIVGKPMRSKRLAK 60
Query: 646 QLVCLEACEKLHQVGALNDHLLPSVEEP 673
Q +AC+KLH++G LNDHLLP +E
Sbjct: 61 QSAAFKACKKLHELGELNDHLLPIGKER 88
|
This domain is a divergent double stranded RNA-binding domain. It is found in members of the Dicer protein family which function in RNA interference, an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules. Length = 91 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-25
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 43 NFI-PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
N I R+YQ + A ++NT+ VL TG GKT IA+++I A+ + G K ++ LAP
Sbjct: 12 NTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVI---AERLHKKGGK--VLILAP 66
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYG-------AKGVDEWDSQCWQKEINKNDVLVMTPQI 154
T LV Q + R + E+ K + W+ K V+V TPQ+
Sbjct: 67 TKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---------KAKVIVATPQV 117
Query: 155 LLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
+ + L +SL+ V ++ DE H A GN+ Y I + YH+ P V G+TASP
Sbjct: 118 IENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAER-YHEDAKNPLVLGLTASP 172
|
Length = 773 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-23
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 47/173 (27%)
Query: 1060 SLILEALTTLGCCESF-SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118
SL+L ALT ERLE LGD+VL+ V+ +L+ YP EG LS RS V N
Sbjct: 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSN 60
Query: 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTK 1178
TL +L L +IR + R P
Sbjct: 61 ETLARLAKKLGLGEFIRLGRGEAIS-------GGRDKP---------------------- 91
Query: 1179 VVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL-IAALYMMKWLGIDADL 1230
K +AD EALIGA Y+ GL A ++ LG D
Sbjct: 92 ----------------KILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 4e-23
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
R YQ + E R+ I TG+GKT+ A++ +A+K + ++ L P
Sbjct: 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPA---LEALKRGKGGR-VLVLVP 62
Query: 102 TVHLVHQQYDVIRVHTDFE----VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
T L Q + ++ V Y G ++ + E K D+LV TP LLD
Sbjct: 63 TRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLR----KLESGKTDILVTTPGRLLD 118
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
L LSL V +++DE H + + +++ ++ ++A+P
Sbjct: 119 LLENDKLSLSNVDLVILDEAHR-LLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-20
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119
R+ + TG+GKT+ A++ I + + S + ++ LAPT L +Q + ++
Sbjct: 1 RDVLLAAPTGSGKTLAALLPI---LELLDSLKGGQ-VLVLAPTRELANQVAERLKELFGE 56
Query: 120 --EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
+V G Q + K D++V TP LLD L + LSL + +++DE
Sbjct: 57 GIKVGYLIG----GTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEA 112
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
H N + + + K +V ++A+P
Sbjct: 113 HR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 49 YQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
Q + ++ + TG+GKT+ ++ I QA+ + LAPT L
Sbjct: 3 IQAQAIPAILSGKDVLVQAPTGSGKTLAFLL---PILQALLPKKGGPQALVLAPTRELAE 59
Query: 108 QQYDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
Q Y+ ++ V G + E + + + D+LV TP LLD LR+ L
Sbjct: 60 QIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKA---DILVGTPGRLLDLLRRGKL 116
Query: 165 SL-DIVCFIVIDECH 178
L + +V+DE H
Sbjct: 117 KLLKNLKLLVLDEAH 131
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 2e-18
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
+ VA L G + + ++E+LE FR GK +L ATDV G+ +P+ + VI +DL
Sbjct: 7 GIKVARLHGGLS------QEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL 60
Query: 502 PKTVSSYIQSRGRA 515
P +SYIQ GRA
Sbjct: 61 PWNPASYIQRIGRA 74
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 5e-17
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 442 HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
+ VA L G L+ + ++E+L+ F GK+ +L ATDV E G+ +P VI +DL
Sbjct: 11 GIKVARLHGG------LSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL 64
Query: 502 PKTVSSYIQSRGRA 515
P + +SYIQ GRA
Sbjct: 65 PWSPASYIQRIGRA 78
|
Length = 82 |
| >gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-16
Identities = 39/136 (28%), Positives = 51/136 (37%), Gaps = 45/136 (33%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
ERLE LGD+VL+ VS +L+ +P EG+L RS V N L KL L Y+R+
Sbjct: 1 ERLEFLGDAVLELYVSEYLYEKFPDLSEGELHRLRSALVSNEALAKLARKLGLDKYLREG 60
Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
D + + K +
Sbjct: 61 EGDIVK---------------------------------------------RASVKDKVL 75
Query: 1198 ADCAEALIGAYYVGGG 1213
AD EALIGA Y+ GG
Sbjct: 76 ADAFEALIGALYLDGG 91
|
Length = 91 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-15
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 401 ELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP 460
ELL+ L G +IF + ++K + VA L G +
Sbjct: 19 ELLKEHLKKGGKV----LIFCPSKKMLDELAELLRK----PGIKVAALHGD------GSQ 64
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+ ++EVL+ FR G++ +L ATDVI G+ +PN S VI +DLP + SSY+Q GRA
Sbjct: 65 EEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
|
Length = 131 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-14
Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 44/214 (20%)
Query: 43 NFIPRIYQ-------LKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL 95
F R YQ +K +R + VL TGAGKT++A + IA+ +S
Sbjct: 34 EFELRPYQEEALDALVKNRRTERRG--VIVLPTGAGKTVVA---AEAIAELKRS------ 82
Query: 96 IIFLAPTVHLVHQQYDVIRVHTDF--EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153
+ L PT L+ Q + ++ E+ Y G + KE+ V V T Q
Sbjct: 83 TLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGE-----------KELEPAKVTVATVQ 131
Query: 154 ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVR 213
L + I+ DE HH Y +I++ G+TA+P R
Sbjct: 132 TLARRQLLDEFLGNEFGLIIFDEVHHL-PAPSYRRILELLSAAY----PRLGLTATP-ER 185
Query: 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEME 247
+ G+I +L + V+ + K ++
Sbjct: 186 EDG-------GRIGDLFDLIGPIVYEVSLKELID 212
|
Length = 442 |
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 904 AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 963
AK+LK ++VL + + Y I +I N + +S F+ + D TFV Y+ +KY I + P
Sbjct: 24 AKDLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKS-DGSEITFVEYYKQKYNITIRDPN 82
Query: 964 QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVK 1023
QPLL S K N V +PPEL + + K
Sbjct: 83 QPLLV---SRP------------------KRRRNQNGKGEPVLLPPELCFITGLTDRMRK 121
Query: 1024 SLYLLPSVMQR 1034
L+ S+ R
Sbjct: 122 DFMLMKSIADR 132
|
This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 138 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 2e-13
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 1060 SLILEALTTLGCCESFSM--------ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSAR 1111
L+++ALT S++ ERLE LGD+VL+ VS +LF +P EG LS
Sbjct: 20 ELLIQALTH----RSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKL 75
Query: 1112 RSWAVCNSTLHKLGTDRKLQGYIR 1135
R+ V +L ++ + L Y+
Sbjct: 76 RAALVREESLAEIARELGLGEYLL 99
|
Length = 229 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 53/231 (22%)
Query: 1254 IKDIESKIGYEFTVKFLLQEAITHAS-VQEFYCYQN-------------------LYKHL 1293
++ +E K+GY F K LL++A+TH S E +N L+K
Sbjct: 8 LEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKY 67
Query: 1294 QHCS----TLL---------LSQITEYVKSFPK-----PGETTDSGPSMKAPKALGDLLE 1335
+ + L L++I + GE G L D E
Sbjct: 68 PNLPEGELSKLRAALVSEESLAEIAREL-GLGDYLRLGKGEEKSGGRRR--ESILADAFE 124
Query: 1336 SIVGAVLIDTKLNLDEVW--RIFKPILSPIVTPDKLELPPLRELIELCDSLG-----YF- 1387
+++GA+ +D+ L + ++F P L I D+ + P L EL + G Y
Sbjct: 125 ALIGAIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKDPK-TRLQELLQAQGLVLPEYRL 183
Query: 1388 VKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438
VKE + E+ + K +G G+ RS+K A+ AA Q LKKL V
Sbjct: 184 VKEEGPAHDKEFTVEVAVGGK---ELGTGKGRSKKEAEQAAAEQALKKLGV 231
|
Length = 235 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-13
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 401 ELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP 460
ELL L + I+FV + + ++K F VA L G L
Sbjct: 262 ELLLKLLKDEDEGR--VIVFVRTKRLVEELAESLRKRGFK----VAALHGD------LPQ 309
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520
+ + LE F+ G++ +L ATDV G+ +P+ S+VI +DLP Y+ GR +
Sbjct: 310 EERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR 369
Query: 521 Q---FILMLERGNLKQRNKLFDIIRSE 544
+ + E +K+ ++ + +
Sbjct: 370 KGVAISFVTEEEEVKKLKRIEKRLERK 396
|
Length = 513 |
| >gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 51/157 (32%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
ERLE LGD+VL V+ +LF YP EG+LS R+ V +L ++ + L Y+R
Sbjct: 45 ERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESLAEIARELGLGDYLRLG 104
Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
G + +
Sbjct: 105 KG--------------------------EEKSGGR---------RRE----------SIL 119
Query: 1198 ADCAEALIGAYYVGGGL------IAALYMMKWLGIDA 1228
AD EALIGA Y+ GL I L++ + IDA
Sbjct: 120 ADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDA 156
|
Length = 235 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
ERLE LGD+VL V+ +LF +P EG+LS R+ V +L ++ + L ++
Sbjct: 36 ERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLL 93
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 904 AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSK--TFVNYFSEKYGIVLIH 961
K LK ++V + R Y I I + + S F D + YF EKY I L +
Sbjct: 26 TKALKGLIVETTYNNRTYRIDGITWDPTPNSTFP---LKDGGEISVAEYFKEKYNITLKY 82
Query: 962 PGQPLLRLKQ 971
P PLL + +
Sbjct: 83 PNLPLLVVGR 92
|
This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway. Length = 114 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-10
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 50 QLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
Q V + N + TG+GKT+IA++ I + G K ++++ P L +
Sbjct: 37 QEAVEKGLLSDENVLISAPTGSGKTLIALLAI---LSTLLEGGGK--VVYIVPLKALAEE 91
Query: 109 QYDVIRVHTDFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167
+Y+ +F E G + G+ D + + + DV+V TP+ L RK ++
Sbjct: 92 KYE------EFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIE 145
Query: 168 IVCFIVIDECH 178
V +VIDE H
Sbjct: 146 EVDLVVIDEIH 156
|
Length = 766 |
| >gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 72/169 (42%)
Query: 43 NFIPRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
R YQ + E + +++ + V+ TG+GKT+ A LI +A+ K ++F+ P
Sbjct: 1 KLELRPYQEEAIERLLEKKRGLIVMATGSGKTLTAAALIARLAKGKKK------VLFVVP 54
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
L+ Q +I +DE
Sbjct: 55 RKDLLEQALVII----------------IDE----------------------------- 69
Query: 162 AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
HH++ Y KI+++F + G+TA+P
Sbjct: 70 ---------------AHHSSAKTKYRKILEKF-----KPAFLLGLTATP 98
|
Length = 100 |
| >gnl|CDD|222875 PHA02558, uvsW, UvsW helicase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 51/181 (28%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 46 PRIYQLK-VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
P YQ V+E K + L T AGK++I +L + + + K LII PT
Sbjct: 115 PHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEG---KVLII--VPTTS 169
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
LV Q D + F E + G K+ + ++V T Q + ++ F
Sbjct: 170 LVTQMIDDFVDYRLFPREAMHKIYSGTA--------KDTDA-PIVVSTWQSAVKQPKEWF 220
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
IV DECH TG T I+ K DN FG+T S R G ++ +
Sbjct: 221 DQFG--MVIV-DECHLFTGKS-LTSIIT----KLDNCKFKFGLTGSL--RDGKANILQYV 270
Query: 224 G 224
G
Sbjct: 271 G 271
|
Length = 501 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-08
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 29/134 (21%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVE----------RFVKKVPFLTHLTVA 446
KL E+++ L +++ I+F + R A K+V+ RFV +
Sbjct: 351 KLREIVKEQLGKNPDSRI--IVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ---------- 398
Query: 447 YLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD-LPKTV 505
S ++ K Q E+L+ FR G+ N+L +T V EEG+ +P+ VI ++ +P +
Sbjct: 399 ---ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEI 455
Query: 506 SSYIQSRGRA-RQH 518
S IQ +GR RQ
Sbjct: 456 RS-IQRKGRTGRQE 468
|
Length = 773 |
| >gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 60/250 (24%), Positives = 94/250 (37%), Gaps = 85/250 (34%)
Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHC--------STLLL 1301
++++++ K+GY F LL +A+TH S Y N K L+H + L L
Sbjct: 1 MKKDLEELQKKLGYTFKDPELLIQALTHRS------YANENKGLKHNERLEFLGDAVLEL 54
Query: 1302 SQITEYV-KSFPK-----------------------------------PGETTDSGPSMK 1325
++EY+ K FP GE G +
Sbjct: 55 V-VSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGG--RR 111
Query: 1326 APKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELI------- 1378
P L D E+++GA+ +D L+ + + P ++E L +L+
Sbjct: 112 RPSILADAFEALIGAIYLDQ--GLEAARKFILRLFEP-----RIEEIDLGDLVKDYKTRL 164
Query: 1379 -ELCDSLG-----YF-VKENCTLKGEM----VHAELRLQLKDVLLVGEGQERSRKAAKGK 1427
EL G Y VKE +G E+ + K +GEG S+K A+
Sbjct: 165 QELLQGRGLPLPEYELVKE----EGPAHDKEFTVEVTVNGK---ELGEGTGSSKKEAEQA 217
Query: 1428 AASQLLKKLE 1437
AA Q LKKL+
Sbjct: 218 AAKQALKKLK 227
|
Length = 229 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 462 VQK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
VQ E ++ G+VN+L ATDV G+ + + S+VI FD+P++ +Y+ GR R
Sbjct: 280 VQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338
|
Length = 434 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521
+ LE FR GK+ +L ATDV G+H+ S+VI F LP+ Y+ GR + +
Sbjct: 376 KTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS 432
|
Length = 475 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-06
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 60 RNTIAVLETGAGKTMIAV--MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-- 115
R+ I +TG+GKT + +L K + + K +G + LI LAPT L Q +V R
Sbjct: 37 RDVIGQAQTGSGKTAAFLIPILEK-LDPSPKKDGPQALI--LAPTRELALQIAEVARKLG 93
Query: 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIV 173
HT+ +V YG G +++ + ++V TP LLD L + L L V ++V
Sbjct: 94 KHTNLKVVVIYG--GTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148
Query: 174 IDEC 177
+DE
Sbjct: 149 LDEA 152
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 68/234 (29%)
Query: 1257 IESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTL---------LLSQITEY 1307
+E ++GY+F K LL++A+TH+S Y ++ +K +++ L L+ + EY
Sbjct: 1 LEKRLGYKFKNKELLEQALTHSS----YANEH-HKGVKNNERLEFLGDAVLGLV--VAEY 53
Query: 1308 V-KSFPK-----------------------------------PGETTDSGPSMKAPKALG 1331
+ K+FP GE G L
Sbjct: 54 LFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRR--ESILA 111
Query: 1332 DLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLR---ELIELCDSLG--- 1385
D E+++GA+ +D+ L+ + +L P + + E L E + G
Sbjct: 112 DAFEALIGAIYLDS--GLEAARKFILKLLIPRIDAIEKEETLKDYKTALQEWAQARGKPL 169
Query: 1386 --Y-FVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436
Y +KE + E+ + + GEG+ +S+K A+ AA L+KL
Sbjct: 170 PEYRLIKEEGPDHDKEFTVEVSVNGE---PYGEGKGKSKKEAEQNAAKAALEKL 220
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220 |
| >gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 39/140 (27%), Positives = 51/140 (36%), Gaps = 45/140 (32%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
ERLE LGD VL V+ LF +P EG+LS R + V T + + L IR +
Sbjct: 47 ERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIR-T 105
Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197
D ++ L++R
Sbjct: 106 GSDVKKLTGKRLLNVR-------------------------------------------- 121
Query: 1198 ADCAEALIGAYYVGGGLIAA 1217
AD EALI A Y+ GGL AA
Sbjct: 122 ADVVEALIAAIYLDGGLEAA 141
|
Length = 235 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 446 AYLTGSTTSVDALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501
+L V LT V QK+ +LE F G +++L ATDV G+H+P ++V +DL
Sbjct: 273 GHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL 332
Query: 502 PKTVSSYIQSRGR 514
P Y+ GR
Sbjct: 333 PDDCEDYVHRIGR 345
|
Length = 423 |
| >gnl|CDD|238333 cd00593, RIBOc, RIBOc | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 40/134 (29%)
Query: 1270 LLQEAITHASVQEF---YCYQNL----------------YKHLQHCS----TLLLSQI-- 1304
LL EA+TH S + + L +K S T L S +
Sbjct: 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVS 61
Query: 1305 ----TEYVKS-------FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
+ GE G PK L D+ E+++GA+ +D +
Sbjct: 62 NETLARLARELGLGKYLRLGKGEEKSGG--RLRPKILADVFEALIGAIYLDG--GFEAAR 117
Query: 1354 RIFKPILSPIVTPD 1367
+ +L P++
Sbjct: 118 KFLLRLLGPLIEEI 131
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. Length = 133 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 389 AVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYL 448
K+ + L L + + +IF + A + + FL V +
Sbjct: 260 RRIAIASERKIAAVRGLLLKHARGDKT--LIFASDVEHAYEIAKL-----FLAPGIVEAI 312
Query: 449 TGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508
TG T + ++ +LE FR G + +L V++EG+ +P+ +I + +
Sbjct: 313 TGETP------KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLF 366
Query: 509 IQSRGR 514
IQ GR
Sbjct: 367 IQRLGR 372
|
Length = 442 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 461 KVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
K Q+E VL F+ GK ++ ATDV G+ V + YVI FD P + Y+ GR
Sbjct: 411 KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467
|
Length = 545 |
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 907 LKDMVVLAIH---TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 963
LK + V H T R Y I + +++ F+ + + +YF EKY I L +P
Sbjct: 32 LKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPN 91
Query: 964 QPLLRLKQSHNP 975
P L++ + P
Sbjct: 92 LPCLQVGRKGKP 103
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 114 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 5e-05
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK--------LIIFLAPTVHLVHQ-QY 110
+ I +TG GKT A LI I Q +++ K+ LII APT LV Q
Sbjct: 125 HDAIGRAQTGTGKT--AAFLISIINQLLQTPPPKERYMGEPRALII--APTRELVVQIAK 180
Query: 111 DVIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDI 168
D + +T V + G G+D +D Q Q E D+LV TP LLD ++ + LD+
Sbjct: 181 DAAALTKYTGLNVMTFVG--GMD-FDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDM 237
Query: 169 VCFIVIDECHHA--TGNHPYTK-IMKEFYHKSDNKPKVFGMT 207
V +V+DE G P + I+++ K + + +F T
Sbjct: 238 VEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSAT 279
|
Length = 475 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 461 KVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
K ++EV++SF G+V ++ AT V+ G+ + VI FD+P T+ YI GRA
Sbjct: 405 KERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459
|
Length = 518 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI----- 497
V L G + ++ V+E FR G+V++L AT VIE G+ VPN + ++
Sbjct: 483 YNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAE 536
Query: 498 RFDLPKTVSSYIQSRGR-AR-QHNSQFILM 525
RF L S Q RGR R H S +L+
Sbjct: 537 RFGL----SQLHQLRGRVGRGDHQSYCLLV 562
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-04
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 46 PRIYQL----KVFE-VAKRRNTI-AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99
PR YQ+ +V E +K +N V+ TG GKT A+ +I + IKS K+ ++FL
Sbjct: 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID---RLIKSGWVKR-VLFL 221
Query: 100 APTVHLVHQQYDVIRVHTDFE-----VEEYYGAKGVDEWDS--QCWQKEINKNDVLVMTP 152
A LV Q Y F +E+ G + + S Q I + +
Sbjct: 222 ADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRR- 280
Query: 153 QILLDALRKAFLSLDIVCFIVIDECH 178
IVIDE H
Sbjct: 281 -----------FGPGFFDLIVIDEAH 295
|
Length = 875 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 435 KKVPFLT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493
+KV +LT + T S D + K + ++ FR G +L TD++ G+ V
Sbjct: 278 RKVDYLTKKMHERDFTVSCMHGD-MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336
Query: 494 SYVIRFDLPKTVSSYIQSRGRA 515
S VI +DLP + +YI GR+
Sbjct: 337 SLVINYDLPASPENYIHRIGRS 358
|
Length = 401 |
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 964
K L +VL + + Y I +I + + S F +D TFV Y+ ++Y I + Q
Sbjct: 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFK-KSDGTEITFVEYYKKQYNIEITDLNQ 84
Query: 965 PLL 967
PLL
Sbjct: 85 PLL 87
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 117 |
| >gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT 481
E++ E + + FL L V + G + P + V+E+F+ G++++L AT
Sbjct: 487 EKLELQAAEELYEELKSFLPELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVAT 540
Query: 482 DVIEEGMHVPNCSY-VI----RFDLPKTVSSYIQSRGR-AR-QHNSQFILM 525
VIE G+ VPN + VI RF L + Q RGR R S +L+
Sbjct: 541 TVIEVGVDVPNATVMVIENAERFGL----AQLHQLRGRVGRGDLQSYCVLL 587
|
Length = 677 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-04
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKE-VLESFRGGKVNL 477
FVER+ A+ +ER V L+G P+ ++E +L F+ G++ +
Sbjct: 268 AFVERV--ARTLER--------HGYRVGVLSGDV-------PQKKRESLLNRFQKGQLEI 310
Query: 478 LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
L ATDV G+H+ YV +DLP Y+ GR
Sbjct: 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347
|
Length = 572 |
| >gnl|CDD|226583 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 384 FDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA-KVVERFVKKVPFLTH 442
+++K + + KL L+ + T +IF I +V KK+P T
Sbjct: 279 GNWNKKLQRNKLPLKLKRWLE----KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETI 334
Query: 443 LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS-YVIRFDL 501
+V S D + +KE +E+FR GK+ LL T ++E G+ PN +V+ +
Sbjct: 335 ASVH-------SED----QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH 383
Query: 502 PK-TVSSYIQSRGRARQH 518
T S+ +Q GR +
Sbjct: 384 RVFTESALVQIAGRVGRS 401
|
Length = 441 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 50 QLKVFEVA-KRRNTIAVLETGAGKTMIAVML--IKDIAQAIKSNGFKKLIIFLAPTVHLV 106
QL + R+ + +TG GKT A +L ++ I ++++ LI LAPT L
Sbjct: 56 QLAAIPLILAGRDVLGQAQTGTGKTA-AFLLPLLQKILKSVERKYVSALI--LAPTRELA 112
Query: 107 HQQYDVIR----VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN--DVLVMTPQILLDALR 160
Q + +R V YG + + Q E K D++V TP LLD ++
Sbjct: 113 VQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIK 166
Query: 161 KAFLSLDIVCFIVIDE 176
+ L L V +V+DE
Sbjct: 167 RGKLDLSGVETLVLDE 182
|
Length = 513 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 1040 LASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM---ERLELLGDSVLKYAVSCHL 1096
L S+LR E RN + L+ +ALT S S ERLE LGDSVL AV+ L
Sbjct: 6 LESRLRYEF----RN----AELLRQALTH----RSHSATHNERLEFLGDSVLNCAVAALL 53
Query: 1097 FLTYPKKHEGQLSARRSWAVCNSTLHKL 1124
F + K EG LS R+ V +L+++
Sbjct: 54 FQRFGKLDEGDLSRVRANLVKQQSLYEI 81
|
Length = 413 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
++++ LE + G++++L ATDV G+ V S V+ +D+P SY+ GR
Sbjct: 283 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGR 335
|
Length = 629 |
| >gnl|CDD|239209 cd02843, PAZ_dicer_like, PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 921 YSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979
+ + EI + S F G + +TF Y+ +KY + + + QPLL + + NLL
Sbjct: 59 FYVAEICTDLRPLSKFPGP---EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLL 114
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. Length = 122 |
| >gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 42/133 (31%)
Query: 1270 LLQEAITHASVQ-EFYCYQNL----------------YKHLQHCSTLLLS---------- 1302
LL A+THAS E + L YK S LS
Sbjct: 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNE 61
Query: 1303 ---------QITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVW 1353
+ E+++ GE G PK L D+ E+++GA+ +D L+
Sbjct: 62 TLARLAKKLGLGEFIRL--GRGEAISGG--RDKPKILADVFEALIGAIYLD--SGLEAAR 115
Query: 1354 RIFKPILSPIVTP 1366
+ +L P +
Sbjct: 116 EFIRDLLGPRLDE 128
|
Length = 129 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
L+ KV+ E E F V ++ AT+ G+ PN +VI +D+P + SY Q GRA
Sbjct: 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 1039 MLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFL 1098
M SQL + RN + L+ +ALT + + ERLE LGDSVL AV+ LF
Sbjct: 1 MPLSQLESRLRYEFRN----AELLRQALTHRSHSATHN-ERLEFLGDSVLNCAVAALLFQ 55
Query: 1099 TYPKKHEGQLSARRSWAVCNSTLHKLG 1125
+ K EG LS R+ V +L+++
Sbjct: 56 RFGKLDEGDLSRVRANLVKQQSLYEIA 82
|
Length = 467 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
+V E+F+ + ++ AT G++ PN +V+ FD+P+ + SY Q GRA
Sbjct: 277 DVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327
|
Length = 607 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 18/142 (12%)
Query: 49 YQLK-----VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
YQL+ + + I E G GKT+ + L+ + + + + P
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLA--TYLKEGKDRRGPTLVVCPLS 58
Query: 104 HLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA 162
+H + V Y+G Q K ++ DV++ T + LRK
Sbjct: 59 -TLHNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITT----YEVLRKD 113
Query: 163 FLSLDIVC-----FIVIDECHH 179
L ++ +V+DE H
Sbjct: 114 KKLLSLLNKVEWDRVVLDEAHR 135
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 36/168 (21%)
Query: 31 AVDGPSSSTNSINFIPRIY--QLKVFEVAKR-RNTIAVLETGAGKT---MIAVMLIKDIA 84
D S I R+Y Q+ + + RN + TG+GKT ++ + +
Sbjct: 54 LRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPI-----LD 108
Query: 85 QAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW-------DSQC 137
++ + L+++ PT L + Q + +R + + D+
Sbjct: 109 HLLRDPSARALLLY--PTNALANDQAERLRE---------LISDLPGKVTFGRYTGDTPP 157
Query: 138 WQKE---INKNDVLVMTPQIL-LDALRKAFLSLDI---VCFIVIDECH 178
++ N D+L+ P +L LR L + + ++V+DE H
Sbjct: 158 EERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205
|
Length = 851 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1604 | |||
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 100.0 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 100.0 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 100.0 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 100.0 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.98 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.98 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.97 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.97 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.97 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.97 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.97 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.97 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.97 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.97 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.97 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.97 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.97 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.96 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.96 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.95 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.95 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.95 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.95 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.95 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.95 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.95 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.94 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.94 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.94 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.93 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.93 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.93 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.93 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.92 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.92 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.91 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.91 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 99.91 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.91 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.91 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.91 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.91 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.9 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.9 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.9 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.9 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.9 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.89 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.88 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.88 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.88 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.87 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.87 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.87 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.87 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.86 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 99.86 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.85 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.85 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 99.85 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.85 | |
| PRK12371 | 235 | ribonuclease III; Reviewed | 99.84 | |
| PRK14718 | 467 | ribonuclease III; Provisional | 99.84 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 99.84 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.84 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.84 | |
| PRK12372 | 413 | ribonuclease III; Reviewed | 99.83 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.82 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 99.82 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.82 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.81 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.8 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.8 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.8 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.8 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.77 | |
| KOG1817 | 533 | consensus Ribonuclease [RNA processing and modific | 99.77 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.77 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.75 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.75 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.75 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.75 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.74 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.74 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.73 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.73 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.73 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.72 | |
| PRK00102 | 229 | rnc ribonuclease III; Reviewed | 99.71 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.71 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.71 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.69 | |
| TIGR02191 | 220 | RNaseIII ribonuclease III, bacterial. This family | 99.68 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.67 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.66 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.66 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.66 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.65 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.64 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.63 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.61 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.61 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.58 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.57 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.53 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.52 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.52 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 99.5 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.5 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.47 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.45 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.45 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 99.43 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.42 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.42 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.36 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.31 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 99.3 | |
| COG0571 | 235 | Rnc dsRNA-specific ribonuclease [Transcription] | 99.29 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.28 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.27 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.25 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 99.23 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.21 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 99.18 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 99.17 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 99.15 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.14 | |
| KOG3732 | 339 | consensus Staufen and related double-stranded-RNA- | 99.11 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.07 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.06 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.05 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 99.04 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.03 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.01 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.0 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 99.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 98.97 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.91 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.9 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.88 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.88 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.83 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.83 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 98.82 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.82 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.82 | |
| PF14622 | 128 | Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ | 98.81 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.71 | |
| PHA03103 | 183 | double-strand RNA-binding protein; Provisional | 98.7 | |
| smart00535 | 129 | RIBOc Ribonuclease III family. | 98.7 | |
| PHA02701 | 183 | ORF020 dsRNA-binding PKR inhibitor; Provisional | 98.69 | |
| PF00035 | 67 | dsrm: Double-stranded RNA binding motif; InterPro: | 98.65 | |
| cd00593 | 133 | RIBOc RIBOc. Ribonuclease III C terminal domain. T | 98.65 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 98.6 | |
| smart00358 | 67 | DSRM Double-stranded RNA binding motif. | 98.59 | |
| cd00048 | 68 | DSRM Double-stranded RNA binding motif. Binding is | 98.57 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.41 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.4 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.32 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 98.31 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.21 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.01 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.95 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.95 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 97.91 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.84 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.84 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.8 | |
| KOG3769 | 333 | consensus Ribonuclease III domain proteins [Transl | 97.59 | |
| PF14709 | 80 | DND1_DSRM: double strand RNA binding domain from D | 97.56 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.52 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 97.44 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 97.43 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.39 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.38 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 97.35 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.34 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.34 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.31 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.3 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.28 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.23 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.18 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.14 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.04 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.98 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 96.92 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.91 | |
| PF00636 | 114 | Ribonuclease_3: Ribonuclease III domain; InterPro: | 96.9 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.86 | |
| PF03368 | 90 | Dicer_dimer: Dicer dimerisation domain; InterPro: | 96.81 | |
| PRK06526 | 254 | transposase; Provisional | 96.66 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.59 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 96.53 | |
| PLN03202 | 900 | protein argonaute; Provisional | 96.51 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.29 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.28 | |
| PRK08181 | 269 | transposase; Validated | 96.24 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.22 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.99 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.9 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.69 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 95.56 | |
| PRK08727 | 233 | hypothetical protein; Validated | 95.46 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.44 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.42 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 95.41 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 95.36 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.3 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.29 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.28 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 95.28 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 95.17 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 95.02 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.99 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 94.97 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 94.89 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 94.85 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 94.84 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.84 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 94.82 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.76 | |
| KOG2777 | 542 | consensus tRNA-specific adenosine deaminase 1 [RNA | 94.64 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.58 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 94.53 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.44 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 94.35 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 94.34 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.34 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.19 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 94.09 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.07 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 94.06 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 94.05 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 94.05 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 94.02 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 94.01 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 93.98 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.96 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 93.79 | |
| COG1939 | 132 | Ribonuclease III family protein [Replication, reco | 93.67 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 93.57 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 93.56 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 93.3 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 93.08 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 93.06 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 92.93 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 92.57 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 92.42 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 92.39 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 92.27 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 92.11 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 92.08 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 92.07 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 92.05 | |
| PRK08116 | 268 | hypothetical protein; Validated | 91.78 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 91.59 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 91.57 | |
| KOG4334 | 650 | consensus Uncharacterized conserved protein, conta | 91.47 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 91.46 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.41 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 91.31 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 91.18 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 90.89 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 90.88 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 90.86 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 90.83 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 90.67 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 90.56 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 90.41 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 90.29 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 90.26 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 90.01 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 89.91 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 89.9 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 89.88 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 89.87 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 89.75 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 89.69 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 89.45 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 89.39 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 89.35 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 89.26 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 89.08 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 89.02 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 88.97 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 88.87 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 88.8 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 88.79 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 88.72 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 88.65 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 88.62 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 88.51 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 88.33 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 88.3 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 88.28 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 88.19 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 88.17 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 88.03 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 87.98 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 87.93 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 87.9 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 87.88 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 87.88 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 87.67 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 87.66 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 87.66 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 87.65 | |
| PF11469 | 120 | Ribonucleas_3_2: Ribonuclease III; InterPro: IPR02 | 87.47 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 87.13 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 87.09 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 87.03 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 87.02 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 86.99 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 86.88 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 86.85 | |
| PF13173 | 128 | AAA_14: AAA domain | 86.82 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 86.77 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 86.72 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 86.71 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 86.67 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 86.54 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 86.46 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 86.45 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 86.1 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 86.05 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 85.99 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 85.85 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 85.81 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 85.77 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 85.67 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 85.51 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 85.47 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 85.46 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 85.27 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 85.14 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 84.91 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 84.85 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 84.44 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 84.33 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 84.04 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 84.02 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 83.75 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 83.73 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 83.7 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 83.69 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 83.65 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 83.57 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 83.36 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 83.3 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 83.29 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 83.22 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 83.22 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 83.15 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 83.15 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 83.1 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 82.92 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 82.83 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 82.81 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 82.61 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 82.49 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 82.39 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 82.34 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 82.22 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 82.1 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 82.06 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 82.0 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 81.96 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 81.93 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 81.86 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 81.75 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 81.59 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 81.44 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 81.05 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 80.61 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 80.58 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 80.5 | |
| PHA00350 | 399 | putative assembly protein | 80.27 | |
| KOG3792 | 816 | consensus Transcription factor NFAT, subunit NF90 | 80.09 |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=635.82 Aligned_cols=1301 Identities=23% Similarity=0.267 Sum_probs=774.4
Q ss_pred HHhhcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHH
Q 000379 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMK 191 (1604)
Q Consensus 113 i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~ 191 (1604)
...++...+...++......|+..+|.......++.++|++.+++.+.+++..+.+..++++||||+.... |++...|.
T Consensus 7 ~~~~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1606)
T KOG0701|consen 7 KSTHTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRHFMD 86 (1606)
T ss_pred hhcccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchhhhh
Confidence 34455666666777777777887788999999999999999999999999999999999999999999876 77777776
Q ss_pred HHHhhc-CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccch
Q 000379 192 EFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 192 ~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
..-... ...|+++|+||.+...+ +........+..++..+...+.+.++...+..|...|.+.+.-.-.......
T Consensus 87 ~~~~~~~~s~pr~~~~~a~~~~~~--~~~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~~~~~-- 162 (1606)
T KOG0701|consen 87 LSSSGPSFSVPRILGLTASLLNDK--FWLEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAEYGPL-- 162 (1606)
T ss_pred cccccCCCCcchhhhccCCCcCCC--cchhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhhhhhh--
Confidence 542211 36699999999988654 5566778889999999999999888877777888888776654311110000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH--
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE-- 348 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~-- 348 (1604)
.+ ..+ .....+ .+++-.- .-.+.........-..|+||..+.+.....+...-.....
T Consensus 163 ------~~-~~~--------~~~~~~-~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 222 (1606)
T KOG0701|consen 163 ------LI-NKD--------KLICVF-LIPDCIV----ITFQKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNPAE 222 (1606)
T ss_pred ------hc-ccc--------ceeEEe-ccCccee----eeccccchhhhhhcccCcchhhHHHHHHHhhcceeecCCHHH
Confidence 00 000 000000 0000000 0000011112223345666665544433333221100000
Q ss_pred -HH-----HHhhHHHHHHHHHHHHHHhhhcCccchh--hcc--ccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEE
Q 000379 349 -IY-----RQSSLQCKYFLEEVLHVIGSALPLADKI--FLD--FGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1604)
Q Consensus 349 -~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~I 418 (1604)
.+ ..........+....+............ .+. ...+..+ +......+-+..- .+++. ....+|
T Consensus 223 ~~~~~e~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-l~~~~~~~~v~k~--~l~~~---~~l~~i 296 (1606)
T KOG0701|consen 223 LHYCEEVFSDSELRFLMSIPRLLERLRDSKHEYIHQFEVLRKYEPHDVFR-LIHESVCPLVDKE--YLEKI---ETLSGI 296 (1606)
T ss_pred hhhhhhhcCcHHHHHHHhHHHHHHHhhhcchhhhcccceeeeecccccce-eehhhcCchhhHH--HHHhh---hhhhhe
Confidence 00 0000000000111111111110000000 000 0000000 0000011111110 22222 124679
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCC-----CCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCc
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD-----ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~-----~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~ 493 (1604)
+||+.+.++..+.+++.... -..+..+.|...... ......|.+++..|+..++|+|++|++++||+|++.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 297 IFVDQRYTAYVLLELLREIF---SNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred eecccchHHHHHHHHHHHhh---ccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 99999999999999888752 233444666432110 1122347899999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhhcccCceEEEEEeccCHHHHHHHHHHHHHHHhhhhccccCCchhhhhhcccccccccee
Q 000379 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKACTYVKTKSYI 573 (1604)
Q Consensus 494 nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~v~~~~~~~~~~l~~~~~~e~~~~~~~~~r~~~~~~l~~~~~~~~~~y~ 573 (1604)
+.|+++|.|...++|+|+.||+++.++.++++....+...... .. ..-.+.+.+ +++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~-----~s--~~~~~~i~~---------------~~l~ 431 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKN-----PS--YAYTEQIPR---------------PQLF 431 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcC-----hh--HhHHhhccc---------------chhh
Confidence 9999999999999999999999999998777765322111100 00 000000000 1111
Q ss_pred -ecCCCceechhhHHHHHHHHHhhCCCCCCCCCcceEEEEecCceEEEEEEccCCCCcc-eeecCCCCChHHHHHHHHHH
Q 000379 574 -VESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQ-TIVGPTSRNKNLSKQLVCLE 651 (1604)
Q Consensus 574 -v~~tga~l~~~~a~~~l~~yc~~l~~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~~~~-~~~g~~~~~k~~Ak~~aaf~ 651 (1604)
....| ++.||++.--.. ..-+.-+|.||.++|.+ .+.|
T Consensus 432 ~~~~~~-----------v~~~~~~~e~~~-------------~~~~~~~v~~~~~~p~~~~~~~---------------- 471 (1606)
T KOG0701|consen 432 LRLDAN-----------VNKYCARAELLK-------------HVPFLSTVVLPVNSPLKMCIVG---------------- 471 (1606)
T ss_pred cccccc-----------hHHHHHHHHhcc-------------CCCcceeEEEecCchHHHHHHH----------------
Confidence 11111 888998642211 12344578999888876 3444
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcccc--cccccc-----CCCCCCCCCccccccccccccccccCcccCCCceEEEEEEEE
Q 000379 652 ACEKLHQVGALNDHLLPSVEEPSEN--NLISKK-----NESLPGAGTTKRKELHGTTPIRALSGRWGEKCGVILHAYKFN 724 (1604)
Q Consensus 652 ac~~L~~~g~ld~~L~P~~~~~~~~--~~~~~~-----~~~~~~~g~~k~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 724 (1604)
+|.+||+.|++||+|+|.++++... ++...+ ....+.+|+++|++.|.+..++.+.+.... .+.+++.|.+.
T Consensus 472 ~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~-~~~~c~~~~~~ 550 (1606)
T KOG0701|consen 472 LCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPK-ADQPCYLYVIG 550 (1606)
T ss_pred hHHHHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccC-CCCceeeeeec
Confidence 9999999999999999999775210 110011 123457889999998887777766555543 24556666543
Q ss_pred e--eeccccc-------------cccceEEeeccccCCcCCCceeeEEeecceeEEEEecCcc-cccCHHHHHHHHHHHH
Q 000379 725 F--ACSIVTE-------------IYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQ-VHLDADQMSKAKCFQE 788 (1604)
Q Consensus 725 ~--~~~~~~~-------------~~~~~~ll~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~ 788 (1604)
. .++.+++ ....|++++-.++|. ...++++...|.++++...... ..+..++++....|+.
T Consensus 551 ~~~~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~---~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 627 (1606)
T KOG0701|consen 551 LELTMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPK---IPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLN 627 (1606)
T ss_pred cceecCCchhcccccccccCchhhhhhhcccchhhhcc---cccccceeccCchhHHHHHhhhhhhcchhhccCcchhcc
Confidence 2 1211111 123577887777775 3356777777766665443221 3467788888899999
Q ss_pred HHHHHhhhhchhcccCCCCcchhhcccccCCCCCCceEEEEeccccccCCCCCccccccccccccchhhhhhhhcccccc
Q 000379 789 LFFNGLFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAA 868 (1604)
Q Consensus 789 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~ 868 (1604)
.+|..+.. + .+.+ .+| ++. .....+.++|++... -...+.|+|.+|+.+.....++
T Consensus 628 ~~~~~v~~-~---~~~~--~~~---~~~----~~~l~~~llp~~~~~--~~~~~~i~~k~l~~iv~~~~~~--------- 683 (1606)
T KOG0701|consen 628 YIFTEVLR-L---AKIN--LEF---DPK----TAELIETLLPLNVLA--DKRAIIIVRKFLEAIVAPSDLM--------- 683 (1606)
T ss_pred cchhhhhh-h---hccc--ccc---CCc----hhhHHHHhccccccc--ccchhhhHHHHHHHHhCccccc---------
Confidence 88888764 2 1211 222 111 123457788876432 1124678898886532211111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcceeccCCCcCcccccCcEEEeccC-CceEEEEEecCCCCCCCCCCCCCCCCCchH
Q 000379 869 QCNNNGGNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHT-GRIYSIVEIVNNSSAESPFDGNTDDDSKTF 947 (1604)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~-~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty 947 (1604)
..|+.+.. .....++..++++++++-... ..-|++.++.+...|.+.|++. .|.|+
T Consensus 684 ------~~~~~~~~--------------~~~~~f~~~~~~~~~~~~rn~~~~~~~~~~v~~~~~pss~~~g~---~~~~~ 740 (1606)
T KOG0701|consen 684 ------PIPSKDEV--------------RKAKYFDGEDSQDAVGMYRNDDQPQFYVAEVLPLLAPSSLFPGL---DYETF 740 (1606)
T ss_pred ------CCCChhhh--------------hhhhhcccccchhhhhhhhcccccceeeeeeeeeccchhcCCCc---chhee
Confidence 11111110 112345666777777772221 2346899999999999999965 79999
Q ss_pred HHHHhhhccccccCCCCceEEeeccCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeCcccceeecccHHHHHHHhh
Q 000379 948 VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYL 1027 (1604)
Q Consensus 948 ~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip~~~~~~~~~ 1027 (1604)
..||..+|+..+....||++.++....+.|++.++.+..............++. ...-.-+--.+++.+++.|+.+-+
T Consensus 741 ~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~--~~es~~~~~~~h~~~~s~~~~~~~ 818 (1606)
T KOG0701|consen 741 NEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERL--KDESLEHSLIIHPALASLWRRAVC 818 (1606)
T ss_pred eeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhh--hHHHhhccCCCCcCcchhhhhhcc
Confidence 999999999999999999999999999999999985443211100000000000 000011112367889999999999
Q ss_pred cHHHHHHHHHHHhHHHHHH------------HHhc-ccC-----------------------------------------
Q 000379 1028 LPSVMQRLESLMLASQLRE------------EINC-HSR----------------------------------------- 1053 (1604)
Q Consensus 1028 lPsi~~ri~~~l~a~~l~~------------~l~~-~~~----------------------------------------- 1053 (1604)
+|.+++|++.. +...+. .+.. .|.
T Consensus 819 ~p~~v~~v~~t--g~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 896 (1606)
T KOG0701|consen 819 LPEILYRVLLT--GALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQ 896 (1606)
T ss_pred Ccchheeeccc--cceeeeecccchhhhhhhhccchhhccccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhh
Confidence 99999988432 111110 0000 000
Q ss_pred --------------------------------------------------------------------------------
Q 000379 1054 -------------------------------------------------------------------------------- 1053 (1604)
Q Consensus 1054 -------------------------------------------------------------------------------- 1053 (1604)
T Consensus 897 av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~ 976 (1606)
T KOG0701|consen 897 AVELQECIQLHEVGALDDHLVFNKGVADQVLAKRESISLATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPN 976 (1606)
T ss_pred hhhhhhhhhhhcccccccccccCccccchhhhhccccccccCcccccccccCCchhhhhhhhhcCccCCCCCCccccccc
Confidence
Q ss_pred ------------C----CCCC-------hHHHHHhhccCCCCCCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHH
Q 000379 1054 ------------N----FHIP-------SSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1110 (1604)
Q Consensus 1054 ------------~----~~~~-------~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~ 1110 (1604)
| |.+. ..+|+||||+++|.+.++|||||+||||+||++++.+||.+||..+||+|+.
T Consensus 977 ~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~ 1056 (1606)
T KOG0701|consen 977 KRSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSR 1056 (1606)
T ss_pred ccccccccccccccceeccccccccccchhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHH
Confidence 0 0011 3799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCc------ccccCCCCccccccccccCCc
Q 000379 1111 RRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDT------LEVPLDGKFFTQDTKVVVGKP 1184 (1604)
Q Consensus 1111 ~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 1184 (1604)
+|+..++|.+|+++|+..||++|++.+.|.|..|..|+.....+.+|+++... .++....+...+....+.+..
T Consensus 1057 lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~ 1136 (1606)
T KOG0701|consen 1057 LRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDS 1136 (1606)
T ss_pred HHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcc
Confidence 99999999999999999999999999999998655555566677777775221 111111111111111222333
Q ss_pred cCCC--ccccCCchhHHHHHHHHHHhhhcCChHHHH-----HHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHH
Q 000379 1185 CDMG--HRWMGSKTIADCAEALIGAYYVGGGLIAAL-----YMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDI 1257 (1604)
Q Consensus 1185 ~~~~--~~~~~~K~lADvvEAliGA~~~~~G~~~a~-----~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1257 (1604)
+..+ +.+...|++||++|||+||+|+|+|...+. ++|+|.++.+++++............+........+..+
T Consensus 1137 ~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~l 1216 (1606)
T KOG0701|consen 1137 RSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRL 1216 (1606)
T ss_pred cccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHH
Confidence 3333 688999999999999999999999998888 999999999988876665444333233333334467899
Q ss_pred HHHhCC--ccCCHHHHHHHHccCCCCC--CCchH----------------HHHHHhcccChHHHHHHHH-----------
Q 000379 1258 ESKIGY--EFTVKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITE----------- 1306 (1604)
Q Consensus 1258 e~~lgy--~F~~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~----------- 1306 (1604)
|..++| +|....++.+|++|+|+.. ..+|| .++..+.....+.++.+..
T Consensus 1217 er~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~ 1296 (1606)
T KOG0701|consen 1217 ERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDL 1296 (1606)
T ss_pred HHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhccc
Confidence 999999 9999999999999999986 45577 2233333334333332222
Q ss_pred -------------------------HHHcCCCCCCC-CC---CCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHH
Q 000379 1307 -------------------------YVKSFPKPGET-TD---SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357 (1604)
Q Consensus 1307 -------------------------~~~~~~~~~~~-~~---~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~ 1357 (1604)
++..+...... ++ .....+.|+.++|+.|+++++..+|.+.++-.+|++..
T Consensus 1297 ~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~ 1376 (1606)
T KOG0701|consen 1297 NVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEE 1376 (1606)
T ss_pred ccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhhhc
Confidence 22221111100 01 11224668999999999999999999998888999887
Q ss_pred h-----hhccccCCCCCCCCchHHHHHHHHhcCCcceeeeeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHH---HH
Q 000379 1358 P-----ILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGK---AA 1429 (1604)
Q Consensus 1358 ~-----~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~---AA 1429 (1604)
. ..++.+...+...+|.......|.+...+....+...+-..+-...+...+ .|...-...|+.. .|
T Consensus 1377 ~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~s-----p~~~td~rsa~vnn~~~a 1451 (1606)
T KOG0701|consen 1377 KLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHS-----PGVLTDLRSALVNNTIFA 1451 (1606)
T ss_pred ccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccC-----chhhhhhhhHhhccccch
Confidence 7 777777777777788888888887655433211111100000001111111 1222222222222 22
Q ss_pred HHHHHH-hhhhhhh-cccCCCCCCcCCCccccCCCCCCCCCcccccccCccccccCCCccccccccc--CCCcccccccc
Q 000379 1430 SQLLKK-LEVCEKR-ISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMT--VGTPVVAPINM 1505 (1604)
Q Consensus 1430 ~~AL~~-L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 1505 (1604)
..|++. +.++... +.............+.+.+..... ..++-++. ....+...+..
T Consensus 1452 ~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~--------------------~~~edievpKa~gdi~esiag 1511 (1606)
T KOG0701|consen 1452 SLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLF--------------------GWEEDIEVPKALGDIFESIAG 1511 (1606)
T ss_pred hhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCC--------------------Cchhhcccchhhhhhhhcccc
Confidence 222222 2221100 000000000111111110000000 00000000 00123444444
Q ss_pred ccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccc---------eeeEEEEEEEecCCceEEEeCCCCC
Q 000379 1506 KKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGF---------SSFVSKITLHIPEFGNVECNGDPRA 1576 (1604)
Q Consensus 1506 ~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~---------~~F~~~v~~~~~~~~~~~~~g~~~s 1576 (1604)
.....++-+.+.|-.+.|++|.+.++++ .++.|.+.+ -.+..++++.+.+.+.+...|....
T Consensus 1512 ai~~dsg~~~~~~~~~~~a~p~~s~~~E---------~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~ 1582 (1606)
T KOG0701|consen 1512 AIKLDSGNMMEPCIEKFWALPPRSPIRE---------LLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYR 1582 (1606)
T ss_pred eeecCcccccchHhhcCcCCCCccchhh---------hccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhh
Confidence 5567889999999999999999999998 788886322 1133445554444455555577767
Q ss_pred CccchhhhHHHHHHHHHHHcC
Q 000379 1577 DKKSSFDSAALIMLHELERQG 1597 (1604)
Q Consensus 1577 sKK~A~~~AA~~~l~~l~~~~ 1597 (1604)
++|.|+.+||.+.+..+.+++
T Consensus 1583 ~aK~s~~k~A~~ll~~~~~~~ 1603 (1606)
T KOG0701|consen 1583 IAKASAAKAALKLLKKLGLQK 1603 (1606)
T ss_pred hhhhhHHHHHHHHHHHhhhhh
Confidence 677777777777777666554
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-53 Score=479.88 Aligned_cols=476 Identities=24% Similarity=0.340 Sum_probs=309.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 35 PSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 35 ~~~~~~~~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..++..+..+++|.||......++.+|++|++|||.|||+||+++|...+. +.++ ++|||+||++||.|+++.++
T Consensus 5 ~~~~i~p~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~----~~~~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 5 AHPLIKPNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLR----WFGG-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred hccccccccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHH----hcCC-eEEEecCCchHHHHHHHHHH
Confidence 345667778999999999999999999999999999999999999987765 3344 79999999999999999999
Q ss_pred hhcCC---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHH
Q 000379 115 VHTDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1604)
Q Consensus 115 ~~~~~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 191 (1604)
+.+++ .+..++|....+. ....|. ..+|+|+|||++.|.+.+|.+++.++.+|||||||+++|+++|..+++
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~-R~~~w~----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~ 154 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEE-REELWA----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAK 154 (542)
T ss_pred HHhCCChhheeeecCCCChHH-HHHHHh----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHH
Confidence 99986 5778999887764 445576 789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--cchhhhhhccCCcceeeeeccCCCccccc
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
+|. .....|+||||||||... .+.+.+...+|+..-..+ .+..++..|+.+.+..-+ ..+
T Consensus 155 ~y~-~~~k~~~ilgLTASPGs~---------~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~i--------kV~ 216 (542)
T COG1111 155 EYL-RSAKNPLILGLTASPGSD---------LEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWI--------KVD 216 (542)
T ss_pred HHH-HhccCceEEEEecCCCCC---------HHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEE--------ecc
Confidence 764 455679999999999865 477888888888743333 244566666654322211 122
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhh-hhhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNC-YKDMDD--KHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 346 (1604)
+...+......+...+......+... +..... ..+++.... .......... .. ..++....+...+.-...-
T Consensus 217 lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~---~~~~~~a~~~-~~-~~~~~l~~~a~~~kl~~a~ 291 (542)
T COG1111 217 LPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELR---QIRLIMAKNE-DS-DKFRLLSVLAEAIKLAHAL 291 (542)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHH---HHHHHhccCc-cH-HHHHHHHHHHHHHHHHHHH
Confidence 22233322222222222111111110 000000 000000000 0000000000 00 0000000000000000000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCC-------cccccccCCCCHHHHHHHHHHHhh-CCCCCcEEE
Q 000379 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFD-------YSKAVDLGYISTKLHELLQLFLSF-GKSTQVLCI 418 (1604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~K~~~L~~lL~~~-~~~~~~~~I 418 (1604)
.-...+....+..|+++..+...... ......+..+.. ...........||+..+.+++.++ ..+.+.|+|
T Consensus 292 elletqGi~~~~~Yl~~l~e~~~~~~-sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvI 370 (542)
T COG1111 292 ELLETQGIRPFYQYLEKLEEEATKGG-SKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVI 370 (542)
T ss_pred HHHHhhChHHHHHHHHHHHHHhcccc-hHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEE
Confidence 00001111122222222211111100 000000000000 001123445689999999999754 356678999
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeE-EEEEcCCC--CCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccE
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTV-AYLTGSTT--SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSY 495 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~-~~l~G~~~--~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nl 495 (1604)
||++.|.||+.|.++|... +..+ ..+.|.++ +..+|++++|.+++++||.|++|+||||||+|||||||.|++
T Consensus 371 VFT~yRdTae~i~~~L~~~----~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDl 446 (542)
T COG1111 371 VFTEYRDTAEEIVNFLKKI----GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDL 446 (542)
T ss_pred EEehhHhHHHHHHHHHHhc----CCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccE
Confidence 9999999999999999985 3333 36777653 347899999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHHHHHHHhhhhcccCc-eEEEEEeccCHHHHHHHHHHHHHHHhhhh
Q 000379 496 VIRFDLPKTVSSYIQSRGRARQHNS-QFILMLERGNLKQRNKLFDIIRSERSVTD 549 (1604)
Q Consensus 496 VI~fD~p~s~~syiQr~GRA~R~gs-~~i~~v~~~~~~~~~~l~~~~~~e~~~~~ 549 (1604)
||+||+-.|.+.+|||+||+||..+ ++++++.+++. ++......++++..|.+
T Consensus 447 VifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtr-deayy~~s~rke~~m~e 500 (542)
T COG1111 447 VIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTR-DEAYYYSSRRKEQKMIE 500 (542)
T ss_pred EEEecCCcHHHHHHHhhCccccCCCCeEEEEEecCch-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 56777777643 34444455555555543
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=473.61 Aligned_cols=449 Identities=25% Similarity=0.343 Sum_probs=295.2
Q ss_pred CCCCCCCCCCCCCCCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 29 ~~~~~~~~~~~~~~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
..+.+....+.++..+.+|+||.|+.+.|+++|+||++|||+|||+||+.++.++++ +.++.+|||+|||+.||.|
T Consensus 46 ~~~~s~~~~~~~p~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~r----w~p~~KiVF~aP~~pLv~Q 121 (746)
T KOG0354|consen 46 SLDESAAQRWIYPTNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFE----WRPKGKVVFLAPTRPLVNQ 121 (746)
T ss_pred CCChhhhccccccCcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHh----cCCcceEEEeeCCchHHHH
Confidence 344444577888999999999999999999999999999999999999999999886 4566789999999999999
Q ss_pred HHHHHHhhc-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCc-cceeEEEEeCcccccCCChH
Q 000379 109 QYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL-DIVCFIVIDECHHATGNHPY 186 (1604)
Q Consensus 109 ~~~~i~~~~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l-~~i~llI~DEaH~~~~~~~~ 186 (1604)
|...+...+ +..+....|+.....-..+.| ...+|+|+|||+|.+.|.++...- +.|.+||||||||+.++|+|
T Consensus 122 Q~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 122 QIACFSIYLIPYSVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHhhccCcccceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 997777655 455666666643332223334 479999999999999999887655 99999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--cchhhhhhccCCcceeeeeccCCC
Q 000379 187 TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSK 264 (1604)
Q Consensus 187 ~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~ 264 (1604)
+.||+.|.......+|||||||||.. +..++.+.+..|...|+.+.... ....++.++...|.. ..
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~-----~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~------ 265 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGS-----KLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LS------ 265 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCc-----cHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HH------
Confidence 99999887666666799999999983 34567778888887777643322 123344444443322 11
Q ss_pred ccccchhhhhhhhhhhhchhHHHHHHhHhh-----------hhhh------------hhhHHHH-HHHHHHHHHHHHHHH
Q 000379 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLN-----------CYKD------------MDDKHKT-LRKQLSDYHAKILYC 320 (1604)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~------------~~~~~~~-~~~~l~~~~~~~~~~ 320 (1604)
..+......|...+.++...+.. .|.. .+..-.. +. ...........
T Consensus 266 -------~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~--~~~~~~~~~~l 336 (746)
T KOG0354|consen 266 -------LCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFY--ALHLRKYNLAL 336 (746)
T ss_pred -------HhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHH--HHHHHHHHHHH
Confidence 11111111111111111111110 0000 0000000 00 00000000001
Q ss_pred HHHhhhH--HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHH
Q 000379 321 LDELGLI--CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK 398 (1604)
Q Consensus 321 ~~~lG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 398 (1604)
+..-|+. .++.+.....++..... . ...........++......+... .......++|
T Consensus 337 l~~~gir~~~~l~~~~~f~~e~~~~k-~--~~~~~e~~~~~~~~~~m~~~~~l-----------------~~~~~~~npk 396 (746)
T KOG0354|consen 337 LISDGIRFVDALDYLEDFYEEVALKK-Y--LKLELEARLIRNFTENMNELEHL-----------------SLDPPKENPK 396 (746)
T ss_pred HhhcchhhHHHHhhhhhhccccchhH-H--HHHHhcchhhHHHHHHHHhhhhh-----------------hcCCCccChh
Confidence 1111111 11111100000000000 0 00000000001111111111111 1112245899
Q ss_pred HHHHHHHHH-hhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCC--CCCCCHHHHHHHHHHHhCCCc
Q 000379 399 LHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 399 ~~~L~~lL~-~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
+..|.++|. .|...++.|+||||++|..|..|.++|.+. -..++++..+.|.+.+ ..+|++++|++++++||+|++
T Consensus 397 le~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~ 475 (746)
T KOG0354|consen 397 LEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEI 475 (746)
T ss_pred HHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCc
Confidence 999999885 455567889999999999999999999862 2246789999987644 368999999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCceEEEEEe
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLE 527 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~v~ 527 (1604)
||||||+|+||||||+.||+||+||...|+..++||+||+|..+|++++++.
T Consensus 476 NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t 527 (746)
T KOG0354|consen 476 NVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTT 527 (746)
T ss_pred cEEEEecchhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEEc
Confidence 9999999999999999999999999999999999999996666778777777
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=392.97 Aligned_cols=345 Identities=21% Similarity=0.306 Sum_probs=265.0
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHH---HhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~---~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...-.|.|+|...++.++ +++++..+.||||||+.+++++...+.. ....+..+++|+|+||++|+.|..++++.+
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 345679999999999998 5999999999999999999987766652 123556788999999999999999999887
Q ss_pred c---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHH
Q 000379 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1604)
Q Consensus 117 ~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~ 193 (1604)
. +++..+++|+.....+ ...+..+.+|+|+||++|++++..+.+.++++.++|+|||+++.+. .+...++.+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q----~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldm-GFe~qI~~I 263 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQ----LRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDM-GFEPQIRKI 263 (519)
T ss_pred cCCCCccEEEEeCCCCccHH----HHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcc-ccHHHHHHH
Confidence 5 5679999999876553 2344557999999999999999999999999999999999999875 466666766
Q ss_pred HhhcCCCC-cEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 194 YHKSDNKP-KVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 194 ~~~~~~~p-~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
....++.. +.+..|||=. ..++.|-.. |...|....+-+..
T Consensus 264 l~~i~~~~rQtlm~saTwp------------~~v~~lA~~----------------fl~~~~~i~ig~~~---------- 305 (519)
T KOG0331|consen 264 LSQIPRPDRQTLMFSATWP------------KEVRQLAED----------------FLNNPIQINVGNKK---------- 305 (519)
T ss_pred HHhcCCCcccEEEEeeecc------------HHHHHHHHH----------------HhcCceEEEecchh----------
Confidence 66664444 5899999922 112222221 11111111110000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
. +.
T Consensus 306 --------------------------------~----~~----------------------------------------- 308 (519)
T KOG0331|consen 306 --------------------------------E----LK----------------------------------------- 308 (519)
T ss_pred --------------------------------h----hh-----------------------------------------
Confidence 0 00
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
...-+..+.. .+ ....|...|..+|..+......|+||||+++.+|+.|.+
T Consensus 309 ----a~~~i~qive----~~---------------------~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 309 ----ANHNIRQIVE----VC---------------------DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred ----hhcchhhhhh----hc---------------------CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHH
Confidence 0000000000 00 124678888888888766677899999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHh
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~ 512 (1604)
.|.. .++.+..+||+ .++.+|..+|+.||+|+++|||||+|+++|||||++++||+||+|.+..+|+||.
T Consensus 360 ~l~~----~~~~a~~iHGd------~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRi 429 (519)
T KOG0331|consen 360 NLRR----KGWPAVAIHGD------KSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRI 429 (519)
T ss_pred HHHh----cCcceeeeccc------ccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhc
Confidence 9987 36899999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCce--EEEEEeccCHHHHHHHHHHHHHH
Q 000379 513 GRARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 513 GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
||+||+|.+ .+.|+...+......+.+++++.
T Consensus 430 GRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 430 GRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred CccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 999998764 67777777777777777666543
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=356.26 Aligned_cols=334 Identities=20% Similarity=0.288 Sum_probs=266.8
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cC
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~ 118 (1604)
...|.+.|.++++.+++ +++|+.+.||||||.+++++|.+.+- ..+....++||+||++|+.|+++.+... +|
T Consensus 81 ~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL---~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLL---QEPKLFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred cCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHH---cCCCCceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 56799999999999985 99999999999999999998877553 2445578999999999999999999876 58
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHH-hcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR-KAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~-~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+++..+.||++.... -......++|+|+||+.|.+++. .+.+++.++.++|+|||+++.+. .|...+..++...
T Consensus 158 lr~~~lvGG~~m~~q----~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~-dF~~~ld~ILk~i 232 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQ----ANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM-DFEEELDYILKVI 232 (476)
T ss_pred eEEEEEecCchHHHH----HHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh-hhHHHHHHHHHhc
Confidence 999999999875432 24456789999999999999998 56789999999999999999876 7888888888777
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh-cCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
+...+.+++|||...+ +.+|... ++ .|.....
T Consensus 233 p~erqt~LfsATMt~k------------v~kL~rasl~-----------------~p~~v~~------------------ 265 (476)
T KOG0330|consen 233 PRERQTFLFSATMTKK------------VRKLQRASLD-----------------NPVKVAV------------------ 265 (476)
T ss_pred CccceEEEEEeecchh------------hHHHHhhccC-----------------CCeEEec------------------
Confidence 8888999999996432 3444421 11 1111100
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
.+.|..++. +
T Consensus 266 ----------------s~ky~tv~~--------l---------------------------------------------- 275 (476)
T KOG0330|consen 266 ----------------SSKYQTVDH--------L---------------------------------------------- 275 (476)
T ss_pred ----------------cchhcchHH--------h----------------------------------------------
Confidence 000000000 0
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
.+.|+ .+ ....|...|+.+|+.... ...||||++-.++..+.-+|..
T Consensus 276 kQ~yl---------fv---------------------~~k~K~~yLV~ll~e~~g---~s~iVF~~t~~tt~~la~~L~~ 322 (476)
T KOG0330|consen 276 KQTYL---------FV---------------------PGKDKDTYLVYLLNELAG---NSVIVFCNTCNTTRFLALLLRN 322 (476)
T ss_pred hhheE---------ec---------------------cccccchhHHHHHHhhcC---CcEEEEEeccchHHHHHHHHHh
Confidence 00000 00 013467788888886543 4789999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
+ ++.+..+||. |++..|...+++|++|.++|||||+|+++|+|+|.+++|||||.|.+..+||||+||++
T Consensus 323 l----g~~a~~LhGq------msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 323 L----GFQAIPLHGQ------MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTA 392 (476)
T ss_pred c----Ccceecccch------hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHccccc
Confidence 5 7889999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc--eEEEEEeccCHHHHHHHHHHHHHH
Q 000379 517 QHNS--QFILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 517 R~gs--~~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
|.|. +.|.+++.-+.+...++|..++++
T Consensus 393 RaGrsG~~ItlVtqyDve~~qrIE~~~gkk 422 (476)
T KOG0330|consen 393 RAGRSGKAITLVTQYDVELVQRIEHALGKK 422 (476)
T ss_pred ccCCCcceEEEEehhhhHHHHHHHHHHhcC
Confidence 9994 589999988888888888877653
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=412.63 Aligned_cols=458 Identities=24% Similarity=0.351 Sum_probs=284.5
Q ss_pred CCCCCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 39 TNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 39 ~~~~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
..+..++||+||.+++..++++|+|+++|||+|||++|++++.+++. .+++++|||+||++|+.||.+.++++++
T Consensus 9 ~~~~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 9 IKPNTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCcCcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 34456899999999999999999999999999999999999888764 2456799999999999999999999887
Q ss_pred C---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 119 F---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 119 ~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
. ++..++|+...+. +.....+++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.+..++..|..
T Consensus 84 ~~~~~v~~~~g~~~~~~-----r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~ 158 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-----RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHE 158 (773)
T ss_pred CCCceEEEEeCCCCHHH-----HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHh
Confidence 6 7888888765432 2233347899999999999999889999999999999999999999999999887654
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--cchhhhhhccCCcceeeeeccCCCccccchhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGK 273 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~ 273 (1604)
....|+++||||||..+ .+.+..+...|+...... .....+..+...+........ +...
T Consensus 159 -~~~~~~il~lTaTP~~~---------~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~--------l~~~ 220 (773)
T PRK13766 159 -DAKNPLVLGLTASPGSD---------EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVE--------LPEE 220 (773)
T ss_pred -cCCCCEEEEEEcCCCCC---------HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeC--------CcHH
Confidence 34578999999999754 345666666666543322 233445555554322222111 1111
Q ss_pred hhhhhhhhchhHHHHHHhHhhhh-h-hhh--hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH-
Q 000379 274 LEVSWSKFDASLSKLQGSQLNCY-K-DMD--DKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE- 348 (1604)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~~~~-~-~~~--~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~- 348 (1604)
+......+...+......+...- . ... .....+ ......+...+..... ..+........ +........
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l----~~~~~~~~~~l~~~~~-~~~~~~~~~~~-~~~l~~~~~~ 294 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKEL----LGLQKKLQQEIANDDS-EGYEAISILAE-AMKLRHAVEL 294 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHH----HHHHHHHHHHhhcCch-HHHHHHHHHHH-HHHHHHHHHH
Confidence 11111111111111111110000 0 000 000000 0000000000000000 00000000000 000000000
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhc-Cccchhhcccc-C--CcccccccCCCCHHHHHHHHHHHhhC-CCCCcEEEEEEch
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSAL-PLADKIFLDFG-F--DYSKAVDLGYISTKLHELLQLFLSFG-KSTQVLCIIFVER 423 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~--~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~~~~IIFv~~ 423 (1604)
...........|+........... ......+.... . ...........++|+..|.++|.... ..++.++||||++
T Consensus 295 l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~ 374 (773)
T PRK13766 295 LETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQY 374 (773)
T ss_pred HHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 000000111111111111000000 00000000000 0 00000011234799999999997643 2456799999999
Q ss_pred HHHHHHHHHHHhhCCCCCCeeEEEEEcCCCC--CCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC
Q 000379 424 IIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1604)
Q Consensus 424 r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~ 501 (1604)
+.++..|.+.|.. .++.+..++|.+.. ..+|++.+|.+++++|++|++++||||++++||+|+|+|++||+||+
T Consensus 375 ~~t~~~L~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~ 450 (773)
T PRK13766 375 RDTAEKIVDLLEK----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP 450 (773)
T ss_pred HHHHHHHHHHHHh----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC
Confidence 9999999999976 46778889987432 24689999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhhcccCc-eEEEEEeccCHHHH
Q 000379 502 PKTVSSYIQSRGRARQHNS-QFILMLERGNLKQR 534 (1604)
Q Consensus 502 p~s~~syiQr~GRA~R~gs-~~i~~v~~~~~~~~ 534 (1604)
|++...|+||+||+||.|. ++++|+..++.++.
T Consensus 451 ~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~ 484 (773)
T PRK13766 451 VPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEA 484 (773)
T ss_pred CCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHH
Confidence 9999999999999999774 57777777766553
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=394.04 Aligned_cols=341 Identities=20% Similarity=0.259 Sum_probs=251.7
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHH--hhCCCCeEEEEEecChhhHHHHHHHHHhhc--
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~--~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-- 117 (1604)
..+|+++|.++++.++ ++|+|+++|||||||+++++++...+... ...+.++.+|||+||++|+.|+.++++.+.
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 3469999999999998 59999999999999999999765544311 122346789999999999999999998864
Q ss_pred -CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 -~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++++..++|+.... ..+......++|+|+||++|++++.++...+.++++||+||||++... .+...+..+...
T Consensus 230 ~~i~~~~~~gg~~~~----~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~-gf~~~i~~il~~ 304 (545)
T PTZ00110 230 SKIRNTVAYGGVPKR----GQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVSQ 304 (545)
T ss_pred cCccEEEEeCCCCHH----HHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhc-chHHHHHHHHHh
Confidence 57888888876533 234445568999999999999999999999999999999999999865 455555555555
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
.....+++++|||... .+..+...+-. ..|.... ........
T Consensus 305 ~~~~~q~l~~SAT~p~------------~v~~l~~~l~~---------------~~~v~i~--vg~~~l~~--------- 346 (545)
T PTZ00110 305 IRPDRQTLMWSATWPK------------EVQSLARDLCK---------------EEPVHVN--VGSLDLTA--------- 346 (545)
T ss_pred CCCCCeEEEEEeCCCH------------HHHHHHHHHhc---------------cCCEEEE--ECCCcccc---------
Confidence 5667899999999531 12222221100 0000000 00000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
T Consensus 347 -------------------------------------------------------------------------------- 346 (545)
T PTZ00110 347 -------------------------------------------------------------------------------- 346 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
...+... + .......|...|.+++.... ....++||||+++.+|+.|++.|..
T Consensus 347 --------~~~i~q~-------~-----------~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 347 --------CHNIKQE-------V-----------FVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred --------CCCeeEE-------E-----------EEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH
Confidence 0000000 0 00001235555556665443 1456999999999999999999986
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.+..+|+||+||+|
T Consensus 400 ----~g~~~~~ihg~------~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 400 ----DGWPALCIHGD------KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred ----cCCcEEEEECC------CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 46788999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccCHHHHHHHHHHHHH
Q 000379 517 QHNSQ--FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|.|.+ +++|++..+......+.+.++.
T Consensus 470 R~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 470 RAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred cCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 99864 7888888777766777766654
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=387.51 Aligned_cols=339 Identities=22% Similarity=0.317 Sum_probs=245.4
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh----hCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
...|+++|.++++.++ ++|+|+++|||||||++|++++...+.... ....+.++|||+||++|+.|+.+.++.+.
T Consensus 141 ~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 141 YEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3579999999999998 589999999999999999998766543221 12246789999999999999988877653
Q ss_pred ---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 118 ---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 118 ---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
++++..++|+..... .......+++|+|+||++|.+++.++.+.++++.+|||||||++.+.. +...+...+
T Consensus 221 ~~~~~~~~~~~gG~~~~~----q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g-f~~~i~~i~ 295 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQ----QLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG-FRDQVMQIF 295 (518)
T ss_pred CCCCceEEEEECCcchHH----HHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc-hHHHHHHHH
Confidence 577888888765432 122344578999999999999999989999999999999999998753 443333333
Q ss_pred hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhh
Q 000379 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1604)
Q Consensus 195 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~ 274 (1604)
... +.++++++|||... .+..+...+........ ..........+
T Consensus 296 ~~l-~~~q~l~~SATl~~------------~v~~l~~~~~~~~~~i~------------------~~~~~~~~~~v---- 340 (518)
T PLN00206 296 QAL-SQPQVLLFSATVSP------------EVEKFASSLAKDIILIS------------------IGNPNRPNKAV---- 340 (518)
T ss_pred HhC-CCCcEEEEEeeCCH------------HHHHHHHHhCCCCEEEE------------------eCCCCCCCcce----
Confidence 333 46899999999642 23333332221110000 00000000000
Q ss_pred hhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 000379 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1604)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1604)
.
T Consensus 341 ~------------------------------------------------------------------------------- 341 (518)
T PLN00206 341 K------------------------------------------------------------------------------- 341 (518)
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHH
Q 000379 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1604)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L 434 (1604)
.. . .......|...|.+++.... ....++||||+++..++.|++.|
T Consensus 342 ---------------q~-------~-----------~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L 387 (518)
T PLN00206 342 ---------------QL-------A-----------IWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAI 387 (518)
T ss_pred ---------------EE-------E-----------EeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHH
Confidence 00 0 00000123344455554322 12247999999999999999998
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhh
Q 000379 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1604)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GR 514 (1604)
... .++++..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||
T Consensus 388 ~~~---~g~~~~~~Hg~------~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGR 458 (518)
T PLN00206 388 TVV---TGLKALSIHGE------KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGR 458 (518)
T ss_pred hhc---cCcceEEeeCC------CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 753 46788999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 515 ARQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 515 A~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|||.|. .+++|+..++......+.+.++.
T Consensus 459 aGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 459 ASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred cccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 999985 47888887766666666666554
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=380.85 Aligned_cols=334 Identities=20% Similarity=0.233 Sum_probs=243.9
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhh----CCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~- 116 (1604)
...|+++|.++++.++ ++|+|+++|||||||+++++++.+.+..... ...+.++|||+||++|+.|+++.+...
T Consensus 28 ~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~ 107 (423)
T PRK04837 28 FHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLA 107 (423)
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHh
Confidence 4578999999999987 5899999999999999999988776542211 123467999999999999998887764
Q ss_pred --cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 117 --~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
+++++..++|+.+.+. .+.....+++|+|+||++|.+.+.++.+.++++++||+||||++... .+...+..++
T Consensus 108 ~~~~~~v~~~~gg~~~~~----~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~-~f~~~i~~i~ 182 (423)
T PRK04837 108 QATGLKLGLAYGGDGYDK----QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDL-GFIKDIRWLF 182 (423)
T ss_pred ccCCceEEEEECCCCHHH----HHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhc-ccHHHHHHHH
Confidence 4789999999876443 23333457899999999999999999999999999999999999765 4555555555
Q ss_pred hhcCC--CCcEEEEeccCCCCCCCCCcccHHHHHHHHH-hhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 195 HKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISELE-STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 195 ~~~~~--~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le-~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
...+. ..+.+++|||.... +..+. ..++. |....+ .+.......
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~~------------~~~~~~~~~~~-----------------p~~i~v--~~~~~~~~~-- 229 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSYR------------VRELAFEHMNN-----------------PEYVEV--EPEQKTGHR-- 229 (423)
T ss_pred HhCCCccceeEEEEeccCCHH------------HHHHHHHHCCC-----------------CEEEEE--cCCCcCCCc--
Confidence 44432 23468999996421 11111 11211 110000 000000000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 230 -------------------------------------------------------------------------------- 229 (423)
T PRK04837 230 -------------------------------------------------------------------------------- 229 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
+... ........|...|..++... ...++||||+++..++.++
T Consensus 230 ----------------i~~~------------------~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~ 272 (423)
T PRK04837 230 ----------------IKEE------------------LFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIW 272 (423)
T ss_pred ----------------eeEE------------------EEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHH
Confidence 0000 00000123555555555442 2358999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+.|.. .++.+..+||+ |++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||
T Consensus 273 ~~L~~----~g~~v~~lhg~------~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR 342 (423)
T PRK04837 273 GHLAA----DGHRVGLLTGD------VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHR 342 (423)
T ss_pred HHHHh----CCCcEEEecCC------CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEec
Confidence 99987 47889999998 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCce--EEEEEeccCHHHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
+||+||.|.. .+.|+.+.+......+++.+
T Consensus 343 ~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~ 374 (423)
T PRK04837 343 IGRTGRAGASGHSISLACEEYALNLPAIETYI 374 (423)
T ss_pred cccccCCCCCeeEEEEeCHHHHHHHHHHHHHh
Confidence 9999999964 77787765554445454433
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=381.64 Aligned_cols=335 Identities=19% Similarity=0.212 Sum_probs=242.5
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhh---CCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS---NGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~---~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
...|+++|.++++.++. +|+|+.+|||+|||+++++++.+.+..... .....++|||+||++|+.|+.+.++.+.
T Consensus 21 ~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~ 100 (456)
T PRK10590 21 YREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK 100 (456)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 34799999999999985 999999999999999999988776642111 1123479999999999999999998754
Q ss_pred --CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 --~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
++++..++|+.+.+. .+......++|+|+||+.|++.+.+..+.++++++||+||||++.... +...+...+.
T Consensus 101 ~~~~~~~~~~gg~~~~~----~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~-~~~~i~~il~ 175 (456)
T PRK10590 101 YLNIRSLVVFGGVSINP----QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG-FIHDIRRVLA 175 (456)
T ss_pred cCCCEEEEEECCcCHHH----HHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc-cHHHHHHHHH
Confidence 678888999876443 234445678999999999999999988999999999999999998653 3333444444
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
..+...+++++|||+.. .+..+...+. ..|....+....... .. +.
T Consensus 176 ~l~~~~q~l~~SAT~~~------------~~~~l~~~~~----------------~~~~~i~~~~~~~~~--~~----i~ 221 (456)
T PRK10590 176 KLPAKRQNLLFSATFSD------------DIKALAEKLL----------------HNPLEIEVARRNTAS--EQ----VT 221 (456)
T ss_pred hCCccCeEEEEeCCCcH------------HHHHHHHHHc----------------CCCeEEEEecccccc--cc----ee
Confidence 55666789999999642 2233322211 111110000000000 00 00
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
. .+...
T Consensus 222 ~------------------~~~~~-------------------------------------------------------- 227 (456)
T PRK10590 222 Q------------------HVHFV-------------------------------------------------------- 227 (456)
T ss_pred E------------------EEEEc--------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
....|...|..++.. ....++||||+++..++.|++.|.
T Consensus 228 --------------------------------------~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 228 --------------------------------------DKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred --------------------------------------CHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHH
Confidence 001122222222322 223579999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
. .++.+..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+|||
T Consensus 267 ~----~g~~~~~lhg~------~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 267 K----DGIRSAAIHGN------KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred H----CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 7 46889999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEEeccCHHHHHHHHHHH
Q 000379 516 RQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 516 ~R~gs~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
||.|.. .++|+...+....+.+++.+
T Consensus 337 GR~g~~G~ai~l~~~~d~~~~~~ie~~l 364 (456)
T PRK10590 337 GRAAATGEALSLVCVDEHKLLRDIEKLL 364 (456)
T ss_pred ccCCCCeeEEEEecHHHHHHHHHHHHHh
Confidence 999864 67777765555445555443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=382.65 Aligned_cols=329 Identities=19% Similarity=0.256 Sum_probs=246.6
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
.-+|+++|.++++.++ ++|+|+++|||+|||+++++++.+.+. ......+++||+||++|+.|++++++.+.
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~---~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLD---VKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhh---hccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 3468999999999997 489999999999999999998887664 22234569999999999999999998753
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++++..++|+.+.+.. +.....+++|+|+||++|.+.+.++.+.++++++|||||||++... .|...+...+...
T Consensus 101 ~~~v~~~~Gg~~~~~~----~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~-g~~~~l~~i~~~~ 175 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQ----IDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM-GFQDAIDAIIRQA 175 (460)
T ss_pred CcEEEEEECCCChHHH----HHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc-CcHHHHHHHHHhC
Confidence 6889999998765432 2333467899999999999999999999999999999999999765 4555555566566
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+...+++++|||+.. .+..+...+. ..|......-. ... .. +
T Consensus 176 ~~~~q~ll~SAT~~~------------~~~~l~~~~~----------------~~~~~i~~~~~-~~~--~~----i--- 217 (460)
T PRK11776 176 PARRQTLLFSATYPE------------GIAAISQRFQ----------------RDPVEVKVEST-HDL--PA----I--- 217 (460)
T ss_pred CcccEEEEEEecCcH------------HHHHHHHHhc----------------CCCEEEEECcC-CCC--CC----e---
Confidence 677889999999742 1222222211 11111000000 000 00 0
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
T Consensus 218 -------------------------------------------------------------------------------- 217 (460)
T PRK11776 218 -------------------------------------------------------------------------------- 217 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
... .. ......|...|..++.... ..++||||+++..++.+++.|..
T Consensus 218 -----------~~~-------~~-----------~~~~~~k~~~l~~ll~~~~---~~~~lVF~~t~~~~~~l~~~L~~- 264 (460)
T PRK11776 218 -----------EQR-------FY-----------EVSPDERLPALQRLLLHHQ---PESCVVFCNTKKECQEVADALNA- 264 (460)
T ss_pred -----------eEE-------EE-----------EeCcHHHHHHHHHHHHhcC---CCceEEEECCHHHHHHHHHHHHh-
Confidence 000 00 0001235556666665432 34799999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.++.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||+||
T Consensus 265 ---~~~~v~~~hg~------~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR 335 (460)
T PRK11776 265 ---QGFSALALHGD------LEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGR 335 (460)
T ss_pred ---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccC
Confidence 47889999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce--EEEEEeccCHHHHHHHHH
Q 000379 518 HNSQ--FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 518 ~gs~--~i~~v~~~~~~~~~~l~~ 539 (1604)
.|+. .+.|+.+.+....+.+++
T Consensus 336 ~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 336 AGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred CCCcceEEEEEchhHHHHHHHHHH
Confidence 9864 677777654443333433
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=380.71 Aligned_cols=335 Identities=19% Similarity=0.258 Sum_probs=246.3
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh-hCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~ 117 (1604)
..+|+++|.++++.+++ +|+|+++|||+|||+++++++.+.+.... ......++|||+||++|+.|+++.++.+ +
T Consensus 21 ~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~ 100 (434)
T PRK11192 21 YTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHT 100 (434)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccC
Confidence 35689999999999985 89999999999999999998776654221 1223467999999999999998887764 5
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++++..++|+.....+ ......+++|+|+||++|++.+.++.+.+.++++|||||||++... .+...+..+....
T Consensus 101 ~~~v~~~~gg~~~~~~----~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~-~~~~~~~~i~~~~ 175 (434)
T PRK11192 101 HLDIATITGGVAYMNH----AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM-GFAQDIETIAAET 175 (434)
T ss_pred CcEEEEEECCCCHHHH----HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC-CcHHHHHHHHHhC
Confidence 7899999998765432 2223457899999999999999999889999999999999999764 4566666665556
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
....+++++|||+... .+..+...+.. .|..... .+......
T Consensus 176 ~~~~q~~~~SAT~~~~-----------~~~~~~~~~~~----------------~~~~i~~--~~~~~~~~--------- 217 (434)
T PRK11192 176 RWRKQTLLFSATLEGD-----------AVQDFAERLLN----------------DPVEVEA--EPSRRERK--------- 217 (434)
T ss_pred ccccEEEEEEeecCHH-----------HHHHHHHHHcc----------------CCEEEEe--cCCccccc---------
Confidence 6678999999997421 12222222110 0100000 00000000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
T Consensus 218 -------------------------------------------------------------------------------- 217 (434)
T PRK11192 218 -------------------------------------------------------------------------------- 217 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+..... .......|...|..++.. ....++||||+++.++..|+..|..
T Consensus 218 ---------~i~~~~~-----------------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~- 267 (434)
T PRK11192 218 ---------KIHQWYY-----------------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK- 267 (434)
T ss_pred ---------CceEEEE-----------------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh-
Confidence 0000000 000012344555555543 2346899999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.++.+..+||. |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||
T Consensus 268 ---~~~~~~~l~g~------~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 268 ---AGINCCYLEGE------MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred ---CCCCEEEecCC------CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 46889999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCce--EEEEEeccCHHHHHHHHH
Q 000379 518 HNSQ--FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 518 ~gs~--~i~~v~~~~~~~~~~l~~ 539 (1604)
.|.+ .++|++..+......+++
T Consensus 339 ~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CCCCceEEEEecHHHHHHHHHHHH
Confidence 9865 677777655554444443
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=383.03 Aligned_cols=330 Identities=20% Similarity=0.262 Sum_probs=244.8
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
..+|+++|.++++.+++ +++|+.+|||+|||+++++++.+.+. ......++||||||++|+.|+++++..+.
T Consensus 26 ~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~---~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD---PELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhh---hccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 34799999999999985 89999999999999999998876654 22344579999999999999999988753
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++.+..++|+...+.| .......++|||+||+.|++.+.++.+.++++.+||+||||++... .+...+..+....
T Consensus 103 ~i~v~~~~gG~~~~~q----~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~-gf~~di~~Il~~l 177 (629)
T PRK11634 103 GVNVVALYGGQRYDVQ----LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM-GFIEDVETIMAQI 177 (629)
T ss_pred CceEEEEECCcCHHHH----HHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc-ccHHHHHHHHHhC
Confidence 6888999998754432 2233357899999999999999999999999999999999999765 3444444444455
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+...+++++|||.... +..+... +...|....+....... .
T Consensus 178 p~~~q~llfSAT~p~~------------i~~i~~~----------------~l~~~~~i~i~~~~~~~--~--------- 218 (629)
T PRK11634 178 PEGHQTALFSATMPEA------------IRRITRR----------------FMKEPQEVRIQSSVTTR--P--------- 218 (629)
T ss_pred CCCCeEEEEEccCChh------------HHHHHHH----------------HcCCCeEEEccCccccC--C---------
Confidence 6678899999996421 2222211 11111111000000000 0
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
T Consensus 219 -------------------------------------------------------------------------------- 218 (629)
T PRK11634 219 -------------------------------------------------------------------------------- 218 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+... . .......|...|..+|... ...++||||+++..+..|++.|..
T Consensus 219 ---------~i~q~-------~-----------~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~- 267 (629)
T PRK11634 219 ---------DISQS-------Y-----------WTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER- 267 (629)
T ss_pred ---------ceEEE-------E-----------EEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh-
Confidence 00000 0 0000124566666666543 234799999999999999999987
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.++.+..+||+ |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||
T Consensus 268 ---~g~~~~~lhgd------~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGR 338 (629)
T PRK11634 268 ---NGYNSAALNGD------MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338 (629)
T ss_pred ---CCCCEEEeeCC------CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccC
Confidence 47889999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc--eEEEEEeccCHHHHHHHHH
Q 000379 518 HNS--QFILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 518 ~gs--~~i~~v~~~~~~~~~~l~~ 539 (1604)
.|. ..++|+...+....+.+++
T Consensus 339 aGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 339 AGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred CCCcceEEEEechHHHHHHHHHHH
Confidence 995 4778877554443444443
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=373.30 Aligned_cols=335 Identities=22% Similarity=0.256 Sum_probs=239.1
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhh----CCCCeEEEEEecChhhHHHHHHHHHhh-
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVH- 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~- 116 (1604)
...|+++|.++++.+++ +|+|+.++||||||+++++++.+.+..... .....++|||+||++|+.||++.++.+
T Consensus 107 ~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~ 186 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186 (475)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh
Confidence 34689999999999974 899999999999999999987765542111 012457999999999999999988875
Q ss_pred --cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 117 --TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 117 --~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
+++.+..++|+...+. +........++|+|+||++|++.+.++.+.++++++|||||||++.+. .+...+..+.
T Consensus 187 ~~~~~~v~~~~gg~~~~~---~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~l~~i~ 262 (475)
T PRK01297 187 KYTGLNVMTFVGGMDFDK---QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM-GFIPQVRQII 262 (475)
T ss_pred ccCCCEEEEEEccCChHH---HHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhc-ccHHHHHHHH
Confidence 4788888999865432 222222346899999999999999988889999999999999999765 3333334343
Q ss_pred hhcC--CCCcEEEEeccCCCCCCCCCcccHHHHHHHHH-hhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 195 HKSD--NKPKVFGMTASPVVRKGVSSAMDCEGQISELE-STLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 195 ~~~~--~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le-~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
...+ ..++++++|||.... +..+. ..+.. |..... .........
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~~------------~~~~~~~~~~~-----------------~~~v~~--~~~~~~~~~-- 309 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTDD------------VMNLAKQWTTD-----------------PAIVEI--EPENVASDT-- 309 (475)
T ss_pred HhCCCCCCceEEEEEeecCHH------------HHHHHHHhccC-----------------CEEEEe--ccCcCCCCc--
Confidence 3332 346899999995321 11111 11111 100000 000000000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 310 -------------------------------------------------------------------------------- 309 (475)
T PRK01297 310 -------------------------------------------------------------------------------- 309 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
+.... .....+.|...|.+++.. ....++||||+++.+++.++
T Consensus 310 ----------------~~~~~------------------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~ 352 (475)
T PRK01297 310 ----------------VEQHV------------------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIE 352 (475)
T ss_pred ----------------ccEEE------------------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHH
Confidence 00000 000012344445555543 23358999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+.|.. .++.+..+||. |+..+|.+++++|++|++++||||+++++|||||+|++||+||.|.|..+|+||
T Consensus 353 ~~L~~----~~~~~~~~~g~------~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr 422 (475)
T PRK01297 353 ERLVK----DGINAAQLSGD------VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHR 422 (475)
T ss_pred HHHHH----cCCCEEEEECC------CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHh
Confidence 99987 36788899998 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCce--EEEEEeccCHHHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
+|||||.|+. .++|+.+++......+++.+
T Consensus 423 ~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~ 454 (475)
T PRK01297 423 IGRTGRAGASGVSISFAGEDDAFQLPEIEELL 454 (475)
T ss_pred hCccCCCCCCceEEEEecHHHHHHHHHHHHHh
Confidence 9999999964 67777655444444444443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=376.68 Aligned_cols=331 Identities=20% Similarity=0.240 Sum_probs=238.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh----hCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
....|+++|.++++.++. +|+|+.+|||||||++|++++.+.+.... ......++|||+||++|+.|+++.+..+
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 345799999999999985 89999999999999999998776553111 1112467999999999999999998875
Q ss_pred c---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 117 ~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
. ++++..++|+...+.+ .....++++|||+||+.|++.+... .+.+..+++|||||||++... .+...+..
T Consensus 108 ~~~~~i~v~~l~Gg~~~~~q----~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~-gf~~~i~~ 182 (572)
T PRK04537 108 GADLGLRFALVYGGVDYDKQ----RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDL-GFIKDIRF 182 (572)
T ss_pred hccCCceEEEEECCCCHHHH----HHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhc-chHHHHHH
Confidence 4 6889999998764432 1222346899999999999998764 678899999999999999765 34444444
Q ss_pred HHhhcCC--CCcEEEEeccCCCCCCCCCcccHHHHHHHH-HhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 193 FYHKSDN--KPKVFGMTASPVVRKGVSSAMDCEGQISEL-ESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 193 ~~~~~~~--~p~iLgLTATP~~~~~~~~~~~~~~~i~~L-e~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
++...+. ..+++++|||.... +..+ ...++ .|....+... ......
T Consensus 183 il~~lp~~~~~q~ll~SATl~~~------------v~~l~~~~l~-----------------~p~~i~v~~~--~~~~~~ 231 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSHR------------VLELAYEHMN-----------------EPEKLVVETE--TITAAR 231 (572)
T ss_pred HHHhcccccCceEEEEeCCccHH------------HHHHHHHHhc-----------------CCcEEEeccc--cccccc
Confidence 4443332 56899999996421 1111 11111 1110000000 000000
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
T Consensus 232 -------------------------------------------------------------------------------- 231 (572)
T PRK04537 232 -------------------------------------------------------------------------------- 231 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHH
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKV 429 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~ 429 (1604)
+...+ .......|+..|..++.. ....++||||+++..++.
T Consensus 232 ------------------i~q~~------------------~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~ 272 (572)
T PRK04537 232 ------------------VRQRI------------------YFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVER 272 (572)
T ss_pred ------------------eeEEE------------------EecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHH
Confidence 00000 000012344555555543 234589999999999999
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHH
Q 000379 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1604)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syi 509 (1604)
|++.|.. .++.+..+||. |++.+|.+++++|++|+++|||||+++++|||+|+|++||+||.|.+..+|+
T Consensus 273 l~~~L~~----~g~~v~~lhg~------l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 273 VARTLER----HGYRVGVLSGD------VPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred HHHHHHH----cCCCEEEEeCC------CCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 9999987 36889999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCce--EEEEEeccCHHHHHHH
Q 000379 510 QSRGRARQHNSQ--FILMLERGNLKQRNKL 537 (1604)
Q Consensus 510 Qr~GRA~R~gs~--~i~~v~~~~~~~~~~l 537 (1604)
||+||++|.|.. .++|+.+.+......+
T Consensus 343 qRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 343 HRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred hhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 999999999864 7777765444333333
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=337.88 Aligned_cols=337 Identities=24% Similarity=0.312 Sum_probs=251.3
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hc
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~ 117 (1604)
....|.|+|...++.++ +++++.++.||||||.++++++.+-+-.....-+-.+|||||||++|+.|.+.+.++ ++
T Consensus 200 Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 45679999999999775 899999999999999999999887554222233446899999999999999888765 67
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++.++++.||.++..+ -..+...+||+|+||++|.+++++. .++++++.++|+|||+++... .|..-|.++...
T Consensus 280 ~I~~~L~vGGL~lk~Q----E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~l 354 (691)
T KOG0338|consen 280 DITVGLAVGGLDLKAQ----EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRL 354 (691)
T ss_pred cceeeeeecCccHHHH----HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHh
Confidence 8999999999887653 2334458999999999999999874 678999999999999999875 788899999888
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
++...+.+++|||. .+.+.+|-++ ...+|. .++.++..-....
T Consensus 355 cpk~RQTmLFSATM------------teeVkdL~sl----------------SL~kPv--rifvd~~~~~a~~------- 397 (691)
T KOG0338|consen 355 CPKNRQTMLFSATM------------TEEVKDLASL----------------SLNKPV--RIFVDPNKDTAPK------- 397 (691)
T ss_pred ccccccceeehhhh------------HHHHHHHHHh----------------hcCCCe--EEEeCCccccchh-------
Confidence 88899999999994 3455655543 112221 1111211100000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
|.+
T Consensus 398 ---------------------------------LtQ-------------------------------------------- 400 (691)
T KOG0338|consen 398 ---------------------------------LTQ-------------------------------------------- 400 (691)
T ss_pred ---------------------------------hhH--------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHH-hhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
+|+ + +. +.....+-..|..++. .| ..++||||.++..|..|.-+|-
T Consensus 401 --EFi----R-IR----------------------~~re~dRea~l~~l~~rtf----~~~~ivFv~tKk~AHRl~IllG 447 (691)
T KOG0338|consen 401 --EFI----R-IR----------------------PKREGDREAMLASLITRTF----QDRTIVFVRTKKQAHRLRILLG 447 (691)
T ss_pred --HHh----e-ec----------------------cccccccHHHHHHHHHHhc----ccceEEEEehHHHHHHHHHHHH
Confidence 000 0 00 0000111122222222 22 2479999999999998866553
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
- -+++++-+||+ +++.+|.+.+++|+++++++||||+|+++||||+.+..||||++|.+...|+||+||+
T Consensus 448 L----lgl~agElHGs------LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 448 L----LGLKAGELHGS------LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred H----hhchhhhhccc------ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 3 57899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 516 RQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 516 ~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
.|+|. ..+.|+..++ +..+..+++.
T Consensus 518 ARAGRaGrsVtlvgE~d---RkllK~iik~ 544 (691)
T KOG0338|consen 518 ARAGRAGRSVTLVGESD---RKLLKEIIKS 544 (691)
T ss_pred hhcccCcceEEEecccc---HHHHHHHHhh
Confidence 99985 4788887663 3444444433
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=366.48 Aligned_cols=332 Identities=20% Similarity=0.276 Sum_probs=239.7
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---C
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~ 118 (1604)
...|+++|.++++.++ ++|+|+++|||+|||++|++++.+.+. ....+.++|||+|+++|+.|+.+.++... +
T Consensus 48 ~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~---~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID---YDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhc---CCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 3469999999999997 589999999999999999998877654 22345679999999999999999888764 4
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
..+..++|+.... +.|.....+.+|+|+||+.|.+.+.++...++++++||+||||++... .+...+.+.+...+
T Consensus 125 ~~~~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~-~~~~~~~~i~~~~~ 199 (401)
T PTZ00424 125 VRCHACVGGTVVR----DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR-GFKGQIYDVFKKLP 199 (401)
T ss_pred ceEEEEECCcCHH----HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc-chHHHHHHHHhhCC
Confidence 5667777765432 234555567899999999999999998889999999999999999765 34444444555566
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~ 278 (1604)
..++++++|||+... +..+... +...|....+....... .. +.
T Consensus 200 ~~~~~i~~SAT~~~~------------~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~----~~--- 242 (401)
T PTZ00424 200 PDVQVALFSATMPNE------------ILELTTK----------------FMRDPKRILVKKDELTL--EG----IR--- 242 (401)
T ss_pred CCcEEEEEEecCCHH------------HHHHHHH----------------HcCCCEEEEeCCCCccc--CC----ce---
Confidence 778999999996421 1111111 11111110000000000 00 00
Q ss_pred hhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHH
Q 000379 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1604)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1604)
..+...
T Consensus 243 ---------------~~~~~~----------------------------------------------------------- 248 (401)
T PTZ00424 243 ---------------QFYVAV----------------------------------------------------------- 248 (401)
T ss_pred ---------------EEEEec-----------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCC
Q 000379 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1604)
Q Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~ 438 (1604)
.....+...+..++.. ....++||||+++..++.+.+.|..
T Consensus 249 ----------------------------------~~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~-- 289 (401)
T PTZ00424 249 ----------------------------------EKEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE-- 289 (401)
T ss_pred ----------------------------------ChHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH--
Confidence 0000122222333322 1234799999999999999999987
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhccc
Q 000379 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1604)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~ 518 (1604)
.++.+..+||. |+.++|..++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.
T Consensus 290 --~~~~~~~~h~~------~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 290 --RDFTVSCMHGD------MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred --CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 36789999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cce--EEEEEeccCHHHHHHHHHH
Q 000379 519 NSQ--FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 519 gs~--~i~~v~~~~~~~~~~l~~~ 540 (1604)
|.. +++|+++.+......+++.
T Consensus 362 g~~G~~i~l~~~~~~~~~~~~e~~ 385 (401)
T PTZ00424 362 GRKGVAINFVTPDDIEQLKEIERH 385 (401)
T ss_pred CCCceEEEEEcHHHHHHHHHHHHH
Confidence 854 7778876655554555443
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=323.36 Aligned_cols=341 Identities=19% Similarity=0.249 Sum_probs=261.0
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---h
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~ 116 (1604)
-...+|.|.|..++++++ ++|+|-++.||||||.++.++|.+-+. ..+.+--++|+.||++|+.|.++.|.. .
T Consensus 25 l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLs---edP~giFalvlTPTrELA~QiaEQF~alGk~ 101 (442)
T KOG0340|consen 25 LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLS---EDPYGIFALVLTPTRELALQIAEQFIALGKL 101 (442)
T ss_pred hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhc---cCCCcceEEEecchHHHHHHHHHHHHHhccc
Confidence 356789999999999998 599999999999999999999887664 334455689999999999999999875 3
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
.++++.+++|+++.-..+ ..+...++|+|+||+++-+.+... .+.+.++.++|+|||+++... .|..++..
T Consensus 102 l~lK~~vivGG~d~i~qa----~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~-~f~d~L~~ 176 (442)
T KOG0340|consen 102 LNLKVSVIVGGTDMIMQA----AILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG-CFPDILEG 176 (442)
T ss_pred ccceEEEEEccHHHhhhh----hhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc-chhhHHhh
Confidence 478999999998654322 344568999999999999988765 456788999999999999865 78888887
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
.....+...+.+.+|||... .++.|.. ..+ .++ ....+......+
T Consensus 177 i~e~lP~~RQtLlfSATitd------------~i~ql~~---~~i-------------~k~--~a~~~e~~~~vs----- 221 (442)
T KOG0340|consen 177 IEECLPKPRQTLLFSATITD------------TIKQLFG---CPI-------------TKS--IAFELEVIDGVS----- 221 (442)
T ss_pred hhccCCCccceEEEEeehhh------------HHHHhhc---CCc-------------ccc--cceEEeccCCCC-----
Confidence 77666666689999999532 2232221 100 000 000111000000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
....|.
T Consensus 222 -----------tvetL~--------------------------------------------------------------- 227 (442)
T KOG0340|consen 222 -----------TVETLY--------------------------------------------------------------- 227 (442)
T ss_pred -----------chhhhh---------------------------------------------------------------
Confidence 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
..|+ .-....|-..|+.+|..|....+..++|||++-.+++.|+.
T Consensus 228 -----q~yI------------------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~ 272 (442)
T KOG0340|consen 228 -----QGYI------------------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSM 272 (442)
T ss_pred -----hhee------------------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHH
Confidence 0000 00113455677888888875567789999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHh
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~ 512 (1604)
.|+.+ .+++..+||. |++++|...+.+||++..++||||+|+++|+|||.+++|||||.|.++..||||+
T Consensus 273 ~l~~l----e~r~~~lHs~------m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRv 342 (442)
T KOG0340|consen 273 TLKNL----EVRVVSLHSQ------MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRV 342 (442)
T ss_pred HHhhh----ceeeeehhhc------chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhh
Confidence 99885 6889999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCce--EEEEEeccCHHHHHHHHHHHHH
Q 000379 513 GRARQHNSQ--FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 513 GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
||+.|+|.. .+.++...+.+-...+++.+.+
T Consensus 343 GRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 343 GRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred cchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 999888854 7888888888877777776654
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=365.46 Aligned_cols=339 Identities=22% Similarity=0.274 Sum_probs=257.4
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeE-EEEEecChhhHHHHHHHHHhh--
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKL-IIFLAPTVHLVHQQYDVIRVH-- 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~-vl~LvPt~~Lv~Q~~~~i~~~-- 116 (1604)
.....|.|+|..+++.++. +|+|+.++||||||+++++++.+.+... ...... +|||+||++|+.|.+++++.+
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--VERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--cccCCCceEEECCCHHHHHHHHHHHHHHHh
Confidence 3466899999999999985 9999999999999999999888775421 111112 899999999999999998875
Q ss_pred -c-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHH
Q 000379 117 -T-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 117 -~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
. ++++..++|+.+..... ...-.+++|||+||++|++++.++.+.++.+.++|+|||+++.+. .+...+....
T Consensus 125 ~~~~~~~~~i~GG~~~~~q~----~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~-Gf~~~i~~I~ 199 (513)
T COG0513 125 NLGGLRVAVVYGGVSIRKQI----EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM-GFIDDIEKIL 199 (513)
T ss_pred hcCCccEEEEECCCCHHHHH----HHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcC-CCHHHHHHHH
Confidence 4 57899999998765432 222236999999999999999999999999999999999999987 6666666666
Q ss_pred hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhh
Q 000379 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKL 274 (1604)
Q Consensus 195 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~ 274 (1604)
...+...+++.+|||... .+..|...+ ...|....+.-. ...
T Consensus 200 ~~~p~~~qtllfSAT~~~------------~i~~l~~~~----------------l~~p~~i~v~~~-~~~--------- 241 (513)
T COG0513 200 KALPPDRQTLLFSATMPD------------DIRELARRY----------------LNDPVEIEVSVE-KLE--------- 241 (513)
T ss_pred HhCCcccEEEEEecCCCH------------HHHHHHHHH----------------ccCCcEEEEccc-ccc---------
Confidence 666667899999999542 233333221 112221111100 000
Q ss_pred hhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 000379 275 EVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSS 354 (1604)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1604)
T Consensus 242 -------------------------------------------------------------------------------- 241 (513)
T COG0513 242 -------------------------------------------------------------------------------- 241 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHH
Q 000379 355 LQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1604)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L 434 (1604)
.....+.+... .. .....|+..|..++..... .++||||+++..++.|...|
T Consensus 242 --------~~~~~i~q~~~-------~v----------~~~~~k~~~L~~ll~~~~~---~~~IVF~~tk~~~~~l~~~l 293 (513)
T COG0513 242 --------RTLKKIKQFYL-------EV----------ESEEEKLELLLKLLKDEDE---GRVIVFVRTKRLVEELAESL 293 (513)
T ss_pred --------ccccCceEEEE-------Ee----------CCHHHHHHHHHHHHhcCCC---CeEEEEeCcHHHHHHHHHHH
Confidence 00000000000 00 0001488888888876542 37999999999999999999
Q ss_pred hhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhh
Q 000379 435 KKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1604)
Q Consensus 435 ~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GR 514 (1604)
.. .++++..+||+ |++++|..++++|++|+++|||||+|+++|||||++++||+||+|.+...|+||+||
T Consensus 294 ~~----~g~~~~~lhG~------l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGR 363 (513)
T COG0513 294 RK----RGFKVAALHGD------LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGR 363 (513)
T ss_pred HH----CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCc
Confidence 88 47999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCce--EEEEEecc-CHHHHHHHHHHHH
Q 000379 515 ARQHNSQ--FILMLERG-NLKQRNKLFDIIR 542 (1604)
Q Consensus 515 A~R~gs~--~i~~v~~~-~~~~~~~l~~~~~ 542 (1604)
+||.|.+ .+.|+.+. +......+++.+.
T Consensus 364 TgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~ 394 (513)
T COG0513 364 TGRAGRKGVAISFVTEEEEVKKLKRIEKRLE 394 (513)
T ss_pred cccCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 9999964 78888753 5555566665543
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=309.51 Aligned_cols=332 Identities=22% Similarity=0.289 Sum_probs=251.8
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~~ 119 (1604)
-+|...|..++..++ ++|+|+.+..|+|||..+..-+...+. -..+.-.+++|.||++|+.|..+.+... .++
T Consensus 48 ekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d---~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv 124 (400)
T KOG0328|consen 48 EKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD---ISVRETQALILSPTRELAVQIQKVILALGDYMNV 124 (400)
T ss_pred CCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc---cccceeeEEEecChHHHHHHHHHHHHHhcccccc
Confidence 468999999999887 599999999999999866543322221 2234456999999999999999998864 578
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
++..+.|+.+...-- ++.--+.+|+.+||++.+++++++.+.-..+.++|+|||+.+.+. .+...+-..|...++
T Consensus 125 q~hacigg~n~gedi----kkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~ 199 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDI----KKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNK-GFKEQIYDIYRYLPP 199 (400)
T ss_pred eEEEEecCCccchhh----hhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHh-hHHHHHHHHHHhCCC
Confidence 999999998866421 122247899999999999999999999999999999999999876 666666667777888
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..+++.+|||... .+.+ ....|.+.|....+.-+....
T Consensus 200 ~~Qvv~~SATlp~------------eile----------------mt~kfmtdpvrilvkrdeltl-------------- 237 (400)
T KOG0328|consen 200 GAQVVLVSATLPH------------EILE----------------MTEKFMTDPVRILVKRDELTL-------------- 237 (400)
T ss_pred CceEEEEeccCcH------------HHHH----------------HHHHhcCCceeEEEecCCCch--------------
Confidence 8999999999541 1111 112333333221111110000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+. .+.
T Consensus 238 ---------------------Eg------------------------------------------------------IKq 242 (400)
T KOG0328|consen 238 ---------------------EG------------------------------------------------------IKQ 242 (400)
T ss_pred ---------------------hh------------------------------------------------------hhh
Confidence 00 000
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
|+ ... .....|+..|.++.... .-.+++|||+++..++.|.+.+..
T Consensus 243 f~-----------v~v-----------------e~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~--- 288 (400)
T KOG0328|consen 243 FF-----------VAV-----------------EKEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE--- 288 (400)
T ss_pred he-----------eee-----------------chhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHh---
Confidence 00 000 01134666676665543 235899999999999999999988
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||+ |.+++|.++++.||+|+.+|||+|+|.++|||+|.+++||+||+|.+...||||+||.||.|
T Consensus 289 -~nftVssmHGD------m~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 289 -ANFTVSSMHGD------MEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred -hCceeeeccCC------cchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 57899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEEEeccCHHHHHHHHHHH
Q 000379 520 SQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 520 s~--~i~~v~~~~~~~~~~l~~~~ 541 (1604)
.+ .|-|+...+.+..+.+++..
T Consensus 362 RkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred CcceEEEEecHHHHHHHHHHHHHH
Confidence 76 67788877777666666554
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=406.53 Aligned_cols=1185 Identities=19% Similarity=0.178 Sum_probs=628.4
Q ss_pred HhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccch
Q 000379 56 VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDS 135 (1604)
Q Consensus 56 ~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~ 135 (1604)
.+..-+++....++-+++++.......+.+........--.+|.|+.+..+.+..+.++..+...+..++|..+.+.|+.
T Consensus 255 ~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~ 334 (1606)
T KOG0701|consen 255 YIHQFEVLRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKS 334 (1606)
T ss_pred hhcccceeeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchh
Confidence 33447899999999999998855433333211112222336899999999999999999988878888999999999999
Q ss_pred hHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC--CCCcEEEEeccCCCC
Q 000379 136 QCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD--NKPKVFGMTASPVVR 213 (1604)
Q Consensus 136 ~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~--~~p~iLgLTATP~~~ 213 (1604)
..|...+....|+..+.+..++.|.+..+.+..+++...++|++....+.|+..+..+.+... ...-++|+|..++.-
T Consensus 335 ~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~ 414 (1606)
T KOG0701|consen 335 FKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSL 414 (1606)
T ss_pred hHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998876543 446778999887765
Q ss_pred CCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCc-cccchhhhhhhhhhhhch---------
Q 000379 214 KGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDA--------- 283 (1604)
Q Consensus 214 ~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~-~~~~l~~~~~~~~~~~~~--------- 283 (1604)
++..........+..|....++.+.....+.++..+++.+....+.++.... .....-.++... ...+.
T Consensus 415 ~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~-~~~d~~~~~~gk~~ 493 (1606)
T KOG0701|consen 415 KNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKI-GELDDCLHPKGKEP 493 (1606)
T ss_pred cChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHh-hhhhhhhcccccch
Confidence 4422222233334555566666555555666777777777766666653211 000000000000 00000
Q ss_pred --hHHHHHHhHhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH-----H
Q 000379 284 --SLSKLQGSQLNCYKD----MDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR-----Q 352 (1604)
Q Consensus 284 --~~~~l~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 352 (1604)
.+..........+.. -+..-......+....+.+....-..|-||....+...+........ +...+ .
T Consensus 494 ~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~-n~~~r~~~~~~ 572 (1606)
T KOG0701|consen 494 KACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER-NFERRKLYPPE 572 (1606)
T ss_pred HHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc-ccccccccCch
Confidence 000000000000000 00000000111112222223333334444443322222111000000 00000 0
Q ss_pred hhHHHHH---------------------HHHHHHHHHhhhcCcc-----chhhcc---ccCCcccccccCCCCHHHHHHH
Q 000379 353 SSLQCKY---------------------FLEEVLHVIGSALPLA-----DKIFLD---FGFDYSKAVDLGYISTKLHELL 403 (1604)
Q Consensus 353 ~~~~~~~---------------------~~~~~~~~l~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~s~K~~~L~ 403 (1604)
....|.. ..-..+......+... ...+.. ..... -........++...|.
T Consensus 573 ~~~~~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~-~~~~~~~~~~~~~~l~ 651 (1606)
T KOG0701|consen 573 DLTYCFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLR-LAKINLEFDPKTAELI 651 (1606)
T ss_pred hhhhhhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhh-hhccccccCCchhhHH
Confidence 0000000 0000000000000000 000000 00000 1111233456888888
Q ss_pred HHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccc
Q 000379 404 QLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1604)
Q Consensus 404 ~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~v 483 (1604)
..+--+....+.++++|+..-.++..+-..+-..+....++...+.+... .+.+....|......|+.+++.++++|+.
T Consensus 652 ~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~rn~~~~~~~~~~v~~~~~pss 730 (1606)
T KOG0701|consen 652 ETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSKDEVRKAKYFDGED-SQDAVGMYRNDDQPQFYVAEVLPLLAPSS 730 (1606)
T ss_pred HHhcccccccccchhhhHHHHHHHHhCcccccCCCChhhhhhhhhccccc-chhhhhhhhcccccceeeeeeeeeccchh
Confidence 87765555567789999888777766555444443333444333333221 12233347788888899999999999999
Q ss_pred cccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCceEEEEEeccCHHHHHHHH------HHHHHHHhhhhccccCCch
Q 000379 484 IEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF------DIIRSERSVTDTALSRDPE 557 (1604)
Q Consensus 484 leeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~v~~~~~~~~~~l~------~~~~~e~~~~~~~~~r~~~ 557 (1604)
+.+|.|+.-|+.|+++|.-.+..+++|++||++..++.+.+++..++......+- +.++.|.......+ .+.
T Consensus 731 ~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~~--h~~ 808 (1606)
T KOG0701|consen 731 LFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLII--HPA 808 (1606)
T ss_pred cCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCCC--CcC
Confidence 9999999999999999999999999999999999999999998876544322211 11222211111111 111
Q ss_pred hhhh-hccccccccceeecCCCceechhhHHHHHHHHHhhCCCCCCCCCcceEEEEecCceEEEEEEccCCCCcceeecC
Q 000379 558 ACFL-KACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGP 636 (1604)
Q Consensus 558 ~~~l-~~~~~~~~~~y~v~~tga~l~~~~a~~~l~~yc~~l~~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~~~~~~~g~ 636 (1604)
...+ ..........|++..||+.++...|..+|.+||+++++..|...++.. ......|.|++.+|..+|+..+.|.
T Consensus 809 ~~s~~~~~~~~p~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1606)
T KOG0701|consen 809 LASLWRRAVCLPEILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEASKS--DKNKDEYSCDLALPKENPVKQVLGK 886 (1606)
T ss_pred cchhhhhhccCcchheeeccccceeeeecccchhhhhhhhccchhhccccccC--CCCccccceeecccCCCchhhhhch
Confidence 1111 111222345688999999999999999999999887777775544432 2234689999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccccccccCCCCCCCCCccccccccccccccccCcccCCCce
Q 000379 637 TSRNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSENNLISKKNESLPGAGTTKRKELHGTTPIRALSGRWGEKCGV 716 (1604)
Q Consensus 637 ~~~~k~~Ak~~aaf~ac~~L~~~g~ld~~L~P~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~w~~~~~~ 716 (1604)
...+.+.++++++++||.+||++|..+|++.|......... + ++.....-..+ ....+.....+.
T Consensus 887 ~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~---~-----------~~~~i~~a~~p-~~~~~~~~~~~~ 951 (1606)
T KOG0701|consen 887 ANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQVL---A-----------KRESISLATRP-ELVSPFIPEPPT 951 (1606)
T ss_pred hhhhhHHHhhhhhhhhhhhhhcccccccccccCccccchhh---h-----------hccccccccCc-ccccccccCCch
Confidence 99999999999999999999999999999998653211000 0 00000000000 000111111111
Q ss_pred EEEEEEEEeeeccccccccceEEeeccccCCcCCCceeeEEeec--ceeEEEEecCcccccCHHHHHHHHHHHHHHHHHh
Q 000379 717 ILHAYKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVS--KTVKATVSSSGQVHLDADQMSKAKCFQELFFNGL 794 (1604)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lf~~~ 794 (1604)
..|.|.....+...+. .+...+.+...- ..+-+.-..+ ..++.+. ..+.+++. .|+..+
T Consensus 952 ~s~~~~n~l~~~~~~~--~~~~s~~~~~~~----~~E~~e~i~n~~~~Fs~~~---~~i~~~~s----------~LLEAl 1012 (1606)
T KOG0701|consen 952 TSHLISNRLSPSSPSN--SDLNSLLPNKRS----DWEAVEKILNFRYVFSISL---ASIALSTS----------LLLEAL 1012 (1606)
T ss_pred hhhhhhhhcCccCCCC--CCcccccccccc----cccccccccccceeccccc---cccccchh----------HHHHHh
Confidence 1222221111110000 011111110000 0000000000 0000000 00111111 111100
Q ss_pred hhhchhcccCCCCcchhhcccccCCCCCCceEEEEeccccccCCCCCccccccccccccchhhhhhhhccccccccCCCC
Q 000379 795 FGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDGSWRINWSGINPCASVVEFIKEKSFLGAAQCNNNG 874 (1604)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~IDw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1604)
+.. .+. .++..+--. .-+.+.++|..... -++.... . +
T Consensus 1013 -T~~-~~~----------------------~s~s~Erle----~Lgds~Lk~avsr~-----l~L~ypd---~---~--- 1050 (1606)
T KOG0701|consen 1013 -TTS-SCQ----------------------DSFSLERLE----LLGDSLLKLAVSRH-----LFLTYPD---L---D--- 1050 (1606)
T ss_pred -hcC-ccc----------------------cchhHHHHH----hhHHHHHHHHHHHH-----HHHhCCc---c---c---
Confidence 000 000 000000000 00011222221110 0000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCcceeccCCCcCcccccCcEEEeccCCc-eEEEEEe---cCCCCC--CCCCCCC--CCCCCch
Q 000379 875 GNSSPCRTSPCKTGCHGKDVIHLANGSVDAKNLKDMVVLAIHTGR-IYSIVEI---VNNSSA--ESPFDGN--TDDDSKT 946 (1604)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vV~~~~~~~-~Y~v~~i---~~d~~p--~spf~~~--~~~~~~t 946 (1604)
.+...+.++.-++.+. ...+....|. -|+..++ ...+-| .+.++.. ....--+
T Consensus 1051 ----------------Egqls~lr~~~~~~~n---l~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~ 1111 (1606)
T KOG0701|consen 1051 ----------------EGQLSRLRDVNVSNDN---LARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQN 1111 (1606)
T ss_pred ----------------chhHHHHHHhcccccc---hhhhhhcccchhhcccccccccccccccccccccccccccccccc
Confidence 0000000000000000 0000000000 0000000 000000 0011100 0001123
Q ss_pred HHHHHhhhccccccCCCCceEEeeccCCccccccccCCCCCCCCCCCCCCCCCCC-CceeeeCccccee-----ecccHH
Q 000379 947 FVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKP-QMHVHMPPELLVR-----VDVPIS 1020 (1604)
Q Consensus 947 y~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~pel~~~-----~~ip~~ 1020 (1604)
|.+|+....++ +.+..... ...+....+. ...+.+++.++.+ -.+-++
T Consensus 1112 ~~~~~e~~e~~-------~df~e~~~-------------------~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD 1165 (1606)
T KOG0701|consen 1112 YILYKELDEKI-------KDFQEAME-------------------KEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVD 1165 (1606)
T ss_pred cccccchhhhh-------hHHHHhhh-------------------ccCCcccccccccceecCCCHHHHHHHHHHhhhhh
Confidence 33322211100 00000000 0000000000 0111122222111 123334
Q ss_pred HHHHHhhcHHHHHHHHHHHhHHHH---------------------------HHHHhcccCCCCCChHHHHHhhccCCCCC
Q 000379 1021 VVKSLYLLPSVMQRLESLMLASQL---------------------------REEINCHSRNFHIPSSLILEALTTLGCCE 1073 (1604)
Q Consensus 1021 ~~~~~~~lPsi~~ri~~~l~a~~l---------------------------~~~l~~~~~~~~~~~~lll~AlT~~s~~~ 1073 (1604)
.-..+.+.+.+.+.|.-..+..+. .+.+++.|. .....++.+|++|++...
T Consensus 1166 ~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~--~~~~~l~~~~~~~~s~~~ 1243 (1606)
T KOG0701|consen 1166 GGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFK--FLEAALLVQAFIHCSLRA 1243 (1606)
T ss_pred ccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccch--hhhhhcchhhcccccccc
Confidence 444445556666666543333322 222233110 123578899999998743
Q ss_pred -CCC-cchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhc--hHHHHHHHHhCCCccccccccCCCCCccCCCc
Q 000379 1074 -SFS-MERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC--NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQ 1149 (1604)
Q Consensus 1074 -~~n-~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~--N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~ 1149 (1604)
+.+ +||++|+||++|++.++.+.|..+.....|+++..|..-++ |.+++..+....|+-++++.
T Consensus 1244 ~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~------------ 1311 (1606)
T KOG0701|consen 1244 EGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQ------------ 1311 (1606)
T ss_pred cccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhh------------
Confidence 334 89999999999999999999999999999999999999999 77777777766666666543
Q ss_pred cCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHHHHHHHHhCCccc
Q 000379 1150 LSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWLGIDAD 1229 (1604)
Q Consensus 1150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~~~~~lg~~~~ 1229 (1604)
+.+.+|.++|++|++||++...+|...++.+|+|.+....
T Consensus 1312 ----------------------------------------s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~ 1351 (1606)
T KOG0701|consen 1312 ----------------------------------------SSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLD 1351 (1606)
T ss_pred ----------------------------------------ccCccchHHHHHHHhhhhhhhccCCCcccccccccccccc
Confidence 2367899999999999999999999999998887766544
Q ss_pred ccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCCCCC---CCchH-------------------
Q 000379 1230 LEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQE---FYCYQ------------------- 1287 (1604)
Q Consensus 1230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~---~~~ye------------------- 1287 (1604)
+..+..... ..... -....+..+|+.+||.|.++.++.+|+||.||.. ..|||
T Consensus 1352 i~es~~~~~----~~~~~-~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~ 1426 (1606)
T KOG0701|consen 1352 IPESIASPD----SIDEL-RQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLY 1426 (1606)
T ss_pred ccccccccc----hhHHH-HHHHHHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhccc
Confidence 433211100 00000 0112377889999999999999999999999976 67888
Q ss_pred -------------------------------HHHHHhcccChHHHHHHHHHHHcCCC--CCCCCCCCCCCCCCchhhHHH
Q 000379 1288 -------------------------------NLYKHLQHCSTLLLSQITEYVKSFPK--PGETTDSGPSMKAPKALGDLL 1334 (1604)
Q Consensus 1288 -------------------------------~L~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~k~l~D~~ 1334 (1604)
.+++++.+.++++...|..+...... .....++.+.+..||++||++
T Consensus 1427 ~~~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~ 1506 (1606)
T KOG0701|consen 1427 EDPRQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIF 1506 (1606)
T ss_pred ccccccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhh
Confidence 33444444444444444444433111 111224567799999999999
Q ss_pred HHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHhcCCcceeeeeeeCceEEEEEEEEEcCeEEEE
Q 000379 1335 ESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVG 1414 (1604)
Q Consensus 1335 Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~~~~~v~v~v~g~~~~~ 1414 (1604)
|++.||||+|+|...+.+..-+.+........+....||++.+...+.+ ..+++..+ +.|.+.+. -..
T Consensus 1507 esiagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k---------~~d~~~~~--~tv~~~~~-~~~ 1574 (1606)
T KOG0701|consen 1507 ESIAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEK---------VADAGKVR--VTVDVFNK-EVF 1574 (1606)
T ss_pred hcccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhh---------hhhccceE--EEEEeccc-chh
Confidence 9999999999996555544444333333333344445555555443332 11222223 33444443 345
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhhhhh
Q 000379 1415 EGQERSRKAAKGKAASQLLKKLEVCE 1440 (1604)
Q Consensus 1415 ~g~g~skk~Ak~~AA~~AL~~L~~~~ 1440 (1604)
.|.|.+++.||..|++.|++.|...+
T Consensus 1575 ~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1575 AGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred hhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 79999999999999999999998743
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=325.55 Aligned_cols=93 Identities=31% Similarity=0.449 Sum_probs=86.9
Q ss_pred HHHHHHHHhcccCCCCCChHHHHHhhccCCCCCC----CCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhh
Q 000379 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCES----FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAV 1116 (1604)
Q Consensus 1041 a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~----~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v 1116 (1604)
...|.+.+++.|.| +.++.+||||+|+... .|||||||||||||.++++.+||.+||+.+||.||.+|+.+|
T Consensus 8 ~~~l~~~lg~~f~~----~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV 83 (235)
T COG0571 8 LEALEKKLGYTFKD----KELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV 83 (235)
T ss_pred HHHHHHHhCCCcCC----HHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35677889999998 8999999999999754 489999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCccccccc
Q 000379 1117 CNSTLHKLGTDRKLQGYIRDS 1137 (1604)
Q Consensus 1117 ~N~~L~~~a~~~gl~~~i~~~ 1137 (1604)
|+..|+.+|+.+||+.||+..
T Consensus 84 ~~~~La~ia~~l~l~~~l~lg 104 (235)
T COG0571 84 SEESLAEIARELGLGDYLRLG 104 (235)
T ss_pred HHHHHHHHHHHhCccchhhcc
Confidence 999999999999999999865
|
|
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=325.13 Aligned_cols=385 Identities=23% Similarity=0.270 Sum_probs=297.6
Q ss_pred CceeeeCcccceeecccHHHHHHHhhcHHHHHHHHHHHhHHHHHHHHhcccCCCCCChHHHHHhhccCCCCCC-------
Q 000379 1002 QMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCES------- 1074 (1604)
Q Consensus 1002 ~~~~~L~pel~~~~~ip~~~~~~~~~lPsi~~ri~~~l~a~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~------- 1074 (1604)
+..+.++.+-+..++|-.++.+.++++|...|+|....-.+.|.+.|+|.|.+ .-++.-||||||+...
T Consensus 4 ~~~~~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~----r~~~~lal~h~s~~~~~Gt~~dh 79 (533)
T KOG1817|consen 4 NVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQD----RCLLQLALTHPSHKLNYGTNPDH 79 (533)
T ss_pred ceeEeeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecc----hHHHHHHhcCchHHhhCCCCchh
Confidence 34556777778889999999999999999999999999999999999999998 8899999999986211
Q ss_pred --------------------------------------------------CCcchhhhhhhhHHHHHHHHHHHhhCCCCC
Q 000379 1075 --------------------------------------------------FSMERLELLGDSVLKYAVSCHLFLTYPKKH 1104 (1604)
Q Consensus 1075 --------------------------------------------------~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~ 1104 (1604)
..+||||||||++..+++|.++|..+|...
T Consensus 80 ~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~ 159 (533)
T KOG1817|consen 80 AKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLE 159 (533)
T ss_pred hhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHcccccc
Confidence 058999999999999999999999999999
Q ss_pred cchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCc
Q 000379 1105 EGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKP 1184 (1604)
Q Consensus 1105 eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1184 (1604)
||.|-..|..+|.|.+|+.+++++.++.|+.-.. |+.
T Consensus 160 eggLatyrta~vqnr~la~lakklrkd~fl~yah---------g~d---------------------------------- 196 (533)
T KOG1817|consen 160 EGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAH---------GYD---------------------------------- 196 (533)
T ss_pred ccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---------Ccc----------------------------------
Confidence 9999999999999999999999999999987542 110
Q ss_pred cCCCccccCCchhHHHHHHHHHHhhhcCChHHHHHHHHHh--CCcccccchhh--h-------hhhhcccccccCCCHHH
Q 000379 1185 CDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL--GIDADLEVSLV--D-------DCITRASLRSYVPRINE 1253 (1604)
Q Consensus 1185 ~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~~~~~l--g~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~ 1253 (1604)
...-.-....+|+||||+|||.|+++|...+....+.. +.+.-....|. + +...+......+|....
T Consensus 197 --l~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp 274 (533)
T KOG1817|consen 197 --LCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLP 274 (533)
T ss_pred --hhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCc
Confidence 00000124679999999999999999988777643322 11111110000 0 11111222233455556
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCC----CCchH----------------HHHHHhcccChHHHHHHHHHHHcCCC
Q 000379 1254 IKDIESKIGYEFTVKFLLQEAITHASVQE----FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPK 1313 (1604)
Q Consensus 1254 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~----~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~ 1313 (1604)
+.++|+++|-.|.+.++|.+|||-+|.+. ..+|| .||.+||+.+||-++.++.-+++-+.
T Consensus 275 ~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNet 354 (533)
T KOG1817|consen 275 LTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNET 354 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHH
Confidence 78999999999999999999999999884 45777 89999999999999998887776221
Q ss_pred CC------------CCCCCC--CCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCC---CCchHH
Q 000379 1314 PG------------ETTDSG--PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLE---LPPLRE 1376 (1604)
Q Consensus 1314 ~~------------~~~~~~--~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~---~~p~~~ 1376 (1604)
.. ...... .....-|.++|+|||+|||+|+|.|. +.+.+|+..++.|.+...+.. .+|++.
T Consensus 355 qakva~~lgf~e~li~n~~~k~~~~lk~K~~ADlfEAfiGaLyvD~~l--e~~~qf~~~l~~Prl~~fi~nq~wndpksk 432 (533)
T KOG1817|consen 355 QAKVADDLGFHEYLITNFDLKDFQNLKLKDYADLFEAFIGALYVDKGL--EYCRQFLRVLFFPRLKEFIRNQDWNDPKSK 432 (533)
T ss_pred HHHHHHHhCCchhhhhCcchhhhhhhhHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHhhhccCcHHH
Confidence 11 000001 12234689999999999999999777 888888887777776543332 489999
Q ss_pred HHHHHHhcCCc------ce-eeeeee-Cce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1377 LIELCDSLGYF------VK-ENCTLK-GEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1377 L~e~~~~~~~~------~~-~~~~~~-g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
|+.+|-...+. ++ +++... |+. +.|+|+|+++|+ .+|+|.|+|.|.|+.+||++||+.++.
T Consensus 433 Lqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gk-rlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 433 LQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGK-RLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred HHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCE-EEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 99999876653 33 344444 443 679999999995 999999999999999999999999985
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=335.81 Aligned_cols=212 Identities=27% Similarity=0.355 Sum_probs=179.8
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCCCCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHH
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L 1121 (1604)
..|+++|+|.|.| +.||.+||||+|+.. .||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|
T Consensus 4 ~~LEkrLGY~Fkn----~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 4 SQLESRLRYEFRN----AELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHhCCCcCC----HHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 4678899999988 899999999999865 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHH
Q 000379 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201 (1604)
Q Consensus 1122 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvv 1201 (1604)
+.+|+++||.+||+... +.
T Consensus 79 A~IAr~LGL~d~Lrlg~---------gE---------------------------------------------------- 97 (467)
T PRK14718 79 YEIAQALNISDGLRLGE---------GE---------------------------------------------------- 97 (467)
T ss_pred HHHHHHcCchHHHhhCC---------cc----------------------------------------------------
Confidence 99999999999998541 00
Q ss_pred HHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCCCC
Q 000379 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281 (1604)
Q Consensus 1202 EAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~ 1281 (1604)
T Consensus 98 -------------------------------------------------------------------------------- 97 (467)
T PRK14718 98 -------------------------------------------------------------------------------- 97 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhc
Q 000379 1282 EFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361 (1604)
Q Consensus 1282 ~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~ 1361 (1604)
....+...+++|+|+|||||||||+|+|+ +.++.|+..++.
T Consensus 98 -------------------------------------~~sgG~~~~sILADvFEALIGAIYLDsG~--e~a~~fI~~ll~ 138 (467)
T PRK14718 98 -------------------------------------LRSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYV 138 (467)
T ss_pred -------------------------------------cccCCCCChhHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHH
Confidence 00001236788888888888888888887 788888888887
Q ss_pred cccCC---CCCCCCchHHHHHHHHhcCCcceeee--eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000379 1362 PIVTP---DKLELPPLRELIELCDSLGYFVKENC--TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434 (1604)
Q Consensus 1362 ~~i~~---~~~~~~p~~~L~e~~~~~~~~~~~~~--~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1434 (1604)
+.++. ....+|||+.||||||+++...|.|. ...|+. +.|+|.|+++|..+.+.|.|.|||+|++.||+.||+
T Consensus 139 p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~ 218 (467)
T PRK14718 139 PILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218 (467)
T ss_pred HHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHH
Confidence 77643 23457999999999999998877443 345665 789999999997677999999999999999999999
Q ss_pred Hhhh
Q 000379 1435 KLEV 1438 (1604)
Q Consensus 1435 ~L~~ 1438 (1604)
.|..
T Consensus 219 kL~~ 222 (467)
T PRK14718 219 EVTA 222 (467)
T ss_pred Hhcc
Confidence 9975
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=324.76 Aligned_cols=212 Identities=24% Similarity=0.267 Sum_probs=170.3
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCCC--CCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchH
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCE--SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~--~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~ 1119 (1604)
..|++.|+|.|.| +.++.+||||+|+.. ..||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.
T Consensus 13 ~~le~~lgy~F~~----~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 13 SILEERTGHRFAN----KERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHHCCCCCC----HHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 4578889999988 899999999999864 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHH
Q 000379 1120 TLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIAD 1199 (1604)
Q Consensus 1120 ~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lAD 1199 (1604)
+|+.+|.++||++||+..+ +.. .
T Consensus 89 ~La~ia~~lgL~~~i~~~~---------~~~-----------------------------------~------------- 111 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTGS---------DVK-----------------------------------K------------- 111 (235)
T ss_pred HHHHHHHHCCcHHHhccCc---------chh-----------------------------------h-------------
Confidence 9999999999999998542 000 0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCC
Q 000379 1200 CAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHAS 1279 (1604)
Q Consensus 1200 vvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S 1279 (1604)
T Consensus 112 -------------------------------------------------------------------------------- 111 (235)
T PRK12371 112 -------------------------------------------------------------------------------- 111 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhh
Q 000379 1280 VQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPI 1359 (1604)
Q Consensus 1280 ~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~ 1359 (1604)
..+...+++++|+|||+|||||+|+|+ +.+++|+..+
T Consensus 112 -----------------------------------------~~~~~~~~ilad~~EAliGAiylD~G~--~~a~~~i~~~ 148 (235)
T PRK12371 112 -----------------------------------------LTGKRLLNVRADVVEALIAAIYLDGGL--EAARPFIQRY 148 (235)
T ss_pred -----------------------------------------cCCcccchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 000123456666666666666666665 6666666666
Q ss_pred hccccCC-CCCCCCchHHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000379 1360 LSPIVTP-DKLELPPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434 (1604)
Q Consensus 1360 l~~~i~~-~~~~~~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1434 (1604)
+.+.+.. .....|||+.||||||+.+...| +.+ ...|+. +.|+|.|+++|. ..++|.|.|||+|++.||++||+
T Consensus 149 ~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~-~~~~g~G~sKK~Ae~~AA~~al~ 227 (235)
T PRK12371 149 WQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGF-APETGEGRSKRAAEQVAAEKMLE 227 (235)
T ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHH
Confidence 6665543 23457999999999998776655 333 345665 789999999997 68999999999999999999999
Q ss_pred Hhhh
Q 000379 1435 KLEV 1438 (1604)
Q Consensus 1435 ~L~~ 1438 (1604)
.|..
T Consensus 228 ~~~~ 231 (235)
T PRK12371 228 REGV 231 (235)
T ss_pred Hhhh
Confidence 9865
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=349.32 Aligned_cols=332 Identities=17% Similarity=0.237 Sum_probs=231.0
Q ss_pred CCCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 42 INFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
..+.+|+||.+++.++.+ +++|+++|||+|||++++.++..+ ++++|||||+..|++||.++|.+++
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 357899999999999874 478999999999999999877653 2459999999999999999999987
Q ss_pred C---CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh--------cCcCccceeEEEEeCcccccCCChH
Q 000379 118 D---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--------AFLSLDIVCFIVIDECHHATGNHPY 186 (1604)
Q Consensus 118 ~---~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~ 186 (1604)
. ..+..++|+.... + .....|+|+||+++.+...+ ..+.-..|++||+|||||+... .|
T Consensus 323 ~l~~~~I~~~tg~~k~~------~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~f 392 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER------F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MF 392 (732)
T ss_pred CCCCceEEEEecCcccc------c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HH
Confidence 4 4566666653221 1 12578999999988643221 1233457899999999999643 45
Q ss_pred HHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhh-hhccCCcceeeeeccCCCc
Q 000379 187 TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 187 ~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l-~~~~~~p~e~~~~y~~~~~ 265 (1604)
.+++..+ ..+++|||||||.+.++. +..|...++..++..+-.+.+ ..+..++.-..+...-.
T Consensus 393 r~il~~l-----~a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t-- 456 (732)
T TIGR00603 393 RRVLTIV-----QAHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMT-- 456 (732)
T ss_pred HHHHHhc-----CcCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCC--
Confidence 5555543 457899999999987532 345677778777765433332 23333322111111000
Q ss_pred cccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 345 (1604)
+ +....+ + .. .
T Consensus 457 -----------------~-----------------~~~~~y---l---------------------------~~---~-- 467 (732)
T TIGR00603 457 -----------------P-----------------EFYREY---L---------------------------RE---N-- 467 (732)
T ss_pred -----------------H-----------------HHHHHH---H---------------------------Hh---c--
Confidence 0 000000 0 00 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHH
Q 000379 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ 425 (1604)
.. ... .+.. ....|+..+..++..+. ..+.++||||++..
T Consensus 468 ---------~~-~k~---~l~~--------------------------~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~ 507 (732)
T TIGR00603 468 ---------SR-KRM---LLYV--------------------------MNPNKFRACQFLIRFHE-QRGDKIIVFSDNVF 507 (732)
T ss_pred ---------ch-hhh---HHhh--------------------------hChHHHHHHHHHHHHHh-hcCCeEEEEeCCHH
Confidence 00 000 0000 01357777777776543 45679999999998
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceEEEEccccccccCCCCccEEEEcCCC-C
Q 000379 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDLP-K 503 (1604)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~iLIaT~vleeGIDip~~nlVI~fD~p-~ 503 (1604)
.+..+.+.|. +.+++|. ++..+|..++++|++| .+++||+|+|+.+|||+|++++||+++.| .
T Consensus 508 ~l~~~a~~L~---------~~~I~G~------ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~g 572 (732)
T TIGR00603 508 ALKEYAIKLG---------KPFIYGP------TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYG 572 (732)
T ss_pred HHHHHHHHcC---------CceEECC------CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCC
Confidence 8888877662 3468898 7999999999999975 78999999999999999999999999987 5
Q ss_pred CHHHHHHHhhhhcccCc---------eEEEEEeccCHH
Q 000379 504 TVSSYIQSRGRARQHNS---------QFILMLERGNLK 532 (1604)
Q Consensus 504 s~~syiQr~GRA~R~gs---------~~i~~v~~~~~~ 532 (1604)
|...|+||+||+.|.+. .++.++.+++.+
T Consensus 573 S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 573 SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred CHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999999999873 257788777665
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=331.14 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=178.5
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCCCCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHH
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTL 1121 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L 1121 (1604)
..|++.|+|.|.| ++||.+||||+|+.. .||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|
T Consensus 4 ~~LEk~LGY~Fkn----~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 4 SQLESRLRYEFRN----AELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHhCCCcCC----HHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 4578899999988 899999999999865 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHH
Q 000379 1122 HKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCA 1201 (1604)
Q Consensus 1122 ~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvv 1201 (1604)
+.+|.++||.+||+... +.
T Consensus 79 A~IA~~LgL~~~Lrlg~---------ge---------------------------------------------------- 97 (413)
T PRK12372 79 YEIAQALNISEGLRLGE---------GE---------------------------------------------------- 97 (413)
T ss_pred HHHHHHcCchHhhhcCc---------ch----------------------------------------------------
Confidence 99999999999988431 00
Q ss_pred HHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccCCCC
Q 000379 1202 EALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ 1281 (1604)
Q Consensus 1202 EAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~ 1281 (1604)
T Consensus 98 -------------------------------------------------------------------------------- 97 (413)
T PRK12372 98 -------------------------------------------------------------------------------- 97 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhc
Q 000379 1282 EFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361 (1604)
Q Consensus 1282 ~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~ 1361 (1604)
....+...+++|+|+|||+|||||+|+|+ +.++.|+..++.
T Consensus 98 -------------------------------------~~sgg~~~~kILADvfEALIGAIYLDsG~--e~a~~fV~~ll~ 138 (413)
T PRK12372 98 -------------------------------------LRSGGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKRLYV 138 (413)
T ss_pred -------------------------------------hhcCCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH
Confidence 00001236788888888888888888886 678888888877
Q ss_pred cccCC---CCCCCCchHHHHHHHHhcCCcceeee--eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHH
Q 000379 1362 PIVTP---DKLELPPLRELIELCDSLGYFVKENC--TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434 (1604)
Q Consensus 1362 ~~i~~---~~~~~~p~~~L~e~~~~~~~~~~~~~--~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~ 1434 (1604)
+.++. ....+|||+.||||||+++...|.|. ...|+. ..|+|.|+++|..+.+.|.|.|||+|++.||+.||+
T Consensus 139 p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~ 218 (413)
T PRK12372 139 PILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALD 218 (413)
T ss_pred HHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 76643 23457999999999999998877443 345654 789999999997677899999999999999999999
Q ss_pred Hhhh
Q 000379 1435 KLEV 1438 (1604)
Q Consensus 1435 ~L~~ 1438 (1604)
+|..
T Consensus 219 kL~~ 222 (413)
T PRK12372 219 EVMA 222 (413)
T ss_pred HHhc
Confidence 9985
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=313.52 Aligned_cols=331 Identities=20% Similarity=0.267 Sum_probs=254.5
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH---HHhhcCC
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV---IRVHTDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~---i~~~~~~ 119 (1604)
-.|.|.|.+.++.++ ++|+++-+..|+|||-+++.++.+.+. .....-.++++|||++|+-|.... +.+++++
T Consensus 106 ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid---~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i 182 (459)
T KOG0326|consen 106 EKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID---PKKNVIQAIILVPTRELALQTSQVCKELSKHLGI 182 (459)
T ss_pred CCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC---ccccceeEEEEeecchhhHHHHHHHHHHhcccCe
Confidence 368999999999998 599999999999999999999877664 333445689999999998876555 4557899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
++...+||.+...- ....-+..+++|+||++++++..++.-.+++..++|+|||+.+.+. .+..++..+....+.
T Consensus 183 ~vmvttGGT~lrDD----I~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~-~F~~~~e~li~~lP~ 257 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDD----IMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV-DFQPIVEKLISFLPK 257 (459)
T ss_pred EEEEecCCcccccc----eeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch-hhhhHHHHHHHhCCc
Confidence 99999999875431 1223357899999999999999999999999999999999999876 788899988888899
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
.+++++.|||-... + ..-+.+|..+|-+...
T Consensus 258 ~rQillySATFP~t--------------------------V--k~Fm~~~l~kPy~INL--------------------- 288 (459)
T KOG0326|consen 258 ERQILLYSATFPLT--------------------------V--KGFMDRHLKKPYEINL--------------------- 288 (459)
T ss_pred cceeeEEecccchh--------------------------H--HHHHHHhccCcceeeh---------------------
Confidence 99999999993211 0 0112223333321100
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+++|-+. ...+
T Consensus 289 -----------------------------------------M~eLtl~----------------------------GvtQ 299 (459)
T KOG0326|consen 289 -----------------------------------------MEELTLK----------------------------GVTQ 299 (459)
T ss_pred -----------------------------------------hhhhhhc----------------------------chhh
Confidence 0000000 0000
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
|. .+ -..+.|+..|-.++....- .++||||++...++.|++.+.++
T Consensus 300 yY--------af---------------------V~e~qKvhCLntLfskLqI---NQsIIFCNS~~rVELLAkKITel-- 345 (459)
T KOG0326|consen 300 YY--------AF---------------------VEERQKVHCLNTLFSKLQI---NQSIIFCNSTNRVELLAKKITEL-- 345 (459)
T ss_pred he--------ee---------------------echhhhhhhHHHHHHHhcc---cceEEEeccchHhHHHHHHHHhc--
Confidence 00 00 0125677777777765432 37999999999999999999885
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
++.|.++|.. |.+..|..++.+||+|.|+.||||+.+-+|||+|++|+||+||.|++..+|.||+||+||.|
T Consensus 346 --GyscyyiHak------M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 346 --GYSCYYIHAK------MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 417 (459)
T ss_pred --cchhhHHHHH------HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCC
Confidence 8999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--eEEEEEeccCHHHHHHHHHHHH
Q 000379 520 S--QFILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 520 s--~~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
- -.|-+++-++......+++.+.
T Consensus 418 hlGlAInLityedrf~L~~IE~eLG 442 (459)
T KOG0326|consen 418 HLGLAINLITYEDRFNLYRIEQELG 442 (459)
T ss_pred CcceEEEEEehhhhhhHHHHHHHhc
Confidence 5 3677777554444444554443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=322.49 Aligned_cols=360 Identities=22% Similarity=0.297 Sum_probs=248.9
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh------hCCCCeEEEEEecChhhHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK------SNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~------~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
..-..|.|.|..++...+. +|+|.+++||||||.++++++...+.... ....++.+++|+||++|+.|+.++-
T Consensus 263 ~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3456899999999998874 99999999999999999987766554222 2345677999999999999998886
Q ss_pred Hhh---cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChHH
Q 000379 114 RVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPYT 187 (1604)
Q Consensus 114 ~~~---~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~ 187 (1604)
.++ ++++++.+.|+.+.+...- ..-.+++|+|+||+.|++.|.+.++.+++...+|+|||+++.+- ..+.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f----qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF----QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh----hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHH
Confidence 665 4789999999988765321 23458999999999999999999999999999999999999853 2344
Q ss_pred HHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccc
Q 000379 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 188 ~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
.|+..+ |..+....+.+ .+. -..+-..+. .+ .+|..+..++
T Consensus 419 ~iL~~m----------------Pssn~k~~tde-~~~-~~~~~~~~~----------------~~-----k~yrqT~mft 459 (673)
T KOG0333|consen 419 KILEQM----------------PSSNAKPDTDE-KEG-EERVRKNFS----------------SS-----KKYRQTVMFT 459 (673)
T ss_pred HHHHhC----------------CccccCCCccc-hhh-HHHHHhhcc----------------cc-----cceeEEEEEe
Confidence 444422 32221100000 000 011111111 00 0121111111
Q ss_pred cchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Q 000379 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347 (1604)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 347 (1604)
.+. +..+..+.+.....+..+ ..|. ..
T Consensus 460 atm-----------------------------~p~verlar~ylr~pv~v-----tig~-------------~g------ 486 (673)
T KOG0333|consen 460 ATM-----------------------------PPAVERLARSYLRRPVVV-----TIGS-------------AG------ 486 (673)
T ss_pred cCC-----------------------------ChHHHHHHHHHhhCCeEE-----Eecc-------------CC------
Confidence 111 111111111100000000 0000 00
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHH
Q 000379 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427 (1604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta 427 (1604)
.-...+++ ....-..+.|...|+++|+++. +..+|||||++..|
T Consensus 487 ---------------k~~~rveQ------------------~v~m~~ed~k~kkL~eil~~~~---~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 487 ---------------KPTPRVEQ------------------KVEMVSEDEKRKKLIEILESNF---DPPIIIFVNTKKGA 530 (673)
T ss_pred ---------------CCccchhe------------------EEEEecchHHHHHHHHHHHhCC---CCCEEEEEechhhH
Confidence 00000000 0111234678999999998763 45799999999999
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHH
Q 000379 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507 (1604)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~s 507 (1604)
+.|++.|.+. ++++..+||+ -++++|+.+|..||+|..+|||||+|+++|||||++.+||+||++++...
T Consensus 531 d~lAk~LeK~----g~~~~tlHg~------k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieD 600 (673)
T KOG0333|consen 531 DALAKILEKA----GYKVTTLHGG------KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIED 600 (673)
T ss_pred HHHHHHHhhc----cceEEEeeCC------ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHH
Confidence 9999999984 7999999998 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCc--eEEEEEeccCHHHHHHHHHHHH
Q 000379 508 YIQSRGRARQHNS--QFILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 508 yiQr~GRA~R~gs--~~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
|+||+||+||+|. .++.|++..+..-+..|.+.+.
T Consensus 601 YtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 601 YTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999996 4899998887665555655554
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=346.39 Aligned_cols=318 Identities=17% Similarity=0.265 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
-.+||+|.++++.++ ++|+++++|||+|||+++++++.. ..+.++||+|+++|+.||.+.++. .++.+.
T Consensus 10 ~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------SDGITLVISPLISLMEDQVLQLKA-SGIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEE
Confidence 468999999999987 489999999999999999988653 134589999999999999999984 578888
Q ss_pred EEECCCCCCccchhHHHHh-cCCCcEEEEcHHHHHHHH-HhcCc-CccceeEEEEeCcccccCC-ChHHHHHHHH--Hhh
Q 000379 123 EYYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDAL-RKAFL-SLDIVCFIVIDECHHATGN-HPYTKIMKEF--YHK 196 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~-~~~~~ViV~T~q~Ll~~l-~~~~~-~l~~i~llI~DEaH~~~~~-~~~~~im~~~--~~~ 196 (1604)
.+.|+...+. ....+... ....+|+++||+.+.... ....+ ...++++|||||||++... |.+......+ +..
T Consensus 80 ~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 158 (470)
T TIGR00614 80 FLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQ 158 (470)
T ss_pred EEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHH
Confidence 8877654332 11223332 245899999999875322 11112 5678999999999999754 3444333322 112
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
..+..++++||||+... ....+...++.. .|......++....
T Consensus 159 ~~~~~~~l~lTAT~~~~-----------~~~di~~~l~l~---------------~~~~~~~s~~r~nl----------- 201 (470)
T TIGR00614 159 KFPNVPIMALTATASPS-----------VREDILRQLNLK---------------NPQIFCTSFDRPNL----------- 201 (470)
T ss_pred HcCCCceEEEecCCCHH-----------HHHHHHHHcCCC---------------CCcEEeCCCCCCCc-----------
Confidence 22456799999998532 122333333210 01000000000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
.| ..
T Consensus 202 ------------------~~-~v--------------------------------------------------------- 205 (470)
T TIGR00614 202 ------------------YY-EV--------------------------------------------------------- 205 (470)
T ss_pred ------------------EE-EE---------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
.......+..+.+++... ..+.++||||+++..++.++..|..
T Consensus 206 -----------------------------------~~~~~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~ 248 (470)
T TIGR00614 206 -----------------------------------RRKTPKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQN 248 (470)
T ss_pred -----------------------------------EeCCccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHh
Confidence 000001223334444321 2234679999999999999999987
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+||. |++++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||||
T Consensus 249 ----~g~~~~~~H~~------l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaG 318 (470)
T TIGR00614 249 ----LGIAAGAYHAG------LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAG 318 (470)
T ss_pred ----cCCCeeEeeCC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcC
Confidence 47889999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc--eEEEEEeccCHH
Q 000379 517 QHNS--QFILMLERGNLK 532 (1604)
Q Consensus 517 R~gs--~~i~~v~~~~~~ 532 (1604)
|.|. .+++++...+..
T Consensus 319 R~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 319 RDGLPSECHLFYAPADIN 336 (470)
T ss_pred CCCCCceEEEEechhHHH
Confidence 9985 477777765544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=313.77 Aligned_cols=326 Identities=21% Similarity=0.312 Sum_probs=244.6
Q ss_pred CCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCe--EEEEEecChhhHHHHHHHHHhhc----
Q 000379 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKK--LIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~--~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
..+|.|..+++.+++ +++.|-++||||||+++++++.+.+.......++. -+|||+||++|+.|+.+++..+.
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 468999999999885 99999999999999999999999885444333333 68999999999999999987653
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
++.+..+.||..++. +...+. -++++|+|+||++|.+++.+. .+++..+.+||+|||+++.+- .+..-+..++.
T Consensus 108 ~l~~~l~vGG~~v~~-Di~~fk--ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm-gFe~~~n~ILs 183 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEE-DIKTFK--EEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM-GFEASVNTILS 183 (567)
T ss_pred ccceEEEecCccHHH-HHHHHH--HhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc-cHHHHHHHHHH
Confidence 688999999987765 222222 247899999999999999984 455669999999999999876 66666777777
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
..+...|.=++|||-.. ...+|-.. ....|..+.+.-......++
T Consensus 184 ~LPKQRRTGLFSATq~~------------~v~dL~ra----------------GLRNpv~V~V~~k~~~~tPS------- 228 (567)
T KOG0345|consen 184 FLPKQRRTGLFSATQTQ------------EVEDLARA----------------GLRNPVRVSVKEKSKSATPS------- 228 (567)
T ss_pred hcccccccccccchhhH------------HHHHHHHh----------------hccCceeeeecccccccCch-------
Confidence 77777788888999431 11222111 11111111110000000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
.+.
T Consensus 229 ---------------~L~-------------------------------------------------------------- 231 (567)
T KOG0345|consen 229 ---------------SLA-------------------------------------------------------------- 231 (567)
T ss_pred ---------------hhc--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.+|+ .-.-..|+..|+++|..+ ...+||||..+=..+++...++.
T Consensus 232 --~~Y~------------------------------v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~ 276 (567)
T KOG0345|consen 232 --LEYL------------------------------VCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFS 276 (567)
T ss_pred --ceee------------------------------EecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHH
Confidence 0000 000135888889988763 45699999999999999888887
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
.. +....+..+||. |+++.|..++..|++..-.+|+||+|+++|||||++++||+||+|.++.+|+||.||+
T Consensus 277 ~~--l~~~~i~~iHGK------~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 277 RL--LKKREIFSIHGK------MSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HH--hCCCcEEEecch------hcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 75 356778899999 9999999999999998788999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEEecc
Q 000379 516 RQHNSQ--FILMLERG 529 (1604)
Q Consensus 516 ~R~gs~--~i~~v~~~ 529 (1604)
+|.|.. .++|+.+.
T Consensus 349 aR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNPR 364 (567)
T ss_pred hhccCccceEEEeccc
Confidence 999964 78888763
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=326.17 Aligned_cols=344 Identities=22% Similarity=0.302 Sum_probs=249.7
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhh-----C--CCCeEEEEEecChhhHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKS-----N--GFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~-----~--~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
.....|+|+|+-+++.+.+ ++.+++|+||+|||.+++++|...+..... . +..+.++||+||++||.|.+++
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 3456799999999999974 889999999999999999988776542211 1 1247899999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
.+++. ++++...||+.+.... -.....+++|+|+||+.|.+.+..+.+.|+++.++|+|||+++.+.-.+.--
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q----~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQ----LRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhh----hhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccccc
Confidence 99976 5788889998654432 2334468999999999999999999999999999999999999874233222
Q ss_pred HHHHHhhc----CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCc
Q 000379 190 MKEFYHKS----DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 190 m~~~~~~~----~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 265 (1604)
++...... ....+.+.+|||-... +..+-..+ ...- |
T Consensus 248 Ir~iv~~~~~~~~~~~qt~mFSAtfp~~------------iq~l~~~f----------------l~~~------y----- 288 (482)
T KOG0335|consen 248 IRKIVEQLGMPPKNNRQTLLFSATFPKE------------IQRLAADF----------------LKDN------Y----- 288 (482)
T ss_pred HHHHhcccCCCCccceeEEEEeccCChh------------hhhhHHHH----------------hhcc------c-----
Confidence 33222221 2345667777773210 11100000 0000 0
Q ss_pred cccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 345 (1604)
..
T Consensus 289 -------------------------------i~----------------------------------------------- 290 (482)
T KOG0335|consen 289 -------------------------------IF----------------------------------------------- 290 (482)
T ss_pred -------------------------------eE-----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCC-CC-----cEEEE
Q 000379 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-TQ-----VLCII 419 (1604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~-~~-----~~~II 419 (1604)
....++-....+....+..-....|...|+++|...... .. .+++|
T Consensus 291 ----------------------------laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlv 342 (482)
T KOG0335|consen 291 ----------------------------LAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLV 342 (482)
T ss_pred ----------------------------EEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEE
Confidence 000000000000111111122356777888887633211 22 38999
Q ss_pred EEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEc
Q 000379 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499 (1604)
Q Consensus 420 Fv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~f 499 (1604)
||+++..|..|..+|.. .++++..+||. .++.+|.+.++.||+|.+.+||||+|+++|||||++.+||+|
T Consensus 343 FvEt~~~~d~l~~~l~~----~~~~~~sIhg~------~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 343 FVETKRGADELAAFLSS----NGYPAKSIHGD------RTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred EeeccchhhHHHHHHhc----CCCCceeecch------hhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEe
Confidence 99999999999999988 57889999998 689999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhcccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 500 DLPKTVSSYIQSRGRARQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 500 D~p~s~~syiQr~GRA~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|+|.+..+|+||+||+||.|. ..+.|++..+....+.|.+++.+
T Consensus 413 DmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 413 DMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred ecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 999999999999999999995 57888886666666777777654
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=315.77 Aligned_cols=328 Identities=20% Similarity=0.291 Sum_probs=255.5
Q ss_pred CCCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHH-hhCCCCeEEEEEecChhhHHHHHHHHHh--
Q 000379 40 NSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI-KSNGFKKLIIFLAPTVHLVHQQYDVIRV-- 115 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~-~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-- 115 (1604)
...-..+...|...+..++ ++++|.++-||||||++++.++.+.+... .....+--+|||.||++|+-|.++++.+
T Consensus 86 e~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 86 EAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred hcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 3456789999999999988 59999999999999999999887766532 2334445599999999999999999886
Q ss_pred -hcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCChHHHHHHHH
Q 000379 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1604)
Q Consensus 116 -~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~~ 193 (1604)
+.++..+.+.||..+.. -...+.+.+|+||||++|+..+... .++-+++.+||+|||+++.+- .|...|..+
T Consensus 166 k~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM-GFk~tL~~I 239 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM-GFKKTLNAI 239 (758)
T ss_pred hccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH-hHHHHHHHH
Confidence 56899999999987553 3445668999999999999998764 677889999999999999865 777888877
Q ss_pred HhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh--cCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 194 YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST--LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 194 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~--l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
....+...+.|++|||+..+ ..+|.++ -|..+..+ +-......+.
T Consensus 240 i~~lP~~RQTLLFSATqt~s------------vkdLaRLsL~dP~~vsv------------------he~a~~atP~--- 286 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKS------------VKDLARLSLKDPVYVSV------------------HENAVAATPS--- 286 (758)
T ss_pred HHhCChhheeeeeecccchh------------HHHHHHhhcCCCcEEEE------------------eccccccChh---
Confidence 77788888999999998643 3333332 12111111 1000000000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 287 -------------------------------------------------------------------------------- 286 (758)
T KOG0343|consen 287 -------------------------------------------------------------------------------- 286 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
.+.+... .-....|+..|...+..+. ..+.|||+.+-..+..++
T Consensus 287 ---------------~L~Q~y~------------------~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 287 ---------------NLQQSYV------------------IVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred ---------------hhhheEE------------------EEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHH
Confidence 0000000 0012468888888887754 358999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+.+.++. +++....+||. |+++.|.++..+|-...--||+||+|+++|+|+|++|.||+||.|.++.+||||
T Consensus 331 e~F~rlr--pg~~l~~L~G~------~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHR 402 (758)
T KOG0343|consen 331 EAFCRLR--PGIPLLALHGT------MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHR 402 (758)
T ss_pred HHHHhcC--CCCceeeeccc------hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHH
Confidence 9998863 57889999999 999999999999999889999999999999999999999999999999999999
Q ss_pred hhhhcccCc--eEEEEEeccC
Q 000379 512 RGRARQHNS--QFILMLERGN 530 (1604)
Q Consensus 512 ~GRA~R~gs--~~i~~v~~~~ 530 (1604)
+||+.|.+. +.++|+.+++
T Consensus 403 vGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 403 VGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred hhhhhcccCCCceEEEEcchh
Confidence 999999874 4667776654
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=350.18 Aligned_cols=313 Identities=18% Similarity=0.264 Sum_probs=218.5
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcE
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v 121 (1604)
.-.+|++|.++++.++ ++|+|+.||||+|||++|.+++... .+.+|||+|+++|+.+|...+.. .++++
T Consensus 458 ~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiSLmqDQV~~L~~-~GI~A 527 (1195)
T PLN03137 458 NHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSLIQDQIMNLLQ-ANIPA 527 (1195)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHHHHHHHHHHHHh-CCCeE
Confidence 3478999999999988 5999999999999999999987532 24699999999999988777764 58888
Q ss_pred EEEECCCCCCccchhHHHHh---cCCCcEEEEcHHHHHH--HHHhc---CcCccceeEEEEeCcccccCC-ChHHHHHHH
Q 000379 122 EEYYGAKGVDEWDSQCWQKE---INKNDVLVMTPQILLD--ALRKA---FLSLDIVCFIVIDECHHATGN-HPYTKIMKE 192 (1604)
Q Consensus 122 ~~~~G~~~~~~~~~~~w~~~---~~~~~ViV~T~q~Ll~--~l~~~---~~~l~~i~llI~DEaH~~~~~-~~~~~im~~ 192 (1604)
..+.|+...... ...+... ....+|+++||+.|.. .+.+. ......+.+|||||||++... |.|+...+.
T Consensus 528 a~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 528 ASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 888888764432 1222222 2578999999999852 12211 112345889999999999865 455443332
Q ss_pred H--HhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC---ceeeccchhhhhhccCCcceeeeeccCCCccc
Q 000379 193 F--YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 193 ~--~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
+ +....+..++++||||..... . ..+...|+. .++. ....+|. ..|..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V--------~---eDI~~~L~l~~~~vfr--------~Sf~RpN---L~y~V----- 659 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASV--------K---EDVVQALGLVNCVVFR--------QSFNRPN---LWYSV----- 659 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHH--------H---HHHHHHcCCCCcEEee--------cccCccc---eEEEE-----
Confidence 1 112223467899999964321 1 122222221 0000 0000110 00000
Q ss_pred cchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Q 000379 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347 (1604)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 347 (1604)
...
T Consensus 660 -------------------------------v~k---------------------------------------------- 662 (1195)
T PLN03137 660 -------------------------------VPK---------------------------------------------- 662 (1195)
T ss_pred -------------------------------ecc----------------------------------------------
Confidence 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHH
Q 000379 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAA 427 (1604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta 427 (1604)
....+..+.+++... ..+.++||||.+|..+
T Consensus 663 -----------------------------------------------~kk~le~L~~~I~~~--~~~esgIIYC~SRke~ 693 (1195)
T PLN03137 663 -----------------------------------------------TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDC 693 (1195)
T ss_pred -----------------------------------------------chhHHHHHHHHHHhc--ccCCCceeEeCchhHH
Confidence 000112222333221 1234689999999999
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHH
Q 000379 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSS 507 (1604)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~s 507 (1604)
+.++..|.. .++.+..+||+ |++++|..++++|++|+++|||||+++++|||+|++++||+||+|.++.+
T Consensus 694 E~LAe~L~~----~Gika~~YHAG------Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEs 763 (1195)
T PLN03137 694 EKVAERLQE----FGHKAAFYHGS------MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 763 (1195)
T ss_pred HHHHHHHHH----CCCCeeeeeCC------CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHH
Confidence 999999987 47889999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCc--eEEEEEecc
Q 000379 508 YIQSRGRARQHNS--QFILMLERG 529 (1604)
Q Consensus 508 yiQr~GRA~R~gs--~~i~~v~~~ 529 (1604)
|+||+|||||.|. .+++|+...
T Consensus 764 YyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 764 YHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred HHhhhcccCCCCCCceEEEEecHH
Confidence 9999999999995 477777643
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=353.09 Aligned_cols=333 Identities=18% Similarity=0.252 Sum_probs=224.9
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc--CC
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--DF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--~~ 119 (1604)
...|+++|.++++.++ ++|+|+.+|||||||+++.+++.+.+. ..++.++|||+||++|+.||.+.++.+. ++
T Consensus 34 ~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~----~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA----DDPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh----hCCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 4479999999999998 599999999999999999999877664 1345679999999999999999999864 67
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeCcccccCC--ChHHHHHHHH
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGN--HPYTKIMKEF 193 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~im~~~ 193 (1604)
++..+.|+...+. . .....+++|+|+||+.|...+... ...++++++||+||||.+.+. .....+++.+
T Consensus 110 ~v~~~~Gdt~~~~---r--~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 110 RPATYDGDTPTEE---R--RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEEeCCCCHHH---H--HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888888765321 1 223346899999999986433211 123688999999999999753 1223344333
Q ss_pred Hh---hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccch
Q 000379 194 YH---KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 194 ~~---~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
.. .....|+++++|||.... ....+..++..+..+... ..+........+.+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~------------~~~~~~l~g~~~~~i~~~-----~~~~~~~~~~~~~p~~~~---- 243 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADP------------AAAASRLIGAPVVAVTED-----GSPRGARTVALWEPPLTE---- 243 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCH------------HHHHHHHcCCCeEEECCC-----CCCcCceEEEEecCCccc----
Confidence 22 234568999999996421 112233333222111100 001110111111110000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
... ..+
T Consensus 244 ----------------------------~~~---------------------~~~------------------------- 249 (742)
T TIGR03817 244 ----------------------------LTG---------------------ENG------------------------- 249 (742)
T ss_pred ----------------------------ccc---------------------ccc-------------------------
Confidence 000 000
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
. .........+...|.+++.. +.++||||++|..++.+
T Consensus 250 ---------------------~----------------~~r~~~~~~~~~~l~~l~~~-----~~~~IVF~~sr~~ae~l 287 (742)
T TIGR03817 250 ---------------------A----------------PVRRSASAEAADLLADLVAE-----GARTLTFVRSRRGAELV 287 (742)
T ss_pred ---------------------c----------------ccccchHHHHHHHHHHHHHC-----CCCEEEEcCCHHHHHHH
Confidence 0 00000001233444444432 35899999999999999
Q ss_pred HHHHhhCC----CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHH
Q 000379 431 ERFVKKVP----FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1604)
Q Consensus 431 ~~~L~~~~----~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~ 506 (1604)
+..|+... ...+.++..+||. +++++|.+++++|++|++++||||+++++|||||++++||+||.|.+..
T Consensus 288 ~~~l~~~l~~~~~~l~~~v~~~hgg------~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~ 361 (742)
T TIGR03817 288 AAIARRLLGEVDPDLAERVAAYRAG------YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRA 361 (742)
T ss_pred HHHHHHHHHhhccccccchhheecC------CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHH
Confidence 99876531 0013567788887 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCce--EEEEEe
Q 000379 507 SYIQSRGRARQHNSQ--FILMLE 527 (1604)
Q Consensus 507 syiQr~GRA~R~gs~--~i~~v~ 527 (1604)
+|+||+|||||.|.. .++++.
T Consensus 362 ~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 362 SLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999864 444443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=346.51 Aligned_cols=314 Identities=17% Similarity=0.252 Sum_probs=218.7
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
.+|++|.++++.++ ++|+++++|||+|||+++++++... .+.++|++|+++|+.||.+.++. .++.+..
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~ 94 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQVDQLLA-NGVAAAC 94 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEE
Confidence 68999999999987 5899999999999999999876531 23589999999999999999985 4777777
Q ss_pred EECCCCCCccchhHHHHh-cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHHHHH--hhcCC
Q 000379 124 YYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFY--HKSDN 199 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~-~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~~~~--~~~~~ 199 (1604)
+.++...+.. ...+... ....+++++||+.|........+...++++||+||||++... |.+...+..+- ....+
T Consensus 95 ~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p 173 (607)
T PRK11057 95 LNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP 173 (607)
T ss_pred EcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC
Confidence 7766543321 1222222 245789999999986432222334457899999999998754 33332222221 11224
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..++++||||+.... ...+...++. ..|......++....
T Consensus 174 ~~~~v~lTAT~~~~~-----------~~di~~~l~l---------------~~~~~~~~~~~r~nl-------------- 213 (607)
T PRK11057 174 TLPFMALTATADDTT-----------RQDIVRLLGL---------------NDPLIQISSFDRPNI-------------- 213 (607)
T ss_pred CCcEEEEecCCChhH-----------HHHHHHHhCC---------------CCeEEEECCCCCCcc--------------
Confidence 567899999975321 1112222210 001000000000000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
.|. +
T Consensus 214 ---------------~~~-v------------------------------------------------------------ 217 (607)
T PRK11057 214 ---------------RYT-L------------------------------------------------------------ 217 (607)
T ss_pred ---------------eee-e------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
. ....++..+..++.. ..+.++||||+++..++.++..|..
T Consensus 218 ------------~---------------------~~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~--- 258 (607)
T PRK11057 218 ------------V---------------------EKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS--- 258 (607)
T ss_pred ------------e---------------------eccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh---
Confidence 0 000122233333332 2345799999999999999999987
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||. |+.++|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|
T Consensus 259 -~g~~v~~~Ha~------l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 259 -RGISAAAYHAG------LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331 (607)
T ss_pred -CCCCEEEecCC------CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCC
Confidence 47889999998 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred c--eEEEEEeccCH
Q 000379 520 S--QFILMLERGNL 531 (1604)
Q Consensus 520 s--~~i~~v~~~~~ 531 (1604)
. ..++|+...+.
T Consensus 332 ~~~~~ill~~~~d~ 345 (607)
T PRK11057 332 LPAEAMLFYDPADM 345 (607)
T ss_pred CCceEEEEeCHHHH
Confidence 4 57788776543
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=351.55 Aligned_cols=328 Identities=19% Similarity=0.188 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhC---CCCeEEEEEecChhhHHHHHHHHHh----
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN---GFKKLIIFLAPTVHLVHQQYDVIRV---- 115 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~---~~~~~vl~LvPt~~Lv~Q~~~~i~~---- 115 (1604)
-.|+++|.++++.++ ++|+|+++|||||||++|.+++.+.+...... ..+.++|+|+|+++|+.|+++.+..
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 359999999999987 58999999999999999999877655422111 2356799999999999999886542
Q ss_pred ---h-------c-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCc--CccceeEEEEeCcccccC
Q 000379 116 ---H-------T-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 116 ---~-------~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~--~l~~i~llI~DEaH~~~~ 182 (1604)
. + ++++...+|+..... ........++|+|+||+.|..++.+..+ .+.++++||+||||++.+
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~~----r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSYE----KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHHH----HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 1 1 567888888865432 1122234789999999999877765432 468899999999999985
Q ss_pred CCh---HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceee-e
Q 000379 183 NHP---YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESC-R 258 (1604)
Q Consensus 183 ~~~---~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~-~ 258 (1604)
..- +...+..+.......++++|||||+.. ...+..++....... .+++.... .
T Consensus 187 ~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-------------~~~va~~L~~~~~~~---------~~r~~~iv~~ 244 (876)
T PRK13767 187 NKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-------------LEEVAKFLVGYEDDG---------EPRDCEIVDA 244 (876)
T ss_pred CccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-------------HHHHHHHhcCccccC---------CCCceEEEcc
Confidence 421 222333333333456899999999642 123333332210000 00000000 0
Q ss_pred eccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000379 259 FYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338 (1604)
Q Consensus 259 ~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~ 338 (1604)
.+... . .+. +. .+ ...+..
T Consensus 245 ~~~k~-~---~i~--v~------~p------------~~~l~~------------------------------------- 263 (876)
T PRK13767 245 RFVKP-F---DIK--VI------SP------------VDDLIH------------------------------------- 263 (876)
T ss_pred CCCcc-c---eEE--Ee------cc------------Cccccc-------------------------------------
Confidence 00000 0 000 00 00 000000
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEE
Q 000379 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1604)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~I 418 (1604)
. . ...........|.+++.. ..++|
T Consensus 264 -----------------------------------~--------~-------~~~~~~~l~~~L~~~i~~-----~~~~L 288 (876)
T PRK13767 264 -----------------------------------T--------P-------AEEISEALYETLHELIKE-----HRTTL 288 (876)
T ss_pred -----------------------------------c--------c-------cchhHHHHHHHHHHHHhc-----CCCEE
Confidence 0 0 000000111223333332 23799
Q ss_pred EEEchHHHHHHHHHHHhhCCC--CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEE
Q 000379 419 IFVERIIAAKVVERFVKKVPF--LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYV 496 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~--~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlV 496 (1604)
|||+++..|+.++..|..... ..+..+..+||+ |++++|..++++|++|++++||||+++++|||+|++++|
T Consensus 289 VF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~------ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 289 IFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS------LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred EEeCCHHHHHHHHHHHHHhchhhccccceeeeeCC------CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 999999999999998876321 123568888998 999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhhhhcccC
Q 000379 497 IRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 497 I~fD~p~s~~syiQr~GRA~R~g 519 (1604)
|+||.|.+..+|+||+|||||.+
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999999874
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=343.99 Aligned_cols=313 Identities=19% Similarity=0.272 Sum_probs=223.9
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
++|++|.++++.++ ++|+++++|||+|||++|.+++.. ..+.++|++|+++|+.||.+.++. .++.+..
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------~~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~ 82 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------LKGLTVVISPLISLMKDQVDQLRA-AGVAAAY 82 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHH-cCCcEEE
Confidence 58999999999998 599999999999999999887642 123589999999999999999986 5888888
Q ss_pred EECCCCCCccchhHHHHh-cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHH---HHHHHhhcC
Q 000379 124 YYGAKGVDEWDSQCWQKE-INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKI---MKEFYHKSD 198 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~-~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~i---m~~~~~~~~ 198 (1604)
++|+...+.. ...+... ....+|+++||+.|........+...++++|||||||++... |.+... +..+....+
T Consensus 83 ~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~ 161 (591)
T TIGR01389 83 LNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP 161 (591)
T ss_pred EeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC
Confidence 8887654432 2223332 356899999999997654444556678999999999999754 333322 222222333
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~ 278 (1604)
..| +++||||+... ....+...++.. .+......++....
T Consensus 162 ~~~-vi~lTAT~~~~-----------~~~~i~~~l~~~---------------~~~~~~~~~~r~nl------------- 201 (591)
T TIGR01389 162 QVP-RIALTATADAE-----------TRQDIRELLRLA---------------DANEFITSFDRPNL------------- 201 (591)
T ss_pred CCC-EEEEEeCCCHH-----------HHHHHHHHcCCC---------------CCCeEecCCCCCCc-------------
Confidence 444 99999997532 122333333210 00000000000000
Q ss_pred hhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHH
Q 000379 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1604)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1604)
.|
T Consensus 202 ----------------~~-------------------------------------------------------------- 203 (591)
T TIGR01389 202 ----------------RF-------------------------------------------------------------- 203 (591)
T ss_pred ----------------EE--------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCC
Q 000379 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVP 438 (1604)
Q Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~ 438 (1604)
. . .....+...+.+++.... +.++||||+++..++.+++.|..
T Consensus 204 ----------------------~--------v--~~~~~~~~~l~~~l~~~~---~~~~IIf~~sr~~~e~la~~L~~-- 246 (591)
T TIGR01389 204 ----------------------S--------V--VKKNNKQKFLLDYLKKHR---GQSGIIYASSRKKVEELAERLES-- 246 (591)
T ss_pred ----------------------E--------E--EeCCCHHHHHHHHHHhcC---CCCEEEEECcHHHHHHHHHHHHh--
Confidence 0 0 000123334444444322 35799999999999999999987
Q ss_pred CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhccc
Q 000379 439 FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQH 518 (1604)
Q Consensus 439 ~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~ 518 (1604)
.++.+..+||. |+.++|..++++|++|+++|||||+++++|||+|+++.||+||+|.|..+|+|++|||||.
T Consensus 247 --~g~~~~~~H~~------l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~ 318 (591)
T TIGR01389 247 --QGISALAYHAG------LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRD 318 (591)
T ss_pred --CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCC
Confidence 47888999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc--eEEEEEeccCH
Q 000379 519 NS--QFILMLERGNL 531 (1604)
Q Consensus 519 gs--~~i~~v~~~~~ 531 (1604)
|. ..++++...+.
T Consensus 319 G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 319 GLPAEAILLYSPADI 333 (591)
T ss_pred CCCceEEEecCHHHH
Confidence 84 46666665443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=330.94 Aligned_cols=324 Identities=22% Similarity=0.266 Sum_probs=216.9
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-- 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~-- 119 (1604)
.++||+||.+++..+++ +++|+++|||+|||+++..+++..+. ..+.++||||||++|+.||.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~-----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE-----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 47899999999988875 77999999999999998877665544 12337999999999999999999987642
Q ss_pred -cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 120 -EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 120 -~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
.+..+.|+.... ...+|+|+|+|.+.+.... .++++++||+|||||+... .+..++..+ +
T Consensus 187 ~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~-~~~~il~~~----~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGK-SLTSIITKL----D 247 (501)
T ss_pred cceeEEecCcccC-----------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccch-hHHHHHHhh----h
Confidence 344455543221 2579999999999764422 3578999999999999764 466666543 3
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh-hccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+.++++||||||..+.. ....+...++...+.++-.+.+. .+...+....+..... .
T Consensus 248 ~~~~~lGLTATp~~~~~---------~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~-~------------ 305 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKA---------NILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYP-D------------ 305 (501)
T ss_pred ccceEEEEeccCCCccc---------cHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCC-H------------
Confidence 45789999999964321 12223444554433332111111 1111111000000000 0
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
.... .+. -+.|.
T Consensus 306 -----------------------~~~~----~~~------------~~~~~----------------------------- 317 (501)
T PHA02558 306 -----------------------EDRV----KLK------------GEDYQ----------------------------- 317 (501)
T ss_pred -----------------------HHhh----hhc------------ccchH-----------------------------
Confidence 0000 000 00000
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
+....+. ....+...+.+++.... ..+.+++||++++.+++.|++.|..
T Consensus 318 -----~~~~~l~------------------------~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~- 366 (501)
T PHA02558 318 -----EEIKYIT------------------------SHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKK- 366 (501)
T ss_pred -----HHHHHHh------------------------ccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHH-
Confidence 0000000 00112222333332222 2334788988999999999999988
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEc-cccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFAT-DVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT-~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.+.++..+||. |+.++|..+++.|++|+..+|||| ++++||+|+|++++||.++++.+...|+||+||++
T Consensus 367 ---~g~~v~~i~G~------~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~ 437 (501)
T PHA02558 367 ---VYDKVYYVSGE------VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVL 437 (501)
T ss_pred ---cCCCEEEEeCC------CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccc
Confidence 36789999999 899999999999999999999998 89999999999999999999999999999999999
Q ss_pred ccCc
Q 000379 517 QHNS 520 (1604)
Q Consensus 517 R~gs 520 (1604)
|.+.
T Consensus 438 R~~~ 441 (501)
T PHA02558 438 RKHG 441 (501)
T ss_pred cCCC
Confidence 9874
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=345.01 Aligned_cols=445 Identities=16% Similarity=0.164 Sum_probs=247.8
Q ss_pred CCCCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 41 SINFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
...+.|.|||.++...+.. .++|+++++|.|||..|++++.+++. .+..+++|||||+ .|+.||..++.+.+
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~----~g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL----TGRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH----cCCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 4568899999999988754 67999999999999999999888765 3455679999998 99999999999989
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHH-HhcCcCccceeEEEEeCcccccCC----ChHHHHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL-RKAFLSLDIVCFIVIDECHHATGN----HPYTKIMKE 192 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l-~~~~~~l~~i~llI~DEaH~~~~~----~~~~~im~~ 192 (1604)
++.+.++.++.....+... ...+...+++|+|++.+...- ....+.-..|++||+|||||+... ..-.+.+..
T Consensus 223 ~l~~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 NLRFSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred CCCeEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 9888777655322111000 012236789999999886521 111222347899999999999731 122223332
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh----hccCCcceeeeeccCCCcccc
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME----VFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~----~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
+ ....+++|+|||||+.++ .+.+-.+-+.+++..+.. ...+. .|.+-..-.....+.... ..
T Consensus 301 L---a~~~~~~LLLTATP~q~~--------~~e~falL~lLdP~~f~~--~~~F~~e~~~~~~~a~~v~~l~~~~~~-~~ 366 (956)
T PRK04914 301 L---AEVIPGVLLLTATPEQLG--------QESHFARLRLLDPDRFHD--YEAFVEEQQQYRPVADAVQALLAGEKL-SD 366 (956)
T ss_pred H---hhccCCEEEEEcCcccCC--------cHHHHHhhhhhCCCcCCC--HHHHHHHHHhhHHHHHHHHHHhcCCcC-CH
Confidence 2 235689999999999864 122334446666654422 11111 010000000000000000 00
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHH-hhh
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI-----CAYEAVKICLEK-VLK 342 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~-----~~~~~~~~~~~~-~~~ 342 (1604)
.....+...... ..+..+...+...-..-......+... .++..|.- .....+...... ...
T Consensus 367 ~~~~~l~~ll~~--~~~~~l~~~~~~~~~~~~~~~~~~i~~----------L~d~hg~~rvm~RntR~~v~~fp~R~~~~ 434 (956)
T PRK04914 367 DALNALGELLGE--QDIEPLLQAANSDSEEAQAARQELISE----------LLDRHGTGRVLFRNTRAAVKGFPKRELHP 434 (956)
T ss_pred HHHHHHHHHhcc--cchhHHHhhhcccccccHHHHHHHHHH----------HHhhcCcceEEEeccHHhhcCCCcCceeE
Confidence 000000000000 000000000000000000000000000 01111100 000000000000 000
Q ss_pred h-HHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEE
Q 000379 343 A-QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFV 421 (1604)
Q Consensus 343 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv 421 (1604)
. ......|.... .. .........+.. .. ... .. .........++|+..|.++|+... ..|+||||
T Consensus 435 ~~l~~~~~y~~~~---~~---~~~~~~~~~l~p-e~-~~~-~~--~~~~~~~~~d~Ki~~L~~~L~~~~---~~KvLVF~ 500 (956)
T PRK04914 435 IPLPLPEQYQTAI---KV---SLEARARDMLYP-EQ-IYQ-EF--EDNATWWNFDPRVEWLIDFLKSHR---SEKVLVIC 500 (956)
T ss_pred eecCCCHHHHHHH---HH---hHHHHHHhhcCH-HH-HHH-HH--hhhhhccccCHHHHHHHHHHHhcC---CCeEEEEe
Confidence 0 00000000000 00 000000000000 00 000 00 000011234689999999998653 56999999
Q ss_pred chHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC--CceEEEEccccccccCCCCccEEEEc
Q 000379 422 ERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLLFATDVIEEGMHVPNCSYVIRF 499 (1604)
Q Consensus 422 ~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g--~~~iLIaT~vleeGIDip~~nlVI~f 499 (1604)
+++.++..|.+.|... .++++..+||+ |+..+|.++++.|+++ .++|||||+++++|+|++.|++||+|
T Consensus 501 ~~~~t~~~L~~~L~~~---~Gi~~~~ihG~------~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 501 AKAATALQLEQALRER---EGIRAAVFHEG------MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CcHHHHHHHHHHHhhc---cCeeEEEEECC------CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 9999999999999642 47899999998 8999999999999985 59999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHHHHH
Q 000379 500 DLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 500 D~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|+|||+..|+||+||++|.|++ .++++..+.. .+.+.+++.+
T Consensus 572 DlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~--~e~i~~~~~~ 617 (956)
T PRK04914 572 DLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTA--QERLFRWYHE 617 (956)
T ss_pred cCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCH--HHHHHHHHhh
Confidence 9999999999999999999985 2233334443 3455555544
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=303.72 Aligned_cols=334 Identities=17% Similarity=0.237 Sum_probs=247.2
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh-hCCCCeEEEEEecChhhHHHHHHHHHhhc----
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---- 117 (1604)
-+..+.|...+..++ ++|+++.+-||+|||+++++++.+++.... ....+-.++|+|||++|+.|.+.+.+..+
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 457899999998887 599999999999999999998888775333 23345569999999999999999988754
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC-cCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
++.+..+.||.+... .-++....++|+|+||++|++.+.+.. .-...+..+|+|||+|+..- .|..-|......
T Consensus 183 ~~~v~~viGG~~~~~----e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~-GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSV----EADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI-GFEEDVEQIIKI 257 (543)
T ss_pred CcceEEEeCCccchH----HHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc-ccHHHHHHHHHh
Confidence 677999999876432 123344589999999999999998743 23455689999999999865 677777777777
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.+...+.+++|||-. ..+++|.... .. .| ..+.......
T Consensus 258 lpk~rqt~LFSAT~~------------~kV~~l~~~~L~~----------------d~--~~v~~~d~~~---------- 297 (543)
T KOG0342|consen 258 LPKQRQTLLFSATQP------------SKVKDLARGALKR----------------DP--VFVNVDDGGE---------- 297 (543)
T ss_pred ccccceeeEeeCCCc------------HHHHHHHHHhhcC----------------Cc--eEeecCCCCC----------
Confidence 778889999999943 2344444321 10 00 0000000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
T Consensus 298 -------------------------------------------------------------------------------- 297 (543)
T KOG0342|consen 298 -------------------------------------------------------------------------------- 297 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.+..+.+++.. ++ .....++..|..+|+++.. ..++||||.+-+.+..++.+|.
T Consensus 298 ------~~The~l~Qgy------vv------------~~~~~~f~ll~~~LKk~~~--~~KiiVF~sT~~~vk~~~~lL~ 351 (543)
T KOG0342|consen 298 ------RETHERLEQGY------VV------------APSDSRFSLLYTFLKKNIK--RYKIIVFFSTCMSVKFHAELLN 351 (543)
T ss_pred ------cchhhcccceE------Ee------------ccccchHHHHHHHHHHhcC--CceEEEEechhhHHHHHHHHHh
Confidence 00000000000 00 0112346777788877643 2799999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
. ..+.|..+||. +++..|..+...|++.+.-|||||+|+++|+|+|+++.||+||+|.++.+||||+||+
T Consensus 352 ~----~dlpv~eiHgk------~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 352 Y----IDLPVLEIHGK------QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred h----cCCchhhhhcC------CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 6 36889999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc--eEEEEEeccCHHHHHHHH
Q 000379 516 RQHNS--QFILMLERGNLKQRNKLF 538 (1604)
Q Consensus 516 ~R~gs--~~i~~v~~~~~~~~~~l~ 538 (1604)
+|.|. +.++++.+.+..-.+.++
T Consensus 422 aR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccCCCceEEEEeChhHHHHHHHHh
Confidence 99885 477777655444333333
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=341.72 Aligned_cols=324 Identities=20% Similarity=0.264 Sum_probs=227.2
Q ss_pred CCCCcHHHHHHHHHh-h-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000379 43 NFIPRIYQLKVFEVA-K-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~-l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~--~~ 118 (1604)
..+|+|+|.++++.. . ++|+++++|||+|||++|.++|...+. +++++||++|+++|+.|+++.++++ ++
T Consensus 21 ~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P~raLa~q~~~~~~~~~~~g 94 (737)
T PRK02362 21 IEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVPLRALASEKFEEFERFEELG 94 (737)
T ss_pred CCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeChHHHHHHHHHHHHHhhcCC
Confidence 357999999999974 3 689999999999999999998877654 3456999999999999999999975 37
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCCh---HHHHHHHHHh
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKEFYH 195 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~---~~~im~~~~~ 195 (1604)
+++..++|+...+. ..+..++|+|+||+.+..+++++...+.++++||+||||++..... +..++..+.
T Consensus 95 ~~v~~~tGd~~~~~-------~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~- 166 (737)
T PRK02362 95 VRVGISTGDYDSRD-------EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLR- 166 (737)
T ss_pred CEEEEEeCCcCccc-------cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHH-
Confidence 89999999865432 2245789999999999988887766688999999999999865321 222233221
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.....+|++|||||+.+ ..++..++++..+....+ +.|....+.+.......
T Consensus 167 ~~~~~~qii~lSATl~n-------------~~~la~wl~~~~~~~~~r-------pv~l~~~v~~~~~~~~~-------- 218 (737)
T PRK02362 167 RLNPDLQVVALSATIGN-------------ADELADWLDAELVDSEWR-------PIDLREGVFYGGAIHFD-------- 218 (737)
T ss_pred hcCCCCcEEEEcccCCC-------------HHHHHHHhCCCcccCCCC-------CCCCeeeEecCCeeccc--------
Confidence 23356899999999752 245667777543322211 11111111111000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
..
T Consensus 219 -------------------------~~----------------------------------------------------- 220 (737)
T PRK02362 219 -------------------------DS----------------------------------------------------- 220 (737)
T ss_pred -------------------------cc-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
...+ ......+.+..+.+.+. .+.++||||++|..++.++..|.
T Consensus 221 -------------~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~ 264 (737)
T PRK02362 221 -------------QREV------------------EVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAA 264 (737)
T ss_pred -------------cccC------------------CCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHH
Confidence 0000 00000122333333332 23479999999999888877765
Q ss_pred hCCC--C----------------------C--------CeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccc
Q 000379 436 KVPF--L----------------------T--------HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDV 483 (1604)
Q Consensus 436 ~~~~--~----------------------~--------~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~v 483 (1604)
.... + . ...++++||+ |++.+|..+++.|++|.++|||||++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag------l~~~eR~~ve~~Fr~G~i~VLvaT~t 338 (737)
T PRK02362 265 SALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG------LSREHRELVEDAFRDRLIKVISSTPT 338 (737)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC------CCHHHHHHHHHHHHcCCCeEEEechh
Confidence 4210 0 0 0246777777 99999999999999999999999999
Q ss_pred cccccCCCCccEEEE----cC-----CCCCHHHHHHHhhhhcccCc----eEEEEEec
Q 000379 484 IEEGMHVPNCSYVIR----FD-----LPKTVSSYIQSRGRARQHNS----QFILMLER 528 (1604)
Q Consensus 484 leeGIDip~~nlVI~----fD-----~p~s~~syiQr~GRA~R~gs----~~i~~v~~ 528 (1604)
+++|||+|+.++||+ || .|.+..+|.||+|||||.|. ..++++..
T Consensus 339 la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 339 LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999999999999997 87 58899999999999999883 45666643
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=293.16 Aligned_cols=340 Identities=19% Similarity=0.248 Sum_probs=240.8
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHH---HHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ---AIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~---~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
..-+|.|+|.+|++.++ +.++|.++.||+|||++++++-.-++. ..........+|++.||++|+.|...+..++.
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 34579999999999988 599999999999999999985332221 11123455679999999999999988877654
Q ss_pred --CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHh
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 118 --~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
+++...++|+.+-+. .-..+-.+.+|+++||+.|.++...+.+++..+.+||+|||+++++-.---+|++-++.
T Consensus 319 yng~ksvc~ygggnR~e----qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNE----QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hcCcceEEEecCCCchh----HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 788888888876554 23445568999999999999999999999999999999999999865333344443332
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
..+..+.+..|||=. ..++.|.. .|...|.... ........
T Consensus 395 -iRPDRqtvmTSATWP------------~~VrrLa~----------------sY~Kep~~v~--vGsLdL~a-------- 435 (629)
T KOG0336|consen 395 -IRPDRQTVMTSATWP------------EGVRRLAQ----------------SYLKEPMIVY--VGSLDLVA-------- 435 (629)
T ss_pred -cCCcceeeeecccCc------------hHHHHHHH----------------HhhhCceEEE--ecccceee--------
Confidence 223446677778822 11222221 1222221110 00000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
T Consensus 436 -------------------------------------------------------------------------------- 435 (629)
T KOG0336|consen 436 -------------------------------------------------------------------------------- 435 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.+.+.+ .+-....+.|+...-.++.... .+.++||||.++..|+-|..-|.
T Consensus 436 ---------~~sVkQ------------------~i~v~~d~~k~~~~~~f~~~ms--~ndKvIiFv~~K~~AD~LSSd~~ 486 (629)
T KOG0336|consen 436 ---------VKSVKQ------------------NIIVTTDSEKLEIVQFFVANMS--SNDKVIIFVSRKVMADHLSSDFC 486 (629)
T ss_pred ---------eeeeee------------------eEEecccHHHHHHHHHHHHhcC--CCceEEEEEechhhhhhccchhh
Confidence 000000 0000111345544444445443 45699999999999887765443
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
+.++....+||+ -++.+|+..++.|++|+++|||||+++++|||+|++.+|++||.|.+...|+||+||+
T Consensus 487 ----l~gi~~q~lHG~------r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 487 ----LKGISSQSLHGN------REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred ----hcccchhhccCC------hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 368899999998 5799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCce--EEEEEeccCHHHHHHHHHHHHH
Q 000379 516 RQHNSQ--FILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 516 ~R~gs~--~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
||.|.+ .+.|+...+..-.+.|-+++++
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 999965 7778877666555555555543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=336.62 Aligned_cols=318 Identities=19% Similarity=0.263 Sum_probs=219.6
Q ss_pred CCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 42 INFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..++|+++|.++++.++. .|.++++|||+|||.+|+.++...+. .+++++|||||++|+.|+++.++
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------~g~qvlvLvPT~~LA~Q~~~~f~ 521 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------DGKQVAVLVPTTLLAQQHFETFK 521 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------hCCeEEEEeCcHHHHHHHHHHHH
Confidence 467899999999999974 58999999999999999998776654 23579999999999999999999
Q ss_pred hhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHH
Q 000379 115 VHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190 (1604)
Q Consensus 115 ~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 190 (1604)
+.+ ++++..++|..+.... .+.+.... +..+|||+||..+ +..+.+.++++||+||+|+.... ....
T Consensus 522 ~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv~--~~~~- 592 (926)
T TIGR00580 522 ERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGVK--QKEK- 592 (926)
T ss_pred HHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccchh--HHHH-
Confidence 865 5778888887654332 12233222 3589999999644 34567889999999999997321 2222
Q ss_pred HHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHH-HHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 191 KEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQIS-ELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 191 ~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~-~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
+......+++|+|||||+... +. .+....+..+.. ..|.... .
T Consensus 593 ---L~~~~~~~~vL~~SATpiprt-----------l~~~l~g~~d~s~I~-----------~~p~~R~------~----- 636 (926)
T TIGR00580 593 ---LKELRTSVDVLTLSATPIPRT-----------LHMSMSGIRDLSIIA-----------TPPEDRL------P----- 636 (926)
T ss_pred ---HHhcCCCCCEEEEecCCCHHH-----------HHHHHhcCCCcEEEe-----------cCCCCcc------c-----
Confidence 223346789999999997421 10 000001110000 0000000 0
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
+... +..
T Consensus 637 ----V~t~------------------v~~--------------------------------------------------- 643 (926)
T TIGR00580 637 ----VRTF------------------VME--------------------------------------------------- 643 (926)
T ss_pred ----eEEE------------------EEe---------------------------------------------------
Confidence 0000 000
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHH-HHHHHHHHhhCCCCCcEEEEEEchHHHHH
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFVERIIAAK 428 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~~~~~~~~IIFv~~r~ta~ 428 (1604)
.....+ ..+.+.+. .+.+++|||+++.+++
T Consensus 644 --------------------------------------------~~~~~i~~~i~~el~-----~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 644 --------------------------------------------YDPELVREAIRRELL-----RGGQVFYVHNRIESIE 674 (926)
T ss_pred --------------------------------------------cCHHHHHHHHHHHHH-----cCCeEEEEECCcHHHH
Confidence 000000 00111111 2347999999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC-CHHH
Q 000379 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSS 507 (1604)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~-s~~s 507 (1604)
.+++.|+.. ++++++..+||. |++++|.+++++|++|+++|||||+++|+|||+|++++||++|.+. +..+
T Consensus 675 ~l~~~L~~~--~p~~~v~~lHG~------m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~ 746 (926)
T TIGR00580 675 KLATQLREL--VPEARIAIAHGQ------MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQ 746 (926)
T ss_pred HHHHHHHHh--CCCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHH
Confidence 999999874 246789999999 9999999999999999999999999999999999999999999875 6789
Q ss_pred HHHHhhhhcccCce--EEEEEeccC---HHHHHHHHHH
Q 000379 508 YIQSRGRARQHNSQ--FILMLERGN---LKQRNKLFDI 540 (1604)
Q Consensus 508 yiQr~GRA~R~gs~--~i~~v~~~~---~~~~~~l~~~ 540 (1604)
|.||+||+||.|.+ +++++...+ ....++|+.+
T Consensus 747 l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~ 784 (926)
T TIGR00580 747 LYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAI 784 (926)
T ss_pred HHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHH
Confidence 99999999999865 445554332 3344445433
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=301.84 Aligned_cols=362 Identities=19% Similarity=0.277 Sum_probs=242.0
Q ss_pred CCCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHH----------HHhhCCCCeEEEEEecChhhHHHH
Q 000379 42 INFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQ----------AIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~----------~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
....|.++|.-.++.+.. .+++..++||||||+++.++|.+-+. .....+.++..||++||++|+.|.
T Consensus 200 gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 455799999999998874 79999999999999999998877321 122345566799999999999999
Q ss_pred HHHHHh---hcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCc---CccceeEEEEeCcccccCC
Q 000379 110 YDVIRV---HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL---SLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 110 ~~~i~~---~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~---~l~~i~llI~DEaH~~~~~ 183 (1604)
.+.|.. .+++++..++||..+..+. +-+-..++|||+||++|+.++..+.. ++.+++.||+||+++++..
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQq----RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQQ----RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHHH----HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh
Confidence 888776 5689999999998765421 22224799999999999999987644 5678899999999999976
Q ss_pred ChH---HHHHHHHHh-hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeee
Q 000379 184 HPY---TKIMKEFYH-KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259 (1604)
Q Consensus 184 ~~~---~~im~~~~~-~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 259 (1604)
.-| ..+++.+.. +.....+.|-+|||..-... ..+...... ..
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~--------~~~~~~~k~----------------~~--------- 402 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--------QPLSSSRKK----------------KD--------- 402 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc--------ChhHHhhhc----------------cc---------
Confidence 443 334443321 12234678999999532110 000000000 00
Q ss_pred ccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000379 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339 (1604)
Q Consensus 260 y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~ 339 (1604)
. + ......+...+..+|....-..+.
T Consensus 403 -------------------------------------k-----------~-~~~~~kiq~Lmk~ig~~~kpkiiD----- 428 (731)
T KOG0347|consen 403 -------------------------------------K-----------E-DELNAKIQHLMKKIGFRGKPKIID----- 428 (731)
T ss_pred -------------------------------------h-----------h-hhhhHHHHHHHHHhCccCCCeeEe-----
Confidence 0 0 000001111111222110000000
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEE
Q 000379 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCII 419 (1604)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~II 419 (1604)
...... ....+.+....+ ....|-..|.-+|..| .+++||
T Consensus 429 ---~t~q~~---------------ta~~l~Es~I~C------------------~~~eKD~ylyYfl~ry----PGrTlV 468 (731)
T KOG0347|consen 429 ---LTPQSA---------------TASTLTESLIEC------------------PPLEKDLYLYYFLTRY----PGRTLV 468 (731)
T ss_pred ---cCcchh---------------HHHHHHHHhhcC------------------CccccceeEEEEEeec----CCceEE
Confidence 000000 000000000000 0011222222223333 358999
Q ss_pred EEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEc
Q 000379 420 FVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRF 499 (1604)
Q Consensus 420 Fv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~f 499 (1604)
|||....+..|+-+|..+ ++.+..+|.. |.+++|...+++|++...-|||||+|+++|||||.+.+||||
T Consensus 469 F~NsId~vKRLt~~L~~L----~i~p~~LHA~------M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 469 FCNSIDCVKRLTVLLNNL----DIPPLPLHAS------MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred EechHHHHHHHHHHHhhc----CCCCchhhHH------HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEe
Confidence 999999999999999885 6778889998 999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhcccCce--EEEEEeccCHHHHHHHHHHHHHH
Q 000379 500 DLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 500 D~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
-.|.+..-|+||.||+.|+++. .++|+.+++.....+|.+-+++.
T Consensus 539 qVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred ecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 9999999999999999999986 56667777777777777666543
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=295.01 Aligned_cols=362 Identities=19% Similarity=0.279 Sum_probs=236.7
Q ss_pred CCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh---hCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~---~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
+-.|+..|..+++.+++ ++++|-++||||||++|+++|.+.++... .+..+.-+||||||++||.|.++.+.+...
T Consensus 157 i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 157 ISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred cCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 45689999999999985 99999999999999999999988876433 244567799999999999999999998653
Q ss_pred ----CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeCcccccCC---ChHHHHH
Q 000379 119 ----FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGN---HPYTKIM 190 (1604)
Q Consensus 119 ----~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~-~~~~l~~i~llI~DEaH~~~~~---~~~~~im 190 (1604)
+-.+.+.||.... .....+..+.+|+|+||++|++.|.+ ..+.++++.+|||||++++..- ....+|+
T Consensus 237 ~~hWIVPg~lmGGEkkK----SEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKK----SEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred CceEEeeceeecccccc----cHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 3344455554322 22344556899999999999999987 4678899999999999999743 2344555
Q ss_pred HHHHhh----c--CC---CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh-cCCceeeccchhhhhhccCCcceeeeec
Q 000379 191 KEFYHK----S--DN---KPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFY 260 (1604)
Q Consensus 191 ~~~~~~----~--~~---~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~t~~~~~~l~~~~~~p~e~~~~y 260 (1604)
+..-.. . +. .-+.+++|||...+ +..|..+ |+..++...+.... ... |+..
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~------------V~rLa~~sLkDpv~I~ld~s~~-~~~--p~~~---- 373 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATLTDG------------VNRLADLSLKDPVYISLDKSHS-QLN--PKDK---- 373 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhhHHH------------HHHHhhccccCceeeeccchhh-hcC--cchh----
Confidence 543110 0 11 23458999996532 3333322 22222221111000 000 0000
Q ss_pred cCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 000379 261 DQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340 (1604)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~ 340 (1604)
.+++ .++ -.+. + .++.
T Consensus 374 ------------a~~e----v~~----------~~~~---~---------------------~l~~-------------- 389 (708)
T KOG0348|consen 374 ------------AVQE----VDD----------GPAG---D---------------------KLDS-------------- 389 (708)
T ss_pred ------------hhhh----cCC----------cccc---c---------------------cccc--------------
Confidence 0000 000 0000 0 0000
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHH--HHHHHHHHH-hhCCCCCcEE
Q 000379 341 LKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTK--LHELLQLFL-SFGKSTQVLC 417 (1604)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K--~~~L~~lL~-~~~~~~~~~~ 417 (1604)
+ .+-+.+.+. ...+-+| +-.|..+|. ........++
T Consensus 390 ---------~------------~iPeqL~qr--------------------y~vVPpKLRLV~Laa~L~~~~k~~~~qk~ 428 (708)
T KOG0348|consen 390 ---------F------------AIPEQLLQR--------------------YTVVPPKLRLVALAALLLNKVKFEEKQKM 428 (708)
T ss_pred ---------c------------cCcHHhhhc--------------------eEecCCchhHHHHHHHHHHHhhhhhhcee
Confidence 0 000000000 0011122 233333332 2222334589
Q ss_pred EEEEchHHHHHHHHHHHhhC-----------C-------CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEE
Q 000379 418 IIFVERIIAAKVVERFVKKV-----------P-------FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLF 479 (1604)
Q Consensus 418 IIFv~~r~ta~~L~~~L~~~-----------~-------~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLI 479 (1604)
|||+.+.+.++.-+.++... | -+.+.+...+||. |++++|..+++.|+...--||+
T Consensus 429 iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs------m~QeeRts~f~~Fs~~~~~VLL 502 (708)
T KOG0348|consen 429 IVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS------MEQEERTSVFQEFSHSRRAVLL 502 (708)
T ss_pred EEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc------hhHHHHHHHHHhhccccceEEE
Confidence 99999999998877776531 1 1224567788998 9999999999999998888999
Q ss_pred EccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEeccCHHHHHHHH
Q 000379 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLF 538 (1604)
Q Consensus 480 aT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~~~~~~~l~ 538 (1604)
||+|+++|||+|.+.+||.||+|.+..+|+||+||+.|.|-+ .++|+.+++.+....++
T Consensus 503 cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 503 CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHH
Confidence 999999999999999999999999999999999999999954 78888877665444443
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=306.68 Aligned_cols=330 Identities=17% Similarity=0.259 Sum_probs=251.7
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh----
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---- 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---- 116 (1604)
.-..|.+.|..|++.++ +.+.||.+..|+|||+++..++.+-+. .+.....++||+||++++.|..+.++..
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---SRSSHIQKVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---cccCcceeEEEecchhhhhHHHHHHHHhcccc
Confidence 34578999999999998 689999999999999998876555432 4445667899999999999999999874
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
.|+++..+.||..... -...++.++|+|+||+++..++..+.++++.++|+|+|||+.+.....+...+..++..
T Consensus 121 ~g~~csvfIGGT~~~~-----d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 121 TGARCSVFIGGTAHKL-----DLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred cCcceEEEecCchhhh-----hhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 5899999999986543 23446689999999999999999999999999999999999998877788888888888
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
++...+++.+|||-..+ +. ..|-. +...|..+...-+.... .++++.+..
T Consensus 196 lP~~rQv~a~SATYp~n--------Ld---n~Lsk-----------------~mrdp~lVr~n~~d~~L--~GikQyv~~ 245 (980)
T KOG4284|consen 196 LPQIRQVAAFSATYPRN--------LD---NLLSK-----------------FMRDPALVRFNADDVQL--FGIKQYVVA 245 (980)
T ss_pred cchhheeeEEeccCchh--------HH---HHHHH-----------------HhcccceeecccCCcee--echhheeee
Confidence 88889999999995432 11 22222 22333211111000000 000000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
..
T Consensus 246 ----------------------~~-------------------------------------------------------- 247 (980)
T KOG4284|consen 246 ----------------------KC-------------------------------------------------------- 247 (980)
T ss_pred ----------------------cc--------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
+ . ......+.-|++.|-+++.... ..++||||+....|+-++..|+.
T Consensus 248 -----------------s--------~-----nnsveemrlklq~L~~vf~~ip---y~QAlVF~~~~sra~~~a~~L~s 294 (980)
T KOG4284|consen 248 -----------------S--------P-----NNSVEEMRLKLQKLTHVFKSIP---YVQALVFCDQISRAEPIATHLKS 294 (980)
T ss_pred -----------------C--------C-----cchHHHHHHHHHHHHHHHhhCc---hHHHHhhhhhhhhhhHHHHHhhc
Confidence 0 0 0000001235666666665543 34789999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.|+.|.++.|. |++++|..+++.+|.-.++|||+|+..++|||-+.+|+||+.|.|.+-..|.||+||||
T Consensus 295 ----sG~d~~~ISga------M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAg 364 (980)
T KOG4284|consen 295 ----SGLDVTFISGA------MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAG 364 (980)
T ss_pred ----cCCCeEEeccc------cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcc
Confidence 68999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccC
Q 000379 517 QHNSQ--FILMLERGN 530 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~ 530 (1604)
|.|++ .+.++.++.
T Consensus 365 RFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 365 RFGAHGAAVTLLEDER 380 (980)
T ss_pred cccccceeEEEeccch
Confidence 99987 566666553
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=331.15 Aligned_cols=321 Identities=20% Similarity=0.280 Sum_probs=218.5
Q ss_pred CCCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
....|+|+++|.++++.+.. .|.++++|||||||++|++++...+. .+.+++||+||++|+.|+++.
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHHHHHHH
Confidence 34578999999999998864 38999999999999999998877664 355799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+++.+ ++++..++|+..... ..+.+.... +..+|+|+||+.+.+ .+.+.++++||+||+|+.... . ..
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-q-r~ 401 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKE-RREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-Q-RL 401 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHH-HHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-H-HH
Confidence 99875 689999999876543 223334333 359999999987743 456788999999999997321 1 11
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCcccc
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
.+ ......|++|+|||||.... + .+...-+..+.... . .|... ..
T Consensus 402 ~l----~~~~~~~~iL~~SATp~prt-----------l-~~~~~g~~~~s~i~------~---~p~~r------~~---- 446 (681)
T PRK10917 402 AL----REKGENPHVLVMTATPIPRT-----------L-AMTAYGDLDVSVID------E---LPPGR------KP---- 446 (681)
T ss_pred HH----HhcCCCCCEEEEeCCCCHHH-----------H-HHHHcCCCceEEEe------c---CCCCC------CC----
Confidence 22 12234689999999996321 0 00000000000000 0 00000 00
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
+
T Consensus 447 -----i-------------------------------------------------------------------------- 447 (681)
T PRK10917 447 -----I-------------------------------------------------------------------------- 447 (681)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchH----
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI---- 424 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r---- 424 (1604)
... + ....+...+++.+.... ..+.+++|||+..
T Consensus 448 --------------------~~~-------~--------------~~~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~s~ 485 (681)
T PRK10917 448 --------------------TTV-------V--------------IPDSRRDEVYERIREEI-AKGRQAYVVCPLIEESE 485 (681)
T ss_pred --------------------EEE-------E--------------eCcccHHHHHHHHHHHH-HcCCcEEEEEccccccc
Confidence 000 0 00001112222222111 2345899999853
Q ss_pred ----HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcC
Q 000379 425 ----IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 425 ----~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
..+..+++.|... +.++++..+||+ |+.++|.+++++|++|+++|||||+++++|||+|++++||+||
T Consensus 486 ~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~ 557 (681)
T PRK10917 486 KLDLQSAEETYEELQEA--FPELRVGLLHGR------MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIEN 557 (681)
T ss_pred chhHHHHHHHHHHHHHH--CCCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeC
Confidence 3455667777653 234789999999 9999999999999999999999999999999999999999999
Q ss_pred CCC-CHHHHHHHhhhhcccCce--EEEEEe-ccCHHHHHHHH
Q 000379 501 LPK-TVSSYIQSRGRARQHNSQ--FILMLE-RGNLKQRNKLF 538 (1604)
Q Consensus 501 ~p~-s~~syiQr~GRA~R~gs~--~i~~v~-~~~~~~~~~l~ 538 (1604)
.|. ....+.|++||+||.|.+ +++++. +.+....++++
T Consensus 558 ~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~ 599 (681)
T PRK10917 558 AERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLK 599 (681)
T ss_pred CCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHH
Confidence 997 578899999999999854 455543 22333444444
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=290.14 Aligned_cols=329 Identities=21% Similarity=0.274 Sum_probs=234.0
Q ss_pred CCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---C
Q 000379 45 IPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~ 118 (1604)
.|..+|..+++.++. +|.|..+..|+|||.++++.+..... ..-..+.++.|+||++|+.|.-+++.+.- +
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ 188 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PDVVVPQCICLAPTRELAPQTGEVVEEMGKFTE 188 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---ccccCCCceeeCchHHHHHHHHHHHHHhcCcee
Confidence 588899999999985 99999999999999999987655432 33345568999999999999999988643 3
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~-~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+.+....-+... -+...-..+|+++||+.+++++.. ..+.+..+..+|+|||+++.....+...-..+++..
T Consensus 189 ita~yair~sk~-------~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l 261 (477)
T KOG0332|consen 189 LTASYAIRGSKA-------KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL 261 (477)
T ss_pred eeEEEEecCccc-------ccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhc
Confidence 333333222211 111222568999999999999888 889999999999999999987654444333344455
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
+...+++.+|||-.. ..... ..+.++.|....+.-..
T Consensus 262 P~~~QllLFSATf~e------------~V~~F----------------a~kivpn~n~i~Lk~ee--------------- 298 (477)
T KOG0332|consen 262 PRNQQLLLFSATFVE------------KVAAF----------------ALKIVPNANVIILKREE--------------- 298 (477)
T ss_pred CCcceEEeeechhHH------------HHHHH----------------HHHhcCCCceeeeehhh---------------
Confidence 667899999999421 11111 11222222211110000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
+
T Consensus 299 ----------------------------------------------l--------------------------------- 299 (477)
T KOG0332|consen 299 ----------------------------------------------L--------------------------------- 299 (477)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+..+.++...+ .....|.+.|.++... -.-.+.||||.++.+|..|+..|..
T Consensus 300 ------~L~~IkQlyv~C-----------------~~~~~K~~~l~~lyg~---~tigqsiIFc~tk~ta~~l~~~m~~- 352 (477)
T KOG0332|consen 300 ------ALDNIKQLYVLC-----------------ACRDDKYQALVNLYGL---LTIGQSIIFCHTKATAMWLYEEMRA- 352 (477)
T ss_pred ------cccchhhheeec-----------------cchhhHHHHHHHHHhh---hhhhheEEEEeehhhHHHHHHHHHh-
Confidence 000000000000 0114577777775432 2234789999999999999999988
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC------CHHHHHHH
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK------TVSSYIQS 511 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~------s~~syiQr 511 (1604)
.|..+..+||+ |...+|..++++||+|..+|||+|+|.++|||++.+++||+||+|- ++..|+||
T Consensus 353 ---~Gh~V~~l~G~------l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHR 423 (477)
T KOG0332|consen 353 ---EGHQVSLLHGD------LTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHR 423 (477)
T ss_pred ---cCceeEEeecc------chhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHH
Confidence 58889999999 8999999999999999999999999999999999999999999996 68999999
Q ss_pred hhhhcccCce--EEEEEeccCH-HHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNL-KQRNKLFDII 541 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~-~~~~~l~~~~ 541 (1604)
+||+||.|.+ .+-|+++++. ....++++..
T Consensus 424 iGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 424 IGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred hcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 9999999987 5667765543 3334555444
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=290.77 Aligned_cols=334 Identities=20% Similarity=0.294 Sum_probs=249.5
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHH-H-HhhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ-A-IKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~-~-~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~ 117 (1604)
-+|++.|.++++.++ ++++|-.+-||||||-+++.++.-.+. + ....+.++..||+|||++|+.|.+.+.+++ .
T Consensus 244 ~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y 323 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY 323 (731)
T ss_pred ccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 479999999999887 689999999999999999997665442 1 123467888999999999999999999887 4
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+++++.+||+.+..++.+ .+-.++.||||||++|++++..+-.++.++++|||||++++..- .|-..++.+....
T Consensus 324 gl~~v~~ygGgsk~eQ~k----~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdm-Gfe~qVrSI~~hi 398 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSK----ELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDM-GFEPQVRSIKQHI 398 (731)
T ss_pred cceEEEeecCCcHHHHHH----hhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcc-ccHHHHHHHHhhc
Confidence 899999999987654322 23368999999999999999999999999999999999999754 3333333333333
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh-cCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST-LDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~-l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
.+..+.|.+|||- ...|..|.+- |...+..+.. ++ . ....+
T Consensus 399 rpdrQtllFsaTf------------~~kIe~lard~L~dpVrvVqg--~v----------------g-ean~d------- 440 (731)
T KOG0339|consen 399 RPDRQTLLFSATF------------KKKIEKLARDILSDPVRVVQG--EV----------------G-EANED------- 440 (731)
T ss_pred CCcceEEEeeccc------------hHHHHHHHHHHhcCCeeEEEe--eh----------------h-ccccc-------
Confidence 4556889999994 2344444432 2211111100 00 0 00000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
T Consensus 441 -------------------------------------------------------------------------------- 440 (731)
T KOG0339|consen 441 -------------------------------------------------------------------------------- 440 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
+... -..++ ....|+.-|++.|..+. ...++||||.-+.+++.+...|+-
T Consensus 441 -------ITQ~-V~V~~--------------------s~~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lkl 490 (731)
T KOG0339|consen 441 -------ITQT-VSVCP--------------------SEEKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKL 490 (731)
T ss_pred -------hhhe-eeecc--------------------CcHHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhcc
Confidence 0000 00000 11346777777776664 345899999999999999998875
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+||+ |.+.+|.++|.+|+.+.+.|||||+|+.+|+|||....||+||...+...|.||+||+|
T Consensus 491 ----k~~~v~llhgd------kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 491 ----KGFNVSLLHGD------KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred ----ccceeeeecCc------hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcc
Confidence 68999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccCHHHHHHHHHH
Q 000379 517 QHNSQ--FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~~~~~~~l~~~ 540 (1604)
|.|.+ .+.++++.+.+..-.|-+.
T Consensus 561 Rag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 561 RAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred cccccceeeEEechhhHHHhhHHHHH
Confidence 99975 6677776555543334333
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=310.07 Aligned_cols=336 Identities=22% Similarity=0.321 Sum_probs=233.3
Q ss_pred CCCCCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
....++||+||.++++.+.+ +.+++++|||+|||++++..|..+.. .++||||+.+|+.||++.+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~---------~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR---------STLVLVPTKELLDQWAEALK 101 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC---------CEEEEECcHHHHHHHHHHHH
Confidence 55678899999999998864 67999999999999999999887532 29999999999999999999
Q ss_pred hhcCCc--EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 115 VHTDFE--VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 115 ~~~~~~--v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
.+++.. ++.+.|+. ... . ...|.|+|+|.+.............+++||||||||.... .|..+...
T Consensus 102 ~~~~~~~~~g~~~~~~-~~~------~----~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~ 169 (442)
T COG1061 102 KFLLLNDEIGIYGGGE-KEL------E----PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILEL 169 (442)
T ss_pred HhcCCccccceecCce-ecc------C----CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHh
Confidence 888775 44444432 111 0 1479999999997652222333447999999999999764 56666665
Q ss_pred HHhhcCCCCc-EEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh-hccCCcceeeeeccCCCccccch
Q 000379 193 FYHKSDNKPK-VFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME-VFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 193 ~~~~~~~~p~-iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
+ ..+. +|||||||.+.++ ..+..+...++..++...-.+.+. .+..++....+.......
T Consensus 170 ~-----~~~~~~LGLTATp~R~D~--------~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~----- 231 (442)
T COG1061 170 L-----SAAYPRLGLTATPEREDG--------GRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTED----- 231 (442)
T ss_pred h-----hcccceeeeccCceeecC--------CchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchH-----
Confidence 4 3344 9999999986541 236777777877777776555554 444433322222211000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
....|..... ..... . ...+ .
T Consensus 232 ---------------------~~~~~~~~~~-------~~~~~----~---~~~~------~------------------ 252 (442)
T COG1061 232 ---------------------EEREYAKESA-------RFREL----L---RARG------T------------------ 252 (442)
T ss_pred ---------------------HHHHhhhhhh-------hhhhh----h---hhhh------h------------------
Confidence 0000000000 00000 0 0000 0
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
.........+ ......|+..+..++..+. .+.+++||+.+..++..+
T Consensus 253 --------~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i 299 (442)
T COG1061 253 --------LRAENEARRI-----------------------AIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEI 299 (442)
T ss_pred --------hhHHHHHHHH-----------------------hhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHH
Confidence 0000000000 0011346666666666543 456899999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHH
Q 000379 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1604)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQ 510 (1604)
...+.. .++ +..+.|. .+..+|..++++||.|++++||++.|+.||+|+|+++++|...+..|...|+|
T Consensus 300 ~~~~~~----~~~-~~~it~~------t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q 368 (442)
T COG1061 300 AKLFLA----PGI-VEAITGE------TPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQ 368 (442)
T ss_pred HHHhcC----CCc-eEEEECC------CCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHH
Confidence 999876 334 7888888 58999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhcc
Q 000379 511 SRGRARQ 517 (1604)
Q Consensus 511 r~GRA~R 517 (1604)
|+||.-|
T Consensus 369 ~lGR~LR 375 (442)
T COG1061 369 RLGRGLR 375 (442)
T ss_pred Hhhhhcc
Confidence 9999999
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=324.61 Aligned_cols=311 Identities=23% Similarity=0.307 Sum_probs=213.0
Q ss_pred CCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
...|+|+++|.++++.+.. .|.++++|||||||++|++++...+. .+.+++|++||++|+.|+++.+
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHHHHHHHH
Confidence 4568999999999998864 36899999999999999998877665 3456999999999999999999
Q ss_pred Hhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 114 RVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 114 ~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
++.+ ++++..++|+..... ....|.... ++.+|+|+|+..+.+ .+.+.++++||+||+|+.... ....+
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~-r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-qr~~l 377 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKR-RKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-QRKKL 377 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHH-HHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-HHHHH
Confidence 9876 589999999876543 222343333 468999999997743 356788999999999997421 22222
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
.. .. .....|++|+|||||.... +...+.... +...+ ...+........
T Consensus 378 ~~-~~-~~~~~~~~l~~SATp~prt--------------l~l~~~~~l----~~~~i-~~~p~~r~~i~~---------- 426 (630)
T TIGR00643 378 RE-KG-QGGFTPHVLVMSATPIPRT--------------LALTVYGDL----DTSII-DELPPGRKPITT---------- 426 (630)
T ss_pred HH-hc-ccCCCCCEEEEeCCCCcHH--------------HHHHhcCCc----ceeee-ccCCCCCCceEE----------
Confidence 21 11 0012689999999997421 000000000 00000 000000000000
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
T Consensus 427 -------------------------------------------------------------------------------- 426 (630)
T TIGR00643 427 -------------------------------------------------------------------------------- 426 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchH-----
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERI----- 424 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r----- 424 (1604)
. + . ..+.+ ..+++.+.... ..+.+++|||+..
T Consensus 427 ---------------------~-------~----------~---~~~~~-~~~~~~i~~~l-~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 427 ---------------------V-------L----------I---KHDEK-DIVYEFIEEEI-AKGRQAYVVYPLIEESEK 463 (630)
T ss_pred ---------------------E-------E----------e---CcchH-HHHHHHHHHHH-HhCCcEEEEEcccccccc
Confidence 0 0 0 00001 11222221110 1234789999765
Q ss_pred ---HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC
Q 000379 425 ---IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1604)
Q Consensus 425 ---~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~ 501 (1604)
..+..+++.|... +.++.+..+||+ |+.++|.+++++|++|+.+|||||+++++|||+|++++||+||.
T Consensus 464 ~~~~~a~~~~~~L~~~--~~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~ 535 (630)
T TIGR00643 464 LDLKAAEALYERLKKA--FPKYNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDA 535 (630)
T ss_pred chHHHHHHHHHHHHhh--CCCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCC
Confidence 4566777777653 256789999999 89999999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHhhhhcccCce--EEEEE
Q 000379 502 PK-TVSSYIQSRGRARQHNSQ--FILML 526 (1604)
Q Consensus 502 p~-s~~syiQr~GRA~R~gs~--~i~~v 526 (1604)
|. +..+|.||+||+||.|.+ +++++
T Consensus 536 ~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 536 ERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 87 688999999999999854 55555
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=295.24 Aligned_cols=212 Identities=28% Similarity=0.392 Sum_probs=176.2
Q ss_pred HHHHHHHhcccCCCCCChHHHHHhhccCCCC----CCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhc
Q 000379 1042 SQLREEINCHSRNFHIPSSLILEALTTLGCC----ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117 (1604)
Q Consensus 1042 ~~l~~~l~~~~~~~~~~~~lll~AlT~~s~~----~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~ 1117 (1604)
..|++.|+|.|.| +.++++||||+|+. ...||||||||||++|+++++.+||.+||+.++|.||.+|+.+||
T Consensus 6 ~~l~~~lg~~f~~----~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvs 81 (229)
T PRK00102 6 EELQKKLGYTFKD----PELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVR 81 (229)
T ss_pred HHHHHHhCCCCCC----HHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhC
Confidence 4688999999988 89999999999995 356999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchh
Q 000379 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197 (1604)
Q Consensus 1118 N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~l 1197 (1604)
|.+|+.+|.++||+.||+..+ +..
T Consensus 82 n~~la~~a~~lgl~~~i~~~~---------~~~----------------------------------------------- 105 (229)
T PRK00102 82 EESLAEIARELGLGEYLLLGK---------GEE----------------------------------------------- 105 (229)
T ss_pred HHHHHHHHHHCCcHHHHccCc---------HHH-----------------------------------------------
Confidence 999999999999999998542 000
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHcc
Q 000379 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277 (1604)
Q Consensus 1198 ADvvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH 1277 (1604)
T Consensus 106 -------------------------------------------------------------------------------- 105 (229)
T PRK00102 106 -------------------------------------------------------------------------------- 105 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHH
Q 000379 1278 ASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357 (1604)
Q Consensus 1278 ~S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~ 1357 (1604)
. ......+|+++|+|||+|||||+|+|+ +.+++|+.
T Consensus 106 -------------------------------~-----------~~~~~~~k~~ad~~EA~iGAiyld~g~--~~~~~~i~ 141 (229)
T PRK00102 106 -------------------------------K-----------SGGRRRPSILADAFEALIGAIYLDQGL--EAARKFIL 141 (229)
T ss_pred -------------------------------H-----------cCCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence 0 000124677888888888888888876 67888887
Q ss_pred hhhccccCCC---CCCCCchHHHHHHHHhcCCcceee-e-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHH
Q 000379 1358 PILSPIVTPD---KLELPPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAAS 1430 (1604)
Q Consensus 1358 ~~l~~~i~~~---~~~~~p~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~ 1430 (1604)
.++.|.+... ....||++.|+|+|++.+...+.+ + ...|+. +.|+|.|+++|. .++.|.|.|||+||..||+
T Consensus 142 ~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~skk~Ae~~AA~ 220 (229)
T PRK00102 142 RLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGK-ELGEGTGSSKKEAEQAAAK 220 (229)
T ss_pred HHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHH
Confidence 7777766542 345799999999999988876533 3 334543 789999999986 8999999999999999999
Q ss_pred HHHHHhhh
Q 000379 1431 QLLKKLEV 1438 (1604)
Q Consensus 1431 ~AL~~L~~ 1438 (1604)
+||+.|+.
T Consensus 221 ~Al~~l~~ 228 (229)
T PRK00102 221 QALKKLKE 228 (229)
T ss_pred HHHHHHhh
Confidence 99999875
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=290.59 Aligned_cols=353 Identities=22% Similarity=0.302 Sum_probs=221.5
Q ss_pred CCCCcHHHHHHHHHhh----------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l----------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
.-...|.|...+.+++ .+++.|.+|||||||++|+++|.+.+... .-+.-+++||+||+.|+.|.+++
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R--~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR--PVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC--CccceEEEEEeeHHHHHHHHHHH
Confidence 3456788988888774 28899999999999999999999887521 12346799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhcC----CCcEEEEcHHHHHHHHHh-cCcCccceeEEEEeCcccccCCC
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEIN----KNDVLVMTPQILLDALRK-AFLSLDIVCFIVIDECHHATGNH 184 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~----~~~ViV~T~q~Ll~~l~~-~~~~l~~i~llI~DEaH~~~~~~ 184 (1604)
|.++. |+.|+...|..+...-. .+-.-. ..||+|+||++|++.+.. ..+.+.++.++|+|||+++.+.
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~E~---~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q- 310 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLEDEA---RQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ- 310 (620)
T ss_pred HHHhccCCceEEEecccccchHHHH---HHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH-
Confidence 99875 68888888877654311 111112 349999999999999984 5688999999999999999754
Q ss_pred hHHHHHHHHHhhcCCCC-------cEEEEec--cCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcce
Q 000379 185 PYTKIMKEFYHKSDNKP-------KVFGMTA--SPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255 (1604)
Q Consensus 185 ~~~~im~~~~~~~~~~p-------~iLgLTA--TP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 255 (1604)
.|...+...... -..+ .||-+.- +|.. +.++.+.++
T Consensus 311 sfQ~Wl~~v~~~-~~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~~--------------------- 355 (620)
T KOG0350|consen 311 SFQEWLDTVMSL-CKTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKLG--------------------- 355 (620)
T ss_pred HHHHHHHHHHHH-hCCchhhcChhhhhhhcccCCchh-------------hHHHHhhcC---------------------
Confidence 333322221111 0111 2222221 1110 111111110
Q ss_pred eeeeccCCC--ccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHH
Q 000379 256 SCRFYDQSK--FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLD-ELGLICAYEA 332 (1604)
Q Consensus 256 ~~~~y~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~lG~~~~~~~ 332 (1604)
..|.+.. ..+..+ . ..+.++.++.....+ +..+.. ..|.
T Consensus 356 --~~~~~l~kL~~satL---------------s-----------qdP~Kl~~l~l~~Pr----l~~v~~~~~~r------ 397 (620)
T KOG0350|consen 356 --KLYPPLWKLVFSATL---------------S-----------QDPSKLKDLTLHIPR----LFHVSKPLIGR------ 397 (620)
T ss_pred --CcCchhHhhhcchhh---------------h-----------cChHHHhhhhcCCCc----eEEeeccccee------
Confidence 0111100 000000 0 000000000000000 000000 0000
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCC
Q 000379 333 VKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS 412 (1604)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~ 412 (1604)
|. +...+..... .....-|...+..++..+.
T Consensus 398 -----------------ys------------lp~~l~~~~v------------------v~~~~~kpl~~~~lI~~~k-- 428 (620)
T KOG0350|consen 398 -----------------YS------------LPSSLSHRLV------------------VTEPKFKPLAVYALITSNK-- 428 (620)
T ss_pred -----------------ee------------cChhhhhcee------------------ecccccchHhHHHHHHHhh--
Confidence 00 0000000000 0000124445556665543
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCC
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~ 492 (1604)
-.++|+|+++..++..|.+.|+-...-..+++..+.|. ++.+.|.+.+++|+.|++++|||++++.+|||+-+
T Consensus 429 -~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~------l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~ 501 (620)
T KOG0350|consen 429 -LNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQ------LNGKRRYKMLEKFAKGDINVLICSDALARGIDVND 501 (620)
T ss_pred -cceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhh------hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccc
Confidence 45899999999999999999983222234566678887 89999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEeccC
Q 000379 493 CSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGN 530 (1604)
Q Consensus 493 ~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~ 530 (1604)
++.||+||+|.+..+|+||+||++|+|+. ++.++...+
T Consensus 502 v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 502 VDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred cceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 99999999999999999999999999975 455555443
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=284.11 Aligned_cols=340 Identities=22% Similarity=0.251 Sum_probs=246.7
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh---hCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~---~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
--.|+-.|..+++.++ ++|+++.+.||||||.++++++.+.+-... ....+..+++||||++|+.|.+.++.+..
T Consensus 39 ~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~ 118 (569)
T KOG0346|consen 39 WEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVE 118 (569)
T ss_pred cCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 3468999999999998 589999999999999999998777553111 23456679999999999999999998753
Q ss_pred ----CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC-cCccceeEEEEeCcccccCCChHHHHHHH
Q 000379 118 ----DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF-LSLDIVCFIVIDECHHATGNHPYTKIMKE 192 (1604)
Q Consensus 118 ----~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~im~~ 192 (1604)
.+++.-+..+++... .-....+.++|+|+||..++.++..+. ..++.++++|+|||+-+... .|..-|+.
T Consensus 119 ~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf-GYeedlk~ 193 (569)
T KOG0346|consen 119 YCSKDLRAINLASSMSDSV----NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF-GYEEDLKK 193 (569)
T ss_pred HHHHhhhhhhhhcccchHH----HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc-ccHHHHHH
Confidence 355555555443221 113455789999999999999999887 77889999999999999876 88888888
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
+....++.-+-|+||||.. ..+..|...+- +.|......-..... + .
T Consensus 194 l~~~LPr~~Q~~LmSATl~------------dDv~~LKkL~l----------------~nPviLkl~e~el~~-~----d 240 (569)
T KOG0346|consen 194 LRSHLPRIYQCFLMSATLS------------DDVQALKKLFL----------------HNPVILKLTEGELPN-P----D 240 (569)
T ss_pred HHHhCCchhhheeehhhhh------------hHHHHHHHHhc----------------cCCeEEEeccccCCC-c----c
Confidence 7766676777899999953 23444444321 111110000000000 0 0
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
.+...+..+
T Consensus 241 qL~Qy~v~c----------------------------------------------------------------------- 249 (569)
T KOG0346|consen 241 QLTQYQVKC----------------------------------------------------------------------- 249 (569)
T ss_pred cceEEEEEe-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
...+|+..+.-+|+-- --.++.|||||+.+.+-.|.-
T Consensus 250 -----------------------------------------se~DKflllyallKL~--LI~gKsliFVNtIdr~YrLkL 286 (569)
T KOG0346|consen 250 -----------------------------------------SEEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYRLKL 286 (569)
T ss_pred -----------------------------------------ccchhHHHHHHHHHHH--HhcCceEEEEechhhhHHHHH
Confidence 0123444444444311 112489999999999999998
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc------------------------------
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD------------------------------ 482 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~------------------------------ 482 (1604)
+|.+ -|++..++.|. |+...|.-+++.|..|-+.++|||+
T Consensus 287 fLeq----FGiksciLNse------LP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK 356 (569)
T KOG0346|consen 287 FLEQ----FGIKSCILNSE------LPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKK 356 (569)
T ss_pred HHHH----hCcHhhhhccc------ccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccc
Confidence 8887 47888889988 8999999999999999999999998
Q ss_pred -----ccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEeccCHHHHHHHHHHHHHH
Q 000379 483 -----VIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544 (1604)
Q Consensus 483 -----vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~~~~e 544 (1604)
-..+|||+..++.|||||+|.+..+||||+||++|.+++ .+.|+.+.+......++..+..+
T Consensus 357 ~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 357 LDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred cCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 235799999999999999999999999999999999865 67777766666566777766654
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=289.02 Aligned_cols=321 Identities=21% Similarity=0.315 Sum_probs=236.7
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHH--HH---hhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQ--AI---KSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~--~~---~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
.....|+|+|.+.++-++ +++.|..+=||||||+++++++.-+.- .. ...+.++.-||+||+++|+.|.++.+.
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 567899999999999988 699999999999999999986554332 11 135567778999999999999999988
Q ss_pred hhc---------CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC--
Q 000379 115 VHT---------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-- 183 (1604)
Q Consensus 115 ~~~---------~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-- 183 (1604)
.++ .++...+.|+..+.. ..+....+.+|+|+||++|.++|.+..++++-..++.+|||+++.+-
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~e----ql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGF 343 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVRE----QLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGF 343 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHH----HHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccc
Confidence 754 257888899887654 23445568999999999999999999999999999999999999854
Q ss_pred -ChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccC
Q 000379 184 -HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQ 262 (1604)
Q Consensus 184 -~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 262 (1604)
...+.|...| +...+.|++|||.... |...... . .-+|.... ...
T Consensus 344 Eddir~iF~~F----K~QRQTLLFSATMP~K------------IQ~FAkS------------A----LVKPvtvN--VGR 389 (610)
T KOG0341|consen 344 EDDIRTIFSFF----KGQRQTLLFSATMPKK------------IQNFAKS------------A----LVKPVTVN--VGR 389 (610)
T ss_pred hhhHHHHHHHH----hhhhheeeeeccccHH------------HHHHHHh------------h----cccceEEe--ccc
Confidence 2333343333 3556889999995321 1111110 0 00111100 000
Q ss_pred CCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q 000379 263 SKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK 342 (1604)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~ 342 (1604)
.-.-+ ..+.
T Consensus 390 AGAAs--------------------------------------------------ldVi--------------------- 398 (610)
T KOG0341|consen 390 AGAAS--------------------------------------------------LDVI--------------------- 398 (610)
T ss_pred ccccc--------------------------------------------------hhHH---------------------
Confidence 00000 0000
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEc
Q 000379 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVE 422 (1604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~ 422 (1604)
+.-+|.. ...|+-.|++-|.+ ....++||++
T Consensus 399 -------------QevEyVk--------------------------------qEaKiVylLeCLQK----T~PpVLIFaE 429 (610)
T KOG0341|consen 399 -------------QEVEYVK--------------------------------QEAKIVYLLECLQK----TSPPVLIFAE 429 (610)
T ss_pred -------------HHHHHHH--------------------------------hhhhhhhHHHHhcc----CCCceEEEec
Confidence 0000100 02355566665543 3347999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCC
Q 000379 423 RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502 (1604)
Q Consensus 423 ~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p 502 (1604)
.+..++.+.++|-- .+..+..+||. -++++|...++.||.|+..|||||+|++.|+|+|++.+|||||+|
T Consensus 430 kK~DVD~IhEYLLl----KGVEavaIHGG------KDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 430 KKADVDDIHEYLLL----KGVEAVAIHGG------KDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred cccChHHHHHHHHH----ccceeEEeecC------cchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 99999999998854 68889999998 489999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 503 KTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 503 ~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
.....|+||+||+||.|.+ ...|++..
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999999987 55666644
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=326.37 Aligned_cols=323 Identities=18% Similarity=0.234 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHh-h-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000379 43 NFIPRIYQLKVFEVA-K-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~-l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~--~~ 118 (1604)
..+|+++|.++++.. + ++|+++++|||+|||++|.++|...+. ..+.+++||+|+++|+.|+++.++.+ ++
T Consensus 21 ~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~-----~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 21 IEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL-----REGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHH-----hcCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 357999999999863 3 699999999999999999887766543 13457999999999999999999864 47
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
+++..++|+...+. .| +..++|+|+||+.+..++.++...++++++||+||+|.+.... ....+........
T Consensus 96 ~~v~~~~Gd~~~~~----~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~-rg~~le~il~~l~ 167 (720)
T PRK00254 96 LRVAMTTGDYDSTD----EW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD-RGATLEMILTHML 167 (720)
T ss_pred CEEEEEeCCCCCch----hh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc-chHHHHHHHHhcC
Confidence 89999999865431 23 3578999999999998888776678999999999999996542 2233333333345
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSW 278 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~ 278 (1604)
..++++|||||+.+ ..++..+++...+....+ +.|....+.+.......
T Consensus 168 ~~~qiI~lSATl~n-------------~~~la~wl~~~~~~~~~r-------pv~l~~~~~~~~~~~~~----------- 216 (720)
T PRK00254 168 GRAQILGLSATVGN-------------AEELAEWLNAELVVSDWR-------PVKLRKGVFYQGFLFWE----------- 216 (720)
T ss_pred cCCcEEEEEccCCC-------------HHHHHHHhCCccccCCCC-------CCcceeeEecCCeeecc-----------
Confidence 67899999999753 245556666543222111 11110011110000000
Q ss_pred hhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHH
Q 000379 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCK 358 (1604)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (1604)
. .... .
T Consensus 217 -------------------~--~~~~----~------------------------------------------------- 222 (720)
T PRK00254 217 -------------------D--GKIE----R------------------------------------------------- 222 (720)
T ss_pred -------------------C--cchh----c-------------------------------------------------
Confidence 0 0000 0
Q ss_pred HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC-
Q 000379 359 YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV- 437 (1604)
Q Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~- 437 (1604)
........+.+.+. .+.++||||++|..|+.++..|...
T Consensus 223 -----------------------------------~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~ 262 (720)
T PRK00254 223 -----------------------------------FPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKI 262 (720)
T ss_pred -----------------------------------chHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHH
Confidence 00000111122222 1347999999999887766555321
Q ss_pred ------CC--------------C--------CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccC
Q 000379 438 ------PF--------------L--------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMH 489 (1604)
Q Consensus 438 ------~~--------------~--------~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGID 489 (1604)
+. . -...+.++||. |++++|..+++.|++|.++|||||+++++|+|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag------l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvn 336 (720)
T PRK00254 263 KRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG------LGRTERVLIEDAFREGLIKVITATPTLSAGIN 336 (720)
T ss_pred HHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC------CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcC
Confidence 00 0 01247778887 99999999999999999999999999999999
Q ss_pred CCCccEEEE-------cCCCC-CHHHHHHHhhhhcccC----ceEEEEEecc
Q 000379 490 VPNCSYVIR-------FDLPK-TVSSYIQSRGRARQHN----SQFILMLERG 529 (1604)
Q Consensus 490 ip~~nlVI~-------fD~p~-s~~syiQr~GRA~R~g----s~~i~~v~~~ 529 (1604)
+|+.++||. |+.|. +..+|.||+|||||.| +..++++...
T Consensus 337 ipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 337 LPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 999999994 55444 5679999999999976 3567776544
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=324.43 Aligned_cols=319 Identities=18% Similarity=0.202 Sum_probs=218.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--cC
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH--TD 118 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~--~~ 118 (1604)
..++++++|.++++.+.. +|+++++|||+|||++|.+++.+.+. .+++++|++|+++|+.|++++++++ .+
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------~~~k~v~i~P~raLa~q~~~~~~~l~~~g 92 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------AGLKSIYIVPLRSLAMEKYEELSRLRSLG 92 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------hCCcEEEEechHHHHHHHHHHHHHHhhcC
Confidence 356799999999999874 89999999999999999998877654 2356999999999999999999864 37
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--h-HHHHHHHHHh
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--P-YTKIMKEFYH 195 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~-~~~im~~~~~ 195 (1604)
.++...+|+...+. ..+..++|+|+||+.+..++.+....+.++++||+||||++.+.. + +..++.. ..
T Consensus 93 ~~v~~~~G~~~~~~-------~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~-~~ 164 (674)
T PRK01172 93 MRVKISIGDYDDPP-------DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS-AR 164 (674)
T ss_pred CeEEEEeCCCCCCh-------hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH-HH
Confidence 78888888764321 223478999999999988888776678899999999999986431 1 2222222 12
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.....++++|||||+.. ..++..++++..+.... .+.|.+..+.|....+.
T Consensus 165 ~~~~~~riI~lSATl~n-------------~~~la~wl~~~~~~~~~-------r~vpl~~~i~~~~~~~~--------- 215 (674)
T PRK01172 165 YVNPDARILALSATVSN-------------ANELAQWLNASLIKSNF-------RPVPLKLGILYRKRLIL--------- 215 (674)
T ss_pred hcCcCCcEEEEeCccCC-------------HHHHHHHhCCCccCCCC-------CCCCeEEEEEecCeeee---------
Confidence 23456899999999742 24566677654332211 11121111111100000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
+...
T Consensus 216 ----------------------~~~~------------------------------------------------------ 219 (674)
T PRK01172 216 ----------------------DGYE------------------------------------------------------ 219 (674)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
..+ ..+..++.... ..+.++||||+++..++.++..|.
T Consensus 220 ----------------------------------------~~~-~~~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~ 257 (674)
T PRK01172 220 ----------------------------------------RSQ-VDINSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLI 257 (674)
T ss_pred ----------------------------------------ccc-ccHHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHH
Confidence 000 00011111110 123479999999999998888776
Q ss_pred hC-CCCCC--------------------eeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCcc
Q 000379 436 KV-PFLTH--------------------LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494 (1604)
Q Consensus 436 ~~-~~~~~--------------------~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~n 494 (1604)
.. +.... ..+.++||. |+.++|..+++.|++|.++|||||+++++|+|+|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag------l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~ 331 (674)
T PRK01172 258 QHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG------LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL 331 (674)
T ss_pred HhhhhcccccccccccccccHHHHHHHhcCEEEecCC------CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE
Confidence 53 11001 135667777 9999999999999999999999999999999999865
Q ss_pred EEEEcC---------CCCCHHHHHHHhhhhcccCc----eEEEEEec
Q 000379 495 YVIRFD---------LPKTVSSYIQSRGRARQHNS----QFILMLER 528 (1604)
Q Consensus 495 lVI~fD---------~p~s~~syiQr~GRA~R~gs----~~i~~v~~ 528 (1604)
+|| +| .|.+..+|.||+|||||.|. ..++++..
T Consensus 332 VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 332 VIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred EEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 554 33 25588899999999999983 35555543
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=325.15 Aligned_cols=299 Identities=18% Similarity=0.243 Sum_probs=209.1
Q ss_pred CCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
...++|++.|.++++.++. .|++++++||+|||.+|+.++...+. .+++++|||||++|+.|+++.+
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eLA~Q~~~~f 669 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLLAQQHYDNF 669 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHH
Confidence 4577999999999998874 68999999999999999887765543 3567999999999999999999
Q ss_pred Hhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 114 RVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 114 ~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
++.+ ++++..++|..+...+ .+.|.... ...+|+|+||+.+ +..+.+.++++||+||+|++.- .....
T Consensus 670 ~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG~--~~~e~ 741 (1147)
T PRK10689 670 RDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFGV--RHKER 741 (1147)
T ss_pred HHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcch--hHHHH
Confidence 8754 5678888887654432 22333322 4689999999754 2446678999999999999832 12222
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHH-HHhhcCCceeeccchhhhhhccCCcceeeeeccCCCcccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISE-LESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~-Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
+ ...+..+++|+|||||.... +.. +....+..+... .|... .
T Consensus 742 l----k~l~~~~qvLl~SATpiprt-----------l~l~~~gl~d~~~I~~-----------~p~~r--------~--- 784 (1147)
T PRK10689 742 I----KAMRADVDILTLTATPIPRT-----------LNMAMSGMRDLSIIAT-----------PPARR--------L--- 784 (1147)
T ss_pred H----HhcCCCCcEEEEcCCCCHHH-----------HHHHHhhCCCcEEEec-----------CCCCC--------C---
Confidence 2 23456789999999997421 000 000001100000 00000 0
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
. +
T Consensus 785 ~----v-------------------------------------------------------------------------- 786 (1147)
T PRK10689 785 A----V-------------------------------------------------------------------------- 786 (1147)
T ss_pred C----c--------------------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCC--HHHHHHHHHHHhhCCCCCcEEEEEEchHHH
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS--TKLHELLQLFLSFGKSTQVLCIIFVERIIA 426 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~K~~~L~~lL~~~~~~~~~~~IIFv~~r~t 426 (1604)
.... ..... -|...+.++. .+.+++|||+++.+
T Consensus 787 --------------------~~~~-------------------~~~~~~~~k~~il~el~------r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 787 --------------------KTFV-------------------REYDSLVVREAILREIL------RGGQVYYLYNDVEN 821 (1147)
T ss_pred --------------------eEEE-------------------EecCcHHHHHHHHHHHh------cCCeEEEEECCHHH
Confidence 0000 00000 0111122221 23589999999999
Q ss_pred HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCC-CCH
Q 000379 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP-KTV 505 (1604)
Q Consensus 427 a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p-~s~ 505 (1604)
++.+++.|.+. +++.++..+||. |++++|.+++.+|++|+++|||||+++++|||+|++++||..+.. .+.
T Consensus 822 ie~la~~L~~~--~p~~~v~~lHG~------m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgl 893 (1147)
T PRK10689 822 IQKAAERLAEL--VPEARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 (1147)
T ss_pred HHHHHHHHHHh--CCCCcEEEEeCC------CCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCH
Confidence 99999999874 245688999999 999999999999999999999999999999999999999954432 355
Q ss_pred HHHHHHhhhhcccCce
Q 000379 506 SSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 506 ~syiQr~GRA~R~gs~ 521 (1604)
.+|+||+||+||.|.+
T Consensus 894 aq~~Qr~GRvGR~g~~ 909 (1147)
T PRK10689 894 AQLHQLRGRVGRSHHQ 909 (1147)
T ss_pred HHHHHHhhccCCCCCc
Confidence 6799999999999865
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=312.72 Aligned_cols=406 Identities=18% Similarity=0.195 Sum_probs=243.6
Q ss_pred CCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
.++|+||.+++.++. +.++|+++++|+|||+.++.++.++.. ..+..+.+|||||. +|+.||.++|+++++
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~---~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHE---YRGITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHH---hcCCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 579999999999885 478999999999999999998877654 22334458999997 888999999999985
Q ss_pred -CcEEEEECCCCCCccchhHHHH--hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC-hHHHHHHHHH
Q 000379 119 -FEVEEYYGAKGVDEWDSQCWQK--EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTKIMKEFY 194 (1604)
Q Consensus 119 -~~v~~~~G~~~~~~~~~~~w~~--~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~~~~ 194 (1604)
+++..++|...... ..... .....+|+|+||+.+..... .+.--.|++||+||||++.+.. ...+.++.+
T Consensus 244 ~l~v~~~~G~~~eR~---~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L- 317 (1033)
T PLN03142 244 VLRAVKFHGNPEERA---HQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF- 317 (1033)
T ss_pred CCceEEEeCCHHHHH---HHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh-
Confidence 67777887532111 11111 12468999999999876432 3333468899999999997632 233444433
Q ss_pred hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC---CceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 195 HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD---SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 195 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~---~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
...++|+|||||+.++ +.+|.++|+ +.++. +...+..+...+. .... .
T Consensus 318 ----~a~~RLLLTGTPlqNn-----------l~ELwsLL~FL~P~~f~--s~~~F~~~f~~~~---------~~~~---~ 368 (1033)
T PLN03142 318 ----STNYRLLITGTPLQNN-----------LHELWALLNFLLPEIFS--SAETFDEWFQISG---------ENDQ---Q 368 (1033)
T ss_pred ----hcCcEEEEecCCCCCC-----------HHHHHHHHhcCCCCcCC--CHHHHHHHHcccc---------ccch---H
Confidence 3567899999999876 444554443 32222 1112211111100 0000 0
Q ss_pred hhhhhhhhhhchhHH-HHHHhHhhhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 000379 272 GKLEVSWSKFDASLS-KLQGSQLNCY---------KDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVL 341 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~-~l~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~ 341 (1604)
..+......+.+++. ++.......+ ..+...-+.+-..+... ....+...+.. ... +
T Consensus 369 e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k---~~~~l~~g~~~--~~L----l---- 435 (1033)
T PLN03142 369 EVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQK---DLDVVNAGGER--KRL----L---- 435 (1033)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHH---HHHHHhccccH--HHH----H----
Confidence 111111111112221 1111111000 01111111110000000 00000000000 000 0
Q ss_pred hhHHHHHHHHHhhHHHH-HHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEE
Q 000379 342 KAQEECEIYRQSSLQCK-YFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIF 420 (1604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIF 420 (1604)
.........|. .++ +....+. ............+.|+..|.++|.... ..+.|+|||
T Consensus 436 ------nilmqLRk~cnHP~L------~~~~ep~---------~~~~~~e~lie~SgKl~lLdkLL~~Lk-~~g~KVLIF 493 (1033)
T PLN03142 436 ------NIAMQLRKCCNHPYL------FQGAEPG---------PPYTTGEHLVENSGKMVLLDKLLPKLK-ERDSRVLIF 493 (1033)
T ss_pred ------HHHHHHHHHhCCHHh------hhccccc---------CcccchhHHhhhhhHHHHHHHHHHHHH-hcCCeEEee
Confidence 00000000000 000 0000000 000000001123789999999887765 456799999
Q ss_pred EchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC---CceEEEEccccccccCCCCccEEE
Q 000379 421 VERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG---KVNLLFATDVIEEGMHVPNCSYVI 497 (1604)
Q Consensus 421 v~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g---~~~iLIaT~vleeGIDip~~nlVI 497 (1604)
++...+...|.++|.. .++.+..++|. ++..+|..++++|+.. ..-+|++|.++++|||++.|+.||
T Consensus 494 SQft~~LdiLed~L~~----~g~~y~rIdGs------ts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI 563 (1033)
T PLN03142 494 SQMTRLLDILEDYLMY----RGYQYCRIDGN------TGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI 563 (1033)
T ss_pred hhHHHHHHHHHHHHHH----cCCcEEEECCC------CCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE
Confidence 9999999999999976 47788899998 7899999999999763 346789999999999999999999
Q ss_pred EcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 498 RFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 498 ~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
+||++||+....|+.|||.|.|++ ++.|+..+..++
T Consensus 564 iyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 564 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred EeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999999999999999999986 666777777664
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=284.04 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=169.8
Q ss_pred HHHHHhcccCCCCCChHHHHHhhccCCCCC-----CCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhch
Q 000379 1044 LREEINCHSRNFHIPSSLILEALTTLGCCE-----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCN 1118 (1604)
Q Consensus 1044 l~~~l~~~~~~~~~~~~lll~AlT~~s~~~-----~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N 1118 (1604)
|++.|+|.|.| ++++.+||||+|+.. ..||||||||||++|+++++.++|.+||+.++|.|+.+|+.+|||
T Consensus 1 ~e~~lgy~F~~----~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn 76 (220)
T TIGR02191 1 LEKRLGYKFKN----KELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSE 76 (220)
T ss_pred ChHHhCCCcCC----HHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCH
Confidence 46789999988 999999999999864 349999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhH
Q 000379 1119 STLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIA 1198 (1604)
Q Consensus 1119 ~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lA 1198 (1604)
.+|+.+|.++||++||+..+ +.. .
T Consensus 77 ~~la~~a~~~gl~~~i~~~~---------~~~------------------------------------~----------- 100 (220)
T TIGR02191 77 ESLAEVARELGLGKFLLLGK---------GEE------------------------------------K----------- 100 (220)
T ss_pred HHHHHHHHHCCcHHHhccCc---------hHh------------------------------------h-----------
Confidence 99999999999999998542 000 0
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHccC
Q 000379 1199 DCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITHA 1278 (1604)
Q Consensus 1199 DvvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~ 1278 (1604)
T Consensus 101 -------------------------------------------------------------------------------- 100 (220)
T TIGR02191 101 -------------------------------------------------------------------------------- 100 (220)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHh
Q 000379 1279 SVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP 1358 (1604)
Q Consensus 1279 S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~ 1358 (1604)
......+|+++|+|||++||||+|+|+ +.+++|+..
T Consensus 101 ------------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~ 136 (220)
T TIGR02191 101 ------------------------------------------SGGRRRESILADAFEALIGAIYLDSGL--EAARKFILK 136 (220)
T ss_pred ------------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 000224677888888888888888874 777788777
Q ss_pred hhccccCC---CCCCCCchHHHHHHHHhcCCcce-eeee-eeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHH
Q 000379 1359 ILSPIVTP---DKLELPPLRELIELCDSLGYFVK-ENCT-LKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQ 1431 (1604)
Q Consensus 1359 ~l~~~i~~---~~~~~~p~~~L~e~~~~~~~~~~-~~~~-~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~ 1431 (1604)
++.|.+.. .....||++.|+|+|++.+...+ +.+. ..|+. +.|.|.|+++|. ..++|.|.|||+||+.||+.
T Consensus 137 ~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~-~~~~g~g~skk~A~~~AA~~ 215 (220)
T TIGR02191 137 LLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGE-PYGEGKGKSKKEAEQNAAKA 215 (220)
T ss_pred HHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHHH
Confidence 77776543 33557999999999998766544 4333 33543 689999999985 89999999999999999999
Q ss_pred HHHHh
Q 000379 1432 LLKKL 1436 (1604)
Q Consensus 1432 AL~~L 1436 (1604)
||++|
T Consensus 216 Al~~l 220 (220)
T TIGR02191 216 ALEKL 220 (220)
T ss_pred HHHhC
Confidence 99875
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-28 Score=318.81 Aligned_cols=314 Identities=18% Similarity=0.217 Sum_probs=200.8
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHh-------hCCCCeEEEEEecChhhHHHHHHHHHh---------------hcCCcE
Q 000379 64 AVLETGAGKTMIAVMLIKDIAQAIK-------SNGFKKLIIFLAPTVHLVHQQYDVIRV---------------HTDFEV 121 (1604)
Q Consensus 64 v~~~TGsGKTliailli~~~~~~~~-------~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---------------~~~~~v 121 (1604)
|++|||||||++|.+++...+.... ....+.++|||+|+++|+.|+.+.++. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999996655442111 012346799999999999999998864 236789
Q ss_pred EEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-CcCccceeEEEEeCcccccCCC---hHHHHHHHHHhhc
Q 000379 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-FLSLDIVCFIVIDECHHATGNH---PYTKIMKEFYHKS 197 (1604)
Q Consensus 122 ~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-~~~l~~i~llI~DEaH~~~~~~---~~~~im~~~~~~~ 197 (1604)
...+|+...+. ......+.++|||+||+.|..++.+. ...++++++||+||+|.+.+.. .+...+..+....
T Consensus 81 ~vrtGDt~~~e----R~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQE----RSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHH----HHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 99999876543 22223347899999999998887653 3468999999999999998642 3444555554445
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCc--eeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ--VFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~--i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
...++++|||||... ..++.+.|... +..+... ..++....+.+.....
T Consensus 157 ~~~~QrIgLSATI~n-------------~eevA~~L~g~~pv~Iv~~~------~~r~~~l~v~vp~~d~---------- 207 (1490)
T PRK09751 157 HTSAQRIGLSATVRS-------------ASDVAAFLGGDRPVTVVNPP------AMRHPQIRIVVPVANM---------- 207 (1490)
T ss_pred CCCCeEEEEEeeCCC-------------HHHHHHHhcCCCCEEEECCC------CCcccceEEEEecCch----------
Confidence 567899999999642 23344444321 1111000 0000000000000000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
.. +..... ..+ .
T Consensus 208 ----------~~--------~~~~~~---------------------~~~----------------------~------- 219 (1490)
T PRK09751 208 ----------DD--------VSSVAS---------------------GTG----------------------E------- 219 (1490)
T ss_pred ----------hh--------cccccc---------------------ccc----------------------c-------
Confidence 00 000000 000 0
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHH-HHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHH
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL-HELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFV 434 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~-~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L 434 (1604)
... . .. .....+.+ ..+++.+. ...++||||++|..|+.+...|
T Consensus 220 -------~~~--------~--------------~r-~~~i~~~v~~~il~~i~-----~~~stLVFvNSR~~AE~La~~L 264 (1490)
T PRK09751 220 -------DSH--------A--------------GR-EGSIWPYIETGILDEVL-----RHRSTIVFTNSRGLAEKLTARL 264 (1490)
T ss_pred -------ccc--------h--------------hh-hhhhhHHHHHHHHHHHh-----cCCCEEEECCCHHHHHHHHHHH
Confidence 000 0 00 00000000 11222221 1247999999999999999988
Q ss_pred hhCCC---------------C--------------CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccc
Q 000379 435 KKVPF---------------L--------------THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE 485 (1604)
Q Consensus 435 ~~~~~---------------~--------------~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vle 485 (1604)
++... + ..+.+..+||. |++++|..++++|++|++++||||++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs------LSkeeR~~IE~~fK~G~LrvLVATssLE 338 (1490)
T PRK09751 265 NELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS------VSKEQRAITEQALKSGELRCVVATSSLE 338 (1490)
T ss_pred HHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc------CCHHHHHHHHHHHHhCCceEEEeCcHHH
Confidence 76310 0 01224566777 9999999999999999999999999999
Q ss_pred cccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 486 EGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 486 eGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.||||+++++||+||.|.++.+|+||+|||||..
T Consensus 339 LGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 339 LGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999974
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=283.26 Aligned_cols=342 Identities=21% Similarity=0.266 Sum_probs=241.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHh--hCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIK--SNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~--~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
..-.|.+.|.+++.-++. +++++++|||+|||+.+.++|...+.... ....+-+++|+.||++|+.|.+.+++.+.
T Consensus 155 ~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 345799999999998874 99999999999999999999887775333 22445679999999999999999999865
Q ss_pred ----CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC--cCccceeEEEEeCcccccCCChHHHHHH
Q 000379 118 ----DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF--LSLDIVCFIVIDECHHATGNHPYTKIMK 191 (1604)
Q Consensus 118 ----~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~im~ 191 (1604)
++++..+........... ......++|+|.||-.+...+..+. +.+..+..+|+||++.+.....+.....
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a---~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla 311 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPA---FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLA 311 (593)
T ss_pred CCCCchhhhhcccccchhhccc---hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHH
Confidence 344444444322221000 1112357999999999999988775 7889999999999999987634444444
Q ss_pred HHHhhc-CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccch
Q 000379 192 EFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 192 ~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
..|... .+.-++=.+|||-.. .+++.....-..+-..++.. +. .
T Consensus 312 ~I~sac~s~~i~~a~FSat~~~--------~VEE~~~~i~~~~~~vivg~--~~--------------------s----- 356 (593)
T KOG0344|consen 312 DIYSACQSPDIRVALFSATISV--------YVEEWAELIKSDLKRVIVGL--RN--------------------S----- 356 (593)
T ss_pred HHHHHhcCcchhhhhhhccccH--------HHHHHHHHhhccceeEEEec--ch--------------------h-----
Confidence 444433 333455566777321 11111111111000000000 00 0
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
T Consensus 357 -------------------------------------------------------------------------------- 356 (593)
T KOG0344|consen 357 -------------------------------------------------------------------------------- 356 (593)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
....+.+.+. . -+....|+..+.+++..- -...++|||++...|..|
T Consensus 357 -------------a~~~V~Qelv-------F----------~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 357 -------------ANETVDQELV-------F----------CGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQL 403 (593)
T ss_pred -------------Hhhhhhhhhe-------e----------eecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHH
Confidence 0000000000 0 011245677777777653 234799999999999999
Q ss_pred HHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHH
Q 000379 431 ERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQ 510 (1604)
Q Consensus 431 ~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQ 510 (1604)
+..|.. +.++.+.++||. .++.+|.+++++||.|++.+||||+++++|||+.++|+||+||.|.+..+|+|
T Consensus 404 ~~~L~~---~~~i~v~vIh~e------~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syih 474 (593)
T KOG0344|consen 404 FEELEI---YDNINVDVIHGE------RSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIH 474 (593)
T ss_pred HHHhhh---ccCcceeeEecc------cchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHH
Confidence 999863 468899999998 78999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCc--eEEEEEeccCHHHHHHHHHHHHH
Q 000379 511 SRGRARQHNS--QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 511 r~GRA~R~gs--~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|+||+||+|. +.|.|+++.+..-.+.+.+.++.
T Consensus 475 rIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 475 RIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred HhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 9999999994 58999988777766666666543
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=298.87 Aligned_cols=323 Identities=18% Similarity=0.188 Sum_probs=229.9
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHh--hCCCCeEEEEEecChhhHHHHHHHHHh---h
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIK--SNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~--~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~ 116 (1604)
.-+|++.|.++++.+. ++|++|.+|||||||.+|++++...+.... ....+-.+|++.|.++|.+.+...++. .
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 4579999999999997 599999999999999999998877665331 122345799999999999999888876 4
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHHHH---HH
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKI---MK 191 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~i---m~ 191 (1604)
+|+.+..-+|++.... .-+...+-++|+|+||+.|.-++... .-.+.++..+|+||.|.+..+.-..++ +.
T Consensus 100 ~G~~v~vRhGDT~~~e----r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le 175 (814)
T COG1201 100 LGIEVAVRHGDTPQSE----KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE 175 (814)
T ss_pred cCCccceecCCCChHH----hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH
Confidence 6899988888765332 22333457899999999998777653 234688999999999999866333322 23
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCc-----eeeccchhhhhhccCCcceeeeeccCCCcc
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ-----VFTIEDKTEMEVFVPSAKESCRFYDQSKFC 266 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~-----i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 266 (1604)
.+..... .++++|||||... ..++.++|... +..+.. .++-+..+.......
T Consensus 176 RL~~l~~-~~qRIGLSATV~~-------------~~~varfL~g~~~~~~Iv~~~~--------~k~~~i~v~~p~~~~- 232 (814)
T COG1201 176 RLRELAG-DFQRIGLSATVGP-------------PEEVAKFLVGFGDPCEIVDVSA--------AKKLEIKVISPVEDL- 232 (814)
T ss_pred HHHhhCc-ccEEEeehhccCC-------------HHHHHHHhcCCCCceEEEEccc--------CCcceEEEEecCCcc-
Confidence 2222233 7999999999642 23444444321 111000 000000000000000
Q ss_pred ccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 000379 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1604)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 346 (1604)
. |.
T Consensus 233 ---------------------------------~--------------------------~~------------------ 235 (814)
T COG1201 233 ---------------------------------I--------------------------YD------------------ 235 (814)
T ss_pred ---------------------------------c--------------------------cc------------------
Confidence 0 00
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHH
Q 000379 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIA 426 (1604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~t 426 (1604)
......-...+.++++++. .+|||+|+|.+
T Consensus 236 ---------------------------------------------~~~~~~~~~~i~~~v~~~~-----ttLIF~NTR~~ 265 (814)
T COG1201 236 ---------------------------------------------EELWAALYERIAELVKKHR-----TTLIFTNTRSG 265 (814)
T ss_pred ---------------------------------------------cchhHHHHHHHHHHHhhcC-----cEEEEEeChHH
Confidence 0001123344555555543 68999999999
Q ss_pred HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHH
Q 000379 427 AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS 506 (1604)
Q Consensus 427 a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~ 506 (1604)
|+.+...|++.. ...+...||+ ++.+.|.++.++|++|+++++|||+.+|-|||+.++++||+|..|.++.
T Consensus 266 aE~l~~~L~~~~---~~~i~~HHgS------lSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~ 336 (814)
T COG1201 266 AERLAFRLKKLG---PDIIEVHHGS------LSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVN 336 (814)
T ss_pred HHHHHHHHHHhc---CCceeeeccc------ccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHH
Confidence 999999998852 2567777887 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccC---ceEEEEEec
Q 000379 507 SYIQSRGRARQHN---SQFILMLER 528 (1604)
Q Consensus 507 syiQr~GRA~R~g---s~~i~~v~~ 528 (1604)
.++||+||+|+.- |+.+++..+
T Consensus 337 r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 337 RFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHhHhccccccccCCcccEEEEecC
Confidence 9999999998865 566666543
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=300.65 Aligned_cols=303 Identities=17% Similarity=0.210 Sum_probs=200.2
Q ss_pred CCCCcHHHHHHHHHhhc-c-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 43 NFIPRIYQLKVFEVAKR-R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
.++|+|||.++++.++. + ++++.+|||||||.++...+..+.. .....++++|+|||++|+.|.+++++++.
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccc---cccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 46699999999999985 4 4777899999999865433222211 12234467778899999999999988754
Q ss_pred -----------------------CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcC---------
Q 000379 118 -----------------------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS--------- 165 (1604)
Q Consensus 118 -----------------------~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~--------- 165 (1604)
++++..++|+.+.+ ..|...-..++|||+|+ +++.++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~----~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~ 161 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN----DEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKS 161 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChH----HHHHhcCCCCcEEEECH----HHHcCCcccccccccccc
Confidence 26788899997654 35777777899999995 444455442
Q ss_pred -------ccceeEEEEeCcccccCCChHHHHHHHHHhhc--CC---CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc
Q 000379 166 -------LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DN---KPKVFGMTASPVVRKGVSSAMDCEGQISELESTL 233 (1604)
Q Consensus 166 -------l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~--~~---~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l 233 (1604)
++++++||+||||.. ..+...+..+.... +. ..++++||||+... +..+...+
T Consensus 162 ~pi~ag~L~~v~~LVLDEADLd---~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e------------i~~l~~~~ 226 (844)
T TIGR02621 162 RPLHAGFLGQDALIVHDEAHLE---PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTD------------GPDRTTLL 226 (844)
T ss_pred ccchhhhhccceEEEEehhhhc---cccHHHHHHHHHhcccCcccccceEEEEecCCCcc------------HHHHHHHH
Confidence 678999999999932 25666666665532 22 14899999997421 11121111
Q ss_pred CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHH
Q 000379 234 DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDY 313 (1604)
Q Consensus 234 ~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (1604)
.. .|....+. .... .
T Consensus 227 ~~----------------~p~~i~V~--~~~l---------~-------------------------------------- 241 (844)
T TIGR02621 227 SA----------------EDYKHPVL--KKRL---------A-------------------------------------- 241 (844)
T ss_pred cc----------------CCceeecc--cccc---------c--------------------------------------
Confidence 10 00000000 0000 0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccC
Q 000379 314 HAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLG 393 (1604)
Q Consensus 314 ~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1604)
...+.... ..
T Consensus 242 ---------------------------------------------------a~ki~q~v-------------------~v 251 (844)
T TIGR02621 242 ---------------------------------------------------AKKIVKLV-------------------PP 251 (844)
T ss_pred ---------------------------------------------------ccceEEEE-------------------ec
Confidence 00000000 00
Q ss_pred CCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHH-----HHHH
Q 000379 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQK-----EVLE 468 (1604)
Q Consensus 394 ~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~-----~vl~ 468 (1604)
....|+..++..+.........++||||+++..|..+++.|.+. ++ ..+||. |++.+|. .+++
T Consensus 252 ~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~----g~--~lLHG~------m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE----KF--ELLTGT------LRGAERDDLVKKEIFN 319 (844)
T ss_pred ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc----CC--eEeeCC------CCHHHHhhHHHHHHHH
Confidence 00112222222221111123468999999999999999999873 33 789999 9999999 8899
Q ss_pred HHhC----CC-------ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 469 SFRG----GK-------VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 469 ~Fr~----g~-------~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
+|++ |+ .+|||||+++|+||||+. ++||+++.| ..+|+||+||++|.|..
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 9987 54 789999999999999986 889988766 58999999999999863
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=284.00 Aligned_cols=316 Identities=18% Similarity=0.296 Sum_probs=228.4
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
..|+-|.++++.++ ++|+|+.+|||.||+++|.++..-+ .+.+|+|.|..+|+..|.+.++.. |+.+..
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~ 86 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEAA-GIRAAY 86 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHHc-Cceeeh
Confidence 45889999999998 5999999999999999999986532 236999999999999999999854 588888
Q ss_pred EECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHHHHH--hhcCC
Q 000379 124 YYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFY--HKSDN 199 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~~~~--~~~~~ 199 (1604)
+.+..+.+.|. ..|.... ...+++.-+|+.|.+......+....+.++|+||||+++.+ |.|+.-...+- +..-+
T Consensus 87 lnS~l~~~e~~-~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~ 165 (590)
T COG0514 87 LNSTLSREERQ-QVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP 165 (590)
T ss_pred hhcccCHHHHH-HHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC
Confidence 88877766643 3344443 45899999999997665555555678899999999999866 44433222221 12224
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCc---eee-ccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQ---VFT-IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~---i~t-~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.+.+++||||-.. ....++.+.|+.. ++. .-+|+.+ +|. +.
T Consensus 166 ~~p~~AlTATA~~-----------~v~~DI~~~L~l~~~~~~~~sfdRpNi------------~~~------------v~ 210 (590)
T COG0514 166 NPPVLALTATATP-----------RVRDDIREQLGLQDANIFRGSFDRPNL------------ALK------------VV 210 (590)
T ss_pred CCCEEEEeCCCCh-----------HHHHHHHHHhcCCCcceEEecCCCchh------------hhh------------hh
Confidence 7899999998432 1123333333221 110 0011110 000 00
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
T Consensus 211 -------------------------------------------------------------------------------- 210 (590)
T COG0514 211 -------------------------------------------------------------------------------- 210 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
. .. +++.+.+ .+..........+||||.+|..++.+++.|.
T Consensus 211 --------------~---------------------~~--~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~ 251 (590)
T COG0514 211 --------------E---------------------KG--EPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLR 251 (590)
T ss_pred --------------h---------------------cc--cHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHH
Confidence 0 00 0000000 1111111334568999999999999999999
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
. .++++..+||+ |+..+|+.+.++|..+++.|+|||.+.+.|||-|++..|||||+|.|+.+|.|-.|||
T Consensus 252 ~----~g~~a~~YHaG------l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 252 K----NGISAGAYHAG------LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred H----CCCceEEecCC------CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 8 48999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc--eEEEEEeccCHHHHH
Q 000379 516 RQHNS--QFILMLERGNLKQRN 535 (1604)
Q Consensus 516 ~R~gs--~~i~~v~~~~~~~~~ 535 (1604)
||.|. ..++++.++|....+
T Consensus 322 GRDG~~a~aill~~~~D~~~~~ 343 (590)
T COG0514 322 GRDGLPAEAILLYSPEDIRWQR 343 (590)
T ss_pred cCCCCcceEEEeeccccHHHHH
Confidence 99995 588888877765433
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-28 Score=299.79 Aligned_cols=332 Identities=22% Similarity=0.291 Sum_probs=236.1
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHH--hhCCCCeEEEEEecChhhHHHHHHHHHhh---c
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI--KSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~--~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~ 117 (1604)
-.|+++|..|++.++ ++++|.++.||||||+.+++++..+.... ...+.++.++|++||++|+.|+.+.++.+ +
T Consensus 386 ~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l 465 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL 465 (997)
T ss_pred CCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 379999999999997 69999999999999999988776544311 13566889999999999999999998876 4
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc---CcCccceeEEEEeCcccccCC--Ch-HHHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA---FLSLDIVCFIVIDECHHATGN--HP-YTKIMK 191 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~---~~~l~~i~llI~DEaH~~~~~--~~-~~~im~ 191 (1604)
++++..+||+.+... ....+-.++.|+||||+++++.+-.+ ..++.++..+|+|||+++..- .| ..+|++
T Consensus 466 ~ir~v~vygg~~~~~----qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~ 541 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQ----QIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQ 541 (997)
T ss_pred CceEEEecCCccHHH----HHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHh
Confidence 899999999876543 23344457999999999999987544 345666779999999999621 11 011222
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchh
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLK 271 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~ 271 (1604)
. ..+-.+.+..|||-. ..+..|.. .....|.+..+-+....
T Consensus 542 n----lrpdrQtvlfSatfp------------r~m~~la~----------------~vl~~Pveiiv~~~svV------- 582 (997)
T KOG0334|consen 542 N----LRPDRQTVLFSATFP------------RSMEALAR----------------KVLKKPVEIIVGGRSVV------- 582 (997)
T ss_pred h----cchhhhhhhhhhhhh------------HHHHHHHH----------------HhhcCCeeEEEccceeE-------
Confidence 1 112223344444411 00110000 00012222111110000
Q ss_pred hhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000379 272 GKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR 351 (1604)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1604)
T Consensus 583 -------------------------------------------------------------------------------- 582 (997)
T KOG0334|consen 583 -------------------------------------------------------------------------------- 582 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHH
Q 000379 352 QSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVE 431 (1604)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~ 431 (1604)
...+.+.+ .--.....|+..|.++|..+.. +.++||||.....|..|.
T Consensus 583 -------------~k~V~q~v-----------------~V~~~e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~ 630 (997)
T KOG0334|consen 583 -------------CKEVTQVV-----------------RVCAIENEKFLKLLELLGERYE--DGKTIIFVDKQEKADALL 630 (997)
T ss_pred -------------eccceEEE-----------------EEecCchHHHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHH
Confidence 00000000 0011236799999999987753 679999999999999999
Q ss_pred HHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHH
Q 000379 432 RFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511 (1604)
Q Consensus 432 ~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr 511 (1604)
+-|.+ .++.|..+||. .++.+|..++.+||+|.+++||||+++++|+|++...+||+||.|.....|+||
T Consensus 631 ~~L~~----ag~~~~slHGg------v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR 700 (997)
T KOG0334|consen 631 RDLQK----AGYNCDSLHGG------VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHR 700 (997)
T ss_pred HHHHh----cCcchhhhcCC------CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHH
Confidence 99987 57888889998 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCce--EEEEEeccCHHHHHHHHHH
Q 000379 512 RGRARQHNSQ--FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 512 ~GRA~R~gs~--~i~~v~~~~~~~~~~l~~~ 540 (1604)
.||+||.|.+ .++|+.+.+.+-.-.|.+.
T Consensus 701 ~gRTgragrkg~AvtFi~p~q~~~a~dl~~a 731 (997)
T KOG0334|consen 701 VGRTGRAGRKGAAVTFITPDQLKYAGDLCKA 731 (997)
T ss_pred hcccccCCccceeEEEeChHHhhhHHHHHHH
Confidence 9999998864 7788876444433333333
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=298.63 Aligned_cols=321 Identities=21% Similarity=0.281 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH--hhcCCc
Q 000379 45 IPRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR--VHTDFE 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~--~~~~~~ 120 (1604)
++.+.|++++.... ++|+||++|||+|||++|.+.|...+. . .+.+++++||+++|+.|.+++++ ..+|++
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~----~-~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL----E-GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH----h-cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 88999999998875 499999999999999999998887665 1 24569999999999999999999 568999
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--hH-HHHHHHHHhhc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PY-TKIMKEFYHKS 197 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~-~~im~~~~~~~ 197 (1604)
|.+.+|+...+. ..+..++|+|+|||.+-..+++....+..+++||+||+|.+.+.. |. -.|.... +..
T Consensus 106 V~~~TgD~~~~~-------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~-~~~ 177 (766)
T COG1204 106 VGISTGDYDLDD-------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARM-RRL 177 (766)
T ss_pred EEEecCCcccch-------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHH-Hhh
Confidence 999999876442 345689999999999999998887788999999999999997652 21 1222221 122
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~ 277 (1604)
....||+|||||..+ ..++-.++++...... +.+-|-...+.|......
T Consensus 178 ~~~~rivgLSATlpN-------------~~evA~wL~a~~~~~~-------~rp~~l~~~v~~~~~~~~----------- 226 (766)
T COG1204 178 NELIRIVGLSATLPN-------------AEEVADWLNAKLVESD-------WRPVPLRRGVPYVGAFLG----------- 226 (766)
T ss_pred CcceEEEEEeeecCC-------------HHHHHHHhCCcccccC-------CCCcccccCCccceEEEE-----------
Confidence 233799999999643 4677778876533110 111110000000000000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
...+
T Consensus 227 ---------------------~~~~------------------------------------------------------- 230 (766)
T COG1204 227 ---------------------ADGK------------------------------------------------------- 230 (766)
T ss_pred ---------------------ecCc-------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh-
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK- 436 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~- 436 (1604)
.+ . .........+..++... ..+.+++|||++|..+...++.+..
T Consensus 231 -----------------------------~k-~--~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~ 276 (766)
T COG1204 231 -----------------------------KK-T--WPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIK 276 (766)
T ss_pred -----------------------------cc-c--ccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHH
Confidence 00 0 00000111111112222 3456899999999988777777662
Q ss_pred ---C------CCCCC----ee-------------EEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCC
Q 000379 437 ---V------PFLTH----LT-------------VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHV 490 (1604)
Q Consensus 437 ---~------~~~~~----~~-------------~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDi 490 (1604)
. +.... +. -....|-..++.+|+.++|.-+.+.||.|.++||+||+.++.|+|+
T Consensus 277 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNL 356 (766)
T COG1204 277 MSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNL 356 (766)
T ss_pred HhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCC
Confidence 1 00000 00 1112344445678999999999999999999999999999999999
Q ss_pred CCccEEE----EcC-----CCCCHHHHHHHhhhhcccC
Q 000379 491 PNCSYVI----RFD-----LPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 491 p~~nlVI----~fD-----~p~s~~syiQr~GRA~R~g 519 (1604)
|+-.+|| +|| .+-+.-+++|+.|||||.|
T Consensus 357 PA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 357 PARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred cceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 9877777 577 5568889999999999998
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=271.28 Aligned_cols=415 Identities=19% Similarity=0.223 Sum_probs=257.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 37 SSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 37 ~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
++.......+|+||.+.+.++. +-|+|+++++|.|||+..|.++-++.. ..+-.+..+|+||...| .+|.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~---~~~~~GPfLVi~P~StL-~NW~~ 234 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKG---RKGIPGPFLVIAPKSTL-DNWMN 234 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHH---hcCCCCCeEEEeeHhhH-HHHHH
Confidence 3444455789999999999985 478999999999999999998877654 22323337999999777 67999
Q ss_pred HHHhhc-CCcEEEEECCCCCCccchhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHH
Q 000379 112 VIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYT 187 (1604)
Q Consensus 112 ~i~~~~-~~~v~~~~G~~~~~~~~~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~ 187 (1604)
+|++++ ++++..++|+..- .....+..+ ...+|+|+||++.++. +.++.--.|.++|+||||++.+. .-..
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~e---R~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEE---RAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred HHHHhCCCcceEEEeCCHHH---HHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHH
Confidence 999999 5899999997521 112222222 3689999999999765 34555567999999999999865 3456
Q ss_pred HHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC---ceeeccchhhhhhccCCcceeeeeccCCC
Q 000379 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKESCRFYDQSK 264 (1604)
Q Consensus 188 ~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 264 (1604)
+++++| ..+..|++|+||.+++ +.+|.++|+- -+|+ +.+.+..+...- ..
T Consensus 310 ~~lr~f-----~~~nrLLlTGTPLQNN-----------L~ELWaLLnFllPdiF~--~~e~F~swF~~~---------~~ 362 (971)
T KOG0385|consen 310 KILREF-----KTDNRLLLTGTPLQNN-----------LHELWALLNFLLPDIFN--SAEDFDSWFDFT---------NC 362 (971)
T ss_pred HHHHHh-----cccceeEeeCCccccc-----------HHHHHHHHHhhchhhcc--CHHHHHHHHccc---------cc
Confidence 778877 5788999999999886 6778777752 1121 112222221110 00
Q ss_pred ccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHH--HHHH
Q 000379 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDEL----GLICAYEAVK--ICLE 338 (1604)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l----G~~~~~~~~~--~~~~ 338 (1604)
.....+...+.... .+++.+- ++.......---.++ |.....+-+. ....
T Consensus 363 ~~~~e~v~~Lh~vL---~pFlLRR---------------------~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~k 418 (971)
T KOG0385|consen 363 EGDQELVSRLHKVL---RPFLLRR---------------------IKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMK 418 (971)
T ss_pred ccCHHHHHHHHhhh---hHHHHHH---------------------HHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHh
Confidence 00000011111111 1111100 000000000000000 0000000000 0000
Q ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCc----ccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000379 339 KVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDY----SKAVDLGYISTKLHELLQLFLSFGKSTQ 414 (1604)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~K~~~L~~lL~~~~~~~~ 414 (1604)
.+.....+. ...+..+.++.-++...+... ..-.+... ......-.-|.|+..|-++|.... ..+
T Consensus 419 dl~~~n~~~-------~~~k~kL~NI~mQLRKccnHP---YLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk-~~G 487 (971)
T KOG0385|consen 419 DLDALNGEG-------KGEKTKLQNIMMQLRKCCNHP---YLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLK-EQG 487 (971)
T ss_pred cchhhcccc-------cchhhHHHHHHHHHHHhcCCc---cccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHH-hCC
Confidence 010000000 001122223333333222111 00000000 000111234789999999987765 567
Q ss_pred cEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC---ceEEEEccccccccCCC
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---VNLLFATDVIEEGMHVP 491 (1604)
Q Consensus 415 ~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~---~~iLIaT~vleeGIDip 491 (1604)
.|++||.+-..+.+.|.+++.- +++....+.|. ++.++|...++.|.... +-+|++|.+++-|||+.
T Consensus 488 hRVLIFSQmt~mLDILeDyc~~----R~y~ycRiDGS------t~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 488 HRVLIFSQMTRMLDILEDYCML----RGYEYCRLDGS------TSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred CeEEEeHHHHHHHHHHHHHHHh----cCceeEeecCC------CCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 8999999998888888888754 68889999998 78999999999998754 44689999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHH
Q 000379 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLK 532 (1604)
Q Consensus 492 ~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~ 532 (1604)
.++.||.||..||+..-.|...||+|.|++ ++-|++....+
T Consensus 558 aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 558 AADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999985 55566665554
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=263.13 Aligned_cols=328 Identities=21% Similarity=0.294 Sum_probs=243.3
Q ss_pred CCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~~ 119 (1604)
-+|...|+.|+..+. +.|+++.+++|+|||.++...+++.+. .......+++++|+++|+.|..++.+.. .+.
T Consensus 47 ekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD---~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 47 EKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID---MSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC---cchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 468999999987665 699999999999999998888877653 1223345899999999999999887764 367
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
++..+.|+.+..... -......++|+|+||+...+.+..+.+....+.+.|+||++.+... .+...+.......+.
T Consensus 124 ~v~~~igg~~~~~~~---~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~-gfkdqI~~if~~lp~ 199 (397)
T KOG0327|consen 124 SVHACIGGTNVRRED---QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSR-GFKDQIYDIFQELPS 199 (397)
T ss_pred eeeeecCcccchhhh---hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhcc-chHHHHHHHHHHcCc
Confidence 888888877654211 1222346899999999999999999999999999999999999765 555555556666677
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..+++.+|||-.. .+..+-. ++...|....+.++..
T Consensus 200 ~vQv~l~SAT~p~------------~vl~vt~----------------~f~~~pv~i~vkk~~l---------------- 235 (397)
T KOG0327|consen 200 DVQVVLLSATMPS------------DVLEVTK----------------KFMREPVRILVKKDEL---------------- 235 (397)
T ss_pred chhheeecccCcH------------HHHHHHH----------------HhccCceEEEecchhh----------------
Confidence 7899999999431 1111111 1111121111111000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
T Consensus 236 -------------------------------------------------------------------------------- 235 (397)
T KOG0327|consen 236 -------------------------------------------------------------------------------- 235 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
.++-+.++.... . -.+|+..|.++... -...+|||+++.-+..|...|..
T Consensus 236 ----tl~gikq~~i~v-------~-----------k~~k~~~l~dl~~~-----~~q~~if~nt~r~v~~l~~~L~~--- 285 (397)
T KOG0327|consen 236 ----TLEGIKQFYINV-------E-----------KEEKLDTLCDLYRR-----VTQAVIFCNTRRKVDNLTDKLRA--- 285 (397)
T ss_pred ----hhhheeeeeeec-------c-----------ccccccHHHHHHHh-----hhcceEEecchhhHHHHHHHHhh---
Confidence 000000000000 0 01277777777762 23689999999999999999966
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||. |.+.+|..+++.|+.|..+|||+|+.+++|||+..|.+|||||.|.+..+|+||+||+||.|
T Consensus 286 -~~~~~s~~~~d------~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 286 -HGFTVSAIHGD------MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFG 358 (397)
T ss_pred -CCceEEEeecc------cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccC
Confidence 47899999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ce--EEEEEeccCHHHHHHHHH
Q 000379 520 SQ--FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 520 s~--~i~~v~~~~~~~~~~l~~ 539 (1604)
.+ .+.|++..+......+++
T Consensus 359 rkg~~in~v~~~d~~~lk~ie~ 380 (397)
T KOG0327|consen 359 RKGVAINFVTEEDVRDLKDIEK 380 (397)
T ss_pred CCceeeeeehHhhHHHHHhHHH
Confidence 76 677777666655555553
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=302.68 Aligned_cols=361 Identities=19% Similarity=0.277 Sum_probs=211.1
Q ss_pred CCCCcHHHHHHHHHhh------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 43 NFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
.+.+|+||.++++.+. +++++++|+||||||++++.++..++. .+..++||||||+++|+.|+.+.|+.+
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~----~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK----AKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh----cCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 3689999999998774 267999999999999999988877765 234467999999999999999999876
Q ss_pred cCC---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-----CcCccceeEEEEeCcccccCC-----
Q 000379 117 TDF---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----FLSLDIVCFIVIDECHHATGN----- 183 (1604)
Q Consensus 117 ~~~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-----~~~l~~i~llI~DEaH~~~~~----- 183 (1604)
... .+..+++...... . ..-...+|+|+|+|.|.+.+... ...+..+++||+|||||....
T Consensus 487 ~~~~~~~~~~i~~i~~L~~-----~-~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLED-----K-FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred ccccccchhhhhchhhhhh-----h-cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 311 1111222111010 0 01125799999999998765321 245688999999999997421
Q ss_pred -------------ChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhcc
Q 000379 184 -------------HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFV 250 (1604)
Q Consensus 184 -------------~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~ 250 (1604)
..|..++..| ....|||||||.... ...++..++..+..+.+..-.
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF------dA~~IGLTATP~r~t---------------~~~FG~pv~~Ysl~eAI~DG~ 619 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF------DAVKIGLTATPALHT---------------TEIFGEPVYTYSYREAVIDGY 619 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc------CccEEEEecCCccch---------------hHHhCCeeEEeeHHHHHhcCC
Confidence 2345555532 257899999997431 234455555555444443221
Q ss_pred CCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000379 251 PSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAY 330 (1604)
Q Consensus 251 ~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~ 330 (1604)
-.+.+....|.. .+....+ .++. ......|......++ ...+ ...+.+..
T Consensus 620 Lv~~~~p~~i~t-~~~~~gi---------~~~~------~e~~~~~~~~~~~i~--~~~l---~d~~~~~~--------- 669 (1123)
T PRK11448 620 LIDHEPPIRIET-RLSQEGI---------HFEK------GEEVEVINTQTGEID--LATL---EDEVDFEV--------- 669 (1123)
T ss_pred cccCcCCEEEEE-Eeccccc---------cccc------cchhhhcchhhhhhh--hccC---cHHHhhhH---------
Confidence 110000001100 0000000 0000 000000000000000 0000 00000000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhC
Q 000379 331 EAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG 410 (1604)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~ 410 (1604)
..+-..+... . ....-+..+.+.+..
T Consensus 670 ---------------------------~~~~~~vi~~--~-----------------------~~~~i~~~l~~~l~~-- 695 (1123)
T PRK11448 670 ---------------------------EDFNRRVITE--S-----------------------FNRVVCEELAKYLDP-- 695 (1123)
T ss_pred ---------------------------HHHHHHHhhH--H-----------------------HHHHHHHHHHHHHhc--
Confidence 0000000000 0 000011223333322
Q ss_pred CCCCcEEEEEEchHHHHHHHHHHHhhC-----CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc-eEEEEcccc
Q 000379 411 KSTQVLCIIFVERIIAAKVVERFVKKV-----PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV-NLLFATDVI 484 (1604)
Q Consensus 411 ~~~~~~~IIFv~~r~ta~~L~~~L~~~-----~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~-~iLIaT~vl 484 (1604)
....++||||.++.+|+.+.+.|... +...+..+..++|. ++ ++.+++++|+++.. +|+|+++++
T Consensus 696 -~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~------~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 696 -TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGS------ID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred -cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCC------cc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 22369999999999999988887653 22233345668887 22 45789999999987 699999999
Q ss_pred ccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC----ceEEEEEe
Q 000379 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN----SQFILMLE 527 (1604)
Q Consensus 485 eeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g----s~~i~~v~ 527 (1604)
.+|+|+|.|+.||.++++.|...|+|++||+.|.- ...+++++
T Consensus 767 ~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 767 TTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999999999999999999999999963 34444444
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=279.16 Aligned_cols=296 Identities=17% Similarity=0.175 Sum_probs=190.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCc----cch-
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDE----WDS- 135 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~----~~~- 135 (1604)
.++|.+|||+|||.++++++.+.+. .+...+++|++|+++|+.|+++.++..++..++.++|+..... .+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~----~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK----SQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh----hCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCch
Confidence 4789999999999999998887654 2345679999999999999999999988877777777543110 000
Q ss_pred ---hHHHH------hcCCCcEEEEcHHHHHHHHHhcC----cCcc--ceeEEEEeCcccccCCChHHHHHHHHHhh-cCC
Q 000379 136 ---QCWQK------EINKNDVLVMTPQILLDALRKAF----LSLD--IVCFIVIDECHHATGNHPYTKIMKEFYHK-SDN 199 (1604)
Q Consensus 136 ---~~w~~------~~~~~~ViV~T~q~Ll~~l~~~~----~~l~--~i~llI~DEaH~~~~~~~~~~im~~~~~~-~~~ 199 (1604)
..|.. ..-..+|+|+||+.+++.+.++. ..+. ..++|||||||.+... .+.. +...... ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~-l~~~l~~l~~~ 154 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLAL-ILAVLEVLKDN 154 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHHH-HHHHHHHHHHc
Confidence 01111 11246899999999988776532 1111 2378999999999753 1211 2222211 234
Q ss_pred CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 200 KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 200 ~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
..++++||||+. +.+..+...... .. .+ ..++.....
T Consensus 155 ~~~~i~~SATlp------------~~l~~~~~~~~~---~~-----------~~----~~~~~~~~~------------- 191 (358)
T TIGR01587 155 DVPILLMSATLP------------KFLKEYAEKIGY---VE-----------FN----EPLDLKEER------------- 191 (358)
T ss_pred CCCEEEEecCch------------HHHHHHHhcCCC---cc-----------cc----cCCCCcccc-------------
Confidence 678999999963 112211111100 00 00 000000000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
.+. . ..
T Consensus 192 ~~~----------~----------------------------------------------------------------~~ 197 (358)
T TIGR01587 192 RFE----------R----------------------------------------------------------------HR 197 (358)
T ss_pred ccc----------c----------------------------------------------------------------cc
Confidence 000 0 00
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
+ . ........|...+.+++.... .+.++||||+++..++.+++.|++..
T Consensus 198 ~-----------~-----------------~~~~~~~~~~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~- 246 (358)
T TIGR01587 198 F-----------I-----------------KIESDKVGEISSLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENA- 246 (358)
T ss_pred c-----------e-----------------eeccccccCHHHHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhc-
Confidence 0 0 000000122333334443322 24589999999999999999998641
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHH----HHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhh
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKE----VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~----vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA 515 (1604)
....+..+||. |++.+|.+ ++++|++|+.++||||+++++|||++ +++||+++.| +.+|+||.||+
T Consensus 247 -~~~~~~~~h~~------~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~ 316 (358)
T TIGR01587 247 -PEEEIMLLHSR------FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRL 316 (358)
T ss_pred -CCCeEEEEECC------CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccc
Confidence 23468899998 88888865 58999999999999999999999996 8999998766 78999999999
Q ss_pred cccCc
Q 000379 516 RQHNS 520 (1604)
Q Consensus 516 ~R~gs 520 (1604)
||.|.
T Consensus 317 gR~g~ 321 (358)
T TIGR01587 317 HRYGR 321 (358)
T ss_pred cCCCC
Confidence 99874
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=266.04 Aligned_cols=429 Identities=16% Similarity=0.158 Sum_probs=255.3
Q ss_pred CCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc-C
Q 000379 45 IPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-D 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-~ 118 (1604)
.+.+||++.++++. +...|+.+++|.|||...+..+..+.+.. .--+.+|||||. .++.||.+++.++. .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~w~p~ 280 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQTWWPP 280 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cccCceEEEccH-HHHHHHHHHHHHhCcc
Confidence 57899999999985 36789999999999998888877776621 112459999997 89999999999987 5
Q ss_pred CcEEEEECCCCC----CccchhHHHHhc-----CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC-hHHH
Q 000379 119 FEVEEYYGAKGV----DEWDSQCWQKEI-----NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTK 188 (1604)
Q Consensus 119 ~~v~~~~G~~~~----~~~~~~~w~~~~-----~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~ 188 (1604)
++|.++||..+. ..-....|+..+ ....|+++||..+.-. ...+.-..|+++|+||.|.+.+.. ....
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~isl 358 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSKISL 358 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccHHHH
Confidence 889999886552 111223344433 4568999999987422 223444568999999999998642 3334
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc---chhhhhhccCCcceeeeeccCCCc
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE---DKTEMEVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~---~~~~l~~~~~~p~e~~~~y~~~~~ 265 (1604)
.++++ ..+++|+||+||++|+ +.+|.+++|-. .|. ....+.....-|...--+-...+.
T Consensus 359 ackki-----~T~~RiILSGTPiQNn-----------L~ELwsLfDFv--~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~ 420 (923)
T KOG0387|consen 359 ACKKI-----RTVHRIILSGTPIQNN-----------LTELWSLFDFV--FPGKLGTLPVFQQNFEHPINRGGYANASPR 420 (923)
T ss_pred HHHhc-----cccceEEeeCccccch-----------HHHHHHHhhhc--cCCcccchHHHHhhhhhheeccccCCCCHH
Confidence 44443 5689999999999876 78888887732 221 112222211112111111111000
Q ss_pred cccchhhhhhhhhhhhchhHHHHHH-hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHhhh
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQG-SQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICL--EKVLK 342 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~--~~~~~ 342 (1604)
.-..-..-...+...+.+++.+-+. .... ..++++ ++.-+||.....+..+ .-+.
T Consensus 421 qv~~aykca~~Lr~lI~PylLRR~K~dv~~--~~Lp~K-------------------~E~VlfC~LT~~QR~~Y~~fl~- 478 (923)
T KOG0387|consen 421 QVQTAYKCAVALRDLISPYLLRRMKSDVKG--LKLPKK-------------------EEIVLFCRLTKLQRRLYQRFLN- 478 (923)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--ccCCCc-------------------cceEEEEeccHHHHHHHHHHhh-
Confidence 0000000000011111122111110 0000 001110 0111222111100000 0000
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhcccc-CCccc---ccccCCCCHHHHHHHHHHHhhCCCCCcEEE
Q 000379 343 AQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFG-FDYSK---AVDLGYISTKLHELLQLFLSFGKSTQVLCI 418 (1604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~---~~~~~~~s~K~~~L~~lL~~~~~~~~~~~I 418 (1604)
...-..... ....+..- ...+...+...+ +.... ..... .......+.|++.+..+|..+.. .+.++|
T Consensus 479 s~~v~~i~n-g~~~~l~G----i~iLrkICnHPd--ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvl 550 (923)
T KOG0387|consen 479 SSEVNKILN-GKRNCLSG----IDILRKICNHPD--LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVL 550 (923)
T ss_pred hHHHHHHHc-CCccceec----hHHHHhhcCCcc--cccCcccccccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEE
Confidence 000000000 00000000 000111111000 00000 00000 00122347899999999988874 445999
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc--eEEEEccccccccCCCCccEE
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV--NLLFATDVIEEGMHVPNCSYV 496 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~--~iLIaT~vleeGIDip~~nlV 496 (1604)
+|.+++.+.+.|..+|... .++.+..|.|.+ +...|...+++|.+++. -+|++|.|++-|+|+..+|-|
T Consensus 551 lFsqs~~mLdilE~fL~~~---~~ysylRmDGtT------~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRV 621 (923)
T KOG0387|consen 551 LFSQSRQMLDILESFLRRA---KGYSYLRMDGTT------PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRV 621 (923)
T ss_pred EehhHHHHHHHHHHHHHhc---CCceEEEecCCC------ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceE
Confidence 9999999999999999863 588999999984 78889999999998863 367899999999999999999
Q ss_pred EEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHH
Q 000379 497 IRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNK 536 (1604)
Q Consensus 497 I~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~ 536 (1604)
|.||+.||+..-.|.+-||.|.|++ ++-|+..|..++.-.
T Consensus 622 IIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY 665 (923)
T KOG0387|consen 622 IIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY 665 (923)
T ss_pred EEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH
Confidence 9999999999999999999999986 666778888876543
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=265.82 Aligned_cols=315 Identities=17% Similarity=0.237 Sum_probs=187.8
Q ss_pred HHHHHHHHhhcc---CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc-------C
Q 000379 49 YQLKVFEVAKRR---NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-------D 118 (1604)
Q Consensus 49 yQ~e~l~~~l~~---n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-------~ 118 (1604)
||.++++.+.+. ++++++|||+|||.++++++.. .+.+++|++|+++|++||++.++.++ +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 699999999853 3788999999999999887653 12347999999999999999999876 4
Q ss_pred CcEEEEECCCCCC--ccc--------hh----HHHH--hcCCCcEEEEcHHHHHHHHHhcCc--------CccceeEEEE
Q 000379 119 FEVEEYYGAKGVD--EWD--------SQ----CWQK--EINKNDVLVMTPQILLDALRKAFL--------SLDIVCFIVI 174 (1604)
Q Consensus 119 ~~v~~~~G~~~~~--~~~--------~~----~w~~--~~~~~~ViV~T~q~Ll~~l~~~~~--------~l~~i~llI~ 174 (1604)
..+..+.|....+ .|. .+ .++. ....+.|+++||++|..++.+.+. .+..+++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5666777753222 111 00 0111 124688999999999776654321 1468899999
Q ss_pred eCcccccCCChH-----HHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhh--cCCceeeccchhhhh
Q 000379 175 DECHHATGNHPY-----TKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST--LDSQVFTIEDKTEME 247 (1604)
Q Consensus 175 DEaH~~~~~~~~-----~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~--l~~~i~t~~~~~~l~ 247 (1604)
||+|.+...... ...+.. .......+++++|||||.. .....|+.. ++..+..+....
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~i~lSAT~~~-----------~~~~~l~~~~~~~~~~~~v~g~~--- 216 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQL-IRFFECRRKFVFLSATPDP-----------ALILRLQNAKQAGVKIAPIDGEK--- 216 (357)
T ss_pred ecccccCcccchhhhhhhHHHHH-HHhhhcCCcEEEEecCCCH-----------HHHHHHHhccccCceeeeecCcc---
Confidence 999998743211 122221 1112235899999999852 223444433 222211111100
Q ss_pred hccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000379 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327 (1604)
Q Consensus 248 ~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~ 327 (1604)
+.+...+. +....+. ..|.
T Consensus 217 ----------~~~~~~~~----~~~~~~~-----------------~~~~------------------------------ 235 (357)
T TIGR03158 217 ----------YQFPDNPE----LEADNKT-----------------QSFR------------------------------ 235 (357)
T ss_pred ----------cccCCChh----hhccccc-----------------cccc------------------------------
Confidence 00000000 0000000 0000
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHH-
Q 000379 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF- 406 (1604)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL- 406 (1604)
.++..+... ... ........+..+.+.+
T Consensus 236 -----------------------------------~~~~~i~~~-------~~~---------~~~~~~~~l~~l~~~i~ 264 (357)
T TIGR03158 236 -----------------------------------PVLPPVELE-------LIP---------APDFKEEELSELAEEVI 264 (357)
T ss_pred -----------------------------------eeccceEEE-------EEe---------CCchhHHHHHHHHHHHH
Confidence 000000000 000 0000001112222222
Q ss_pred HhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcccccc
Q 000379 407 LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEE 486 (1604)
Q Consensus 407 ~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vlee 486 (1604)
+.+....+.++||||+++..++.+++.|+... .++.+..+||. +++.+|.++ ++.+|||||+++++
T Consensus 265 ~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~------~~~~~R~~~------~~~~iLVaTdv~~r 330 (357)
T TIGR03158 265 ERFRQLPGERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGF------APKKDRERA------MQFDILLGTSTVDV 330 (357)
T ss_pred HHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecC------CCHHHHHHh------ccCCEEEEecHHhc
Confidence 12212345689999999999999999998731 23567889998 778777543 47899999999999
Q ss_pred ccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 487 GMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 487 GIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
|||+|.. .|| ++ |.+..+|+||+||+|
T Consensus 331 GiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 331 GVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999976 566 56 899999999999986
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=288.63 Aligned_cols=307 Identities=17% Similarity=0.173 Sum_probs=204.6
Q ss_pred HHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECC
Q 000379 49 YQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1604)
Q Consensus 49 yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 127 (1604)
+-.++++.+. ++++|++++||||||.++.+++.+... .+.+++++.|++.++.|.++.+.+.++..++..+|-
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 3345555555 478999999999999999988765432 335799999999999999999987665443333331
Q ss_pred C-CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc-ccCCChHHHHHHHHHhhcCCCCcEEE
Q 000379 128 K-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKSDNKPKVFG 205 (1604)
Q Consensus 128 ~-~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~~~~~~~~~p~iLg 205 (1604)
. ..+. ..-.+.+|+|+|+++|++.+.+. ..++++++|||||+|. .....-.-.+++..........+++.
T Consensus 80 ~vr~~~-------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 80 RVRGEN-------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEcccc-------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 1 0011 11235799999999999988864 5789999999999995 44322222233333333445679999
Q ss_pred EeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchh
Q 000379 206 MTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDAS 284 (1604)
Q Consensus 206 LTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~ 284 (1604)
||||... ..+.+.++ +.+.....+. .| ...+|.+..
T Consensus 152 mSATl~~--------------~~l~~~l~~~~vI~~~gr~-------~p--Ve~~y~~~~-------------------- 188 (819)
T TIGR01970 152 MSATLDG--------------ERLSSLLPDAPVVESEGRS-------FP--VEIRYLPLR-------------------- 188 (819)
T ss_pred EeCCCCH--------------HHHHHHcCCCcEEEecCcc-------ee--eeeEEeecc--------------------
Confidence 9999642 12333332 2222111110 01 001110000
Q ss_pred HHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH
Q 000379 285 LSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEV 364 (1604)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (1604)
.. ..+..
T Consensus 189 ----------------~~--------------------------------------------------------~~~~~- 195 (819)
T TIGR01970 189 ----------------GD--------------------------------------------------------QRLED- 195 (819)
T ss_pred ----------------hh--------------------------------------------------------hhHHH-
Confidence 00 00000
Q ss_pred HHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCee
Q 000379 365 LHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLT 444 (1604)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~ 444 (1604)
.....+..++.. ....+|||++++..+..+++.|.+... .++.
T Consensus 196 --------------------------------~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~ 238 (819)
T TIGR01970 196 --------------------------------AVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD-SDVL 238 (819)
T ss_pred --------------------------------HHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC-CCcE
Confidence 000111122221 124799999999999999999976311 3678
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCC------------------HH
Q 000379 445 VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT------------------VS 506 (1604)
Q Consensus 445 ~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s------------------~~ 506 (1604)
+..+||. |++++|.++++.|++|+.+|||||+++|.|||||++++||+++.+.. ..
T Consensus 239 v~pLHg~------L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 239 ICPLYGE------LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred EEEecCC------CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 8999999 99999999999999999999999999999999999999999998752 35
Q ss_pred HHHHHhhhhcccCc-eEEEEEec
Q 000379 507 SYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 507 syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
+++||+|||||.+. .+|.|+++
T Consensus 313 sa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 313 SATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred HHHhhhhhcCCCCCCEEEEeCCH
Confidence 69999999999864 47777663
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-27 Score=258.66 Aligned_cols=325 Identities=19% Similarity=0.215 Sum_probs=248.1
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hc
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~ 117 (1604)
..-+|.|.|+..++.++. +++...+-||+|||.++++++.+.+.... ..+-+++++.||++|+.|..+.+++ .+
T Consensus 40 g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 40 GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 345799999999999985 78888899999999999999888775332 3456799999999999999888876 46
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+++...++|+.+.. +.|..+.++.|||++||++++.....-.+.++.+.+|||||++++... .|...+.+.+...
T Consensus 118 ~lr~s~~~ggD~~e----eqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem-gfqeql~e~l~rl 192 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIE----EQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM-GFQEQLHEILSRL 192 (529)
T ss_pred chhhhhhcccchHH----HHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh-hhHHHHHHHHHhC
Confidence 78999888876654 368888889999999999998887777788999999999999999764 5777777777776
Q ss_pred CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhc-cCCcceeeeeccCCCccccchhhhhhh
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVF-VPSAKESCRFYDQSKFCGSDLKGKLEV 276 (1604)
Q Consensus 198 ~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~-~~~p~e~~~~y~~~~~~~~~l~~~~~~ 276 (1604)
+...+.+.||||.... |- +..+- ...|..+.+..
T Consensus 193 ~~~~QTllfSatlp~~---------------lv--------------~fakaGl~~p~lVRldv---------------- 227 (529)
T KOG0337|consen 193 PESRQTLLFSATLPRD---------------LV--------------DFAKAGLVPPVLVRLDV---------------- 227 (529)
T ss_pred CCcceEEEEeccCchh---------------hH--------------HHHHccCCCCceEEeeh----------------
Confidence 6666999999995421 00 00000 00011000000
Q ss_pred hhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000379 277 SWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQ 356 (1604)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1604)
..++.
T Consensus 228 -----------------------etkis---------------------------------------------------- 232 (529)
T KOG0337|consen 228 -----------------------ETKIS---------------------------------------------------- 232 (529)
T ss_pred -----------------------hhhcc----------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 357 CKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 357 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
+.+... +. ......|...|+.++..... +.+++|||.++..++.+..+|..
T Consensus 233 ------e~lk~~--f~-------------------~~~~a~K~aaLl~il~~~~~--~~~t~vf~~tk~hve~~~~ll~~ 283 (529)
T KOG0337|consen 233 ------ELLKVR--FF-------------------RVRKAEKEAALLSILGGRIK--DKQTIVFVATKHHVEYVRGLLRD 283 (529)
T ss_pred ------hhhhhh--ee-------------------eeccHHHHHHHHHHHhcccc--ccceeEEecccchHHHHHHHHHh
Confidence 000000 00 00114678888888876643 45899999999999999999988
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhc
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRAR 516 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~ 516 (1604)
.++.+..+.|. |++..|..-+.+|+.++.++||.|+++.+|+|||-.+.||+||.|.+..-|+||+||+.
T Consensus 284 ----~g~~~s~iyss------lD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~a 353 (529)
T KOG0337|consen 284 ----FGGEGSDIYSS------LDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVA 353 (529)
T ss_pred ----cCCCccccccc------cChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchh
Confidence 46778888887 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCce--EEEEEeccCHH
Q 000379 517 QHNSQ--FILMLERGNLK 532 (1604)
Q Consensus 517 R~gs~--~i~~v~~~~~~ 532 (1604)
|+|+. +|-+|...+.-
T Consensus 354 ragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 354 RAGRTGRAYSLVASTDDP 371 (529)
T ss_pred hccccceEEEEEecccch
Confidence 99964 66676655443
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-26 Score=258.51 Aligned_cols=326 Identities=19% Similarity=0.213 Sum_probs=229.7
Q ss_pred CCCCCcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHH-HHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh--
Q 000379 42 INFIPRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVML-IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-- 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliaill-i~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~-- 116 (1604)
..-++.|.|.-+++.-+ +.|.+|+.+|+||||+|+-+. |..++. .+++.+||||.++|++|.++.|++.
T Consensus 213 G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------~g~KmlfLvPLVALANQKy~dF~~rYs 286 (830)
T COG1202 213 GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------GGKKMLFLVPLVALANQKYEDFKERYS 286 (830)
T ss_pred CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh------CCCeEEEEehhHHhhcchHHHHHHHhh
Confidence 35678999999999875 799999999999999999874 444443 4667999999999999999999874
Q ss_pred -cCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChHHHHHHH
Q 000379 117 -TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPYTKIMKE 192 (1604)
Q Consensus 117 -~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~~im~~ 192 (1604)
+++.+.+-+|...+.....-.-..--.++||||+||+-+-.+++.| -.+.++..||+||+|.+-.. |..-..+..
T Consensus 287 ~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~R 365 (830)
T COG1202 287 KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGR 365 (830)
T ss_pred cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHH
Confidence 5788888888765543211111112246899999999998888877 67899999999999999753 222222222
Q ss_pred HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 193 FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 193 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
+ ...-+..+.++||||..+. .+|...|+++......| |-|.+..+.+......
T Consensus 366 L-r~l~~~AQ~i~LSATVgNp-------------~elA~~l~a~lV~y~~R-------PVplErHlvf~~~e~e------ 418 (830)
T COG1202 366 L-RYLFPGAQFIYLSATVGNP-------------EELAKKLGAKLVLYDER-------PVPLERHLVFARNESE------ 418 (830)
T ss_pred H-HHhCCCCeEEEEEeecCCh-------------HHHHHHhCCeeEeecCC-------CCChhHeeeeecCchH------
Confidence 1 1122467999999997643 46666777655443332 2233333332211110
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
+. ++..++
T Consensus 419 -----------------------------K~-~ii~~L------------------------------------------ 426 (830)
T COG1202 419 -----------------------------KW-DIIARL------------------------------------------ 426 (830)
T ss_pred -----------------------------HH-HHHHHH------------------------------------------
Confidence 00 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
...+|. . .....-..++|||+++|..+..|+.
T Consensus 427 ---~k~E~~-----~----------------------------------------~sskg~rGQtIVFT~SRrr~h~lA~ 458 (830)
T COG1202 427 ---VKREFS-----T----------------------------------------ESSKGYRGQTIVFTYSRRRCHELAD 458 (830)
T ss_pred ---HHHHHh-----h----------------------------------------hhccCcCCceEEEecchhhHHHHHH
Confidence 000000 0 0000122479999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEE---EcCC-CCCHHHH
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI---RFDL-PKTVSSY 508 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI---~fD~-p~s~~sy 508 (1604)
.|.. .++++..+|+. |+..+|+.+...|.++++.++|+|.+++-|+|+|+-.+|+ -+.. .-|+..|
T Consensus 459 ~L~~----kG~~a~pYHaG------L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF 528 (830)
T COG1202 459 ALTG----KGLKAAPYHAG------LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREF 528 (830)
T ss_pred Hhhc----CCcccccccCC------CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHH
Confidence 9987 58899999988 9999999999999999999999999999999999755442 1233 3499999
Q ss_pred HHHhhhhcccC----ceEEEEEeccCH
Q 000379 509 IQSRGRARQHN----SQFILMLERGNL 531 (1604)
Q Consensus 509 iQr~GRA~R~g----s~~i~~v~~~~~ 531 (1604)
.|+.|||||.+ .++++|+++|..
T Consensus 529 ~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 529 QQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred HHHhcccCCCCcccCceEEEEecCChh
Confidence 99999999998 468999998744
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=278.76 Aligned_cols=317 Identities=18% Similarity=0.232 Sum_probs=200.4
Q ss_pred cHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHH---------HHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 47 RIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKD---------IAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 47 r~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~---------~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...|.++++.++ ++++|+.++||||||.+.-.++.+ .++........+.+++++||++|+.|...++.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 346777788776 599999999999999874333322 1111111234457999999999999999998765
Q ss_pred c------CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHH
Q 000379 117 T------DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190 (1604)
Q Consensus 117 ~------~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 190 (1604)
. +.++...+|+... ..+.......+|+|+|++.. ...++++++|||||||...... .++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-----~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~---Dll 310 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-----ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG---DII 310 (675)
T ss_pred hCccccCCceEEEEECCcch-----HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch---hHH
Confidence 4 3457778888652 11222334679999997632 1246789999999999986543 223
Q ss_pred HHHHhhc-CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCcccc
Q 000379 191 KEFYHKS-DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 191 ~~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
..+.... ...++++.||||+.. .+..+...++ +....+..+ ...|. ...|-......
T Consensus 311 L~llk~~~~~~rq~ILmSATl~~------------dv~~l~~~~~~p~~I~I~gr------t~~pV--~~~yi~~~~~~- 369 (675)
T PHA02653 311 IAVARKHIDKIRSLFLMTATLED------------DRDRIKEFFPNPAFVHIPGG------TLFPI--SEVYVKNKYNP- 369 (675)
T ss_pred HHHHHHhhhhcCEEEEEccCCcH------------hHHHHHHHhcCCcEEEeCCC------cCCCe--EEEEeecCccc-
Confidence 3233222 233589999999631 2334444443 222211110 00011 11110000000
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
...
T Consensus 370 -------------------------------~~~---------------------------------------------- 372 (675)
T PHA02653 370 -------------------------------KNK---------------------------------------------- 372 (675)
T ss_pred -------------------------------ccc----------------------------------------------
Confidence 000
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHH
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK 428 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~ 428 (1604)
..++. ..| ..+...+.......+.++|||++++..++
T Consensus 373 ---------~~y~~---------------------------------~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~ 409 (675)
T PHA02653 373 ---------RAYIE---------------------------------EEK-KNIVTALKKYTPPKGSSGIVFVASVSQCE 409 (675)
T ss_pred ---------hhhhH---------------------------------HHH-HHHHHHHHHhhcccCCcEEEEECcHHHHH
Confidence 00000 000 00111111111112347999999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHH-hCCCceEEEEccccccccCCCCccEEEEcC---CCC-
Q 000379 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF-RGGKVNLLFATDVIEEGMHVPNCSYVIRFD---LPK- 503 (1604)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~F-r~g~~~iLIaT~vleeGIDip~~nlVI~fD---~p~- 503 (1604)
.+.+.|.+.. .++.+..+||. |+++ ++++++| ++|+.+|||||+++|+|||||++++||++| .|.
T Consensus 410 ~l~~~L~~~~--~~~~v~~LHG~------Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~ 479 (675)
T PHA02653 410 EYKKYLEKRL--PIYDFYIIHGK------VPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEP 479 (675)
T ss_pred HHHHHHHhhc--CCceEEeccCC------cCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCc
Confidence 9999998641 35789999998 7764 4677887 789999999999999999999999999998 565
Q ss_pred --------CHHHHHHHhhhhcccCc-eEEEEEecc
Q 000379 504 --------TVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 504 --------s~~syiQr~GRA~R~gs-~~i~~v~~~ 529 (1604)
|..+|+||+|||||... .++.|+++.
T Consensus 480 ~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~ 514 (675)
T PHA02653 480 FGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLD 514 (675)
T ss_pred ccCcccccCHHHHHHhccCcCCCCCCeEEEEECHH
Confidence 88899999999999864 477777644
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-25 Score=292.06 Aligned_cols=299 Identities=18% Similarity=0.216 Sum_probs=198.9
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
..++|+++|.++++.++ ++|+++++|||+|||..++.++..+.. .+.+++||+||++|+.|+++.++.+.
T Consensus 77 ~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~------~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAK------KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 45689999999999887 589999999999999754443333221 35679999999999999999999865
Q ss_pred CCcEEEEECCCCCC-ccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-Ch---------
Q 000379 118 DFEVEEYYGAKGVD-EWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HP--------- 185 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~-~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~--------- 185 (1604)
++.+..++|+.+.. ....+.+.... +.++|+|+||+.|.+.+. .+...++++||+||||++.+. +.
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 56777777765432 11122233333 368999999999998776 456677999999999999852 11
Q ss_pred HH-HHHHHHHhhcC------------------------CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec
Q 000379 186 YT-KIMKEFYHKSD------------------------NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI 240 (1604)
Q Consensus 186 ~~-~im~~~~~~~~------------------------~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~ 240 (1604)
+. ..+...+...+ ...+++.+|||..... .. ..-+...++ +.+
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~-------~~--~~l~~~ll~---~~v 296 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRG-------NR--VKLFRELLG---FEV 296 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccc-------hH--HHHhhccce---EEe
Confidence 10 11111111111 1344555666642110 00 000000000 000
Q ss_pred cchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000379 241 EDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYC 320 (1604)
Q Consensus 241 ~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (1604)
. ++
T Consensus 297 ~----------~~------------------------------------------------------------------- 299 (1176)
T PRK09401 297 G----------SP------------------------------------------------------------------- 299 (1176)
T ss_pred c----------Cc-------------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHH
Q 000379 321 LDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH 400 (1604)
Q Consensus 321 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~ 400 (1604)
...... +.+ .. . ....|..
T Consensus 300 ------------------------------------------------~~~~rn----I~~---~y---i---~~~~k~~ 318 (1176)
T PRK09401 300 ------------------------------------------------VFYLRN----IVD---SY---I---VDEDSVE 318 (1176)
T ss_pred ------------------------------------------------ccccCC----ceE---EE---E---EcccHHH
Confidence 000000 000 00 0 0014666
Q ss_pred HHHHHHHhhCCCCCcEEEEEEchHHH---HHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 000379 401 ELLQLFLSFGKSTQVLCIIFVERIIA---AKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477 (1604)
Q Consensus 401 ~L~~lL~~~~~~~~~~~IIFv~~r~t---a~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~i 477 (1604)
.|.+++...+ ..+||||+++.. |+.|.+.|.. .++++..+||+ | .+.+++|++|+++|
T Consensus 319 ~L~~ll~~l~----~~~LIFv~t~~~~~~ae~l~~~L~~----~gi~v~~~hg~------l-----~~~l~~F~~G~~~V 379 (1176)
T PRK09401 319 KLVELVKRLG----DGGLIFVPSDKGKEYAEELAEYLED----LGINAELAISG------F-----ERKFEKFEEGEVDV 379 (1176)
T ss_pred HHHHHHHhcC----CCEEEEEecccChHHHHHHHHHHHH----CCCcEEEEeCc------H-----HHHHHHHHCCCCCE
Confidence 7777776543 369999999887 9999999988 47899999998 5 23469999999999
Q ss_pred EEE----ccccccccCCCC-ccEEEEcCCCC------CHHHHHHHhhhhcc
Q 000379 478 LFA----TDVIEEGMHVPN-CSYVIRFDLPK------TVSSYIQSRGRARQ 517 (1604)
Q Consensus 478 LIa----T~vleeGIDip~-~nlVI~fD~p~------s~~syiQr~GRA~R 517 (1604)
||| |+++++|||+|+ +++||+||.|. ....|.+|.||+-+
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999 699999999999 89999999999 67889999999964
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=284.39 Aligned_cols=305 Identities=16% Similarity=0.194 Sum_probs=201.7
Q ss_pred HHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC----cEE
Q 000379 48 IYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF----EVE 122 (1604)
Q Consensus 48 ~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~----~v~ 122 (1604)
.+-.++++.+. ++++|+.++||||||.++.+++.+.. ..+.++++++||+.++.|.++.+.+.++. .|+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 33445555554 47899999999999999988765432 12346999999999999999999776654 444
Q ss_pred EEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc-CCChHHHHHHHHHhhcCCCC
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT-GNHPYTKIMKEFYHKSDNKP 201 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~-~~~~~~~im~~~~~~~~~~p 201 (1604)
..+++.... -...+|+|+|+++|++.+.+. ..++++++|||||+|... ...-.-..+.+.........
T Consensus 82 y~vr~~~~~----------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 82 YRMRAESKV----------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEecCcccc----------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 444433211 125689999999999988864 578999999999999742 21111122222222334567
Q ss_pred cEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhh
Q 000379 202 KVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280 (1604)
Q Consensus 202 ~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~ 280 (1604)
++++||||+.. ..+...+. +.+.....+. .| ...+|.+
T Consensus 151 qlilmSATl~~--------------~~l~~~~~~~~~I~~~gr~-------~p--V~~~y~~------------------ 189 (812)
T PRK11664 151 KLLIMSATLDN--------------DRLQQLLPDAPVIVSEGRS-------FP--VERRYQP------------------ 189 (812)
T ss_pred eEEEEecCCCH--------------HHHHHhcCCCCEEEecCcc-------cc--ceEEecc------------------
Confidence 99999999641 12333332 1111111100 00 0011100
Q ss_pred hchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHH
Q 000379 281 FDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYF 360 (1604)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1604)
.... .+
T Consensus 190 ------------------~~~~--------------------------------------------------------~~ 195 (812)
T PRK11664 190 ------------------LPAH--------------------------------------------------------QR 195 (812)
T ss_pred ------------------Cchh--------------------------------------------------------hh
Confidence 0000 00
Q ss_pred HHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCC
Q 000379 361 LEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL 440 (1604)
Q Consensus 361 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~ 440 (1604)
+... -...+.+++.. ....+|||++++..+..+.+.|.... .
T Consensus 196 ~~~~---------------------------------v~~~l~~~l~~----~~g~iLVFlpg~~ei~~l~~~L~~~~-~ 237 (812)
T PRK11664 196 FDEA---------------------------------VARATAELLRQ----ESGSLLLFLPGVGEIQRVQEQLASRV-A 237 (812)
T ss_pred HHHH---------------------------------HHHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHHhc-c
Confidence 0000 00011112221 23579999999999999999998621 1
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCC----------------
Q 000379 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKT---------------- 504 (1604)
Q Consensus 441 ~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s---------------- 504 (1604)
.++.+..+||. |+.++|..+++.|++|+.+|||||+++|.|||||++++||+++.+..
T Consensus 238 ~~~~v~~Lhg~------l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 238 SDVLLCPLYGA------LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred CCceEEEeeCC------CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 35788899999 89999999999999999999999999999999999999999777653
Q ss_pred --HHHHHHHhhhhcccCc-eEEEEEec
Q 000379 505 --VSSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 505 --~~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
-.+|+||+|||||.+. .+|.|+++
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCH
Confidence 3589999999999864 46777653
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=257.63 Aligned_cols=308 Identities=22% Similarity=0.331 Sum_probs=213.0
Q ss_pred CCCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
....|+++..|..++..+.. .|=+++++.|||||++|++.+...+. .+..+..++||--|++|.++.
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEeccHHHHHHHHHHH
Confidence 35679999999999998863 67799999999999999999888876 566799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+++++ +++|..++|....... .+...... +..+|+|+|...+ +..+.+.++.|+|+||-|+..-. .+.
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r-~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRFGV~--QR~ 402 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKAR-KEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRFGVH--QRL 402 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHH-HHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccccHH--HHH
Confidence 99976 7899999998765542 22233333 4599999998765 44677889999999999998431 111
Q ss_pred HHHHHHhhcCC-CCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccc
Q 000379 189 IMKEFYHKSDN-KPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 189 im~~~~~~~~~-~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
.+ ..... .|++|-|||||+... |.-+. |.--+-..+.+. |.
T Consensus 403 ~L----~~KG~~~Ph~LvMTATPIPRT--------------LAlt~----fgDldvS~IdEl-P~--------------- 444 (677)
T COG1200 403 AL----REKGEQNPHVLVMTATPIPRT--------------LALTA----FGDLDVSIIDEL-PP--------------- 444 (677)
T ss_pred HH----HHhCCCCCcEEEEeCCCchHH--------------HHHHH----hccccchhhccC-CC---------------
Confidence 11 12234 699999999998642 10000 000000000000 00
Q ss_pred cchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Q 000379 268 SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEEC 347 (1604)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 347 (1604)
T Consensus 445 -------------------------------------------------------------------------------- 444 (677)
T COG1200 445 -------------------------------------------------------------------------------- 444 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHH-HhhCCCCCcEEEEEEchH--
Q 000379 348 EIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLF-LSFGKSTQVLCIIFVERI-- 424 (1604)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL-~~~~~~~~~~~IIFv~~r-- 424 (1604)
..+.+... .+ ...+...+++.+ .+.. .+.++.+-|...
T Consensus 445 ---------------------------GRkpI~T~------~i----~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeE 485 (677)
T COG1200 445 ---------------------------GRKPITTV------VI----PHERRPEVYERIREEIA--KGRQAYVVCPLIEE 485 (677)
T ss_pred ---------------------------CCCceEEE------Ee----ccccHHHHHHHHHHHHH--cCCEEEEEeccccc
Confidence 00000000 00 001111111111 1111 233566655533
Q ss_pred ------HHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE
Q 000379 425 ------IAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR 498 (1604)
Q Consensus 425 ------~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~ 498 (1604)
..|..++..|+. .+++++++.+||+ |+..++.+++++|++|+++|||||.|.|.|||+|++++.|.
T Consensus 486 SE~l~l~~a~~~~~~L~~--~~~~~~vgL~HGr------m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 486 SEKLELQAAEELYEELKS--FLPELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred cccchhhhHHHHHHHHHH--HcccceeEEEecC------CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 356677777774 3567899999999 99999999999999999999999999999999999999998
Q ss_pred cCCCC-CHHHHHHHhhhhcccCce-EEEEE
Q 000379 499 FDLPK-TVSSYIQSRGRARQHNSQ-FILML 526 (1604)
Q Consensus 499 fD~p~-s~~syiQr~GRA~R~gs~-~i~~v 526 (1604)
.|.-. -+.+.-|-|||+||-+-+ |++++
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 88654 788999999999998744 43444
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=252.46 Aligned_cols=458 Identities=18% Similarity=0.197 Sum_probs=259.8
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH
Q 000379 35 PSSSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 35 ~~~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
+++......+++.+||.-.+.|+. +-|+|+++++|.|||..++..+..+.+ ...+++ =|||||...| +.|
T Consensus 389 ~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq---~g~~gp-HLVVvPsSTl-eNW 463 (941)
T KOG0389|consen 389 EQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ---IGNPGP-HLVVVPSSTL-ENW 463 (941)
T ss_pred cCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH---cCCCCC-cEEEecchhH-HHH
Confidence 344455567889999999999884 578899999999999999988777665 222233 5999999666 779
Q ss_pred HHHHHhhcC-CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH-HHhcCcCccceeEEEEeCcccccCC--Ch
Q 000379 110 YDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA-LRKAFLSLDIVCFIVIDECHHATGN--HP 185 (1604)
Q Consensus 110 ~~~i~~~~~-~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~-l~~~~~~l~~i~llI~DEaH~~~~~--~~ 185 (1604)
.++|+++++ ++|..|||+..-...-+......-..++|+|+||+..-.. -.+.++.-.+++++|+||+|.+.+. ..
T Consensus 464 lrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 464 LREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 999999995 8999999975211111111222223789999999977422 2345666678999999999999754 34
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc--chhhhhhccCCcceeeeeccCC
Q 000379 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE--DKTEMEVFVPSAKESCRFYDQS 263 (1604)
Q Consensus 186 ~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~--~~~~l~~~~~~p~e~~~~y~~~ 263 (1604)
|...|.- +.-.+|+||+||..++ +.+-+.-|+-+| +.+|... +...+...-..+ ..
T Consensus 544 y~~LM~I------~An~RlLLTGTPLQNN-------L~ELiSLL~Fvl-P~vF~~~~~dl~~if~~k~~~--------d~ 601 (941)
T KOG0389|consen 544 YKHLMSI------NANFRLLLTGTPLQNN-------LKELISLLAFVL-PKVFDSSMEDLDVIFKAKKTS--------DG 601 (941)
T ss_pred HHHhccc------cccceEEeeCCccccc-------HHHHHHHHHHHh-hHhhhccchHHHHHHhccCCc--------cc
Confidence 5556652 4567899999999875 223333333222 2333222 111121111110 00
Q ss_pred Cccccch-hhhhhhhhhhhchhHH-HHHHhHhhh---------hhhhhhHHHHHHHHHHHHH---------------HHH
Q 000379 264 KFCGSDL-KGKLEVSWSKFDASLS-KLQGSQLNC---------YKDMDDKHKTLRKQLSDYH---------------AKI 317 (1604)
Q Consensus 264 ~~~~~~l-~~~~~~~~~~~~~~~~-~l~~~~~~~---------~~~~~~~~~~~~~~l~~~~---------------~~~ 317 (1604)
......+ .+.+.+...-+.+++. ++..+.... |-.+.+.-+.+-..+.... ..+
T Consensus 602 d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~v 681 (941)
T KOG0389|consen 602 DIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNV 681 (941)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchH
Confidence 0000111 1112222222222222 121111111 0011111000000000000 001
Q ss_pred HHHHHHhh--hHHH-HHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCC
Q 000379 318 LYCLDELG--LICA-YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGY 394 (1604)
Q Consensus 318 ~~~~~~lG--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1604)
+..++... |..- ..+-...+..+.+.......|.... .+++.+-..-+..+-...-..................
T Consensus 682 lmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n---~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~m 758 (941)
T KOG0389|consen 682 LMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKAN---EQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWM 758 (941)
T ss_pred HHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcC---HHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhh
Confidence 11111100 0000 0000000011110000001111100 0111111111110000000000000011111223345
Q ss_pred CCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
.|.|++.|-++|.+... .+.|++||.+.-.+.+.|..+|..+ +++...+.|.+ .-..|+..++.|...+
T Consensus 759 dSgK~r~L~~LLp~~k~-~G~RVLiFSQFTqmLDILE~~L~~l----~~~ylRLDGsT------qV~~RQ~lId~Fn~d~ 827 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKK-KGDRVLIFSQFTQMLDILEVVLDTL----GYKYLRLDGST------QVNDRQDLIDEFNTDK 827 (941)
T ss_pred hhhhHhHHHHHHHHHhh-cCCEEEEeeHHHHHHHHHHHHHHhc----CceEEeecCCc------cchHHHHHHHhhccCC
Confidence 58999999999988763 4589999999999999999999874 78888899984 5788999999999875
Q ss_pred --ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 475 --VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 475 --~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
.-+|++|.+++-|||+..+|.||.||..-|+-.-.|.-.||+|.|++ ++-++.+++.++
T Consensus 828 difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 828 DIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 34678999999999999999999999999999999999999999985 677888887763
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=225.05 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=135.5
Q ss_pred CCCcHHHHHHHHHh-hccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----C
Q 000379 44 FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----D 118 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~-l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~----~ 118 (1604)
-.|.+.|.++++.+ ++.++++.+..|.|||.++++.-.+.++ .-.+.-.++++|.|++|+.|+.++..++. +
T Consensus 63 ehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---pv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 63 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred CCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 35889999999876 5899999999999999999886555444 44455679999999999999999888764 6
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
+++.+++||.++.. +.+... +.++|+|+||++++.+.+.+.++++++...|+|||+.+...-.+++-+++..+..+
T Consensus 140 vkvaVFfGG~~Ikk-dee~lk---~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp 215 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKK-DEELLK---NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP 215 (387)
T ss_pred ceEEEEEcceeccc-cHHHHh---CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc
Confidence 89999999998764 222222 37899999999999999999999999999999999999988788888898887777
Q ss_pred CCCcEEEEeccC
Q 000379 199 NKPKVFGMTASP 210 (1604)
Q Consensus 199 ~~p~iLgLTATP 210 (1604)
...++..+|||.
T Consensus 216 ~~KQvmmfsatl 227 (387)
T KOG0329|consen 216 HEKQVMMFSATL 227 (387)
T ss_pred ccceeeeeeeec
Confidence 778899999995
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=286.29 Aligned_cols=132 Identities=21% Similarity=0.166 Sum_probs=100.8
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
..++|+++|.++++.++ ++++++++|||+|||+.+++++..... .+.+++||+||++|+.|+++.++.+.
T Consensus 76 ~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred hCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 35589999999999987 589999999999999965554433321 34579999999999999999999854
Q ss_pred --CCcEEEEECCCCCCccchhHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 118 --DFEVEEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 118 --~~~v~~~~G~~~~~~~~~~~w~~~~~-~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
++++..++|+.+... ..+.|..... .++|+|+||+.|.+.+... . ..+++++|+||||++.+
T Consensus 150 ~~~v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred CCceeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 456677888875442 2233544443 5899999999998766542 2 26799999999999975
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=255.01 Aligned_cols=445 Identities=18% Similarity=0.207 Sum_probs=252.7
Q ss_pred CCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhC--C-CCeEEEEEecChhhHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSN--G-FKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~--~-~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.+...++|.||+|.+.|+. +-++|+|+++|.|||+.++..+..-....+.. . ...-.||+||. .|+.-|..
T Consensus 970 ~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~ 1048 (1549)
T KOG0392|consen 970 VPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKS 1048 (1549)
T ss_pred cchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHH
Confidence 3445689999999999884 47899999999999998887554322211111 0 11228999998 99999999
Q ss_pred HHHhhcCC-cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHH
Q 000379 112 VIRVHTDF-EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKI 189 (1604)
Q Consensus 112 ~i~~~~~~-~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~i 189 (1604)
++.+++++ +|..++|.-. .+...+..+.+++|+|++|+++.+.+. ++.-.+|+++|+||.|-+.+. .-....
T Consensus 1049 E~~kf~pfL~v~~yvg~p~----~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~ktkl~ka 1122 (1549)
T KOG0392|consen 1049 EVKKFFPFLKVLQYVGPPA----ERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSKTKLTKA 1122 (1549)
T ss_pred HHHHhcchhhhhhhcCChH----HHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchHHHHHHH
Confidence 99999985 7777887642 223445666789999999999987654 333346899999999999753 122233
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
++.+ ..-++|.||+||++|+ ...+..|...|-+..... .++--.+|. +|...... + ...+..
T Consensus 1123 vkqL-----~a~hRLILSGTPIQNn--------vleLWSLFdFLMPGfLGt-EKqFqsrf~-kpI~asRd--~-K~Sske 1184 (1549)
T KOG0392|consen 1123 VKQL-----RANHRLILSGTPIQNN--------VLELWSLFDFLMPGFLGT-EKQFQSRFG-KPILASRD--P-KSSSKE 1184 (1549)
T ss_pred HHHH-----hhcceEEeeCCCcccC--------HHHHHHHHHHhcccccCc-HHHHHHHhc-chhhhhcC--c-ccchhH
Confidence 3332 3457899999999986 223344444443322221 121111111 22111000 0 000000
Q ss_pred hh---hhhhhhhhhhchhHHHHHHhHhhhhhhhhhH-HHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000379 270 LK---GKLEVSWSKFDASLSKLQGSQLNCYKDMDDK-HKT-------LRKQLSDYHAKILYCLDELGLICAYEAVKICLE 338 (1604)
Q Consensus 270 l~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~-------~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~ 338 (1604)
.. -.++...+..-+++.+... ...+.+++.+ +++ +++++-+.+..... .+.+
T Consensus 1185 ~EaG~lAleaLHKqVLPF~LRRlK--edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k---------------~~~~ 1247 (1549)
T KOG0392|consen 1185 QEAGVLALEALHKQVLPFLLRRLK--EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAK---------------QCVS 1247 (1549)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH--HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhc---------------cccc
Confidence 00 0122222232232221110 0112222222 111 11111111111000 0000
Q ss_pred HhhhhHHHHHH-HHHhhHHHHHHHHHHHHHHhhhcCcc---chhhccccCCcccccccCCCCHHHHHHHHHHHhhCCC--
Q 000379 339 KVLKAQEECEI-YRQSSLQCKYFLEEVLHVIGSALPLA---DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKS-- 412 (1604)
Q Consensus 339 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~-- 412 (1604)
........... ...-..+..+|+....+...-.+... ...+.........+...-..++|+.+|.++|...+-.
T Consensus 1248 ~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~ 1327 (1549)
T KOG0392|consen 1248 SQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNN 1327 (1549)
T ss_pred cccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCC
Confidence 00000000000 00000111122211111100000000 0000000000000011113489999999999877532
Q ss_pred -----------CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceEE-E
Q 000379 413 -----------TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLL-F 479 (1604)
Q Consensus 413 -----------~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~iL-I 479 (1604)
.+.|++|||+-+.+.+.+.+-|.+- -.+.+....+.|. .++.+|.+++++|+++ .+.|| .
T Consensus 1328 ~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~-~mpsVtymRLDGS------Vpp~~R~kiV~~FN~DptIDvLlL 1400 (1549)
T KOG0392|consen 1328 SDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK-YMPSVTYMRLDGS------VPPGDRQKIVERFNEDPTIDVLLL 1400 (1549)
T ss_pred CcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh-hcCceeEEEecCC------CCcHHHHHHHHHhcCCCceeEEEE
Confidence 3579999999999999988866542 1233444567787 8999999999999999 68876 5
Q ss_pred EccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 480 aT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
+|.|++-|+|+.+++.||.++-.||+-.-.|.+.||+|.|++ ++-++.+|..++
T Consensus 1401 TThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1401 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred eeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 899999999999999999999999999999999999999997 666778888763
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=265.94 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=121.1
Q ss_pred CCCCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 41 SINFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
.....++++|.++++.+.+ +++++.++||+|||.+++.++.+.+. .++++|||+|+++|+.|+.+.+++.
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 4456899999999999975 67999999999999999988877765 3467999999999999999999999
Q ss_pred cCCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChH--HHHH
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPY--TKIM 190 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~--~~im 190 (1604)
++.++..++|+.+... ..+.|.... +..+|+|+|+..+ +..+.++++||+||+|...-. .|+ .+.+
T Consensus 214 fg~~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 214 FGAPVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred hCCCEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 9999999999876543 345577655 4579999999876 356789999999999987522 121 1122
Q ss_pred HHHHhhcCCCCcEEEEeccCC
Q 000379 191 KEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 191 ~~~~~~~~~~p~iLgLTATP~ 211 (1604)
.. ........+++++||||.
T Consensus 286 a~-~ra~~~~~~~il~SATps 305 (679)
T PRK05580 286 AV-VRAKLENIPVVLGSATPS 305 (679)
T ss_pred HH-HHhhccCCCEEEEcCCCC
Confidence 11 112234578889999986
|
|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-25 Score=204.69 Aligned_cols=86 Identities=42% Similarity=0.853 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCcceEEEEecCceEEEEEEccCCCCcceeecCCCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 000379 586 SVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALNDH 665 (1604)
Q Consensus 586 a~~~l~~yc~~l~~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~~~~~~~g~~~~~k~~Ak~~aaf~ac~~L~~~g~ld~~ 665 (1604)
|+++||+||++||+|.|+.++|.|.+...+++|+|+|+||.++|++.|.|.+|++|+.|||+|||+||++||++|+||||
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~ 80 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDH 80 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTT
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 78999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 000379 666 LLPSVE 671 (1604)
Q Consensus 666 L~P~~~ 671 (1604)
|+|..+
T Consensus 81 L~P~~~ 86 (90)
T PF03368_consen 81 LLPISK 86 (90)
T ss_dssp S--HHH
T ss_pred cCCCCC
Confidence 999864
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=256.20 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++.+.+.. ....++||||+++..++.+.+.|.+ .++.+..+||. +.++++..+..+|+.|
T Consensus 407 ~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~----~gi~~~~L~a~------~~~~E~~ii~~ag~~g-- 473 (762)
T TIGR03714 407 PEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLR----EGIPHNLLNAQ------NAAKEAQIIAEAGQKG-- 473 (762)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHH----CCCCEEEecCC------ChHHHHHHHHHcCCCC--
Confidence 578888988886543 2345899999999999999999988 47889999998 6788877777777776
Q ss_pred eEEEEccccccccCCC---------CccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEec
Q 000379 476 NLLFATDVIEEGMHVP---------NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLER 528 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---------~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~ 528 (1604)
.|+|||+++++|+||+ ++++|++|++|..... +||+||+||.|.. .+.|+..
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 7999999999999999 9999999999998766 9999999999954 5555554
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=255.53 Aligned_cols=380 Identities=18% Similarity=0.242 Sum_probs=235.8
Q ss_pred ccccccCCCCCCCCCCCCCC--CCCCCCCCCCCC--CCCCCCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHH
Q 000379 7 SLKRSFGEVHSPNPPDMGSS--GHDHAVDGPSSS--TNSINFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLI 80 (1604)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli 80 (1604)
...+.|+|+..|+...+... +.-.-.+-+... ..-..-+....|.++|+.+-+ .|.||++|||+|||.+|.+.|
T Consensus 68 ~~~~~~eE~~~P~s~~~~~~~~k~~~isdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~I 147 (1230)
T KOG0952|consen 68 EDYKTYEEVKIPASVPMPMDGEKLLSISDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCI 147 (1230)
T ss_pred cccCcceEEecCccCCCccccccceeEEecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHH
Confidence 56678888888885555421 111111111111 222233567899999999975 999999999999999999999
Q ss_pred HHHHHHHh----hCCCCeEEEEEecChhhHHHHHHHHHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHH
Q 000379 81 KDIAQAIK----SNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ 153 (1604)
Q Consensus 81 ~~~~~~~~----~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q 153 (1604)
.+.+.+.. .....-++++++|+++||....+.+.+.+ |+.|..++|++... ......++|||+||+
T Consensus 148 Lr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPE 220 (1230)
T KOG0952|consen 148 LRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLT-------KTEIADTQIIVTTPE 220 (1230)
T ss_pred HHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhh-------HHHHHhcCEEEeccc
Confidence 88876411 12345579999999999999998887754 79999999987543 233568999999999
Q ss_pred HHHHHHHhc----CcCccceeEEEEeCcccccCCC-h-HHHHHHHHHh---hcCCCCcEEEEeccCCCCCCCCCcccHHH
Q 000379 154 ILLDALRKA----FLSLDIVCFIVIDECHHATGNH-P-YTKIMKEFYH---KSDNKPKVFGMTASPVVRKGVSSAMDCEG 224 (1604)
Q Consensus 154 ~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~~-~-~~~im~~~~~---~~~~~p~iLgLTATP~~~~~~~~~~~~~~ 224 (1604)
.+ +...+. .-.++.+.|||+||+|.+.++. | ...|+.+... .....-||+|||||..+
T Consensus 221 Kw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN------------ 287 (1230)
T KOG0952|consen 221 KW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPN------------ 287 (1230)
T ss_pred ce-eeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC------------
Confidence 87 222221 1235778999999999997652 2 2223333322 23456899999999542
Q ss_pred HHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHH
Q 000379 225 QISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHK 304 (1604)
Q Consensus 225 ~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (1604)
+.++..+|... |.....+|+.. +.+..+.+.+
T Consensus 288 -~eDvA~fL~vn----------------~~~glfsFd~~-yRPvpL~~~~------------------------------ 319 (1230)
T KOG0952|consen 288 -YEDVARFLRVN----------------PYAGLFSFDQR-YRPVPLTQGF------------------------------ 319 (1230)
T ss_pred -HHHHHHHhcCC----------------Cccceeeeccc-ccccceeeeE------------------------------
Confidence 34455555421 11222222210 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccC
Q 000379 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGF 384 (1604)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 384 (1604)
+|..+. +. ......++
T Consensus 320 -------------------iG~k~~------------~~-----------~~~~~~~d---------------------- 335 (1230)
T KOG0952|consen 320 -------------------IGIKGK------------KN-----------RQQKKNID---------------------- 335 (1230)
T ss_pred -------------------Eeeecc------------cc-----------hhhhhhHH----------------------
Confidence 000000 00 00000000
Q ss_pred CcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcC-------------
Q 000379 385 DYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGS------------- 451 (1604)
Q Consensus 385 ~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~------------- 451 (1604)
.-...++.+.+. .+.+++|||.+|..+...++.|.+.....+....++++.
T Consensus 336 -----------~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~ 399 (1230)
T KOG0952|consen 336 -----------EVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGM 399 (1230)
T ss_pred -----------HHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhh
Confidence 112223333332 245899999999888777777765322223333333332
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE----cCCCC------CHHHHHHHhhhhcccC--
Q 000379 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR----FDLPK------TVSSYIQSRGRARQHN-- 519 (1604)
Q Consensus 452 ~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~----fD~p~------s~~syiQr~GRA~R~g-- 519 (1604)
+.++.+|...+|..+.+-|..|.++||+||+.++.|+|+|+--++|. ||... +.-.-+|..|||||.+
T Consensus 400 ~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 400 GIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred hhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 22346799999999999999999999999999999999997666663 55444 4567799999999986
Q ss_pred --ceEEEEEeccCHHHH
Q 000379 520 --SQFILMLERGNLKQR 534 (1604)
Q Consensus 520 --s~~i~~v~~~~~~~~ 534 (1604)
+..++|.+.+...+.
T Consensus 480 ~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLDHY 496 (1230)
T ss_pred CCceEEEEecccHHHHH
Confidence 246677665545443
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=254.17 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...|++.+.... ....++||||+++..++.|...|.+ .++.+..+||. +..+++..+..+++.|
T Consensus 411 ~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~----~gi~~~~L~~~------~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 411 DEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDE----AGIPHNLLNAK------NAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEecCC------ccHHHHHHHHHcCCCC--
Confidence 578888988886542 2346899999999999999999998 47899999998 6777777777777776
Q ss_pred eEEEEccccccccCC---CCcc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHV---PNCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDi---p~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
+|+|||+++++|+|| |++. +||+||+|.+.+.|+||+||+||.|.. .+.|+...
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 799999999999999 6898 999999999999999999999999964 55555543
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=253.76 Aligned_cols=420 Identities=17% Similarity=0.189 Sum_probs=253.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHH
Q 000379 36 SSSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1604)
Q Consensus 36 ~~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 110 (1604)
.++.+....++|+||.+.+.+++ ++|+|++.++|.|||+..+..+.++.....-.+ -.|++||... +..|.
T Consensus 361 ~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g---pflvvvplst-~~~W~ 436 (1373)
T KOG0384|consen 361 KQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG---PFLVVVPLST-ITAWE 436 (1373)
T ss_pred cCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC---CeEEEeehhh-hHHHH
Confidence 45556666899999999998875 599999999999999999998888876333222 2799999844 56699
Q ss_pred HHHHhhcCCcEEEEECCCCCCccchh-HHHHhc----CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-C
Q 000379 111 DVIRVHTDFEVEEYYGAKGVDEWDSQ-CWQKEI----NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-H 184 (1604)
Q Consensus 111 ~~i~~~~~~~v~~~~G~~~~~~~~~~-~w~~~~----~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~ 184 (1604)
.+|..+++.++++|+|+.....-..+ .|...- -..+++++|+++++..- .++.--.|..+++||||++.+. .
T Consensus 437 ~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 437 REFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchHH
Confidence 99999999999999998643321111 122111 15799999999986543 3444456889999999999854 2
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc---chhhhhhccCCcceeeeecc
Q 000379 185 PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE---DKTEMEVFVPSAKESCRFYD 261 (1604)
Q Consensus 185 ~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~---~~~~l~~~~~~p~e~~~~y~ 261 (1604)
.....+..| ..-+.|++|+||.+|+ +.+|.++++- .-|. ..+++..-...-+
T Consensus 515 ~l~~~l~~f-----~~~~rllitgTPlQNs-----------ikEL~sLl~F--l~P~kf~~~~~f~~~~~~~~------- 569 (1373)
T KOG0384|consen 515 KLYESLNQF-----KMNHRLLITGTPLQNS-----------LKELWSLLHF--LMPGKFDSWDEFLEEFDEET------- 569 (1373)
T ss_pred HHHHHHHHh-----cccceeeecCCCcccc-----------HHHHHHHhcc--cCCCCCCcHHHHHHhhcchh-------
Confidence 222224444 4568899999999875 7788877652 1111 0111100000000
Q ss_pred CCCccccchhhhhhhhhhhhchhHH-HHHHhHhhhhhhhhhHH--------HHHHHH-----HHHHHHHHHHHHHHhhhH
Q 000379 262 QSKFCGSDLKGKLEVSWSKFDASLS-KLQGSQLNCYKDMDDKH--------KTLRKQ-----LSDYHAKILYCLDELGLI 327 (1604)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~--------~~~~~~-----l~~~~~~~~~~~~~lG~~ 327 (1604)
...+..+...+.+.+. ++...... .++.+. ..++++ |.+.+..+. -|.-
T Consensus 570 ---------e~~~~~L~~~L~P~~lRr~kkdvek---slp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt-----KG~~ 632 (1373)
T KOG0384|consen 570 ---------EEQVRKLQQILKPFLLRRLKKDVEK---SLPPKEETILRVELSDLQKQYYKAILTKNFSALT-----KGAK 632 (1373)
T ss_pred ---------HHHHHHHHHHhhHHHHHHHHhhhcc---CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh-----ccCC
Confidence 0001111111111111 11111100 011110 011111 111111000 0000
Q ss_pred HH-HHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-----HHHhhhcCccchhhccccCCcccccccCCCCHHHHH
Q 000379 328 CA-YEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL-----HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHE 401 (1604)
Q Consensus 328 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~ 401 (1604)
.. .....+. -++.+.-...-.... ....++.... ..+... -..|.|+-.
T Consensus 633 g~~~~lLNim-mELkKccNHpyLi~g---aee~~~~~~~~~~~d~~L~~l---------------------I~sSGKlVL 687 (1373)
T KOG0384|consen 633 GSTPSLLNIM-MELKKCCNHPYLIKG---AEEKILGDFRDKMRDEALQAL---------------------IQSSGKLVL 687 (1373)
T ss_pred CCCchHHHHH-HHHHHhcCCccccCc---HHHHHHHhhhhcchHHHHHHH---------------------HHhcCcEEe
Confidence 00 0000000 000000000000000 0000000000 000000 012567777
Q ss_pred HHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC---CceEE
Q 000379 402 LLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG---KVNLL 478 (1604)
Q Consensus 402 L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g---~~~iL 478 (1604)
|-++|.... ..+.|+|||.+-+.+.+.|.++|.. .++....+.|. +...-|+..|+.|..- .+-+|
T Consensus 688 LDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~----r~ypfQRLDGs------vrgelRq~AIDhFnap~SddFvFL 756 (1373)
T KOG0384|consen 688 LDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSL----RGYPFQRLDGS------VRGELRQQAIDHFNAPDSDDFVFL 756 (1373)
T ss_pred HHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHH----cCCcceeccCC------cchHHHHHHHHhccCCCCCceEEE
Confidence 777777665 4568999999999999999999986 68889999998 7899999999999864 57789
Q ss_pred EEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHH
Q 000379 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDI 540 (1604)
Q Consensus 479 IaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~ 540 (1604)
+||.+++-|||+..++.||.||..||+..-.|...||+|.|++ +|-|++.+..+ .+.+++.
T Consensus 757 LSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE-eEilERA 821 (1373)
T KOG0384|consen 757 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE-EEILERA 821 (1373)
T ss_pred EecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH-HHHHHHH
Confidence 9999999999999999999999999999999999999999986 67777776554 3444443
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=263.74 Aligned_cols=329 Identities=18% Similarity=0.196 Sum_probs=221.6
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
....++.||.++++.+. ++|+||+.+||||||.+++++|.+.+. ..+..++|+|-||++|++.|.+.++++.
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l----~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL----RDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh----hCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 34459999999999997 589999999999999999999988765 3345579999999999999999999864
Q ss_pred C--CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc----CcCccceeEEEEeCcccccCC--ChHHHH
Q 000379 118 D--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA----FLSLDIVCFIVIDECHHATGN--HPYTKI 189 (1604)
Q Consensus 118 ~--~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~i 189 (1604)
+ +.+..|.|+..... . .....+.++|+++||++|-..+... .+.++++.+||+||+|-..+- ...+.+
T Consensus 143 ~~~v~~~~y~Gdt~~~~--r--~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 143 PGKVTFGRYTGDTPPEE--R--RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred CCcceeeeecCCCChHH--H--HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 3 77888888765332 1 1223468999999999997644332 345677999999999999865 344555
Q ss_pred HHHHHhh---cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceee-ccchhhhhhccCCcceeeeeccCCCc
Q 000379 190 MKEFYHK---SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT-IEDKTEMEVFVPSAKESCRFYDQSKF 265 (1604)
Q Consensus 190 m~~~~~~---~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t-~~~~~~l~~~~~~p~e~~~~y~~~~~ 265 (1604)
++.+... ....|+++++|||....+ +...++ .+..... +. ....+......+.+.+...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~---------e~~~~l---~~~~f~~~v~-----~~g~~~~~~~~~~~~p~~~ 281 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPG---------EFAEEL---FGRDFEVPVD-----EDGSPRGLRYFVRREPPIR 281 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChH---------HHHHHh---cCCcceeecc-----CCCCCCCceEEEEeCCcch
Confidence 5555433 346799999999965432 222222 2221111 11 0111111112222211110
Q ss_pred cccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Q 000379 266 CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQE 345 (1604)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 345 (1604)
.. ... +
T Consensus 282 ~~-------------------------------------------~~~--------------------------~----- 287 (851)
T COG1205 282 EL-------------------------------------------AES--------------------------I----- 287 (851)
T ss_pred hh-------------------------------------------hhh--------------------------c-----
Confidence 00 000 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHH
Q 000379 346 ECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1604)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ 425 (1604)
..++...+..+....- ..+.++|+|+.++.
T Consensus 288 -------------------------------------------------r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~ 317 (851)
T COG1205 288 -------------------------------------------------RRSALAELATLAALLV-RNGIQTLVFFRSRK 317 (851)
T ss_pred -------------------------------------------------ccchHHHHHHHHHHHH-HcCceEEEEEehhh
Confidence 0000111111111110 23568999999999
Q ss_pred HHHHHHH----HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC
Q 000379 426 AAKVVER----FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL 501 (1604)
Q Consensus 426 ta~~L~~----~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~ 501 (1604)
.++.++. .+......-...+...+|. |...+|..+...|++|++.++++|+.+|-||||.+++.||.+..
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~------~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~ 391 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAG------LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY 391 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeecccc------CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC
Confidence 9998863 3332210001234444444 89999999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHhhhhcccCceEEEE
Q 000379 502 PK-TVSSYIQSRGRARQHNSQFILM 525 (1604)
Q Consensus 502 p~-s~~syiQr~GRA~R~gs~~i~~ 525 (1604)
|. +..++.||.|||||.++....+
T Consensus 392 P~~s~~~~~Q~~GRaGR~~~~~l~~ 416 (851)
T COG1205 392 PGVSVLSFRQRAGRAGRRGQESLVL 416 (851)
T ss_pred CCchHHHHHHhhhhccCCCCCceEE
Confidence 99 9999999999999999653333
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=250.36 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=102.1
Q ss_pred EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHhc
Q 000379 63 IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEI 142 (1604)
Q Consensus 63 Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~ 142 (1604)
++.++||+|||.+++.++.+.+. .++.++||+|+++|+.|+++.+++.++.++..++|+.+... ..+.|....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHH
Confidence 47899999999999888877765 35579999999999999999999999999999999875443 345677665
Q ss_pred C-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---ChH--HHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 143 N-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HPY--TKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 143 ~-~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~--~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
. ..+|||+|+..+ +..+.++++||+||+|+..-. .|+ .+-+..+. ......+++++||||.
T Consensus 74 ~g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPs 140 (505)
T TIGR00595 74 NGEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPS 140 (505)
T ss_pred cCCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCC
Confidence 4 579999999876 356789999999999998622 222 11122221 2234577899999986
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=248.12 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...|.+.+..... ....+||||+++..++.|.+.|.. .++.+..+||. +. +++..+..|+.+..
T Consensus 456 ~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~se~L~~~L~~----~gi~~~~Lhg~------~~--~rE~~ii~~ag~~g 522 (656)
T PRK12898 456 AAKWAAVAARVRELHA-QGRPVLVGTRSVAASERLSALLRE----AGLPHQVLNAK------QD--AEEAAIVARAGQRG 522 (656)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEeeCC------cH--HHHHHHHHHcCCCC
Confidence 4688899998876532 234699999999999999999998 47899999997 44 45556666776667
Q ss_pred eEEEEccccccccCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
+|+|||+++++|+||+ ++. +||+||.|.+.+.|+||+||+||.|.. ++.|+...
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 8999999999999999 666 999999999999999999999999964 55666543
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=238.08 Aligned_cols=410 Identities=19% Similarity=0.232 Sum_probs=241.5
Q ss_pred CCCCCcHHHHHHHHHhh----c-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCC-----eEEEEEecChhh
Q 000379 42 INFIPRIYQLKVFEVAK----R-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFK-----KLIIFLAPTVHL 105 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l----~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~-----~~vl~LvPt~~L 105 (1604)
....+||||+|+++.+- + ..+|++..+|+|||+..+.+|+.++. ..+. .+.+||+|. .|
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLr----q~P~~~~~~~k~lVV~P~-sL 309 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLR----QFPQAKPLINKPLVVAPS-SL 309 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHH----hCcCccccccccEEEccH-HH
Confidence 34578999999998762 1 45899999999999999999998886 3444 678999997 99
Q ss_pred HHHHHHHHHhhcC---CcEEEEECCCCCCccch-hHHHHhc---CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcc
Q 000379 106 VHQQYDVIRVHTD---FEVEEYYGAKGVDEWDS-QCWQKEI---NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178 (1604)
Q Consensus 106 v~Q~~~~i~~~~~---~~v~~~~G~~~~~~~~~-~~w~~~~---~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH 178 (1604)
+..|+++|.++.+ +....++|..+. .|.. ..|.... -..-|++.+++.+.+... .+.+..+++||+||.|
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCC
Confidence 9999999999875 455556665443 2322 2233221 235788999999976554 3556789999999999
Q ss_pred cccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCC--------CCCc-----------------------------cc
Q 000379 179 HATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG--------VSSA-----------------------------MD 221 (1604)
Q Consensus 179 ~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~--------~~~~-----------------------------~~ 221 (1604)
+..+. -..+.+.+ ..-..||++.||+||++|+- ...+ ..
T Consensus 387 rlkN~--~s~~~kaL--~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~ 462 (776)
T KOG0390|consen 387 RLKNS--DSLTLKAL--SSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRE 462 (776)
T ss_pred Cccch--hhHHHHHH--HhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhh
Confidence 99764 22222221 11267999999999999860 0000 00
Q ss_pred HHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhh
Q 000379 222 CEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDD 301 (1604)
Q Consensus 222 ~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 301 (1604)
.++.+.+|-++.+.-+...+. +.+..|.|.-.+.++...+... + ...|..+..
T Consensus 463 ~~~rl~eL~~~t~~fi~rrt~-~il~k~LP~k~e~vv~~n~t~~-----------------------Q---~~~~~~l~~ 515 (776)
T KOG0390|consen 463 REERLQELRELTNKFILRRTG-DILLKYLPGKYEYVVFCNPTPI-----------------------Q---KELYKKLLD 515 (776)
T ss_pred hHHHHHHHHHHHHhheeeccc-chhhhhCCCceeEEEEeCCcHH-----------------------H---HHHHHHHHH
Confidence 011122222222211111111 2333344433333333332221 0 000100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhcc
Q 000379 302 KHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLD 381 (1604)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 381 (1604)
.. ....+... .......|-..|....... +.........+..... ...
T Consensus 516 ~~--~~~~~~~~---~l~~~~~L~k~cnhP~L~~--------------~~~~~~~e~~~~~~~~-------------~~~ 563 (776)
T KOG0390|consen 516 SM--KMRTLKGY---ALELITKLKKLCNHPSLLL--------------LCEKTEKEKAFKNPAL-------------LLD 563 (776)
T ss_pred HH--Hhhhhhcc---hhhHHHHHHHHhcCHHhhc--------------ccccccccccccChHh-------------hhc
Confidence 00 00000000 0000000000000000000 0000000000000000 000
Q ss_pred ccCCcccc-cccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCH
Q 000379 382 FGFDYSKA-VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTP 460 (1604)
Q Consensus 382 ~~~~~~~~-~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~ 460 (1604)
. ...+. ......+.|+..|+.++...+.....++.+-.+.+.+.+.+..+++. .|+.+..++|+ |+.
T Consensus 564 ~--~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~----~g~~~~rLdG~------~~~ 631 (776)
T KOG0390|consen 564 P--GKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW----RGYEVLRLDGK------TSI 631 (776)
T ss_pred c--cccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh----cCceEEEEcCC------Cch
Confidence 0 00000 11223478999999998666555555666667777777777777765 58899999999 899
Q ss_pred HHHHHHHHHHhCCC---ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 461 KVQKEVLESFRGGK---VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 461 ~~r~~vl~~Fr~g~---~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
++|+.+++.|.+.. .-+|.+|.+.++||++-+++-||.||+.||+..-.|.++||.|.||+ .|.|+..|..++
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 99999999998754 33567899999999999999999999999999999999999999997 455667787764
Q ss_pred H
Q 000379 534 R 534 (1604)
Q Consensus 534 ~ 534 (1604)
.
T Consensus 712 k 712 (776)
T KOG0390|consen 712 K 712 (776)
T ss_pred H
Confidence 3
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=250.48 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++.+.... ..+..+||||+++..++.|.+.|.+ .++....+||. +.+|+..+.+|+.+..
T Consensus 388 ~~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~----~gi~~~~Lna~--------q~~rEa~ii~~ag~~g 454 (745)
T TIGR00963 388 EEKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKE----RGIPHNVLNAK--------NHEREAEIIAQAGRKG 454 (745)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEEeeCC--------hHHHHHHHHHhcCCCc
Confidence 467777777664443 3456899999999999999999998 47888899986 6688999999999999
Q ss_pred eEEEEccccccccCCCC-------ccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVPN-------CSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~-------~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
+|+|||+++++|+||+. ..+||+++.|.|.+.|.|++||+||.|.. ...|+...
T Consensus 455 ~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 455 AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 99999999999999998 55999999999999999999999999964 55555543
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=265.27 Aligned_cols=131 Identities=19% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
....|+++|..++..++ ++++++++|||+|||..++.++..+.. .+++++||+||++|+.|+++.++.+.
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK------KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999887 589999999999999855444333322 24679999999999999999999865
Q ss_pred CCcE---EEEECCCCCCccchhHHHHhcC-CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 118 DFEV---EEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 118 ~~~v---~~~~G~~~~~~~~~~~w~~~~~-~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
++.+ ..++|+.+... ....|..... +++|+|+||+.|.+.+..- .. +++++|+||||++.+
T Consensus 149 ~i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhh
Confidence 4443 34678765432 1223433333 5899999999998876642 22 899999999999976
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=244.23 Aligned_cols=307 Identities=21% Similarity=0.289 Sum_probs=213.2
Q ss_pred CCCCCCCcHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
....|+-++-|..+++.+++ .+=+||++.|-|||-+|+-.+..... .++.|.|||||--|++|.++.
T Consensus 589 ~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 589 ASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHhHHHHHHH
Confidence 34578889999999999874 67899999999999999987665443 557799999999999999999
Q ss_pred HHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 189 (1604)
|+..+ +++|..+.--.+......-.-.-.-+..||||+|...| +..+.+.++.|||+||-||..-.|
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGVk~----- 732 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGVKH----- 732 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCccH-----
Confidence 99754 45555554333222211111122235789999998766 566889999999999999996543
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc-chhhhhhccCCcceeeeeccCCCcccc
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE-DKTEMEVFVPSAKESCRFYDQSKFCGS 268 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~ 268 (1604)
++.+........+|-|||||+... +.-.+..+-.+ |.+.||. +|-.+..|+.
T Consensus 733 -KEkLK~Lr~~VDvLTLSATPIPRT-------L~Msm~GiRdl--SvI~TPP~~R~pV~T~V~----------------- 785 (1139)
T COG1197 733 -KEKLKELRANVDVLTLSATPIPRT-------LNMSLSGIRDL--SVIATPPEDRLPVKTFVS----------------- 785 (1139)
T ss_pred -HHHHHHHhccCcEEEeeCCCCcch-------HHHHHhcchhh--hhccCCCCCCcceEEEEe-----------------
Confidence 333344456789999999999642 11111100000 0111221 1111111000
Q ss_pred chhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Q 000379 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECE 348 (1604)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 348 (1604)
.+
T Consensus 786 -----------~~------------------------------------------------------------------- 787 (1139)
T COG1197 786 -----------EY------------------------------------------------------------------- 787 (1139)
T ss_pred -----------cC-------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHH-HHHhhCCCCCcEEEEEEchHHHH
Q 000379 349 IYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAA 427 (1604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~-lL~~~~~~~~~~~IIFv~~r~ta 427 (1604)
++. .+.+ ++.+. ..++++..-+|++.+.
T Consensus 788 -----------------------------------------------d~~--~ireAI~REl--~RgGQvfYv~NrV~~I 816 (1139)
T COG1197 788 -----------------------------------------------DDL--LIREAILREL--LRGGQVFYVHNRVESI 816 (1139)
T ss_pred -----------------------------------------------ChH--HHHHHHHHHH--hcCCEEEEEecchhhH
Confidence 000 0000 11111 2345777778888998
Q ss_pred HHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC-CHH
Q 000379 428 KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVS 506 (1604)
Q Consensus 428 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~-s~~ 506 (1604)
..+...|+.+ .+..++.+.||. |+.++-++++.+|-+|+.+|||||.+.|.|||||++|.+|.-+... -+.
T Consensus 817 e~~~~~L~~L--VPEarI~vaHGQ------M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLs 888 (1139)
T COG1197 817 EKKAERLREL--VPEARIAVAHGQ------MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLA 888 (1139)
T ss_pred HHHHHHHHHh--CCceEEEEeecC------CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHH
Confidence 8888888875 356789999999 9999999999999999999999999999999999999998766543 688
Q ss_pred HHHHHhhhhcccCce-EEEEE
Q 000379 507 SYIQSRGRARQHNSQ-FILML 526 (1604)
Q Consensus 507 syiQr~GRA~R~gs~-~i~~v 526 (1604)
+..|-|||+||.+.+ |..|+
T Consensus 889 QLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 889 QLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred HHHHhccccCCccceEEEEEe
Confidence 999999999999876 33333
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=246.01 Aligned_cols=338 Identities=19% Similarity=0.237 Sum_probs=197.1
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh----c
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH----T 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~----~ 117 (1604)
.+.|||+|..+.+... .+.+||.+|||+|||.+|++++..++. .+...+++|..||.++++|.+++++++ +
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~----~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID----QGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH----hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 6789999998865444 366899999999999999988776554 333456999999999999999998752 2
Q ss_pred -CCcEEEEECCCCCCc------------------cc-hhHHHHhc----CCCcEEEEcHHHHH-HHHHhcCcCccce---
Q 000379 118 -DFEVEEYYGAKGVDE------------------WD-SQCWQKEI----NKNDVLVMTPQILL-DALRKAFLSLDIV--- 169 (1604)
Q Consensus 118 -~~~v~~~~G~~~~~~------------------~~-~~~w~~~~----~~~~ViV~T~q~Ll-~~l~~~~~~l~~i--- 169 (1604)
...+...||....+. |. ...|-... --.+|+|+|...++ ..+......+..+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 356777777643210 00 01343311 13699999996665 3343322222223
Q ss_pred -eEEEEeCcccccCCChHHHHHHHHHhh-cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhh
Q 000379 170 -CFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEME 247 (1604)
Q Consensus 170 -~llI~DEaH~~~~~~~~~~im~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~ 247 (1604)
++|||||+|-+-. -+..++...+.. .....+++.||||+... ....|-..++... ..
T Consensus 440 ~svvIiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~-----------~r~~L~~a~~~~~-------~~- 498 (878)
T PRK09694 440 RSVLIVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPAT-----------LKQKLLDTYGGHD-------PV- 498 (878)
T ss_pred cCeEEEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHH-----------HHHHHHHHhcccc-------cc-
Confidence 4899999999821 223344433322 23346799999997521 1222222221100 00
Q ss_pred hccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000379 248 VFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLI 327 (1604)
Q Consensus 248 ~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~ 327 (1604)
.....|....... ... ...+. ..
T Consensus 499 -------~~~~~YPlvt~~~-----~~~--~~~~~----------------~~--------------------------- 521 (878)
T PRK09694 499 -------ELSSAYPLITWRG-----VNG--AQRFD----------------LS--------------------------- 521 (878)
T ss_pred -------ccccccccccccc-----ccc--ceeee----------------cc---------------------------
Confidence 0000010000000 000 00000 00
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHH
Q 000379 328 CAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL 407 (1604)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~ 407 (1604)
. . ...... .. .+.. .........+....+..+++
T Consensus 522 -----------------------------------~---~-~~~~~~-~~-~v~v-----~~~~~~~~~~~~~~l~~i~~ 555 (878)
T PRK09694 522 -----------------------------------A---H-PEQLPA-RF-TIQL-----EPICLADMLPDLTLLQRMIA 555 (878)
T ss_pred -----------------------------------c---c-ccccCc-ce-EEEE-----EeeccccccCHHHHHHHHHH
Confidence 0 0 000000 00 0000 00000000111112222222
Q ss_pred hhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHH----HHHHHHH-hCCC---ceEEE
Q 000379 408 SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ----KEVLESF-RGGK---VNLLF 479 (1604)
Q Consensus 408 ~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r----~~vl~~F-r~g~---~~iLI 479 (1604)
.. ..+.+++||||++..|..+++.|++... ....+..+||. +...+| +++++.| ++|+ ..|||
T Consensus 556 ~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~~~~v~llHsr------f~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 556 AA--NAGAQVCLICNLVDDAQKLYQRLKELNN-TQVDIDLFHAR------FTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HH--hcCCEEEEEECCHHHHHHHHHHHHhhCC-CCceEEEEeCC------CCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 22 2345899999999999999999986411 23578999998 777777 4678889 7776 47999
Q ss_pred EccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCc
Q 000379 480 ATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1604)
Q Consensus 480 aT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs 520 (1604)
||+|+|.|||| +++++|....| ..+++||.||++|.+.
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999999 58999998777 6799999999999874
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=251.69 Aligned_cols=314 Identities=20% Similarity=0.224 Sum_probs=192.5
Q ss_pred CCCCcHHHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC----hhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT----VHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt----~~Lv~Q~~~~i~~~~ 117 (1604)
.+.-..+-.++++.+.++. +||+++||||||...-.++.+. ..+....+++.-|. ++|+.|.++++...+
T Consensus 72 ~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-----g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 72 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-----GRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-----CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3444667777888777644 6788999999999533222221 12223345666674 577777777776544
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc-ccCCChHHHHHHHHHhh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~~~~~ 196 (1604)
|-.|+.-. ..+ +..-.+++|+|||+++|++.+..+.. ++++++||+||||. ..+..-.-..++.....
T Consensus 147 G~~VGY~v---rf~-------~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 147 GGCVGYKV---RFN-------DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred cceeceee---cCc-------cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 44332211 111 11123689999999999999887644 89999999999995 44432222233433221
Q ss_pred cCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhh
Q 000379 197 SDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLE 275 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~ 275 (1604)
.+..++++||||... ..+.+.+ ++.++.+..+. .|. ...|.+...
T Consensus 216 -rpdlKvILmSATid~--------------e~fs~~F~~apvI~V~Gr~-------~pV--ei~y~p~~~---------- 261 (1294)
T PRK11131 216 -RPDLKVIITSATIDP--------------ERFSRHFNNAPIIEVSGRT-------YPV--EVRYRPIVE---------- 261 (1294)
T ss_pred -CCCceEEEeeCCCCH--------------HHHHHHcCCCCEEEEcCcc-------ccc--eEEEeeccc----------
Confidence 134689999999631 1223322 22222221110 011 111110000
Q ss_pred hhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q 000379 276 VSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL 355 (1604)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1604)
... .
T Consensus 262 ------------------------~~~--~-------------------------------------------------- 265 (1294)
T PRK11131 262 ------------------------EAD--D-------------------------------------------------- 265 (1294)
T ss_pred ------------------------ccc--h--------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHh
Q 000379 356 QCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435 (1604)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~ 435 (1604)
.. ...+..+++.+..........+|||++++..++.+.+.|.
T Consensus 266 ~~--------------------------------------~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~ 307 (1294)
T PRK11131 266 TE--------------------------------------RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALN 307 (1294)
T ss_pred hh--------------------------------------HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 00 0011111111111111234579999999999999999998
Q ss_pred hCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcC---------------
Q 000379 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFD--------------- 500 (1604)
Q Consensus 436 ~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD--------------- 500 (1604)
.. .+....+..+||. |++.+|..+++. .|..+|||||+++|.|||||++++||+++
T Consensus 308 ~~-~~~~~~VlpLhg~------Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~ 378 (1294)
T PRK11131 308 KL-NLRHTEILPLYAR------LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQR 378 (1294)
T ss_pred hc-CCCcceEeecccC------CCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCccc
Confidence 74 2334557788998 899999999986 57899999999999999999999999986
Q ss_pred CC---CCHHHHHHHhhhhcccCc-eEEEEEecc
Q 000379 501 LP---KTVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 501 ~p---~s~~syiQr~GRA~R~gs-~~i~~v~~~ 529 (1604)
+| -|..+|+||+|||||.+. .+|.++++.
T Consensus 379 Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~ 411 (1294)
T PRK11131 379 LPIEPISQASANQRKGRCGRVSEGICIRLYSED 411 (1294)
T ss_pred CCeeecCHhhHhhhccccCCCCCcEEEEeCCHH
Confidence 33 355789999999999864 466776643
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=232.40 Aligned_cols=344 Identities=17% Similarity=0.196 Sum_probs=212.3
Q ss_pred CCCCCcHHHHHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 42 INFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
....||.||..|+.+..+ +.++++|.||+|||.+|+.+|..++. .+..++||||+.+++|++|.+..+.+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r----~~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK----SGWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh----cchhheeeEEechHHHHHHHHHHHHH
Confidence 567899999999987642 55999999999999999999988876 56678899999999999999999999
Q ss_pred hcCC--cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-----CcCccceeEEEEeCcccccCCChHHH
Q 000379 116 HTDF--EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----FLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 116 ~~~~--~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-----~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+.+. .+..+.+. ..+. .++|.|+|+|.+...+.+. .+....++|||+||||+-.-. -|..
T Consensus 238 ~~P~~~~~n~i~~~-~~~~-----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~~~ 304 (875)
T COG4096 238 FLPFGTKMNKIEDK-KGDT-----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EWSS 304 (875)
T ss_pred hCCCccceeeeecc-cCCc-----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hhHH
Confidence 8853 33333332 2221 5799999999999888765 344556999999999998643 5667
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCc-ceeee--eccCCC
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSA-KESCR--FYDQSK 264 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p-~e~~~--~y~~~~ 264 (1604)
|+..|- ..++||||||-......+ -..+ +..++..+..+.+...+--| ....+ ..+..-
T Consensus 305 I~dYFd------A~~~gLTATP~~~~d~~T-----------~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G 367 (875)
T COG4096 305 ILDYFD------AATQGLTATPKETIDRST-----------YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDG 367 (875)
T ss_pred HHHHHH------HHHHhhccCccccccccc-----------ccccCCCcceeecHHHHhhccccCCCCceEEeeeccccC
Confidence 777652 345677999975321111 1122 44455555555444322222 11111 111110
Q ss_pred ccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH
Q 000379 265 FCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQ 344 (1604)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~ 344 (1604)
.....+.+.....+... |-
T Consensus 368 ~~~~~~serek~~g~~i---------------------------------------------~~---------------- 386 (875)
T COG4096 368 WKPDAGSEREKLQGEAI---------------------------------------------DE---------------- 386 (875)
T ss_pred cCcCccchhhhhhcccc---------------------------------------------Cc----------------
Confidence 00000000000000000 00
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhC-CCCCcEEEEEEch
Q 000379 345 EECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFG-KSTQVLCIIFVER 423 (1604)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~~~~IIFv~~ 423 (1604)
+..... ...++.... .......-...+-+.+.... ...-.|+||||.+
T Consensus 387 ------------------------dd~~~~------~~d~dr~~v-~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n 435 (875)
T COG4096 387 ------------------------DDQNFE------ARDFDRTLV-IPFRTETVARELTEYLKRGATGDEIGKTIVFAKN 435 (875)
T ss_pred ------------------------cccccc------ccccchhcc-ccchHHHHHHHHHHHhccccCCCccCceEEEeeC
Confidence 000000 000000000 00000111223333333311 1224689999999
Q ss_pred HHHHHHHHHHHhhC-CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC--CceEEEEccccccccCCCCccEEEEcC
Q 000379 424 IIAAKVVERFVKKV-PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 424 r~ta~~L~~~L~~~-~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g--~~~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
..+|+.+...|... |...+--+..++|.. ... +..++.|... --+|.|+.+++..|||+|.|-++|.+-
T Consensus 436 ~dHAe~i~~~~~~~ype~~~~~a~~IT~d~-------~~~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r 507 (875)
T COG4096 436 HDHAERIREALVNEYPEYNGRYAMKITGDA-------EQA-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDR 507 (875)
T ss_pred cHHHHHHHHHHHHhCccccCceEEEEeccc-------hhh-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehh
Confidence 99999999988764 554444567788872 333 3445555543 367999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhhcccC
Q 000379 501 LPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 501 ~p~s~~syiQr~GRA~R~g 519 (1604)
.-.|...|.|++||+-|..
T Consensus 508 ~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 508 KVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhHHHHHHHhcCccccC
Confidence 9999999999999998864
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=248.23 Aligned_cols=316 Identities=19% Similarity=0.179 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+.-..+..++++.+.+ +.+||+++||||||...-.++.+. ..+...+|++.-|.+.-+...+..+.+.++..++
T Consensus 66 LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-----~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 66 LPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-----GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred CCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-----CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 3445566677777765 556889999999999654443332 1233446788889988888888888888888887
Q ss_pred EEECC-CCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc-ccCCChHHHHHHHHHhhcCCC
Q 000379 123 EYYGA-KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH-ATGNHPYTKIMKEFYHKSDNK 200 (1604)
Q Consensus 123 ~~~G~-~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~~~~~~~~~ 200 (1604)
..+|- ...+. ..-.+..|+|||+++|++.+.+.. .++++++|||||||. .....-.-..++...... +.
T Consensus 141 ~~VGY~vR~~~-------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pd 211 (1283)
T TIGR01967 141 EKVGYKVRFHD-------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PD 211 (1283)
T ss_pred eEEeeEEcCCc-------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CC
Confidence 77773 22221 112367899999999999987754 478999999999995 444322222344443222 34
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
.++++||||... ..+.+.++ +.+..+..+. -|. ...|.+....
T Consensus 212 LKlIlmSATld~--------------~~fa~~F~~apvI~V~Gr~-------~PV--ev~Y~~~~~~------------- 255 (1283)
T TIGR01967 212 LKIIITSATIDP--------------ERFSRHFNNAPIIEVSGRT-------YPV--EVRYRPLVEE------------- 255 (1283)
T ss_pred CeEEEEeCCcCH--------------HHHHHHhcCCCEEEECCCc-------ccc--eeEEeccccc-------------
Confidence 689999999631 23333332 2222221110 011 1111100000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
....
T Consensus 256 ------------------~~~~---------------------------------------------------------- 259 (1283)
T TIGR01967 256 ------------------QEDD---------------------------------------------------------- 259 (1283)
T ss_pred ------------------ccch----------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
...+...+.+.+..........+|||++++..++.+.+.|.+..
T Consensus 260 -----------------------------------~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~- 303 (1283)
T TIGR01967 260 -----------------------------------DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRN- 303 (1283)
T ss_pred -----------------------------------hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcC-
Confidence 00011111111111000123579999999999999999998642
Q ss_pred CCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCC----------------
Q 000379 440 LTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK---------------- 503 (1604)
Q Consensus 440 ~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~---------------- 503 (1604)
..++.+..+||. |+.++|..+++.+ +..+|||||+++|.|||||++.+||+++.+.
T Consensus 304 ~~~~~VlpLhg~------Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~ 375 (1283)
T TIGR01967 304 LRHTEILPLYAR------LSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIE 375 (1283)
T ss_pred CCCcEEEeccCC------CCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCc
Confidence 235678889998 8999999986654 2469999999999999999999999998543
Q ss_pred --CHHHHHHHhhhhcccCce-EEEEEecc
Q 000379 504 --TVSSYIQSRGRARQHNSQ-FILMLERG 529 (1604)
Q Consensus 504 --s~~syiQr~GRA~R~gs~-~i~~v~~~ 529 (1604)
|..+|+||.|||||.+.. +|.++++.
T Consensus 376 ~ISkasa~QRaGRAGR~~~G~cyRLyte~ 404 (1283)
T TIGR01967 376 PISQASANQRKGRCGRVAPGICIRLYSEE 404 (1283)
T ss_pred cCCHHHHHHHhhhhCCCCCceEEEecCHH
Confidence 567999999999999854 66666643
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=211.76 Aligned_cols=110 Identities=17% Similarity=0.304 Sum_probs=95.2
Q ss_pred CcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCc
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1604)
Q Consensus 414 ~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~ 493 (1604)
..++||||.+|..++.++-.|.. .|+....+|.. +...+|.++-+++-+|++.|++||...+.|+|-|++
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~----~Gi~A~AYHAG------LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEI----AGIPAMAYHAG------LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhh----cCcchHHHhcc------cccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 35789999999999999888876 57777777766 789999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHHHHHHHhhhhcccCce-EEEE-EeccCHHH
Q 000379 494 SYVIRFDLPKTVSSYIQSRGRARQHNSQ-FILM-LERGNLKQ 533 (1604)
Q Consensus 494 nlVI~fD~p~s~~syiQr~GRA~R~gs~-~i~~-v~~~~~~~ 533 (1604)
..||++|.|.|+..|.|-.|||||.|.. |.-+ +.+.+...
T Consensus 325 RFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 325 RFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred eEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999999999999999999999999965 3333 44554443
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=249.02 Aligned_cols=315 Identities=18% Similarity=0.250 Sum_probs=217.3
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
.-|+-|.+++...+ ++++.|.||||.||.+++.+++.- -.+.+|+|.|.++|++.|...+ ...++....
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------~~gitvVISPL~SLm~DQv~~L-~~~~I~a~~ 333 (941)
T KOG0351|consen 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------LGGVTVVISPLISLMQDQVTHL-SKKGIPACF 333 (941)
T ss_pred cCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------cCCceEEeccHHHHHHHHHHhh-hhcCcceee
Confidence 46899999999777 699999999999999999887543 1237999999999999998888 467888888
Q ss_pred EECCCCCCccchhHHHHhcC---CCcEEEEcHHHHHHH--HHhcCcCccc---eeEEEEeCcccccCC-ChHHHHHHHHH
Q 000379 124 YYGAKGVDEWDSQCWQKEIN---KNDVLVMTPQILLDA--LRKAFLSLDI---VCFIVIDECHHATGN-HPYTKIMKEFY 194 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~~~---~~~ViV~T~q~Ll~~--l~~~~~~l~~---i~llI~DEaH~~~~~-~~~~~im~~~~ 194 (1604)
+.++..... ....|+.... ..+|+..||+.+... +.+-...+.. +.++|+||||+...+ |.|+.-.+..-
T Consensus 334 L~s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 334 LSSIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred ccccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 888765443 2344555543 479999999988432 2222233344 899999999999865 55443333221
Q ss_pred --hhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 195 --HKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 195 --~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
....+...+|+||||-... + -.++-+.|+- ..|....-.++..
T Consensus 413 ~l~~~~~~vP~iALTATAT~~--------v---~~DIi~~L~l---------------~~~~~~~~sfnR~--------- 457 (941)
T KOG0351|consen 413 LLRIRFPGVPFIALTATATER--------V---REDVIRSLGL---------------RNPELFKSSFNRP--------- 457 (941)
T ss_pred HHHhhCCCCCeEEeehhccHH--------H---HHHHHHHhCC---------------CCcceecccCCCC---------
Confidence 1122336799999994211 0 0111111110 0000000000000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
T Consensus 458 -------------------------------------------------------------------------------- 457 (941)
T KOG0351|consen 458 -------------------------------------------------------------------------------- 457 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
+..-++...........+...+..+ ..+..+||+|.+|.+++.+..
T Consensus 458 --------------------------------NL~yeV~~k~~~~~~~~~~~~~~~~--~~~~s~IIYC~sr~~ce~vs~ 503 (941)
T KOG0351|consen 458 --------------------------------NLKYEVSPKTDKDALLDILEESKLR--HPDQSGIIYCLSRKECEQVSA 503 (941)
T ss_pred --------------------------------CceEEEEeccCccchHHHHHHhhhc--CCCCCeEEEeCCcchHHHHHH
Confidence 0000000000011122223333333 345689999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHh
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~ 512 (1604)
.|.+. ++++..+|+. |+.++|..|.++|-.++++|+|||=+.+.|||-|++..||||.+|++...|.|-.
T Consensus 504 ~L~~~----~~~a~~YHAG------l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 504 VLRSL----GKSAAFYHAG------LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred HHHHh----chhhHhhhcC------CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 99984 5778888887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCc--eEEEEEecc
Q 000379 513 GRARQHNS--QFILMLERG 529 (1604)
Q Consensus 513 GRA~R~gs--~~i~~v~~~ 529 (1604)
|||||.|. ..++|+...
T Consensus 574 GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred cccCcCCCcceeEEecchh
Confidence 99999995 466666654
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=233.41 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=108.7
Q ss_pred CCCCcHHHHHHHHHhhc-----------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR-----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-----------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
..-||.||.+++.++.+ ++++++++||||||++++.+++.++. ....+++|||||+..|+.||.+
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----LLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----hcCCCeEEEEECcHHHHHHHHH
Confidence 45589999999987731 46999999999999999999888764 2345679999999999999999
Q ss_pred HHHhhcCCcEEEEECCCCCCccchhHHHHhcC--CCcEEEEcHHHHHHHHHhc--CcCccce-eEEEEeCcccccCCChH
Q 000379 112 VIRVHTDFEVEEYYGAKGVDEWDSQCWQKEIN--KNDVLVMTPQILLDALRKA--FLSLDIV-CFIVIDECHHATGNHPY 186 (1604)
Q Consensus 112 ~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~--~~~ViV~T~q~Ll~~l~~~--~~~l~~i-~llI~DEaH~~~~~~~~ 186 (1604)
.|+.+....+ .+.. +...+...+. ..+|+|+|.|.|.+.+... ....... .+||+|||||.... .+
T Consensus 312 ~f~~~~~~~~---~~~~-----s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~ 382 (667)
T TIGR00348 312 EFQSLQKDCA---ERIE-----SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-EL 382 (667)
T ss_pred HHHhhCCCCC---cccC-----CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HH
Confidence 9998653111 1111 1122223232 4689999999998644321 1112222 28999999998643 56
Q ss_pred HHHHHHHHhhcCCCCcEEEEeccCCCC
Q 000379 187 TKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 187 ~~im~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
...|+.++ +...+|||||||...
T Consensus 383 ~~~l~~~~----p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 383 AKNLKKAL----KNASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHhhC----CCCcEEEEeCCCccc
Confidence 66676543 456899999999864
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-22 Score=202.82 Aligned_cols=121 Identities=38% Similarity=0.436 Sum_probs=98.0
Q ss_pred hHHHHHhhccCCCC--CCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCcccccc
Q 000379 1059 SSLILEALTTLGCC--ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRD 1136 (1604)
Q Consensus 1059 ~~lll~AlT~~s~~--~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~ 1136 (1604)
++++++||||+|+. ...||||||||||++|+++++.++|.++|. +||.++..|+.+|+|.+|+.+|.++||+++|+.
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~ 80 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRW 80 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHh
Confidence 68999999999984 356999999999999999999999999555 899999999999999999999999999999996
Q ss_pred ccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHH
Q 000379 1137 SAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIA 1216 (1604)
Q Consensus 1137 ~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~ 1216 (1604)
.+ +.. .......+|.+||++||+|||+|+|+|.+.
T Consensus 81 ~~---------~~~------------------------------------~~~~~~~~~vlad~feAliGAiyld~G~~~ 115 (128)
T PF14622_consen 81 GP---------GEE------------------------------------KSGGSGSDKVLADVFEALIGAIYLDSGFEA 115 (128)
T ss_dssp -H---------HHH------------------------------------HTTGGG-HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred Cc---------cHh------------------------------------hcCCCCCccHHHhHHHHHHHHHHHHcCHHH
Confidence 32 000 001124578999999999999999999999
Q ss_pred HHHHHHHhC
Q 000379 1217 ALYMMKWLG 1225 (1604)
Q Consensus 1217 a~~~~~~lg 1225 (1604)
|.+|+...-
T Consensus 116 a~~~i~~~i 124 (128)
T PF14622_consen 116 ARKFIQKLI 124 (128)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999876543
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=223.16 Aligned_cols=371 Identities=19% Similarity=0.239 Sum_probs=232.0
Q ss_pred CCCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 40 NSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
....|++-|+|..++..+- ++.++|.+-|.+|||.+|-..|..-+. .+.||++..|-++|.+|-++++...++
T Consensus 124 k~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------~kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------EKQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred cCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------hcCeEEeeChhhhhcchhHHHHHHHhc
Confidence 3457889999999999886 488999999999999999998877665 567899999999999999999987664
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
.|+.++|+...+. ++..+|||.++|.++|.+|.--|..+.+|||||+|-+.+.. -.-+..+-.-..+
T Consensus 198 -DVGLMTGDVTInP-----------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE-RGVVWEETIIllP 264 (1041)
T KOG0948|consen 198 -DVGLMTGDVTINP-----------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE-RGVVWEETIILLP 264 (1041)
T ss_pred -ccceeecceeeCC-----------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc-cceeeeeeEEecc
Confidence 6888999887665 67899999999999999999899999999999999997652 1222222223356
Q ss_pred CCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeee-ccCCCccccchhhhhhhh
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF-YDQSKFCGSDLKGKLEVS 277 (1604)
Q Consensus 199 ~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~-y~~~~~~~~~l~~~~~~~ 277 (1604)
...|.+.||||..+ +..+.+.|..+.+--...+||- | +|+....| |..- ...+...+..
T Consensus 265 ~~vr~VFLSATiPN------A~qFAeWI~~ihkQPcHVVYTd--------y--RPTPLQHyifP~g---gdGlylvVDe- 324 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPN------ARQFAEWICHIHKQPCHVVYTD--------Y--RPTPLQHYIFPAG---GDGLYLVVDE- 324 (1041)
T ss_pred ccceEEEEeccCCC------HHHHHHHHHHHhcCCceEEeec--------C--CCCcceeeeecCC---CCeeEEEEec-
Confidence 77899999999643 3456666666655443334432 1 11111111 1100 0000000000
Q ss_pred hhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000379 278 WSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQC 357 (1604)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (1604)
+..|.+ ..+...+.
T Consensus 325 ---------------k~~Fre-------------dnF~~am~-------------------------------------- 338 (1041)
T KOG0948|consen 325 ---------------KGKFRE-------------DNFQKAMS-------------------------------------- 338 (1041)
T ss_pred ---------------ccccch-------------HHHHHHHH--------------------------------------
Confidence 000000 00000000
Q ss_pred HHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC
Q 000379 358 KYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV 437 (1604)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~ 437 (1604)
.+...-........+................-+.++++.+.. +....+|||+=++..|+.++--+.++
T Consensus 339 ---------~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~---~~~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 339 ---------VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME---RNYLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred ---------HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh---hcCCceEEEEecHhHHHHHHHhhccC
Confidence 000000000000000000000000011112234444444432 23346999999998887776555332
Q ss_pred -----------------------------CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcccccccc
Q 000379 438 -----------------------------PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1604)
Q Consensus 438 -----------------------------~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGI 488 (1604)
|.+.++.+...-|-+.++.++-+--++-+.-.|.+|-+++|+||...+-|+
T Consensus 407 dfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGL 486 (1041)
T KOG0948|consen 407 DFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGL 486 (1041)
T ss_pred cCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhcc
Confidence 222223233333444444557777777788889999999999999999999
Q ss_pred CCCCccEEE----EcCCC----CCHHHHHHHhhhhcccCc----eEEEEEe
Q 000379 489 HVPNCSYVI----RFDLP----KTVSSYIQSRGRARQHNS----QFILMLE 527 (1604)
Q Consensus 489 Dip~~nlVI----~fD~p----~s~~syiQr~GRA~R~gs----~~i~~v~ 527 (1604)
|+|+-.+|+ -||-- -+.-.|||+.|||||.|- -+|+|++
T Consensus 487 NMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 487 NMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred CCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 999887776 35532 266789999999999994 2666665
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=237.38 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=128.6
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
...|+|-++|++++..+. +.+++|++|||+|||+++..+|...+. .+.++++..|.++|++|.+..+...++-
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 368999999999999886 589999999999999999998877655 3445999999999999999999987763
Q ss_pred ---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 120 ---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 120 ---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
.+++++|+..++. .+.|+|||.++|.+++.++...+..+..|||||+|.+.+. .-.-+..+....
T Consensus 189 v~~~vGL~TGDv~IN~-----------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii~ 256 (1041)
T COG4581 189 VADMVGLMTGDVSINP-----------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVIIL 256 (1041)
T ss_pred hhhhccceecceeeCC-----------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc-ccchhHHHHHHh
Confidence 3789999988776 7899999999999999999889999999999999999754 222233333444
Q ss_pred cCCCCcEEEEeccCCC
Q 000379 197 SDNKPKVFGMTASPVV 212 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~ 212 (1604)
.+...++++||||..+
T Consensus 257 lP~~v~~v~LSATv~N 272 (1041)
T COG4581 257 LPDHVRFVFLSATVPN 272 (1041)
T ss_pred cCCCCcEEEEeCCCCC
Confidence 5677799999999653
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=197.52 Aligned_cols=119 Identities=39% Similarity=0.471 Sum_probs=105.3
Q ss_pred HHHHhhccCCCCCCC-CcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccC
Q 000379 1061 LILEALTTLGCCESF-SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAF 1139 (1604)
Q Consensus 1061 lll~AlT~~s~~~~~-n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f 1139 (1604)
++++||||+|+.... ||||||||||+||+++++.++|.++|+.++|.|+..|+.+|||++|+++|.++||++||+..++
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 789999999998776 9999999999999999999999999999999999999999999999999999999999997642
Q ss_pred CCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHHHH
Q 000379 1140 DPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALY 1219 (1604)
Q Consensus 1140 ~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~ 1219 (1604)
... ......+|.+||+|||+|||+|+++|++.|.+
T Consensus 82 ~~~---------------------------------------------~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~ 116 (129)
T smart00535 82 EAI---------------------------------------------SGGRDKPSILADVFEALIGAIYLDSGLEAARE 116 (129)
T ss_pred Hhh---------------------------------------------cCCcccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 110 00014689999999999999999999999999
Q ss_pred HHHHh
Q 000379 1220 MMKWL 1224 (1604)
Q Consensus 1220 ~~~~l 1224 (1604)
|+..+
T Consensus 117 ~i~~~ 121 (129)
T smart00535 117 FIRDL 121 (129)
T ss_pred HHHHH
Confidence 87543
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-19 Score=192.09 Aligned_cols=316 Identities=21% Similarity=0.239 Sum_probs=210.2
Q ss_pred CCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
.-++.++|..+-+.+. +.++||.+-||+|||-+..-.|...+. .+.+|.+..|.+..|-..+..+++-+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhh
Confidence 4578999998877664 489999999999999987777766654 56679999999999999999999876
Q ss_pred -CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHH-HHHHHh
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI-MKEFYH 195 (1604)
Q Consensus 118 -~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i-m~~~~~ 195 (1604)
+..+..+||+..... ...++|+|...|+.... .++++|+||++-. ||..- +-++.-
T Consensus 169 ~~~~I~~Lyg~S~~~f-----------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAF----P~~~d~~L~~Av 226 (441)
T COG4098 169 SNCDIDLLYGDSDSYF-----------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAF----PFSDDQSLQYAV 226 (441)
T ss_pred ccCCeeeEecCCchhc-----------cccEEEEehHHHHHHHh-------hccEEEEeccccc----cccCCHHHHHHH
Confidence 489999999864332 36888888888876644 5899999999987 44322 222211
Q ss_pred --hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhh
Q 000379 196 --KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKG 272 (1604)
Q Consensus 196 --~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~ 272 (1604)
.....-.++.|||||.. +|++.+ ...+.... .-.+|-.+|-....+.
T Consensus 227 ~~ark~~g~~IylTATp~k---------------~l~r~~~~g~~~~~k---lp~RfH~~pLpvPkf~------------ 276 (441)
T COG4098 227 KKARKKEGATIYLTATPTK---------------KLERKILKGNLRILK---LPARFHGKPLPVPKFV------------ 276 (441)
T ss_pred HHhhcccCceEEEecCChH---------------HHHHHhhhCCeeEee---cchhhcCCCCCCCceE------------
Confidence 12344678999999962 333221 11111000 0001111110000000
Q ss_pred hhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000379 273 KLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQ 352 (1604)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (1604)
-.|.|.
T Consensus 277 --------------------------------------------------w~~~~~------------------------ 282 (441)
T COG4098 277 --------------------------------------------------WIGNWN------------------------ 282 (441)
T ss_pred --------------------------------------------------EeccHH------------------------
Confidence 000000
Q ss_pred hhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHH
Q 000379 353 SSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVER 432 (1604)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~ 432 (1604)
+. +..+...+| |..+|+... +.+..++||+++..+.+.++.
T Consensus 283 -------------k~----------------------l~r~kl~~k---l~~~lekq~-~~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 283 -------------KK----------------------LQRNKLPLK---LKRWLEKQR-KTGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred -------------HH----------------------hhhccCCHH---HHHHHHHHH-hcCCcEEEEecchHHHHHHHH
Confidence 00 000011233 344444433 345679999999999999999
Q ss_pred HHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCC--CCHHHHHH
Q 000379 433 FVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP--KTVSSYIQ 510 (1604)
Q Consensus 433 ~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p--~s~~syiQ 510 (1604)
.|+.. +....++++|+. ...|.+.+++||+|++.+||+|.++|+|+-+|+++++|.=.-- -+-.+.+|
T Consensus 324 ~lk~~--~~~~~i~~Vhs~--------d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 324 ALKKK--LPKETIASVHSE--------DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHhh--CCccceeeeecc--------CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 99652 345677888876 5678999999999999999999999999999999987754333 57889999
Q ss_pred HhhhhcccCce---EEEEEeccCHHHHHHHHH
Q 000379 511 SRGRARQHNSQ---FILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 511 r~GRA~R~gs~---~i~~v~~~~~~~~~~l~~ 539 (1604)
-.||+||.-.. -++|+..|..+.+.+..+
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 99999997532 566666676555444333
|
|
| >PRK12371 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-21 Score=215.11 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHhCCccCCHHHHHHHHccCCCCC--CCchH----------------HHHHHhcccChHHHHHHHHHHHc
Q 000379 1249 PRINEIKDIESKIGYEFTVKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKS 1310 (1604)
Q Consensus 1249 ~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~ 1310 (1604)
+....+..||++|||+|+|+.||.+||||+|+.. ..||| +||+++|..++|.++.++..+++
T Consensus 7 ~~~~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~ 86 (235)
T PRK12371 7 LAAATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVN 86 (235)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3455788999999999999999999999999976 45899 79999999999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHhcCCccee
Q 000379 1311 FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKE 1390 (1604)
Q Consensus 1311 ~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~ 1390 (1604)
-..... +...--|++.+ ..|--.-..+. ....+++.+.++.++
T Consensus 87 n~~La~-------ia~~lgL~~~i--~~~~~~~~~~~--~~~~~ilad~~EAli-------------------------- 129 (235)
T PRK12371 87 AETCAA-------IADEIGLHDLI--RTGSDVKKLTG--KRLLNVRADVVEALI-------------------------- 129 (235)
T ss_pred hHHHHH-------HHHHCCcHHHh--ccCcchhhcCC--cccchHHHHHHHHHH--------------------------
Confidence 111100 00000011111 00000000000 000011111111111
Q ss_pred eeeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCCcc
Q 000379 1391 NCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPS 1470 (1604)
Q Consensus 1391 ~~~~~g~~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1470 (1604)
..|++|++ ..+|+..+..+.... .
T Consensus 130 ------------GAiylD~G---------------~~~a~~~i~~~~~~~-~---------------------------- 153 (235)
T PRK12371 130 ------------AAIYLDGG---------------LEAARPFIQRYWQKR-A---------------------------- 153 (235)
T ss_pred ------------HHHHHcCC---------------HHHHHHHHHHHHHHH-H----------------------------
Confidence 23444444 567777776665410 0
Q ss_pred cccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCccccc
Q 000379 1471 CKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTG 1550 (1604)
Q Consensus 1471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~ 1550 (1604)
..+.....|||+.||||||++++..|.|+++++ +||+|.
T Consensus 154 ------------------------------~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~---------~Gp~h~-- 192 (235)
T PRK12371 154 ------------------------------LETDAARRDAKTELQEWAHAQFGVTPVYRVDSR---------SGPDHD-- 192 (235)
T ss_pred ------------------------------hccccccCCHHHHHHHHHHhcCCCCCeEEEEEe---------ecCCCC--
Confidence 000011368999999999999999999999987 899999
Q ss_pred ceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHHH
Q 000379 1551 FSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1595 (1604)
Q Consensus 1551 ~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~~ 1595 (1604)
+.|++.|.+. +...+.|.| +|||+|+|.||+.||..|..
T Consensus 193 -~~F~v~v~v~----~~~~~~g~G-~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 193 -PRFTVEVEVK----GFAPETGEG-RSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred -CeEEEEEEEC----CEEEEEeee-CCHHHHHHHHHHHHHHHhhh
Confidence 8999998873 444566766 67999999999999998864
|
|
| >PRK14718 ribonuclease III; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-21 Score=222.74 Aligned_cols=203 Identities=20% Similarity=0.213 Sum_probs=133.4
Q ss_pred HHHHHHHhCCccCCHHHHHHHHccCCCCCCCchH----------------HHHHHhcccChHHHHHHHHHHHcCCCCCCC
Q 000379 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKPGET 1317 (1604)
Q Consensus 1254 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1317 (1604)
+..||++|||+|+|+.||.+||||+||.. .+|| +||+.||..++|.++.++..+++-.....
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~- 80 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYE- 80 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHH-
Confidence 56799999999999999999999999976 4788 89999999999999999999987222111
Q ss_pred CCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHhcCCcceeeeeeeCc
Q 000379 1318 TDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLRELIELCDSLGYFVKENCTLKGE 1397 (1604)
Q Consensus 1318 ~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~ 1397 (1604)
+....-|++.+ ++|--...+|. ....+++.+.++.+|
T Consensus 81 ------IAr~LGL~d~L--rlg~gE~~sgG--~~~~sILADvFEALI--------------------------------- 117 (467)
T PRK14718 81 ------IAQALNISDGL--RLGEGELRSGG--FRRPSILADAFEAII--------------------------------- 117 (467)
T ss_pred ------HHHHcCchHHH--hhCCcccccCC--CCChhHHHHHHHHHH---------------------------------
Confidence 00011112222 11111111111 001112222222221
Q ss_pred eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccccCCCCCCCCCcccccccCc
Q 000379 1398 MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGT 1477 (1604)
Q Consensus 1398 ~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (1604)
..||++++ ..+++..+..+.... . +.
T Consensus 118 -----GAIYLDsG---------------~e~a~~fI~~ll~p~-i-----------------------~~---------- 143 (467)
T PRK14718 118 -----GAVFLDGG---------------FEAAQGVIKRLYVPI-L-----------------------DH---------- 143 (467)
T ss_pred -----HHHHHccC---------------HHHHHHHHHHHHHHH-H-----------------------hh----------
Confidence 33455554 456777777665410 0 00
Q ss_pred cccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEE
Q 000379 1478 EAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSK 1557 (1604)
Q Consensus 1478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~ 1557 (1604)
.+. .....|||+.||||||++++..|+|.++.+ +||+|. +.|++.
T Consensus 144 ----------------------~d~-~~~~kDyKS~LQE~~Qk~~~~~PeY~li~e---------sGPdH~---k~F~V~ 188 (467)
T PRK14718 144 ----------------------IDP-RTLGKDAKTLLQEYLQGHKIALPTYTVVAT---------HGAAHN---QQFEVE 188 (467)
T ss_pred ----------------------hcc-cccccCHHHHHHHHHHhcCCCCCeeEEeee---------ecCCCC---CeEEEE
Confidence 000 001368999999999999999999999988 899999 899988
Q ss_pred EEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHH
Q 000379 1558 ITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1594 (1604)
Q Consensus 1558 v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~ 1594 (1604)
|.+. +..+.+.|.| +|||.|||.||+.||+.|+
T Consensus 189 V~v~---g~~~~G~G~G-~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 189 CTVP---KLDIKVSGSG-ASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred EEEC---CeeeEEEEEc-CCHHHHHHHHHHHHHHHhc
Confidence 8873 2234456666 6699999999999999986
|
|
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-21 Score=198.75 Aligned_cols=119 Identities=40% Similarity=0.554 Sum_probs=107.8
Q ss_pred HHHHhhccCCCCCC---CCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccc
Q 000379 1061 LILEALTTLGCCES---FSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137 (1604)
Q Consensus 1061 lll~AlT~~s~~~~---~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~ 1137 (1604)
++++||||+|+... .||||||||||++|+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||++||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 68999999999765 899999999999999999999999999999999999999999999999999999999999977
Q ss_pred cCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHH
Q 000379 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAA 1217 (1604)
Q Consensus 1138 ~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a 1217 (1604)
+.... ......+|.+||+|||||||+|+++|.+.|
T Consensus 82 ~~~~~---------------------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~~~~ 116 (133)
T cd00593 82 KGEEK---------------------------------------------SGGRLRPKILADVFEALIGAIYLDGGFEAA 116 (133)
T ss_pred chHhh---------------------------------------------cCCcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 52211 012367899999999999999999999999
Q ss_pred HHHHHHh
Q 000379 1218 LYMMKWL 1224 (1604)
Q Consensus 1218 ~~~~~~l 1224 (1604)
.+|+.++
T Consensus 117 ~~~i~~~ 123 (133)
T cd00593 117 RKFLLRL 123 (133)
T ss_pred HHHHHHH
Confidence 9999886
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=205.96 Aligned_cols=170 Identities=24% Similarity=0.285 Sum_probs=123.8
Q ss_pred CCchHHHHHHHHhcCCcceeeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCC
Q 000379 1371 LPPLRELIELCDSLGYFVKENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGA 1447 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~~~~~~-~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~ 1447 (1604)
+.|++.|+|++.+.+..+.+.+.. +|+. +.|+++|.++ ++.+.|.|+|||.||++||+.+|..|+.. .
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg--~~~a~GeG~sKK~AKh~AA~~~L~~lk~l-------~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG--EITATGEGKSKKLAKHRAAEALLKELKKL-------P 108 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe--eeEEecCCCchhHHHHHHHHHHHHHHhcC-------C
Confidence 899999999999999998877665 5664 7788888886 48999999999999999999999999971 1
Q ss_pred CCCCcCCCccccCCCCCCCCCcccccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCc
Q 000379 1448 SNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPT 1527 (1604)
Q Consensus 1448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~ 1527 (1604)
.........-.. ..++.... . + + .+ .++......||+++|||+||+++|+.|+
T Consensus 109 ~l~~v~k~~~~~---~~~~~~~~----------~-------~----~--q~-~d~~~~~~~NPI~~L~e~~q~k~~k~P~ 161 (339)
T KOG3732|consen 109 PLANVRKDSLKF---AKMKSSGV----------K-------K----D--QP-GDPEYGQVLNPIGRLQELAQAKKWKLPE 161 (339)
T ss_pred CccccccCcccc---cccccCCc----------c-------c----c--CC-CCcccccccChHHHHHHHHHHhCCCCCc
Confidence 000000000000 00000000 0 0 0 00 0111122578899999999999999999
Q ss_pred eeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHH
Q 000379 1528 FETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELE 1594 (1604)
Q Consensus 1528 y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~ 1594 (1604)
|+++++ .|++|+ |+||+.|++. .+...|.| +|||.||++||..||..|.
T Consensus 162 yelv~E---------~G~~~~---rEFv~q~sv~-----~~~~~GkG-~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 162 YELVQE---------SGVPHR---REFVIQCSVE-----NFTEEGKG-PSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred eEEEec---------cCCCcc---ceEEEEEEec-----ceeeecCC-chHHHHHHHHHHHHHHHhc
Confidence 999999 899999 9999999884 33445666 6799999999999999886
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=221.05 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=124.0
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
...|+|-.+|++|+..+.+ ..+.|+|+|.+|||++|-..|.-.. ....++++..|-++|.+|-++.|+..++
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~tF~- 365 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKETFG- 365 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHhcc-
Confidence 3578999999999999975 6788999999999999988764322 2456799999999999999999998775
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
.+++++|+..+.. .+.++|||.++|.++|.+|.--+.++..|||||+|-+.+. .-.-+..+..-..+.
T Consensus 366 DvgLlTGDvqinP-----------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 366 DVGLLTGDVQINP-----------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLPR 433 (1248)
T ss_pred ccceeecceeeCC-----------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeeeeeccc
Confidence 3448999876654 7899999999999999999888899999999999988543 223334444445577
Q ss_pred CCcEEEEeccCCC
Q 000379 200 KPKVFGMTASPVV 212 (1604)
Q Consensus 200 ~p~iLgLTATP~~ 212 (1604)
...++.||||..+
T Consensus 434 HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 434 HVNFILLSATVPN 446 (1248)
T ss_pred cceEEEEeccCCC
Confidence 7889999999654
|
|
| >PRK12372 ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-21 Score=219.75 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~ 1587 (1604)
.|||+.||||||++++..|+|+++.+ +||+|. +.|++.|.+. +..+.+.|.| +|||.|||.||+
T Consensus 151 ~D~KS~LQE~~Q~~~~~~P~Y~lv~e---------~Gp~h~---~~F~V~V~v~---g~~~~g~G~G-~SKKeAEQ~AAr 214 (413)
T PRK12372 151 KDAKTLLQEYLQGHKIALPTYTVVAT---------HGAAHN---QQFEVECTVP---KLDVKVSGSG-ASRRAAEQAAAK 214 (413)
T ss_pred CCHHHHHHHHHHhcCCCCCeeEEeee---------ecCCCC---ceEEEEEEEC---CeEEEEEEEe-CCHHHHHHHHHH
Confidence 57999999999999999999999988 899999 8999888873 2234446666 669999999999
Q ss_pred HHHHHHHH
Q 000379 1588 IMLHELER 1595 (1604)
Q Consensus 1588 ~~l~~l~~ 1595 (1604)
.||+.|..
T Consensus 215 ~AL~kL~~ 222 (413)
T PRK12372 215 KALDEVMA 222 (413)
T ss_pred HHHHHHhc
Confidence 99999974
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=222.89 Aligned_cols=160 Identities=24% Similarity=0.349 Sum_probs=116.9
Q ss_pred CCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhh-----CCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKS-----NGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~-----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
-.+...|..+...+++ .|+++|||||+|||-+|++-|.+.+..... .-...++++++|.++||+.|...|.+.
T Consensus 308 ~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkR 387 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKR 387 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhh
Confidence 3488999999999985 999999999999999999977776642111 112346999999999999999998875
Q ss_pred c---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcC---cCccceeEEEEeCcccccCCC-h-HHH
Q 000379 117 T---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF---LSLDIVCFIVIDECHHATGNH-P-YTK 188 (1604)
Q Consensus 117 ~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~---~~l~~i~llI~DEaH~~~~~~-~-~~~ 188 (1604)
+ |+.|...+|+..... ..++..+|+||||+.. +.+.+.. --.+-++++|+||.|...++. | ...
T Consensus 388 la~~GI~V~ElTgD~~l~~-------~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 388 LAPLGITVLELTGDSQLGK-------EQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred ccccCcEEEEecccccchh-------hhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHH
Confidence 4 889999999865432 4456899999999987 2333221 112347899999999996442 2 233
Q ss_pred HHHHHHhh---cCCCCcEEEEeccCC
Q 000379 189 IMKEFYHK---SDNKPKVFGMTASPV 211 (1604)
Q Consensus 189 im~~~~~~---~~~~p~iLgLTATP~ 211 (1604)
|....... ....+|++|||||..
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLP 485 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLP 485 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCC
Confidence 44333332 235699999999964
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-21 Score=192.67 Aligned_cols=114 Identities=40% Similarity=0.586 Sum_probs=91.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCC
Q 000379 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157 (1604)
Q Consensus 1078 ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1157 (1604)
||||||||+||+++++.+||.+||+.+||.||.+|+.+|||.+|+++|.++||+.||+..+|+...|.+|...... .
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~---~ 77 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLN---N 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHH---h
Confidence 8999999999999999999999999999999999999999999999999999999999999998877766110000 0
Q ss_pred CCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCC
Q 000379 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGG 1213 (1604)
Q Consensus 1158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G 1213 (1604)
.. + . .....+...+...+|++||+|||||||+|+|+|
T Consensus 78 ~~----------~-------~--~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 78 GD----------S-------E--SSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -----------------------C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc----------c-------c--cccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 00 0 0 000001114557899999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=186.08 Aligned_cols=470 Identities=17% Similarity=0.220 Sum_probs=256.5
Q ss_pred CCCCCCCCcHHHHHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 39 TNSINFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 39 ~~~~~~~pr~yQ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
+....+.+-|||.|.+.++.. ...|+++++|.|||..++.++.... .+...|++||+++| .||.++
T Consensus 178 P~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-------~ra~tLVvaP~VAl-mQW~nE 249 (791)
T KOG1002|consen 178 PDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-------DRAPTLVVAPTVAL-MQWKNE 249 (791)
T ss_pred cccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------ccCCeeEEccHHHH-HHHHHH
Confidence 334567789999999999864 5689999999999999988766532 23338999999998 689999
Q ss_pred HHhhc--CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh---cC------------cCccceeEEEEe
Q 000379 113 IRVHT--DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK---AF------------LSLDIVCFIVID 175 (1604)
Q Consensus 113 i~~~~--~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~---~~------------~~l~~i~llI~D 175 (1604)
|.+++ .+++-+|+|...... -+.+.+++|+.+|+.++-..+++ |+ +.--.|.-||+|
T Consensus 250 I~~~T~gslkv~~YhG~~R~~n------ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlD 323 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKN------IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILD 323 (791)
T ss_pred HHHhccCceEEEEEecccccCC------HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehh
Confidence 99998 478888999764332 34567999999999999877765 21 112246679999
Q ss_pred CcccccCCC-hHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec--------------
Q 000379 176 ECHHATGNH-PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-------------- 240 (1604)
Q Consensus 176 EaH~~~~~~-~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~-------------- 240 (1604)
|||.+.... .-++.+-.+ ...+.+.||+||.++. ...+..|-+.|+..-++.
T Consensus 324 EAH~IK~R~snTArAV~~L-----~tt~rw~LSGTPLQNr--------igElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ 390 (791)
T KOG1002|consen 324 EAHNIKDRQSNTARAVFAL-----ETTYRWCLSGTPLQNR--------IGELYSLIRFLNINPFSYYFCTKCDCASLDWK 390 (791)
T ss_pred hhcccccccccHHHHHHhh-----HhhhhhhccCCcchhh--------HHHHHHHHHHHccCcchhhhhhhcccccccee
Confidence 999997542 222222221 3467899999999875 234455554444432211
Q ss_pred -cchhhhhhccCCcceeeeeccCCCccc--------cch--hhhhhhh-------hhhhc--------hhHHHHHH----
Q 000379 241 -EDKTEMEVFVPSAKESCRFYDQSKFCG--------SDL--KGKLEVS-------WSKFD--------ASLSKLQG---- 290 (1604)
Q Consensus 241 -~~~~~l~~~~~~p~e~~~~y~~~~~~~--------~~l--~~~~~~~-------~~~~~--------~~~~~l~~---- 290 (1604)
++|..-....+.+.....++.....-+ .+. ...+... ..++. +.+.....
T Consensus 391 ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn 470 (791)
T KOG1002|consen 391 FTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFN 470 (791)
T ss_pred ecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhh
Confidence 111110011111111111111110000 000 0000000 00000 00000000
Q ss_pred -h----HhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHhhhh----------HHHHHHHH
Q 000379 291 -S----QLNCYKDMDDKHKTLR--KQLSDYHAKILYCLDELGLICAYEAV--KICLEKVLKA----------QEECEIYR 351 (1604)
Q Consensus 291 -~----~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~lG~~~~~~~~--~~~~~~~~~~----------~~~~~~~~ 351 (1604)
. -.+.|.+-..+...+. .-+.+.+..+...+..+-..+..... ......+... .+..+.+-
T Consensus 471 ~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i 550 (791)
T KOG1002|consen 471 EEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYI 550 (791)
T ss_pred hHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhH
Confidence 0 0111111111222221 11223333333322222111110000 0000000000 00000000
Q ss_pred Hhh---HHHH----HHHHHHHHHHhhhcCccchh-hccccC--------------Cccc--ccccCCCCHHHHHHHHHHH
Q 000379 352 QSS---LQCK----YFLEEVLHVIGSALPLADKI-FLDFGF--------------DYSK--AVDLGYISTKLHELLQLFL 407 (1604)
Q Consensus 352 ~~~---~~~~----~~~~~~~~~l~~~~~~~~~~-~~~~~~--------------~~~~--~~~~~~~s~K~~~L~~lL~ 407 (1604)
... ..|+ +|+........-.++..... .++.+. .... .......|.|+++|.+-|.
T Consensus 551 ~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~ 630 (791)
T KOG1002|consen 551 ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELY 630 (791)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHH
Confidence 000 0111 11111111111001100000 000000 0001 1123446889999998765
Q ss_pred hhCC-CCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceE-EEEcccc
Q 000379 408 SFGK-STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNL-LFATDVI 484 (1604)
Q Consensus 408 ~~~~-~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~i-LIaT~vl 484 (1604)
...+ ....+.|||.+.-...+.+...|.+ .|+.|.-+.|. |++..|..+++.|.+. .|.| |++-.++
T Consensus 631 ~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k----aGfscVkL~Gs------Ms~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 631 FLRERDRTAKSIVFSQFTSMLDLIEWRLGK----AGFSCVKLVGS------MSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHcccchhhhhHHHHHHHHHHHHHHhhc----cCceEEEeccC------CChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 4332 3446889999999999999888887 68999999999 9999999999999986 4664 6788999
Q ss_pred ccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHHHHHHHhh
Q 000379 485 EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIRSERSV 547 (1604)
Q Consensus 485 eeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~~~~e~~~ 547 (1604)
+..+|+..+..|+.+|+.||+.--.|...|..|.|+. ++.|.-+...+ +++-++.+++..|
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE--~kIieLQeKKa~m 765 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE--EKIIELQEKKANM 765 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH--HHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999984 66665544444 3333444443334
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=218.20 Aligned_cols=436 Identities=17% Similarity=0.160 Sum_probs=249.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 27 GHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
+|.+......++.....-++++||...++++.. -|.|++.+||.|||...+.+|.++++.....+ + -+|+||
T Consensus 376 AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~G--P-~LvivP 452 (1157)
T KOG0386|consen 376 AHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQG--P-FLIIVP 452 (1157)
T ss_pred cchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCC--C-eEEecc
Confidence 334444444556666667999999999999963 67999999999999999999999987433333 3 699999
Q ss_pred ChhhHHHHHHHHHhhc-CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccc
Q 000379 102 TVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHA 180 (1604)
Q Consensus 102 t~~Lv~Q~~~~i~~~~-~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~ 180 (1604)
+..|++ |..+|..+. .+..+.+.|..... +.-.-+....+.+|+++|++-+.. .+..+.--+|..+|+||.|++
T Consensus 453 lstL~N-W~~Ef~kWaPSv~~i~YkGtp~~R--~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 453 LSTLVN-WSSEFPKWAPSVQKIQYKGTPQQR--SGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRM 527 (1157)
T ss_pred ccccCC-chhhccccccceeeeeeeCCHHHH--hhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccc
Confidence 988876 899998876 46777777753221 111122333789999999998865 333444456889999999999
Q ss_pred cCCCh-HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC---ceeeccchhhhhhccCCccee
Q 000379 181 TGNHP-YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDS---QVFTIEDKTEMEVFVPSAKES 256 (1604)
Q Consensus 181 ~~~~~-~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~---~i~t~~~~~~l~~~~~~p~e~ 256 (1604)
...+. ....+.. ....+++|+||+||..++ +.+|+.+|+- .|+. ....+..+...|-..
T Consensus 528 KNa~~KLt~~L~t----~y~~q~RLLLTGTPLQN~-----------LpELWaLLNFlLP~IFn--S~~~FeqWFN~PFan 590 (1157)
T KOG0386|consen 528 KNAICKLTDTLNT----HYRAQRRLLLTGTPLQNN-----------LPELWALLNFLLPNIFN--SCKAFEQWFNQPFAN 590 (1157)
T ss_pred cchhhHHHHHhhc----cccchhhhhhcCChhhhc-----------cHHHHHHHHHhccchhh--hHhHHHHHhhhhhhh
Confidence 75432 1222222 235689999999999875 4555555442 2221 112222222222110
Q ss_pred eeeccCCCccccchhhhhhhhhhhhchhHH-HHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Q 000379 257 CRFYDQSKFCGSDLKGKLEVSWSKFDASLS-KLQGSQLNCYKDMDDKHKTLRKQLSDYHAKIL-YCLDELGLICAYEAVK 334 (1604)
Q Consensus 257 ~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lG~~~~~~~~~ 334 (1604)
.- +..........-.++....-+-+++. ++.... -..++++++.+.+.-.+....+. .-...-|....
T Consensus 591 tG--ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeV---E~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~----- 660 (1157)
T KOG0386|consen 591 TG--EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEV---EQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLK----- 660 (1157)
T ss_pred cC--CcccccchHHHHHHHHHHHhhhHHHHHhhhHHH---hhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCc-----
Confidence 00 00000000000011111111111111 111110 11122222222111111111100 00000000000
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000379 335 ICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQ 414 (1604)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~ 414 (1604)
.. ...........+++-.....+. ...-- ..+-...............+.|+..|-.+|.+.. ..+
T Consensus 661 -------d~----~~g~~g~k~L~N~imqLRKiCN-HP~lf-~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk-atg 726 (1157)
T KOG0386|consen 661 -------DT----AKGKKGYKPLFNTIMQLRKLCN-HPYLF-ANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK-ATG 726 (1157)
T ss_pred -------Cc----hhccccchhhhhHhHHHHHhcC-Cchhh-hhhccccccccChhHHHHhccHHHHHHhhhHHHH-hcC
Confidence 00 0000000011111111111110 00000 0000000000001123345789999999998776 567
Q ss_pred cEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC---ceEEEEccccccccCCC
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---VNLLFATDVIEEGMHVP 491 (1604)
Q Consensus 415 ~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~---~~iLIaT~vleeGIDip 491 (1604)
.|++.|++.......+..+|.- .+++...+.|.+ ..++|-+.++.|..-. ..+|.+|..++.|+|++
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~----~~~kYlRLDG~T------K~~eRg~ll~~FN~Pds~yf~FllstragglglNlQ 796 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQI----REYKYLRLDGQT------KVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhh----hhhheeeecCCc------chhhHHHHHHHhcCCCCceeeeeeeecccccccchh
Confidence 8999999988888888888864 578888899984 6888999999998764 34678999999999999
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 492 NCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 492 ~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
.++.||.||.-|++..+.|+..||.|.|++
T Consensus 797 tadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 797 TADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred hcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 999999999999999999999999999985
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=190.48 Aligned_cols=294 Identities=18% Similarity=0.292 Sum_probs=196.9
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
..||.|.+++...+ +.+..+++|||.||++++.+++.- ..+.+|++||...|++.|.-.++ .+|+....
T Consensus 94 kfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------adg~alvi~plislmedqil~lk-qlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------ADGFALVICPLISLMEDQILQLK-QLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------cCCceEeechhHHHHHHHHHHHH-HhCcchhh
Confidence 46999999999887 699999999999999999998542 23458999999999999988887 56777666
Q ss_pred EECCCCCCccchhHHH-Hhc----CCCcEEEEcHHHHH------HHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHH
Q 000379 124 YYGAKGVDEWDSQCWQ-KEI----NKNDVLVMTPQILL------DALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMK 191 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~-~~~----~~~~ViV~T~q~Ll------~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~ 191 (1604)
+..+.+... ..|- ..+ .....+..||+.+. +.|.+ .+....+.+|-+||+|+|..+ |.++...+
T Consensus 164 lnansske~---~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaidevhccsqwghdfr~dy~ 239 (695)
T KOG0353|consen 164 LNANSSKEE---AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAIDEVHCCSQWGHDFRPDYK 239 (695)
T ss_pred ccCcccHHH---HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeecceeehhhhCcccCcchH
Confidence 665544332 1121 111 34689999999773 23332 345667899999999999855 44332221
Q ss_pred H--HHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccc
Q 000379 192 E--FYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSD 269 (1604)
Q Consensus 192 ~--~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~ 269 (1604)
. .+...-+...|+|||||-.... .+-...+--++..+ .++.. ..+|. .+|....-
T Consensus 240 ~l~ilkrqf~~~~iigltatatn~v-----l~d~k~il~ie~~~---tf~a~--------fnr~n---l~yev~qk---- 296 (695)
T KOG0353|consen 240 ALGILKRQFKGAPIIGLTATATNHV-----LDDAKDILCIEAAF---TFRAG--------FNRPN---LKYEVRQK---- 296 (695)
T ss_pred HHHHHHHhCCCCceeeeehhhhcch-----hhHHHHHHhHHhhh---eeecc--------cCCCC---ceeEeeeC----
Confidence 1 1112235678999999965321 00011111122111 11110 01110 11110000
Q ss_pred hhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Q 000379 270 LKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEI 349 (1604)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1604)
T Consensus 297 -------------------------------------------------------------------------------- 296 (695)
T KOG0353|consen 297 -------------------------------------------------------------------------------- 296 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHH-hhCCCCCcEEEEEEchHHHHH
Q 000379 350 YRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFL-SFGKSTQVLCIIFVERIIAAK 428 (1604)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~~~~IIFv~~r~ta~ 428 (1604)
++...+-.+.+.++++ .| .+..+||||-++..++
T Consensus 297 ------------------------------------------p~n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 297 ------------------------------------------PGNEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCE 331 (695)
T ss_pred ------------------------------------------CCChHHHHHHHHHHhcccc---CCCcceEEEeccccHH
Confidence 0000111122222221 12 2346899999999999
Q ss_pred HHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHH
Q 000379 429 VVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSY 508 (1604)
Q Consensus 429 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~sy 508 (1604)
.+...|+.+ ++....+|.. |.+.++.-+-+.+-.|++.|+|||-..+.|||-|+++.||+..+|.+...|
T Consensus 332 kva~alkn~----gi~a~~yha~------lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksieny 401 (695)
T KOG0353|consen 332 KVAKALKNH----GIHAGAYHAN------LEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENY 401 (695)
T ss_pred HHHHHHHhc----Cccccccccc------cCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHH
Confidence 999999985 7888888887 889999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 000379 509 IQ 510 (1604)
Q Consensus 509 iQ 510 (1604)
.|
T Consensus 402 yq 403 (695)
T KOG0353|consen 402 YQ 403 (695)
T ss_pred HH
Confidence 99
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=189.78 Aligned_cols=396 Identities=14% Similarity=0.123 Sum_probs=226.3
Q ss_pred CCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--c
Q 000379 45 IPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF--E 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~--~ 120 (1604)
.+-|||.+.+..+++ +++++++++|.|||+.|+.++..... ..+ .||+||. .|-.-|++.+.++++. .
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra------Ewp-lliVcPA-svrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA------EWP-LLIVCPA-SVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh------cCc-EEEEecH-HHhHHHHHHHHHhcccccc
Confidence 467999999999974 77999999999999999988766543 333 8999998 6778899999999863 4
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCC
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK 200 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~ 200 (1604)
+.++.++...-. .......|.|++|+.+..+ +..+.-..+.+|||||+|++.....- -.+......+..
T Consensus 270 i~vv~~~~D~~~-------~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktk--r~Ka~~dllk~a 338 (689)
T KOG1000|consen 270 IFVVDKSSDPLP-------DVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTK--RTKAATDLLKVA 338 (689)
T ss_pred eEEEecccCCcc-------ccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchh--hhhhhhhHHHHh
Confidence 455555443221 1122467999999988533 33444556899999999999754211 122222223455
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSK 280 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~ 280 (1604)
-|+|+||+||.... +..+...|..+..++... .-++..-..........|+-..... .+++...+.+
T Consensus 339 khvILLSGTPavSR----P~elytqi~avd~tlfp~------f~efa~rYCd~k~vr~~~Dykg~tn---l~EL~~lL~k 405 (689)
T KOG1000|consen 339 KHVILLSGTPAVSR----PSELYTQIRAVDHTLFPN------FHEFAIRYCDGKQVRFCFDYKGCTN---LEELAALLFK 405 (689)
T ss_pred hheEEecCCcccCC----chhhhhhhhhhccccccc------HHHHHHHhcCccccceeeecCCCCC---HHHHHHHHHH
Confidence 79999999998754 222233333333333221 1122111111222222332211111 1111111100
Q ss_pred hchhHHHHHHhHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 281 FDASLSKLQGSQL-NCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 281 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+. +.+.++ ..+.+++.+-.. +.+. .-|...+.. ...+....+........++ ..
T Consensus 406 ~l-----MIRRlK~dvL~qLPpKrr~-----------Vv~~--~~gr~da~~--~~lv~~a~~~t~~~~~e~~-----~~ 460 (689)
T KOG1000|consen 406 RL-----MIRRLKADVLKQLPPKRRE-----------VVYV--SGGRIDARM--DDLVKAAADYTKVNSMERK-----HE 460 (689)
T ss_pred HH-----HHHHHHHHHHhhCCccceE-----------EEEE--cCCccchHH--HHHHHHhhhcchhhhhhhh-----hH
Confidence 00 000000 011111111000 0000 000000000 0000000000000000000 00
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHh---hCCCCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLS---FGKSTQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~---~~~~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
-+...++. ..--|+....+.|.. +...+..+.+||+......+.|...+.+
T Consensus 461 ~l~l~y~~--------------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~ 514 (689)
T KOG1000|consen 461 SLLLFYSL--------------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK 514 (689)
T ss_pred HHHHHHHH--------------------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH
Confidence 00000000 012356666665544 2345667999999999999999998887
Q ss_pred CCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC-ceE-EEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhh
Q 000379 437 VPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK-VNL-LFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514 (1604)
Q Consensus 437 ~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~-~~i-LIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GR 514 (1604)
+++....+.|. .+...|....+.|...+ +.| +++-.+++.||++.+.++||...++||+--++|.-.|
T Consensus 515 ----r~vg~IRIDGs------t~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 515 ----RKVGSIRIDGS------TPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDR 584 (689)
T ss_pred ----cCCCeEEecCC------CCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhh
Confidence 56677778898 47788999999999764 554 4567788999999999999999999999999999999
Q ss_pred hcccCce----EEEEEeccCHHH
Q 000379 515 ARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 515 A~R~gs~----~i~~v~~~~~~~ 533 (1604)
|+|.|++ .+.|+.+++.++
T Consensus 585 aHRiGQkssV~v~ylvAKgT~Dd 607 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAKGTADD 607 (689)
T ss_pred hhhccccceeeEEEEEecCchHH
Confidence 9999986 556667776654
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=200.83 Aligned_cols=327 Identities=18% Similarity=0.263 Sum_probs=207.8
Q ss_pred CCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 43 NFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
...+||||...+.++.+ +..||++|.|+|||++.+-.+. .-++++|+||.+..-|+||...|..+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---------tikK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---------TIKKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---------eecccEEEEecCccCHHHHHHHHHhhcc
Confidence 45689999999999975 7799999999999998876543 2456799999999999999999999875
Q ss_pred C---cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh--------cCcCccceeEEEEeCcccccCCChHH
Q 000379 119 F---EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK--------AFLSLDIVCFIVIDECHHATGNHPYT 187 (1604)
Q Consensus 119 ~---~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~~ 187 (1604)
+ .+..++.+.. +..-.++.|+|+||.++..--.+ .++.-..|.++|+||+|-.... -++
T Consensus 371 i~d~~i~rFTsd~K---------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~-MFR 440 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK---------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK-MFR 440 (776)
T ss_pred cCccceEEeecccc---------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH-HHH
Confidence 4 4444544321 11234789999999877432111 2455578999999999988432 466
Q ss_pred HHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhh-hhccCCcceeeeeccCCCcc
Q 000379 188 KIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEM-EVFVPSAKESCRFYDQSKFC 266 (1604)
Q Consensus 188 ~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l-~~~~~~p~e~~~~y~~~~~~ 266 (1604)
+++.... .--.||||||.++.++ .|.+|.-+++++.|..+=.+.. ..|+.+-
T Consensus 441 RVlsiv~-----aHcKLGLTATLvREDd---------KI~DLNFLIGPKlYEAnWmdL~~kGhIA~V------------- 493 (776)
T KOG1123|consen 441 RVLSIVQ-----AHCKLGLTATLVREDD---------KITDLNFLIGPKLYEANWMDLQKKGHIAKV------------- 493 (776)
T ss_pred HHHHHHH-----HHhhccceeEEeeccc---------cccccceeecchhhhccHHHHHhCCceeEE-------------
Confidence 6555432 1235999999988653 3445554555444433211000 0000000
Q ss_pred ccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Q 000379 267 GSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEE 346 (1604)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 346 (1604)
+-...||....
T Consensus 494 -------------------------------------------------------qCaEVWCpMt~-------------- 504 (776)
T KOG1123|consen 494 -------------------------------------------------------QCAEVWCPMTP-------------- 504 (776)
T ss_pred -------------------------------------------------------eeeeeecCCCH--------------
Confidence 00112332110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCC-HHHHHHHHHHHhhCCCCCcEEEEEEchHH
Q 000379 347 CEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIS-TKLHELLQLFLSFGKSTQVLCIIFVERII 425 (1604)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ 425 (1604)
....+|+.+-... .. -...++ .|++. .+.|-.|.+..+.++|||.....
T Consensus 505 --------eFy~eYL~~~t~k---------r~------------lLyvMNP~KFra-CqfLI~~HE~RgDKiIVFsDnvf 554 (776)
T KOG1123|consen 505 --------EFYREYLRENTRK---------RM------------LLYVMNPNKFRA-CQFLIKFHERRGDKIIVFSDNVF 554 (776)
T ss_pred --------HHHHHHHhhhhhh---------hh------------eeeecCcchhHH-HHHHHHHHHhcCCeEEEEeccHH
Confidence 0011111100000 00 000112 24433 34444444467789999999876
Q ss_pred HHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC-CceEEEEccccccccCCCCccEEEEcCC-CC
Q 000379 426 AAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG-KVNLLFATDVIEEGMHVPNCSYVIRFDL-PK 503 (1604)
Q Consensus 426 ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g-~~~iLIaT~vleeGIDip~~nlVI~fD~-p~ 503 (1604)
.....+-.|.+ -++.|. -++.+|..+++.|+.+ .+|-++-+.|+...||+|.+|++|+... -.
T Consensus 555 ALk~YAikl~K---------pfIYG~------Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G 619 (776)
T KOG1123|consen 555 ALKEYAIKLGK---------PFIYGP------TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG 619 (776)
T ss_pred HHHHHHHHcCC---------ceEECC------CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc
Confidence 65554433433 246676 4799999999999976 5999999999999999999999998774 45
Q ss_pred CHHHHHHHhhhhcccCce--------EEEEEecc
Q 000379 504 TVSSYIQSRGRARQHNSQ--------FILMLERG 529 (1604)
Q Consensus 504 s~~syiQr~GRA~R~gs~--------~i~~v~~~ 529 (1604)
|-++-.||.||.-|+... |+.+|..+
T Consensus 620 SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 620 SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred chHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 788999999999886531 55566544
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=197.26 Aligned_cols=451 Identities=16% Similarity=0.235 Sum_probs=254.7
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...++.+||...+.++. +-|.|+++++|.|||..++.++.++.+...-++ -.|+++|...| ..|+++|.++
T Consensus 564 l~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwG---PFLVVtpaStL-~NWaqEisrF 639 (1185)
T KOG0388|consen 564 LKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWG---PFLVVTPASTL-HNWAQEISRF 639 (1185)
T ss_pred hhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCC---ceEEeehHHHH-hHHHHHHHHh
Confidence 35689999999999985 589999999999999999999999887333333 37999998666 7799999999
Q ss_pred c-CCcEEEEECCCCCC-----ccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--hHHH
Q 000379 117 T-DFEVEEYYGAKGVD-----EWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTK 188 (1604)
Q Consensus 117 ~-~~~v~~~~G~~~~~-----~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~ 188 (1604)
+ .+++.-+.|+.+-. .|....--......+|+|+|||.++.. ..++.--.|.++|+|||+.+.... .|..
T Consensus 640 lP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSSsS~RWKt 717 (1185)
T KOG0388|consen 640 LPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSSSSSRWKT 717 (1185)
T ss_pred CccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhhhhhHHHH
Confidence 8 48998899986533 233333233456789999999988533 123333468899999999987542 1222
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeec-cchhhhhhccCCcceeeeeccCCCccc
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI-EDKTEMEVFVPSAKESCRFYDQSKFCG 267 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~-~~~~~l~~~~~~p~e~~~~y~~~~~~~ 267 (1604)
++. | .+..+|+||+||+.+. +.+|+.+|+-..-+. ....++..+..+-.|....- .
T Consensus 718 LLs-F-----~cRNRLLLTGTPIQNs-----------MqELWALLHFIMPsLFDshneFseWFSKdIEshAe~------~ 774 (1185)
T KOG0388|consen 718 LLS-F-----KCRNRLLLTGTPIQNS-----------MQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEM------N 774 (1185)
T ss_pred Hhh-h-----hccceeeecCCccchH-----------HHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHh------c
Confidence 222 2 4567899999999864 567777665211000 12223333332222111100 0
Q ss_pred cch-hhhhhhhhhhhchhHHHH-HHhHhhhh---------hhhhhHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHH
Q 000379 268 SDL-KGKLEVSWSKFDASLSKL-QGSQLNCY---------KDMDDKHKTLRKQLSDYHAKIL--YCLDELGLICAYEAVK 334 (1604)
Q Consensus 268 ~~l-~~~~~~~~~~~~~~~~~l-~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~--~~~~~lG~~~~~~~~~ 334 (1604)
..+ .+.+.....-+.++|.+. .....+.+ -++...-+.+-+.+++....+. ..+-.+.-.|-..-.-
T Consensus 775 ~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLF 854 (1185)
T KOG0388|consen 775 TTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLF 854 (1185)
T ss_pred CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHH
Confidence 001 111111111112222211 11111111 1111111111111111111000 0111111111100000
Q ss_pred HHHHHh-------hhhHHHH-H------HHHHhhHHHH-----------HHHHHHHHHHhhhcCc---------------
Q 000379 335 ICLEKV-------LKAQEEC-E------IYRQSSLQCK-----------YFLEEVLHVIGSALPL--------------- 374 (1604)
Q Consensus 335 ~~~~~~-------~~~~~~~-~------~~~~~~~~~~-----------~~~~~~~~~l~~~~~~--------------- 374 (1604)
.-++.. .....+. . .|........ +++.++ +.+...+..
T Consensus 855 er~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~-~g~~~~v~Geg~~~w~~~l~~e~k 933 (1185)
T KOG0388|consen 855 ERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERI-NGLRRIVNGEGPNAWYLRLSLEFK 933 (1185)
T ss_pred hhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHH-hhhHhhhcCCCcchhcccceeeec
Confidence 000000 0000000 0 0000000000 000000 000000000
Q ss_pred -----------------------------cchhh-------------------------ccccCCcc------ccc----
Q 000379 375 -----------------------------ADKIF-------------------------LDFGFDYS------KAV---- 390 (1604)
Q Consensus 375 -----------------------------~~~~~-------------------------~~~~~~~~------~~~---- 390 (1604)
....+ +....+.. ..+
T Consensus 934 ~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~ 1013 (1185)
T KOG0388|consen 934 YGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNT 1013 (1185)
T ss_pred cCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCccccc
Confidence 00000 00000000 000
Q ss_pred --------ccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHH
Q 000379 391 --------DLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKV 462 (1604)
Q Consensus 391 --------~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~ 462 (1604)
..-..|.|+..|-++|.... ..+.|+++|.+-..+...+.++|.. .++....+.|. ....+
T Consensus 1014 ~i~~Ppm~~FitdSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~y----r~Y~ylRLDGS------sk~~d 1082 (1185)
T KOG0388|consen 1014 TIYVPPMNTFITDSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVY----RGYTYLRLDGS------SKASD 1082 (1185)
T ss_pred ceecCcHHhhhccccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHh----hccceEEecCc------chhhH
Confidence 01123678888888887766 4568999999988888999998875 67888889998 57889
Q ss_pred HHHHHHHHhCCCc-eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 463 QKEVLESFRGGKV-NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 463 r~~vl~~Fr~g~~-~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
|.+++.+|...++ -+|++|.+++-|||+.+++.||.||..||+..-.|...||.|-|+. ++-++.+|+.++
T Consensus 1083 Rrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1083 RRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred HHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999999998764 4678999999999999999999999999999999999999999985 667777887764
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=190.10 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=129.4
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---CCc
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFE 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~ 120 (1604)
.|+++|.++++.+. ++|+++++|||+|||+++++++.+.+.... ...+++++|++|+++|+.|+.+.++.+. ++.
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~ 99 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTRELALQIAEVARKLGKHTNLK 99 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCce
Confidence 58999999999987 599999999999999998887766554211 1345679999999999999999988764 678
Q ss_pred EEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
+..++|+.....+ .... .+++|+|+||+.|.+.+.++...+.+++++|+||||++.+ ..+...+..+......
T Consensus 100 ~~~~~~~~~~~~~-----~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~-~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 100 VVVIYGGTSIDKQ-----IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD-MGFEDQIREILKLLPK 173 (203)
T ss_pred EEEEECCCCHHHH-----HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-cChHHHHHHHHHhCCc
Confidence 8888887654332 2222 4789999999999999998888899999999999999874 3566666666666666
Q ss_pred CCcEEEEeccCC
Q 000379 200 KPKVFGMTASPV 211 (1604)
Q Consensus 200 ~p~iLgLTATP~ 211 (1604)
.++++++||||.
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 799999999986
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG1817 consensus Ribonuclease [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-19 Score=196.02 Aligned_cols=123 Identities=33% Similarity=0.387 Sum_probs=108.0
Q ss_pred hHHHHHhhccCCCCC----CCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCcccc
Q 000379 1059 SSLILEALTTLGCCE----SFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYI 1134 (1604)
Q Consensus 1059 ~~lll~AlT~~s~~~----~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i 1134 (1604)
..++-+|+|..+... ..+||||||||||||.+++|.++|.+||+.|||.||.+|+.+|||..-+++|..+|+++|+
T Consensus 289 irlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~l 368 (533)
T KOG1817|consen 289 IRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYL 368 (533)
T ss_pred HHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhh
Confidence 678999999988752 2479999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCCh
Q 000379 1135 RDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL 1214 (1604)
Q Consensus 1135 ~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~ 1214 (1604)
.... +.+. .+.+..|.+||++||.|||.|+|+|+
T Consensus 369 i~n~-~~k~---------------------------------------------~~~lk~K~~ADlfEAfiGaLyvD~~l 402 (533)
T KOG1817|consen 369 ITNF-DLKD---------------------------------------------FQNLKLKDYADLFEAFIGALYVDKGL 402 (533)
T ss_pred hhCc-chhh---------------------------------------------hhhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 9762 1111 12367899999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 000379 1215 IAALYMMKWLGID 1227 (1604)
Q Consensus 1215 ~~a~~~~~~lg~~ 1227 (1604)
+.+.+|++.+-.+
T Consensus 403 e~~~qf~~~l~~P 415 (533)
T KOG1817|consen 403 EYCRQFLRVLFFP 415 (533)
T ss_pred HHHHHHHHHHhhH
Confidence 9999999887543
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=182.68 Aligned_cols=157 Identities=24% Similarity=0.362 Sum_probs=123.5
Q ss_pred cHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC---CcEE
Q 000379 47 RIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD---FEVE 122 (1604)
Q Consensus 47 r~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~---~~v~ 122 (1604)
+|+|.++++.+. ++++++.+|||+|||++++.++...+. .+...++++++|+++|++|+.+.++.++. +++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~----~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQ----EGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHH----TTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhc----cCCCceEEEEeecccccccccccccccccccccccc
Confidence 489999999887 588999999999999999998877664 22335799999999999999999998874 5888
Q ss_pred EEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc--CCC
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS--DNK 200 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~--~~~ 200 (1604)
.++|+...+... ..|. ..+++|+|+||+.|.+.+.++...+.++++|||||+|++... .+...+..+.... ...
T Consensus 77 ~~~~~~~~~~~~-~~~~--~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 77 LLHGGQSISEDQ-REVL--SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp EESTTSCHHHHH-HHHH--HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTT
T ss_pred cccccccccccc-cccc--cccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCC
Confidence 888876533111 1111 347999999999999999987668888999999999999876 4444555444433 235
Q ss_pred CcEEEEeccCC
Q 000379 201 PKVFGMTASPV 211 (1604)
Q Consensus 201 p~iLgLTATP~ 211 (1604)
+++++|||||.
T Consensus 153 ~~~i~~SAT~~ 163 (169)
T PF00270_consen 153 IQIILLSATLP 163 (169)
T ss_dssp SEEEEEESSST
T ss_pred CcEEEEeeCCC
Confidence 88999999986
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=204.39 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++-+.... ..+..+||||+++..++.|.++|.+ .+++...+||. +.++++..+.+.|+.|
T Consensus 427 ~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~----~gi~h~vLnak------~~q~Ea~iia~Ag~~G-- 493 (896)
T PRK13104 427 ADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKK----ENIKHQVLNAK------FHEKEAQIIAEAGRPG-- 493 (896)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEeecCC------CChHHHHHHHhCCCCC--
Confidence 468888877665543 3456799999999999999999998 58899999998 7899999999999999
Q ss_pred eEEEEccccccccCCCCc--------------------------------------cEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 476 NLLFATDVIEEGMHVPNC--------------------------------------SYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~--------------------------------------nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.|+|||+++++|+||.=- =+||--..+.|.+---|-+|||||
T Consensus 494 ~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 494 AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 599999999999998721 157777789999999999999999
Q ss_pred cCc
Q 000379 518 HNS 520 (1604)
Q Consensus 518 ~gs 520 (1604)
.|.
T Consensus 574 QGD 576 (896)
T PRK13104 574 QGD 576 (896)
T ss_pred CCC
Confidence 994
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=203.61 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+.+.+.... ..+..+||||+++..++.|.+.|.+ .++....++|. +..+++..+.++++.|.
T Consensus 423 ~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~----~gi~~~~Lna~------~~~~Ea~ii~~ag~~g~- 490 (796)
T PRK12906 423 DSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE----AGIPHAVLNAK------NHAKEAEIIMNAGQRGA- 490 (796)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH----CCCCeeEecCC------cHHHHHHHHHhcCCCce-
Confidence 468888888886553 3456899999999999999999998 47888999998 56777677777777775
Q ss_pred eEEEEccccccccCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
|+|||+++++|+||+ ++. +||+++.|.|.+.|.|++||+||.|.. ...++...
T Consensus 491 -VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 491 -VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred -EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 999999999999995 788 999999999999999999999999964 55555533
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-16 Score=195.84 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
...++..|++.+..+. ..+.++||||+++..++.|.+.|... ++.+.++||. ++..+|.++++.|+.|+
T Consensus 424 ~~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~------~~~~eR~~~l~~fr~G~ 492 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSE------IDTLERVEIIRDLRLGE 492 (655)
T ss_pred ccchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCC------CCHHHHHHHHHHHhcCC
Confidence 3456777777776654 44679999999999999999999873 6889999998 89999999999999999
Q ss_pred ceEEEEccccccccCCCCccEEEEcC-----CCCCHHHHHHHhhhhcccCc-eEEEEEeccCHHHHHHHHH
Q 000379 475 VNLLFATDVIEEGMHVPNCSYVIRFD-----LPKTVSSYIQSRGRARQHNS-QFILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip~~nlVI~fD-----~p~s~~syiQr~GRA~R~gs-~~i~~v~~~~~~~~~~l~~ 539 (1604)
+.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||... +++++++..+......+.+
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999999999999999998 79999999999999999864 4666666555444444444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-16 Score=189.79 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=133.4
Q ss_pred CCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc-
Q 000379 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT- 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~- 117 (1604)
-.+|.||...++|+. +-|.|+++++|.|||...|.++.++.=....+++ =||+|||..+ -.|.-+|++++
T Consensus 614 GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGP---HLIVVpTsvi-LnWEMElKRwcP 689 (1958)
T KOG0391|consen 614 GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGP---HLIVVPTSVI-LNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCC---ceEEeechhh-hhhhHHHhhhCC
Confidence 468999999999984 4789999999999999999988887643333444 4999999555 56999999999
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC--hHHHHHHHHHh
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH--PYTKIMKEFYH 195 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~im~~~~~ 195 (1604)
++++..|+|...-..-.++.|.+ -+..+|.|++|+.++..+. .+.-.+|.++|+||||++++.. .|..++. |
T Consensus 690 glKILTYyGs~kErkeKRqgW~k-PnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfksqrWQAlln-f-- 763 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAK-PNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFKSQRWQALLN-F-- 763 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccC-CCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchhHHHHHHHhc-c--
Confidence 79999999986544444555653 3467999999998876654 3455689999999999997642 2222221 1
Q ss_pred hcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCcee-eccchhhhhhccCCc
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF-TIEDKTEMEVFVPSA 253 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~-t~~~~~~l~~~~~~p 253 (1604)
+.-|+|+||+||..|+ +.+|+++|+--.- +..+...+..+..+|
T Consensus 764 ---nsqrRLLLtgTPLqNs-----------lmELWSLmhFLmP~~f~shd~fk~wfsnP 808 (1958)
T KOG0391|consen 764 ---NSQRRLLLTGTPLQNS-----------LMELWSLMHFLMPQTFASHDIFKPWFSNP 808 (1958)
T ss_pred ---chhheeeecCCchhhH-----------HHHHHHHHHHhhchhhhhhhhHHHHhcCc
Confidence 4468899999999764 5667766653111 113344455555554
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-18 Score=200.57 Aligned_cols=167 Identities=23% Similarity=0.252 Sum_probs=114.5
Q ss_pred CCCCCCCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 38 STNSINFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 38 ~~~~~~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
.+.....+|||||+++++.++. .+.=+.|..|+|||+.++-+...+.. .++|||||+.+|..|..++
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~--------~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA--------ARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh--------hheEeecchHHHHHHHHHH
Confidence 4445678899999999999973 45667788999999999887766532 5699999999999999888
Q ss_pred HHhhc--CCcEEEEECCCCCCcc---------------c----hhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccce
Q 000379 113 IRVHT--DFEVEEYYGAKGVDEW---------------D----SQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIV 169 (1604)
Q Consensus 113 i~~~~--~~~v~~~~G~~~~~~~---------------~----~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i 169 (1604)
..... +++...+|.+..+..- + .+.|...- .+--||++|||.+...-..-..-+..+
T Consensus 226 w~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~f 305 (1518)
T COG4889 226 WTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEF 305 (1518)
T ss_pred HhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCc
Confidence 87654 5666666665432210 0 01222222 345699999999976654444556889
Q ss_pred eEEEEeCcccccCCChHHHHHHHHHhhcC----CCCcEEEEeccCCC
Q 000379 170 CFIVIDECHHATGNHPYTKIMKEFYHKSD----NKPKVFGMTASPVV 212 (1604)
Q Consensus 170 ~llI~DEaH~~~~~~~~~~im~~~~~~~~----~~p~iLgLTATP~~ 212 (1604)
+|||.||||+..+-+--..--..|-..+. +..++|-|||||-.
T Consensus 306 DliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 306 DLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred cEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchh
Confidence 99999999999865322221122221111 23678899999964
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=183.96 Aligned_cols=310 Identities=19% Similarity=0.238 Sum_probs=194.3
Q ss_pred CCeEEEEEecChhhHHHHHHHHHh---hcC---CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcC
Q 000379 92 FKKLIIFLAPTVHLVHQQYDVIRV---HTD---FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165 (1604)
Q Consensus 92 ~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~---~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~ 165 (1604)
..+.++|+-|+++|++|.++.|++ +++ ++...+.|+..... ......++.+|+|+||+++.+.+..|.+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~----Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRT----QCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHH----HHHHhhcCceeeecCchhhhhhhhcccee
Confidence 345689999999999999985554 442 44446667654332 33445568999999999999999999999
Q ss_pred ccceeEEEEeCcccccCCChHHHHHHHHHhhc------CCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceee
Q 000379 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFT 239 (1604)
Q Consensus 166 l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~------~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t 239 (1604)
+.+..++|+||++-+.+. .|...+..|..+. ..+++....|||...-. -..-=|.+|+-....
T Consensus 361 lt~crFlvlDead~lL~q-gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~fe----------Vkk~~ervmhfptwV 429 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQ-GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFE----------VKKVGERVMHFPTWV 429 (725)
T ss_pred eeeeEEEEecchhhhhhc-ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEE----------eeehhhhhccCceeE
Confidence 999999999999999875 5666666555432 24577888888864211 001111222211100
Q ss_pred ccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000379 240 IEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILY 319 (1604)
Q Consensus 240 ~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (1604)
... .... +.+.+...-...
T Consensus 430 -----------------dLk--geD~----vpetvHhvv~lv-------------------------------------- 448 (725)
T KOG0349|consen 430 -----------------DLK--GEDL----VPETVHHVVKLV-------------------------------------- 448 (725)
T ss_pred -----------------ecc--cccc----cchhhccceeec--------------------------------------
Confidence 000 0000 000000000000
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHH
Q 000379 320 CLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKL 399 (1604)
Q Consensus 320 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~ 399 (1604)
+-..-|.||..+ ++++ ... ... ...... ...+....+..+
T Consensus 449 ~p~~d~sw~~lr---------------------------~~i~-----td~-vh~-kdn~~p------g~~Spe~~s~a~ 488 (725)
T KOG0349|consen 449 CPSVDGSWCDLR---------------------------QFIE-----TDK-VHT-KDNLLP------GQVSPENPSSAT 488 (725)
T ss_pred CCccCccHHHHh---------------------------hhhc-----cCC-ccc-cccccc------ccCCCCChhhhh
Confidence 000012222110 0000 000 000 000000 000111112222
Q ss_pred HHH-----HHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 400 HEL-----LQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 400 ~~L-----~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
..| +..++.+ .-.++||||.++..++.|.+++.+..+ .++.|.++||+ ..+.+|++.++.|+.++
T Consensus 489 kilkgEy~v~ai~~h---~mdkaiifcrtk~dcDnLer~~~qkgg-~~~scvclhgD------rkP~Erk~nle~Fkk~d 558 (725)
T KOG0349|consen 489 KILKGEYGVVAIRRH---AMDKAIIFCRTKQDCDNLERMMNQKGG-KHYSCVCLHGD------RKPDERKANLESFKKFD 558 (725)
T ss_pred HHhcCchhhhhhhhh---ccCceEEEEeccccchHHHHHHHHcCC-ccceeEEEecC------CChhHHHHHHHhhhhcC
Confidence 221 1122222 335899999999999999999987532 56899999999 67899999999999999
Q ss_pred ceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEe
Q 000379 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLE 527 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~ 527 (1604)
.++||||+|+++||||...-.+|+..+|.....|+||+||+||+..- .|.++.
T Consensus 559 vkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 559 VKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred eEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEee
Confidence 99999999999999999999999999999999999999999998754 555554
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=199.21 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+.+.+.... ..+..+||||+++..++.|.+.|.. .+++...+||. +.+|+..+.+|+.|..
T Consensus 413 ~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~----~gi~~~vLnak--------q~eREa~Iia~Ag~~g 479 (830)
T PRK12904 413 KEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKK----AGIPHNVLNAK--------NHEREAEIIAQAGRPG 479 (830)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCceEeccCc--------hHHHHHHHHHhcCCCc
Confidence 478888988886533 2345899999999999999999998 47888999986 6688999999999999
Q ss_pred eEEEEccccccccCCCCc--------------------------------------cEEEEcCCCCCHHHHHHHhhhhcc
Q 000379 476 NLLFATDVIEEGMHVPNC--------------------------------------SYVIRFDLPKTVSSYIQSRGRARQ 517 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~--------------------------------------nlVI~fD~p~s~~syiQr~GRA~R 517 (1604)
.|+|||+++++|+||+=- =+||--..+.|.+---|-+|||||
T Consensus 480 ~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR 559 (830)
T PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc
Confidence 999999999999999853 167777889999999999999999
Q ss_pred cCc
Q 000379 518 HNS 520 (1604)
Q Consensus 518 ~gs 520 (1604)
.|.
T Consensus 560 QGd 562 (830)
T PRK12904 560 QGD 562 (830)
T ss_pred CCC
Confidence 994
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=196.28 Aligned_cols=344 Identities=22% Similarity=0.288 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHH--Hhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---
Q 000379 44 FIPRIYQLKVFE--VAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~--~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--- 117 (1604)
.....||.+++. .++ ++|.|..+||+.|||++|-++++...- ..++.++++.|-++.+..-...+..+.
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l-----~~rr~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVL-----CRRRNVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHH-----HHhhceeEecceeehhHHHHhhhhhhcccc
Confidence 456788988875 333 499999999999999999887765432 134569999999998887777776653
Q ss_pred CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHH---HHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYT---KIMKE 192 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~---~im~~ 192 (1604)
|+.|..++|...... .++.-.|.|||.+.-..++.+- .-.++.+.+||+||-|.+.+.+... .++..
T Consensus 297 G~~ve~y~g~~~p~~--------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k 368 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEK--------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAK 368 (1008)
T ss_pred CCcchhhcccCCCCC--------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHH
Confidence 889999998765543 3346789999998765444331 1245678899999999998664322 22222
Q ss_pred H-HhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchh-hhhhccCCcceeeeeccCCCccccch
Q 000379 193 F-YHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKT-EMEVFVPSAKESCRFYDQSKFCGSDL 270 (1604)
Q Consensus 193 ~-~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~-~l~~~~~~p~e~~~~y~~~~~~~~~l 270 (1604)
+ |.......+|+|||||..+ +..|+.++++.+|+...|. .+.+++ +|-. ..|+.
T Consensus 369 ~~y~~~~~~~~iIGMSATi~N-------------~~lL~~~L~A~~y~t~fRPv~L~E~i-k~G~--~i~~~-------- 424 (1008)
T KOG0950|consen 369 ILYENLETSVQIIGMSATIPN-------------NSLLQDWLDAFVYTTRFRPVPLKEYI-KPGS--LIYES-------- 424 (1008)
T ss_pred HHHhccccceeEeeeecccCC-------------hHHHHHHhhhhheecccCcccchhcc-CCCc--ccccc--------
Confidence 2 2233344789999999653 4788999998877765432 222222 1000 00000
Q ss_pred hhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q 000379 271 KGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIY 350 (1604)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1604)
. +.. .+.
T Consensus 425 -----------------------------~------r~~----------~lr---------------------------- 431 (1008)
T KOG0950|consen 425 -----------------------------S------RNK----------VLR---------------------------- 431 (1008)
T ss_pred -----------------------------h------hhH----------HHH----------------------------
Confidence 0 000 000
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHH
Q 000379 351 RQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVV 430 (1604)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L 430 (1604)
++........... .-+.-+....+.+ ..+.++||||..|..++.+
T Consensus 432 ------------~ia~l~~~~~g~~------------------dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~ 476 (1008)
T KOG0950|consen 432 ------------EIANLYSSNLGDE------------------DPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENV 476 (1008)
T ss_pred ------------HhhhhhhhhcccC------------------CCcceeeehhhhh-----hcCCeEEEEcCcccchHHH
Confidence 0000000000000 0000111111122 2234799999998877665
Q ss_pred HHHHhh-C-------------------------CC-CC-CeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc
Q 000379 431 ERFVKK-V-------------------------PF-LT-HLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD 482 (1604)
Q Consensus 431 ~~~L~~-~-------------------------~~-~~-~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~ 482 (1604)
+..+.. + |. +. .+.-..-.|...++.+++..+|+.+...||+|.+.|++||+
T Consensus 477 a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTS 556 (1008)
T KOG0950|consen 477 ASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATS 556 (1008)
T ss_pred HHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecc
Confidence 543321 1 10 00 01111112333344568999999999999999999999999
Q ss_pred ccccccCCCCccEEEEcCC----CCCHHHHHHHhhhhcccC----ceEEEEEeccCHH
Q 000379 483 VIEEGMHVPNCSYVIRFDL----PKTVSSYIQSRGRARQHN----SQFILMLERGNLK 532 (1604)
Q Consensus 483 vleeGIDip~~nlVI~fD~----p~s~~syiQr~GRA~R~g----s~~i~~v~~~~~~ 532 (1604)
.+.-|+|.|+-.++|++-. +.+...|.|++|||||.| ...++....++.+
T Consensus 557 TlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~ 614 (1008)
T KOG0950|consen 557 TLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK 614 (1008)
T ss_pred hhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh
Confidence 9999999999999998643 447889999999999998 2477777766554
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-16 Score=183.48 Aligned_cols=448 Identities=17% Similarity=0.171 Sum_probs=239.4
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh------ccCEEEEeCCCChHHHHHHHHHHHHHHHHh---hCC-CCeEEEEEecChhh
Q 000379 36 SSSTNSINFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIK---SNG-FKKLIIFLAPTVHL 105 (1604)
Q Consensus 36 ~~~~~~~~~~pr~yQ~e~l~~~l------~~n~Iv~~~TGsGKTliailli~~~~~~~~---~~~-~~~~vl~LvPt~~L 105 (1604)
...+....+.+-++|..++.++. ....|+.+++|.|||++.+.+|.+.-...+ ..+ ....+|||||- .|
T Consensus 316 te~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sl 394 (901)
T KOG4439|consen 316 TETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SL 394 (901)
T ss_pred cCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HH
Confidence 33445567788999999999986 267899999999999988887766432211 111 11248999997 89
Q ss_pred HHHHHHHHHhhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHH----HHHhc----CcCccceeEEEE
Q 000379 106 VHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD----ALRKA----FLSLDIVCFIVI 174 (1604)
Q Consensus 106 v~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~----~l~~~----~~~l~~i~llI~ 174 (1604)
+.||..++.+.. -++|..+||....+ .-.+.+..+||||+||....+ -+..+ .+.--.|+-||+
T Consensus 395 i~qW~~Ev~~rl~~n~LsV~~~HG~n~r~-----i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 395 IHQWEAEVARRLEQNALSVYLYHGPNKRE-----ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHhhcceEEEEecCCcccc-----CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 999999999876 47888899876322 224566789999999998866 22111 111224678999
Q ss_pred eCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcc
Q 000379 175 DECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAK 254 (1604)
Q Consensus 175 DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 254 (1604)
||||.+.+........- . .-....+.+|||||+.++ ...+..|-..|...-|. +...-.+.+..+.
T Consensus 470 DEAH~IrN~~tq~S~AV--C--~L~a~~RWclTGTPiqNn--------~~DvysLlrFLr~~pF~--D~~~Wke~i~~~s 535 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAV--C--KLSAKSRWCLTGTPIQNN--------LWDVYSLLRFLRCPPFG--DLKQWKENIDNMS 535 (901)
T ss_pred hhhhhhcccchhHHHHH--H--HHhhcceeecccCccccc--------hhHHHHHHHHhcCCCcc--hHHHHHHhccCcc
Confidence 99999976533221110 0 012346799999999987 23455555555432221 1110000000000
Q ss_pred eeeeeccCCCccccchhhhhhhhhhhhchhHHHHH-HhHhh--hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000379 255 ESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQ-GSQLN--CYKDMDDK-HKTLRKQLSDYHAKILYCLDELGLICAY 330 (1604)
Q Consensus 255 e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~lG~~~~~ 330 (1604)
. .-...+. ... ...+.+.. .++.. ....++.+ +.-..-.+...-..+..++... +.
T Consensus 536 ~-------------~g~~rln-ll~--K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~a----sk 595 (901)
T KOG4439|consen 536 K-------------GGANRLN-LLT--KSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEA----SK 595 (901)
T ss_pred c-------------cchhhhh-hhh--hhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHH----HH
Confidence 0 0000000 000 00000000 00000 00001100 0000000111111111111110 01
Q ss_pred HHHHHHHHHhhhhHHHHHH---------------H----H-H----hhHHHHHHHHHHHHHHhhhcCcc-----------
Q 000379 331 EAVKICLEKVLKAQEECEI---------------Y----R-Q----SSLQCKYFLEEVLHVIGSALPLA----------- 375 (1604)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~---------------~----~-~----~~~~~~~~~~~~~~~l~~~~~~~----------- 375 (1604)
..++..+............ | . . ........+-..+-.+.+.+...
T Consensus 596 k~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~ 675 (901)
T KOG4439|consen 596 KLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEE 675 (901)
T ss_pred HHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHH
Confidence 1122211111100000000 0 0 0 00000000000111111110000
Q ss_pred ----------------------chh-hccccCC---------cccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEch
Q 000379 376 ----------------------DKI-FLDFGFD---------YSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVER 423 (1604)
Q Consensus 376 ----------------------~~~-~~~~~~~---------~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~ 423 (1604)
... ......+ ..........|-|+...+++++........+++|..+-
T Consensus 676 ~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQw 755 (901)
T KOG4439|consen 676 FQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQW 755 (901)
T ss_pred hhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHH
Confidence 000 0000000 01122334567888888888876644555677777666
Q ss_pred HHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhC--CCce-EEEEccccccccCCCCccEEEEcC
Q 000379 424 IIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG--GKVN-LLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 424 r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~--g~~~-iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
......+...|++ .++....++|. ...++|+++++.|.. |..+ .|++-...+.|||+-..|++|..|
T Consensus 756 tsvLniv~~hi~~----~g~~y~si~Gq------v~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 756 TSVLNIVRKHIQK----GGHIYTSITGQ------VLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred HHHHHHHHHHHhh----CCeeeeeecCc------cchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 5555666666766 36778889998 789999999999964 3344 467888999999999999999999
Q ss_pred CCCCHHHHHHHhhhhcccCce----EEEEEeccCHHH
Q 000379 501 LPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 501 ~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~ 533 (1604)
+-||+.---|...|.-|.|++ .+-|+..|+.++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 999999999999999999987 233445666653
|
|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=167.69 Aligned_cols=121 Identities=45% Similarity=0.683 Sum_probs=103.1
Q ss_pred CCcceeccCCCcCcccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEee
Q 000379 891 GKDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970 (1604)
Q Consensus 891 ~~~~~~~~~~~~~~~~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~ 970 (1604)
..+.++++|+++..+.++|++|+++|++++|.|.+|. |++|.|+|+......+.||.+||+++||+.|.+++||||+++
T Consensus 15 ~~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~ 93 (135)
T cd02844 15 ASDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGK 93 (135)
T ss_pred ccceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEe
Confidence 3567899999999999999999999999999999999 999999998542125689999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeCcccceeeccc
Q 000379 971 QSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018 (1604)
Q Consensus 971 ~~~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip 1018 (1604)
++++++|+|+++....+. .....+.+..++||||||.++++|
T Consensus 94 ~~~~~~NlL~~~~~~~~~------~~~~~~~~~~v~L~PELC~~~~~p 135 (135)
T cd02844 94 QIFNLHNLLHNRFEEKGE------SEEKEKDRYFVELPPELCSVIDLP 135 (135)
T ss_pred cccccceecccccccccc------cccccccceEEEeChHHhccccCC
Confidence 999999999997643321 012345567789999999999987
|
CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=190.19 Aligned_cols=177 Identities=18% Similarity=0.249 Sum_probs=128.0
Q ss_pred CCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC--
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF-- 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~-- 119 (1604)
.|.|-.||.+++...- ++..+|++||.+|||++....|...++ .....+|++++||++|++|....+...++.
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLR----esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLR----ESDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHh----hcCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 4899999999999885 477999999999999999999888776 345678999999999999998888765532
Q ss_pred --cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh---cCcCccceeEEEEeCcccccCC---ChHHHHHH
Q 000379 120 --EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK---AFLSLDIVCFIVIDECHHATGN---HPYTKIMK 191 (1604)
Q Consensus 120 --~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~---~~~~l~~i~llI~DEaH~~~~~---~~~~~im~ 191 (1604)
+-..+.|....+. +...| +++|+|+-|+.+-..|.. ..-...++..+||||+|.+... +.+-+++.
T Consensus 585 ~~rg~sl~g~ltqEY-sinp~-----nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEY-SINPW-----NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred cccchhhHhhhhHHh-cCCch-----hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 2233344433221 11122 689999999999887765 3445688999999999998744 33333332
Q ss_pred HHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc
Q 000379 192 EFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~ 241 (1604)
. ....+|+||||..+ +..+...+...++.++-.++...
T Consensus 659 l------i~CP~L~LSATigN------~~l~qkWlnq~~R~~sr~~eli~ 696 (1330)
T KOG0949|consen 659 L------IPCPFLVLSATIGN------PNLFQKWLNQRGRAMSRNAELID 696 (1330)
T ss_pred h------cCCCeeEEecccCC------HHHHHHHHHHHHhhcCCCeeeee
Confidence 1 35679999999653 33456666667776665555443
|
|
| >PRK00102 rnc ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=185.04 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=62.9
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA 1586 (1604)
..|||+.|+||||++++..|+|+++++ +||.|. +.|+|.|.++ +...+.|.| +|||.||+.||
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~skk~Ae~~AA 219 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKE---------EGPAHD---KEFTVEVTVN----GKELGEGTG-SSKKEAEQAAA 219 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeec---------cCCCCC---ceEEEEEEEC----CEEEEEeee-CCHHHHHHHHH
Confidence 468999999999999999999999887 899998 8999888883 456677777 67999999999
Q ss_pred HHHHHHHHH
Q 000379 1587 LIMLHELER 1595 (1604)
Q Consensus 1587 ~~~l~~l~~ 1595 (1604)
+.||+.|+.
T Consensus 220 ~~Al~~l~~ 228 (229)
T PRK00102 220 KQALKKLKE 228 (229)
T ss_pred HHHHHHHhh
Confidence 999999864
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=176.15 Aligned_cols=153 Identities=25% Similarity=0.384 Sum_probs=108.8
Q ss_pred CCCcHHHHHHHHHhh--------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 44 FIPRIYQLKVFEVAK--------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l--------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
++||+||.+++..+. .+++++.+|||+|||.+++.++.++.. +++|+||+..|++||.+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------ceeEecCHHHHHHHHHHHHHH
Confidence 579999999999887 377999999999999999988777642 699999999999999999976
Q ss_pred hcCCcEEEEECCC----------CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc-----------CcCccceeEEEE
Q 000379 116 HTDFEVEEYYGAK----------GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA-----------FLSLDIVCFIVI 174 (1604)
Q Consensus 116 ~~~~~v~~~~G~~----------~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~-----------~~~l~~i~llI~ 174 (1604)
+..-......... ....+....-.......+++++|++.|....... .......++|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 6543333221110 0001111112233467899999999998776532 123456789999
Q ss_pred eCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 175 DECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 175 DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
|||||+.+...|..++. ...+.+|+|||||.
T Consensus 153 DEaH~~~~~~~~~~i~~------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSSYREIIE------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHHHHHHHH------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHHHHHHHc------CCCCeEEEEEeCcc
Confidence 99999987644777776 46788999999996
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=202.31 Aligned_cols=318 Identities=19% Similarity=0.175 Sum_probs=190.4
Q ss_pred CCCCCcHHHHHHHHHhhc----c-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAKR----R-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~----~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
..-.++++|.++++.+.. . .+++.+|||+|||.+++.++.+..... .....+++++.|++++++++++.++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 192 IEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred cCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 344569999999998863 5 788999999999999999887776522 225677999999999999999999987
Q ss_pred cCCcEEE---EECCCCCCccchhHH-----------HHhcCCCcEEEEcHHHHHHHHHhcCcC-c--cceeEEEEeCccc
Q 000379 117 TDFEVEE---YYGAKGVDEWDSQCW-----------QKEINKNDVLVMTPQILLDALRKAFLS-L--DIVCFIVIDECHH 179 (1604)
Q Consensus 117 ~~~~v~~---~~G~~~~~~~~~~~w-----------~~~~~~~~ViV~T~q~Ll~~l~~~~~~-l--~~i~llI~DEaH~ 179 (1604)
++..... .+|...........+ ....--+-++++|-+++.......... + -..+++||||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 6533222 234332211111100 000111233444444443111111111 1 1247999999999
Q ss_pred ccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeeccchhhhhhccCCcceeeee
Q 000379 180 ATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259 (1604)
Q Consensus 180 ~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 259 (1604)
+.......-+............+++.||||+.. .....|...++......... .. .|.
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~-----------~~~~~l~~~~~~~~~~~~~~----~~--~~~----- 407 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPP-----------FLKEKLKKALGKGREVVENA----KF--CPK----- 407 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCH-----------HHHHHHHHHHhcccceeccc----cc--ccc-----
Confidence 966532233333333334456899999999752 11233333222110000000 00 000
Q ss_pred ccCCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000379 260 YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEK 339 (1604)
Q Consensus 260 y~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~ 339 (1604)
.. +.+.
T Consensus 408 --------------~~-----------------------------------------------e~~~------------- 413 (733)
T COG1203 408 --------------ED-----------------------------------------------EPGL------------- 413 (733)
T ss_pred --------------cc-----------------------------------------------cccc-------------
Confidence 00 0000
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHH-HHHhhCCCCCcEEE
Q 000379 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCI 418 (1604)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~-lL~~~~~~~~~~~I 418 (1604)
......+... .+. ..+.. +.... +.+.+++
T Consensus 414 -----------------~~~~~~~~~~-----------------------------~~~-~~~~~~~~~~~--~~~~kvl 444 (733)
T COG1203 414 -----------------KRKERVDVED-----------------------------GPQ-EELIELISEEV--KEGKKVL 444 (733)
T ss_pred -----------------ccccchhhhh-----------------------------hhh-Hhhhhcchhhh--ccCCcEE
Confidence 0000000000 000 01111 11222 3456899
Q ss_pred EEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHH----hCCCceEEEEccccccccCCCCcc
Q 000379 419 IFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESF----RGGKVNLLFATDVIEEGMHVPNCS 494 (1604)
Q Consensus 419 IFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~F----r~g~~~iLIaT~vleeGIDip~~n 494 (1604)
|-||++..|..+++.|+... ..+..+||. +..++|.+.++.+ ..+...|+|||+|.|.|+|+- ++
T Consensus 445 vI~NTV~~Aie~Y~~Lk~~~----~~v~LlHSR------f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd 513 (733)
T COG1203 445 VIVNTVDRAIELYEKLKEKG----PKVLLLHSR------FTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FD 513 (733)
T ss_pred EEEecHHHHHHHHHHHHhcC----CCEEEEecc------cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cC
Confidence 99999999999999999842 278899999 8888888877754 456789999999999999994 78
Q ss_pred EEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 495 YVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 495 lVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
++|. -+..+.+.|||.||+.|.|
T Consensus 514 ~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 514 VLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred eeee--cCCCHHHHHHHHHHHhhcc
Confidence 7776 7788999999999999998
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=193.19 Aligned_cols=314 Identities=20% Similarity=0.246 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEE
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+--..+..+++..+.+ +-+||+++||||||..--..+.+... +.++.+.++-|.+--+...++.+...++.+++
T Consensus 49 LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 49 LPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3345666677777765 55789999999999876666555432 45567999999998888899999988887776
Q ss_pred EEECCCCCCccchhHHHH-hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChH-HHHHHHHHhhcCCC
Q 000379 123 EYYGAKGVDEWDSQCWQK-EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY-TKIMKEFYHKSDNK 200 (1604)
Q Consensus 123 ~~~G~~~~~~~~~~~w~~-~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~-~~im~~~~~~~~~~ 200 (1604)
..+|=.- +|+. .-....|-+||.++|+..+..... ++.+++|||||+|+-.-+..+ -..++.........
T Consensus 124 ~~VGY~i-------Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 124 ETVGYSI-------RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred ceeeEEE-------EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 6665210 1111 123679999999999999987764 889999999999997643222 12222222223334
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
-++|.||||.. -..+.+.++ +.++.+..|.- | +.+.|.+.....
T Consensus 196 LKiIimSATld--------------~~rfs~~f~~apvi~i~GR~f-------P--Vei~Y~~~~~~d------------ 240 (845)
T COG1643 196 LKLIIMSATLD--------------AERFSAYFGNAPVIEIEGRTY-------P--VEIRYLPEAEAD------------ 240 (845)
T ss_pred ceEEEEecccC--------------HHHHHHHcCCCCEEEecCCcc-------c--eEEEecCCCCcc------------
Confidence 69999999964 245666666 56665544321 1 222332111000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
+ .
T Consensus 241 ----------------~-----~--------------------------------------------------------- 242 (845)
T COG1643 241 ----------------Y-----I--------------------------------------------------------- 242 (845)
T ss_pred ----------------h-----h---------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCC
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPF 439 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~ 439 (1604)
-...+...+........+.++||..-....+...+.|.+ ..
T Consensus 243 --------------------------------------l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~-~~ 283 (845)
T COG1643 243 --------------------------------------LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK-AE 283 (845)
T ss_pred --------------------------------------HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh-cc
Confidence 000011111111112345789999999888888888876 22
Q ss_pred C-CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCC---------
Q 000379 440 L-THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL--------- 501 (1604)
Q Consensus 440 ~-~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~--------- 501 (1604)
+ ..+.+..++|. |+.++|..+++--..|.-+|++||+++|.+|-||++.+||. ||.
T Consensus 284 l~~~~~i~PLy~~------L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 284 LGDDLEILPLYGA------LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred ccCCcEEeecccc------CCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 3 46788889999 99999999998887887779999999999999999999994 553
Q ss_pred -CCCHHHHHHHhhhhcccCc-eEEEEEec
Q 000379 502 -PKTVSSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 502 -p~s~~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
|-|-.+..||.|||||-+. .+|-++.+
T Consensus 358 ~~ISqAsA~QRaGRAGR~~pGicyRLyse 386 (845)
T COG1643 358 EPISKASADQRAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred EEechhhhhhhccccccCCCceEEEecCH
Confidence 3477889999999999885 47777653
|
|
| >TIGR02191 RNaseIII ribonuclease III, bacterial | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-17 Score=181.78 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=61.1
Q ss_pred cCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHH
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA 1586 (1604)
..|||+.|+||||++++..|.|+++.+ .|++|. +.|+|+|.++ +...+.|.| +|||.||+.||
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~---------~g~~~~---~~f~~~v~~~----~~~~~~g~g-~skk~A~~~AA 213 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKE---------EGPDHD---KEFTVEVSVN----GEPYGEGKG-KSKKEAEQNAA 213 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecc---------cCCCCC---ceEEEEEEEC----CEEEEEeee-CCHHHHHHHHH
Confidence 478999999999999999999999877 799998 8999888873 456677777 67999999999
Q ss_pred HHHHHHH
Q 000379 1587 LIMLHEL 1593 (1604)
Q Consensus 1587 ~~~l~~l 1593 (1604)
+.||+.|
T Consensus 214 ~~Al~~l 220 (220)
T TIGR02191 214 KAALEKL 220 (220)
T ss_pred HHHHHhC
Confidence 9999864
|
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=185.50 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=122.6
Q ss_pred CCCCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 43 NFIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
...+.+-|..+++.+.+ ...++.+.||||||-+++-+|...+. .++.+|||||-.+|-.|..+.|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------~GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------QGKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------cCCEEEEEeccccchHHHHHHHHHHh
Confidence 45678899999998864 45799999999999999999999887 55779999999999999999999999
Q ss_pred CCcEEEEECCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC---Ch-H-HHHHH
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN---HP-Y-TKIMK 191 (1604)
Q Consensus 118 ~~~v~~~~G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~---~~-~-~~im~ 191 (1604)
+.++.+++++.+... ..+.|.+.. +..+|+|+|-..+ |..+.++.|||+||=|...=. .| | ++.+.
T Consensus 270 g~~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 270 GAKVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred CCChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 999999999887654 566798887 6799999997766 778899999999999987511 11 1 22222
Q ss_pred HHHhhcCCCCcEEEEeccCC
Q 000379 192 EFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 192 ~~~~~~~~~p~iLgLTATP~ 211 (1604)
.+ ........+++=||||.
T Consensus 342 ~~-Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 342 VL-RAKKENAPVVLGSATPS 360 (730)
T ss_pred HH-HHHHhCCCEEEecCCCC
Confidence 22 22234456777799985
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-14 Score=181.52 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..++..|++.|..+. ..+.++||||+++..++.|.+.|.. .++.+.++||. ++..+|..+++.|+.|++
T Consensus 429 ~~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~----~gi~~~~~h~~------~~~~~R~~~l~~f~~g~i 497 (652)
T PRK05298 429 KGQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKE----LGIKVRYLHSD------IDTLERVEIIRDLRLGEF 497 (652)
T ss_pred cccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhh----cceeEEEEECC------CCHHHHHHHHHHHHcCCc
Confidence 345667777776654 3467999999999999999999987 47889999998 899999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcCC-----CCCHHHHHHHhhhhcccCc-eEEEEEecc
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDL-----PKTVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD~-----p~s~~syiQr~GRA~R~gs-~~i~~v~~~ 529 (1604)
+|||||+++++|+|+|++++||++|. |.+..+|+||+||+||... +++++++..
T Consensus 498 ~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~ 557 (652)
T PRK05298 498 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKI 557 (652)
T ss_pred eEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999885 7899999999999999753 466666643
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-14 Score=195.99 Aligned_cols=446 Identities=16% Similarity=0.161 Sum_probs=242.3
Q ss_pred CCCCCCcHHHHHHHHHhh------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 41 SINFIPRIYQLKVFEVAK------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
....++|+||.+.+.++. ..+.|+++++|.|||+.++..+.+..... ....+.++++||+ +++.+|.+++.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~--~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI--KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc--cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 344678999999998865 37899999999999999999887644311 1113458999998 88899999998
Q ss_pred hhc-CCc-EEEEECCCCCCccchhHHHHhcCC-----CcEEEEcHHHHHHH-HHhcCcCccceeEEEEeCcccccCCCh-
Q 000379 115 VHT-DFE-VEEYYGAKGVDEWDSQCWQKEINK-----NDVLVMTPQILLDA-LRKAFLSLDIVCFIVIDECHHATGNHP- 185 (1604)
Q Consensus 115 ~~~-~~~-v~~~~G~~~~~~~~~~~w~~~~~~-----~~ViV~T~q~Ll~~-l~~~~~~l~~i~llI~DEaH~~~~~~~- 185 (1604)
++. .++ +..++|.........+.....+.. .+|+++|++.+... ..++.+.-..++.+|+||+|.+.+...
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 887 456 777888664201111222222322 79999999999773 234455667789999999999765422
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCceeecc----chhhhhhccCCcceeeeecc
Q 000379 186 YTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE----DKTEMEVFVPSAKESCRFYD 261 (1604)
Q Consensus 186 ~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~----~~~~l~~~~~~p~e~~~~y~ 261 (1604)
-...+..+ .....+.||+||+. +.+.+|.++++. +..+. ....+......|........
T Consensus 491 ~~~~l~~~-----~~~~~~~LtgTPle-----------n~l~eL~sl~~~-f~~p~~~~~~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 491 EGKALQFL-----KALNRLDLTGTPLE-----------NRLGELWSLLQE-FLNPGLLGTSFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred HHHHHHHH-----hhcceeeCCCChHh-----------hhHHHHHHHHHH-HhCCccccchHHHHHHHHhhhhhhccccc
Confidence 12222222 34456999999964 346677776663 11221 12233333333322221111
Q ss_pred CCCccccchhhhhhhhhhhhchhHHHHHHhHhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 000379 262 QSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLR-KQLSDYHAKILYCLDELGLICAYEAVKICLEKV 340 (1604)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~ 340 (1604)
+ .... ...+......+.+++.+...........++.+.+... ..+......+........ ......+
T Consensus 554 ~---~~~~-~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~--------~~~~~~~ 621 (866)
T COG0553 554 P---LEAR-ELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGA--------EKNQQLL 621 (866)
T ss_pred c---hhhH-HHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHH--------HHHHHHH
Confidence 1 0000 0000000000111100000000001111111111110 000000000000000000 0000000
Q ss_pred hhhHHHHHHH-HHhhHHHHHHHHHHHHHHhhhcCccchhhccc---cCC------------cccccccCCCC-HHHHHHH
Q 000379 341 LKAQEECEIY-RQSSLQCKYFLEEVLHVIGSALPLADKIFLDF---GFD------------YSKAVDLGYIS-TKLHELL 403 (1604)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~s-~K~~~L~ 403 (1604)
.......... .... .... +......+...+..... +... ..+ ..........+ .|...+.
T Consensus 622 ~~~~~~~~~~~~~~~-~~~~-~l~~~~~lr~~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~ 698 (866)
T COG0553 622 EDLEKADSDENRIGD-SELN-ILALLTRLRQICNHPAL-VDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALD 698 (866)
T ss_pred HHHHhhccccccccc-hhhH-HHHHHHHHHHhccCccc-cccccccccchhhhhhhcccccccccchhhhccchHHHHHH
Confidence 0000000000 0000 0000 00000111111100000 0000 000 00000011224 7888888
Q ss_pred HHH-HhhCCCCCc--EEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC--CceEE
Q 000379 404 QLF-LSFGKSTQV--LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG--KVNLL 478 (1604)
Q Consensus 404 ~lL-~~~~~~~~~--~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g--~~~iL 478 (1604)
++| ..... ... +++||++...+...+...+... ++....++|. ++.+.|...+++|.++ ..-++
T Consensus 699 ~ll~~~~~~-~~~~~kvlifsq~t~~l~il~~~l~~~----~~~~~~ldG~------~~~~~r~~~i~~f~~~~~~~v~l 767 (866)
T COG0553 699 ELLLDKLLE-EGHYHKVLIFSQFTPVLDLLEDYLKAL----GIKYVRLDGS------TPAKRRQELIDRFNADEEEKVFL 767 (866)
T ss_pred HHHHHHHHh-hcccccEEEEeCcHHHHHHHHHHHHhc----CCcEEEEeCC------CChhhHHHHHHHhhcCCCCceEE
Confidence 888 44432 334 8999999999999999999884 4678889998 6789999999999996 34566
Q ss_pred EEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEeccCHH
Q 000379 479 FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLK 532 (1604)
Q Consensus 479 IaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~ 532 (1604)
++|.+++.|+|+..++.||.||+.||+....|...||.|.|++ ++-|+..+..+
T Consensus 768 ls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 768 LSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 7889999999999999999999999999999999999999986 55566666654
|
|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-16 Score=152.47 Aligned_cols=80 Identities=28% Similarity=0.460 Sum_probs=74.7
Q ss_pred CcCcccccCcEEEeccCC----ceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCcc
Q 000379 901 SVDAKNLKDMVVLAIHTG----RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPH 976 (1604)
Q Consensus 901 ~~~~~~l~~~vV~~~~~~----~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~ 976 (1604)
.++++.+.|++|+++|+| ++|+|.+|++||+|.|+|+.. ++.||.+||++|||+.|.+.+||||+|+.++.++
T Consensus 35 ~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~---~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s~~l 111 (122)
T cd02843 35 KFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP---EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRL 111 (122)
T ss_pred CCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC---CCccHHHHHHHhcCeEeccCCCCcEeecCccccc
Confidence 467889999999999998 799999999999999999854 4899999999999999999999999999999999
Q ss_pred ccccccC
Q 000379 977 NLLVNFN 983 (1604)
Q Consensus 977 n~l~~~~ 983 (1604)
|||+|+.
T Consensus 112 Nll~pr~ 118 (122)
T cd02843 112 NLLTPRY 118 (122)
T ss_pred cccCccc
Confidence 9999864
|
Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=164.48 Aligned_cols=105 Identities=20% Similarity=0.366 Sum_probs=94.9
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCC
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPN 492 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~ 492 (1604)
.+.|++|-+=++.+|+.|.++|.. .++++.++|+. ...-+|.+++.+.|.|++.|||.-+.+-||||+|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHSd------idTlER~eIirdLR~G~~DvLVGINLLREGLDiPE 514 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHSD------IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 514 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHh----cCceEEeeecc------chHHHHHHHHHHHhcCCccEEEeehhhhccCCCcc
Confidence 346999999999999999999998 48999999998 78999999999999999999999999999999999
Q ss_pred ccEEEEcCC-----CCCHHHHHHHhhhhcccCceEEEEEe
Q 000379 493 CSYVIRFDL-----PKTVSSYIQSRGRARQHNSQFILMLE 527 (1604)
Q Consensus 493 ~nlVI~fD~-----p~s~~syiQr~GRA~R~gs~~i~~v~ 527 (1604)
|.+|..+|. ..|-+++||-+|||.|.-..-++|+.
T Consensus 515 VsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred eeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEc
Confidence 999999984 56999999999999997655445543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=185.94 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|..++++-+.... ..+..+||||+++..++.|.++|.. .++....+++. +..+++..+.+.|+.|.
T Consensus 432 ~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~----~gi~~~vLnak------~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 432 DEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVK----EKIPHEVLNAK------FHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHH----CCCCeEeccCc------ccHHHHHHHHhCCCCCc-
Confidence 578888777665544 3456899999999999999999998 47888999998 68999999999999998
Q ss_pred eEEEEccccccccCCCCc-------------------------------------cEEEEcCCCCCHHHHHHHhhhhccc
Q 000379 476 NLLFATDVIEEGMHVPNC-------------------------------------SYVIRFDLPKTVSSYIQSRGRARQH 518 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~-------------------------------------nlVI~fD~p~s~~syiQr~GRA~R~ 518 (1604)
|+|||+++++|+||.=- =+||--..+.|.+---|-+|||||.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 99999999999999721 1688888999999999999999999
Q ss_pred Cc
Q 000379 519 NS 520 (1604)
Q Consensus 519 gs 520 (1604)
|.
T Consensus 579 GD 580 (908)
T PRK13107 579 GD 580 (908)
T ss_pred CC
Confidence 94
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=179.70 Aligned_cols=339 Identities=19% Similarity=0.195 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----CCc
Q 000379 46 PRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----DFE 120 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~----~~~ 120 (1604)
...++.+.++.+.+ +.++|.++||+|||...-..|.+... ..++..++++--|.+--+.-.++.+...- |-.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~---~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAI---ESGAACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHH---hcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 45567777777764 66789999999999988887776543 23366678999999887777777776543 322
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCC
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK 200 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~ 200 (1604)
|+--.+-.+ .......+++||.++|++.+.. .-.+..+..||+||+|.-.-++.+-.+...-+....+.
T Consensus 251 VGYqvrl~~----------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 251 VGYQVRLES----------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred eeEEEeeec----------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 222111111 1223578999999999999887 45678899999999999877666655544333333466
Q ss_pred CcEEEEeccCCCCCCCCCcccHHHHHHHHHhhc-CCceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhh
Q 000379 201 PKVFGMTASPVVRKGVSSAMDCEGQISELESTL-DSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWS 279 (1604)
Q Consensus 201 p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l-~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~ 279 (1604)
-++++||||... ..+...+ ++.+.++..+ .|....+
T Consensus 320 LkvILMSAT~da--------------e~fs~YF~~~pvi~i~gr---------------tfpV~~~-------------- 356 (924)
T KOG0920|consen 320 LKVILMSATLDA--------------ELFSDYFGGCPVITIPGR---------------TFPVKEY-------------- 356 (924)
T ss_pred ceEEEeeeecch--------------HHHHHHhCCCceEeecCC---------------CcchHHH--------------
Confidence 799999999531 1222222 2222222111 0000000
Q ss_pred hhchhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Q 000379 280 KFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKY 359 (1604)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1604)
T Consensus 357 -------------------------------------------------------------------------------- 356 (924)
T KOG0920|consen 357 -------------------------------------------------------------------------------- 356 (924)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCccchhhccccCCcc--cccccCCCCHHHHHHHHHHHhhCC-CCCcEEEEEEchHHHHHHHHHHHhh
Q 000379 360 FLEEVLHVIGSALPLADKIFLDFGFDYS--KAVDLGYISTKLHELLQLFLSFGK-STQVLCIIFVERIIAAKVVERFVKK 436 (1604)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~K~~~L~~lL~~~~~-~~~~~~IIFv~~r~ta~~L~~~L~~ 436 (1604)
|+++++..+.......... .....+.. ..+......-....+.+++..... ...+.+|||-........+.+.|..
T Consensus 357 fLEDil~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~ 435 (924)
T KOG0920|consen 357 FLEDILSKTGYVSEDDSAR-SGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEV 435 (924)
T ss_pred HHHHHHHHhcccccccccc-cccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhh
Confidence 0000000000000000000 00000000 000000000112222333332221 3356899999999999999998876
Q ss_pred CCCCCC---eeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEE--------EcCCCCCH
Q 000379 437 VPFLTH---LTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI--------RFDLPKTV 505 (1604)
Q Consensus 437 ~~~~~~---~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI--------~fD~p~s~ 505 (1604)
...+.+ +.+..+|+. |+..+|+.++++--.|..+|++||+++|..|-|++|-+|| +||+-.+.
T Consensus 436 ~~~f~~~~~~~ilplHs~------~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~ 509 (924)
T KOG0920|consen 436 NLPFADSLKFAILPLHSS------IPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKV 509 (924)
T ss_pred ccccccccceEEEecccc------CChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCc
Confidence 543333 667778888 9999999999999999999999999999999999999999 47765543
Q ss_pred ----------HHHHHHhhhhcccCc-eEEEEEec
Q 000379 506 ----------SSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 506 ----------~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
..-.||+|||||--. .++.++..
T Consensus 510 s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~ 543 (924)
T KOG0920|consen 510 SCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTR 543 (924)
T ss_pred chhheeeccccchHHhcccccCccCCeeEEeech
Confidence 344799999999765 46666653
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=162.42 Aligned_cols=161 Identities=25% Similarity=0.335 Sum_probs=125.9
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC-
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF- 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~- 119 (1604)
..+++++|.+++..+.. +++++.++||+|||.+++.++.+.+. ....+++++++|+..++.||.+.+...+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~----~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK----RGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhc----ccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 46799999999999986 79999999999999988888777664 222467999999999999999999987732
Q ss_pred --cEEEEECCCCCCccchhHHHHhcCCC-cEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh
Q 000379 120 --EVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 120 --~v~~~~G~~~~~~~~~~~w~~~~~~~-~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
....+.++... ...|....... +|+++|++.+.+.+........+++++|+||||++... .+...+..++..
T Consensus 82 ~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~ 156 (201)
T smart00487 82 GLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKL 156 (201)
T ss_pred CeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHh
Confidence 22333333221 23455555555 99999999999999887777888999999999999763 455666666665
Q ss_pred cCCCCcEEEEeccCCC
Q 000379 197 SDNKPKVFGMTASPVV 212 (1604)
Q Consensus 197 ~~~~p~iLgLTATP~~ 212 (1604)
....+++++|||||..
T Consensus 157 ~~~~~~~v~~saT~~~ 172 (201)
T smart00487 157 LPKNVQLLLLSATPPE 172 (201)
T ss_pred CCccceEEEEecCCch
Confidence 5677999999999963
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-13 Score=170.52 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hcCCcE
Q 000379 46 PRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTDFEV 121 (1604)
Q Consensus 46 pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 121 (1604)
.+|||.+++..+. ++++|+.++||+|||+++++++...+. .+ +.+++|+||+.|+.|.++.+.. ++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL----~g--~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV 166 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL----TG--KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTT 166 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh----hc--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 5999999998876 689999999999999999998875442 11 2389999999999999888876 468999
Q ss_pred EEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhcCcCcc-------ceeEEEEeCcccccC
Q 000379 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAFLSLD-------IVCFIVIDECHHATG 182 (1604)
Q Consensus 122 ~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~~~~l~-------~i~llI~DEaH~~~~ 182 (1604)
..++|+.+.... .... .++|+|+||+.| ++.++.+.+.++ .+.++|+|||+.+.-
T Consensus 167 ~~i~GG~~~~eq-----~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 167 GVLVSGSPLEKR-----KEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred EEEeCCCCHHHH-----HHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 999998765531 1122 589999999999 999998866665 458999999999853
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=172.47 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCC------------------CCeeEEEEEcCCCCC
Q 000379 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL------------------THLTVAYLTGSTTSV 455 (1604)
Q Consensus 394 ~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~------------------~~~~~~~l~G~~~~~ 455 (1604)
..|+|+..|++||.... .-+.+.|||.++..+.+.|..+|...+.- .|.....+.|.
T Consensus 1123 ~~SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs---- 1197 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS---- 1197 (1567)
T ss_pred hcCcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc----
Confidence 45889999999997654 45579999999999999999999765321 11223334444
Q ss_pred CCCCHHHHHHHHHHHhCCC---c-eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce----EEEEEe
Q 000379 456 DALTPKVQKEVLESFRGGK---V-NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLE 527 (1604)
Q Consensus 456 ~~m~~~~r~~vl~~Fr~g~---~-~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~----~i~~v~ 527 (1604)
.+..+|....+.|.+-. . -.||+|.+++-|||+-++|-||.||..||+.--+|++=|+.|.|+. .|-|+.
T Consensus 1198 --t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1198 --TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred --ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 56788899999998742 2 2689999999999999999999999999999999999999999986 344566
Q ss_pred ccCHHH
Q 000379 528 RGNLKQ 533 (1604)
Q Consensus 528 ~~~~~~ 533 (1604)
.|+.++
T Consensus 1276 qGTmEe 1281 (1567)
T KOG1015|consen 1276 QGTMEE 1281 (1567)
T ss_pred cccHHH
Confidence 776663
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=163.59 Aligned_cols=309 Identities=17% Similarity=0.215 Sum_probs=195.5
Q ss_pred cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
..|-.+++..+.+ +-+||+++||||||...--.+.+.. ....+++.+.-|.+.-+...++......+-+.+.-+
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG-----~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAG-----FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcc-----cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 4455556666654 5678999999999986555444332 123334888899988777777777665554443333
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc---CCCCc
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS---DNKPK 202 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~---~~~p~ 202 (1604)
|-. ....+.--....|.++|-++|++.+.... .++++++||+||||.-.- ...++-.++... ...-+
T Consensus 128 GY~------IRFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl---~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYT------IRFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSL---HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeE------EEecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhh---HHHHHHHHHHHHHhcCCCce
Confidence 311 00111112367899999999988776543 478899999999998642 233333333321 22358
Q ss_pred EEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC-ceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhh
Q 000379 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281 (1604)
Q Consensus 203 iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~ 281 (1604)
++.||||.. ...+.+.++. .++++..|.- | +.+.|.+.+.
T Consensus 198 lIimSATld--------------a~kfS~yF~~a~i~~i~GR~f-------P--Vei~y~~~p~---------------- 238 (674)
T KOG0922|consen 198 LIIMSATLD--------------AEKFSEYFNNAPILTIPGRTF-------P--VEILYLKEPT---------------- 238 (674)
T ss_pred EEEEeeeec--------------HHHHHHHhcCCceEeecCCCC-------c--eeEEeccCCc----------------
Confidence 999999953 2344444433 5555544321 1 1122211110
Q ss_pred chhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q 000379 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFL 361 (1604)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1604)
.+|+
T Consensus 239 ----------------------------------------------------------------------------~dYv 242 (674)
T KOG0922|consen 239 ----------------------------------------------------------------------------ADYV 242 (674)
T ss_pred ----------------------------------------------------------------------------hhhH
Confidence 0001
Q ss_pred HHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhC----
Q 000379 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKV---- 437 (1604)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~---- 437 (1604)
+.. +...+++-.. .+..-++||-......+.+.+.|.+.
T Consensus 243 ~a~----------------------------------~~tv~~Ih~~---E~~GDILvFLtGqeEIe~~~~~l~e~~~~~ 285 (674)
T KOG0922|consen 243 DAA----------------------------------LITVIQIHLT---EPPGDILVFLTGQEEIEAACELLRERAKSL 285 (674)
T ss_pred HHH----------------------------------HHHHHHHHcc---CCCCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 010 1111111111 23345899999998888777777654
Q ss_pred CCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCC--------
Q 000379 438 PFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL-------- 501 (1604)
Q Consensus 438 ~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~-------- 501 (1604)
+......+..++|. |+.++|..+++.--.|.-+|++||+++|..|-|+++.+||. |++
T Consensus 286 ~~~~~~~~lply~a------L~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922|consen 286 PEDCPELILPLYGA------LPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred cccCcceeeeeccc------CCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcccee
Confidence 21111245668888 99999999999988899999999999999999999999994 544
Q ss_pred --CCCHHHHHHHhhhhcccCc-eEEEEEec
Q 000379 502 --PKTVSSYIQSRGRARQHNS-QFILMLER 528 (1604)
Q Consensus 502 --p~s~~syiQr~GRA~R~gs-~~i~~v~~ 528 (1604)
|-|-.+-.||.|||||.|. +++-++.+
T Consensus 360 v~~ISkasA~QRaGRAGRt~pGkcyRLYte 389 (674)
T KOG0922|consen 360 VVPISKASANQRAGRAGRTGPGKCYRLYTE 389 (674)
T ss_pred EEechHHHHhhhcccCCCCCCceEEEeeeH
Confidence 4477888999999999985 57777653
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=143.36 Aligned_cols=142 Identities=26% Similarity=0.321 Sum_probs=108.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC--CcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~--~~v~~~~G~~~~~~~~~~~ 137 (1604)
+++++.++||+|||.+++.++.+... .+..+++++++|++.|+.|+.+.+..... ..+..+.+..... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~----~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD----SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIK----QQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh----cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchh----HH
Confidence 47899999999999999999888765 23456799999999999999999998875 7787777754322 23
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
+.......+|+++|++.+...+.........++++|+||||++.........+. ........+++++|||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~-~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLK-ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHH-HHhhCCccceEEEEeccC
Confidence 344456899999999999887776655567889999999999976543333211 112234678999999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.4e-13 Score=175.78 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH-HH--
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD-VI-- 113 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~-~i-- 113 (1604)
..+++|+.|.++++.+. ++++++.||||+|||+++++++..... .+++++|.+||++|..|+.. .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~Lq~Ql~~~~~~~ 315 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKVLQSQLLEKDIPL 315 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 46889999999887553 477899999999999999998765432 34579999999999999865 33
Q ss_pred -HhhcC--CcEEEEECCCCC--------------C------------ccc-----------------hhHHH--------
Q 000379 114 -RVHTD--FEVEEYYGAKGV--------------D------------EWD-----------------SQCWQ-------- 139 (1604)
Q Consensus 114 -~~~~~--~~v~~~~G~~~~--------------~------------~~~-----------------~~~w~-------- 139 (1604)
.+.++ +++..+.|..+. + .|- ...|.
T Consensus 316 l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l 395 (850)
T TIGR01407 316 LNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNL 395 (850)
T ss_pred HHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCC
Confidence 44444 667767664321 0 010 00122
Q ss_pred ----------------HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 140 ----------------KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 140 ----------------~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.....++|||+.+.-|++.+.....-+....++|||||||+.
T Consensus 396 ~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 396 SKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred CCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 122456899999999988775443234556799999999985
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-13 Score=166.97 Aligned_cols=121 Identities=11% Similarity=0.173 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++.+.... ..+..+||||+++..++.|.++|.. .++....+|+. +.+|+..+..|+.+..
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~----~gI~h~vLnak--------q~~REa~Iia~AG~~g 647 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRA----KRIAHNVLNAK--------QHDREAEIVAEAGQKG 647 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHH----cCCCceeecCC--------HHHhHHHHHHhcCCCC
Confidence 468889999886653 3456899999999999999999988 47888888875 7789999999999999
Q ss_pred eEEEEccccccccCCC---Ccc-----EEEEcCCCCCHHHHHHHhhhhcccCce--EEEEEecc
Q 000379 476 NLLFATDVIEEGMHVP---NCS-----YVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip---~~n-----lVI~fD~p~s~~syiQr~GRA~R~gs~--~i~~v~~~ 529 (1604)
.|+|||+++++|+||+ .+. +||.++.|.+.+.|.|++||+||.|.. .+.|+..+
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSle 711 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLE 711 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechh
Confidence 9999999999999999 453 359999999999999999999999964 56666543
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-12 Score=161.80 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=78.5
Q ss_pred CCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHH
Q 000379 144 KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223 (1604)
Q Consensus 144 ~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~ 223 (1604)
...|++.||++|.+.+..+.++++++..|||||||++.+++.|.-|++. |+...+.|.|.||||+|..-.. + .
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rl-yr~~n~~gfIkafSdsP~~~~~-----g-~ 79 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRL-YRQKNKTGFIKAFSDNPEAFTM-----G-F 79 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHH-HHHhCCCcceEEecCCCccccc-----c-h
Confidence 6789999999999999999999999999999999999999999999975 4556678999999999985320 1 1
Q ss_pred HHHHHHHhhcCCcee--eccchhhhhhccCC
Q 000379 224 GQISELESTLDSQVF--TIEDKTEMEVFVPS 252 (1604)
Q Consensus 224 ~~i~~Le~~l~~~i~--t~~~~~~l~~~~~~ 252 (1604)
..+..+...|..+-. .+.....+..+..+
T Consensus 80 ~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~ 110 (814)
T TIGR00596 80 SPLETKMRNLFLRHVYLWPRFHVEVASSLEK 110 (814)
T ss_pred HHHHHHHHHhCcCeEEEeCCCchHHHHHhcc
Confidence 345566666655322 33455566666654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-14 Score=130.68 Aligned_cols=73 Identities=36% Similarity=0.651 Sum_probs=70.6
Q ss_pred CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC
Q 000379 441 THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN 519 (1604)
Q Consensus 441 ~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g 519 (1604)
.++.+..+||. ++..+|.++++.|++|+.+|||||+++++|||+|.+++||+||+|+|+..|+|+.||++|.|
T Consensus 6 ~~~~~~~i~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGD------MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTT------SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECC------CCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 47889999998 89999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=151.17 Aligned_cols=308 Identities=18% Similarity=0.212 Sum_probs=192.2
Q ss_pred HHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECC
Q 000379 49 YQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1604)
Q Consensus 49 yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 127 (1604)
.+.+++..+.+.+ +||+++||||||....-.+.+- .-+..+.+-+.-|.+.-+...++.+....+...+.-+|-
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 3444555555444 5688999999998654433322 223455688888999988888888888776554444331
Q ss_pred CCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCCh-HHHHHHHHHhhcCCCCcEEEE
Q 000379 128 KGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-YTKIMKEFYHKSDNKPKVFGM 206 (1604)
Q Consensus 128 ~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~im~~~~~~~~~~p~iLgL 206 (1604)
. +. .-+---....|-.||-++|+.-.... -.+.+.+.||+||||.-.-|.. ...+++.... ....-+++-+
T Consensus 435 s-IR-----FEdvT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVt 506 (1042)
T KOG0924|consen 435 S-IR-----FEDVTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVT 506 (1042)
T ss_pred E-EE-----eeecCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEe
Confidence 1 00 00111135678899999998654432 2467899999999998865522 2333343322 2235788999
Q ss_pred eccCCCCCCCCCcccHHHHHHHHHhhcC-CceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhhchhH
Q 000379 207 TASPVVRKGVSSAMDCEGQISELESTLD-SQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASL 285 (1604)
Q Consensus 207 TATP~~~~~~~~~~~~~~~i~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~ 285 (1604)
|||.. ...+.+.++ +..++...|.- |. ...|...+
T Consensus 507 SATm~--------------a~kf~nfFgn~p~f~IpGRTy-------PV--~~~~~k~p--------------------- 542 (1042)
T KOG0924|consen 507 SATMD--------------AQKFSNFFGNCPQFTIPGRTY-------PV--EIMYTKTP--------------------- 542 (1042)
T ss_pred ecccc--------------HHHHHHHhCCCceeeecCCcc-------ce--EEEeccCc---------------------
Confidence 99953 456666666 56666544321 11 11111110
Q ss_pred HHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH
Q 000379 286 SKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVL 365 (1604)
Q Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1604)
+..|++.+.
T Consensus 543 -----------------------------------------------------------------------~eDYVeaav 551 (1042)
T KOG0924|consen 543 -----------------------------------------------------------------------VEDYVEAAV 551 (1042)
T ss_pred -----------------------------------------------------------------------hHHHHHHHH
Confidence 011111111
Q ss_pred HHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHH----HHHHHHHHHhhCCCC-
Q 000379 366 HVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERII----AAKVVERFVKKVPFL- 440 (1604)
Q Consensus 366 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~----ta~~L~~~L~~~~~~- 440 (1604)
.+.- .-+.....+-.+||..... ++..|.+.|.++-.-
T Consensus 552 kq~v-------------------------------------~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 552 KQAV-------------------------------------QIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred hhhe-------------------------------------EeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 1100 0011123345788887554 445555555554222
Q ss_pred -CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCC------------------
Q 000379 441 -THLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDL------------------ 501 (1604)
Q Consensus 441 -~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~------------------ 501 (1604)
.++.+..+.+. |+...|.+++++--.|.-+|+|||+++|..|-||++.+||.-+.
T Consensus 595 ~~~L~vlpiYSQ------Lp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~ 668 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQ------LPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIV 668 (1042)
T ss_pred CCceEEEeehhh------CchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEE
Confidence 36777778777 89999999999988999999999999999999999999996332
Q ss_pred CCCHHHHHHHhhhhcccCc-eEEEEEe
Q 000379 502 PKTVSSYIQSRGRARQHNS-QFILMLE 527 (1604)
Q Consensus 502 p~s~~syiQr~GRA~R~gs-~~i~~v~ 527 (1604)
|-|-..--||.|||||.|. .++-+++
T Consensus 669 pIS~AnA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 669 PISQANADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred echhccchhhccccCCCCCcceeeehh
Confidence 4456667899999999985 4666665
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=136.93 Aligned_cols=114 Identities=36% Similarity=0.531 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCce
Q 000379 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476 (1604)
Q Consensus 397 ~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~ 476 (1604)
.|...+.+++..... .+.++|||++++..++.+.+.|.. .+..+..++|. ++..+|..++++|++|...
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~------~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGD------GSQEEREEVLKDFREGEIV 80 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECC------CCHHHHHHHHHHHHcCCCc
Confidence 688888888877642 457899999999999999999987 35678899998 7899999999999999999
Q ss_pred EEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 477 LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 477 iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
+||+|+++++|+|+|.++.||.++.|++...|+|++||++|.|+.
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~ 125 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQK 125 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCC
Confidence 999999999999999999999999999999999999999999964
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-12 Score=155.65 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=95.9
Q ss_pred CCCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc--
Q 000379 41 SINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT-- 117 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~-- 117 (1604)
...+.|+..|.--..++. ++..-+.||||.|||.-.++....+.. .++++++++||..||.|.++.++++.
T Consensus 78 ~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 78 ATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------KGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------cCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 346689999998887776 588889999999999855554444433 45789999999999999999999875
Q ss_pred -C-CcEEE-EECCCCCCccchhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC
Q 000379 118 -D-FEVEE-YYGAKGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 118 -~-~~v~~-~~G~~~~~~~~~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
+ ..+.. |||...... ++.....+ ++.+|+|+|.|.|...+.. +.--++++|++|.++.+.+.
T Consensus 152 ~~~~~~~~~yh~~l~~~e--kee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKE--KEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred cCCcceeeeeccccchHH--HHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 2 33333 677655433 22222223 4699999999988665542 11246899999999988754
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-13 Score=123.36 Aligned_cols=73 Identities=32% Similarity=0.565 Sum_probs=66.6
Q ss_pred CchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC---ceEEEeC--CCCCCccchhh
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF---GNVECNG--DPRADKKSSFD 1583 (1604)
Q Consensus 1509 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~---~~~~~~g--~~~ssKK~A~~ 1583 (1604)
+|++.|+|+|++++|+.|.|++..+ .||+|. +.|+|+|+|.+..+ +.+.+.| ++.++||+||+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~---------~Gp~~~---~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~ 69 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSE---------SGPDHR---KLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKE 69 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEec---------cCCCcc---EEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHH
Confidence 5789999999999999999999877 899998 99999999998876 5677777 88899999999
Q ss_pred hHHHHHHHHH
Q 000379 1584 SAALIMLHEL 1593 (1604)
Q Consensus 1584 ~AA~~~l~~l 1593 (1604)
.||+.||+.|
T Consensus 70 ~AA~~~L~~L 79 (80)
T PF14709_consen 70 SAAQQALQAL 79 (80)
T ss_pred HHHHHHHHhc
Confidence 9999999987
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.7e-12 Score=147.49 Aligned_cols=313 Identities=17% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEE
Q 000379 45 IPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
.-.+|-.+++.++.. +=+||.++||||||...--.+.+.. ....++++-+.-|.+.-+-..+..+.+..|.+.+.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaG----ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAG----YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcc----cccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 345566667777765 4467899999999986544443322 13345558889999998888888888877766544
Q ss_pred EECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCC-hHHHHHHHHHhhcCCCCc
Q 000379 124 YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH-PYTKIMKEFYHKSDNKPK 202 (1604)
Q Consensus 124 ~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~~~~~~~~~~p~ 202 (1604)
-+|= +...-+.--+..-+-+||-++|+.-+... ..+...++||+||||.-.-.. -...+++..... .+.-+
T Consensus 341 eVGY------sIRFEdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLK 412 (902)
T KOG0923|consen 341 EVGY------SIRFEDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLK 412 (902)
T ss_pred ccce------EEEeccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcce
Confidence 4441 11111112235678899999998877643 467889999999999865321 223333333222 24457
Q ss_pred EEEEeccCCCCCCCCCcccHHHHHHHHHhhcCC-ceeeccchhhhhhccCCcceeeeeccCCCccccchhhhhhhhhhhh
Q 000379 203 VFGMTASPVVRKGVSSAMDCEGQISELESTLDS-QVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKF 281 (1604)
Q Consensus 203 iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~-~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~ 281 (1604)
.|.+|||.. ..+....+|. .+|.+..|- -.+.++|...+.
T Consensus 413 llIsSAT~D--------------AekFS~fFDdapIF~iPGRR---------yPVdi~Yt~~PE---------------- 453 (902)
T KOG0923|consen 413 LLISSATMD--------------AEKFSAFFDDAPIFRIPGRR---------YPVDIFYTKAPE---------------- 453 (902)
T ss_pred EEeeccccC--------------HHHHHHhccCCcEEeccCcc---------cceeeecccCCc----------------
Confidence 899999943 2344455543 444433221 011223322111
Q ss_pred chhHHHHHHhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q 000379 282 DASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFL 361 (1604)
Q Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1604)
.+|+
T Consensus 454 ----------------------------------------------------------------------------AdYl 457 (902)
T KOG0923|consen 454 ----------------------------------------------------------------------------ADYL 457 (902)
T ss_pred ----------------------------------------------------------------------------hhHH
Confidence 0011
Q ss_pred HHHHHHHhhhcCccchhhccccCCcccccccCCCCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHH----HHHHHHhhC
Q 000379 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAK----VVERFVKKV 437 (1604)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~----~L~~~L~~~ 437 (1604)
+.....+ +.-+...+.+-+|||.......+ .|.+..+.+
T Consensus 458 dAai~tV-------------------------------------lqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L 500 (902)
T KOG0923|consen 458 DAAIVTV-------------------------------------LQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL 500 (902)
T ss_pred HHHHhhh-------------------------------------eeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh
Confidence 1110000 00000112234678876544333 344444444
Q ss_pred C-CCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCC-------
Q 000379 438 P-FLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDL------- 501 (1604)
Q Consensus 438 ~-~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~------- 501 (1604)
. .+..+.+..++.+ ++...|..+++---.|--+|++||+++|..|-|+++++||. |++
T Consensus 501 Gski~eliv~PiYaN------LPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL 574 (902)
T KOG0923|consen 501 GSKIRELIVLPIYAN------LPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESL 574 (902)
T ss_pred ccccceEEEeecccc------CChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeE
Confidence 2 2345667777887 89999999999989999999999999999999999999995 332
Q ss_pred ---CCCHHHHHHHhhhhcccCc-eEEEEEe
Q 000379 502 ---PKTVSSYIQSRGRARQHNS-QFILMLE 527 (1604)
Q Consensus 502 ---p~s~~syiQr~GRA~R~gs-~~i~~v~ 527 (1604)
|-|-.+-.||.|||||-|. +++-+++
T Consensus 575 ~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 575 LVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred EEeeechhhhhhhccccCCCCCCceEEeec
Confidence 4467778999999999994 5777765
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=152.10 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEE--------cCCCCCHH----------HHHHHhhhhcccC
Q 000379 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIR--------FDLPKTVS----------SYIQSRGRARQHN 519 (1604)
Q Consensus 458 m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~--------fD~p~s~~----------syiQr~GRA~R~g 519 (1604)
++.++|..+++.--.|.--|+|||+|+|..|-||++.+||. ||.-..+. +--||.|||||.|
T Consensus 614 Ls~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 614 LSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred cCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 67889999999999999999999999999999999999994 56544443 4469999999999
Q ss_pred c-eEEEEEeccCHHHHHHHHHHHHHHHhhhhccccCCchh---hhhhccccccccceeecCCCceechhhHHHHHHHHHh
Q 000379 520 S-QFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEA---CFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCE 595 (1604)
Q Consensus 520 s-~~i~~v~~~~~~~~~~l~~~~~~e~~~~~~~~~r~~~~---~~l~~~~~~~~~~y~v~~tga~l~~~~a~~~l~~yc~ 595 (1604)
. +++-++...-.. ..+++. ...+ ++ +.|-+ -.++.+..+....|..++.-...-+..|..+|...-+
T Consensus 694 pGHcYRLYSSAVf~--~~Fe~f-----S~PE-Il-k~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgA 764 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFS--NDFEEF-----SLPE-IL-KKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGA 764 (1172)
T ss_pred CCceeehhhhHHhh--cchhhh-----ccHH-Hh-hCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhcc
Confidence 5 567666532111 011111 0100 11 11211 1223344445556767777778889999998877654
Q ss_pred h
Q 000379 596 M 596 (1604)
Q Consensus 596 ~ 596 (1604)
.
T Consensus 765 L 765 (1172)
T KOG0926|consen 765 L 765 (1172)
T ss_pred c
Confidence 4
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=152.60 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=98.6
Q ss_pred HHHHHHHHhhc--------------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 49 YQLKVFEVAKR--------------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 49 yQ~e~l~~~l~--------------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
||.+++.++.. +++|+++++|+|||++++.++..+.... .......+|||||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~-~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF-PQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC-TTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc-ccccccceeEeecc-chhhhhhhhhc
Confidence 79999887731 5689999999999999999988665411 11122359999999 88899999999
Q ss_pred hhc---CCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH---HHhcCcCccceeEEEEeCcccccCCChHHH
Q 000379 115 VHT---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA---LRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 115 ~~~---~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~---l~~~~~~l~~i~llI~DEaH~~~~~~~~~~ 188 (1604)
+++ .+++..+.|.. .............+|+|+|++.+... -....+..-++++||+||+|.+.+.. ..
T Consensus 79 ~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDS----ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HHSGT-TS-EEEESSSC----HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SH
T ss_pred ccccccccccccccccc----ccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cc
Confidence 998 46777776654 01111223345789999999999811 00111222459999999999996432 22
Q ss_pred HHHHHHhhcCCCCcEEEEeccCCCCC
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 189 im~~~~~~~~~~p~iLgLTATP~~~~ 214 (1604)
..+.+.. -..+++++|||||..+.
T Consensus 153 ~~~~l~~--l~~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 153 RYKALRK--LRARYRWLLSGTPIQNS 176 (299)
T ss_dssp HHHHHHC--CCECEEEEE-SS-SSSG
T ss_pred ccccccc--cccceEEeecccccccc
Confidence 2222211 13788999999999874
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=146.64 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=94.5
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH----H
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD----V 112 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~----~ 112 (1604)
..+++|+-|.++...+. ++.++|-|+||+|||+.|++++..... ..+++++|-++|+.|.+|... .
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~-----~~~~~vvIsT~T~~LQ~Ql~~kDiP~ 328 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK-----KKEEPVVISTYTIQLQQQLLEKDIPL 328 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh-----ccCCeEEEEcCCHHHHHHHHHhhHHH
Confidence 46899999999888764 367889999999999999998765433 245679999999999999765 3
Q ss_pred HHhhcC--CcEEEEECCCCC--------------------------Cccc-----------------hhHHH--------
Q 000379 113 IRVHTD--FEVEEYYGAKGV--------------------------DEWD-----------------SQCWQ-------- 139 (1604)
Q Consensus 113 i~~~~~--~~v~~~~G~~~~--------------------------~~~~-----------------~~~w~-------- 139 (1604)
+++.++ +++.++.|..+. -.|. ...|.
T Consensus 329 L~~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~ 408 (928)
T PRK08074 329 LQKIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGES 408 (928)
T ss_pred HHHHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcc
Confidence 555554 455555543220 0000 00122
Q ss_pred ------------------HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 140 ------------------KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 140 ------------------~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.....++|||+....|+..+..+.--+...+.+|||||||+-
T Consensus 409 c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 409 DGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred cCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 223467899999999988774433335667999999999995
|
|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=125.69 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=73.2
Q ss_pred ccccccccC-CCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC
Q 000379 1487 CKKAYCMTV-GTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF 1565 (1604)
Q Consensus 1487 ~~~~~~~~~-~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~ 1565 (1604)
|......++ ..|..--+.+...|||+.||||||+++..+ .|+++++ +||+|. +.|++.|.|.
T Consensus 86 ~~~~f~~~~d~~~~~~i~~~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~---------~GpdH~---~~Ftv~V~V~---- 148 (183)
T PHA02701 86 CDTLFGGDIDVLTVSAVMRLKTLNPVSAVNEFCMRTHRPL-EFCETRS---------GGHDHC---PLFTCTIVVS---- 148 (183)
T ss_pred ccccccCccccccHHHhhcCCCCCccHHHHHHHHhcCCCC-eEEEEEe---------ECCCCC---ceEEEEEEEC----
Confidence 344444443 235555567778899999999999999888 8999887 899999 9999999883
Q ss_pred ceEEEeCCCCCCccchhhhHHHHHHHHHHHc
Q 000379 1566 GNVECNGDPRADKKSSFDSAALIMLHELERQ 1596 (1604)
Q Consensus 1566 ~~~~~~g~~~ssKK~A~~~AA~~~l~~l~~~ 1596 (1604)
+...+.|.| +|||+|||.||+.||..|...
T Consensus 149 g~~~g~G~G-~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 149 GKVVATASG-CSKKLARHAACADALTILINN 178 (183)
T ss_pred CEEEEEEEe-CCHHHHHHHHHHHHHHHHHhh
Confidence 556667777 669999999999999998543
|
|
| >COG0571 Rnc dsRNA-specific ribonuclease [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=134.73 Aligned_cols=112 Identities=26% Similarity=0.375 Sum_probs=96.8
Q ss_pred CCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCC---CCCCCCchHHHHHHHHhcCCcceee-ee-eeCce
Q 000379 1324 MKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP---DKLELPPLRELIELCDSLGYFVKEN-CT-LKGEM 1398 (1604)
Q Consensus 1324 ~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~---~~~~~~p~~~L~e~~~~~~~~~~~~-~~-~~g~~ 1398 (1604)
...+++++|+|||+|||||+|+|+ +.+++|+.+++.+.+.. ....+||++.||||+|+.++..|.| +. ..|+.
T Consensus 113 ~~~~silaD~~EAligAiylD~g~--~~~~~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~ 190 (235)
T COG0571 113 RRRESILADAFEALIGAIYLDSGL--EAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPA 190 (235)
T ss_pred CCchhHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCC
Confidence 557899999999999999999995 99999999999888763 2223799999999999999988844 33 34654
Q ss_pred --EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1399 --VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1399 --~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
+.|++.|.++|. ..+.|.|+|||+|++.||+.||+.|..
T Consensus 191 h~~~F~v~v~v~~~-~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 191 HDKEFTVEVAVGGK-ELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred CCceEEEEEEECCe-eEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 899999999995 899999999999999999999999976
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-10 Score=145.98 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHH-HHH--
Q 000379 42 INFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY-DVI-- 113 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~-~~i-- 113 (1604)
..+++|+-|.++...+. ++.+++.++||+|||+++++++.... .+.++||++||++|.+|.. +.+
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 35899999999887664 36688999999999999999865432 2456999999999999993 444
Q ss_pred -HhhcCCcEEEEECCCCCC--------------------------cc-----------------chhHHHH---------
Q 000379 114 -RVHTDFEVEEYYGAKGVD--------------------------EW-----------------DSQCWQK--------- 140 (1604)
Q Consensus 114 -~~~~~~~v~~~~G~~~~~--------------------------~~-----------------~~~~w~~--------- 140 (1604)
.+.+++++..+.|+.+.- .| ....|..
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 445677777666543200 01 0011221
Q ss_pred ---------------hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 141 ---------------EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 141 ---------------~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
....++|||+....|+..+..+. .+...+.+|||||||+.
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 12456899999998887765443 25678999999999985
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=115.08 Aligned_cols=80 Identities=40% Similarity=0.689 Sum_probs=73.5
Q ss_pred HHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHH
Q 000379 430 VERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509 (1604)
Q Consensus 430 L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syi 509 (1604)
+++.|... ++.+..+||. ++.++|.++++.|++|...+||+|+++++|+|+|.++.||.+++|++...|+
T Consensus 3 l~~~l~~~----~~~~~~~~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~ 72 (82)
T smart00490 3 LAELLKEL----GIKVARLHGG------LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHHC----CCeEEEEECC------CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHH
Confidence 45566652 6788999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccC
Q 000379 510 QSRGRARQHN 519 (1604)
Q Consensus 510 Qr~GRA~R~g 519 (1604)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999976
|
|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=121.71 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=74.1
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccccCC
Q 000379 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFND 984 (1604)
Q Consensus 905 ~~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~ 984 (1604)
..+.|.+|.+.|+++.|.|.+|.+|++|.|.|+.. ++...||.+||+++||+.|.+++||||++....+ +.
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~-~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~--~~------ 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKS-DGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRR--DP------ 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCC-CCCeeeHHHHHHHHcCCccccCCCCcEEeecccc--cc------
Confidence 45789999999999999999999999999999853 3347899999999999999999999999964332 00
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeCcccceeeccc
Q 000379 985 GGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVP 1018 (1604)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip 1018 (1604)
.......++||||+|.+.+++
T Consensus 97 -------------~~~~~~~iyL~pElC~ltglt 117 (117)
T cd02845 97 -------------RGGEKEPIYLIPELCFLTGLT 117 (117)
T ss_pred -------------CCCCCcEEEEchHHhhhcCCC
Confidence 001233478999999998764
|
In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might |
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-11 Score=110.04 Aligned_cols=68 Identities=28% Similarity=0.481 Sum_probs=59.4
Q ss_pred CchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHH
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588 (1604)
Q Consensus 1509 ~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~ 1588 (1604)
|||+.|+||||+++|..|.|+++.. +||.|. +.|+|.|.+. +...+.|.| +|||.||+.||+.
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~sKk~Ak~~AA~~ 63 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEE---------EGPDHA---PRFTVEVTVG----GKITGEGEG-SSKKEAKQNAAEA 63 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeee---------eCCCCC---CeEEEEEEEC----CEEEEEeec-CCHHHHHHHHHHH
Confidence 6889999999999999999999776 799998 8999999883 456677777 5799999999999
Q ss_pred HHHHH
Q 000379 1589 MLHEL 1593 (1604)
Q Consensus 1589 ~l~~l 1593 (1604)
||+.|
T Consensus 64 al~~L 68 (68)
T cd00048 64 ALRKL 68 (68)
T ss_pred HHHhC
Confidence 99865
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-09 Score=133.22 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hcC
Q 000379 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTD 118 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~ 118 (1604)
..+.|++.|.-..-.++. .-|+.|.||.|||++|.+++..... .++.|-+++|+--|+.|-++.+.. ++|
T Consensus 75 lg~r~ydvQlig~l~Ll~-G~VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLA-GDVIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred cCCCcchHHHHHHHHHhC-CCcccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 356778888777766654 4578999999999999997765443 345589999999999998888775 468
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhc------CcCccceeEEEEeCccccc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKA------FLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~------~~~l~~i~llI~DEaH~~~ 181 (1604)
+.|+.+.+++..+. +...-.+||+.+|...| .+.|+.. ......+++.|+||++.+.
T Consensus 148 Lsvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 148 LTVGWITEESTPEE------RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CEEEEECCCCCHHH------HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999988765332 12222689999999765 2333222 2234568899999999885
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-10 Score=140.10 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh---cCC
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---TDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~---~~~ 119 (1604)
.+.|++.|.-.- .++.+.-|+-|.||.|||++|.+++..... .++.|-+++|+-.|+.|-++.+..+ +|+
T Consensus 80 Gm~~ydVQliGg-~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 80 GMRHFDVQLIGG-MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCCcchhHHHhh-hHhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 345555555332 335678899999999999999998765433 3455899999999999998888765 489
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhcC------cCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAF------LSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~~------~~l~~i~llI~DEaH~~~ 181 (1604)
.|+.+.|++.... ++..-.++|+++|...| .+.|+... .....+.++|+||+|.+.
T Consensus 153 ~v~~i~~~~~~~e------rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEE------KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHH------HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999988765432 12222489999999887 34443321 123778999999999986
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=143.47 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~ 474 (1604)
.+.|+..+.++|.........++|||++-...+..+...|.. .++....+.|. |+.+.|.+++..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----~~~~~~~~~g~------~~~~~r~~s~~~~~~~~ 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----KGFVFLRYDGE------MLMKIRTKSFTDFPCDP 589 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh----cccccchhhhh------hHHHHHHhhhcccccCc
Confidence 477888888888744322224899999999999888877763 56777788888 89999999999999653
Q ss_pred -ce-EEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCceEEEE
Q 000379 475 -VN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILM 525 (1604)
Q Consensus 475 -~~-iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~~i~~ 525 (1604)
.+ .+++..++..|+|+-.+++|++.|+.||+..-.|.+-||.|.|++--++
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceee
Confidence 33 4578999999999999999999999999999999999999999863333
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-11 Score=106.41 Aligned_cols=66 Identities=24% Similarity=0.382 Sum_probs=57.6
Q ss_pred chhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHH
Q 000379 1510 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1589 (1604)
Q Consensus 1510 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~ 1589 (1604)
||+.|+||||+++| .|.|+++.+ +||+|. +.|+|.|.+. +...+.|.| +|||.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~---------~g~~~~---~~f~~~v~i~----~~~~~~g~g-~sKk~Ak~~AA~~a 62 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKE---------EGPDHA---PRFTVTVKVG----GEYTGEGEG-SSKKEAKQRAAEAA 62 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEee---------eCCCCC---CcEEEEEEEC----CEEEEEecc-CCHHHHHHHHHHHH
Confidence 67999999999999 899999886 799998 8999999883 445566776 67999999999999
Q ss_pred HHHH
Q 000379 1590 LHEL 1593 (1604)
Q Consensus 1590 l~~l 1593 (1604)
|+.|
T Consensus 63 l~~L 66 (67)
T smart00358 63 LRSL 66 (67)
T ss_pred HHhc
Confidence 9977
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-11 Score=122.73 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=64.2
Q ss_pred ccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCcc
Q 000379 1500 VAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKK 1579 (1604)
Q Consensus 1500 ~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK 1579 (1604)
...++++..|||+.||||||+++... |..+++ +||+|. +.|++.|.|. +.....|.| +|||
T Consensus 101 ~k~~d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~---------~Gp~H~---p~F~v~V~I~----g~~~g~G~G-~SKK 161 (183)
T PHA03103 101 KKIISWKDKNPCTVINEYCQITSRDW--SINITS---------SGPSHS---PTFTASVIIS----GIKFKPAIG-STKK 161 (183)
T ss_pred hhhhccccCChhHHHHHHHHHhCCCe--EEEEEe---------eCCCCC---ceEEEEEEEC----CEEEEEeee-CCHH
Confidence 34468888999999999999998875 656666 799999 9999999884 445566777 6699
Q ss_pred chhhhHHHHHHHHHHHc
Q 000379 1580 SSFDSAALIMLHELERQ 1596 (1604)
Q Consensus 1580 ~A~~~AA~~~l~~l~~~ 1596 (1604)
+|||.||+.||..|...
T Consensus 162 eAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 162 EAKNNAAKLAMDKILNY 178 (183)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999543
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-09 Score=132.80 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHhhc-------cCE--EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 45 IPRIYQLKVFEVAKR-------RNT--IAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-------~n~--Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
.-..||-.|++.+.. ... +-.+.||+|||++=.-+|..+.. ...+.|..|-.-.|.|--|.-+++++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd----~~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD----DKQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC----CCCCceEEEEccccceeccchHHHHH
Confidence 346799999998752 333 33478999999987777666543 34455777777888888888888888
Q ss_pred hcCC---cEEEEECCC----------------------CCCccc---h----hHHH------------------HhcCCC
Q 000379 116 HTDF---EVEEYYGAK----------------------GVDEWD---S----QCWQ------------------KEINKN 145 (1604)
Q Consensus 116 ~~~~---~v~~~~G~~----------------------~~~~~~---~----~~w~------------------~~~~~~ 145 (1604)
-+++ ...++.|+. +.+.+- . -.|+ ..+-..
T Consensus 484 rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~a 563 (1110)
T TIGR02562 484 RLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAA 563 (1110)
T ss_pred hcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcC
Confidence 6654 344444431 111100 0 0011 111235
Q ss_pred cEEEEcHHHHHHHHH--h-cCcCcc--c--eeEEEEeCcccccCCChHHHHHHHHHh-hcCCCCcEEEEeccCC
Q 000379 146 DVLVMTPQILLDALR--K-AFLSLD--I--VCFIVIDECHHATGNHPYTKIMKEFYH-KSDNKPKVFGMTASPV 211 (1604)
Q Consensus 146 ~ViV~T~q~Ll~~l~--~-~~~~l~--~--i~llI~DEaH~~~~~~~~~~im~~~~~-~~~~~p~iLgLTATP~ 211 (1604)
.|+|||+..++.... + +...+. . =+.|||||+|-+-.. .... +..+++ ...-..+++.||||..
T Consensus 564 pv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~-L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 564 PVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPA-LLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred CeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHH-HHHHHHHHHHcCCCEEEEeCCCC
Confidence 899999998876652 2 221111 1 258999999987321 2222 222222 1234578999999965
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.2e-11 Score=130.18 Aligned_cols=73 Identities=25% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~ 1587 (1604)
+.|.+.|||+|.+++. .|.|++.++ +||+|. +.|+++|++ +.++|+|+|+ |||.||+.||.
T Consensus 38 KS~IS~l~E~~~r~~~-~v~fevl~e---------eGp~H~---~~fv~rvtv-----g~~~a~GeG~-sKK~AKh~AA~ 98 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGL-TPVYEVLRE---------EGPPHM---PNFVFRVTV-----GEITATGEGK-SKKLAKHRAAE 98 (339)
T ss_pred CChHHHHHHHHHHhCC-Ccceeeeec---------cCCccC---CCeEEEEEE-----eeeEEecCCC-chhHHHHHHHH
Confidence 4466999999999998 459999998 999999 899999998 4789999995 49999999999
Q ss_pred HHHHHHHHcCee
Q 000379 1588 IMLHELERQGKI 1599 (1604)
Q Consensus 1588 ~~l~~l~~~~~~ 1599 (1604)
.||..|++.-.|
T Consensus 99 ~~L~~lk~l~~l 110 (339)
T KOG3732|consen 99 ALLKELKKLPPL 110 (339)
T ss_pred HHHHHHhcCCCc
Confidence 999999886543
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-07 Score=121.74 Aligned_cols=63 Identities=30% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHHhh---c-------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK---R-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l---~-------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 110 (1604)
.+++|+-|.+|...+. . +.++|-|+||+|||+.|++++..... ..+++|||-+.|++|-+|..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~-----~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR-----AEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH-----HcCCeEEEEcCCHHHHHHHH
Confidence 5899999999887664 2 34678899999999999998765433 24566999999999998875
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-10 Score=127.47 Aligned_cols=103 Identities=20% Similarity=0.387 Sum_probs=82.1
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCC--CCCee--EEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcccccccc
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPF--LTHLT--VAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGM 488 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~--~~~~~--~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vleeGI 488 (1604)
.+.|||-||..|..++.+....+.+-. -+++. +..+.|. -...+|+++....-.|++.-+|||+++|-||
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG------Y~A~DRRKIE~~~F~G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG------YIAEDRRKIESDLFGGKLCGIIATNALELGI 597 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc------cchhhHHHHHHHhhCCeeeEEEecchhhhcc
Confidence 346999999999999877665544210 01111 1112233 6788999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 489 HVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 489 Dip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
||...+.|+..+.|.|...+.|..|||||.+..
T Consensus 598 DIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 598 DIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 999999999999999999999999999998854
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-10 Score=110.14 Aligned_cols=132 Identities=22% Similarity=0.280 Sum_probs=80.1
Q ss_pred cCEEEEeCCCChHHHHHH-HHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAV-MLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliai-lli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+-.++-+.+|+|||.-.+ -++++.+. .+.++|+|.||+.++....+.++.. .+..-.. ...
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~--~~~------- 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTN--ARM------- 66 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTTS---SEEEEST--TSS-------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhcC---CcccCce--eee-------
Confidence 346788999999998543 35555555 5677999999999999888887632 2221111 110
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhh--cCCCCcEEEEeccCCCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~--~~~~p~iLgLTATP~~~ 213 (1604)
.....+.-|-|||+..+...+.. ...+.++++||+||||-. + |..-....+.+. .....+++.|||||-..
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-D--p~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-D--PTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---S--HHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-C--HHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 02234677899999999887766 456789999999999986 2 333222222222 22345899999999743
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=115.79 Aligned_cols=204 Identities=24% Similarity=0.241 Sum_probs=154.9
Q ss_pred CChHHHHHhhccCCCC-------------------CCCCcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhc
Q 000379 1057 IPSSLILEALTTLGCC-------------------ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVC 1117 (1604)
Q Consensus 1057 ~~~~lll~AlT~~s~~-------------------~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~ 1117 (1604)
++.+.++.|+|.+|+. ...+|+-|--.|-.|+.+.++.||-++||..+|-.++.+=+.+++
T Consensus 77 is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ 156 (333)
T KOG3769|consen 77 ISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLG 156 (333)
T ss_pred ccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhh
Confidence 4567888888888762 235789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCCCCCCCcccccCCCCccccccccccCCccCCCccccCCchh
Q 000379 1118 NSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTI 1197 (1604)
Q Consensus 1118 N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~l 1197 (1604)
...|+.+|..+|+.++++++.|.+- + ....+++.
T Consensus 157 ee~LahiAt~lGie~l~~seeFp~~-----~-----------------------------------------eisq~ess 190 (333)
T KOG3769|consen 157 EEVLAHIATHLGIEELGLSEEFPKV-----G-----------------------------------------EISQDESS 190 (333)
T ss_pred HHHHHHHHHHhhHHHHhhcccCCCc-----h-----------------------------------------hhhHHHHH
Confidence 9999999999999999999986531 0 00124677
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHhCCcccccchhhhhhhhcccccccCCCHHHHHHHHHHhCCccCCHHHHHHHHcc
Q 000379 1198 ADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKDIESKIGYEFTVKFLLQEAITH 1277 (1604)
Q Consensus 1198 ADvvEAliGA~~~~~G~~~a~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH 1277 (1604)
++++=||+|+.+...|+....+|+..-.+
T Consensus 191 ~~aI~Al~~~~~~ek~~~~v~dFI~~qi~--------------------------------------------------- 219 (333)
T KOG3769|consen 191 RRAIGALLGSVGLEKGFNFVRDFINDQIL--------------------------------------------------- 219 (333)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhh---------------------------------------------------
Confidence 77877777776666665555444311000
Q ss_pred CCCCCCCchHHHHHHhcccChHHHHHHHHHHHcCCCCCCCCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHH
Q 000379 1278 ASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFK 1357 (1604)
Q Consensus 1278 ~S~~~~~~ye~L~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~ 1357 (1604)
+..++..++|.
T Consensus 220 ------------------------------------------------------------------~k~L~~~~m~q--- 230 (333)
T KOG3769|consen 220 ------------------------------------------------------------------SKDLDPREMWQ--- 230 (333)
T ss_pred ------------------------------------------------------------------hhccchHhhcc---
Confidence 00011111111
Q ss_pred hhhccccCCCCCCCCchHHHHHHHHhcCCcce--eeeeeeCce---EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHH
Q 000379 1358 PILSPIVTPDKLELPPLRELIELCDSLGYFVK--ENCTLKGEM---VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432 (1604)
Q Consensus 1358 ~~l~~~i~~~~~~~~p~~~L~e~~~~~~~~~~--~~~~~~g~~---~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~A 1432 (1604)
..+|...|.++|++.+..-+ ....+.|+. +.|.|.++.|.+ .+|.|.|.|-+.|+..||..|
T Consensus 231 ------------l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kk-llGqG~Gesl~~A~e~AA~dA 297 (333)
T KOG3769|consen 231 ------------LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKK-LLGQGQGESLKLAEEQAARDA 297 (333)
T ss_pred ------------ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCch-hhccCcchHHHHHHHHHHHHH
Confidence 14799999999999998765 334455653 889999999885 999999999999999999999
Q ss_pred HHHhhhh
Q 000379 1433 LKKLEVC 1439 (1604)
Q Consensus 1433 L~~L~~~ 1439 (1604)
|.++..+
T Consensus 298 L~k~y~~ 304 (333)
T KOG3769|consen 298 LIKLYDH 304 (333)
T ss_pred HHHHHcC
Confidence 9999873
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-08 Score=124.35 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC-
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~- 474 (1604)
..|..++++-+.... ..+..+||.|.+...++.|.++|.+ .++...+++... ...-.+++. +.|.
T Consensus 409 ~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~----~gi~h~vLNAk~-------~e~EA~IIa--~AG~~ 474 (925)
T PRK12903 409 HAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLE----ANIPHTVLNAKQ-------NAREAEIIA--KAGQK 474 (925)
T ss_pred HHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH----CCCCceeecccc-------hhhHHHHHH--hCCCC
Confidence 467888777665443 3456799999999999999999998 467777777652 222233443 5564
Q ss_pred ceEEEEccccccccCCCCcc--------EEEEcCCCCCHHHHHHHhhhhcccCc
Q 000379 475 VNLLFATDVIEEGMHVPNCS--------YVIRFDLPKTVSSYIQSRGRARQHNS 520 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip~~n--------lVI~fD~p~s~~syiQr~GRA~R~gs 520 (1604)
-.|.|||+++++|.||.--. +||--..+.|.+---|.+|||||.|.
T Consensus 475 GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 475 GAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred CeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 57999999999999997433 89999999999999999999999994
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=128.66 Aligned_cols=135 Identities=10% Similarity=0.076 Sum_probs=101.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC-CcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-FEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~-~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
.|..+-+|||||-+++-+|.+.+. .++.+|||+|.+.|..|..+.|+..++ ..+..++++.+... ..+.|..
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~------~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~ 235 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR------AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLA 235 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH------cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHH
Confidence 344444699999999999999886 456699999999999999999999997 88999998876543 4566887
Q ss_pred hcCC-CcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc---CCChH--HHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 141 EINK-NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT---GNHPY--TKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 141 ~~~~-~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~--~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
...+ .+|||+|-..+ |..+.++.|||+||-|... ...|| .+-+..+ ........+++-||||.
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHART 304 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCC
Confidence 7654 79999997655 7889999999999999765 11333 1222211 12224567788899986
|
|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-10 Score=118.34 Aligned_cols=106 Identities=33% Similarity=0.461 Sum_probs=87.5
Q ss_pred cccccCcEEEeccCC--ceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccc
Q 000379 904 AKNLKDMVVLAIHTG--RIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVN 981 (1604)
Q Consensus 904 ~~~l~~~vV~~~~~~--~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~ 981 (1604)
.+.++|+.|.+.|++ +.|.|.+|.++.+|.+.|+.. ++...|+++||+++||+.|.+|+||+|.++...+
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~-~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~------- 97 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDN-DGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKK------- 97 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEET-TSEEEEHHHHHHHTCT---SSTTSEEEEECSTTT-------
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecC-CCceEEhHHHHHhhhhcccccCCCCeEEeccCCC-------
Confidence 346889999999988 899999999999999999864 4678999999999999999999999999874432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceeeeCcccceeecccHHHHHHHhhcHHHHHHHHH
Q 000379 982 FNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLLPSVMQRLES 1037 (1604)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip~~~~~~~~~lPsi~~ri~~ 1037 (1604)
...+++|||+|.+.+++...|......||+|+|.+.
T Consensus 98 --------------------~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 98 --------------------KQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp --------------------TTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHS
T ss_pred --------------------CceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHh
Confidence 023579999999999999999999999999999874
|
It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A .... |
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-10 Score=99.77 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=51.6
Q ss_pred chhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHH
Q 000379 1510 PRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIM 1589 (1604)
Q Consensus 1510 ~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~ 1589 (1604)
||+.|+|||+++++++|.|.+..+ .|+.|. +.|+|+|.+ .+...+.|.| +|||+||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~---------~~~~~~---~~f~~~~~i----~~~~~~~g~g-~sKk~Ak~~AA~~a 63 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEE---------GPSHHR---PRFICTVYI----DGKEYGEGEG-SSKKEAKQQAAKKA 63 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEE---------SSSSSS---EEEEEEEEE----TTEEEEEEEE-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEe---------CCCCCC---ceEEEEEEE----CCEEEeEecc-CCHHHHHHHHHHHH
Confidence 679999999999988776655554 344444 688888877 3455556666 67999999999999
Q ss_pred HHHH
Q 000379 1590 LHEL 1593 (1604)
Q Consensus 1590 l~~l 1593 (1604)
|+.|
T Consensus 64 l~~L 67 (67)
T PF00035_consen 64 LQKL 67 (67)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-08 Score=116.00 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhC--CCCCC------------eeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC---c
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKV--PFLTH------------LTVAYLTGSTTSVDALTPKVQKEVLESFRGGK---V 475 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~--~~~~~------------~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~---~ 475 (1604)
.+.+.|||.+...+.+.|.++|.+. |.-.+ .....+.|. -+..+|+..+++|.+.- .
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~------t~a~~rekLinqfN~e~~lsW 791 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGT------TSAADREKLINQFNSEPGLSW 791 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCC------cccchHHHHHHhccCCCCcee
Confidence 4578999999999999999999763 21111 112233444 46788999999998642 3
Q ss_pred eEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
-+|++|....-|||+-..|-+|.||..|++.--.|.+-|+-|.|++
T Consensus 792 lfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 792 LFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred eeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc
Confidence 5788999999999999999999999999999999999999999986
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-07 Score=119.13 Aligned_cols=70 Identities=23% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCCCCCcHHHHHHHHHhh----c-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 41 SINFIPRIYQLKVFEVAK----R-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l----~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
-..++||+.|.+++..+. + +.+++-+|||+|||+.+++++..... ..++++++.++|+.|.+|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~-----~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAR-----EEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHH-----HcCCcEEEECCCHHHHHHHHHhhcc
Confidence 346899999999998664 2 44899999999999999998776654 2336699999999999988777544
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-08 Score=114.36 Aligned_cols=113 Identities=25% Similarity=0.320 Sum_probs=82.0
Q ss_pred cEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhC--CCceEEEEccccccccCCCC
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRG--GKVNLLFATDVIEEGMHVPN 492 (1604)
Q Consensus 415 ~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~--g~~~iLIaT~vleeGIDip~ 492 (1604)
.+++-|.. ...-.+...+.+. .+.++.++.|. ++++.|..--..|.+ ++++|||||++.+.|+|+ +
T Consensus 359 DCvV~FSk--k~I~~~k~kIE~~---g~~k~aVIYGs------LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~ 426 (700)
T KOG0953|consen 359 DCVVAFSK--KDIFTVKKKIEKA---GNHKCAVIYGS------LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-N 426 (700)
T ss_pred CeEEEeeh--hhHHHHHHHHHHh---cCcceEEEecC------CCCchhHHHHHHhCCCCCccceEEeeccccccccc-c
Confidence 34455543 2334444555553 24569999998 899999888889988 899999999999999999 6
Q ss_pred ccEEEEcCCC---------CCHHHHHHHhhhhcccCce----EEEEEeccCHHHHHHHHHHHH
Q 000379 493 CSYVIRFDLP---------KTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 493 ~nlVI~fD~p---------~s~~syiQr~GRA~R~gs~----~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
++-||.|++- -+..+-.|-.|||||.|++ ++.-+. .++...+.+.++
T Consensus 427 IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~---~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 427 IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH---SEDLKLLKRILK 486 (700)
T ss_pred eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee---HhhHHHHHHHHh
Confidence 8889988764 3678889999999999986 333333 334445555543
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=127.19 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=98.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
++++|+--||||||+..+-++..+.+ ....+.|+|||.++.|-.|..++|..+........ ... +.+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~----~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~-----s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLE----LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAE-----STSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHh----ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-ccc-----CHHHHH
Confidence 46899999999999999888877766 25667799999999999999999997653222111 211 223334
Q ss_pred HhcC--CCcEEEEcHHHHHHHHHhc--CcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCCC
Q 000379 140 KEIN--KNDVLVMTPQILLDALRKA--FLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKG 215 (1604)
Q Consensus 140 ~~~~--~~~ViV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~ 215 (1604)
..++ ...|||+|-|.|-...... ...-.+--++|+||||+.-.. -....|+..+ ++...+|+|+||+....
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~~~~~~----~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKLLKKAL----KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHHHHHHh----ccceEEEeeCCcccccc
Confidence 4443 3489999999998777553 111222337999999998533 3344444433 34678999999998654
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.7e-09 Score=129.46 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=89.5
Q ss_pred HHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc------C
Q 000379 50 QLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT------D 118 (1604)
Q Consensus 50 Q~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~------~ 118 (1604)
|.++++.+. ++.+++.++||+|||+++++++...+. ...++++||++||++|.+|+.+.+.... +
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~----~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~ 77 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK----ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGP 77 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH----hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCC
Confidence 777776664 366889999999999999998766543 1234679999999999999999877543 3
Q ss_pred CcEEEEECCCCCC---------------------ccc----------------------------------------h--
Q 000379 119 FEVEEYYGAKGVD---------------------EWD----------------------------------------S-- 135 (1604)
Q Consensus 119 ~~v~~~~G~~~~~---------------------~~~----------------------------------------~-- 135 (1604)
+++..+.|..+.- .|. .
T Consensus 78 i~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~ 157 (636)
T TIGR03117 78 VQAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDV 157 (636)
T ss_pred eeEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhh
Confidence 4555555532100 010 0
Q ss_pred -------------hHHHHh---cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 136 -------------QCWQKE---INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 136 -------------~~w~~~---~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.. ...++|||+++..|+..+..+.--+...+.||||||||+.
T Consensus 158 ~~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~ 219 (636)
T TIGR03117 158 TLAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFE 219 (636)
T ss_pred hccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchH
Confidence 001111 4678999999999988765544345668999999999985
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-07 Score=115.80 Aligned_cols=126 Identities=20% Similarity=0.117 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH---HhhcCC
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI---RVHTDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i---~~~~~~ 119 (1604)
.+.|++-|.-..- ++.++-|+-|.||-|||++|.+++.-..- .++.|-+++++..|+.+-++.+ -+++|+
T Consensus 74 G~r~ydvQlig~l-~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 74 GLRHFDVQLIGGL-VLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred CCCCCchHhhhhH-hhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 4566777766542 34678899999999999999998743221 3445899999999998755554 557899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHHhc------CcCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKA------FLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~~~------~~~l~~i~llI~DEaH~~~ 181 (1604)
.|+.+.+++.... ++..=.++|+.+|...| .+.|+.. ......+.+.|+||++.+.
T Consensus 147 svg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEE------RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHH------HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999888765443 12222579999999755 2333322 1234568899999999886
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=119.02 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=107.9
Q ss_pred cHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH----hhcCCc
Q 000379 47 RIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR----VHTDFE 120 (1604)
Q Consensus 47 r~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~----~~~~~~ 120 (1604)
.+.|.+.+.-.- +.|++|.+|+|||||.+|-+++.. .....++++++|.-+.+.-++..+. ..+|..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 566777776664 388999999999999999887654 3456779999999887766555544 456889
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCCh-----HHHHHHHHHh
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP-----YTKIMKEFYH 195 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~-----~~~im~~~~~ 195 (1604)
+..+.|..+.+. +.+...+|+++||+.+-.. . ....+++.|.||.|...+.+. ... |+.+..
T Consensus 1218 ~~~l~ge~s~~l-------kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1218 IVKLTGETSLDL-------KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred EEecCCccccch-------HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 999999888774 4566889999999998544 2 567899999999999986432 111 443334
Q ss_pred hcCCCCcEEEEeccCC
Q 000379 196 KSDNKPKVFGMTASPV 211 (1604)
Q Consensus 196 ~~~~~p~iLgLTATP~ 211 (1604)
+..+.-|+++||-+..
T Consensus 1285 q~~k~ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLA 1300 (1674)
T ss_pred HHHhheeEEEeehhhc
Confidence 4456778999987754
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-08 Score=110.02 Aligned_cols=152 Identities=17% Similarity=0.080 Sum_probs=88.0
Q ss_pred cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
..|+.+.++.... +-++++++||||||...--...+... .. .+-|...-|.+.-+.+.+.......++..+.-+
T Consensus 49 w~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~---~~--~~~v~CTQprrvaamsva~RVadEMDv~lG~EV 123 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL---SH--LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEV 123 (699)
T ss_pred HHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH---hh--ccceeecCchHHHHHHHHHHHHHHhccccchhc
Confidence 4455555555543 55678999999999754443333221 11 133777889988888888888887777666555
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-ChHHHHHHHHHhhcCCCCcEE
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-HPYTKIMKEFYHKSDNKPKVF 204 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im~~~~~~~~~~p~iL 204 (1604)
|-.- .. .+..-.+.=.-.||-+.|+...... -.+++++.||+||||.-.-. .-.-.++++..... +.-+++
T Consensus 124 GysI-rf-----EdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~v 195 (699)
T KOG0925|consen 124 GYSI-RF-----EDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLV 195 (699)
T ss_pred cccc-cc-----cccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEE
Confidence 5321 10 0000001111234555554433322 24678999999999986421 12333445444333 357899
Q ss_pred EEeccCC
Q 000379 205 GMTASPV 211 (1604)
Q Consensus 205 gLTATP~ 211 (1604)
-||||..
T Consensus 196 vmSatl~ 202 (699)
T KOG0925|consen 196 VMSATLD 202 (699)
T ss_pred Eeecccc
Confidence 9999954
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=114.92 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 41 SINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
...++||+.|.++++.+. ++++|+.+|||+|||+.+++++...+.......++.++++.++|..+..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 356789999999887764 478999999999999999998755443111110123699999999998887777765
Q ss_pred h
Q 000379 116 H 116 (1604)
Q Consensus 116 ~ 116 (1604)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=114.92 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 41 SINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
...++||+.|.++++.+. ++++|+.+|||+|||+.+++++...+.......++.++++.++|..+..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 356789999999887764 478999999999999999998755443111110123699999999998887777765
Q ss_pred h
Q 000379 116 H 116 (1604)
Q Consensus 116 ~ 116 (1604)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
|
|
| >PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-10 Score=111.63 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=61.6
Q ss_pred CHHHHHHHHccCCCCC--CCchH----------------HHHHHhcccChHHHHHHHHHHHcCC---------CCCCCCC
Q 000379 1267 VKFLLQEAITHASVQE--FYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFP---------KPGETTD 1319 (1604)
Q Consensus 1267 ~~~LL~~AlTH~S~~~--~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~ 1319 (1604)
|+.||.+||||+||.. ..+|| +||+..+. +++.++..+.-+++-. ...+.-.
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 6899999999999975 67888 77888555 6777776654444310 0000000
Q ss_pred ------CCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhcc
Q 000379 1320 ------SGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSP 1362 (1604)
Q Consensus 1320 ------~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~ 1362 (1604)
.......+|+++|+|||++||||+|+|+ +.+.+|+...+-|
T Consensus 80 ~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~--~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 80 WGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGF--EAARKFIQKLILP 126 (128)
T ss_dssp --HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH--
T ss_pred hCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCH--HHHHHHHHHHhcc
Confidence 0123456889999999999999999999 8888888876654
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-06 Score=111.66 Aligned_cols=126 Identities=19% Similarity=0.093 Sum_probs=87.7
Q ss_pred CCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH---HHHHHHhhcCC
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ---QYDVIRVHTDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q---~~~~i~~~~~~ 119 (1604)
.+.|++.|.-.- .++.+.-|+-|.||-|||++|.+++.-..- .++.|-+++++--|+.. |...+.+++|+
T Consensus 83 G~r~ydVQliGg-l~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 83 GMRHFDVQLIGG-MVLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred CCCcchhHHHhh-hhhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 344455554332 234678899999999999999987654322 33448888999999985 55555668899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-----HHHHHh--cCcCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-----LDALRK--AFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-----l~~l~~--~~~~l~~i~llI~DEaH~~~ 181 (1604)
.|+.+.+++.... ++..=.+||+.+|...| .+.+.. +......+++.|+||++.+.
T Consensus 156 tvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEE------RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHH------HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999887664432 22233789999999877 444332 22345678999999999986
|
|
| >PHA03103 double-strand RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.9e-08 Score=100.33 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCCchHHHHHHHHhcCCcceeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1370 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.+||++.||||||+.+....+.....|+. +.|++.|.++|. ..++|.|.|||+|++.||+.||..|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~-~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGI-KFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 36999999999999887654444556765 889999999996 888999999999999999999999976
|
|
| >smart00535 RIBOc Ribonuclease III family | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-08 Score=103.51 Aligned_cols=94 Identities=27% Similarity=0.362 Sum_probs=69.6
Q ss_pred HHHHHHHccCCCCCC-CchH----------------HHHHHhcccChHHHHHHHHHHHcCCCC---------------CC
Q 000379 1269 FLLQEAITHASVQEF-YCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKP---------------GE 1316 (1604)
Q Consensus 1269 ~LL~~AlTH~S~~~~-~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~ 1316 (1604)
.||.+||||+|+... .+|| +++..+|..+++.++.++..+.+-... ..
T Consensus 1 ~ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~ 80 (129)
T smart00535 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGR 80 (129)
T ss_pred CHHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCc
Confidence 379999999999874 4888 788899999888887666555541000 00
Q ss_pred CCCCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhcccc
Q 000379 1317 TTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIV 1364 (1604)
Q Consensus 1317 ~~~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i 1364 (1604)
..........+|+++|+|||+|||||+|+|+ +.+++++..++.|.+
T Consensus 81 ~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~--~~~~~~i~~~~~~~~ 126 (129)
T smart00535 81 GEAISGGRDKPSILADVFEALIGAIYLDSGL--EAAREFIRDLLGPRL 126 (129)
T ss_pred hHhhcCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHh
Confidence 0000112357899999999999999999986 899999998888765
|
|
| >PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-08 Score=99.46 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHhcCCcceeee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1371 LPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.|||+.||||||+.+....+.. ...|+. +.|++.|.++|. ..+.|.|.|||+|+++||+.||+.|..
T Consensus 108 ~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~-~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 108 LNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGK-VVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCE-EEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 6999999999999887665433 345665 899999999997 889999999999999999999999976
|
|
| >PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=83.50 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=53.9
Q ss_pred chHHHHHHHHhcCCcceee-eeeeCce---EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000379 1373 PLRELIELCDSLGYFVKEN-CTLKGEM---VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1373 p~~~L~e~~~~~~~~~~~~-~~~~g~~---~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
|++.|+|+|++.+..++++ ....|+. +.|.|.|+++|. .++.|.|.|||+||..||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGK-EYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCE-EEeEeccCCHHHHHHHHHHHHHHhC
Confidence 7899999999999888744 4344432 699999999996 7779999999999999999999986
|
It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A .... |
| >cd00593 RIBOc RIBOc | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-08 Score=102.65 Aligned_cols=96 Identities=24% Similarity=0.393 Sum_probs=71.7
Q ss_pred HHHHHHHccCCCCCC---CchH----------------HHHHHhcccChHHHHHHHHHHHcCCCC---------CC---C
Q 000379 1269 FLLQEAITHASVQEF---YCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFPKP---------GE---T 1317 (1604)
Q Consensus 1269 ~LL~~AlTH~S~~~~---~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~~~---------~~---~ 1317 (1604)
.||.+||||+|+... .+|| +|+..+|..+++.++.++..+.+-... .+ .
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 378999999999873 6888 778888888888888776666541000 00 0
Q ss_pred C---CCCCCCCCCchhhHHHHHHHhceeecCCCChHHHHHHHHhhhccccCC
Q 000379 1318 T---DSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTP 1366 (1604)
Q Consensus 1318 ~---~~~~~~~~~k~l~D~~Ea~iGAi~lD~g~~~~~~~~~~~~~l~~~i~~ 1366 (1604)
. ........+|+++|+|||+|||||+|+|. +.+++++..++.|.++.
T Consensus 81 ~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEEKSGGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHhhcCCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhh
Confidence 0 00113568999999999999999999998 88999999988877643
|
Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing. |
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-08 Score=114.41 Aligned_cols=100 Identities=23% Similarity=0.399 Sum_probs=80.7
Q ss_pred cccCcEEEeccCCceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeeccCCccccccccCCC
Q 000379 906 NLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDG 985 (1604)
Q Consensus 906 ~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~~~~~~ 985 (1604)
.+.|++|++.|||+.|.+++|+++.+|.|.|... ++..||.|||+++|++.|++.+||+|..++-.++.
T Consensus 283 ~~~glivLT~YNNktyriddvD~~~tP~stF~k~--dgeIs~veYyk~qYni~I~dl~QPlliS~~k~K~~--------- 351 (845)
T KOG1042|consen 283 NVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKD--DGEISFVEYYKKQYNIEITDLNQPLLISEPKDKRP--------- 351 (845)
T ss_pred HhcceEEEEecCCceeeeeccccCcCccceeeec--CceeeHhHHHHHhcCeEEeeCCcceEeccCcccCC---------
Confidence 4679999999999999999999999999999864 45799999999999999999999999876544311
Q ss_pred CCCCCCCCCCCCCCCCCceeeeCcccceeecccHHHHHHHhhc
Q 000379 986 GGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKSLYLL 1028 (1604)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~ip~~~~~~~~~l 1028 (1604)
.+ ......+|+||||..+++...+-.-+.++
T Consensus 352 ~g------------~~~q~~~lIPELc~~TGLtd~mr~dF~~M 382 (845)
T KOG1042|consen 352 KG------------EPPQLAMLIPELCFLTGLTDEMRSDFQLM 382 (845)
T ss_pred CC------------CCccceeeehhhhhccCCcHHHHhhHHHH
Confidence 00 11233579999999999988776555433
|
|
| >smart00358 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=83.62 Aligned_cols=63 Identities=27% Similarity=0.319 Sum_probs=53.3
Q ss_pred chHHHHHHHHhcCCcceeeeee-eCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000379 1373 PLRELIELCDSLGYFVKENCTL-KGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1373 p~~~L~e~~~~~~~~~~~~~~~-~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
|++.|+|+|++.++.+.+.... .|+. +.|+|.|.++|. ..+.|.|.|||+||+.||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGE-YTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCE-EEEEeccCCHHHHHHHHHHHHHHhc
Confidence 7899999999999854444443 4543 689999999986 7789999999999999999999887
|
|
| >cd00048 DSRM Double-stranded RNA binding motif | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-07 Score=82.74 Aligned_cols=64 Identities=28% Similarity=0.321 Sum_probs=53.5
Q ss_pred CchHHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHh
Q 000379 1372 PPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
||++.|+|+|++++...+ +.. ...|+. ..|+|.|.++|. ..+.|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~-~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGK-ITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHhC
Confidence 699999999999865544 444 345554 789999999995 8899999999999999999999875
|
Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-05 Score=102.78 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCC-
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~- 474 (1604)
..|..++++-+.... ..+..+||-+.+....+.|.++|.. .++....+.... ..++ .+++. +.|.
T Consensus 611 ~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~----~gI~H~VLNAK~------h~~E-AeIVA--~AG~~ 676 (1112)
T PRK12901 611 REKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKM----RKIPHNVLNAKL------HQKE-AEIVA--EAGQP 676 (1112)
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHH----cCCcHHHhhccc------hhhH-HHHHH--hcCCC
Confidence 477877777665543 3456799999999999999999988 355555555541 1111 23333 3443
Q ss_pred ceEEEEccccccccCCC--------CccEEEEcCCCCCHHHHHHHhhhhcccCc
Q 000379 475 VNLLFATDVIEEGMHVP--------NCSYVIRFDLPKTVSSYIQSRGRARQHNS 520 (1604)
Q Consensus 475 ~~iLIaT~vleeGIDip--------~~nlVI~fD~p~s~~syiQr~GRA~R~gs 520 (1604)
-.|-|||+++++|-||. +==+||--..+.|.+---|-+|||||.|.
T Consensus 677 GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGD 730 (1112)
T PRK12901 677 GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGD 730 (1112)
T ss_pred CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCC
Confidence 46899999999999997 22368888899999999999999999994
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-05 Score=98.82 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=83.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~ 141 (1604)
.+|-+|+|||||...+-.+++.+. .+..+++++..+++|+.+.++.++..---....+....+.. . .
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i-~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------I-D 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------c-c
Confidence 478899999999877666665442 35667999999999999999999754211111222211100 0 0
Q ss_pred cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHH-------HHHhhcCCCCcEEEEeccCC
Q 000379 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMK-------EFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 142 ~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~-------~~~~~~~~~p~iLgLTATP~ 211 (1604)
...++-+++..+.|..... -.+.++++||+||+-...+. -|..-|+ .+.+.....++++.|-|+..
T Consensus 119 ~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 0135666777676644432 13567899999999777643 3333333 22233457799999999854
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=109.28 Aligned_cols=141 Identities=23% Similarity=0.265 Sum_probs=84.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH-----hhc-----C--CcEEEEECCC
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-----VHT-----D--FEVEEYYGAK 128 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~-----~~~-----~--~~v~~~~G~~ 128 (1604)
|+.+.|+||||||++++..|.++.. ..+..+++|+||+++..+...+.+. .++ + +....+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~----~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQ----KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH----HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 6789999999999999999988865 3345679999999999888776665 232 1 2333333322
Q ss_pred CCC----cc--chhHHHHh----cCCCcEEEEcHHHHHHHHH----------hcC-cCccce----eEEEEeCcccccCC
Q 000379 129 GVD----EW--DSQCWQKE----INKNDVLVMTPQILLDALR----------KAF-LSLDIV----CFIVIDECHHATGN 183 (1604)
Q Consensus 129 ~~~----~~--~~~~w~~~----~~~~~ViV~T~q~Ll~~l~----------~~~-~~l~~i----~llI~DEaH~~~~~ 183 (1604)
... .. ....+-.. -...+|+|+|.|.|..... .+. ..++.+ -+||+||.||+.+.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 100 00 00011110 1146899999998854221 111 222222 28999999999652
Q ss_pred -ChHHHHHHHHHhhcCCCC-cEEEEeccCCC
Q 000379 184 -HPYTKIMKEFYHKSDNKP-KVFGMTASPVV 212 (1604)
Q Consensus 184 -~~~~~im~~~~~~~~~~p-~iLgLTATP~~ 212 (1604)
..+..| .. -.| -+|..|||-..
T Consensus 217 ~k~~~~i-~~------lnpl~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EA------LKPQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHH-Hh------cCcccEEEEeeecCC
Confidence 234333 22 234 46889999643
|
|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=87.13 Aligned_cols=65 Identities=31% Similarity=0.479 Sum_probs=53.7
Q ss_pred cccCcEEEeccC--CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEeecc
Q 000379 906 NLKDMVVLAIHT--GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQS 972 (1604)
Q Consensus 906 ~l~~~vV~~~~~--~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~ 972 (1604)
.+.++.|.+.|+ ++.|.|.++.+..++.. |+.. ++...||++||+++||+.+++++||+|.+...
T Consensus 32 ~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~-~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~~ 98 (115)
T cd02825 32 ELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHS-DGKEITFADYFKERYNLTLTDLNQPLLIVKFS 98 (115)
T ss_pred HcCCCEEEEecCCCceEEEEeeEECCCChhh-eecC-CCCEEEHHHHHHHHcCCcccCCCCCEEEecCc
Confidence 567888999987 57999999988666655 7633 34578999999999999999999999998743
|
PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain. |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=91.28 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=85.1
Q ss_pred CCCCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh---hcC
Q 000379 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---HTD 118 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~---~~~ 118 (1604)
..+.|++-|.-+.-.+.+ +-|+.+.||=|||+++.+++....- .++.|=|++.+..|+..-++.++. ++|
T Consensus 74 ~g~~p~~vQll~~l~L~~-G~laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHK-GRLAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp TS----HHHHHHHHHHHT-TSEEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcccHHHHhhhhhccc-ceeEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 356788888887755544 4599999999999999887644332 345588889999999876666554 679
Q ss_pred CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHH-HHHHhcC------cCccceeEEEEeCccccc
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL-DALRKAF------LSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 119 ~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll-~~l~~~~------~~l~~i~llI~DEaH~~~ 181 (1604)
+.++.+++++..+. +...-.++|+.+|...|. +.|+... .....+.++|+|||+.+.
T Consensus 147 lsv~~~~~~~~~~~------r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEE------RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHH------HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHH------HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999876432 111225789999998874 4444321 124578899999999886
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=89.16 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHhhccC--EEEEeCCCChHHHHHHHHHHHHHHH--HhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 46 PRIYQLKVFEVAKRRN--TIAVLETGAGKTMIAVMLIKDIAQA--IKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n--~Iv~~~TGsGKTliailli~~~~~~--~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
+.+.|.+++..++..+ ++|.+|.|||||.+...++..++.. ......++++++++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 5789999999999755 7899999999998777776666321 01244667799999999999999999887
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=101.52 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=56.3
Q ss_pred CCCCC-cHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 42 INFIP-RIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 42 ~~~~p-r~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
..+.+ ||.|.+.++.+. ++++++-+|||+|||++.+........ ..+...+++|.+.|..=..|..+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~---~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ---EKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH---hccccccEEEEcccchHHHHHHHHHHh
Confidence 45666 999999998775 488999999999999988876655433 122335799999999988999999987
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-06 Score=103.47 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=96.6
Q ss_pred CCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 44 FIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
-.+-+||.|.+.++. +-++|+++++|.|||..++..+..+.. ....+.-.|+++|.-..+. |-.++..+..
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~---~~~~~~P~Lv~ap~sT~~n-we~e~~~wap 369 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPK---EIHSPGPPLVVAPLSTIVN-WEREFELWAP 369 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeeccc---ccCCCCCceeeccCccccC-CCCchhccCC
Confidence 456799999998875 478999999999999987776655544 2222233688888755544 5556655543
Q ss_pred -CcEEEEECCCCCCc------cch-----------hHH-HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccc
Q 000379 119 -FEVEEYYGAKGVDE------WDS-----------QCW-QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHH 179 (1604)
Q Consensus 119 -~~v~~~~G~~~~~~------~~~-----------~~w-~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~ 179 (1604)
+.+..+.|....+. |.. ..| ....-..+|.+.+|+..... ...+..-++.++|.||+|+
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~--~~il~~v~w~~livde~~r 447 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID--QSILFSVQWGLLIVDEAHR 447 (696)
T ss_pred CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC--HHHHhhhhcceeEeechhh
Confidence 44444554322110 000 111 11223467777777765322 2233445789999999999
Q ss_pred ccCCCh-HHHHHHHHHhhcCCCCcEEEEeccCCCCC
Q 000379 180 ATGNHP-YTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 180 ~~~~~~-~~~im~~~~~~~~~~p~iLgLTATP~~~~ 214 (1604)
+..+.. ..+.+. ....-+.+.+|+||..++
T Consensus 448 lkn~~s~~f~~l~-----~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 448 LKNKQSKRFRVLT-----AYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred cccchhhhhhhcc-----ccccchhhhccCCcchhh
Confidence 976521 111111 123356789999998765
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=94.97 Aligned_cols=136 Identities=17% Similarity=0.214 Sum_probs=88.8
Q ss_pred eeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCcCCCccc-cCCCCCCCCCc
Q 000379 1393 TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGASNTGKLGDDCR-QTTKEDLPEPP 1469 (1604)
Q Consensus 1393 ~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1469 (1604)
.+.|+. +.|.+.|.++|..+. +|.|+.+||+.|++.+.+.... .+..... +.+++..++..
T Consensus 16 ~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 79 (542)
T KOG2777|consen 16 SQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEA---------HLSMGGTEGVNEDLTSDQA 79 (542)
T ss_pred cccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCc---------ccccCCCCccccccchhhh
Confidence 345554 678899999987433 9999999999999999873111 0000000 00000000000
Q ss_pred ccccccCccccccCCCcccccccccCCCccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccc
Q 000379 1470 SCKRQKGTEAAIPAGDSCKKAYCMTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRT 1549 (1604)
Q Consensus 1470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~ 1549 (1604)
+ +. ... -....||.+.|+|+.+ -|.|.++.+ .||.|+
T Consensus 80 -------------------~---~~-----~~~-~~~~~npv~ll~e~~~-----~~~~~~~~~---------~~~~~~- 116 (542)
T KOG2777|consen 80 -------------------D---AF-----LSL-GKEGKNPVSLLHELAN-----GLFFDFVNE---------SGPQHA- 116 (542)
T ss_pred -------------------H---HH-----Hhh-hhccCCchHHHHHHhc-----ccceeeecc---------CCCCCC-
Confidence 0 00 000 0014788999999997 678999988 899999
Q ss_pred cceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHHHH
Q 000379 1550 GFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHELER 1595 (1604)
Q Consensus 1550 ~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l~~ 1595 (1604)
+.|+|.|+|. |. .+.|. +.|||.||+.||..||+.|..
T Consensus 117 --~~F~~~~~vd----g~-~~~~~-~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 117 --PKFVMSVVVD----GR-WFEGG-GRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred --ceEEEEEEEC----CE-EccCC-CcchHHHHHHHHHHHHHHHHh
Confidence 8999999983 32 24455 477999999999999998854
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=82.13 Aligned_cols=156 Identities=19% Similarity=0.107 Sum_probs=94.1
Q ss_pred CCCCcHHHHHHHHHhh-----------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK-----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-----------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.-.+..-|.|++-.+- +...++.+.||.||..+...+|.+-.. ++. ++.|++..+..|.....+
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l----~Gr-~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL----RGR-KRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH----cCC-CceEEEECChhhhhHHHH
Confidence 3456889999887662 356789999999999877666665433 233 346777777789887777
Q ss_pred HHHhhcC--CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhc---CcCc--------cce-eEEEEeCc
Q 000379 112 VIRVHTD--FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKA---FLSL--------DIV-CFIVIDEC 177 (1604)
Q Consensus 112 ~i~~~~~--~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~---~~~l--------~~i-~llI~DEa 177 (1604)
.++..-. +.+..+.. |... ...--...|+++||..|...-..+ .-.+ .++ .+||||||
T Consensus 110 Dl~DIG~~~i~v~~l~~------~~~~--~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEc 181 (303)
T PF13872_consen 110 DLRDIGADNIPVHPLNK------FKYG--DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDEC 181 (303)
T ss_pred HHHHhCCCcccceechh------hccC--cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccc
Confidence 7775432 22222211 1000 001124579999999997764321 1111 122 49999999
Q ss_pred ccccCCCh-------HHHHHHHHHhhcCCCCcEEEEeccCCC
Q 000379 178 HHATGNHP-------YTKIMKEFYHKSDNKPKVFGMTASPVV 212 (1604)
Q Consensus 178 H~~~~~~~-------~~~im~~~~~~~~~~p~iLgLTATP~~ 212 (1604)
|++.+... ......++- ..-+..|++-+|||...
T Consensus 182 H~akn~~~~~~~~sk~g~avl~LQ-~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 182 HKAKNLSSGSKKPSKTGIAVLELQ-NRLPNARVVYASATGAS 222 (303)
T ss_pred hhcCCCCccCccccHHHHHHHHHH-HhCCCCcEEEecccccC
Confidence 99976532 111222221 22245689999999653
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.1e-05 Score=101.19 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=99.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH--------HHhh----CCCCeEEEEEecChhhHHHHHHHHHhhcC--CcEEEEE
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ--------AIKS----NGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FEVEEYY 125 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~--------~~~~----~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~--~~v~~~~ 125 (1604)
+.++++...|.|||..-+.+...... .... ...-+.+|||||. ++..||..+|..+++ ++|..|.
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEEe
Confidence 55788899999999976665433211 0001 1123458999998 888999999999984 4677776
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCc--------------C----ccce--eEEEEeCcccccCCCh
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--------------S----LDIV--CFIVIDECHHATGNHP 185 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~--------------~----l~~i--~llI~DEaH~~~~~~~ 185 (1604)
|-.. ..|... ..+.++||||+||.+|.+.+.|... . +-++ =-|++|||+..-....
T Consensus 454 Girk-~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 454 GIRK-TFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred chhh-hcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 6433 334433 4566899999999999988876511 1 1111 1389999999987766
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeccCCCC
Q 000379 186 YTKIMKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 186 ~~~im~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
+..-|...+ .+-...+.|+||+.+
T Consensus 530 ~~a~M~~rL----~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRL----HAINRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHh----hhhceeeecCCchhh
Confidence 766666443 345779999999965
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.7e-05 Score=94.17 Aligned_cols=209 Identities=16% Similarity=0.122 Sum_probs=137.6
Q ss_pred CchHHHHHHHHhcCCcceeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhcccCCC-
Q 000379 1372 PPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRISKGAS- 1448 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~- 1448 (1604)
+-+.-|..||.+..+.+.+.+...|+. ..|.|.|.+.+....+.|...+||+|..+||+..++.|-..++..+...+
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 457789999999999877777777765 67899999999889999999999999999999999999775333111111
Q ss_pred -CCCcC------------CCccccCCCCCCCCCcccccccCcc-ccccCCCccc-----------------ccccccCCC
Q 000379 1449 -NTGKL------------GDDCRQTTKEDLPEPPSCKRQKGTE-AAIPAGDSCK-----------------KAYCMTVGT 1497 (1604)
Q Consensus 1449 -~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~ 1497 (1604)
..... ...|.+..-...+.. ++..+ ...+|..... .+..+..+.
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~-----~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~ 156 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQES-----QQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDL 156 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCC-----CCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhcc
Confidence 00000 112221111000000 00000 0011110000 011222344
Q ss_pred ccccccccccCCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCC-ceEEEeCCCCC
Q 000379 1498 PVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECNGDPRA 1576 (1604)
Q Consensus 1498 ~~~~~~~~~~~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~-~~~~~~g~~~s 1576 (1604)
.+.-+.+|...|.|..|+++-|+..... .|+.+. .||.|. ++|+.+..+.++.. ...+..+ +++
T Consensus 157 ~~~ihg~wt~eN~K~~ln~~~q~~~~~~-~y~~~~----------~g~~~~---~s~~~e~si~v~~~~~~~~~~~-~gs 221 (1282)
T KOG0921|consen 157 NAEIHGNWTMENAKKALNEYLQKMRIQD-NYKYTI----------VGPEHV---RSFEAEASIYVPQLNRNLVAKE-TGS 221 (1282)
T ss_pred CccccCCCCcchhHHHHhHHHhhhhhcc-ccceee----------cCCccc---cchhhhHHHhhhhhchhhhhhh-ccc
Confidence 5556677888999999999999999855 888777 499999 89998888887753 3333333 448
Q ss_pred CccchhhhHHHHHHHHHHHcCeee
Q 000379 1577 DKKSSFDSAALIMLHELERQGKII 1600 (1604)
Q Consensus 1577 sKK~A~~~AA~~~l~~l~~~~~~~ 1600 (1604)
+||.|..+.|...+++|-+.++.+
T Consensus 222 nkk~~~~~ca~s~vrqm~hl~~~~ 245 (1282)
T KOG0921|consen 222 NKKVAEASCALSLVRQLFHLNVME 245 (1282)
T ss_pred cceecCcchHHHHHHHHHHHhhhh
Confidence 899999999999999998876653
|
|
| >KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00045 Score=75.84 Aligned_cols=71 Identities=21% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCchhhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHH
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~k~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~ 1587 (1604)
.+|...|-++|++++...|++.++.+ +|---+ .+-|+ |-+. .+....+.|.| +|-|.|++.||.
T Consensus 232 ~~P~~~L~~lckr~~l~epe~Rll~e---------sGr~S~--~Pvyv--VgiY--s~kkllGqG~G-esl~~A~e~AA~ 295 (333)
T KOG3769|consen 232 QWPRRLLSRLCKRRGLKEPESRLLAE---------SGRNSA--EPVYV--VGIY--SGKKLLGQGQG-ESLKLAEEQAAR 295 (333)
T ss_pred cchHHHHHHHHHHcCCCCchhHHHHH---------hccCcc--CceEE--EEee--cCchhhccCcc-hHHHHHHHHHHH
Confidence 55679999999999999999999988 665332 15566 4433 23455666766 779999999999
Q ss_pred HHHHHHH
Q 000379 1588 IMLHELE 1594 (1604)
Q Consensus 1588 ~~l~~l~ 1594 (1604)
.||..+.
T Consensus 296 dAL~k~y 302 (333)
T KOG3769|consen 296 DALIKLY 302 (333)
T ss_pred HHHHHHH
Confidence 9999875
|
|
| >PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00016 Score=66.17 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCchHHHHHHHHhcCCcce-eee-eeeCce--EEEEEEEEEcCeEEE---------EEEEeCCHHHHHHHHHHHHHHHhh
Q 000379 1371 LPPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLV---------GEGQERSRKAAKGKAASQLLKKLE 1437 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~v~v~v~g~~~~---------~~g~g~skk~Ak~~AA~~AL~~L~ 1437 (1604)
+||++.|+|+|+++++..| +.+ ...|+. ..|.+.|.|.+...- +.--..++++||..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5899999999999999988 333 345765 689999999885431 123346799999999999999873
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.033 Score=67.56 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=87.0
Q ss_pred CCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEccccc--cccC
Q 000379 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIE--EGMH 489 (1604)
Q Consensus 412 ~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~vle--eGID 489 (1604)
....++|||+.+-..--.|.++|++ .++....++-- .+.++-..+-..|.+|+.++|+-|--+- +=..
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~----~~~sF~~i~EY------ts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK----ENISFVQISEY------TSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh----cCCeEEEeccc------CCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 3445899999998888888899886 46666666654 4677778888999999999999996543 3456
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhhcccCc--------eEEEEEeccCHHHHHHHHHHHHH
Q 000379 490 VPNCSYVIRFDLPKTVSSYIQSRGRARQHNS--------QFILMLERGNLKQRNKLFDIIRS 543 (1604)
Q Consensus 490 ip~~nlVI~fD~p~s~~syiQr~GRA~R~gs--------~~i~~v~~~~~~~~~~l~~~~~~ 543 (1604)
|.++..||.|.+|..+.-|-...+-.....+ .+.+++++=+. -+|+++...
T Consensus 368 irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~---~~LErIVGt 426 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA---LRLERIVGT 426 (442)
T ss_pred ecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH---HHHHHHhCH
Confidence 7889999999999999888776655444332 46667664433 345554433
|
; GO: 0005634 nucleus |
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00023 Score=70.99 Aligned_cols=65 Identities=28% Similarity=0.489 Sum_probs=53.1
Q ss_pred cccCcEEEeccC---CceEEEEEecCCCCCCCCCCCCCCCCCchHHHHHhhhccccccCCCCceEEee
Q 000379 906 NLKDMVVLAIHT---GRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLK 970 (1604)
Q Consensus 906 ~l~~~vV~~~~~---~~~Y~v~~i~~d~~p~spf~~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~ 970 (1604)
.+++.-|.+.|. ++.|.|.++..+..+...|+....+...|+++||+++|++.+..|++|+|.+.
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g 98 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVG 98 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeC
Confidence 456788888886 68999999988877777887531124789999999999999999999999874
|
Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. |
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=84.27 Aligned_cols=68 Identities=18% Similarity=-0.012 Sum_probs=54.5
Q ss_pred CCCchHHHHHHHHhcCCcceee--eeeeCceEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1370 ELPPLRELIELCDSLGYFVKEN--CTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~--~~~~g~~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.+.-+..|+||+|+.....+.+ ...+.....|...|.+|+- ..|+|.|.|||.||..||+.+|++|.-
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~-~yGsG~g~sKK~Ak~~AAR~tLeiLIP 443 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLF-PYGSGVGASKKTAKLVAARDTLEILIP 443 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhccCCCCccccccccccc-ccccccccchHHHHHHHHHHHHHHhcc
Confidence 3567889999999877766633 2233444668888999985 889999999999999999999999853
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0007 Score=74.26 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=87.8
Q ss_pred CCCCCcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 42 INFIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
.++..|+-|.++...+.. .|.+..+-+|.|||-+.+=++..++. .+.+.+.++||. +|..|....+++.+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-----dg~~LvrviVpk-~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALA-----DGSRLVRVIVPK-ALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHc-----CCCcEEEEEcCH-HHHHHHHHHHHHHH
Confidence 467889999999988864 79999999999999876654444443 345678888896 99999999998865
Q ss_pred C----CcEEEEEC--CCCCCccchhHH----HHhcCCCcEEEEcHHHHHHHHHhc-------Cc-----------Cccce
Q 000379 118 D----FEVEEYYG--AKGVDEWDSQCW----QKEINKNDVLVMTPQILLDALRKA-------FL-----------SLDIV 169 (1604)
Q Consensus 118 ~----~~v~~~~G--~~~~~~~~~~~w----~~~~~~~~ViV~T~q~Ll~~l~~~-------~~-----------~l~~i 169 (1604)
+ -++..+-= +...+....+.. ........|+++||+.++...-.+ .. .++.-
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 3 23333222 222222111112 233456789999999886543221 10 12233
Q ss_pred eEEEEeCcccccC
Q 000379 170 CFIVIDECHHATG 182 (1604)
Q Consensus 170 ~llI~DEaH~~~~ 182 (1604)
.-=|+||||....
T Consensus 174 ~rdilDEsDe~L~ 186 (229)
T PF12340_consen 174 SRDILDESDEILS 186 (229)
T ss_pred CCeEeECchhccC
Confidence 4568999988754
|
There are two conserved sequence motifs: LLE and NMG. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00083 Score=86.86 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 44 FIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
..+.+.|.+++..++. ..++|.+|+|||||.+.+.++.++.. .+.+|++++||..-|++..+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4679999999999985 57889999999999998888887765 2346999999999999998888753
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00013 Score=92.35 Aligned_cols=113 Identities=25% Similarity=0.293 Sum_probs=87.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc---CCcEEEEECCCCCCccchh
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---DFEVEEYYGAKGVDEWDSQ 136 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~ 136 (1604)
.|.++.+|||+|||..|-+.+...+. ..++.++++++|-++|+..-.+...... |++++...|+...+.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~----~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~---- 1015 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALS----YYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDV---- 1015 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhc----cCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCCh----
Confidence 77899999999999999998877654 4566789999999999876555554432 788999988876552
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHH--hcCcCccceeEEEEeCcccccCC
Q 000379 137 CWQKEINKNDVLVMTPQILLDALR--KAFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 137 ~w~~~~~~~~ViV~T~q~Ll~~l~--~~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
......+++|+||+......+ ...--+.+++++|+||.|.+...
T Consensus 1016 ---~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 ---KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ---hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 345578999999998866655 22334578899999999998754
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00067 Score=73.95 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 47 RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
...|..+++.+++ ..+++.+|.|||||+.|+....+++. .+...+++++-|.++.
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~----~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVK----EGEYDKIIITRPPVEA 61 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHH----TTS-SEEEEEE-S--T
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHH----hCCCcEEEEEecCCCC
Confidence 5789999999986 44678899999999999998888776 3566778999898764
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.013 Score=75.25 Aligned_cols=126 Identities=18% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHh-hccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHH---HHHHHHHhhcCC
Q 000379 44 FIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH---QQYDVIRVHTDF 119 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~-l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~---Q~~~~i~~~~~~ 119 (1604)
+..|+|=.+.+-.+ ++.+.|+-|-||=|||++|.+++.--.- .++.+-++.-.--|+. .|...+-.++|+
T Consensus 77 lg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred cCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 34556656666544 4688899999999999999997643211 2333666666667765 455556668899
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHH-HHHHH----h--cCcCccceeEEEEeCccccc
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALR----K--AFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~L-l~~l~----~--~~~~l~~i~llI~DEaH~~~ 181 (1604)
.|+....++..+.. ...=.+||..+|...| .+.++ . .-......++.|+||++-+.
T Consensus 151 svG~~~~~m~~~ek------~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 151 SVGVILAGMSPEEK------RAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ceeeccCCCChHHH------HHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99999988865531 1122589999998766 12221 1 11122346777888877653
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0004 Score=84.09 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=65.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
-++|.+..|||||++|+.++..+.. ...+..++++++..+|.....+.+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~----~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~-------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQN----SEEGKKVLYLCGNHPLRNKLREQLAKKY-------NP-------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhc----cccCCceEEEEecchHHHHHHHHHhhhc-------cc--------------
Confidence 4678899999999999999888721 2345668999999999988887776543 00
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
......+..+..+.+.+.........+++|||||||++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0122334445555444432334567789999999999965
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00071 Score=81.75 Aligned_cols=132 Identities=21% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCCCCCcHHHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
+.--++..-|..|++.++.+- .||.+|.|+|||.+...++.++.+ . ....||+.+|+..-|+|.++.|++ +|+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~----~-~~~~VLvcApSNiAVDqLaeKIh~-tgL 479 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLAR----Q-HAGPVLVCAPSNIAVDQLAEKIHK-TGL 479 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHH----h-cCCceEEEcccchhHHHHHHHHHh-cCc
Confidence 334467889999999999755 699999999999999888888876 2 334499999999999999999985 456
Q ss_pred cEEEEECCCC--------------------------------------C-Cc-----cchhHHHHhcCCCcEEEEcHHHH
Q 000379 120 EVEEYYGAKG--------------------------------------V-DE-----WDSQCWQKEINKNDVLVMTPQIL 155 (1604)
Q Consensus 120 ~v~~~~G~~~--------------------------------------~-~~-----~~~~~w~~~~~~~~ViV~T~q~L 155 (1604)
+|.-++.-.. . |. -......+.+..++||.||--.-
T Consensus 480 KVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A 559 (935)
T KOG1802|consen 480 KVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA 559 (935)
T ss_pred eEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc
Confidence 6655432110 0 00 00111235567889999995322
Q ss_pred HHHHHhcCcCccceeEEEEeCcccccC
Q 000379 156 LDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 156 l~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
-+. .++-.++..|++||+-....
T Consensus 560 gd~----rl~~~kfr~VLiDEaTQatE 582 (935)
T KOG1802|consen 560 GDR----RLSKFKFRTVLIDEATQATE 582 (935)
T ss_pred cch----hhccccccEEEEecccccCC
Confidence 111 22334678999999987754
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=80.34 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCCCCCcHHHHHHHHHhhcc-C-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKRR-N-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~~-n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
......+.+-|..++..+... + .++.+|+|+|||.+-+.+|..+.. .+++||+.+||..-|+...+.+
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------~~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------QKKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------cCCeEEEEcCchHHHHHHHHHh
Confidence 344567788999999988753 4 589999999999999999888876 5577999999999998888854
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=71.82 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHhhc--cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 45 IPRIYQLKVFEVAKR--RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
++.+-|.+++..++. .+ ++|.++.|+|||.+...+...+.. .+.++++++||...+. ++++.++..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~------~g~~v~~~apT~~Aa~----~L~~~~~~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA------AGKRVIGLAPTNKAAK----ELREKTGIE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH------TT--EEEEESSHHHHH----HHHHHHTS-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh------CCCeEEEECCcHHHHH----HHHHhhCcc
Confidence 367889999999974 33 567899999999865554443332 3467999999965544 455444433
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=81.17 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=90.7
Q ss_pred HHHHHHHHhhccC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECC
Q 000379 49 YQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127 (1604)
Q Consensus 49 yQ~e~l~~~l~~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 127 (1604)
|-.++++.....+ +||-..||+|||......|++-+.+. ..+.-.-+++--|++..+.-.++.+.+.-+-.++..+|-
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n-s~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN-SNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhc-cccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 3344444444433 67889999999987766555543211 222334466677887776666666655433333333332
Q ss_pred CCCCccchhHHHHhc--CCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEE
Q 000379 128 KGVDEWDSQCWQKEI--NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFG 205 (1604)
Q Consensus 128 ~~~~~~~~~~w~~~~--~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLg 205 (1604)
. +. ++... ..--|+.||-+.++.++..+. ..+.++|+||.|..--+..+..++..=.......-+++.
T Consensus 461 ~-vR------f~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 461 N-VR------FDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred c-cc------ccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 1 10 11111 134689999999999988774 467799999999986555555443322222234467888
Q ss_pred EeccCC
Q 000379 206 MTASPV 211 (1604)
Q Consensus 206 LTATP~ 211 (1604)
|+||..
T Consensus 531 msatId 536 (1282)
T KOG0921|consen 531 MSATID 536 (1282)
T ss_pred hhcccc
Confidence 999853
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=66.55 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=63.6
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.++|.+++|+|||..+-.++..+............+.+-+|...-.......+...++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 4578999999999999888887765433222344555666665443445555555444322110
Q ss_pred HhcCCCcEEEEcHH----HHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 140 KEINKNDVLVMTPQ----ILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q----~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
-.+.. .+.+.+.+.. ..+||+||+|++. . ...+..+........--+.++++|.
T Consensus 69 ---------~~~~~~l~~~~~~~l~~~~-----~~~lviDe~~~l~-~---~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---------RQTSDELRSLLIDALDRRR-----VVLLVIDEADHLF-S---DEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ---------TS-HHHHHHHHHHHHHHCT-----EEEEEEETTHHHH-T---HHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ---------cCCHHHHHHHHHHHHHhcC-----CeEEEEeChHhcC-C---HHHHHHHHHHHhCCCCeEEEEEChh
Confidence 01222 2333333322 2799999999984 2 3333333222333334478888873
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0019 Score=58.70 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=43.1
Q ss_pred HHHHhhc-cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 53 VFEVAKR-RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 53 ~l~~~l~-~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
++..++. .+ ++|.+|.|||||..++-.+.++.... ... ++++++++|++..+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443333 44 45699999999998888888877411 122 667999999999988877776
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=80.69 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=55.7
Q ss_pred HHhCCCceEEEEccccccccCCCCccEEEEcCCCCCHHHHHHHhhhhcccC-----c----------eEEEEEeccCHHH
Q 000379 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-----S----------QFILMLERGNLKQ 533 (1604)
Q Consensus 469 ~Fr~g~~~iLIaT~vleeGIDip~~nlVI~fD~p~s~~syiQr~GRA~R~g-----s----------~~i~~v~~~~~~~ 533 (1604)
.|.+ ..+.|++-.++-||.|=|++=.++-.....|..+=.|-+||.-|-- . ...+|+......-
T Consensus 479 SFd~-plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~F 557 (985)
T COG3587 479 SFDE-PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDF 557 (985)
T ss_pred ccCC-cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHH
Confidence 3544 3789999999999999999999999999999999999999997752 1 1344555444444
Q ss_pred HHHHHHHHHHH
Q 000379 534 RNKLFDIIRSE 544 (1604)
Q Consensus 534 ~~~l~~~~~~e 544 (1604)
...|.+.+.++
T Consensus 558 v~~LqkEI~~~ 568 (985)
T COG3587 558 VKALQKEINDE 568 (985)
T ss_pred HHHHHHHHHHh
Confidence 45555555443
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0049 Score=77.77 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHH
Q 000379 37 SSTNSINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVM 78 (1604)
Q Consensus 37 ~~~~~~~~~pr~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliail 78 (1604)
..+....++|++-|...+..++ +.|+++-.|||+|||+.-+.
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 4455678899999999999886 38899999999999986544
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=66.77 Aligned_cols=80 Identities=25% Similarity=0.348 Sum_probs=55.9
Q ss_pred CcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCceEEEEcc--ccccccCCC
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATD--VIEEGMHVP 491 (1604)
Q Consensus 414 ~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~~iLIaT~--vleeGIDip 491 (1604)
...++||+++....+.+.+.++......++.+ +..+ .....++++.|++++--||+|+. .+.||||+|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---------SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---------cchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 36899999999999999888876321112211 1112 23568899999999999999998 999999999
Q ss_pred C--ccEEEEcCCCC
Q 000379 492 N--CSYVIRFDLPK 503 (1604)
Q Consensus 492 ~--~nlVI~fD~p~ 503 (1604)
+ |..||...+|.
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 88999888764
|
|
| >PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00047 Score=68.80 Aligned_cols=23 Identities=35% Similarity=0.787 Sum_probs=21.1
Q ss_pred CCCCchhhHHHHHHHhceeecCC
Q 000379 1324 MKAPKALGDLLESIVGAVLIDTK 1346 (1604)
Q Consensus 1324 ~~~~k~l~D~~Ea~iGAi~lD~g 1346 (1604)
...+|+++|+|||++||||+|+|
T Consensus 92 ~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 92 VLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHHHhcC
Confidence 44689999999999999999998
|
1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A .... |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.001 Score=79.72 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=68.0
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc----CCcEEEEECCCCCCccchhHHH
Q 000379 64 AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT----DFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 64 v~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~----~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
.-|.||||||++...+|.+... .+.+..+|.|+....++.....+-.-. =+.-.+.+++..+.-.....+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~-----kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK-----KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH-----hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 3589999999999999999876 244558888887666665444332211 0111222333322221111122
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhc---CcCcc---cee-EEEEeCccccc
Q 000379 140 KEINKNDVLVMTPQILLDALRKA---FLSLD---IVC-FIVIDECHHAT 181 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~---~~~l~---~i~-llI~DEaH~~~ 181 (1604)
.--....|.++|.|.|...+.+. .+.+. +.. +.+-|||||+-
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 22235789999999998887653 33333 334 45679999985
|
|
| >PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0015 Score=61.47 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=44.3
Q ss_pred hhhHHHHHHhCC-----CCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhH
Q 000379 1511 RTSLFQLCKTML-----WPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSA 1585 (1604)
Q Consensus 1511 k~~L~e~~~~~~-----~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~A 1585 (1604)
.+.|+.||++-- ...|.|++... . ..|+|+|.+=+. .+.-...|....|||.||++|
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~---------~--------~~~~c~v~LP~~-~pi~~i~g~~~~sk~~AK~sA 63 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKI---------G--------SGFICTVILPIN-SPIRSIEGPPMRSKKLAKRSA 63 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE-------------------G-EEEEEE--TT--SS--EEEE--SSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEc---------C--------CcEEEEEECCCC-CCCCeEEccccccHHHHHHHH
Confidence 378999998742 24577877664 1 257776655422 233346677888999999999
Q ss_pred HHHHHHHHHHcCee
Q 000379 1586 ALIMLHELERQGKI 1599 (1604)
Q Consensus 1586 A~~~l~~l~~~~~~ 1599 (1604)
|.+|...|.+.|.|
T Consensus 64 Af~Ac~~L~~~g~l 77 (90)
T PF03368_consen 64 AFEACKKLHEAGEL 77 (90)
T ss_dssp HHHHHHHHHHH-S-
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999976
|
This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0033 Score=71.84 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=28.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
+.|+++++|+|+|||..+..+..+... .+.+++|...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~------~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ------AGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH------CCCchhhhhH
Confidence 489999999999999999988777654 3344666433
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.04 Score=61.94 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=40.8
Q ss_pred CCC-cHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 44 FIP-RIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 44 ~~p-r~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
+.| ...|..++..+.+ ..+++.+++|||||+.++.+..+.+. .+.-.++++.=|+++.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~----~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALI----HKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh----cCCeeEEEEeCCCCCc
Confidence 444 5577777776664 66778899999999999998776553 1234556666677553
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.26 Score=59.20 Aligned_cols=133 Identities=13% Similarity=0.216 Sum_probs=85.8
Q ss_pred HHHHHHHH-HHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 397 TKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 397 ~K~~~L~~-lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
.++.-..+ |+-++......-|+|++++-..--.+...+++. .+....++-- -+..+-...-+-|-.|..
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e----~i~F~~i~EY------ssk~~vsRAR~lF~qgr~ 603 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE----EISFVMINEY------SSKSKVSRARELFFQGRK 603 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh----hcchHHHhhh------hhHhhhhHHHHHHHhcCc
Confidence 44554444 344554444456899999887777777777763 2222222221 122333345566889999
Q ss_pred eEEEEccccc--cccCCCCccEEEEcCCCCCHHH---HHHHhhhhcccC------ceEEEEEeccCHHHHHHHHHHHH
Q 000379 476 NLLFATDVIE--EGMHVPNCSYVIRFDLPKTVSS---YIQSRGRARQHN------SQFILMLERGNLKQRNKLFDIIR 542 (1604)
Q Consensus 476 ~iLIaT~vle--eGIDip~~nlVI~fD~p~s~~s---yiQr~GRA~R~g------s~~i~~v~~~~~~~~~~l~~~~~ 542 (1604)
++|+-|.-+- +--+|.++..||.|.+|.++.- ++-+.||+.-.| ..+.+|+.+-+. -.|+.+..
T Consensus 604 ~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~---i~Le~ivG 678 (698)
T KOG2340|consen 604 SVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR---IRLENIVG 678 (698)
T ss_pred eEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh---HHHHHhhh
Confidence 9999987654 5578999999999999998754 467888887766 457777775433 34444443
|
|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0031 Score=84.62 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=65.9
Q ss_pred ccccCcEEEeccCCceEEEEEecCCCCCCCCCCCCC--------CCCCchHHHHHhhhccccccCC-CCceEEeeccCCc
Q 000379 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNT--------DDDSKTFVNYFSEKYGIVLIHP-GQPLLRLKQSHNP 975 (1604)
Q Consensus 905 ~~l~~~vV~~~~~~~~Y~v~~i~~d~~p~spf~~~~--------~~~~~ty~~yy~~k~~~~i~~~-~QPlL~~~~~~~~ 975 (1604)
+.+++..|.+.|+++.|.|.+|.++.++...|.... .+...|+.|||+++|++.|.++ ++|++.+..-
T Consensus 293 ~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~--- 369 (900)
T PLN03202 293 RMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKP--- 369 (900)
T ss_pred HHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCC---
Confidence 457889999999999999999999999988886321 1237899999999999999986 8888863210
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCceeeeCcccceeecc
Q 000379 976 HNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDV 1017 (1604)
Q Consensus 976 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pel~~~~~i 1017 (1604)
...++||||+|.+.+.
T Consensus 370 --------------------------~~~~ylP~ElC~i~~~ 385 (900)
T PLN03202 370 --------------------------KRPTYFPIELCSLVSL 385 (900)
T ss_pred --------------------------CCCeEEcceeeEccCC
Confidence 0124799999999874
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.02 Score=73.27 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcc-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 48 IYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 48 ~yQ~e~l~~~l~~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
++|++++..++.+ -++|.++.|||||.+...++..+..... ...+.++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~-~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSP-KQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc-ccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 7999999999875 4689999999999987776655543111 11134699999997666655555543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=73.75 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhhcc-CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKRR-NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 47 r~yQ~e~l~~~l~~-n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
-++|++++..++.. -++|.+++|||||.+...++..+.+. ...+..++++.+||.--+....+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~--~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQL--ADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 47999999999875 56899999999999877666655431 11234568999999666555555444
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.045 Score=62.96 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=37.8
Q ss_pred cHHHHHHHHHh-----hccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH
Q 000379 47 RIYQLKVFEVA-----KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 47 r~yQ~e~l~~~-----l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
..-|..++..+ .++|+++++|+|+|||+.+..+..++.+ .+..++|+. ...|+.+.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~------~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE------NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH------cCCceeeee-HHHHHHHH
Confidence 45666666433 2488999999999999999888777665 234455554 34565544
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.033 Score=73.49 Aligned_cols=62 Identities=21% Similarity=0.113 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHH
Q 000379 42 INFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~ 107 (1604)
..+.+.+-|.+++..+.. +-++|.++.|||||.+.-.++..+.. .++...+++++||-.-+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~----~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE----LGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH----cCCCceEEEEeCchHHHH
Confidence 356789999999999975 55789999999999977655543322 222256888999955544
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.018 Score=68.33 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 47 RIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 47 r~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+|-|.+-+..++ ++++++-||+|+|||..-+.++.... ........+.++-.-|++=++....+++
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq--~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQ--LHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHH--HhCCcccceEEEecCcchHHHHHHHHHH
Confidence 556666555443 48899999999999987666554321 1122244456666666655555444444
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.038 Score=63.64 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=82.4
Q ss_pred CCCCCCcH-HHHHHHHHhhccC---EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 41 SINFIPRI-YQLKVFEVAKRRN---TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 41 ~~~~~pr~-yQ~e~l~~~l~~n---~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
...+.||. +|.-+++.++..+ +.+.+.-|||||+.|+....+... ..+..+++++-=|++++.+ .
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~---e~~~y~KiiVtRp~vpvG~----d---- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVL---ERKRYRKIIVTRPTVPVGE----D---- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHH---HHhhhceEEEecCCcCccc----c----
Confidence 34567765 6777888888744 467789999999988875444322 2345566888889988752 1
Q ss_pred cCCcEEEEECCC--CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccce----------eEEEEeCcccccCCC
Q 000379 117 TDFEVEEYYGAK--GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIV----------CFIVIDECHHATGNH 184 (1604)
Q Consensus 117 ~~~~v~~~~G~~--~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i----------~llI~DEaH~~~~~~ 184 (1604)
++.+-|.. ....|-....+..---...==|+.++|-..+.++.+.+..+ .+||+|||+++...
T Consensus 292 ----IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph- 366 (436)
T COG1875 292 ----IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH- 366 (436)
T ss_pred ----cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH-
Confidence 12222221 12233322222110001111123567777777666555443 47999999998642
Q ss_pred hHHHHHHHHHhhcCCCCcEEEE
Q 000379 185 PYTKIMKEFYHKSDNKPKVFGM 206 (1604)
Q Consensus 185 ~~~~im~~~~~~~~~~p~iLgL 206 (1604)
.|+-+........+|+++
T Consensus 367 ----eikTiltR~G~GsKIVl~ 384 (436)
T COG1875 367 ----ELKTILTRAGEGSKIVLT 384 (436)
T ss_pred ----HHHHHHHhccCCCEEEEc
Confidence 344444444555566543
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.1 Score=63.16 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=67.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
..+++++|||+|||.++.-++.++.... ....++..++-+.+ +.-+..|...+.+.+++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~--------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA--------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe---------------
Confidence 3467899999999998887776554311 11234445555554 333333344444444544321
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCC-CcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK-PKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~-p~iLgLTATP~ 211 (1604)
+.+++.+...+.. +.+.++||+|++.+...+...-.-+..++...... -.+|-|+||-.
T Consensus 239 ----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 239 ----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 2234444444432 35789999999998865422223344444333222 36699999843
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.025 Score=61.92 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=26.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
.++.+|+|+|||..++.++..... .+++++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEec
Confidence 468899999999988888776654 3456777766
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.049 Score=61.85 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=24.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEe
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA 100 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~Lv 100 (1604)
-+++++++|+|||..+..+..+..+ .+.+++|+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~------~~~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ------AGRSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEe
Confidence 3789999999999988877666543 233466654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.15 Score=61.08 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=63.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.+++++|||+|||..+..++..... ..+..+..++-+.+ +.=+.+|...+-+..++.+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~---~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~-------------- 200 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVM---RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV-------------- 200 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec--------------
Confidence 46789999999999998888776543 11223333333333 1223444555555555444332
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
.+++.+...+. .+.+.++|+||++=....+......+..+.......-.+|-|+||-.
T Consensus 201 -----------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~ 258 (374)
T PRK14722 201 -----------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH 258 (374)
T ss_pred -----------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC
Confidence 22222322222 23456899999995543332333334333221222345788899843
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.13 Score=68.18 Aligned_cols=101 Identities=16% Similarity=0.042 Sum_probs=64.3
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+.+.+-|.+++..+.. +-++|.++.|+|||.+.-.++ +.+. . .+..+++++||--- ++.++..+++.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~-~~~~---~--~g~~V~~~ApTg~A----a~~L~~~~g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR-EAWE---A--AGYRVIGAALSGKA----AEGLQAESGIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH-HHHH---h--CCCeEEEEeCcHHH----HHHHHhccCCc
Confidence 46789999999999875 446899999999998755543 3333 1 34569999999433 34444434332
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
.. |-..++..+.++...+...++||+|||-.+.
T Consensus 420 a~----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~ 452 (744)
T TIGR02768 420 SR----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG 452 (744)
T ss_pred ee----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC
Confidence 21 1122211122233345678899999998884
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.08 Score=58.14 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=69.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
+++++|||+|||..+.-++.++.. . +++..++-+. .|.=+.+|.+.+.+.+++++....-.. +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~----~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~--~--------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL----K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES--D--------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH----T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS--C---------
T ss_pred EEEECCCCCchHhHHHHHHHHHhh----c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch--h---------
Confidence 468999999999998888877654 2 3444444444 344455666666666776654322110 1
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
..+.+.+.+.. ..-++.++|++|-+-+...+.....-|+.+.....+....|-|+||-
T Consensus 68 ----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 68 ----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp ----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred ----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 11122222221 12245789999998776544344455666655554555678889884
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.059 Score=69.07 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
...+..-|++|+.+++. .-.+|.+=+|||||.....+|+-++. .+++||..+=|..-|+...-.++ ++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~------~gkkVLLtsyThsAVDNILiKL~---~~~ 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA------LGKKVLLTSYTHSAVDNILIKLK---GFG 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH------cCCeEEEEehhhHHHHHHHHHHh---ccC
Confidence 34688999999999984 45688888999999998888888776 56779999999777776655554 333
Q ss_pred EEEEE-CCCCCCc--------------cchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYY-GAKGVDE--------------WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~-G~~~~~~--------------~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
+.++. |....-. .+-....+.++...||.||-=-+ .|..+...+|++.|+|||-.+.
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi----~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI----NHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----CchhhhccccCEEEEccccccc
Confidence 33332 2211111 11122346677888999985332 2334456679999999998764
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.16 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+++.+++|+|||..+-.++..+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999987777766553
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.036 Score=66.23 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=74.9
Q ss_pred cHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEEC
Q 000379 47 RIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG 126 (1604)
Q Consensus 47 r~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 126 (1604)
.+-|.+++.. ..++++|.|..|||||.+.+..+.+++... ..+..++|+|+.|+..+....+.+...++-...
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~---- 74 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--GVPPERILVLTFTNAAAQEMRERIRELLEEEQQ---- 74 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--SSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH----
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccc--cCChHHheecccCHHHHHHHHHHHHHhcCcccc----
Confidence 4678889888 889999999999999999998888877511 134455999999999999988888874321100
Q ss_pred CCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcc--ceeEEEEeCcc
Q 000379 127 AKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD--IVCFIVIDECH 178 (1604)
Q Consensus 127 ~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~--~i~llI~DEaH 178 (1604)
....+. ...........+.|+|...+...+-+.+.... .-++-|+|+..
T Consensus 75 ~~~~~~---~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ESSDNE---RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCTT-H---HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccc---cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000000 11111223467889998877654433222111 12355666654
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.034 Score=57.11 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=27.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~ 104 (1604)
.++++.+|+|+|||..+..++..+.. ....++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEc
Confidence 56899999999999998887766532 2123666666543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.31 Score=62.93 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHhhc--------cCEE-EEeCCCChHHHHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR--------RNTI-AVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--------~n~I-v~~~TGsGKTliailli~~~~~ 85 (1604)
.+.-|+-|.+.+..++. .++| |+++||+|||.++-.++.++.+
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45568888887765542 3554 9999999999998888776643
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.16 Score=57.52 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhc---------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEE
Q 000379 48 IYQLKVFEVAKR---------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL 99 (1604)
Q Consensus 48 ~yQ~e~l~~~l~---------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~L 99 (1604)
+-|..++..+.+ .++++.+++|+|||..+..++.++.. .+..++|+
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~------~g~~v~~i 133 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL------RGKSVLII 133 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEE
Confidence 456666665542 46899999999999999988887765 23446555
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.19 Score=59.79 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=44.4
Q ss_pred CCCCcHHHHHHHHHhh---------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH
Q 000379 43 NFIPRIYQLKVFEVAK---------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l---------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~ 109 (1604)
...||..+..+++.+. +.+++++++||+|||+.+..++.+++. .+..|+|+.- ..|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~------~g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 158 PLSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD------RGKSVIYRTA-DELIEIL 226 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEEH-HHHHHHH
Confidence 3478999888887554 378999999999999999988888765 3444665543 4665554
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=57.45 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=31.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.++++.+++|+|||+.+..++.++.. .+..++|+ +...|..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~------~g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA------KGRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH------cCCCeEEE-EHHHHHHHHHH
Confidence 57899999999999999998888765 23334443 44466555443
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.1 Score=59.85 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=38.1
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+.|+++.+++|+|||+.|+.+..++.. .+. -+..+++..|+.+....+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~------~g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK------AGI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH------cCC-eEEEEEHHHHHHHHHHHHh
Confidence 479999999999999999998888764 233 4555666788887777655
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.087 Score=59.64 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=20.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.+++++|+|+|||..+..+..++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999988888777654
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.1 Score=59.27 Aligned_cols=42 Identities=10% Similarity=0.254 Sum_probs=25.5
Q ss_pred ceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEecc
Q 000379 168 IVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 168 ~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTAT 209 (1604)
+.++||+|+.|...+...+...+-..+......-+.+.+|++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 457899999998866544444444444333233355667766
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.13 Score=58.85 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=50.0
Q ss_pred HHHHHHhCCCceEEEEccccccccCCCCc--------cEEEEcCCCCCHHHHHHHhhhhcccCce
Q 000379 465 EVLESFRGGKVNLLFATDVIEEGMHVPNC--------SYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 465 ~vl~~Fr~g~~~iLIaT~vleeGIDip~~--------nlVI~fD~p~s~~syiQr~GRA~R~gs~ 521 (1604)
...+.|.+|+.+|+|.+..++.||-+.+- .+-|...+||+....+|..||+.|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 56778999999999999999999988753 2446788999999999999999999985
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.27 Score=60.74 Aligned_cols=118 Identities=22% Similarity=0.171 Sum_probs=65.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH-HHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA-QAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~-~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
.+++++|||+|||..+..++.++. . .+..+..++-+.+ +.-+..|...+.+..++.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALL----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----------------
Confidence 467889999999998888776654 2 2234444444443 2111222222222333322
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc-CCCCcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS-DNKPKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~-~~~p~iLgLTATP~ 211 (1604)
..+.++..+...+.. +.+.++||+|.+-+...+......+..+.... ......|.|+||..
T Consensus 282 --------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 --------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred --------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 122344444444442 33679999999977655444555566665422 23345788999864
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=59.22 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 49 YQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 49 yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
....++..+. ..++++++|+|+|||..+..+..+... .+.+++|+.-
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~v~y~~~ 81 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ------RGRAVGYVPL 81 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEEH
Confidence 3444444443 257899999999999988776665543 2344566543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.29 Score=58.37 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=62.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecCh--hhHHHHHHHHHhhcCCcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV--HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~--~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
+.+.+++|||+|||..+..+...+.. ...+..++-+.+- +-++|+..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~-----~GkkVglI~aDt~RiaAvEQLk~yae-~lgipv---------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEV---------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEEecCCcchHHHHHHHHHhh-hcCCcE----------------
Confidence 34679999999999988887766543 2334444455332 34455443222 222222
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEecc
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTAT 209 (1604)
+++.++..+.+.+.... .-.+.++|++|-+=+...+...-.-+..+.....+.-.+|-|+||
T Consensus 300 ---------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred ---------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 22346666665554211 112578999998866554433333334443322222234557776
|
|
| >KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.054 Score=66.22 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=49.6
Q ss_pred CCCchHHHHHHHHhcCCcceeeeeeeCc--eEEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q 000379 1370 ELPPLRELIELCDSLGYFVKENCTLKGE--MVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~--~~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
..+|+..|+|+.+ +.... .....|+ .+.|.|.|.+||..+. .| |.|||+||..||..||+.|..
T Consensus 89 ~~npv~ll~e~~~--~~~~~-~~~~~~~~~~~~F~~~~~vdg~~~~-~~-~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--GLFFD-FVNESGPQHAPKFVMSVVVDGRWFE-GG-GRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred cCCchHHHHHHhc--cccee-eeccCCCCCCceEEEEEEECCEEcc-CC-CcchHHHHHHHHHHHHHHHHh
Confidence 6899999999998 32222 2223333 3789999999997433 34 999999999999999999987
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.32 Score=65.58 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=63.5
Q ss_pred CCCCcHHHHHHHHHhhc-cC-EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR-RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~-~n-~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+.+.+-|.+++..++. .+ ++|.+..|+|||.+ +..+...++ ..+..|+.++||--- ++.+..-+|+.
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----~~G~~V~~~ApTGkA----A~~L~e~tGi~ 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----AAGYEVRGAALSGIA----AENLEGGSGIA 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----HcCCeEEEecCcHHH----HHHHhhccCcc
Confidence 46789999999999886 33 68999999999986 334444443 134568999999433 34444333321
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
. .|...|+.....+...+...++||+|||-.+.
T Consensus 414 a----------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~ 446 (988)
T PRK13889 414 S----------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG 446 (988)
T ss_pred h----------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC
Confidence 1 12222221112233345567899999999774
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.11 Score=58.60 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhhc-------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
-.+|......+++ .+.+.++|.|+|||-+|.++.+++.
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 3478777766542 5689999999999999999887764
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.11 Score=53.80 Aligned_cols=44 Identities=30% Similarity=0.340 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCC-ceEEEEccccccccCCCC--ccEEEEcCCCC
Q 000379 460 PKVQKEVLESFRGGK-VNLLFATDVIEEGMHVPN--CSYVIRFDLPK 503 (1604)
Q Consensus 460 ~~~r~~vl~~Fr~g~-~~iLIaT~vleeGIDip~--~nlVI~fD~p~ 503 (1604)
..+..++++.|++.. .-||++|.-..||||+|+ |..||...+|.
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 445678899998754 369999988999999997 78888776553
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.19 Score=63.24 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=32.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i 113 (1604)
.+++++|+|+|||..+-.+..++.+ ..++.+++++.. ..+..+....+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~----~~~~~~v~yi~~-~~~~~~~~~~~ 197 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILE----KNPNAKVVYVTS-EKFTNDFVNAL 197 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHH
Confidence 4789999999999988887776654 233455666644 35555444444
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.18 Score=57.08 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++.+++|+|||..+..+..+..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999988776654
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.31 Score=57.91 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=64.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEe-cC--hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLA-PT--VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~Lv-Pt--~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+++++++|+|||.+...++..+.. .+.+++++. .+ ..-++|+.. ....+++++... ..+.+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL~~-~a~~lgv~v~~~--~~g~dp------ 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQLEE-HAERLGVKVIKH--KYGADP------ 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCcCcHHHHHHHHH-HHHHcCCceecc--cCCCCH------
Confidence 458899999999988777765533 223344443 33 344455543 444566654321 111110
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
..++.+.+... .....++||+|.+++...+...-.-++.+.....+.-.+|-++|+.
T Consensus 208 -------------~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 208 -------------AAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred -------------HHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence 01122322221 1134679999999998755444444555544344445567788864
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.23 Score=57.11 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=39.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHh-hCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIK-SNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~-~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.|.+++++||.|||.++--..+..-.... ....-+.+++-+|..+=..-.+..|-..++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 78999999999999976444432211000 11123567777888887777777777766544
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.75 Score=57.24 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.+++++|+|+|||..+..+..++.. .+.+++++.. ..+..+...
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~------~~~~v~yi~~-~~f~~~~~~ 186 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE------SGGKILYVRS-ELFTEHLVS 186 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEeeH-HHHHHHHHH
Confidence 3789999999999988877776654 2344676654 344443333
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.65 Score=55.46 Aligned_cols=119 Identities=20% Similarity=0.176 Sum_probs=73.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh-HHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L-v~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.+.+++|||.|||..-.-++..... ..+.++..+|-..|-=. +..|.+...+.++++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~---~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp------------------ 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVM---LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP------------------ 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh---hccCcceEEEEeccchhhHHHHHHHHHHHhCCc------------------
Confidence 44679999999999876655544431 13455666777765222 222333333333333
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
=.+|-+|+-|...+. .+.+.++|.+|=+=+-..+..+..-|++|.......-.-|-||||-
T Consensus 263 -------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 263 -------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred -------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 345567777766655 3566789999988766555556667777765554445568899984
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.41 Score=58.54 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.+.-|.-|.+.+..++. .+++|++|+|+|||.++-.++.++.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45669999887766642 5789999999999998877776654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.27 Score=61.29 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=30.7
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
.+++++++|+|||..+..+..++.+ ..++.+++|+... .+..+...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi~~~-~f~~~~~~ 177 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITSE-KFLNDLVD 177 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEHH-HHHHHHHH
Confidence 4789999999999988777766554 2344557777543 44444333
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.95 Score=57.56 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=31.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+++++++|+|||+.+..+..++.. ...+.+++|+.- ..++.+....++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~----~~~g~~V~Yita-eef~~el~~al~ 364 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARR----LYPGTRVRYVSS-EEFTNEFINSIR 364 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEeeH-HHHHHHHHHHHH
Confidence 789999999999987776665543 223445666554 456655544443
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.25 Score=61.30 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=28.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
.+++++++|+|||..+..+..++.+ ..++..++++.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~----~~~~~~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILE----NNPNAKVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH----hCCCCcEEEEEH-HHHHHH
Confidence 3689999999999998777766654 233455677643 244443
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.27 Score=57.23 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHHHhh---c---cCEEEEeCCCChHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK---R---RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l---~---~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.+-+.+.+.+++..+. . +.+++.+++|+|||..+-.+...
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3445555666666553 2 35789999999999887766443
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.22 Score=66.19 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCC---CCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhC---
Q 000379 399 LHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFL---THLTVAYLTGSTTSVDALTPKVQKEVLESFRG--- 472 (1604)
Q Consensus 399 ~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~---~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~--- 472 (1604)
...+.+.|...-......++||..+-...+.+...+.....+ ...+..+.-+.+ ..++.+++++|+.
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-------~~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-------AQETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-------cchHHHHHHHHHHHHh
Confidence 345555554443344467899999988888777766642110 011233333431 2466889999964
Q ss_pred -CCceEEEEc--cccccccCCCC--ccEEEEcCCCC
Q 000379 473 -GKVNLLFAT--DVIEEGMHVPN--CSYVIRFDLPK 503 (1604)
Q Consensus 473 -g~~~iLIaT--~vleeGIDip~--~nlVI~fD~p~ 503 (1604)
|.-.||+|+ ..+.||||+++ |..||...+|-
T Consensus 580 ~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 580 EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 455699998 88999999997 88999888775
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.24 Score=55.53 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=29.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
+.+++++|+|||...-.+..++.+ ..++.+|+++... .........++
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~----~~~~~~v~y~~~~-~f~~~~~~~~~ 84 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK----QHPGKRVVYLSAE-EFIREFADALR 84 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH----HCTTS-EEEEEHH-HHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh----ccccccceeecHH-HHHHHHHHHHH
Confidence 689999999999965444444433 3345567776654 55554444444
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.34 Score=50.20 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCc---eEEEEccc--cccccCCCC--ccEEEEcCCCC
Q 000379 462 VQKEVLESFRGGKV---NLLFATDV--IEEGMHVPN--CSYVIRFDLPK 503 (1604)
Q Consensus 462 ~r~~vl~~Fr~g~~---~iLIaT~v--leeGIDip~--~nlVI~fD~p~ 503 (1604)
+..++++.|++..- .||+++.- +.||||+|+ |+.||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 33688999987543 58888876 999999997 88898877663
|
|
| >COG1939 Ribonuclease III family protein [Replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.33 Score=47.39 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=66.6
Q ss_pred CcchhhhhhhhHHHHHHHHHHHhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCC
Q 000379 1076 SMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPV 1155 (1604)
Q Consensus 1076 n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~ 1155 (1604)
|-=-|.|+||||+.+.|=.|+....-. ..+.||..=.+.||-+.=+.+-.. +..++...- ..|.-.|
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~--~~~~Lte~E---~~I~KRg------- 80 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKA--LLEFLTEEE---EEIVKRG------- 80 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHH--HHHHhhHHH---HHHHHHh-------
Confidence 444699999999999998887765433 689999999999987765443322 111211110 0111111
Q ss_pred CCCCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCChHHHHHHHHHh
Q 000379 1156 PCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1224 (1604)
Q Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~~~a~~~~~~l 1224 (1604)
+.....+. .+.+ -+..=-.|..+|||||..|+..-.+.-..++.|.
T Consensus 81 ---------------RNaks~T~---~kn~-----dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 81 ---------------RNAKSGTK---PKNT-----DVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred ---------------cccccCCC---CCCC-----ChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000000 0000 0122235788999999999999988777777665
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.25 Score=61.68 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=31.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
.+++++++|+|||..+..+..++.. ..++.+++++.. ..+..+....+.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHH
Confidence 4789999999999877655554432 234556776665 356555555443
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.77 Score=62.38 Aligned_cols=101 Identities=15% Similarity=-0.003 Sum_probs=64.2
Q ss_pred CCCCcHHHHHHHHHhhc--cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCc
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~--~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+.+.+-|.+++..+.. +=++|.++-|+|||.+.-.+. ..++ ..+..|+-++||- ..++.+++.+|+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~-~~~e-----~~G~~V~g~ApTg----kAA~~L~e~~Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR-EAWE-----AAGYRVVGGALAG----KAAEGLEKEAGIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH-HHHH-----HcCCeEEEEcCcH----HHHHHHHHhhCCC
Confidence 46789999999998753 346799999999998655443 3333 1345689999993 3455666555554
Q ss_pred EEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 121 v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+. .|+-....+...+..-++||+|||.++.
T Consensus 449 a~TIa----------------------------s~ll~~~~~~~~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 449 SRTLS----------------------------SWELRWNQGRDQLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred eeeHH----------------------------HHHhhhccCccCCCCCcEEEEECcccCC
Confidence 33221 1110111122345566799999999874
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.91 Score=56.20 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCCcHHHHHHHHHhh-----c---cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 42 INFIPRIYQLKVFEVAK-----R---RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-----~---~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..+.-|.-|.+.+..++ + .+++|++++|+|||.++-.++.++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556887877666553 1 6799999999999998877776654
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.5 Score=53.02 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 44 FIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+.-|.-|.+-+..++. .|++++++||+|||.++-.++.++..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 6779999888775542 77999999999999998888877655
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.27 Score=56.79 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=30.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
.++++.+++|+|||+.+..++.++.. . .+..++|+.. ..+..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~----~-~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR----K-KGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh----h-cCceEEEEEH-HHHHHH
Confidence 56899999999999999888877764 1 1344666553 355443
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.2 Score=61.00 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHhh-------ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHH--HHHHHhh
Q 000379 46 PRIYQLKVFEVAK-------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ--YDVIRVH 116 (1604)
Q Consensus 46 pr~yQ~e~l~~~l-------~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~--~~~i~~~ 116 (1604)
+.+-|.++++.++ +.++.|.++-|+|||++.-.++..+ . ..++.+++++||-.-+... -..+++.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~-----~~~~~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-R-----SRGKKVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-c-----cccceEEEecchHHHHHhccCCcchHHh
Confidence 5677999988772 3778899999999999765554443 2 2456699999995544433 3445556
Q ss_pred cCCcE
Q 000379 117 TDFEV 121 (1604)
Q Consensus 117 ~~~~v 121 (1604)
+++.+
T Consensus 76 f~i~~ 80 (364)
T PF05970_consen 76 FGIPI 80 (364)
T ss_pred cCccc
Confidence 65544
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.34 Score=59.82 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 69999999999999998887753
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.96 Score=47.75 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=27.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
++|.+++|+|||..+..++..... .+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcch
Confidence 678999999999998888776543 34446777665444
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.47 Score=62.16 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
..+.+-|.+++.... .+++|.+..|||||.+.+..+.+++... ......+++|+.|+..+....+.|...+
T Consensus 195 ~~L~~~Q~~av~~~~-~~~lV~agaGSGKT~vl~~r~ayLl~~~--~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNGE-DSLLVLAGAGSGKTSVLVARAGWLLARG--QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCCC-CCeEEEEeCCCCHHHHHHHHHHHHHHhC--CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 568899999987554 6789999999999999999888877521 1234569999999999988888887654
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.33 Score=63.60 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999998887764
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.23 Score=65.46 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=67.0
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEE
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 124 (1604)
.+.+-|.+++... .++++|.|..|||||.+.+..+.+++... .-+..++++|+-|+..+....+.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~-~g~~lV~AgpGSGKT~vL~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 2 RLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCHHHeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 4778899998753 57899999999999999999998888521 1234569999999999998888887655311
Q ss_pred ECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH
Q 000379 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158 (1604)
Q Consensus 125 ~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~ 158 (1604)
....|.|+|...|...
T Consensus 75 ------------------~~~~v~i~TfHS~~~~ 90 (672)
T PRK10919 75 ------------------EARGLMISTFHTLGLD 90 (672)
T ss_pred ------------------cccCcEEEcHHHHHHH
Confidence 0135778999887533
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.59 Score=56.45 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHhhc--c--CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR--R--NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--~--n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
-.++...+.+..+.. . ++++.+|+|+|||..+..+...+.
T Consensus 18 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 18 LGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred cCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666666666543 2 689999999999999988877654
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=92.07 E-value=2.1 Score=45.55 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=59.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+..|+.+|.|+||+..|..+++.++-. ..... -|..-.- ...+.....-.+..+..........
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~---~~~~~----~c~~c~~----c~~~~~~~~~d~~~~~~~~~~~~i~----- 83 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCS---NPNED----PCGECRS----CRRIEEGNHPDFIIIKPDKKKKSIK----- 83 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-T---T-CTT------SSSHH----HHHHHTT-CTTEEEEETTTSSSSBS-----
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCC---CCCCC----CCCCCHH----HHHHHhccCcceEEEecccccchhh-----
Confidence 347999999999999999998887641 11111 2222222 2233333333444443332211111
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCc--CccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~--~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
-+.+.+....-.. ......++||||||.+... ..+.+++ .+...+...+++++|-.+
T Consensus 84 ------------i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK-~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 84 ------------IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLK-TLEEPPENTYFILITNNP 142 (162)
T ss_dssp ------------HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHH-HHHSTTTTEEEEEEES-G
T ss_pred ------------HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHH-HhcCCCCCEEEEEEECCh
Confidence 1222222222111 1246889999999999653 3444444 333334445555555443
|
... |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.6 Score=53.97 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=32.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCc
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFE 120 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~ 120 (1604)
.+++++++|+|||.++..++.++.. ...+..++-+.+ ++-+.+|...+....++.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~-----~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK-----KGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 3678899999999999888876543 223434444443 233333444444455554
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.5 Score=50.87 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhh----------ccC--EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHH
Q 000379 46 PRIYQLKVFEVAK----------RRN--TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 46 pr~yQ~e~l~~~l----------~~n--~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~ 111 (1604)
..+.|..++..+. ..+ +++++++|+|||+.|..++.++.. .+..++|+ +...|..+...
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~------~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIE------KGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEE-EHHHHHHHHHH
Confidence 3455655555443 234 899999999999999988887765 23335554 44466655543
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.31 Score=52.66 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=30.0
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
+.|+++.+++|+|||+.|..++.++.. .+..++|+. ...|+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEE-HHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEee-cCceecc
Confidence 388999999999999999999888775 344466654 4455543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.74 Score=52.10 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred HHHHHHHHHhh-----ccCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 48 IYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 48 ~yQ~e~l~~~l-----~~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
......+..+. .+.+++++++|+|||..+..+..+...
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445555442 256899999999999988877665543
|
|
| >KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.12 Score=60.62 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=48.5
Q ss_pred hhHHHHHHhCCCCCCceeEeecccccccccccCCcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHH
Q 000379 1512 TSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLH 1591 (1604)
Q Consensus 1512 ~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~Gp~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~ 1591 (1604)
-.|+||+|+-....|.|+.-+- +.++ ..|...|++.. .-++.|.| +|||.||..||+.+|.
T Consensus 379 CiLhEy~q~~lk~~pvyef~e~---------~n~s-----tpysa~v~~d~----~~yGsG~g-~sKK~Ak~~AAR~tLe 439 (650)
T KOG4334|consen 379 CILHEYAQQCLKSLPVYEFAEN---------DNNS-----TPYSAGVLPDL----FPYGSGVG-ASKKTAKLVAARDTLE 439 (650)
T ss_pred ehHHHHHHHHhhhcceeehhhc---------cCCC-----Ccccccccccc----cccccccc-cchHHHHHHHHHHHHH
Confidence 7899999999999999987653 3332 35777777743 33445666 6799999999999998
Q ss_pred HH
Q 000379 1592 EL 1593 (1604)
Q Consensus 1592 ~l 1593 (1604)
.|
T Consensus 440 iL 441 (650)
T KOG4334|consen 440 IL 441 (650)
T ss_pred Hh
Confidence 77
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.39 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++.+|+|+|||.+|-.+...+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999988877654
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.41 E-value=2.3 Score=49.03 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=64.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC--hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT--VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt--~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
..+.+++++|+|||..+..++..+.. ...+..++-+.+ ...+.||..... ..++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~-----~~~~v~~i~~D~~ri~~~~ql~~~~~-~~~~~~~--------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEVI--------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecCCCCHHHHHHHHHHhh-hcCceEE---------------
Confidence 45678899999999988777665432 123333444433 256677765433 2222221
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
...++..+.+.+..- -...+.++||+|-+=+...+...-.-|..+.....+.-.+|-|+||-
T Consensus 135 ----------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 135 ----------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 112444454444321 11235799999998665444343444444443333333467788874
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.88 Score=54.41 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 48 IYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 48 ~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+...+.+..+.. .++++++|.|+|||..+..+++++.
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444444432 5689999999999999988887764
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.91 Score=52.34 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=29.6
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
+.|+++.+|+|+|||..+..+...... .+..++|+. ...|..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~------~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR------AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEe-HHHHHHH
Confidence 488999999999999998887655443 234466654 3355443
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.66 Score=54.75 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=22.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+++++.+++|+|||+.+..++.++..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999988888764
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.3 Score=49.62 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=59.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh-cCCcEEEEECCCCCCccchh--
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH-TDFEVEEYYGAKGVDEWDSQ-- 136 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~-~~~~v~~~~G~~~~~~~~~~-- 136 (1604)
.-+++.+++|+|||..+..++.+... ..+..++|+.-- .-..+....+... .+..+..... ...+..+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~-----~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~ 101 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT-----QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDT---VFIYTLEEF 101 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH-----hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCc---cccccHHHH
Confidence 45789999999999988887766654 114457777643 2234445444332 3433322111 1112222
Q ss_pred -HHHHhcC-CCcEEEE------cHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 137 -CWQKEIN-KNDVLVM------TPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 137 -~w~~~~~-~~~ViV~------T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
.|...+. ...+.+- |...+...+..- ..-..+++||+|..+.+..
T Consensus 102 ~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 102 DAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 2222222 2223221 445555554432 1223688999999888754
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.64 Score=57.17 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=50.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.-.||.+..|||||.+|+-.+.+++..-+..-.++-|+++.|++.+..=...++-
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLP------------------------ 281 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLP------------------------ 281 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhch------------------------
Confidence 34468899999999999999888887633333334449999999887653333322
Q ss_pred HHhcCCCcEEEEcHHHHH
Q 000379 139 QKEINKNDVLVMTPQILL 156 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll 156 (1604)
.++...|+..|++-+.
T Consensus 282 --eLGe~~V~q~Tf~e~a 297 (747)
T COG3973 282 --ELGEEGVVQETFEEWA 297 (747)
T ss_pred --hhccCceeeccHHHHH
Confidence 2335678888888764
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=2 Score=51.40 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=54.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh--hHHHHHHHHHhhcCCcEEEEECCCCCCccchhH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH--LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~--Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~ 137 (1604)
+.+.+++|+|+|||..+..++..+.. ...+..++-+.+-- -+.||..... ..++.+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~-----~g~~V~lItaDtyR~gAveQLk~yae-~lgvpv~--------------- 265 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLK-----QNRTVGFITTDTFRSGAVEQFQGYAD-KLDVELI--------------- 265 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCCccCccHHHHHHHHhh-cCCCCEE---------------
Confidence 44678999999999988887766543 12344444444422 2445544332 2332221
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHH
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~ 193 (1604)
++.+|+.+.+.+..-. ...+.++|++|=+=+...+...-.-+..+
T Consensus 266 ----------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l 310 (407)
T PRK12726 266 ----------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAY 310 (407)
T ss_pred ----------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHH
Confidence 2235666655444211 12457899999875543332333333433
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.86 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~ 83 (1604)
+++.+|.|+|||..+-.++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999999887776654
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.2 Score=53.28 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=59.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w 138 (1604)
+.+.++++||+|||..+..++..+.. ....++..++-+.+ +.-...|.......+++.+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~---~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~--------------- 412 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAA---QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE--------------- 412 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---hcCCCceEEEecccccccHHHHHHHhhcccCceeEe---------------
Confidence 45678899999999988877766543 11123333333333 322222222222233332211
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCC
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~ 211 (1604)
+.+...+...+.. +.+.++||+|.+=....+......+..+.. ....-.+|.+++++.
T Consensus 413 ----------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss 470 (559)
T PRK12727 413 ----------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAH 470 (559)
T ss_pred ----------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCC
Confidence 1133344444442 346789999999665433233322332221 122346778888753
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.8 Score=56.53 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=62.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChh--hHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH--LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~--Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.+++|||+|||.+...+...+.. ..+.++..++-+.+-- -++|+ ..+.+..++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~---~~G~kkV~lit~Dt~RigA~eQL-~~~a~~~gvpv------------------ 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA---REGADQLALLTTDSFRIGALEQL-RIYGRILGVPV------------------ 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH---HcCCCeEEEecCcccchHHHHHH-HHHHHhCCCCc------------------
Confidence 458899999999988777665432 1222343444444321 23333 33333333222
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
.++.+++.+.+.+.. +.+.++|+||=+=+...+......+..+.....+.-.+|-|+||-
T Consensus 246 -------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 -------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS 305 (767)
T ss_pred -------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC
Confidence 233467777666653 346689999988665444333333333322222334568888883
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.3 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=20.3
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.+++++|||+|||..+..++.++..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4668899999999998888776643
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.1 Score=52.51 Aligned_cols=57 Identities=16% Similarity=-0.023 Sum_probs=34.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCcEEE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
+.+++++|+|||..+..++.++.. . ..+..|+-+. .++-+.+|.+...+..++++..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~----~-G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR----K-GFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 458899999999988887766533 1 2333333343 3555555655555556655543
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=90.01 E-value=3.7 Score=52.39 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=44.7
Q ss_pred HHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 53 VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 53 ~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
+++...++-.++.+|=|.|||.+..+++..++. . .+.+|++.+|...-+.+..+.++..+
T Consensus 181 ~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~---f--~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 181 IFDEYGKCYTAATVPRRCGKTTIMAIILAAMIS---F--LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred HHHHHhhcceEEEeccCCCcHHHHHHHHHHHHH---h--cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 344445577888999999999988877666553 1 24569999999888888887766654
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.3 Score=57.10 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|++++.|+|||.++..+.+.+.
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998888764
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.5 Score=52.41 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
...|||...+..+.. +-.++.+|.|+|||..|..+++.++
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 457999999998874 3378999999999999998888765
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=3.7 Score=52.29 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCCCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhh
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 42 ~~~~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~ 116 (1604)
..+.++++|.+++..+. ++-.++..+=..|||.++..++.+..- ..++..+++++|+..-+....+.++..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~----~~~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC----FNKDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 45889999999998764 344578888999999987765443322 123457999999988777766666643
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.53 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=19.6
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
.++|+++|.|+|||..|-.+..++
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 358999999999999887776654
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.37 Score=60.22 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=81.9
Q ss_pred CCCCcHHHHHHHHHhh-----------ccCEEEEeCCCChHHHHHHHHHHH-HHHHHhhCCCCeEEEEEecChhhHHHHH
Q 000379 43 NFIPRIYQLKVFEVAK-----------RRNTIAVLETGAGKTMIAVMLIKD-IAQAIKSNGFKKLIIFLAPTVHLVHQQY 110 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l-----------~~n~Iv~~~TGsGKTliailli~~-~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~ 110 (1604)
.-.+...|.|++-.+- +-..+|.+.-|.||-.....+|.+ .+ .++++-.||-|- ..|-..-.
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-----kGRKrAlW~SVS-sDLKfDAE 335 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-----KGRKRALWFSVS-SDLKFDAE 335 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-----cccceeEEEEec-cccccchh
Confidence 3456789999886552 134677777777775533333333 33 345554555554 47766666
Q ss_pred HHHHhh--cCCcEEEEE----CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHh-------cC-----cCccce-eE
Q 000379 111 DVIRVH--TDFEVEEYY----GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK-------AF-----LSLDIV-CF 171 (1604)
Q Consensus 111 ~~i~~~--~~~~v~~~~----G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~-------~~-----~~l~~i-~l 171 (1604)
+.++.. +++.|..+. +-.+.+. + .--.-.|+++||..|...-.. .+ +.-.++ .+
T Consensus 336 RDL~DigA~~I~V~alnK~KYakIss~e------n-~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGv 408 (1300)
T KOG1513|consen 336 RDLRDIGATGIAVHALNKFKYAKISSKE------N-TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGV 408 (1300)
T ss_pred hchhhcCCCCccceehhhcccccccccc------c-CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcccee
Confidence 666653 234443331 1111110 0 001347999999888543221 01 011222 59
Q ss_pred EEEeCcccccCCCh--------HHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 172 IVIDECHHATGNHP--------YTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 172 lI~DEaH~~~~~~~--------~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
|||||||.+.+-.| ..+-+-++ ...-+..|++--|||-
T Consensus 409 IvfDECHkAKNL~p~~~~k~TKtG~tVLdL-Qk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 409 IVFDECHKAKNLVPTAGAKSTKTGKTVLDL-QKKLPNARVVYASATG 454 (1300)
T ss_pred EEehhhhhhcccccccCCCcCcccHhHHHH-HHhCCCceEEEeeccC
Confidence 99999999975322 12222222 2223567899999983
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.5 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+..|+++|.|+|||.+|..+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHc
Confidence 4689999999999999988877653
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.2 Score=56.93 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 49 YQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 49 yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+-.+.+..+.. +-+|+++|.|+|||.+|..+++.+.
T Consensus 22 ~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 22 HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444544442 3359999999999999988887763
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.7 Score=53.58 Aligned_cols=122 Identities=15% Similarity=0.238 Sum_probs=86.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHhcCCCc
Q 000379 67 ETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146 (1604)
Q Consensus 67 ~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ 146 (1604)
-+++||+-..++.++++.. .+-++.+++.+-+.+=+.|.+.++..+-++++..+||......-+...-.-..+...
T Consensus 365 lvF~gse~~K~lA~rq~v~----~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA----SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred heeeecchhHHHHHHHHHh----ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 3689999999999998876 334555888888889999999999867789999999986543211111111225678
Q ss_pred EEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccCCCCC
Q 000379 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 147 ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP~~~~ 214 (1604)
|+||| +.+.+| +++..+++||-+..-...- .| .+|| |+||++....
T Consensus 441 vLicT-----dll~RG-iDf~gvn~VInyD~p~s~~---------sy------ihrI-GRtgRag~~g 486 (593)
T KOG0344|consen 441 VLICT-----DLLARG-IDFKGVNLVINYDFPQSDL---------SY------IHRI-GRTGRAGRSG 486 (593)
T ss_pred EEEeh-----hhhhcc-ccccCcceEEecCCCchhH---------HH------HHHh-hccCCCCCCc
Confidence 99999 456677 7899999999977643311 11 1344 9999987653
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.7 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++++.+|+|+|||.+|-.+...+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999998877654
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.4 Score=58.60 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
+.+-|.+++.. ..++++|.+..|||||.+.+..|.+++.. ..-+..++++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQN--CGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh--cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 57889888865 35789999999999999999998888751 11234569999999888888888887655311
Q ss_pred CCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHH
Q 000379 126 GAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l 159 (1604)
...+|-|+|...|...+
T Consensus 74 -----------------~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLDI 90 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHHH
Confidence 02468899998885443
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.4 Score=56.25 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|++++.|+|||.++..+++.+.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999888764
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.1 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..+|+.+|.|+|||.+|..+++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 4478999999999999999888764
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=88.97 E-value=3.9 Score=50.47 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=36.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~ 123 (1604)
+++++++|+|||.++.-++.++.. ....+.+++=+.+ ++-+.+|.+.+....++++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~----~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK----KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 568899999999999988877542 1234444555543 344445555555556665543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.6 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.+.|+++|.|+|||.+|-++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh
Confidence 77999999999999998877654
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=4.4 Score=49.33 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=61.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
+++++|+|+|||.++..++.+... ....+..++-+.+ +..+..|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~----~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL----HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----hcCCeEEEecccchhhhHHHHHHHHHHhcCCCee------------------
Confidence 568899999999999888765432 1223334444444 33333333333223332221
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcC---CCCcEEEEeccCC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD---NKPKVFGMTASPV 211 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~---~~p~iLgLTATP~ 211 (1604)
.+..+..+...+. -...++||+|=+-+...+.....-|..+..... +...+|-|+||-.
T Consensus 284 -------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 284 -------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred -------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 1111223333332 246789999987665444344455555554321 2246788898843
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.6 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68999999999999998887764
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.7 Score=54.98 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhc----------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhc
Q 000379 48 IYQLKVFEVAKR----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 48 ~yQ~e~l~~~l~----------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~ 117 (1604)
|+|.-++..+.+ +.+++..+=|-|||..+..++...+- .....+..+++.++++.-+...++.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~--~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLF--LDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHh--cCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 678887777653 44788899999999977766554432 112345669999999988888888877755
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.6 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|+++|.|+|||.+|-.++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68999999999999988877653
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.3 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+|++++.|+|||.+|..+++.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4479999999999999998887764
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=4.3 Score=50.16 Aligned_cols=57 Identities=25% Similarity=0.176 Sum_probs=34.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec-ChhhHHHHHHHHHhhcCCcEE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP-t~~Lv~Q~~~~i~~~~~~~v~ 122 (1604)
+++++++|+|||.++.-++.++.. ...++..++=+. .++-+..|.+.+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~----~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKK----KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH----hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 568899999999999988877654 213343444444 344433334444445565543
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.7 Score=52.64 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=25.2
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
-+.+++++|+|||+..-.+-.+..+ .++..+++++..
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~s 151 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTS 151 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccH
Confidence 3679999999999976655544443 445555666654
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=88.30 E-value=2.8 Score=61.63 Aligned_cols=134 Identities=18% Similarity=0.138 Sum_probs=76.1
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
.+.+.+-|.+++..++. +=.||.++.|+|||.+.-.++ .+++ ..+..|+.++||---+ +.+...++.
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~-~~~~-----~~G~~V~~lAPTgrAA----~~L~e~~g~ 496 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL-HLAS-----EQGYEIQIITAGSLSA----QELRQKIPR 496 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-HHHH-----hcCCeEEEEeCCHHHH----HHHHHHhcc
Confidence 46788999999999875 346788999999998654443 3333 2356799999995443 444443333
Q ss_pred cEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCC
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDN 199 (1604)
Q Consensus 120 ~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~ 199 (1604)
.... ...|...+... .-..|.+.|+ .....+..-++||+|||-++... .+..+++. ....
T Consensus 497 ~A~T-----------i~~~l~~l~~~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~~-~~~~Ll~~---a~~~ 556 (1960)
T TIGR02760 497 LAST-----------FITWVKNLFND-DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSNN-ELLKLIDK---AEQH 556 (1960)
T ss_pred hhhh-----------HHHHHHhhccc-ccchhHHHhh----cccCCCCCCCEEEEECCCCCCHH-HHHHHHHH---Hhhc
Confidence 2211 11233322111 1223444443 12234456789999999987432 33333331 1223
Q ss_pred CCcEEEE
Q 000379 200 KPKVFGM 206 (1604)
Q Consensus 200 ~p~iLgL 206 (1604)
..+++++
T Consensus 557 garvVlv 563 (1960)
T TIGR02760 557 NSKLILL 563 (1960)
T ss_pred CCEEEEE
Confidence 4566655
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=88.28 E-value=6.5 Score=45.66 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+++++++|+|||.++..++..+..
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 457799999999998888876643
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.81 Score=61.14 Aligned_cols=71 Identities=15% Similarity=0.033 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
.+.+-|.+++... ..+++|.|..|||||.+.+..|.+++... .-+...+|+|+-|+..+....+.+.+.++
T Consensus 4 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~L~~Ria~Li~~~--~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAAP-PGNLLVLAGAGSGKTRVLTHRIAWLLSVE--NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4788999998653 57899999999999999999988887521 12345699999999999988888887653
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.96 Score=60.45 Aligned_cols=71 Identities=18% Similarity=0.060 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD 118 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~ 118 (1604)
.+.+-|.+++... .++++|.|..|||||.+.+..|.+++... .-+...+|+|+-|+..+....+.+.+.++
T Consensus 9 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVE--NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4788999998754 57899999999999999999888887521 12345699999999999988888887653
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=1 Score=53.30 Aligned_cols=56 Identities=27% Similarity=0.295 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 46 PRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 46 pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
..+.|.+.+..+. +.|+||+++||||||...-.++..+.. ..+..+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~----~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA----SAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc----CCCCceEEEecCCccc
Confidence 4567888888776 489999999999999876555544322 2234567777777676
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=2.3 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+.+++++|+|+|||..+-.++.++
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999887776653
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=1 Score=53.48 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 46 PRIYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 46 pr~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
..+.|.+.+..+. +.|++|+++||||||...-.++.++.. ..+..+++.+=.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~----~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVI----QDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhh----cCCCceEEEEcCCCcc
Confidence 3456888888774 489999999999999766555554422 2344567777777766
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.5 Score=50.12 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=27.3
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvP 101 (1604)
.-++|.+++|+|||..++-++.+... ..+..++|+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-----~~g~~vly~s~ 50 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAK-----KQGKPVLFFSL 50 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCceEEEeC
Confidence 34678999999999988888777665 11445788774
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=2.5 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++++.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999999988877764
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.61 Score=51.27 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=23.4
Q ss_pred ceeEEEEeCcccccCCChH-----HHHHHHHHhh-cCCCCcEEEEeccCC
Q 000379 168 IVCFIVIDECHHATGNHPY-----TKIMKEFYHK-SDNKPKVFGMTASPV 211 (1604)
Q Consensus 168 ~i~llI~DEaH~~~~~~~~-----~~im~~~~~~-~~~~p~iLgLTATP~ 211 (1604)
.-.++|+||||........ ...+ .++.. ....--++++|=+|.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeCCHH
Confidence 4479999999998755333 2344 33332 334567888886653
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=87.67 E-value=3.2 Score=48.93 Aligned_cols=54 Identities=33% Similarity=0.422 Sum_probs=36.9
Q ss_pred HHHHHHHHHhh--ccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 48 IYQLKVFEVAK--RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 48 ~yQ~e~l~~~l--~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
+-|.+.+..+. +.|++|+++||||||..+-.++..+.. ..+..+++.+=.+.+|
T Consensus 119 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~----~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 119 AAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK----NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc----cCCCceEEEECCchhh
Confidence 34566666665 489999999999999877665544321 2234567777777676
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.66 E-value=3.4 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
..++.+|.|+|||..|..+++.++.
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4789999999999999888887753
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.9 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+++.+|.|+|||..|-.+++.+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988877653
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=4.9 Score=49.35 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=59.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhh-HHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL-VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~L-v~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~ 140 (1604)
+.++++||+|||.....++..... ..+..+..++.+++.-. +.+|...+.+..++.+...
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~~~---~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v---------------- 254 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARAVI---RHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI---------------- 254 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC----------------
Confidence 568899999999877665543322 12234445666666222 3344445555555544322
Q ss_pred hcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEeccC
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTATP 210 (1604)
.++..+...+. .+.+.+++++|.+=+...+......+..+.......-.+|.|+||-
T Consensus 255 ---------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~ 311 (420)
T PRK14721 255 ---------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS 311 (420)
T ss_pred ---------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC
Confidence 22222222222 2456788999986222221122233333221122234568899984
|
|
| >PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function | Back alignment and domain information |
|---|
Probab=87.47 E-value=4.1 Score=38.08 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=54.7
Q ss_pred hhhhhhhHHHHHHHHHH--HhhCCCCCcchHHHHHHHhhchHHHHHHHHhCCCccccccccCCCCCccCCCccCCCCCCC
Q 000379 1080 LELLGDSVLKYAVSCHL--FLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPC 1157 (1604)
Q Consensus 1080 LE~LGDs~Lk~~~s~~l--~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gl~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1157 (1604)
|.-+|||...|+.|..| |.-+|+-. -|-|..|+..-..-||...+.-.
T Consensus 3 Lak~GDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiAl~~a~L~~~~~PR-------------------- 52 (120)
T PF11469_consen 3 LAKFGDSLVNFLFSLALSEYLGRPTGD----------RVPNASLAIALELAGLSHLLPPR-------------------- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--C--------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHHhhhhhCccc--------------------
Confidence 67799999999999988 56666532 38899999988888887766511
Q ss_pred CCCCCcccccCCCCccccccccccCCccCCCccccCCchhHHHHHHHHHHhhhcCCh--HHHHHHHH
Q 000379 1158 ECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGL--IAALYMMK 1222 (1604)
Q Consensus 1158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAliGA~~~~~G~--~~a~~~~~ 1222 (1604)
+....-.|..||+|.-+|+.|-+ +.|..+++
T Consensus 53 ----------------------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 ----------------------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp ----------------------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ----------------------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 11234579999999999999874 56666553
|
; PDB: 1ZTD_A. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.9 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+|+++|.|+|||.+|-.+++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999998887764
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.09 E-value=5.6 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHhhc----cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~----~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
-+..+.+.+..+.+ .+++++++.|+|||.++-.+..++
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 21 GQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555555543 358999999999999888776665
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=2.1 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999998887764
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=87.02 E-value=1.5 Score=56.50 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=57.5
Q ss_pred CCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC----CceEEEEcccccccc
Q 000379 413 TQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG----KVNLLFATDVIEEGM 488 (1604)
Q Consensus 413 ~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g----~~~iLIaT~vleeGI 488 (1604)
..++++|-+.+......++..|... +. -...+.|.. ..+...+++|++. +-.||++|+.+.|||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~--l~--~~~l~qg~~--------~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELG--IP--AEIVIQSEK--------NRLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhh--cC--CCEEEeCCC--------ccHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 3457888888888888888887642 11 234455641 1346789999974 788999999999999
Q ss_pred CC--------C--CccEEEEcCCCCC
Q 000379 489 HV--------P--NCSYVIRFDLPKT 504 (1604)
Q Consensus 489 Di--------p--~~nlVI~fD~p~s 504 (1604)
|+ | .|..||...+|-.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~ 562 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFG 562 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCC
Confidence 99 3 3999998777643
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=2.9 Score=52.97 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=80.1
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcC-----CcEEEEECCCCCCccc
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-----FEVEEYYGAKGVDEWD 134 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~-----~~v~~~~G~~~~~~~~ 134 (1604)
+-+++..|=-.|||.+.+..|..++. .-++.++++.+|....++...++++..+. ..+....|. .. .
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~----s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I-~-- 326 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALA----TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI-S-- 326 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHH----hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE-E--
Confidence 55788899999999977754443432 23567799999999999999998887532 123233331 11 0
Q ss_pred hhHHHHhcC-C--CcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhcCCCCcEEEEecc
Q 000379 135 SQCWQKEIN-K--NDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 135 ~~~w~~~~~-~--~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~~~~p~iLgLTAT 209 (1604)
-.+. + ..|.+.+. -..+.+.-..++++|+|||+.+..+ .+..++- +. ....|+++.+|-|
T Consensus 327 -----i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~ilp-~l--~~~n~k~I~ISS~ 389 (738)
T PHA03368 327 -----FSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIMG-FL--NQTNCKIIFVSST 389 (738)
T ss_pred -----EEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHHH-HH--hccCccEEEEecC
Confidence 0111 1 24555432 1223344557999999999999764 5555552 22 2347899999866
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=2 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=25.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT 102 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt 102 (1604)
.++++|+|+|||...+..+..... .+++++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEec
Confidence 368999999999876666655433 44558888886
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.2 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
.|+.++.|+|||.+|..+++.+.-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 589999999999999998877653
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.3 Score=41.17 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=19.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+-+++.+|.|+|||.++-.++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4478999999999998777766553
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.77 E-value=0.54 Score=53.48 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.4
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+.|+++.+|||||||+.|--+++.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999999999988776543
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=86.72 E-value=7.2 Score=41.89 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+++.+++|+|||..+..++..+.+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999888776654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.9 Score=57.64 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|++++.|+|||.+|..+.+.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999888764
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=86.67 E-value=1.7 Score=55.87 Aligned_cols=156 Identities=11% Similarity=0.120 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH-HHhhc-
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV-IRVHT- 117 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~-i~~~~- 117 (1604)
.....|||.|.++.+-. +.+.+..++-+|||.+.+..+-+.+. ..+. .++++.||..++..+.+. |.-.+
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~----~~P~-~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID----QDPG-PMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE----eCCC-CEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 44789999999999976 56788999999999977776665543 2333 489999999999887643 33222
Q ss_pred --C-CcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC-----ChHHHH
Q 000379 118 --D-FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN-----HPYTKI 189 (1604)
Q Consensus 118 --~-~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~-----~~~~~i 189 (1604)
+ ++ ..+......+. ......+.+.+..+.+.....- +.+....+.+|++||++....+ +|....
T Consensus 89 ~sp~l~-~~~~~~~~~~~-~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la 160 (557)
T PF05876_consen 89 ASPVLR-RKLSPSKSRDS-GNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELA 160 (557)
T ss_pred hCHHHH-HHhCchhhccc-CCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHH
Confidence 1 11 11211111111 1112233444555555543321 2334456789999999999532 455554
Q ss_pred HHHHHhhcCCCCcEEEEeccCCCC
Q 000379 190 MKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 190 m~~~~~~~~~~p~iLgLTATP~~~ 213 (1604)
.+....- ... +.+.+..||...
T Consensus 161 ~~R~~tf-~~~-~K~~~~STPt~~ 182 (557)
T PF05876_consen 161 EKRTKTF-GSN-RKILRISTPTIE 182 (557)
T ss_pred HHHHhhh-ccC-cEEEEeCCCCCC
Confidence 4432111 123 345566688764
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=86.54 E-value=1.8 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.4
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~ 82 (1604)
+.|+|..+|+|+|||.+|..+-.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 489999999999999988875444
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.46 E-value=4 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 58999999999999998888765
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=86.45 E-value=2.6 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.5
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+++++++|+|+|||.++-.++.++
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhh
Confidence 679999999999999887776655
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=2.3 Score=52.07 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHhh-ccCEEEEeCCCChHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l-~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
-+..-...++..+. ++|+|+++++|+|||.+|-.+...+
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34444445555554 5999999999999999987765544
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=5.9 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHhhc----cCEEE-EeCCCChHHHHHHHHHHH
Q 000379 43 NFIPRIYQLKVFEVAKR----RNTIA-VLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~----~n~Iv-~~~TGsGKTliailli~~ 82 (1604)
.+...+...+.+..+.+ .+.++ ++|+|+|||..+-.+..+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 33444455555554432 34555 899999999987766544
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.5 Score=47.69 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=34.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
++|.+++|+|||..+..++.+.+. .+..++|+... +-..|..+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECC-CCHHHHHHHHHH
Confidence 689999999999999988877664 34447777654 445666655554
|
A related protein is found in archaea. |
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=3.6 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999888764
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=85.81 E-value=4.4 Score=50.60 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=32.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecC-hhhHHHHHHHHHhhcCCcE
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEV 121 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v 121 (1604)
+.+++|||+|||.++..+...+.. ..+.++..++-+.+ +.=+.+|...+.+..++.+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~---~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVM---RHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHH---hcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 458899999999988887765532 12223434444443 2234445555555555443
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=85.77 E-value=0.47 Score=51.21 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=29.7
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcC--ccceeEEEEeCcccccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLS--LDIVCFIVIDECHHATG 182 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~--l~~i~llI~DEaH~~~~ 182 (1604)
.....++|||+++.-|++......+. ...-.+|||||||++-+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34467899999999998765443322 22347999999999853
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.67 E-value=3.3 Score=52.86 Aligned_cols=38 Identities=29% Similarity=0.202 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
++.-.+.+..+.. +-.|+++|.|+|||..|..+++.+.
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444432 3478999999999999999887764
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=4.9 Score=56.81 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 44 FIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
..+.+-|.+++..++. +-++|.+..|+|||.+.-.++..+ .... ...+..++.++||---+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~-~~l~-e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAV-NMLP-ESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHH-HHHh-hccCceEEEEechHHHH
Confidence 4689999999999874 557899999999998754333221 1111 12345688899994443
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.47 E-value=4.1 Score=48.28 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.++|||..+++.+.. +-.++.+|.|+||+..|..+++.++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 467899998887752 2378999999999999998888775
|
|
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=85.46 E-value=0.75 Score=52.18 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=28.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
.+|++|||+||+.. ++.++....-......|+|++|++..+
T Consensus 90 ~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 46899999999973 444443222234556799999988764
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.27 E-value=8.2 Score=48.06 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=98.6
Q ss_pred CCCCCCCcHHHHHHHHHhhc-----------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHH
Q 000379 40 NSINFIPRIYQLKVFEVAKR-----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108 (1604)
Q Consensus 40 ~~~~~~pr~yQ~e~l~~~l~-----------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q 108 (1604)
....+.+-|||.-++-.+.+ .-.+|.+|-|-|||..+..++...+-- ....+..+.+++|+..-+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~--~~~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLL--NWRSGAGIYILAPSVEQAAN 133 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHh--hhhcCCcEEEEeccHHHHHH
Confidence 55678889999999998874 336899999999998666443332211 12345569999999887777
Q ss_pred HHHHHHhhcCCcEEEEECCCCCCccchhHHHHhcCCCcEEEEcHH---HHHHHHHh--cCcCccceeEEEEeCcccccCC
Q 000379 109 QYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQ---ILLDALRK--AFLSLDIVCFIVIDECHHATGN 183 (1604)
Q Consensus 109 ~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~~~~~~ViV~T~q---~Ll~~l~~--~~~~l~~i~llI~DEaH~~~~~ 183 (1604)
-++.++...-..- +.. -....+.+.+. ++.. ..+..+.+ +...-.+..+.||||.|...+.
T Consensus 134 ~F~~ar~mv~~~~-----~l~--------~~~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 134 SFNPARDMVKRDD-----DLR--------DLCNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred hhHHHHHHHHhCc-----chh--------hhhccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 7777775431000 000 00000111111 1111 11111222 2334456679999999998764
Q ss_pred -ChHHHHHHHHHhhcCCCCcEEEEeccCCCCCCCCCcccHHHHHHHHHhhcCCcee
Q 000379 184 -HPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238 (1604)
Q Consensus 184 -~~~~~im~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~ 238 (1604)
.-|+.+.... -..+.+.+++.|-++.... .-+.+........++..+.
T Consensus 200 ~~~~~~~~~g~--~ar~~~l~~~ITT~g~~~~-----g~~~q~~~y~k~vl~g~~~ 248 (546)
T COG4626 200 EDMYSEAKGGL--GARPEGLVVYITTSGDPPA-----GVFKQKLQYAKDVLDGKIK 248 (546)
T ss_pred HHHHHHHHhhh--ccCcCceEEEEecCCCCCc-----cHHHHHHHHHHHHhcCCcC
Confidence 1222221111 1235678888886544332 3456667777777765433
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.6 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.6
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|+++|.|+|||.+|..+++.+.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 358999999999999998887764
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.91 E-value=4.4 Score=43.57 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=51.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHHHh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~~~ 141 (1604)
.++++|+.||||..-+..++.... .+.++++..|..-- ..+.. .+..-.+..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD~----------R~~~~--~V~Sr~G~~---------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAIDT----------RYGVG--KVSSRIGLS---------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEeccccc----------ccccc--eeeeccCCc----------
Confidence 468999999999965555555433 55668888886221 11111 111111111
Q ss_pred cCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccC
Q 000379 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATG 182 (1604)
Q Consensus 142 ~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~ 182 (1604)
..-++|-....+.+.+....-... ++.|.+||||-...
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~ 96 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE 96 (201)
T ss_pred --ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH
Confidence 223555566666666654322222 78999999998754
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=11 Score=44.78 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=60.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEE-ecC-hhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFL-APT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~L-vPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.+++|+|+|||..+..++..+.. ..++ |+++ +++ +.-+.+|........++.+... ....+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~-----~g~~-V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~dp------- 181 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKA-----QGKK-VLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGADP------- 181 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh-----cCCe-EEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCCCH-------
Confidence 458899999999988887766543 2333 4444 444 3333333333333334333221 111110
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCCChHHHHHHHHHhhc----C--CCCcEEEEeccC
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS----D--NKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~~~~~~----~--~~p~iLgLTATP 210 (1604)
.....+.+... ...++++||+|=+-+...+...-..++.+.... + +...+|-|+||-
T Consensus 182 ------------a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 182 ------------ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred ------------HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 01111222211 124578999999877754434333444443211 2 223568899983
|
|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.44 E-value=2.7 Score=53.16 Aligned_cols=88 Identities=15% Similarity=0.005 Sum_probs=64.2
Q ss_pred CCCCCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCC
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDF 119 (1604)
Q Consensus 41 ~~~~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~ 119 (1604)
+....+-.-|..+++..+. +=.|+.+|.|+|||++.+.++..++.........-.++++|=|..-++|.-..+.. .+-
T Consensus 374 ~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~-~qr 452 (1025)
T KOG1807|consen 374 PGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY-HQR 452 (1025)
T ss_pred CCceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh-cCC
Confidence 3445566789999998886 55699999999999999999988886332222334589999999999998877764 233
Q ss_pred cEEEEECCCC
Q 000379 120 EVEEYYGAKG 129 (1604)
Q Consensus 120 ~v~~~~G~~~ 129 (1604)
...+..|+..
T Consensus 453 psImr~gsr~ 462 (1025)
T KOG1807|consen 453 PSIMRQGSRF 462 (1025)
T ss_pred ceEEEecccc
Confidence 4444555543
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=84.33 E-value=4.7 Score=54.68 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 45 IPRIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
--|.-+.+-+-.++ +.|.|+++|+|+|||.++-.++..+.
T Consensus 182 igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 182 IGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 33666666555554 37899999999999999988777654
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=3.2 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|..+++.+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999887764
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=84.02 E-value=2.1 Score=49.23 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=58.1
Q ss_pred HHHHhhc-----cCEE-EEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEEC
Q 000379 53 VFEVAKR-----RNTI-AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYG 126 (1604)
Q Consensus 53 ~l~~~l~-----~n~I-v~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 126 (1604)
.++.+++ +.+. ++++.|+|||..++.++....-.....+...+++|+.-....-.+-..++.+.+++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~------- 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL------- 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-------
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc-------
Confidence 4566664 2333 99999999999988765543211112344567888876555443333333322211
Q ss_pred CCCCCccchhHHHHhcCCCcE-EEEcHHHHHHHHHhc--CcCccceeEEEEeCcccc
Q 000379 127 AKGVDEWDSQCWQKEINKNDV-LVMTPQILLDALRKA--FLSLDIVCFIVIDECHHA 180 (1604)
Q Consensus 127 ~~~~~~~~~~~w~~~~~~~~V-iV~T~q~Ll~~l~~~--~~~l~~i~llI~DEaH~~ 180 (1604)
+ .+..+++..+ -+.+.+.+...+.+- .+.-.+++|||+|-.=..
T Consensus 99 ----~------~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 99 ----D------PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp -----------HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ----c------cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1 0122222222 233455555555431 222357999999987443
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=83.75 E-value=2.9 Score=59.14 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=86.8
Q ss_pred CcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEE
Q 000379 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYY 125 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 125 (1604)
.++-|.+++. ..++|++|.+.-|||||.+.+-.+..++. .......+++|+=|+.-+....+.|+..+.-....
T Consensus 2 ~t~~Q~~ai~-~~~~~~lv~A~AGsGKT~~lv~r~~~~~~---~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-- 75 (1232)
T TIGR02785 2 WTDEQWQAIY-TRGQNILVSASAGSGKTAVLVERIIKKIL---RGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-- 75 (1232)
T ss_pred CCHHHHHHHh-CCCCCEEEEecCCCcHHHHHHHHHHHHHh---cCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc--
Confidence 4678999997 45789999999999999999887766554 11223459999999999988888888765321110
Q ss_pred CCCCCCccchhHHHHhc-CCCcEEEEcHHHHHHHHHhcCcCccce--eEEEEeCcccc-cCCChHHHHHHHHHh
Q 000379 126 GAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIV--CFIVIDECHHA-TGNHPYTKIMKEFYH 195 (1604)
Q Consensus 126 G~~~~~~~~~~~w~~~~-~~~~ViV~T~q~Ll~~l~~~~~~l~~i--~llI~DEaH~~-~~~~~~~~im~~~~~ 195 (1604)
.. ....|...+ .-...-|+|...|...+-+.+...-++ ++=|.||.... .....+..++.++|.
T Consensus 76 ---~p---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~~y~ 143 (1232)
T TIGR02785 76 ---EP---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEEEYY 143 (1232)
T ss_pred ---Cc---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHHHHh
Confidence 01 112233332 235667899988865554433222222 45668887652 122355556665553
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.73 E-value=2.9 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988887763
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.70 E-value=4.3 Score=48.58 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=30.8
Q ss_pred cHHHHHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 47 RIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 47 r~yQ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+|||....+.+.. +-.++.+|.|.|||..|..+++.++
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 6888888877753 4578999999999999988887765
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.8 Score=54.35 Aligned_cols=96 Identities=24% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCHHHHHHHH-HHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCC
Q 000379 395 ISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1604)
Q Consensus 395 ~s~K~~~L~~-lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g 473 (1604)
-+.|-....- ++... ..+.+++|-++++.-|...++.+++.-...++++..++|. ++.++|.++++...+|
T Consensus 292 GSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~------~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 292 GSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGS------LKGKERREILEAIASG 363 (681)
T ss_pred CCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCC------CCHHHHHHHHHHHhCC
Confidence 3566654332 23332 2346899999999999888877776422235889999998 7899999999999999
Q ss_pred CceEEEEcc-ccccccCCCCccEEEE
Q 000379 474 KVNLLFATD-VIEEGMHVPNCSYVIR 498 (1604)
Q Consensus 474 ~~~iLIaT~-vleeGIDip~~nlVI~ 498 (1604)
+.+|+|+|. .+...+.+..+.+||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 999999996 4556677888888774
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=83.65 E-value=5.5 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+..++++|.|+|||..+..++..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45789999999999999888877653
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.57 E-value=3.7 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
...|+++|.|+|||.+|..+++.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 4568999999999999999888764
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=83.36 E-value=7.4 Score=55.91 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhH
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLV 106 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv 106 (1604)
...+.+-|.+++..++. +-++|.+..|+|||.+.-.++.. ++... ...+..++.++||---+
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~-~~~l~-~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSA-VNTLP-ESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH-HHHhh-cccCceEEEECCcHHHH
Confidence 35689999999999885 45689999999999875443332 22111 12334588899994443
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.30 E-value=0.3 Score=56.79 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHHHhhc-cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~-~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.-|.+.|.|+++.+++ .+++.+++||||||-++.++|.++.
T Consensus 23 ~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv 64 (725)
T KOG0349|consen 23 TLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIV 64 (725)
T ss_pred ccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHH
Confidence 3578999999999996 8999999999999999888776654
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.29 E-value=9.2 Score=46.89 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|+.+|.|+|||..|..++..++
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 378999999999999988877654
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=83.22 E-value=4.2 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.2
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.++|+++|+|+|||.+|-.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999988776543
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=3.2 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|++++.|+|||.+|..+++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999888764
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.15 E-value=4.2 Score=52.32 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhc-----cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 48 IYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 48 ~yQ~e~l~~~l~-----~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
++-.+.+..+.. +-.|+++|.|+|||.+|-.+++.+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 22 EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444544442 3368899999999999988877654
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=83.15 E-value=4.4 Score=54.23 Aligned_cols=40 Identities=35% Similarity=0.281 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHhh----ccCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAK----RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 46 pr~yQ~e~l~~~l----~~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
-|+.+.+-+-.++ +.|+|+++|+|+|||.++-.++..+..
T Consensus 186 gr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 186 GREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3555544333333 378999999999999998888777654
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.10 E-value=7.4 Score=46.10 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 44 FIPRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 44 ~~pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+.|||....+.+.+ +-.++.+|.|.||+..|..+++.++
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 4678899988887752 3478999999999999988887765
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=82.92 E-value=2.3 Score=47.91 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhcCcCccceeEEEEeCccccc-CC---ChHHHHHHHHHhhcC-CCCcEEEEecc
Q 000379 151 TPQILLDALRKAFLSLDIVCFIVIDECHHAT-GN---HPYTKIMKEFYHKSD-NKPKVFGMTAS 209 (1604)
Q Consensus 151 T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~-~~---~~~~~im~~~~~~~~-~~p~iLgLTAT 209 (1604)
+...+++.+.+..-. -+|||||+|.+. +. ..+...+..+..... .....+.+++|
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S 164 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGS 164 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEES
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECC
Confidence 444555555543211 689999999998 32 344445555554422 23334556666
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.83 E-value=3.2 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 43 YLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 68999999999999988877654
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=82.81 E-value=4.7 Score=44.95 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=34.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHh-------hCCCCeEEEEEecChhhHHHHHHHHHh
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIK-------SNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~-------~~~~~~~vl~LvPt~~Lv~Q~~~~i~~ 115 (1604)
.|+++.+++|+|||..|..++..+..... .......++|+ +...|.......+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi-d~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF-ELPDALEKIQDAIDN 79 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE-EHHHHHHHHHHHHhc
Confidence 68999999999999999998877542110 11223334444 444676666555443
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=82.61 E-value=6.8 Score=44.22 Aligned_cols=127 Identities=11% Similarity=0.117 Sum_probs=65.9
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCC-CeEEEEEecChhhHHHHHHHHHhhcCC---------cEEEEECCCC
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGF-KKLIIFLAPTVHLVHQQYDVIRVHTDF---------EVEEYYGAKG 129 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~-~~~vl~LvPt~~Lv~Q~~~~i~~~~~~---------~v~~~~G~~~ 129 (1604)
..++|.+++|+|||..+.-++.+.+. . +.+++|++-. +-..+..+.++++ +. ....+.....
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~------~~ge~vlyvs~e-e~~~~l~~~~~s~-g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLK------NFGEKVLYVSFE-EPPEELIENMKSF-GWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH------HHT--EEEEESS-S-HHHHHHHHHTT-TS-HHHHHHTTSEEEEESSGG
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhh------hcCCcEEEEEec-CCHHHHHHHHHHc-CCcHHHHhhcCCEEEEecccc
Confidence 44789999999999999888877665 2 3447777753 4445566666532 22 1222221111
Q ss_pred CCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCccccc---CCChHHHHHHHHHhhcCCCCcEEEE
Q 000379 130 VDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT---GNHPYTKIMKEFYHKSDNKPKVFGM 206 (1604)
Q Consensus 130 ~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~~~im~~~~~~~~~~p~iLgL 206 (1604)
...|. -...+.+...+.... .-...+.+|+|-...+. ....+...+..++......--...+
T Consensus 92 ~~~~~--------------~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ll 156 (226)
T PF06745_consen 92 RIGWS--------------PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLL 156 (226)
T ss_dssp GST-T--------------SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccc--------------ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 11000 123444444433211 11123799999887772 2223455555555444334445556
Q ss_pred ecc
Q 000379 207 TAS 209 (1604)
Q Consensus 207 TAT 209 (1604)
|+.
T Consensus 157 t~~ 159 (226)
T PF06745_consen 157 TSE 159 (226)
T ss_dssp EEE
T ss_pred EEc
Confidence 655
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=2.3 Score=50.85 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=27.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecCh
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~ 103 (1604)
+.|+++.|+|||..+..++..........+...+++|+.---
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 459999999999988776554322111123345688888744
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=82.39 E-value=16 Score=41.17 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=30.0
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~ 112 (1604)
..+++.+++|+|||..+..++.+.+. .+..++++.-- .-..+..+.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~e-~~~~~i~~~ 66 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTTE-ESRESIIRQ 66 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEcc-CCHHHHHHH
Confidence 55789999999999988877766544 23346666642 333444433
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=82.34 E-value=6.6 Score=57.89 Aligned_cols=58 Identities=19% Similarity=0.012 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHhhc---cCEEEEeCCCChHHHHHHHH---HHHHHHHHhhCCCCeEEEEEecChhh
Q 000379 43 NFIPRIYQLKVFEVAKR---RNTIAVLETGAGKTMIAVML---IKDIAQAIKSNGFKKLIIFLAPTVHL 105 (1604)
Q Consensus 43 ~~~pr~yQ~e~l~~~l~---~n~Iv~~~TGsGKTliaill---i~~~~~~~~~~~~~~~vl~LvPt~~L 105 (1604)
...+.+-|.+++..++. +-++|.+..|+|||.+...+ +.+.++ ..+..++.++||-.-
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-----~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-----SEQLQVIGLAPTHEA 1080 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-----hcCCeEEEEeChHHH
Confidence 35789999999999874 34578899999999876332 333332 134568889999443
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=82.22 E-value=2.4 Score=56.90 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=65.6
Q ss_pred CCcHHHHHHHHHhhccCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEE
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEY 124 (1604)
Q Consensus 45 ~pr~yQ~e~l~~~l~~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 124 (1604)
.+.+-|.+++.. ..++++|.|..|||||.+.+..|.+++... .-...++|+++=|+.-+....+.+.+.++-
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 4 HLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred ccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 478899999875 368899999999999999999988887521 112345999999988888888877765421
Q ss_pred ECCCCCCccchhHHHHhcCCCcEEEEcHHHHHHH
Q 000379 125 YGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDA 158 (1604)
Q Consensus 125 ~G~~~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~ 158 (1604)
. ..++.|+|...|...
T Consensus 76 ------~------------~~~~~i~TFHs~~~~ 91 (726)
T TIGR01073 76 ------V------------AEDIWISTFHSMCVR 91 (726)
T ss_pred ------c------------cCCcEEEcHHHHHHH
Confidence 0 235778998877443
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.10 E-value=6.9 Score=44.30 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=63.7
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHhhcCCcEEEEECCCCCCccchhHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~w~ 139 (1604)
+.+++++|.|+||++.|-.++-+. . ..+|-+-+..||..|..+-.+.. .
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA---------n-STFFSvSSSDLvSKWmGESEkLV---------------------k 215 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA---------N-STFFSVSSSDLVSKWMGESEKLV---------------------K 215 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc---------C-CceEEeehHHHHHHHhccHHHHH---------------------H
Confidence 568999999999999876654431 2 47999999899988876533210 0
Q ss_pred HhcCCCcEEEEcHHHHHHHHHhcCcCccceeEEEEeCcccccCC------ChHHHHHHHHHhhcC----CCCcEEEEecc
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGN------HPYTKIMKEFYHKSD----NKPKVFGMTAS 209 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~~~------~~~~~im~~~~~~~~----~~p~iLgLTAT 209 (1604)
.|..+-+ -..-++|.+||++.+.+. ..-++|-.+|+-+.. ..--+|-|-||
T Consensus 216 --------------nLFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 216 --------------NLFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred --------------HHHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 0111111 134578999999988743 345777778876542 23445555555
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.06 E-value=8.7 Score=45.65 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHhhc--------cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 46 PRIYQLKVFEVAKR--------RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 46 pr~yQ~e~l~~~l~--------~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
..|||...++.+.+ +-.++.+|.|.||+..|..+++.++
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 46788877776642 3467999999999999999887765
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=82.00 E-value=3.9 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.2
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
+++++++|+|+|||++|-.+..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHH
Confidence 56899999999999988776544
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=81.96 E-value=10 Score=50.26 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHhhCCCCCcEEEEEEchHHHHHHHHHHHhhCCCCCCeeEEEEEcCCCCCCCCCHHHHHHHHHHHhCCCc
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~lL~~~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~m~~~~r~~vl~~Fr~g~~ 475 (1604)
+.|-...+..+.... ..+.++||.++++.-+..+.+.|++. -+..+..+||. ++..+|.+...+.++|+.
T Consensus 173 SGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~v~~~~s~------~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 173 SGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR---FGAPVAVLHSG------LSDGERLDEWRKAKRGEA 242 (679)
T ss_pred ChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCCEEEEECC------CCHHHHHHHHHHHHcCCC
Confidence 567766655544332 12458999999999999888888763 14578889998 789999999999999999
Q ss_pred eEEEEccccccccCCCCccEEEEcC
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFD 500 (1604)
Q Consensus 476 ~iLIaT~vleeGIDip~~nlVI~fD 500 (1604)
+|+|+|..+-- +.+.+..+||.-+
T Consensus 243 ~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 243 KVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CEEEeccHHhc-ccccCCCEEEEEC
Confidence 99999974432 4566778877544
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=81.93 E-value=6.4 Score=47.82 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHhhc------cCEEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH
Q 000379 51 LKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR 114 (1604)
Q Consensus 51 ~e~l~~~l~------~n~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~ 114 (1604)
..-|+.+++ .=+++.+++|+|||..++.++..+.. .+.+++|+.-. +-..|.....+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECC-cCHHHHHHHHH
Confidence 345666664 23578999999999998887766654 23458887754 33455544433
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=81.86 E-value=7.6 Score=47.13 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.0
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
-.|+.+|.|+||+..|..+++.++-
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4789999999999999999888763
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=81.75 E-value=4.3 Score=50.68 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHH-hhcCCcEEEE-ECCCCCCccch-hHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR-VHTDFEVEEY-YGAKGVDEWDS-QCW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~-~~~~~~v~~~-~G~~~~~~~~~-~~w 138 (1604)
++|.+++|+|||..++.++.+... ..+..|+|+.-- -=..|....+- ...++....+ .|....+.|.. ..+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~-----~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 270 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVAL-----REGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNA 270 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 578899999999999988877642 123447777632 22344444332 2344433222 23322223321 112
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|. |.+.+...+++-......+++||+|=.|.+.
T Consensus 271 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 222334445553 3344443333211111257788888777664
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.59 E-value=4.4 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.4
Q ss_pred cCEEEEeCCCChHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
.++|+++|+|+|||..|-.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999988776543
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=3.5 Score=51.95 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=58.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCeEEEEEecChhhHHHHHHHHHh-hcCCcEEEE-ECCCCCCccchh-HH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-HTDFEVEEY-YGAKGVDEWDSQ-CW 138 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~~~~~~~~~~~~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~-~G~~~~~~~~~~-~w 138 (1604)
+||.+.||.|||..++-++.+... .+..|+|+..- -=..|....+-. ..++....+ .|....+.|..- ..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 267 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDA 267 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 578899999999999888877643 23346666543 234555555433 344433222 243333344311 11
Q ss_pred HHhcCCCcEEEE-----cHHHHHHHHHhcCcCccceeEEEEeCccccc
Q 000379 139 QKEINKNDVLVM-----TPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 139 ~~~~~~~~ViV~-----T~q~Ll~~l~~~~~~l~~i~llI~DEaH~~~ 181 (1604)
...+.+..+.|- |...+...+++-.-....+++||+|=.+.+.
T Consensus 268 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 268 CDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 122233444442 4444544433211112347788888776554
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=81.05 E-value=5.3 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.5
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~~ 84 (1604)
.|+++|.|+|||.+|-.+++.+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 78999999999999998887764
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.61 E-value=5.5 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred cCEEEEeCCCChHHHHHHHHHHHHH
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~~ 84 (1604)
+.+|+.+|.|+|||..|..+++.+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3489999999999999999888765
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=3.7 Score=54.47 Aligned_cols=27 Identities=44% Similarity=0.471 Sum_probs=22.2
Q ss_pred ccCEEEEeCCCChHHHHHHHHHHHHHH
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~~~ 85 (1604)
+.|.|+++|+|+|||.++-.+......
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 378999999999999998877665543
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=80.50 E-value=2.7 Score=47.58 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHhhc--CCcEEEEECCC-CCCccchhHHHHhcCCCcEEEEcHHHHHHHHHhcCcCcc
Q 000379 91 GFKKLIIFLAPTVHLVHQQYDVIRVHT--DFEVEEYYGAK-GVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLD 167 (1604)
Q Consensus 91 ~~~~~vl~LvPt~~Lv~Q~~~~i~~~~--~~~v~~~~G~~-~~~~~~~~~w~~~~~~~~ViV~T~q~Ll~~l~~~~~~l~ 167 (1604)
.+.+.++||+..--=+-...+.++.+- +..|..++.-. .++. +...-.-...+|.|+||+++..++..+.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~e---qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEE---QVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHH---HHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 345678888887444555555555442 12333333221 1211 11111123689999999999999999999999
Q ss_pred ceeEEEEeCccccc
Q 000379 168 IVCFIVIDECHHAT 181 (1604)
Q Consensus 168 ~i~llI~DEaH~~~ 181 (1604)
++..||+|--|.=.
T Consensus 201 ~l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 201 NLKRIVLDWSYLDQ 214 (252)
T ss_pred cCeEEEEcCCcccc
Confidence 99999999877543
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=80.27 E-value=11 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=18.2
Q ss_pred EEEEeCCCChHHHHHHH-HHHHHHH
Q 000379 62 TIAVLETGAGKTMIAVM-LIKDIAQ 85 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliail-li~~~~~ 85 (1604)
.++.+..|||||+-++. .|...+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 46889999999999886 4554443
|
|
| >KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.09 E-value=1.4 Score=54.79 Aligned_cols=182 Identities=15% Similarity=0.072 Sum_probs=94.4
Q ss_pred CchHHHHHHHHh-cCCcc-----eeeeeeeCce--EEEEEEEEEcCeEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhc
Q 000379 1372 PPLRELIELCDS-LGYFV-----KENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEKRI 1443 (1604)
Q Consensus 1372 ~p~~~L~e~~~~-~~~~~-----~~~~~~~g~~--~~~~v~v~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 1443 (1604)
+|-..+..+-++ ++... |..+...|+. +.|+.+|.+++..+. ..|.|++.|+..||++.|+....
T Consensus 371 d~nak~mhl~grRhrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~--a~gps~~~~~wh~~~k~lq~~~~----- 443 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRHRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE--AEGPSKKTAKWHAARKRLQNEGR----- 443 (816)
T ss_pred CcchHHhhhhcccccceeccccCCCceeccCCcccchhhhhhhhcCCccc--cCCcccccchHHHHHHHhhccCC-----
Confidence 444555555442 33221 2455666776 569999999997554 56999999999999988776532
Q ss_pred ccCCCCCCcCCCccccCCCCCCCCCcccccccCcccccc--CCCcccccccccC------CCccccccccccCCchhhHH
Q 000379 1444 SKGASNTGKLGDDCRQTTKEDLPEPPSCKRQKGTEAAIP--AGDSCKKAYCMTV------GTPVVAPINMKKGGPRTSLF 1515 (1604)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~k~~L~ 1515 (1604)
..++.. .+.+...+ +-+.+.++....++. ....+..+..-.. .......++-..+++...|+
T Consensus 444 p~ga~~--r~~~~ge~--------~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~ 513 (816)
T KOG3792|consen 444 PTGAAQ--RFGRMGED--------PASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELA 513 (816)
T ss_pred Cccccc--cccccCCC--------cccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHh
Confidence 001110 01110000 000010000000000 0000000000000 00112223333566777777
Q ss_pred HHHHhCCCCCCceeEeecccccccccccC-CcccccceeeEEEEEEEecCCceEEEeCCCCCCccchhhhHHHHHHHHH
Q 000379 1516 QLCKTMLWPMPTFETTESKSRTLLVFCEG-LEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIMLHEL 1593 (1604)
Q Consensus 1516 e~~~~~~~~~P~y~~~~~~~~~~~~~~~G-p~h~~~~~~F~~~v~~~~~~~~~~~~~g~~~ssKK~A~~~AA~~~l~~l 1593 (1604)
|- ++. -+||+..+ .| -+|. +.|+..|.+-.. ...|.+ .+||-|++.||.-++..+
T Consensus 514 Ek---~rg--~k~El~se---------t~~gs~~---~R~v~gV~rvG~-----~akG~~-~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 514 EK---RRG--DKYELPSE---------TGTGSHD---KRFVKGVMRVGI-----LAKGLL-LNGDRAVELALLCAEKPT 569 (816)
T ss_pred hh---ccc--cceecccc---------cCCCCCC---ceeeeeeeeeeh-----hhcccc-ccchHHHHHHHHhccCcc
Confidence 73 222 27998777 45 8898 899988887322 344544 779999999998887543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1604 | ||||
| 4a2w_A | 936 | Structure Of Full-Length Duck Rig-I Length = 936 | 4e-27 | ||
| 4a2q_A | 797 | Structure Of Duck Rig-I Tandem Cards And Helicase D | 7e-27 | ||
| 4a2p_A | 556 | Structure Of Duck Rig-I Helicase Domain Length = 55 | 2e-26 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 9e-25 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 3e-24 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 5e-24 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 3e-23 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 6e-17 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 1e-05 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 1e-15 | ||
| 3tbk_A | 555 | Mouse Rig-I Atpase Domain Length = 555 | 7e-10 | ||
| 2kou_A | 102 | Dicer Like Protein Length = 102 | 1e-13 | ||
| 3b6e_A | 216 | Crystal Structure Of Human Dech-Box Rna Helicase Md | 5e-10 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 3e-06 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 4e-06 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 7e-06 | ||
| 2eb1_A | 200 | Crystal Structure Of The C-Terminal Rnase Iii Domai | 9e-06 | ||
| 3c4t_A | 265 | Structure Of Rnaseiiib And Dsrna Binding Domains Of | 1e-05 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-05 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 3e-05 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 4e-05 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 4e-05 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 4e-05 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-05 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 5e-05 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 5e-05 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 2e-04 | ||
| 3n3w_A | 248 | 2.2 Angstrom Resolution Crystal Structure Of Nuclea | 2e-04 | ||
| 3o2r_A | 170 | Structural Flexibility In Region Involved In Dimer | 2e-04 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 2e-04 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 2e-04 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-04 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-04 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 7e-04 |
| >pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I Length = 936 | Back alignment and structure |
|
| >pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain Length = 797 | Back alignment and structure |
|
| >pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain Length = 556 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain Length = 555 | Back alignment and structure |
|
| >pdb|2KOU|A Chain A, Dicer Like Protein Length = 102 | Back alignment and structure |
|
| >pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5 (Melanoma Differentiation-Associated Protein 5), Dech-Domain Length = 216 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 | Back alignment and structure |
|
| >pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 | Back alignment and structure |
|
| >pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 334 bits (857), Expect = e-101
Identities = 123/518 (23%), Positives = 214/518 (41%), Gaps = 25/518 (4%)
Query: 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
PR YQL++ A K +NTI TG GKT +++++ + + K ++F A
Sbjct: 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGK-VVFFAN 60
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + QQ V + + + + DS Q I ND++++TPQIL++ L
Sbjct: 61 QIPVYEQQATVFSRYFER-LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN 119
Query: 162 AFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYH-----KSDNKPKVFGMTASPVVRKG 215
+ SL + ++ DECH+ + NHPY +IM + D P+V G+TAS
Sbjct: 120 GAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVG-VGD 178
Query: 216 VSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFY-----DQSKFCGS 268
+A + I +L + LD+ V ++ E+E V ++ R + K S
Sbjct: 179 AKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L + E L KL Q + + + + ++ +E +
Sbjct: 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCK 298
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSL--QCKYFLEEVLHVIGSALP--LADKIFLDFGF 384
A L K A E + + K F +V L +
Sbjct: 299 ALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEE 358
Query: 385 DYSKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
+ D + KL +L + + + I+FV+ +++++++ P L+ L
Sbjct: 359 LEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL 418
Query: 444 TVAYLTG--STTSVDALTPKVQKEVLESFR-GGKVNLLFATDVIEEGMHVPNCSYVIRFD 500
LTG T +T QK VLE+FR G N+L AT V +EG+ + C+ VI ++
Sbjct: 419 KPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478
Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLF 538
V IQ+RGR R +S+ L+ ++ ++ K
Sbjct: 479 YVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKAN 516
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = 3e-99
Identities = 119/518 (22%), Positives = 224/518 (43%), Gaps = 23/518 (4%)
Query: 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
R YQ+++ + A +N + TG+GKT +++++ + Q + + K ++FLA
Sbjct: 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAK-VVFLAT 63
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
V + QQ +V + H + + G G + + + +K I +D++V+TPQIL+++
Sbjct: 64 KVPVYEQQKNVFKHHFERQGYSVQGISG-ENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
Query: 162 AFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNK----PKVFGMTASPVVRKGV 216
L SL I ++ DECH+ TGNHPY +M + + N P++ G+TAS
Sbjct: 123 GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG-VGNA 181
Query: 217 SSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQSKF-CGSDLKGK 273
+ + I L S LD Q + E+ E++ F+ + R + + +
Sbjct: 182 KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241
Query: 274 LEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAV 333
L ++ + N KD ++ ++ ++L D+ A+
Sbjct: 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 301
Query: 334 KICLEKVLKAQEECEIYRQSSL-----QCKYFLEEVLHVIGSALP--LADKIFLDFGFDY 386
IC E + K + I + + F V + + L L K
Sbjct: 302 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELI 361
Query: 387 SKAVDLGYISTKLHELLQ-LFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTV 445
+ + D + KL EL+ L ++ + Q ++F + +++ +++ P L ++
Sbjct: 362 ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 421
Query: 446 AYLTG--STTSVDALTPKVQKEVLESFRGGKVN-LLFATDVIEEGMHVPNCSYVIRFDLP 502
L G +T QK VL++F+ K N LL AT V +EG+ + C+ V+ ++
Sbjct: 422 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481
Query: 503 KTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDI 540
V+ IQ RGR R S+ IL+ + + + K
Sbjct: 482 GNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRY 519
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 321 bits (823), Expect = 6e-97
Identities = 122/508 (24%), Positives = 204/508 (40%), Gaps = 31/508 (6%)
Query: 44 FIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
PRIYQ ++ K N + VL TG GKT+IA+M+ + + ++ LAPT
Sbjct: 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTK 62
Query: 104 HLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAF 163
LV Q + R + E+ G + K + V+V TPQ + + L
Sbjct: 63 PLVLQHAESFRRLFNLPPEKIVALTGEKSPEE--RSKAWARAKVIVATPQTIENDLLAGR 120
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
+SL+ V IV DE H A GN+ Y I +E+ ++ P V G+TASP
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA-KNPLVIGLTASPGSTPE-------- 171
Query: 224 GQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDA 283
+I E+ + L + IE ++E V + RF K ++
Sbjct: 172 -KIMEVINNLGIE--HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRD 228
Query: 284 SLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKA 343
+L L + L D K + + + ++ +L + Y A+ + K+ A
Sbjct: 229 ALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMAL---KLHHA 285
Query: 344 QEECEIYRQSSLQ--CKYFLEEVLHVIGSALP--LADKIFLDFGFDYSKAVDLGYISTKL 399
E E S+L+ K EE A +DK +A ++G K+
Sbjct: 286 IELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKM 345
Query: 400 HELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDAL 458
+L ++ + I+F AK + + K V S + L
Sbjct: 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ--ASKENDRGL 403
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-ARQ 517
+ + QK +L+ F G+ N+L AT V EEG+ VP V+ ++ + IQ RGR R
Sbjct: 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463
Query: 518 HNSQFILMLERGNLKQRNKLFDIIRSER 545
+ I+++ +G + + + E+
Sbjct: 464 MPGRVIILMAKGT-RDEAYYWSSRQKEK 490
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 321 bits (823), Expect = 1e-94
Identities = 135/622 (21%), Positives = 245/622 (39%), Gaps = 46/622 (7%)
Query: 43 NFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP 101
F PR YQL++ A K +NTI TG GKT +++++ + + K ++F A
Sbjct: 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFAN 69
Query: 102 TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
+ + Q V + + G G ++ ++ + ND++++TPQIL++ L+K
Sbjct: 70 QIPVYEQNKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDIIILTPQILVNNLKK 128
Query: 162 AFL-SLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-----SDNKPKVFGMTASPVVRKG 215
+ SL I ++ DECH+ + HPY IM + + S P+V G+TAS
Sbjct: 129 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG-VGD 187
Query: 216 VSSAMDCEGQISELESTLDSQVFTI--EDKTEMEVFVPSAKESCRFYDQS-----KFCGS 268
+ + I +L ++LD+ V + E+E V ++ R + K+ +
Sbjct: 188 AKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 247
Query: 269 DLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKILYCLDELGLIC 328
L E + L L Q + + + Q + ++ +E +
Sbjct: 248 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 307
Query: 329 AYEAVKICLEKVLKAQEECEIYRQSSLQ--CKYFLEEVLHVIGSALP--LADKIFLDFGF 384
A L K A E R K F V + L +
Sbjct: 308 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 367
Query: 385 DYSKAVDLGYISTKLHELLQLFLS-FGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL 443
S + D + KL +L + + + + + I+FV+ ++ +++ P L+ L
Sbjct: 368 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 427
Query: 444 TVAYLTG--STTSVDALTPKVQKEVLESFRG-GKVNLLFATDVIEEGMHVPNCSYVIRFD 500
LTG T +T QK +L++F+ G N+L AT V +EG+ + C+ VI ++
Sbjct: 428 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 487
Query: 501 LPKTVSSYIQSRGRARQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACF 560
V IQ+RGR R S+ L+ + ++ ++ + + L EA F
Sbjct: 488 YVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 547
Query: 561 LKACTYVKTKSYIV---ESTGASVTTDSSVNLIHRYCEML----------PSDKYYTPKP 607
+ +++T + + V + L+ R C+ L Y
Sbjct: 548 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLGD 607
Query: 608 IFKYKSAEEAYECELTLPSNAP 629
FK EC ++ P P
Sbjct: 608 AFK--------ECFVSRPHPKP 621
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 318 bits (814), Expect = 2e-92
Identities = 120/545 (22%), Positives = 228/545 (41%), Gaps = 25/545 (4%)
Query: 15 VHSPNPPDMGSSGHDHAVDGPSSST--NSINFIPRIYQLKVFEVA-KRRNTIAVLETGAG 71
PD S + + R YQ+++ + A +N + TG+G
Sbjct: 216 YSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSG 275
Query: 72 KTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD 131
KT +++++ + Q + + K ++FLA V + QQ +V + H + + G G +
Sbjct: 276 KTFVSILICEHHFQNMPAGRKAK-VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG-E 333
Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDAL-RKAFLSLDIVCFIVIDECHHATGNHPYTKIM 190
+ + +K I +D++V+TPQIL+++ SL I ++ DECH+ TGNHPY +M
Sbjct: 334 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393
Query: 191 KEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKT 244
+ + N P++ G+TAS + + I L S LD Q + E+
Sbjct: 394 TRYLEQKFNSASQLPQILGLTASVG-VGNAKNIEETIEHICSLCSYLDIQAISTVRENIQ 452
Query: 245 EMEVFVPSAKESCRFYDQSKFCG-SDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH 303
E++ F+ + R + + + L ++ + N KD ++
Sbjct: 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQN 512
Query: 304 KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYR-QSSLQCKYFLE 362
++ ++L D+ A+ IC E + K + I + +L
Sbjct: 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT 572
Query: 363 EVLHVIGSALPLADKIFLDFGFD------YSKAVDLGYISTKLHELLQ-LFLSFGKSTQV 415
E + + + L F + + D + KL EL+ L ++ + Q
Sbjct: 573 EFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632
Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRGG 473
++F + +++ +++ P L ++ L G +T QK VL++F+
Sbjct: 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692
Query: 474 KVN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
K N LL AT V +EG+ + C+ V+ ++ V+ IQ RGR R S+ IL+ + +
Sbjct: 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVV 752
Query: 533 QRNKL 537
+ K
Sbjct: 753 ENEKC 757
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 316 bits (809), Expect = 1e-90
Identities = 130/612 (21%), Positives = 246/612 (40%), Gaps = 29/612 (4%)
Query: 15 VHSPNPPDMGSSGHDHAVDGPSSST--NSINFIPRIYQLKVFEVA-KRRNTIAVLETGAG 71
PD S + + R YQ+++ + A +N + TG+G
Sbjct: 216 YSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSG 275
Query: 72 KTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVD 131
KT +++++ + Q + + K ++FLA V + QQ +V + H + + G G +
Sbjct: 276 KTFVSILICEHHFQNMPAGRKAK-VVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG-E 333
Query: 132 EWDSQCWQKEINKNDVLVMTPQILLDALRKAFL-SLDIVCFIVIDECHHATGNHPYTKIM 190
+ + +K I +D++V+TPQIL+++ L SL I ++ DECH+ TGNHPY +M
Sbjct: 334 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393
Query: 191 KEFYHKSDNK----PKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTI--EDKT 244
+ + N P++ G+TAS V + + I L S LD Q + E+
Sbjct: 394 TRYLEQKFNSASQLPQILGLTASVGVGN-AKNIEETIEHICSLCSYLDIQAISTVRENIQ 452
Query: 245 EMEVFVPSAKESCRFYDQSKF-CGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKH 303
E++ F+ + R + + + L +++ + N KD ++
Sbjct: 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQN 512
Query: 304 KTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSL-----QCK 358
++ ++L D+ A+ IC E + K + I + +
Sbjct: 513 YEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT 572
Query: 359 YFLEEVLHVIGSALP--LADKIFLDFGFDYSKAVDLGYISTKLHELLQ-LFLSFGKSTQV 415
F V + + L L K + + D + KL EL+ L ++ + Q
Sbjct: 573 EFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632
Query: 416 LCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTG--STTSVDALTPKVQKEVLESFRGG 473
++F + +++ +++ P L ++ L G +T QK VL++F+
Sbjct: 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692
Query: 474 KVN-LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILMLERGNLK 532
K N LL AT V +EG+ + C+ V+ ++ V+ IQ RGR R S+ IL+ + +
Sbjct: 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVV 752
Query: 533 QRNKLFDII-RSERSVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVT---TDSSVN 588
+ K + D E K + + +S + + N
Sbjct: 753 ENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKN 812
Query: 589 LIHRYCEMLPSD 600
L+ C+
Sbjct: 813 LLCGKCKAYACS 824
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 2e-63
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 23/209 (11%)
Query: 21 PDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVML 79
MGS + V +S R YQ++V + A + +N I L TG+GKT +AV +
Sbjct: 11 GTMGSDSDEENVAARASPEP--ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI 68
Query: 80 IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139
KD K +I L V LV Q + + G G D +
Sbjct: 69 AKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG-DTQLKISFP 127
Query: 140 KEINKNDVLVMTPQILLDAL------RKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEF 193
+ + D+++ T QIL ++L A + L I+IDECHH Y IM+ +
Sbjct: 128 EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187
Query: 194 YHKSDNK-------------PKVFGMTAS 209
+ P++ G+TAS
Sbjct: 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216
|
| >2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Length = 102 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-34
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 581 VTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE--AYECELTLPSNAPFQTIVGPTS 638
++ SS++++++YC LP D+++ PKP F++K +E C +TLP+NAP I
Sbjct: 1 ISGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLL 60
Query: 639 RNKNLSKQLVCLEACEKLHQVGALNDHLLPSVEEPSE 675
+ +K+ CL+A +LH +G LND LLP ++ E
Sbjct: 61 PSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIE 97
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 72/261 (27%)
Query: 1245 RSYVPRINEIKDIESKIGYEFTVKFLLQEAITHASVQ-----------EF---------- 1283
++ I+ + E KI Y F K L +A THAS EF
Sbjct: 6 KTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLI 65
Query: 1284 --YCYQ------------------------------NLYKHLQHCSTLLLSQITEYVKS- 1310
+ Y+ + +K+ + S L I ++VK
Sbjct: 66 TKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQ 125
Query: 1311 ------------FPKPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKP 1358
+ E + ++ PKA+GD+ ES+ GA+ +D+ ++L+ VW+++ P
Sbjct: 126 LEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYP 185
Query: 1359 ILSPIVTPDKLELP--PLRELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEG 1416
++ P++ +P P+REL+E+ F T G+ V + + K G G
Sbjct: 186 MMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-VRVTVEVVGK-GKFKGVG 243
Query: 1417 QERSRKAAKGKAASQLLKKLE 1437
RS + AK AA + L+ L+
Sbjct: 244 --RSYRIAKSAAARRALRSLK 262
|
| >3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-20
Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 21/190 (11%)
Query: 1029 PSVMQRLESLMLA-SQLREEINCHSRNFHIPSSLILEALT---TLGCCESFSMERLELLG 1084
P + L L+ ++IN +N + +L+A T + +RLE LG
Sbjct: 2 PDAEKTLNHLISGFETFEKKINYRFKN----KAYLLQAFTHASYHYNTITDCYQRLEFLG 57
Query: 1085 DSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRW 1144
D++L Y ++ HL+ + G L+ RS V N+ L Y +
Sbjct: 58 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK--------- 108
Query: 1145 VAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEAL 1204
+L + + + + K + D E+L
Sbjct: 109 AVSPELFHVIDDFVKFQLEKNEMQGMDSELRRS----EEDEEKEEDIEVPKAMGDIFESL 164
Query: 1205 IGAYYVGGGL 1214
GA Y+ G+
Sbjct: 165 AGAIYMDSGM 174
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-26
Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)
Query: 893 DVIHLANGSVDAKN----LKDMVVLAIH-TGRIYSIVEIVNNSSAESPFDGNTDDDSKTF 947
D L++ D L +V + +Y ++ I + ++ S F ++S T+
Sbjct: 138 DAKRLSDEYTDYSTLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYF--TRANESITY 195
Query: 948 VNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHM 1007
+ Y++ + I L PL+ + + + + + P++ +
Sbjct: 196 MRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPGSW----------DDLAPKLR-FL 244
Query: 1008 PPELLVRVDVPISVVK--SLYLLPSVMQRLESL-MLASQLREEINCHSR-----NFHIPS 1059
PPEL + + +++ +L LP + + + + L + R F I +
Sbjct: 245 PPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGGERYFAITA 304
Query: 1060 SLILE------------ALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQ 1107
L L+ G + +RLELLGD+VL + V+ L +P G
Sbjct: 305 GLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGT 364
Query: 1108 LSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
L + V N L+ L L S
Sbjct: 365 LVELKMELVRNEALNYLVQTLGLPQLAEFS 394
|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-15
Identities = 36/181 (19%), Positives = 56/181 (30%), Gaps = 55/181 (30%)
Query: 1039 MLASQLREEINCHSRNFHIPS--SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHL 1096
+ A + + + IP L+ ALT ++LELLGD+ LK +++ HL
Sbjct: 613 IAAQTVSRSLAVPIPSGTIPFLIRLLQIALT------PHVYQKLELLGDAFLKCSLALHL 666
Query: 1097 FLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVP 1156
+P EG L+ R A NS L +L ++ +
Sbjct: 667 HALHPTLTEGALTRMRQSAETNSVLGRLT--KRFPSVVS--------------------- 703
Query: 1157 CECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIA 1216
SK D EA++ A + G A
Sbjct: 704 ------------------------EVIIESHPKIQPDSKVYGDTFEAILAAILLACGEEA 739
Query: 1217 A 1217
A
Sbjct: 740 A 740
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 41/232 (17%)
Query: 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNT-IAVLETGAGKTMIAVMLIKDIAQAI 87
D+A D + R YQ K E VL TG+GKT +A+ I ++
Sbjct: 77 DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---- 132
Query: 88 KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
+ + PT+ L Q + + + + V E+ G + +
Sbjct: 133 -----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG-------------RIKELKPL 174
Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
V T K ++ DE HH Y +I + P G+T
Sbjct: 175 TVSTYDSAYVNAEKLGNRFM---LLIFDEVHHLPAES-YVQIAQMS-----IAPFRLGLT 225
Query: 208 ASPVVRKGVSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRF 259
A+ R+ +G+ L+ + +VF + + + F
Sbjct: 226 ATF-ERE--------DGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIF 268
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 30/221 (13%)
Query: 305 TLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLK-AQEECEIYRQSSLQCKYFLEE 363
+ L + ++ L L + A + A++E Y + K FL
Sbjct: 233 GRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292
Query: 364 VLHVIGSALPLADKIFLDFGFDYSKAVDLGYI---------STKLHELLQLFLSFGKSTQ 414
+ A + + + + K+ +L ++ K
Sbjct: 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD-- 350
Query: 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474
IIF + + + +T T+ + ++E+LE FR G+
Sbjct: 351 -KIIIFTRHNELVYRISK---------VFLIPAITHRTSR------EEREEILEGFRTGR 394
Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLP-KTVSSYIQSRGR 514
+ ++ V++EG+ VP+ + + + YIQ GR
Sbjct: 395 FRAIVSSQVLDEGIDVPDANVGV-IMSGSGSAREYIQRLGR 434
|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-15
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 21/130 (16%)
Query: 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 964
K L ++VL + + Y + +I + + +S F D +F+ Y+ ++Y + Q
Sbjct: 27 KELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKA-DGSEVSFLEYYRKQYNQEITDLKQ 85
Query: 965 PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1024
P+L + + + PEL + +
Sbjct: 86 PVLV--------------------SQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND 125
Query: 1025 LYLLPSVMQR 1034
++ +
Sbjct: 126 FNVMKDLAVH 135
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 33/187 (17%)
Query: 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNT-IAVLETGAGKTMIAVMLIKDIAQAI 87
D+A D + R YQ K E VL TG+GKT +A+ I ++
Sbjct: 77 DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---- 132
Query: 88 KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
+ + PT+ L Q + + + + V E+ G + +
Sbjct: 133 -----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG-------------RIKELKPL 174
Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
V T K ++ DE HH Y +I + G+T
Sbjct: 175 TVSTYDSAYVNAEKLGNRFM---LLIFDEVHHLPAES-YVQIAQMSIAPF-----RLGLT 225
Query: 208 ASPVVRK 214
A+ R+
Sbjct: 226 ATF-ERE 231
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 8e-15
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 50 QLKVFEVA--KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
Q + + + + TG+GKT+IA M I + NG K I++ P L +
Sbjct: 35 QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGI---ISFLLKNGGK--AIYVTPLRALTN 89
Query: 108 QQYDVIRV--HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
++Y + F+V G D + D+++ T + L R
Sbjct: 90 EKYLTFKDWELIGFKVAMTSG-------DYDTDDAWLKNYDIIITTYEKLDSLWRHRPEW 142
Query: 166 LDIVCFIVIDECH 178
L+ V + V+DE H
Sbjct: 143 LNEVNYFVLDELH 155
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 37/197 (18%), Positives = 53/197 (26%), Gaps = 65/197 (32%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
ERLE LGDS L VS ++ +P +EG LS + V N+ L T ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ-- 187
Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKT 1196
+ SK
Sbjct: 188 -------------------------------------------GNIATPTRVVKDKMSKR 204
Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWLGIDADLEVSLVDDCITRASLRSYVPRINEIKD 1256
ADC EA IGA + L + +WL ++ +
Sbjct: 205 YADCVEAYIGALVIDRFGTEFLDIKEWL-------------------EELSEKKLAKSSQ 245
Query: 1257 IESKIGYEFTVKFLLQE 1273
+ K K L E
Sbjct: 246 MVIKEPLNKNAKNELAE 262
|
| >3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 67/250 (26%)
Query: 1252 NEIKDIESKIGY-EFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLS-------- 1302
+ D++ I Y + L A H S + N+ HL LS
Sbjct: 83 DSNTDVDMFIKYPVVYDENLENLAFMHKS------FPNMNAHLNDAQKTQLSNERLEFLG 136
Query: 1303 ------QITEYV-KSFPK-----------------------------------PGETTDS 1320
++ V FP T
Sbjct: 137 DSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRV 196
Query: 1321 GPSMKAPKALGDLLESIVGAVLID-TKLNLDEVW----RIFKPILSPIVTPDKLELPPL- 1374
K K D +E+ +GA++ID ++ + + L+ E
Sbjct: 197 VKD-KMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKN 255
Query: 1375 --RELIELCDSLGYFVKENCTLKGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQL 1432
EL EL K + EM + +++ D+LL E + S + A+ +AA ++
Sbjct: 256 AKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILL-DEAEGNSIREAEHRAAMKV 314
Query: 1433 LKKLEVCEKR 1442
L+ E+ K
Sbjct: 315 LENDELLRKY 324
|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-14
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 964
K L +V+ + R Y I ++ N + + F + D TF+ Y+S+ YGI + Q
Sbjct: 26 KLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMS-DGKEITFLEYYSKNYGITVKEEDQ 84
Query: 965 PLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1024
PLL + S N + + + PEL +P + K
Sbjct: 85 PLLIHRPSERQDNHGMLLKG-------------------EILLLPELSFMTGIPEKMKKD 125
Query: 1025 LYLLPSVM--------QRLESL 1038
+ + Q +L
Sbjct: 126 FRAMKDLAQQINLSPKQHHSAL 147
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 1060 SLILEALT---------TLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSA 1110
L+ AL G + S E+LE LGD+VL+ V L+ YP+ G L+
Sbjct: 36 ELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 95
Query: 1111 RRSWAVCNSTLHKLGTDRKLQGYIR 1135
+S A L + L ++
Sbjct: 96 VKSAAASEEVLAMVSRKMNLGKFLF 120
|
| >1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 82/252 (32%)
Query: 1249 PRINEIKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCST---------- 1298
+++ + + G F + LL A+ H+S Y + + +
Sbjct: 16 SERKIVEEFQKETGINFKNEELLFRALCHSS----YANEQNQAGRKDVESNEKLEFLGDA 71
Query: 1299 -LLLSQITEYV-KSFPK-----------------------------------PGETTDSG 1321
L L + E + K +P+ GE G
Sbjct: 72 VLELF-VCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGG 130
Query: 1322 ---PSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLR--- 1375
S+ L D E+++ A+ +D +++ +F+ + +K+ +
Sbjct: 131 RDRDSI-----LADAFEALLAAIYLDQ--GYEKIKELFEQEFEFYI--EKIMKGEMLFDY 181
Query: 1376 --ELIELCDSLG-----YFVKENCTLKGEMVHA---ELRLQLKDVLLVGEGQERSRKAAK 1425
L E+ S Y + + + +++ + G+ R++K A+
Sbjct: 182 KTALQEIVQSEHKVPPEYILVRT---EKN-DGDRIFVVEVRVNGKTI-ATGKGRTKKEAE 236
Query: 1426 GKAASQLLKKLE 1437
+AA +KL
Sbjct: 237 KEAARIAYEKLL 248
|
| >3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM----E 1078
++LY + M+ +E L + + ++ +L++ ALT +SF E
Sbjct: 16 ENLYFQSNAMKNIEKLE------QSLTYEFKD----KNLLIHALTH----KSFKKSYNNE 61
Query: 1079 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
RLE LGD+VL V +LF + K EG LS R+ V + K+ L +I
Sbjct: 62 RLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
|
| >3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 32/148 (21%), Positives = 45/148 (30%), Gaps = 46/148 (31%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDS 1137
ERLE LGDS L VS ++ +P +EG LS + V N+ L T ++
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ-- 187
Query: 1138 AFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDM-GHRWMGSKT 1196
+ SK
Sbjct: 188 -------------------------------------------GNIATPTRVVKDKMSKR 204
Query: 1197 IADCAEALIGAYYVGGGLIAALYMMKWL 1224
ADC +A IGA + L + +WL
Sbjct: 205 YADCVQAYIGALVIDRFGTEFLDIKEWL 232
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 50 QLKVFEVA--KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH 107
Q + + + +N + + T +GKT+IA + + I + G K +++ P L
Sbjct: 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAM---VHRILTQGGK--AVYIVPLKALAE 82
Query: 108 QQYDVIRVHTDFEVEEYYGAKGVDEW--DSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
+++ +F+ E G + V D + + K D+++ T + LR
Sbjct: 83 EKFQ------EFQDWEKIGLR-VAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSW 135
Query: 166 LDIVCFIVIDECH 178
+ V +V DE H
Sbjct: 136 IKDVKILVADEIH 148
|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 1e-13
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 21/108 (19%)
Query: 904 AKNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPG 963
+K L +VVL + + Y + +I + + +S F D +F+ Y+ ++Y +
Sbjct: 25 SKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKA-DGSEVSFLEYYRKQYNQEITDLK 83
Query: 964 QPLLRLKQSHNPHNLLVNFNDGGGSGKGSKSGMNTKKPQMHVHMPPEL 1011
QP+L + + + PEL
Sbjct: 84 QPMLV--------------------SQPKRRRGPGGTLPGPAMLIPEL 111
|
| >3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 1023 KSLYLLPSVMQRLESLMLASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSM----E 1078
++LY + M+ +E +L + + ++ +L++ ALT +SF E
Sbjct: 16 ENLYFQSNAMKNIE------KLEQSLTYEFKD----KNLLIHALTH----KSFKKSYNNE 61
Query: 1079 RLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIR 1135
RLE LGD+VL V +LF + K EG LS R+ V + K+ L +I
Sbjct: 62 RLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 1060 SLILEALTTLGCCESFSM----ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWA 1115
SL+ +ALT S+S E LE LGD+++ + + L P K EG LS +++
Sbjct: 19 SLLEKALTH----VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYL 74
Query: 1116 VCNSTLHKLGTDRKLQGYIR 1135
+ + L +L +IR
Sbjct: 75 ISEEFFNLLAQKLELHKFIR 94
|
| >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 1327 PKALGDLLESIVGAVLIDTKLNLDE----VWRIFKPILSPIVTPDKLELPPLRELIELCD 1382
+GD+ E++ AV ID+ + + +++FK + + +++ L E+
Sbjct: 102 ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQ 161
Query: 1383 SLG-----YFVKENCTLKGEMVHA---ELRLQLKDVLLVGEGQERSRKAAKGKAASQLLK 1434
Y + +G H + ++K+ +GEG +S+K A+ +AA +L+K
Sbjct: 162 KRWKERPEYRLISV---EGP-HHKKKFIVEAKIKEYRTLGEG--KSKKEAEQRAAEELIK 215
Query: 1435 KLE 1437
LE
Sbjct: 216 LLE 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 1e-12
Identities = 100/667 (14%), Positives = 185/667 (27%), Gaps = 201/667 (30%)
Query: 116 HTDFEV-EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILL-----------DALRKAF 163
H DFE E Y K + + + DV M IL DA+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 164 LSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCE 223
+ + +++++F + + SP+ + +M
Sbjct: 66 RLFWTLL------------SKQ-EEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTR 110
Query: 224 GQISELESTL-DSQVFT-----------------IEDKTEMEVFV-------PS--AKES 256
I + + D+QVF +E + V + + A +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 257 CRFYD-QSKFCGSDLKGKLEVSWSKF------DASLSKLQGSQLNCYKDMDDKHKTLRKQ 309
C Y Q K ++ W + L LQ +D +
Sbjct: 171 CLSYKVQCKMDF-------KIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDH 219
Query: 310 LSDYHAKILYCLDELGLICAYEAVKICL--------EKVLKAQEECEIYRQSSLQCKYFL 361
S+ +I EL + + + CL K A L CK
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---------LSCK--- 267
Query: 362 EEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLH--ELLQLFLSF-GKSTQVL-- 416
+L + + D + + + L + S L E+ L L + Q L
Sbjct: 268 --IL-LTTRFKQVTDFL----SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 417 --CII--FVERIIAAKVVERFVKKVPFLTHLTVAYLTGS-TTSVDALTPKVQKEVLESFR 471
IIA + + + H+ LT +S++ L P +++ +
Sbjct: 321 EVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL- 378
Query: 472 GGKVNLLFATDVIEEGMHVPNCSYVIR-FDLPKTVSSYIQSRGRARQHNSQFILMLERGN 530
+F H+P + FD+ K+ + ++ ++E+
Sbjct: 379 -----SVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQP 421
Query: 531 LKQRNKLFDIIRSER--SVTDTALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVN 588
+ + I + + AL R IV+ N
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRS-----------------IVD----------HYN 454
Query: 589 LIHRYCE----MLPSDKYYTPKPIFKY-----KSAEEAYECEL----------------- 622
+ + D+Y + + K+ E L
Sbjct: 455 IPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 623 -TLPSNAPFQTIVGPTSRNKNLSKQLVCLEACEKLHQVGALND--HLLPSVEEPSENNLI 679
+ NA + T + K +C + K ++ +N LP +EE NLI
Sbjct: 510 DSTAWNAS--GSILNTLQQLKFYKPYIC-DNDPKYERL--VNAILDFLPKIEE----NLI 560
Query: 680 SKKNESL 686
K L
Sbjct: 561 CSKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-12
Identities = 84/564 (14%), Positives = 155/564 (27%), Gaps = 147/564 (26%)
Query: 3 SPLNSLKRSFGEVHSPNPPDMGSSGHDHAVDGPSSSTNSIN----------------FIP 46
+++ EV N + S PS T +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 47 R---IYQLK--VFEVAKRRNTIAVLE--TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIF- 98
R +L+ + E+ R +++ G+GKT +A+ + FK IF
Sbjct: 133 RLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFK---IFW 186
Query: 99 ------------LAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
L L++Q +D + + + + +N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 147 VLVM----TPQILLDALRKAFLSLDIVCFI--------VIDECHHATGNHPYTKIMKEFY 194
+LV+ + AF ++ C I V D AT H
Sbjct: 247 LLVLLNVQNAKAW-----NAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 195 HKSDNKP---KVFGMTAS--PVVRKGVS-------SAMDCEGQISELESTLD--SQVFTI 240
+ K K P + + I + +T D V
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCD 353
Query: 241 EDKTEMEVFV---PSAKESCRFYDQSKFCGSDLK---GKLEVSWSKFDAS-----LSKLQ 289
+ T +E + A+ F S F L + W S ++KL
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 290 GSQLNCYKDMD-------DKHKTLRKQLSDY---HAKILYCLDELGLICAYEAVKICLEK 339
L K + L+ +L + H I+ D + + +
Sbjct: 413 KYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIPKTF-----DSDD 463
Query: 340 VLKAQEECEIYRQSSLQCKYFLEEVLHVIG---SALPLADK------IFLDFGFDYSKAV 390
++ + +YF H IG + ++ +FLDF F K
Sbjct: 464 LIPPYLD-----------QYFYS---H-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 391 DLGYISTKLHELLQLFLSFGKSTQVLCII--FVERIIAAKVVERFVKKVPFLTHLTVAYL 448
+L +C ER++ A + F+ K+ +L
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--ILDFLPKIE--ENL---IC 561
Query: 449 TGSTTSVD-ALTPKVQKEVLESFR 471
+ T + AL + + E+ +
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-11
Identities = 90/629 (14%), Positives = 185/629 (29%), Gaps = 219/629 (34%)
Query: 297 KDMDDKH--KTLRKQLSDYHAKILYCLDE--------LGLICAY--EAVKICLEKVLKA- 343
+ D K + LS + + + + E V+ +E+VL+
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 344 --------QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYI 395
+ E RQ S+ + ++E+ + A ++ S+ +
Sbjct: 91 YKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAK-------YNVSRLQPYLKL 140
Query: 396 STKLHEL-----LQLF--LSFGKSTQVLCIIFVERIIAAKVV--ERFVKKVPFLTHLTVA 446
L EL + + L GK+ + A V + K+ F +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKT--WV---------ALDVCLSYKVQCKMDF----KIF 185
Query: 447 YLT-GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTV 505
+L + S + + +Q LL+ D + + +R +
Sbjct: 186 WLNLKNCNSPETVLEMLQ------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 506 SSYIQSRGRARQH-NSQFILMLERGNLKQRN--KLFD------IIRSERSVTDTALSRDP 556
+ + + N +L N++ F+ + + VTD
Sbjct: 234 LRRLLKS---KPYENCLLVL----LNVQNAKAWNAFNLSCKILLTTRFKQVTD------- 279
Query: 557 EACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEE 616
FL A T ++ ++T D +L+ +Y + P D
Sbjct: 280 ---FLSA---ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---------------- 317
Query: 617 AYECELTLPSNA----PFQ-TIVG-----PTSRNKNLSKQLVCLEACEKLHQVGALNDHL 666
LP P + +I+ + N K + C+KL + +
Sbjct: 318 -------LPREVLTTNPRRLSIIAESIRDGLATWDNW-KHV----NCDKLTTI------I 359
Query: 667 LPSVE--EPSENNLISKKN-ESL---PGAGTTKRKELHGTTPIRALSGRWGEKCGVILHA 720
S+ EP+E +K + L P H P LS W +
Sbjct: 360 ESSLNVLEPAEY----RKMFDRLSVFP-------PSAH--IPTILLSLIWFDV------- 399
Query: 721 YKFNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVH---LDA 777
+ +V +++ S ++ + + + +K + + +H +D
Sbjct: 400 -IKSDVMVVVNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 778 DQMSKAKCFQEL--------FFN---------------GLFGKLFVKSKSSGSREF-FLK 813
+ K +L F++ LF +F+ +F FL+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--------DFRFLE 504
Query: 814 ---RETNSLWSPSYMYLLLPLEIVNTFGD 839
R ++ W+ I+NT
Sbjct: 505 QKIRHDSTAWNA-------SGSILNTLQQ 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 6e-08
Identities = 66/537 (12%), Positives = 138/537 (25%), Gaps = 142/537 (26%)
Query: 892 KDVIHLANGSVDAKNLKDMVVLAIHTGRIYSIVEIV---NNSSAESPFDGNTDDD----- 943
KDV + + + + +++ + + + + +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 944 -------------SKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLVNFNDG----- 985
++ ++ Y + + RL+ L+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 986 ---GGSGKGSKSGMNTKKPQMHVHMPPEL----LVRVDVPISVVKSLYLL-----PSVMQ 1033
GSGK + ++ M ++ L + P +V++ L L P+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 1034 RLESLMLASQLREEINCHSRNF-----HIPSSLILEALTTLGCCESFSMERLELLGDSVL 1088
R + I R + L+L + +F+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------------ 263
Query: 1089 KYAVSCH-LFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWV-- 1145
+SC L T K+ LSA + + T +++ + +++
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLDC 313
Query: 1146 APGQLSLRPVPCE-CGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMG---------SK 1195
P L P E + + + + D W +
Sbjct: 314 RPQDL-----PREVLTTNPRRLSIIAESIR-----------DGLATWDNWKHVNCDKLTT 357
Query: 1196 TIADCAEAL----IGAYYVGGGL------I-AALYMMKWLGIDADLEVSLVDDCITRASL 1244
I L + + I L + W + + +V+ SL
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SL 416
Query: 1245 --RSYVPRINEIKDIESKIGY-EFTVKFLLQEAITHASVQEFY----CYQN--------- 1288
+ I I Y E VK L E H S+ + Y + +
Sbjct: 417 VEKQPKESTISIPSI-----YLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 1289 --LYKHL-QHCSTLLLSQITEYVKSFPK--------PGETTDSGPSMKAPKALGDLL 1334
Y H+ H L + E + F + + A ++ + L
Sbjct: 471 QYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-06
Identities = 87/576 (15%), Positives = 168/576 (29%), Gaps = 187/576 (32%)
Query: 723 FNFACSIVTEIYSGFVLLIESELDNDVGNFELELYLVSKTVKATVSSSGQVHLDADQMSK 782
F S E+ FV E L + +L+S S + +Q +
Sbjct: 68 FWTLLSKQEEMVQKFV---EEVLRINYK------FLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 783 AKCFQELFFNG--LFGKLFVKSKSSGSREFFLKRETNSLWSPSYMYLLLPLEIVNTFGDG 840
+N +F K V SR + +L L P + V G
Sbjct: 119 -------LYNDNQVFAKYNV------SRLQPYLKLRQALLE------LRPAKNVLIDGVL 159
Query: 841 ----SW-----------------RINWSGINPCASVVEFIKE-KSFLGAAQCNNNGGNSS 878
+W +I W + C S ++ + L N +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 879 PC----RTSPCKTGC--------HGKDVIHLANGSV-DAKNLKDM-----VVLAIHTGRI 920
R + + ++ L N V +AK ++L T R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILL---TTRF 274
Query: 921 YSIVEIVNNS-----SAESPFDGNTDDDSKT-FVNYFSEKYG-----IVLIHPGQPLLRL 969
+ + ++ + S + T D+ K+ + Y + ++ +P RL
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRL 330
Query: 970 ----KQSHNPHNLLVNFNDGGGSGKGS--KSGMNTKKP-------------QMHVHMPPE 1010
+ + N+ + +S +N +P H+P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1011 LLVRV------DVPISVV-----KSL---------YLLPSVMQRLESLMLASQLREEINC 1050
LL + + VV SL +PS+ L+ +L E
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-----KLENEYAL 445
Query: 1051 HSR---NFHIPSSLILEALTT----------LGCCESFSMERLELLGDSVLKYAVSCHLF 1097
H +++IP + + L +G ++ +E + + +F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPE----RMTLFRMVF 497
Query: 1098 LTY----PK-KHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
L + K +H+ +W S L+ L + + YI D+ DP+
Sbjct: 498 LDFRFLEQKIRHDST-----AWNASGSILNTLQQLKFYKPYICDN--DPKY--------- 541
Query: 1153 RPVPCECGVDTLEVPLDGKFFTQ-DTKVVVGKPCDM 1187
E V+ + F + + ++ K D+
Sbjct: 542 -----ERLVNAIL-----DFLPKIEENLICSKYTDL 567
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 1078 ERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLG---TDRKLQGYI 1134
ERLE LGD+VL ++ LF +P + EG L+ R+ V L + L ++
Sbjct: 43 ERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHV 102
Query: 1135 R 1135
Sbjct: 103 L 103
|
| >2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 23/132 (17%)
Query: 1330 LGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVTPDKLELPPLR-----ELIELCDSL 1384
L D +ES++GA+ + +++ + + P++ D L EL +
Sbjct: 120 LADGMESLLGAIYLQH--GMEKAREVILRLFGPLL--DAAPTLGAGLDWKTSLQELTAAR 175
Query: 1385 G-----YFVKENCTLKGEMVHA---ELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436
G Y V G H + + D G G RS+K A+ KAA+ K L
Sbjct: 176 GLGAPSYLVTS----TGP-DHDKEFTAVVVVMDSEY-GSGVGRSKKEAEQKAAAAAWKAL 229
Query: 1437 EVCEKRISKGAS 1448
EV + + S
Sbjct: 230 EVLDNAMPGKTS 241
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 50 QLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQ 108
Q + E +N + + T AGKT++A M + + G K +++ P L +
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM---VREA-IKGGK--SLYVVPLRALAGE 83
Query: 109 QYDVIRVHTDFEVEEYYGAKGVDE--WDSQCWQKEINKNDVLVMTPQILLDALRKAFLSL 166
+Y+ F+ E G + + D + + + D++V T + +R +
Sbjct: 84 KYE------SFKKWEKIGLR-IGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWI 136
Query: 167 DIVCFIVIDECH 178
V +V+DE H
Sbjct: 137 KAVSCLVVDEIH 148
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
K LL L + GK + ++FVE A +E F+ + + TS+
Sbjct: 32 KRSFLLDLLNATGKDSLT--LVFVETKKGADSLEDFLYHEGY-----------ACTSIHG 78
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
D + Q++ L FR GK +L AT V G+ + N +VI FDLP + Y+
Sbjct: 79 D----RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134
Query: 513 GR 514
GR
Sbjct: 135 GR 136
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
L E LQ T +IF E+ + ++ ++
Sbjct: 45 YLLECLQ-------KTPPPVLIFAEKKADVDAIHEYLLLKGV-----------EAVAIHG 86
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
K Q+E +E+FR GK ++L ATDV +G+ P +VI +D+P+ + +Y+
Sbjct: 87 G----KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 142
Query: 513 GR 514
GR
Sbjct: 143 GR 144
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 3e-11
Identities = 79/502 (15%), Positives = 167/502 (33%), Gaps = 64/502 (12%)
Query: 33 DGPSSSTNSINFIPRIYQLK-VFEVAKRRNTIAVL--ETGAGKTMIAVMLIKDIAQAIKS 89
P S +QL +V +R +L E G GKT+ A M++ Q + S
Sbjct: 141 RMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILH---QQLLS 197
Query: 90 NGFKKLIIFLAPTVHLVHQ-QYDVIRV-HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
++++I + P L HQ +++R + F + + + E +
Sbjct: 198 GAAERVLI-IVPE-TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTE----QL 251
Query: 148 LVMT-PQILLDALRKAFLSL---DIVCFIVIDECHHATGN-HPYTKIMKEFYHKSDNKPK 202
++ + R L D++ V+DE HH + ++ + +++ P
Sbjct: 252 VICSLDFARRSKQRLEHLCEAEWDLL---VVDEAHHLVWSEDAPSREYQAIEQLAEHVPG 308
Query: 203 VFGMTASPVVRKGVSSAMDCEGQISE---LESTLDSQVFT--IEDKTEMEVFVPSAKESC 257
V +TA+P + + LD F + E + + P A
Sbjct: 309 VLLLTATPE-----------QLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVA 357
Query: 258 RFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYH--A 315
+K +D L + D + +D + L L D H +
Sbjct: 358 MLLAGNKL-SNDELNMLGEMIGEQDIEPLLQAANSD--SEDAQSARQELVSMLMDRHGTS 414
Query: 316 KILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375
++L+ G+ + ++ L Q + I + + E+ + +
Sbjct: 415 RVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIY 474
Query: 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVK 435
+ D ++ L+ L+ +S +VL + + A +E+ ++
Sbjct: 475 QEFEGD-------NATWWNFDPRVEWLMGY-LTSHRSQKVL--VICAKAATALQLEQVLR 524
Query: 436 KVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFR--GGKVNLLFATDVIEEGMHVPNC 493
+ + A + ++ + F +L +++ EG +
Sbjct: 525 E---REGIRAAVFHEGMSIIE------RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFA 575
Query: 494 SYVIRFDLPKTVSSYIQSRGRA 515
S+++ FDLP Q GR
Sbjct: 576 SHMVMFDLPFNPDLLEQRIGRL 597
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 3e-10
Identities = 58/289 (20%), Positives = 100/289 (34%), Gaps = 52/289 (17%)
Query: 46 PRIYQ-------LKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA---IKSNGFKKL 95
PR YQ ++ K+R+ I + TG GKT++A + + A + K
Sbjct: 179 PRYYQQIAINRAVQSVLQGKKRSLI-TMATGTGKTVVAFQISWKLWSARWNRTGDYRKPR 237
Query: 96 IIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL 155
I+FLA LV D + G K V + + Q +
Sbjct: 238 ILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKVVKSRE------------IYFAIYQSI 285
Query: 156 LDALRKAFLSLDIVC----FIVIDECHHATGNHP--YTKIMKEFYHKSDNKPKV-FGMTA 208
R+ L + I+IDECH + + +I++ F +P GMTA
Sbjct: 286 ASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYF------EPAFQIGMTA 339
Query: 209 SPVVRKGVSSAMDCEGQISE--LESTLDS------QVFTIEDKTEMEVFVPSAKESCRF- 259
+P+ + I L +D +V + + + + PS + RF
Sbjct: 340 TPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG 399
Query: 260 --YDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNCYKDMDDKHKTL 306
++ D + + ++ DA L + K D KT+
Sbjct: 400 REIPDGEYQTKDFERVI-ALKARTDAFAKHLT----DFMKRTDRFAKTI 443
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
K LL L + GK + L +FVE A +E F+ + + TS+
Sbjct: 262 KRSFLLDLLNATGKDSLTL--VFVETKKGADSLEDFLYHEGY-----------ACTSIHG 308
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
D + Q++ L FR GK +L AT V G+ + N +VI FDLP + Y+
Sbjct: 309 D----RSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 364
Query: 513 GR 514
GR
Sbjct: 365 GR 366
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 56 VAKRRNTIAVLETGAGKT------MIAVMLIKDIAQAIKSNGFKK---------LIIFLA 100
+ ++R+ +A +TG+GKT +++ + +A+++ + + LA
Sbjct: 49 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108
Query: 101 PTVHLVHQQYDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILL 156
PT L Q Y+ R + YG G D Q +++ + +LV TP L+
Sbjct: 109 PTRELAVQIYEEARKFSYRSRVRPCVVYG--GADIGQ-QI--RDLERGCHLLVATPGRLV 163
Query: 157 DALRKAFLSLDIVCFIVIDE 176
D + + + LD ++V+DE
Sbjct: 164 DMMERGKIGLDFCKYLVLDE 183
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-09
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 29/126 (23%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL------TVAYLT 449
K +L L L F +IFV + V++ L L +
Sbjct: 18 KNRKLFDLLDVLEFN-----QVVIFV----------KSVQRCIALAQLLVEQNFPAIAIH 62
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
+ + + + F+ + +L AT++ GM + + +D+P+ +Y+
Sbjct: 63 RG------MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 116
Query: 510 QSRGRA 515
RA
Sbjct: 117 HRVARA 122
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-09
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHL------TVAYLT 449
K L L+ +S +IF +KV LT TV+ +
Sbjct: 17 KYECLTDLYDSISVT-----QAVIFC----------NTRRKVEELTTKLRNDKFTVSAIY 61
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYI 509
L + + +++ FR G +L +TD++ G+ V S VI +DLP +YI
Sbjct: 62 SD------LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 115
Query: 510 QSRGRA 515
GR
Sbjct: 116 HRIGRG 121
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV-- 455
K +L+++ T I+FVE A + F+ + F TTS+
Sbjct: 288 KRSKLIEILSEQADGT----IVFVETKRGADFLASFLSEKEF-----------PTTSIHG 332
Query: 456 DALTPKVQKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR 512
D ++Q + L F+ G + +L AT V G+ + N +VI +D+P + Y+
Sbjct: 333 D----RLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRI 388
Query: 513 GR 514
GR
Sbjct: 389 GR 390
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 56 VAKRRNTIAVLETGAGKTM--IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113
++ R+ +A +TG+GKT + +L K + + + ++ ++PT L Q ++
Sbjct: 90 ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEA 149
Query: 114 R---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIV 169
R + ++ YG G Q + I + V++ TP LLD + + F++ +
Sbjct: 150 RKFAFESYLKIGIVYG--GTSFRH-QN--ECITRGCHVVIATPGRLLDFVDRTFITFEDT 204
Query: 170 CFIVIDE 176
F+V+DE
Sbjct: 205 RFVVLDE 211
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
Query: 401 ELLQLFLSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALT 459
LL L ++T+ I+FV R ++ + + YL G
Sbjct: 19 ALLVHLLKQPEATRS--IVFVRKRERVHELANWLREA-----GINNCYLEGE-------- 63
Query: 460 PKVQK---EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSR---- 512
VQ E ++ G+VN+L ATDV G+ +P+ S+V FD+P++ +Y+ R
Sbjct: 64 -MVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH-RIGRT 121
Query: 513 GRA 515
RA
Sbjct: 122 ARA 124
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Length = 282 | Back alignment and structure |
|---|
Score = 54.7 bits (130), Expect = 8e-08
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 18/173 (10%)
Query: 39 TNSINFIPRIY-QLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLII 97
+ + P Y + VFE R I L T AG+++I +L + + + I+
Sbjct: 107 SGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGK-----IL 161
Query: 98 FLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLD 157
+ PT L Q D + F G ++ N V+V T Q ++
Sbjct: 162 IIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDDKYK---NDAPVVVGTWQTVVK 217
Query: 158 ALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
++ F ++ DECH ATG + I+ +N FG++ S
Sbjct: 218 QPKEWFSQFGMMM---NDECHLATGKS-ISSIIS----GLNNCMFKFGLSGSL 262
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 9e-08
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTM-IAVMLIKDIAQAIKSNGFKKLIIFLAPTV 103
RI + ++ V TG GKT + + G K + + PTV
Sbjct: 30 AKRI--------VQGKSFTMVAPTGVGKTTFGMMTALWLA-----RKGKKSAL--VFPTV 74
Query: 104 HLVHQQYDVIR--VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRK 161
LV Q + ++ ++ +Y + +E + E + +LV + Q + K
Sbjct: 75 TLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 134
Query: 162 AFLSLDIVCFIVIDE 176
LS F+ +D+
Sbjct: 135 --LSQKRFDFVFVDD 147
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 30/174 (17%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
KL ELL++F +IF + K + ++K+ F +V
Sbjct: 243 KLVELLEIF---RDGI----LIFAQTEEEGKELYEYLKRFKF--------------NVGE 281
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEE----GMHVPNC-SYVIRFDLPKT--VSSYIQ 510
+ ++ E F+ GK+N+L G+ +P YVI + P V +YIQ
Sbjct: 282 TWSE-FEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQ 340
Query: 511 SRGRA-RQHNSQFILMLERGNLKQRNKLFDIIRSERSVTDTALSRDPEACFLKA 563
+ GR+ R N + + + + + + + + EA + +
Sbjct: 341 ASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKEL 394
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 56 VAKRRNTIAVLETGAGKT------MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQ 109
+ + R+ +A +TG+GKT +I ++ +D+ Q S + LAPT L Q
Sbjct: 57 ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116
Query: 110 YDVIR---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLS 165
+ ++T YG G D Q +E+ +LV TP L+D + K +S
Sbjct: 117 LSESQKFSLNTPLRSCVVYG--GADTHS-QI--REVQMGCHLLVATPGRLVDFIEKNKIS 171
Query: 166 LDIVCFIVIDE 176
L+ +IV+DE
Sbjct: 172 LEFCKYIVLDE 182
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
K L ++ G T IIF + + + ++ H V+ L+G
Sbjct: 21 KYQALCNIY---GSITIGQAIIFCQTR---RNAKWLTVEMIQDGH-QVSLLSG------E 67
Query: 458 LTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS------SYIQS 511
LT + + +++ FR GK +L T+V G+ V + V+ FDLP +Y+
Sbjct: 68 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHR 127
Query: 512 RGR 514
GR
Sbjct: 128 IGR 130
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
+++ F+ + +L TDV GM PN V++ +P +++YI GR AR
Sbjct: 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 384
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
VL +FR G+V +L ATDV G+ +P V+ + LP +Y GR
Sbjct: 73 VLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGR 121
|
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-07
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 905 KNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPF---DGNTDDDSKTFVNYFSEKYGIV 958
K +K + V H G R Y + + ++ F + T YF +++ +V
Sbjct: 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLV 321
Query: 959 LIHPGQPLLRLKQSHNP 975
L +P P L++ Q
Sbjct: 322 LRYPHLPCLQVGQEQKH 338
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-07
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 465 EVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR-AR 516
+++ F+ + +L TDV GM PN V++ +P +++YI GR AR
Sbjct: 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR 435
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
V+ +FR G+V +L ATDV G+ +P V+ + +P +Y GR
Sbjct: 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
V+ F+ K+ +L ATDV+ G+ V + + VI + LP+ SY+ GR
Sbjct: 280 VIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 37/211 (17%), Positives = 60/211 (28%), Gaps = 41/211 (19%)
Query: 58 KRRNTIAVLETGAGK-TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116
KR T+ L GAGK + L++ +A+K + LAPT RV
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLVR---EAVKKRL---RTVILAPT-----------RVV 43
Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVI 174
E+ E + + + V M K + ++
Sbjct: 44 AS-EMYEALRGEPIRYMTPAVQSERTGNEIVDFMCHSTF---TMKLLQGVRVPNYNLYIM 99
Query: 175 DECHHATGNH-PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQ---ISELE 230
DE H ++ S MTA+P I + E
Sbjct: 100 DEAHFLDPASVAARGYIETR--VSMGDAGAIFMTATPPGT-----TEAFPPSNSPIIDEE 152
Query: 231 STLDSQVFTI------EDKTEMEVFVPSAKE 255
+ + + + E FV S K+
Sbjct: 153 TRIPDKAWNSGYEWITEFDGRTVWFVHSIKQ 183
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 463 QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
Q++ V+ F+ G+ L ATDV G+ + N S VI +DLP SY+ GR
Sbjct: 71 QEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGR 125
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDA 457
KLH L LF K IIF +V L +T S
Sbjct: 245 KLHCLNTLF---SKLQINQAIIFC----------NSTNRVELLAKK----ITDLGYSCYY 287
Query: 458 LTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
++ Q+E V FR GKV L +D++ G+ + + VI FD PKT +Y+ G
Sbjct: 288 SHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIG 347
Query: 514 RA 515
R+
Sbjct: 348 RS 349
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-06
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTH------LTVAYLTGS 451
K L L+ + +IF +KV LT TV+ +
Sbjct: 246 KYECLTDLY---DSISVTQAVIFC----------NTRRKVEELTTKLRNDKFTVSAIYSD 292
Query: 452 TTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
L + + +++ FR G +L +TD++ G+ V S VI +DLP +YI
Sbjct: 293 ------LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346
Query: 512 RGR 514
GR
Sbjct: 347 IGR 349
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
K +L L L F QV +IFV + V++ L L L
Sbjct: 237 KNRKLFDLLDVLEF---NQV--VIFV----------KSVQRCIALAQL----LVEQNFPA 277
Query: 456 DALTPKV-QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQS 511
A+ + Q+E + F+ + +L AT++ GM + + +D+P+ +Y+
Sbjct: 278 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 337
Query: 512 RGRA 515
RA
Sbjct: 338 VARA 341
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 463 QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
QKE +++ FR G +L +TDV G+ VP S +I +DLP YI GR
Sbjct: 312 QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGR 366
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-06
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 463 QKE---VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
QKE ++ FR G +L TD++ G+ V S VI +DLP +YI GR
Sbjct: 316 QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 370
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 466 VLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGR 514
+++FR G+ ++L TDV G+ +P VI FD P+ + +YI GR
Sbjct: 258 NIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGR 306
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 56 VAKRRNTIAVLETGAGKTMIAVML--IKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113
+ R +A TG+GKT+ A + + + Q + GF+ LI ++PT L Q + +
Sbjct: 63 MLHGRELLASAPTGSGKTL-AFSIPILMQLKQP-ANKGFRALI--ISPTRELASQIHREL 118
Query: 114 R---VHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL--RKAFLSLDI 168
T F + + + K D+LV TP L+ L + L
Sbjct: 119 IKISEGTGFRIHMIHK--AAVAAKKFGPKSS-KKFDILVTTPNRLIYLLKQDPPGIDLAS 175
Query: 169 VCFIVIDE 176
V ++V+DE
Sbjct: 176 VEWLVVDE 183
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
Score = 48.5 bits (114), Expect = 2e-05
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 905 KNLKDMVVLAIHTGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQ 964
++ K +V + + ++ S N + ++YF KY I L +P
Sbjct: 382 RSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYDITLKYPDM 441
Query: 965 PLLRLKQSHNP 975
L+ L ++
Sbjct: 442 KLVNLGGKNDV 452
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 60 RNTIAVLETGAGKTM--IAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIR--- 114
+ + V +TG+GKT+ + ++ Q G + + LAPT L Q V
Sbjct: 67 LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126
Query: 115 VHTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIV 173
+ YG G + Q +++ + ++ + TP L+D L +L ++V
Sbjct: 127 RACRLKSTCIYG--GAPKGP-QI--RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181
Query: 174 IDE 176
+DE
Sbjct: 182 LDE 184
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS 454
K L L+ ++ +IF R A+ + K+ VA L+G
Sbjct: 253 KFQALCNLYGAITIA-----QAMIFCHTRKTASWLAAELSKE-----GHQVALLSG---- 298
Query: 455 VDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+ + + V+E FR GK +L T+V G+ V S VI FDLP
Sbjct: 299 --EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-05
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 416 LCIIFVE-RIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474
IIFV + A + + + V+ L G L + + +++ FR G+
Sbjct: 245 SSIIFVATKKTANVLYGKLKSE-----GHEVSILHG------DLQTQERDRLIDDFREGR 293
Query: 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVS------SYIQSRGR 514
+L T+V+ G+ +P S V+ +DLP + +YI GR
Sbjct: 294 SKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGR 339
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 398 KLHELLQLF--LSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455
K L L+ ++ +IF K ++ H VA L+G
Sbjct: 320 KFQALCNLYGAITIA-----QAMIFCHTR---KTASWLAAELSKEGH-QVALLSG----- 365
Query: 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLP 502
+ + + V+E FR GK +L T+V G+ V S VI FDLP
Sbjct: 366 -EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 35/209 (16%)
Query: 57 AKRRNTIAVLETGAGK-TMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL---VHQQYDV 112
K T+ GAGK ++ + A+ + + LAPT + + + +
Sbjct: 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR------RLRTLVLAPTRVVLSEMKEAFHG 59
Query: 113 IRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFI 172
+ V + + S + + M L + + + I
Sbjct: 60 LDVK--------FHTQAFSAHGSG-------REVIDAMCHATLTYRMLEP-TRVVNWEVI 103
Query: 173 VIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELEST 232
++DE H + N+ MTA+P G+I ++++
Sbjct: 104 IMDEAHFLDP-ASIAARGWAAHRARANESATILMTATPPGT--SDEFPHSNGEIEDVQTD 160
Query: 233 LDSQVFTI--EDKTEME----VFVPSAKE 255
+ S+ + + + F+PS +
Sbjct: 161 IPSEPWNTGHDWILADKRPTAWFLPSIRA 189
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 60 RNTIAVLETGAGKTM--IAVMLIKDIAQAI---KSNGFKKLIIFLAPTVHLVHQQYDVIR 114
+ I V +TG GKT+ + I +Q I + NG L+ L PT L
Sbjct: 58 IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV--LTPTRELALHVEAECS 115
Query: 115 V--HTDFEVEEYYGAKGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCF 171
+ + YG G + Q ++I+K D+++ TP L D ++L + +
Sbjct: 116 KYSYKGLKSICIYG--GRNRNG-QI--EDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170
Query: 172 IVIDE 176
+VIDE
Sbjct: 171 LVIDE 175
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV---H 116
+ +A ++G GKT I Q I ++ + LAPT L Q V+ H
Sbjct: 52 HDVLAQAQSGTGKT--GTFSIA-ALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH 108
Query: 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDE 176
D +V G E + + ++V TP + D +++ D + ++DE
Sbjct: 109 MDIKVHACIGGTSFVE---D--AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV-- 115
K + IA ++G GKT A I I Q ++ + + LAPT L Q VI
Sbjct: 66 KGYDVIAQAQSGTGKT--ATFAIS-ILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122
Query: 116 -HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVI 174
+ G V + + + ++V TP + D L + +LS + V+
Sbjct: 123 DYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179
Query: 175 DE 176
DE
Sbjct: 180 DE 181
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 5e-04
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 68 TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127
T AGKT++A I AQ++K+ + +I+ +P L +Q+Y + +G
Sbjct: 110 TSAGKTVVAEYAI---AQSLKNK---QRVIYTSPIKALSNQKYR------ELL--AEFGD 155
Query: 128 KGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
G+ D IN + LVMT +IL L + + V +++ DE H
Sbjct: 156 VGLMTGDIT-----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 202
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 68 TGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGA 127
T AGKT++A I AQ++K+ + +I+ +P L +Q+Y + +G
Sbjct: 208 TSAGKTVVAEYAI---AQSLKNK---QRVIYTSPIKALSNQKYR------ELL--AEFGD 253
Query: 128 KGVDEWDSQCWQKEINKN-DVLVMTPQILLDALRKAFLSLDIVCFIVIDECH 178
G+ D IN + LVMT +IL L + + V +++ DE H
Sbjct: 254 VGLMTGDIT-----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 300
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 31/216 (14%)
Query: 48 IYQLKVFEVAKRRNTIAVLETGAGKT--MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
Y++ K+R TI L GAGKT ++ ++ + + + ++ + LAPT
Sbjct: 8 DYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLR-------TLILAPT--- 57
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
RV E+EE + + V +M L +
Sbjct: 58 --------RVVAA-EMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TR 107
Query: 166 LDIVCFIVIDECHHATGNH-PYTKIMKEFYHKSDNKPKVFGMTASPVVRKGVSS-----A 219
+ IV+DE H + + MTA+P
Sbjct: 108 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIF--MTATPPGSTDPFPQSNSPI 165
Query: 220 MDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKE 255
D E +I E S + + + + FVPS K
Sbjct: 166 EDIEREIPE-RSWNTGFDWITDYQGKTVWFVPSIKA 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1604 | ||||
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 8e-18 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 5e-17 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 7e-11 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 7e-10 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 6e-09 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 7e-09 | |
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 1e-08 | |
| d2nuga1 | 148 | a.149.1.1 (A:3-150) RNase III endonuclease catalyt | 2e-04 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-08 | |
| d1u61a_ | 127 | a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill | 1e-08 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 9e-08 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 1e-07 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 1e-07 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 2e-07 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 6e-07 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 6e-07 | |
| d1o0wa1 | 169 | a.149.1.1 (A:-1-167) RNase III endonuclease cataly | 4e-05 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 8e-06 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-05 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-05 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 7e-05 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 0.004 |
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.4 bits (199), Expect = 8e-18
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 46 PRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHL 105
PRIYQ ++ K N + VL TG GKT+IA+M+ + + ++ LAPT L
Sbjct: 10 PRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRL-----TKYGGKVLMLAPTKPL 64
Query: 106 VHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLS 165
V Q + R + E+ G + + K V TPQ + + L +S
Sbjct: 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVI--VATPQTIENDLLAGRIS 122
Query: 166 LDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
L+ V IV DE H A GN+ Y I +E+ ++ N P V G+TASP
Sbjct: 123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN-PLVIGLTASP 166
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.1 bits (199), Expect = 5e-17
Identities = 50/256 (19%), Positives = 105/256 (41%), Gaps = 25/256 (9%)
Query: 279 SKFDASLSKLQGSQLNCYKDMDDKHKTLRKQLSDYHAKI-LYCLDELGLICAYEAVKICL 337
S D ++ + ++M + LR L + + L+ EL A++ +
Sbjct: 42 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 101
Query: 338 EKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYIST 397
+K+ + + + +++ + ++ A + G D+ K
Sbjct: 102 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAK--------EIGLDHPKM-------D 146
Query: 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVD- 456
KL E+++ L +++++ I+F AK + + K + G + +
Sbjct: 147 KLKEIIREQLQRKQNSKI--IVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKEND 200
Query: 457 -ALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
L+ + QK +L+ F G+ N+L AT V EEG+ VP V+ ++ + IQ RGR
Sbjct: 201 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 260
Query: 516 -RQHNSQFILMLERGN 530
R + I+++ +G
Sbjct: 261 GRHMPGRVIILMAKGT 276
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 62.6 bits (151), Expect = 7e-11
Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 18/184 (9%)
Query: 28 HDHAVDGPSSSTNSINFIPRIYQLK-VFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQA 86
D + + + P YQ VFE R I L T AG+++I +L + +
Sbjct: 96 FDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN 155
Query: 87 IKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKND 146
+ I+ + PT L Q D + F G D + N
Sbjct: 156 YEGK-----ILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYK----NDAP 206
Query: 147 VLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGM 206
V+V T Q ++ ++ F ++ DECH ATG + I+ N FG+
Sbjct: 207 VVVGTWQTVVKQPKEWF---SQFGMMMNDECHLATGKS-ISSIISGLN----NCMFKFGL 258
Query: 207 TASP 210
+ S
Sbjct: 259 SGSL 262
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 59.9 bits (145), Expect = 7e-10
Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 393 GYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGST 452
G I + + G+ +IF K + K+ L VAY G
Sbjct: 20 GEIPFYGKAIPLEVIKGGR-----HLIFCHSK---KKCDELAAKLVALGINAVAYYRGLD 71
Query: 453 TSVDALT---PKVQKEVLESFRGGKVNLLFATDVIEEGMH---VPNCSYVIRFDLPKTVS 506
SV + V + L + G + + + + + LP+
Sbjct: 72 VSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAV 131
Query: 507 SYIQSRGRA 515
S Q RGR
Sbjct: 132 SRTQRRGRT 140
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (128), Expect = 6e-09
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 905 KNLKDMVVLAIHTG---RIYSIVEIVNNSSAESPFDGNTDDDS---KTFVNYFSEKYGIV 958
K +K + V H G R Y + + ++ F + T YF +KY +
Sbjct: 35 KEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQ 94
Query: 959 LIHPGQPLLRLKQSHNP 975
L +P P L++ Q
Sbjct: 95 LKYPHLPCLQVGQEQKH 111
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 55.3 bits (132), Expect = 7e-09
Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 29 DHAVDGPSSSTNSINFIPRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAI 87
D+A D + R YQ K E + VL TG+GKT +A+ I +
Sbjct: 54 DNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE----- 108
Query: 88 KSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDV 147
+ + PT+ L Q + + + + V E+ G + ++ D
Sbjct: 109 ----LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG------RIKELKPLTVSTYDS 158
Query: 148 LVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207
+ + L + ++ DE HH Y +I + P G+T
Sbjct: 159 AYVNAEKLGNRFM----------LLIFDEVHHLPAES-YVQIAQMS-----IAPFRLGLT 202
Query: 208 ASP 210
A+
Sbjct: 203 ATF 205
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 53.7 bits (128), Expect = 1e-08
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 25/136 (18%)
Query: 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQNLYKHLQHCSTLLLSQITEYVKSFPK 1313
++ +E K+GY F K LL++A+TH S + Y+ L + + +
Sbjct: 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKR 61
Query: 1314 PGETTDSGPSMKAPKAL-------------------------GDLLESIVGAVLIDTKLN 1348
G + + + + GD+ E++ AV ID+ +
Sbjct: 62 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRD 121
Query: 1349 LDEVWRIFKPILSPIV 1364
+ +F + +
Sbjct: 122 ANFTRELFYKLFKEDI 137
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 1060 SLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNS 1119
SL+ +ALT + + E LE LGD+++ + + L P K EG LS +++ +
Sbjct: 17 SLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEE 76
Query: 1120 TLHKLGTDRKLQGYI 1134
+ L +L +I
Sbjct: 77 FFNLLAQKLELHKFI 91
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 56.1 bits (134), Expect = 1e-08
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117
K+R TI L GAGKT + I + +AIK + LAPT + + + +R
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAI--VREAIKRGLR---TLILAPTRVVAAEMEEALRGL- 61
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
+ + + V +M L + + I++DE
Sbjct: 62 -----------PIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSP-IRVPNYNLIIMDEA 109
Query: 178 HH 179
H
Sbjct: 110 HF 111
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/152 (11%), Positives = 37/152 (24%), Gaps = 34/152 (22%)
Query: 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQG 1132
+ + L +GD+V + + HL + QL + V K+
Sbjct: 4 KQLNSLALAYMGDAVYEQYIRYHLLQKGKVR-PNQLHRLGTSFVSAKAQAKVVYHLLETA 62
Query: 1133 YIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWM 1192
++ + R G+ T
Sbjct: 63 FLTEEEEAVLRR-------------------------GRNANSGTVPKNTDVQT------ 91
Query: 1193 GSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1224
+ EALIG +++ ++
Sbjct: 92 --YRHSTAFEALIGYHHLLNNRERLDEIVYKA 121
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 51.7 bits (123), Expect = 9e-08
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 459 TPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-----TVSSYIQSRG 513
+ E++ R GK ++L +++ EG+ +P S V D K + S IQ+ G
Sbjct: 66 KTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 125
Query: 514 RARQHNSQFILMLERGNLKQRNKLFDIIRSER 545
RA ++ + ++M K + R
Sbjct: 126 RAARNANGHVIMYADTITKSMEIAIQETKRRR 157
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 50.2 bits (119), Expect = 1e-07
Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 23/149 (15%)
Query: 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEV 121
TG+GK+ + A + G+K ++ L P+V +
Sbjct: 11 AHLHAPTGSGKSTK-------VPAAYAAQGYK--VLVLNPSVAATLGFGAYMS------- 54
Query: 122 EEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181
+ + + + I+ DECH
Sbjct: 55 KAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGA-------YDIIICDECHSTD 107
Query: 182 GNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
++ V TA+P
Sbjct: 108 ATSILGIGTVLDQAETAGARLVVLATATP 136
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.5 bits (125), Expect = 1e-07
Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 40/226 (17%)
Query: 390 VDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLT 449
D+ + L + G II+ A+ + +K
Sbjct: 5 EDVAVNDESISTLSSILEKLGTGG----IIYARTGEEAEEIYESLKN----------KFR 50
Query: 450 GSTTSVDALTPKVQKEVLESFRGGKVNLLFAT----DVIEEGMHVP-NCSYVIRFDLPKT 504
+ +K E F G+++ L T + G+ +P + + P
Sbjct: 51 I------GIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSF 104
Query: 505 VSSYIQSRGRARQHNSQFILMLERGNLKQ--------------RNKLFDIIRSERSVTDT 550
+ I+ + + L R + R L ++ ER
Sbjct: 105 RVT-IEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 163
Query: 551 ALSRDPEACFLKACTYVKTKSYIVESTGASVTTDSSVNLIHRYCEM 596
+ R+ E F TY++ +T +S L +
Sbjct: 164 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELL 209
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 46 PRIYQLKVFEVA-KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
Q + E +N + + T AGKT++A M ++ +++ P
Sbjct: 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEM------AMVREAIKGGKSLYVVPLRA 79
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
L ++Y+ + + E+ G+ D + + + D++V T + +R
Sbjct: 80 LAGEKYESFK-----KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRAS 134
Query: 165 SLDIVCFIVIDECHH--ATGNHPYTKIMKEFYHKSDNKPKVFGMTA 208
+ V +V+DE H + +I+ + + +V G++A
Sbjct: 135 WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA 180
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 19/153 (12%)
Query: 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117
K T+ GAGKT + I ++L + +V +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECA------RRRLRTLVLAPTRVVLSEM------- 52
Query: 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDEC 177
+E + V + + M L + + ++ I++DE
Sbjct: 53 ----KEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEV-IIMDEA 107
Query: 178 HHATGNHPYTKIMKEFYHKSDNKPKVFGMTASP 210
H + ++ N+ MTA+P
Sbjct: 108 HFLDPASIAARGWAAHRARA-NESATILMTATP 139
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 49.6 bits (117), Expect = 6e-07
Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 16/175 (9%)
Query: 46 PRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
R Q ++ + V R+ + V+ TG GK++ + L + ++P +
Sbjct: 26 FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------LNGLTVVVSPLIS 76
Query: 105 LVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFL 164
L+ Q D ++ + ++ + +L + P+ L+ L
Sbjct: 77 LMKDQVDQLQ-ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHL 135
Query: 165 SLDIVCFIVIDECHH----ATGNHPYTKIMKEFYHKSDNKPKV-FGMTASPVVRK 214
+ + +DE H P + + + P + TA R+
Sbjct: 136 AHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQ 190
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 49.1 bits (116), Expect = 6e-07
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 42/162 (25%)
Query: 1250 RINEIKDIESKIGYEFTVKFLLQEAITHAS-------------------------VQEFY 1284
+++ + + G F + LL A+ H+S V E +
Sbjct: 7 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELF 66
Query: 1285 CYQNLYKHLQHCSTLLLSQITEYVKS---------------FPKPGETTDSGPSMKAPKA 1329
+ LYK L+++ S F G+ +
Sbjct: 67 VCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSI 126
Query: 1330 LGDLLESIVGAVLIDTKLNL--DEVWRIFKPILSPIVTPDKL 1369
L D E+++ A+ +D + + F+ + I+ + L
Sbjct: 127 LADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEML 168
|
| >d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 43.7 bits (102), Expect = 4e-05
Identities = 35/185 (18%), Positives = 57/185 (30%), Gaps = 58/185 (31%)
Query: 1042 SQLREEINCHSRNFHIPSSLILEALT---------TLGCCESFSMERLELLGDSVLKYAV 1092
+ ++E + +N L+ AL G + S E+LE LGD+VL+ V
Sbjct: 12 EEFQKETGINFKN----EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFV 67
Query: 1093 SCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152
L+ YP+ G L+ +S A L + L ++
Sbjct: 68 CEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLF----------------- 110
Query: 1153 RPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGG 1212
+GK + +AD EAL+ A Y+
Sbjct: 111 ----------------------------LGKGEEKTGGRDRDSILADAFEALLAAIYLDQ 142
Query: 1213 GLIAA 1217
G
Sbjct: 143 GYEKI 147
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.4 bits (109), Expect = 8e-06
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 13/174 (7%)
Query: 344 QEECEIYRQSSLQCKYFLEEVLHVIGSALPLADKIFLDFGFDYSKAVDLGYISTKLHELL 403
++E Y + K FL + A + F E
Sbjct: 17 EDERVEYEKREKVYKQFLRARGITLRRA-----EDFNKIVMASGYDERAYEALRAWEEAR 71
Query: 404 QLFL-SFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLT-HLTVAYLTGSTTSVDALTPK 461
++ S K ++ I+ R + R + V ++ + +T T+ +
Sbjct: 72 RIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTS------RE 125
Query: 462 VQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRA 515
++E+LE FR G+ + ++ V++EG+ VP+ + + + YIQ GR
Sbjct: 126 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 179
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 45.4 bits (107), Expect = 1e-05
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 101 PTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALR 160
V + + ++ + + ++ + YG K + K + +++V TP +LD +
Sbjct: 83 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQ-----IKALKNANIVVGTPGRILDHIN 137
Query: 161 KAFLSLDIVCFIVIDECHH 179
+ L+L V + ++DE
Sbjct: 138 RGTLNLKNVKYFILDEADE 156
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.0 bits (108), Expect = 1e-05
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 46 PRIYQLKVFE-VAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH 104
PR Q + + ++ + A TG GKT + + +A K + PT
Sbjct: 44 PRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR------CYVIFPTSL 97
Query: 105 LVHQQYDVIRVHTDF-----EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDAL 159
LV Q + IR + + E Y + + + + + + + +++ T Q L
Sbjct: 98 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY 157
Query: 160 RKAFLSLDIVCFIVIDECHH 179
R+ L FI +D+
Sbjct: 158 RE----LGHFDFIFVDDVDA 173
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.6 bits (99), Expect = 7e-05
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTT 453
Y+ +E + K+ + ++F + + L + +
Sbjct: 8 YVEVNENERFEALCRLLKNKEFYGLVFC----------KTKRDTKELASMLRDIGFKAGA 57
Query: 454 SVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRG 513
L+ +++V+ F+ K+ +L ATDV+ G+ V + + VI + LP+ SY+ G
Sbjct: 58 IHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIG 117
Query: 514 RARQHNSQ--FILMLERGNLKQRNKLFDIIRSE 544
R + + I ++ R K+ + ++ +
Sbjct: 118 RTGRAGKKGKAISIINRREYKKLRYIERAMKLK 150
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 38.9 bits (89), Expect = 0.004
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 13/186 (6%)
Query: 14 EVHSPNPPDMGSSGHDHAVDGPSSSTNSINFIPRIYQLKVFEVAKRRNTIAVLETGAGKT 73
VH P + H +G + F+ + E I E G GKT
Sbjct: 43 PVHVVVDPVLSKVLRPHQREG-------VKFLWDCVTGRRIE--NSYGCIMADEMGLGKT 93
Query: 74 MIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEW 133
+ + LI + + + + + LV Y+ + V+ G +
Sbjct: 94 LQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDE 153
Query: 134 DSQCWQKEINKNDVLVMTPQIL----LDALRKAFLSLDIVCFIVIDECHHATGNHPYTKI 189
I++ + + TP ++ L L V ++ DE H + T +
Sbjct: 154 IDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213
Query: 190 MKEFYH 195
+
Sbjct: 214 ALNSMN 219
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1604 | |||
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.94 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.94 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.92 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.91 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.88 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.88 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.86 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.86 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.86 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.86 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.85 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.85 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.85 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.85 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.85 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.84 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.84 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.83 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.83 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.83 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.82 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.81 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.81 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.81 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.8 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.78 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.78 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.72 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.7 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.7 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.69 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.68 | |
| d2nuga1 | 148 | RNase III endonuclease catalytic domain {Aquifex a | 99.67 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.67 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.64 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 99.64 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.62 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.6 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.53 | |
| d1o0wa1 | 169 | RNase III endonuclease catalytic domain {Thermotog | 99.52 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.5 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.49 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.48 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.47 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.47 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.45 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.43 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 99.32 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 99.32 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 99.3 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 99.29 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 99.27 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 99.26 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 99.24 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.24 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 99.24 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.2 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 99.17 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 99.13 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 99.11 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.88 | |
| d1whqa_ | 99 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.87 | |
| d1x47a1 | 85 | Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d2cpna1 | 76 | TAR RNA-binding protein 2 {Human (Homo sapiens) [T | 98.83 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.78 | |
| d1qu6a2 | 89 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.78 | |
| d1x48a1 | 76 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.76 | |
| d1whna_ | 128 | tRNA-dihydrouridine synthase 2-like, Dus2l (231001 | 98.75 | |
| d2dixa1 | 73 | Interferon-inducible double stranded RNA-dependent | 98.73 | |
| d1o0wa2 | 69 | RNase III, C-terminal domain {Thermotoga maritima | 98.73 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.72 | |
| d1di2a_ | 69 | Double-stranded RNA-binding protein A, second dsRB | 98.72 | |
| d1uhza_ | 89 | staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 | 98.71 | |
| d1uila_ | 113 | ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus | 98.7 | |
| d1qu6a1 | 90 | dsRNA-dependent protein kinase pkr {Human (Homo sa | 98.68 | |
| d1x49a1 | 85 | dsRNA-dependent protein kinase pkr {Mouse (Mus mus | 98.68 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.66 | |
| d2nuga2 | 68 | RNase III, C-terminal domain {Aquifex aeolicus [Ta | 98.65 | |
| d1t4oa_ | 81 | RNase III, C-terminal domain {Baker's yeast (Sacch | 98.57 | |
| d1ekza_ | 76 | Staufen, domain III {Fruit fly (Drosophila melanog | 98.53 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.52 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.46 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.37 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.36 | |
| d2b7va1 | 71 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 98.3 | |
| d2dmya1 | 84 | Spermatid perinuclear RNA-binding protein {Human ( | 98.06 | |
| d2b7ta1 | 73 | dsRNA-specific editase 1 {Rat (Rattus norvegicus) | 97.99 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 97.86 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 97.63 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.38 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.19 | |
| d1u61a_ | 127 | Hypothetical protein BC0111 {Bacillus cereus [TaxI | 97.17 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.88 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.71 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.53 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.52 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.5 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.23 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 95.19 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.66 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.21 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.63 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.19 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.93 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.4 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 91.94 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.89 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 91.7 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.8 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 90.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.88 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.09 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 88.98 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.87 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.84 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 86.87 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.83 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 84.45 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.91 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.14 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 82.31 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.85 |
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.94 E-value=7.3e-26 Score=201.12 Aligned_cols=267 Identities=19% Similarity=0.114 Sum_probs=168.3
Q ss_pred HCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
Q ss_conf 13699999089973999999999999999860799709999926844499999999852697189998788877302267
Q 000379 58 KRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQC 137 (1604)
Q Consensus 58 l~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~ 137 (1604)
.++++|+.+|||+|||++++..+.+... . .+.++++++|+++|+.|+++.++.... .+......
T Consensus 8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~---~--~~~~~lvi~Ptr~La~q~~~~l~~~~~-~~~~~~~~---------- 71 (305)
T d2bmfa2 8 KKRLTIMDLHPGAGKTKRYLPAIVREAI---K--RGLRTLILAPTRVVAAEMEEALRGLPI-RYQTPAIR---------- 71 (305)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHH---H--HTCCEEEEESSHHHHHHHHHHTTTSCC-BCCC--------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH---H--CCCEEEEECCHHHHHHHHHHHHHCCCC-CEEEEEEE----------
T ss_conf 6994999979999787999999999987---2--699899982389999999999854875-21113785----------
Q ss_pred HHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCC
Q ss_conf 88721799399984999999997227676644399993751003899499999999830--6999819999324787878
Q 000379 138 WQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASPVVRKG 215 (1604)
Q Consensus 138 w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~--~~~~prIlgLTATP~~~~~ 215 (1604)
...-....++++|++.|...... ...+.+++++|+||||++..+ ......++.. .....+++++|||+.....
T Consensus 72 -~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~---~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~ 146 (305)
T d2bmfa2 72 -AEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPA---SIAARGYISTRVEMGEAAGIFMTATPPGSRD 146 (305)
T ss_dssp -----CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred -ECCCCCCCCCCCCCHHHHHHHHC-CCCCCCEEEEEEEEEEECCHH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCEE
T ss_conf -01257653013774899999845-853154008985301112520---5788899998416653138994157876433
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 78821189999999966089343036322261106786110034358776644113456643310004579999758654
Q 000379 216 VSSAMDCEGQISELESTLDSQVFTIEDKTEMEVFVPSAKESCRFYDQSKFCGSDLKGKLEVSWSKFDASLSKLQGSQLNC 295 (1604)
Q Consensus 216 ~~~~~~~~~~i~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 295 (1604)
.. .....|....... ...
T Consensus 147 ~~------------------------------~~~~~~~~~~~~~--~~~------------------------------ 164 (305)
T d2bmfa2 147 PF------------------------------PQSNAPIMDEERE--IPE------------------------------ 164 (305)
T ss_dssp SS------------------------------CCCSSCEEEEECC--CCC------------------------------
T ss_pred EE------------------------------CCCCCCCEEEEEE--CCH------------------------------
T ss_conf 40------------------------------2347861279986--158------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 21102579999999999999999999984157799999999999565678999998756999999999999983006851
Q 000379 296 YKDMDDKHKTLRKQLSDYHAKILYCLDELGLICAYEAVKICLEKVLKAQEECEIYRQSSLQCKYFLEEVLHVIGSALPLA 375 (1604)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lG~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (1604)
T Consensus 165 -------------------------------------------------------------------------------- 164 (305)
T d2bmfa2 165 -------------------------------------------------------------------------------- 164 (305)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 01100245772111136999988999999999609999948999971178999999997419999970599997678888
Q 000379 376 DKIFLDFGFDYSKAVDLGYISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSV 455 (1604)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~ 455 (1604)
........ .+. ....+++|||+++..++.++..|.+. ++.+..+||.
T Consensus 165 -----------------~~~~~~~~----~~~----~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~l~~~---- 211 (305)
T d2bmfa2 165 -----------------RSWNSGHE----WVT----DFKGKTVWFVPSIKAGNDIAACLRKN----GKKVIQLSRK---- 211 (305)
T ss_dssp -----------------SCCSSCCH----HHH----SSCSCEEEECSCHHHHHHHHHHHHHH----TCCCEECCTT----
T ss_pred -----------------HHHHHHHH----HHH----HHCCCEEEEECCHHHHHHHHHHHHHC----CCCEEEECCC----
T ss_conf -----------------88999999----999----60799899963099999999999867----9989995783----
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE----------ECC----------CCCCHHHHHHHHHHH
Q ss_conf 989999999999997189930999804433565778742899----------907----------899977999976311
Q 000379 456 DALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCSYVI----------RFD----------LPKTVSSYIQSRGRA 515 (1604)
Q Consensus 456 ~~l~~~~r~~vl~~Fr~g~~niLIaTsvleeGIDIp~~nlVI----------~fD----------~p~s~~syiQr~GRA 515 (1604)
+. ......|++|..+++|||++++.|+|++ .+.|| .|| .|-|..+|+||+|||
T Consensus 212 --~~----~~~~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~ 284 (305)
T d2bmfa2 212 --TF----DSEYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRV 284 (305)
T ss_dssp --CH----HHHGGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred --CH----HHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCC
T ss_conf --84----7777543100011355567887257888-4089975874146573389876388044569988983241186
Q ss_pred CCCCCE--EEEEEE
Q ss_conf 135865--999981
Q 000379 516 RQHNSQ--FILMLE 527 (1604)
Q Consensus 516 rR~gs~--~i~lv~ 527 (1604)
+|.|.. +.+++.
T Consensus 285 GR~~~~~~~~~~~~ 298 (305)
T d2bmfa2 285 GRNPKNENDQYIYM 298 (305)
T ss_dssp SCSSSCCCEEEEEC
T ss_pred CCCCCCCEEEEEEC
T ss_conf 82899926999989
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=4e-25 Score=195.71 Aligned_cols=177 Identities=33% Similarity=0.464 Sum_probs=140.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC---
Q ss_conf 79999088999999961369999908997399999999999999986079970999992684449999999985269---
Q 000379 42 INFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--- 118 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~--- 118 (1604)
..++||+||.++++.++++|+|+++|||+|||+++++++...+. . .+++++|++|+++|+.||++++++.++
T Consensus 6 ~~~~pr~~Q~~~~~~~~~~n~lv~~pTGsGKT~i~~~~~~~~~~---~--~~~~il~i~P~~~L~~q~~~~~~~~~~~~~ 80 (200)
T d1wp9a1 6 DLIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT---K--YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (200)
T ss_dssp HHHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH---H--SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH---H--CCCCEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 77898899999999996399699918997288999999999997---0--698189973705777788999998633554
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 71899987888773022678872179939998499999999722767664439999375100389949999999983069
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
..+..++++..... +.......+++++|++.+.+.+....+.+..++++|+||||++..++.+..+...+... .
T Consensus 81 ~~v~~~~~~~~~~~-----~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~-~ 154 (200)
T d1wp9a1 81 EKIVALTGEKSPEE-----RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-A 154 (200)
T ss_dssp GGEEEECSCSCHHH-----HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-C
T ss_pred CCEEEEECCCCHHH-----HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHC-C
T ss_conf 20134203664567-----77765114222343202577876313311566618998621131221689999999865-8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 9981999932478787878821189999999966089343
Q 000379 199 NKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVF 238 (1604)
Q Consensus 199 ~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~ 238 (1604)
..+++++|||||... ...+.++...++....
T Consensus 155 ~~~~~l~~SATp~~~---------~~~~~~~~~~l~~~~i 185 (200)
T d1wp9a1 155 KNPLVIGLTASPGST---------PEKIMEVINNLGIEHI 185 (200)
T ss_dssp SSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCC---------HHHHHHHHHCCCCEEE
T ss_conf 998579999617973---------9999999846995499
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.91 E-value=2.4e-24 Score=189.99 Aligned_cols=126 Identities=26% Similarity=0.375 Sum_probs=113.6
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHH
Q ss_conf 99999997011578999968999965267778899841354332357888999999850999995167999878461099
Q 000379 1041 ASQLREEINCHSRNFHIPSSLILEALTTLGCCESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNST 1120 (1604)
Q Consensus 1041 a~~l~~~l~~~~~~~~i~~~~ll~AlT~~s~~~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~ 1120 (1604)
.+++++.|+|.|.| ++++.+||||+|+....||||||||||++|+++++.++|.++|+.++|.||..|+.+|||.+
T Consensus 2 l~~le~~igy~F~n----~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~ 77 (148)
T d2nuga1 2 LEQLEKKLGYTFKD----KSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 77 (148)
T ss_dssp HHHHHHHHTCCCSS----HHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHCCCCCC----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88999998986288----89999986685768875509999999888754557899850877516788777777641367
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99997837975421235577887558986677887787897766546889743456530027766898632377415779
Q 000379 1121 LHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSLRPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADC 1200 (1604)
Q Consensus 1121 L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~ 1200 (1604)
|+.+|.++||+.||+..+ ....+|++||+
T Consensus 78 La~~a~~lgl~~~i~~~~---------------------------------------------------~~~~~kilad~ 106 (148)
T d2nuga1 78 FNLLAQKLELHKFIRIKR---------------------------------------------------GKINETIIGDV 106 (148)
T ss_dssp HHHHHHTTTGGGTCBSCT---------------------------------------------------TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC---------------------------------------------------CCCHHHHHHHH
T ss_conf 665788850889987526---------------------------------------------------42010365789
Q ss_pred HHHHHHHHHHCCCHHH--HHHHH
Q ss_conf 9998888533477678--99999
Q 000379 1201 AEALIGAYYVGGGLIA--ALYMM 1221 (1604)
Q Consensus 1201 vEAliGA~~~~~G~~~--a~~~~ 1221 (1604)
|||+|||+|+|+|.+. +.+++
T Consensus 107 ~EAiiGAiylD~g~~~~~~~~~i 129 (148)
T d2nuga1 107 FEALWAAVYIDSGRDANFTRELF 129 (148)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99988776422687799999999
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.88 E-value=7.9e-21 Score=164.32 Aligned_cols=139 Identities=24% Similarity=0.368 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHHH
Q ss_conf 998899999999960-999994899997117899999999741999997059999767888--89899999999999971
Q 000379 395 ISTKLHELLQLFLSF-GKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTS--VDALTPKVQKEVLESFR 471 (1604)
Q Consensus 395 ~s~K~~~L~~iL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~--~~~l~~~~r~~vl~~Fr 471 (1604)
.++|+..|.++|... ....+.++||||+++.++..+++.|.. .++++..++|.... ..+|+.++|..+++.|+
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~ 216 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGLSQREQKLILDEFA 216 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHH
T ss_conf 8828999999999999718998489996718867999999997----699648860566433420102288999999987
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCCHHHHHHH
Q ss_conf 8993099980443356577874289990789997799997631113586-59999814679999999
Q 000379 472 GGKVNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS-QFILMLERGNLKQRNKL 537 (1604)
Q Consensus 472 ~g~~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs-~~i~lv~~~~~~~~~~l 537 (1604)
+|++++||||+++++|||+|+|++||+||+|+++..|+||+||++|.++ .+++|+..+..++...+
T Consensus 217 ~g~~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~~ee~~~~ 283 (286)
T d1wp9a2 217 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYW 283 (286)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHHHHH
T ss_pred CCCCCEEEECCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf 6998299971440203668889989995899898999999985787999889999838988999886
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.88 E-value=6.3e-22 Score=172.35 Aligned_cols=154 Identities=25% Similarity=0.284 Sum_probs=113.2
Q ss_pred CCCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC-
Q ss_conf 8799990889999999613-69999908997399999999999999986079970999992684449999999985269-
Q 000379 41 SINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD- 118 (1604)
Q Consensus 41 ~~~~~pR~yQ~e~l~~al~-~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~- 118 (1604)
...++||+||.+++..+++ ++.++++|||+|||+++.++++.+.. . ...++||+||+++|+.||++++..+..
T Consensus 109 ~~~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~----~-~~~k~Liivp~~~Lv~Q~~~~f~~~~~~ 183 (282)
T d1rifa_ 109 NKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE----N-YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp TEECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH----H-CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH----C-CCCEEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 8746564677787799985497216887115830788999998653----2-5632899976722578999999875036
Q ss_pred --CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf --718999878887730226788721799399984999999997227676644399993751003899499999999830
Q 000379 119 --FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 119 --~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
..+..+.++...+. ......+|+++|+|.+.+... ..++++++||+|||||+.+. .+..+|. .
T Consensus 184 ~~~~~~~~~~g~~~~~-------~~~~~~~i~i~t~qs~~~~~~---~~~~~f~~VIvDEaH~~~a~-~~~~il~----~ 248 (282)
T d1rifa_ 184 SHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLATGK-SISSIIS----G 248 (282)
T ss_dssp CGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCCHH-HHHHHTT----T
T ss_pred CCCCCEEECCEECCCC-------CCCCCCEEEEEEEEHHHHHCC---CCCCCCCEEEEECCCCCCCH-HHHHHHH----H
T ss_conf 5345303402002565-------233232699986403222021---00578879999899788832-0999997----4
Q ss_pred CCCCCCEEEEECCCCCCC
Q ss_conf 699981999932478787
Q 000379 197 SDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 197 ~~~~prIlgLTATP~~~~ 214 (1604)
....+.++||||||...+
T Consensus 249 ~~~~~~rlGlTaT~~~~~ 266 (282)
T d1rifa_ 249 LNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp CTTCCEEEEECSSCCTTS
T ss_pred CCCCCEEEEEEEECCCCC
T ss_conf 618896999996159987
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=2.5e-20 Score=160.69 Aligned_cols=171 Identities=18% Similarity=0.250 Sum_probs=128.9
Q ss_pred CCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC--CC
Q ss_conf 999088999999961-369999908997399999999999999986079970999992684449999999985269--71
Q 000379 44 FIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD--FE 120 (1604)
Q Consensus 44 ~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~--~~ 120 (1604)
-+|++||.++++.++ ++|+++++|||+|||++|.+++...+. ..+++++++|+++|+.|+.+.++.+.+ ..
T Consensus 24 ~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~------~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH------CCCCCEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999984999899868998511789999998762------2576033166278999999999998632443
Q ss_pred EEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCH---HHHHHHHHHHHC
Q ss_conf 89998788877302267887217993999849999999972276766443999937510038994---999999998306
Q 000379 121 VEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YTKIMKEFYHKS 197 (1604)
Q Consensus 121 v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~---~~~im~~~~~~~ 197 (1604)
+....|+..... ......+|+++|++.+...+.+....+..++++|+||||++..+.. +..++.. ....
T Consensus 98 v~~~~~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~-i~~~ 169 (202)
T d2p6ra3 98 IGISTGDYESRD-------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK-MRRM 169 (202)
T ss_dssp EEEECSSCBCCS-------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH-HHHH
T ss_pred CEEECCCCCCCC-------CCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHH-HHHC
T ss_conf 100026743322-------12232212540108998887511001103222246587775355431379999999-9865
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 99981999932478787878821189999999966089343036
Q 000379 198 DNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLDSQVFTIE 241 (1604)
Q Consensus 198 ~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~~~i~t~~ 241 (1604)
.+..++++||||... ..++..+|++..+...
T Consensus 170 ~~~~~~l~lSATl~n-------------~~~~~~~l~~~~~~s~ 200 (202)
T d2p6ra3 170 NKALRVIGLSATAPN-------------VTEIAEWLDADYYVSD 200 (202)
T ss_dssp CTTCEEEEEECCCTT-------------HHHHHHHTTCEEEECC
T ss_pred CCCCCEEEECCCCCC-------------HHHHHHHCCCCEEECC
T ss_conf 999838998178875-------------9999987089821179
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-20 Score=162.77 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=134.0
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999088999999961-36999990899739999999999999998607997099999268444999999998526---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
....|++.|..+++.++ ++|+++.++||+|||+++++++.+.+. ....+.++++++||++|+.|.++++++..
T Consensus 36 g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~---~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~ 112 (222)
T d2j0sa1 36 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD---IQVRETQALILAPTRELAVQIQKGLLALGDYM 112 (222)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCC---CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999987998699757434145440454011003---33467425775552888899999999984756
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 97189998788877302267887217993999849999999972276766443999937510038994999999998306
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++++..++|+...+... .....+.+|+|+||++|.+.+.++.+.++++.++|+||||.+... .+...+...+...
T Consensus 113 ~i~~~~~~g~~~~~~~~----~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~i~~I~~~l 187 (222)
T d2j0sa1 113 NVQCHACIGGTNVGEDI----RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYL 187 (222)
T ss_dssp TCCEEEECTTSCHHHHH----HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST-TTHHHHHHHHTTS
T ss_pred CEEEEEEEECCCCHHHH----HHHCCCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECCHHHHHHC-CCHHHHHHHHHHC
T ss_conf 34588875112102467----875148738867987577612001034442303554224676525-7399999999968
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99981999932478
Q 000379 198 DNKPKVFGMTASPV 211 (1604)
Q Consensus 198 ~~~prIlgLTATP~ 211 (1604)
+...+++.+|||..
T Consensus 188 ~~~~Q~ilfSAT~~ 201 (222)
T d2j0sa1 188 PPATQVVLISATLP 201 (222)
T ss_dssp CTTCEEEEEESCCC
T ss_pred CCCCEEEEEEEECC
T ss_conf 98887999997288
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=2.2e-20 Score=161.12 Aligned_cols=142 Identities=24% Similarity=0.276 Sum_probs=111.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9988799990889999999613-699999089973999999999999999860799709999926844499999999852
Q 000379 38 STNSINFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 38 ~~~~~~~~pR~yQ~e~l~~al~-~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~ 116 (1604)
......++||+||.++++.+++ ++.++++|||+|||++++.++.++ ++++||+||++.|+.||.++++.+
T Consensus 63 ~~~~~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~Liv~p~~~L~~q~~~~~~~~ 133 (206)
T d2fz4a1 63 PYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF 133 (206)
T ss_dssp CCCCCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHH---------CCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 77789998499999999999967990999578998264377678774---------672457872422489999999861
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 69718999878887730226788721799399984999999997227676644399993751003899499999999830
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
....++.+.|... ...+|+++|++.+......- ..++++||+|||||+... .+.++++.+
T Consensus 134 ~~~~~~~~~~~~~-------------~~~~i~i~t~~~~~~~~~~~---~~~~~lvIiDEaH~~~a~-~~~~i~~~~--- 193 (206)
T d2fz4a1 134 GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAE-SYVQIAQMS--- 193 (206)
T ss_dssp CGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTT-THHHHHHTC---
T ss_pred CCCCHHHCCCCCC-------------CCCCCCCCEEHHHHHHHHHH---CCCCCEEEEECCEECCCH-HHHHHHHCC---
T ss_conf 5511110146532-------------10210012322555536765---775779999898217837-999998506---
Q ss_pred CCCCCCEEEEECCC
Q ss_conf 69998199993247
Q 000379 197 SDNKPKVFGMTASP 210 (1604)
Q Consensus 197 ~~~~prIlgLTATP 210 (1604)
..+++||||||+
T Consensus 194 --~~~~~lgLTATl 205 (206)
T d2fz4a1 194 --IAPFRLGLTATF 205 (206)
T ss_dssp --CCSEEEEEEESC
T ss_pred --CCCCEEEEECCC
T ss_conf --898489995589
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.3e-20 Score=162.80 Aligned_cols=133 Identities=23% Similarity=0.408 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
..|+..|.++|+.. +..++||||+++.+++.++..|... ++.+..+||. |+.++|..+++.|++|..
T Consensus 17 ~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~------~~~~~r~~~~~~f~~~~~ 83 (171)
T d1s2ma2 17 RQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHAR------MKQQERNKVFHEFRQGKV 83 (171)
T ss_dssp GGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTT------SCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEEEEEHHHHHHHHHHCC----CCCCCCCCCC------CCHHHHHHHHHHCCCCCC
T ss_conf 99999999999848---9876599972241356767765013----3443334333------211456655321136863
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHH
Q ss_conf 099980443356577874289990789997799997631113586--599998146799999999999
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS--QFILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs--~~i~lv~~~~~~~~~~l~~~~ 541 (1604)
++||||+++++|+|+|.|++||+||+|+++..|+||.||++|.|. ..+.|+.+++....+.+++.+
T Consensus 84 ~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l 151 (171)
T d1s2ma2 84 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQEL 151 (171)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 11012017654104662489996487602777877755314179961799985789999999999997
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=7.9e-21 Score=164.33 Aligned_cols=132 Identities=20% Similarity=0.431 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
.+|+..|.++|.. .+.++||||+++.+++.+++.|+.. ++.+..++|. ++..+|..++++|++|+.
T Consensus 14 ~~K~~~L~~ll~~----~~~k~IIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~------~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 14 NERFEALCRLLKN----KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGD------LSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp GGHHHHHHHHHCS----TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSS------SCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHCC----CCCCEEEEECCHHHHHHHHHHHCCC----CCCCCCCCCC------CHHHHHHHHHHHHHCCCC
T ss_conf 9999999999726----9998999979448998887652334----3222233331------001134566655412111
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHH
Q ss_conf 099980443356577874289990789997799997631113586--599998146799999999999
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS--QFILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs--~~i~lv~~~~~~~~~~l~~~~ 541 (1604)
++||||+++++|||+|.|++||+||+|+++.+|+||.||++|.|+ ..+.++.+.+....+.+++.+
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~ 147 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAM 147 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 25530367765432212767999649999999998877637479973699998668999999999997
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3e-20 Score=160.11 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=132.3
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC--
Q ss_conf 79999088999999961-369999908997399999999999999986079970999992684449999999985269--
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTD-- 118 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~-- 118 (1604)
.-..|++.|.++++.++ ++|+++.++||+|||+++++++.+... ....+.++++++|+++|+.|+.+.++....
T Consensus 20 g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~---~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~ 96 (207)
T d1t6na_ 20 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE---PVTGQVSVLVMCHTRELAFQISKEYERFSKYM 96 (207)
T ss_dssp TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCC---CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEC---CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999984998577722333212001344032102---46778628998512203678999999998438
Q ss_pred --CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf --718999878887730226788721799399984999999997227676644399993751003899499999999830
Q 000379 119 --FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 119 --~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
+.+..++|+...... ........++|+|+||+.+.+.+..+.+.++++.++|+||||++.....+...+......
T Consensus 97 ~~~~~~~~~g~~~~~~~---~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~ 173 (207)
T d1t6na_ 97 PNVKVAVFFGGLSIKKD---EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173 (207)
T ss_dssp TTCCEEEESCCSCHHHH---HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCHHHH---HHHHHHCCCCEEEECCCHHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 87516788456548899---999873689989908546432025882554303034023444454137859999999974
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 699981999932478
Q 000379 197 SDNKPKVFGMTASPV 211 (1604)
Q Consensus 197 ~~~~prIlgLTATP~ 211 (1604)
.+...+++++|||..
T Consensus 174 ~~~~~Q~il~SAT~~ 188 (207)
T d1t6na_ 174 TPHEKQVMMFSATLS 188 (207)
T ss_dssp SCSSSEEEEEESCCC
T ss_pred CCCCCEEEEEEEECC
T ss_conf 889887999940088
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=1.7e-20 Score=161.94 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=128.8
Q ss_pred CCCCCHHHHHHHHHHHC--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 99990889999999613--6999990899739999999999999998607997099999268444999999998526---
Q 000379 43 NFIPRIYQLKVFEVAKR--RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al~--~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
-..|++.|.++++.+++ .|+|+.+|||+|||+++++++.+... ...+.+++++|||++|+.|+.+.++...
T Consensus 24 ~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~----~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~ 99 (208)
T d1hv8a1 24 FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----ENNGIEAIILTPTRELAIQVADEIESLKGNK 99 (208)
T ss_dssp CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----SSSSCCEEEECSCHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECHHCCCCCCEEECCCCCCCC----CCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999999999849997464410034444002033321111----2467506998403332203345566650367
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 97189998788877302267887217993999849999999972276766443999937510038994999999998306
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
+.++...+|+..... ....+.+++|+|+||+.|.+.+.++.+.++++.++|+||||++.+.+.+ ..+.......
T Consensus 100 ~~~v~~~~g~~~~~~-----~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~-~~i~~I~~~~ 173 (208)
T d1hv8a1 100 NLKIAKIYGGKAIYP-----QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI-KDVEKILNAC 173 (208)
T ss_dssp CCCEEEECTTSCHHH-----HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH-HHHHHHHHTS
T ss_pred CEEEEEEECCCCHHH-----HHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCH-HHHHHHHHHC
T ss_conf 707998528978699-----9986089999998869999999769977666869999884876108871-7799999858
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99981999932478
Q 000379 198 DNKPKVFGMTASPV 211 (1604)
Q Consensus 198 ~~~prIlgLTATP~ 211 (1604)
+...+++++|||..
T Consensus 174 ~~~~Q~i~~SAT~~ 187 (208)
T d1hv8a1 174 NKDKRILLFSATMP 187 (208)
T ss_dssp CSSCEEEEECSSCC
T ss_pred CCCCEEEEEECCCC
T ss_conf 99885999970279
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.7e-20 Score=161.99 Aligned_cols=132 Identities=22% Similarity=0.416 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99889999999996099999489999711789999999974199999705999976788889899999999999971899
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~ 474 (1604)
...|+..|.+++.... ..++||||+++.+++.++..|... ++.+..+||. ++.++|..++++|++|+
T Consensus 18 ~~~K~~~L~~ll~~~~---~~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~------~~~~~r~~~~~~fk~g~ 84 (168)
T d2j0sa2 18 EEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGD------MPQKERESIMKEFRSGA 84 (168)
T ss_dssp TTHHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTT------SCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCC---CCCEEEEEEEHHHHHHHHHHHHHC----CCCHHHHHHH------HHHHHHHHHHHHHHCCC
T ss_conf 6999999999998478---776399960588878888776630----4431333112------25789999999986388
Q ss_pred CEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHH
Q ss_conf 3099980443356577874289990789997799997631113586--5999981467999999999
Q 000379 475 VNLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS--QFILMLERGNLKQRNKLFD 539 (1604)
Q Consensus 475 ~niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs--~~i~lv~~~~~~~~~~l~~ 539 (1604)
.++||||+++++|||+|.+++||+||+|++..+|+||.||++|.|+ ..+.|+.+.+....+.+++
T Consensus 85 ~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~ 151 (168)
T d2j0sa2 85 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 151 (168)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHH
T ss_pred CCEEECCCHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 4077414410056553576568993377678788766104452699747999977899999999999
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=8.9e-21 Score=163.98 Aligned_cols=133 Identities=22% Similarity=0.384 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
..|+..|.++++... ..++||||+++.+++.++..|... ++.+..+||. |+..+|.+++++|+.|+.
T Consensus 12 e~K~~~L~~ll~~~~---~~k~iIF~~s~~~~~~l~~~L~~~----~~~~~~~~~~------~~~~~r~~~l~~f~~~~~ 78 (162)
T d1fuka_ 12 EYKYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSD------LPQQERDTIMKEFRSGSS 78 (162)
T ss_dssp GGHHHHHHHHHHHTT---CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTT------SCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEEEECHHHHHHHHHHHC----CCEEEEECCC------CCHHHHHHHHHHHHHCCC
T ss_conf 789999999998489---885899998870699999888654----9559995167------752367789998764036
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCE--EEEEEECCCHHHHHHHHHHH
Q ss_conf 0999804433565778742899907899977999976311135865--99998146799999999999
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~~~~~~~~l~~~~ 541 (1604)
++||||+++++|||+|.+++||+||+|+++..|+||.||++|.|.. .+.|+++++......+++.+
T Consensus 79 ~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~ 146 (162)
T d1fuka_ 79 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 146 (162)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHS
T ss_pred CEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 45651562344655777508999345146778876501445479864799981799999999999998
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.84 E-value=6.1e-20 Score=157.87 Aligned_cols=122 Identities=21% Similarity=0.354 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 88999999999609999948999971178999999997419999970599997678888989999999999997189930
Q 000379 397 TKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVN 476 (1604)
Q Consensus 397 ~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~n 476 (1604)
.++..|+..+.+.. ..+.++||||+++.+++.++..|+. .++.+..+||. |++.+|.+++++|++|+++
T Consensus 15 ~qvd~ll~~i~~~~-~~~~~~iif~~~~~~~~~~~~~l~~----~g~~~~~~hg~------~~~~eR~~~l~~Fr~g~~~ 83 (181)
T d1t5la2 15 GQIDDLIGEIRERV-ERNERTLVTTLTKKMAEDLTDYLKE----AGIKVAYLHSE------IKTLERIEIIRDLRLGKYD 83 (181)
T ss_dssp THHHHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS------CCHHHHHHHHHHHHHTSCS
T ss_pred CCHHHHHHHHHHHH-HCCCEEEEEEEHHHHHHHHHHHHHH----CCCCEEEECCC------CCHHHHHHHHHHHHCCCCC
T ss_conf 84999999999999-6298289996103466788887876----79404674178------6388999999999789988
Q ss_pred EEEECCCCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 999804433565778742899907899-----97799997631113586599998146
Q 000379 477 LLFATDVIEEGMHVPNCSYVIRFDLPK-----TVSSYIQSRGRARQHNSQFILMLERG 529 (1604)
Q Consensus 477 iLIaTsvleeGIDIp~~nlVI~fD~p~-----s~~syiQr~GRArR~gs~~i~lv~~~ 529 (1604)
+||||+++++|||+|.|++||+||+|. +..+|+||.|||+|.|..+.++....
T Consensus 84 vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~~~ 141 (181)
T d1t5la2 84 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADT 141 (181)
T ss_dssp EEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSS
T ss_pred EEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 8976247771389999788999569964554358999999876245667456740211
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1e-19 Score=156.22 Aligned_cols=130 Identities=21% Similarity=0.366 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
..|+..|+++|.... +.++||||+++..++.|...|.. .++.+..+||. ++..+|..++++|++|+.
T Consensus 15 ~~k~~~L~~~l~~~~---~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~~------~~~~~r~~~~~~f~~g~~ 81 (200)
T d1oywa3 15 FKPLDQLMRYVQEQR---GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAG------LENNVRADVQEKFQRDDL 81 (200)
T ss_dssp SSHHHHHHHHHHHTT---TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------SCHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHCC---CCCEEEEEEEEHHHHHHHHHHCC----CCCEEEEECCC------CCHHHHHHHHHHHHCCCC
T ss_conf 768999999998569---99889998223116776443244----78535775388------717778999988741343
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHH
Q ss_conf 099980443356577874289990789997799997631113586--599998146799999999999
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNS--QFILMLERGNLKQRNKLFDII 541 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs--~~i~lv~~~~~~~~~~l~~~~ 541 (1604)
++||||+++++|||+|++++||+||+|+++..|+||.|||+|.|. ..++|+.+++. ..+.+.+
T Consensus 82 ~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~---~~l~~~i 146 (200)
T d1oywa3 82 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM---AWLRRCL 146 (200)
T ss_dssp SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH---HHHHHHH
T ss_pred EEEEECCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHH---HHHHHHH
T ss_conf 0787402345316887888999877751168898875453137777258775178898---8887634
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.2e-20 Score=157.81 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=130.7
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---C
Q ss_conf 9999088999999961-36999990899739999999999999998607997099999268444999999998526---9
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~---~ 118 (1604)
-..|++.|..+++.++ ++|+++.++||+|||++|++++.+.+. ......++++++||++|+.|.+++++... +
T Consensus 32 ~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~---~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~ 108 (218)
T d2g9na1 32 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE---LDLKATQALVLAPTRELAQQIQKVVMALGDYMG 108 (218)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCC---TTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHEEC---CCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999976998899725625445543310222000---366675189982451123567777765124432
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 71899987888773022678872179939998499999999722767664439999375100389949999999983069
Q 000379 119 FEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSD 198 (1604)
Q Consensus 119 ~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~~ 198 (1604)
+.+..+.++........ ......++|+|+||+.+.+.+..+...++.+.++|+||||.+.+. .+...+...+...+
T Consensus 109 ~~~~~~~~~~~~~~~~~---~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~~~~Il~~~~ 184 (218)
T d2g9na1 109 ASCHACIGGTNVRAEVQ---KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLN 184 (218)
T ss_dssp CCEEEECC--CCCSTTT---SSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT-TCHHHHHHHHHHSC
T ss_pred EEEEEEECCCCHHHHHH---HHHCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEEECCHHHCC-CHHHHHHHHHHHCC
T ss_conf 16876302453067788---876488779996781577788628832465348986402102127-60899999999689
Q ss_pred CCCCEEEEECCCC
Q ss_conf 9981999932478
Q 000379 199 NKPKVFGMTASPV 211 (1604)
Q Consensus 199 ~~prIlgLTATP~ 211 (1604)
...+++++|||..
T Consensus 185 ~~~Q~il~SAT~~ 197 (218)
T d2g9na1 185 SNTQVVLLSATMP 197 (218)
T ss_dssp TTCEEEEEESCCC
T ss_pred CCCEEEEEEECCC
T ss_conf 9986999980599
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.1e-19 Score=153.92 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=130.6
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999088999999961-36999990899739999999999999998607997099999268444999999998526---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
....|++.|.++++.++ ++|+++.++||+|||+++++++.+... ....+..+++++|+++|+.|.++.+....
T Consensus 22 g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~---~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~ 98 (206)
T d1veca_ 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLD---LKKDNIQAMVIVPTRELALQVSQICIQVSKHM 98 (206)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCC---TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCC---CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999986998874436740011212464132021---02567524998403016689999999875115
Q ss_pred -CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf -9718999878887730226788721799399984999999997227676644399993751003899499999999830
Q 000379 118 -DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 118 -~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
+..+....|+..... .....-..++|+|+||+++.+.+.++.+.++++.++|+||||.+.+. .+...+...+..
T Consensus 99 ~~~~~~~~~g~~~~~~----~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~-~f~~~i~~I~~~ 173 (206)
T d1veca_ 99 GGAKVMATTGGTNLRD----DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILT 173 (206)
T ss_dssp SSCCEEEECSSSCHHH----HHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST-TTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHH----HHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHH
T ss_conf 6764212367740888----99988751670894796331123311000155406998414200112-229999999986
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 699981999932478
Q 000379 197 SDNKPKVFGMTASPV 211 (1604)
Q Consensus 197 ~~~~prIlgLTATP~ 211 (1604)
.+...+++++|||..
T Consensus 174 ~~~~~Q~~l~SAT~~ 188 (206)
T d1veca_ 174 LPKNRQILLYSATFP 188 (206)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCCCCEEEEEEECCC
T ss_conf 899887999994499
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.9e-19 Score=154.21 Aligned_cols=121 Identities=15% Similarity=0.322 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
+.|...|.+++.... ..++||||+++.+++.|.+.|.. .++.+..+||. |+..+|.+++++|++|+.
T Consensus 12 ~~K~~~L~~ll~~~~---~~k~iIF~~~~~~~~~l~~~L~~----~~~~~~~ihg~------~~~~~r~~~l~~F~~g~~ 78 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVLE---FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRG------MPQEERLSRYQQFKDFQR 78 (168)
T ss_dssp GGHHHHHHHHHHHSC---CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------SCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCC---CCEEEEEEEEEECCHHHHHHHCC----CCCCCCCCCCC------CCHHHHHHHHHHHCCCCC
T ss_conf 999999999998389---98199998034411013334301----24443211122------210222211221112221
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCE--EEEEEECC
Q ss_conf 0999804433565778742899907899977999976311135865--99998146
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~ 529 (1604)
++||||+++++|+|+|.|++||+||+|+++.+|+||.||++|.|++ ++.|+.+.
T Consensus 79 ~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~ 134 (168)
T d1t5ia_ 79 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 134 (168)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred EEEECCCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 14412330110012044134432211322145765422315289851899998846
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=6.5e-19 Score=150.36 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=129.3
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---
Q ss_conf 79999088999999961-36999990899739999999999999998607997099999268444999999998526---
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT--- 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~--- 117 (1604)
....|++.|.++++.++ ++|+++.++||+|||+++++++.+.+. ....+..+++++||++|+.|....+....
T Consensus 29 g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~---~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~ 105 (212)
T d1qdea_ 29 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID---TSVKAPQALMLAPTRELALQIQKVVMALAFHM 105 (212)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC---TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH---CCCCCCCEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999986998774456530100466766676650---36778614897044888666665400122233
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 97189998788877302267887217993999849999999972276766443999937510038994999999998306
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
...+....|+..... ....+++++|+|+||+.+.+.+..+.+.++++.++|+||||.+... .+...+...+...
T Consensus 106 ~~~~~~~~~~~~~~~-----~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~-~f~~~v~~I~~~~ 179 (212)
T d1qdea_ 106 DIKVHACIGGTSFVE-----DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLL 179 (212)
T ss_dssp CCCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT-TCHHHHHHHHHHS
T ss_pred CCCEEEEEECCCHHH-----HHHHHCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEHHHHHHCCC-CHHHHHHHHHHHC
T ss_conf 211136753266167-----9998469919997997552223467353686407753024453144-4399999999858
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99981999932478
Q 000379 198 DNKPKVFGMTASPV 211 (1604)
Q Consensus 198 ~~~prIlgLTATP~ 211 (1604)
+...+++++|||..
T Consensus 180 ~~~~Q~vl~SAT~~ 193 (212)
T d1qdea_ 180 PPTTQVVLLSATMP 193 (212)
T ss_dssp CTTCEEEEEESSCC
T ss_pred CCCCEEEEEEEECC
T ss_conf 98886999986189
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=1.9e-19 Score=154.27 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=112.6
Q ss_pred CCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC---C
Q ss_conf 99990889999999613-6999990899739999999999999998607997099999268444999999998526---9
Q 000379 43 NFIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---D 118 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al~-~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~---~ 118 (1604)
..+|+++|.++++.+++ +|+++++|||+|||+++++++..... .+++++|++|+++|+.||++++++++ +
T Consensus 41 ~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~------~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 41 VGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL------KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp TCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHT------TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH------HCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 59998999999999977997799926897699999999999987------458389994449999999999999999849
Q ss_pred CCEEEEEC--CCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHH-HHHHHHH--
Q ss_conf 71899987--888773022678872179939998499999999722767664439999375100389949-9999999--
Q 000379 119 FEVEEYYG--AKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPY-TKIMKEF-- 193 (1604)
Q Consensus 119 ~~v~~~~G--~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~-~~im~~~-- 193 (1604)
+.+...++ ......+....+.......+|+|+||+.|.+ ....+.++++||+||||++.+.+.. .+....+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~----~~~~~~~~~~vVvDE~d~~l~~~~~~~~~~~~~g~ 190 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK----HYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGF 190 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH----CSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCEEEEEEEEECCCCHHHHHHHHCCCCCCCEECCCHHHHHH----HHHHCCCCCEEEEECHHHHHHCCCCHHHHHHHCCC
T ss_conf 94699985542254123565554034444232268699997----54434778889999926664334214578886187
Q ss_pred H-------HHCCCCCCEEEEECCCCCC
Q ss_conf 8-------3069998199993247878
Q 000379 194 Y-------HKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 194 ~-------~~~~~~prIlgLTATP~~~ 213 (1604)
. ...+..++++++|||+...
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 191 HYDLKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSCCC
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 399999986278888599990789945
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.81 E-value=7.2e-19 Score=150.03 Aligned_cols=167 Identities=21% Similarity=0.208 Sum_probs=129.5
Q ss_pred CCCCCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHH------HHCCCCEEEEEEECCHHHHHHHHH
Q ss_conf 98879999088999999961-36999990899739999999999999998------607997099999268444999999
Q 000379 39 TNSINFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAI------KSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 39 ~~~~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~------~~~~~~~~vliLvPtv~Lv~Qq~~ 111 (1604)
.......|++.|.++++.++ ++|+++.++||+|||+++++++.+.+... .......++++|+|+++|+.|+.+
T Consensus 37 ~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~ 116 (238)
T d1wrba1 37 LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILS 116 (238)
T ss_dssp TTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHCCHHE
T ss_conf 98799989899999836642799789987777775113199999999722211124567778369995351443010010
Q ss_pred HHHHH---CCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 99852---697189998788877302267887217993999849999999972276766443999937510038994999
Q 000379 112 VIRVH---TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 112 ~i~~~---~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~ 188 (1604)
++... .++++..++|+..... ........++|+|+||+.|.+.+..+.+.+.++.++|+||||++... .+..
T Consensus 117 ~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~-~f~~ 191 (238)
T d1wrba1 117 ESQKFSLNTPLRSCVVYGGADTHS----QIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDM-GFEP 191 (238)
T ss_dssp HHHHHHTTSSCCEEEECSSSCSHH----HHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHT-TCHH
T ss_pred EEEECCCCCCCEEEEEECCCHHHH----HHHHCCCCCCEEECCHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHH-CCHH
T ss_conf 111003578827999944520357----77640368734406778877677269265266412442034455432-1399
Q ss_pred HHHHHHHHC----CCCCCEEEEECCC
Q ss_conf 999998306----9998199993247
Q 000379 189 IMKEFYHKS----DNKPKVFGMTASP 210 (1604)
Q Consensus 189 im~~~~~~~----~~~prIlgLTATP 210 (1604)
-+....... ...+|++.+|||.
T Consensus 192 ~i~~Il~~~~~~~~~~~Q~il~SAT~ 217 (238)
T d1wrba1 192 QIRKIIEESNMPSGINRQTLMFSATF 217 (238)
T ss_dssp HHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEEEEC
T ss_conf 99999998438998998899996327
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=2.3e-18 Score=146.37 Aligned_cols=121 Identities=19% Similarity=0.311 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 89999999996099999489999711789999999974199999705999976788889899999999999971899309
Q 000379 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNL 477 (1604)
Q Consensus 398 K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ni 477 (1604)
.+..|++.+.+.. ..+.++||||.++.+++.+...|.. .++++.++||. |++.+|.+++++|++|+++|
T Consensus 16 qv~dll~~i~~~~-~~g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg~------~~~~eR~~~l~~F~~G~~~v 84 (174)
T d1c4oa2 16 QILDLMEGIRERA-ARGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHE------LDAFKRQALIRDLRLGHYDC 84 (174)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT------CCHHHHHHHHHHHHTTSCSE
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEEECC------CCHHHHHHHHHHHHCCCEEE
T ss_conf 8999999999998-6598389998230379999999986----59725898615------54188999999997798699
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCC-----CHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 99804433565778742899907899-----97799997631113586599998146
Q 000379 478 LFATDVIEEGMHVPNCSYVIRFDLPK-----TVSSYIQSRGRARQHNSQFILMLERG 529 (1604)
Q Consensus 478 LIaTsvleeGIDIp~~nlVI~fD~p~-----s~~syiQr~GRArR~gs~~i~lv~~~ 529 (1604)
||||+++++|||+|++++||+||+|. +..+|+|+.|||+|.+...+++....
T Consensus 85 LVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~ 141 (174)
T d1c4oa2 85 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADR 141 (174)
T ss_dssp EEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSS
T ss_pred EEEEEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 996356421136777738998036544553016779988614430478706896267
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.4e-18 Score=145.07 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9990889999999613-699999089973999999999999999860799709999926844499999999852697189
Q 000379 44 FIPRIYQLKVFEVAKR-RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 44 ~~pR~yQ~e~l~~al~-~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~ 122 (1604)
-.+|+||.++++.++. +|+++++|||+|||+++.+++.. ..+++++++|+++|+.|+.+.++.... ...
T Consensus 24 ~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---------~~~~~~~v~P~~~L~~q~~~~l~~~~~-~~~ 93 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------LNGLTVVVSPLISLMKDQVDQLQANGV-AAA 93 (206)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------SSSEEEEECSCHHHHHHHHHHHHHTTC-CEE
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH---------CCCCEEEECCCHHHHHHHHHHHHHHCC-CCC
T ss_conf 9999899999999986998899867889975231202554---------267247862640666668999976356-653
Q ss_pred EEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCH---HH-HHHHHHHHHCC
Q ss_conf 998788877302267887217993999849999999972276766443999937510038994---99-99999983069
Q 000379 123 EYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHP---YT-KIMKEFYHKSD 198 (1604)
Q Consensus 123 ~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~---~~-~im~~~~~~~~ 198 (1604)
...+...................+|+++|++.+.....+.......+.++|+||||++..... +. ..+..... ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~-~~ 172 (206)
T d1oywa2 94 CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ-RF 172 (206)
T ss_dssp EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHH-HC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEEECHHHHCHHHCCCCHHHEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHH-HC
T ss_conf 22111124520567788762884699970301100010242210022243000125650226650899999999997-58
Q ss_pred CCCCEEEEECCCC
Q ss_conf 9981999932478
Q 000379 199 NKPKVFGMTASPV 211 (1604)
Q Consensus 199 ~~prIlgLTATP~ 211 (1604)
+..+++|||||+.
T Consensus 173 ~~~~ii~lSATl~ 185 (206)
T d1oywa2 173 PTLPFMALTATAD 185 (206)
T ss_dssp TTSCEEEEESCCC
T ss_pred CCCCEEEEEECCC
T ss_conf 9983599994899
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.1e-17 Score=141.40 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=133.4
Q ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH---C
Q ss_conf 79999088999999961-3699999089973999999999999999860799709999926844499999999852---6
Q 000379 42 INFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH---T 117 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~---~ 117 (1604)
.-..|++.|.++++.++ ++|+++.++||+|||+++++++.+... ....+..+++++|+..++.|........ .
T Consensus 20 g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (206)
T d1s2ma1 20 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK---PKLNKIQALIMVPTRELALQTSQVVRTLGKHC 96 (206)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCC---CCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999986998898658762144443033110023---22234432032351121133544333204446
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 97189998788877302267887217993999849999999972276766443999937510038994999999998306
Q 000379 118 DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS 197 (1604)
Q Consensus 118 ~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~ 197 (1604)
++++...+|+..... ........++|+|+||+.|.+.+..+.+.++++.++|+||||++.+. .|...+...+...
T Consensus 97 ~~~~~~~~g~~~~~~----~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~-~f~~~v~~I~~~l 171 (206)
T d1s2ma1 97 GISCMVTTGGTNLRD----DILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR-DFKTIIEQILSFL 171 (206)
T ss_dssp TCCEEEECSSSCHHH----HHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH-HHHHHHHHHHTTS
T ss_pred CEEEEEECCCCCHHH----HHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEECHHHHHHH-HHHHHHHHHHHHC
T ss_conf 706885237630146----77775256549998975333334321010122207776221344300-2477999999868
Q ss_pred CCCCCEEEEECCC
Q ss_conf 9998199993247
Q 000379 198 DNKPKVFGMTASP 210 (1604)
Q Consensus 198 ~~~prIlgLTATP 210 (1604)
+...|++++|||.
T Consensus 172 ~~~~Q~il~SATl 184 (206)
T d1s2ma1 172 PPTHQSLLFSATF 184 (206)
T ss_dssp CSSCEEEEEESCC
T ss_pred CCCCEEEEEEEEC
T ss_conf 9888899998738
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.72 E-value=4.2e-17 Score=137.10 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=124.0
Q ss_pred CCCCCHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC----
Q ss_conf 9999088999999961-36999990899739999999999999998607997099999268444999999998526----
Q 000379 43 NFIPRIYQLKVFEVAK-RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT---- 117 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al-~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~---- 117 (1604)
...|++.|.++++.++ ++|+++.+|||+|||+++++++.+... ........++++|+..++.|.+..+....
T Consensus 21 ~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (209)
T d1q0ua_ 21 FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK---PERAEVQAVITAPTRELATQIYHETLKITKFCP 97 (209)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCC---TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999987997686624442133144431001245---444444422223333214778888876412233
Q ss_pred ---CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf ---97189998788877302267887217993999849999999972276766443999937510038994999999998
Q 000379 118 ---DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFY 194 (1604)
Q Consensus 118 ---~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~ 194 (1604)
...+....|..+... .-.....+++|+|+||+.+.+.+.+....++++.++|+||||++.+. .+...+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~-~f~~~v~~I~ 172 (209)
T d1q0ua_ 98 KDRMIVARCLIGGTDKQK----ALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDM-GFITDVDQIA 172 (209)
T ss_dssp GGGCCCEEEECCCSHHHH----TTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT-TCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHH----HHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCC-CCHHHHHHHH
T ss_conf 343211000256203677----88874667549983471012233210134455338999602301131-4099999999
Q ss_pred HHCCCCCCEEEEECCC
Q ss_conf 3069998199993247
Q 000379 195 HKSDNKPKVFGMTASP 210 (1604)
Q Consensus 195 ~~~~~~prIlgLTATP 210 (1604)
...++..|++++|||.
T Consensus 173 ~~~~~~~Q~il~SATl 188 (209)
T d1q0ua_ 173 ARMPKDLQMLVFSATI 188 (209)
T ss_dssp HTSCTTCEEEEEESCC
T ss_pred HHCCCCCEEEEEECCC
T ss_conf 9789988799997219
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=9.8e-17 Score=134.43 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=121.5
Q ss_pred CCCCCCCCHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf 88799990889999999613-------69999908997399999999999999986079970999992684449999999
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pR~yQ~e~l~~al~-------~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~ 112 (1604)
....|+++.-|..+++.+.+ .+.+++.+||+|||.+|+.++...+. .+..+++++||..|+.|+++.
T Consensus 78 ~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~------~g~q~~~m~Pt~~La~Qh~~~ 151 (264)
T d1gm5a3 78 KSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------AGFQTAFMVPTSILAIQHYRR 151 (264)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------HTSCEEEECSCHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH------CCCCEEEEEEHHHHHHHHHHH
T ss_conf 40046678037888999998762367531566635355665999999999885------135505874047665789999
Q ss_pred HHHHC---CCCEEEEECCCCCCCCCHHHHHHHC-CCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 98526---9718999878887730226788721-7993999849999999972276766443999937510038994999
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEI-NKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~-~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~ 188 (1604)
+++.+ ++.+..++|+..... ..+.|.... ++.+|+|+|...+. ..+.+.+++++|+||-|+..- .+
T Consensus 152 ~~~~f~~~~~~v~~l~~~~~~~~-r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv----~Q 221 (264)
T d1gm5a3 152 TVESFSKFNIHVALLIGATTPSE-KEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGV----KQ 221 (264)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHH-HHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC--------
T ss_pred HHHHHHHCCCCCEEECCCCCHHH-HHHHHHHHHCCCCCEEEEEHHHHC-----CCCCCCCCCEEEECCCCCCCH----HH
T ss_conf 98862012312111011013699-999999997799799996538854-----898745562256324210024----34
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9999983069998199993247878
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVVR 213 (1604)
Q Consensus 189 im~~~~~~~~~~prIlgLTATP~~~ 213 (1604)
-. -.......+++|.|||||+..
T Consensus 222 r~--~l~~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 222 RE--ALMNKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp -C--CCCSSSSCCCEEEEESSCCCH
T ss_pred HH--HHHHHCCCCCEEEEECCCCHH
T ss_conf 79--999718699989997988999
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.5e-15 Score=125.78 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=122.6
Q ss_pred CCCCCCCCHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
Q ss_conf 88799990889999999613-------69999908997399999999999999986079970999992684449999999
Q 000379 40 NSINFIPRIYQLKVFEVAKR-------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDV 112 (1604)
Q Consensus 40 ~~~~~~pR~yQ~e~l~~al~-------~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~ 112 (1604)
....|++++-|..+++.+.. .+.+++.+||+|||.+|+.++...+. .++.+++|+|+..|+.|.++.
T Consensus 50 ~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~------~g~qv~~l~Pt~~La~Q~~~~ 123 (233)
T d2eyqa3 50 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVPTTLLAQQHYDN 123 (233)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEECCHHHHHHHHHHH
T ss_conf 40011346048889999999985457667089838887728999999999997------689569974688767999999
Q ss_pred HHHHC---CCCEEEEECCCCCCCCCHHHHHHHCC-CCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 98526---97189998788877302267887217-993999849999999972276766443999937510038994999
Q 000379 113 IRVHT---DFEVEEYYGAKGVDEWDSQCWQKEIN-KNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK 188 (1604)
Q Consensus 113 i~~~~---~~~v~~~~G~~~~d~~~~~~w~~~~~-~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~ 188 (1604)
|+..+ +..+..++|...... ..+.|..... ..+|+|+|...+ ..++.+.++.|||+||-|.. .+.+
T Consensus 124 ~~~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~~~g~~~iviGths~l-----~~~~~f~~LgLiIiDEeH~f----g~kQ 193 (233)
T d2eyqa3 124 FRDRFANWPVRIEMISRFRSAKE-QTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHRF----GVRH 193 (233)
T ss_dssp HHHHSTTTTCCEEEESTTSCHHH-HHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEESGGGS----CHHH
T ss_pred HHHHHHHCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCEEEEEHHHH-----CCCCCCCCCCCEEEECHHHH----HHHH
T ss_conf 99987247977976357653126-99999999679978897420233-----06776555463022231233----2578
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 999998306999819999324787
Q 000379 189 IMKEFYHKSDNKPKVFGMTASPVV 212 (1604)
Q Consensus 189 im~~~~~~~~~~prIlgLTATP~~ 212 (1604)
...- ......++++.|||||+.
T Consensus 194 ~~~l--~~~~~~~~~l~~SATPip 215 (233)
T d2eyqa3 194 KERI--KAMRANVDILTLTATPIP 215 (233)
T ss_dssp HHHH--HHHHTTSEEEEEESSCCC
T ss_pred HHHH--HHHCCCCCEEEEECCHHH
T ss_conf 9999--961889988999655109
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.69 E-value=1.4e-15 Score=126.07 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=112.6
Q ss_pred CCCCCCCHHHHHHHHHHH-----CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 879999088999999961-----369999908997399999999999999986079970999992684449999999985
Q 000379 41 SINFIPRIYQLKVFEVAK-----RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 41 ~~~~~pR~yQ~e~l~~al-----~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~ 115 (1604)
....++|+||.+++..+. +.++|+++++|+|||++++.++.++.. .+...+++++||. .++.||.+++..
T Consensus 8 ~~~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~----~~~~~~~LIv~p~-~l~~~W~~e~~~ 82 (230)
T d1z63a1 8 NIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK----ENELTPSLVICPL-SVLKNWEEELSK 82 (230)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH----TTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CCCCCCCCEECCH-HHHHHHHHHHHH
T ss_conf 65045069999999999986216998799858998869999873554421----2355644110535-542677777776
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 26971899987888773022678872179939998499999999722767664439999375100389949999999983
Q 000379 116 HTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYH 195 (1604)
Q Consensus 116 ~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~ 195 (1604)
++.......++...... ...+.+|+++|++.+.+... +.--.+.+||+||||++........ +.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~--------~~~~~~vvi~~~~~~~~~~~---l~~~~~~~vI~DEah~~k~~~s~~~--~~~-~ 148 (230)
T d1z63a1 83 FAPHLRFAVFHEDRSKI--------KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIF--KAV-K 148 (230)
T ss_dssp HCTTSCEEECSSSTTSC--------CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHH--HHH-H
T ss_pred HCCCCCCEEECCCCCHH--------HCCCCCEEEEEHHHHHHHHH---HHCCCCEEEEEEHHHCCCCCCHHHH--HHH-H
T ss_conf 40254410101421000--------02576889854999986888---7416513999971003443220556--665-4
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 069998199993247878787882118999999996608
Q 000379 196 KSDNKPKVFGMTASPVVRKGVSSAMDCEGQISELESTLD 234 (1604)
Q Consensus 196 ~~~~~prIlgLTATP~~~~~~~~~~~~~~~i~~Le~~l~ 234 (1604)
.. ...++++|||||+.++ ...+..+-..++
T Consensus 149 ~l-~a~~r~~LTgTPi~n~--------~~dl~~ll~~l~ 178 (230)
T d1z63a1 149 EL-KSKYRIALTGTPIENK--------VDDLWSIMTFLN 178 (230)
T ss_dssp TS-CEEEEEEECSSCSTTC--------HHHHHHHHHHHS
T ss_pred HH-CCCEEEEEECCHHHHH--------HHHHHHHHHHHC
T ss_conf 40-4655799725267767--------888998887628
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.68 E-value=5.5e-16 Score=128.95 Aligned_cols=163 Identities=16% Similarity=0.174 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHHH----------CCCEEEEECCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHH
Q ss_conf 9999088999999961----------3699999089973999999999999999860-7997099999268444999999
Q 000379 43 NFIPRIYQLKVFEVAK----------RRNTIAVLETGAGKTMIAVMLIKDIAQAIKS-NGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al----------~~n~Iv~~~TGsGKTliailli~~~l~~~~~-~~~~~~vliLvPtv~Lv~Qq~~ 111 (1604)
.-.+|+||.+++..+. +.++|+++++|+|||+.++.++..+...... ....+++||+||. .|+.||.+
T Consensus 53 ~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC-HHHHHHHH
T ss_conf 01020999999999999877354126874698747878899999999999998460116887737998050-45578999
Q ss_pred HHHHHCC--CCEEEEECCCCCCCCCHHH--HHH---HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 9985269--7189998788877302267--887---21799399984999999997227676644399993751003899
Q 000379 112 VIRVHTD--FEVEEYYGAKGVDEWDSQC--WQK---EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNH 184 (1604)
Q Consensus 112 ~i~~~~~--~~v~~~~G~~~~d~~~~~~--w~~---~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~ 184 (1604)
+|.++++ ..+..++|+..... .... |.. .....+|+++|++.+..... .+.-.++.+||+||||++....
T Consensus 132 Ei~k~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (298)
T d1z3ix2 132 EVGKWLGGRVQPVAIDGGSKDEI-DSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (298)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHH-HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHCCCCEEEEEEECCHHHHH-HHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--CCCCCCEEEEECCCCCCCCCCC
T ss_conf 88763577525999968627778-88998765303766661399986123222200--0334211454114232201322
Q ss_pred HH-HHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 49-9999999830699981999932478787
Q 000379 185 PY-TKIMKEFYHKSDNKPKVFGMTASPVVRK 214 (1604)
Q Consensus 185 ~~-~~im~~~~~~~~~~prIlgLTATP~~~~ 214 (1604)
.- ...+..+ ...++++|||||+.++
T Consensus 209 s~~~~a~~~l-----~~~~rllLTGTPi~N~ 234 (298)
T d1z3ix2 209 NQTYLALNSM-----NAQRRVLISGTPIQND 234 (298)
T ss_dssp HHHHHHHHHH-----CCSEEEEECSSCSGGG
T ss_pred CHHHHHHHCC-----CCCEEEEECCHHHHHH
T ss_conf 0345644213-----4112565226077666
|
| >d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: RNase III endonuclease catalytic domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.67 E-value=9.5e-17 Score=134.52 Aligned_cols=112 Identities=23% Similarity=0.309 Sum_probs=90.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHH----------------HHHHHHCCCCHHHHHHHHHHHHCCC-----
Q ss_conf 9999998198549888999988167988987627----------------8877701369577999999988099-----
Q 000379 1254 IKDIESKIGYEFTVKFLLQEAITHASVQEFYCYQ----------------NLYKHLQHCSTLLLSQITEYVKSFP----- 1312 (1604)
Q Consensus 1254 ~~~le~~lgy~F~~~~lL~~AlTH~S~~~~~~ye----------------~L~~~~~~~~~~~~~~i~~~~~~~~----- 1312 (1604)
++.+|++|||+|+|+.||.+||||+||....+|| +|+..+|..+++.++.++..+..-.
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~~ 81 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLL 81 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999998986288899999866857688755099999998887545578998508775167887777776413676657
Q ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf ----99997899999999722457899987621650798868999998862136458
Q 000379 1313 ----KPGETTDSGPSMKAPKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILSPIVT 1365 (1604)
Q Consensus 1313 ----~~~~~~~~~~~~~~~k~l~D~~EaliGAi~lDsg~~~~~~~~~~~~~l~~~i~ 1365 (1604)
+..+--........+|+++|+|||++||||+|+|+++..+++++.+++.+.+.
T Consensus 82 a~~lgl~~~i~~~~~~~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~~i~ 138 (148)
T d2nuga1 82 AQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDIL 138 (148)
T ss_dssp HHTTTGGGTCBSCTTCCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 888508899875264201036578999988776422687799999999999999999
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.67 E-value=3.6e-15 Score=122.93 Aligned_cols=142 Identities=12% Similarity=0.226 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99988999999999609999948999971178999999997419999970599997678888989999999999997189
Q 000379 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1604)
Q Consensus 394 ~~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g 473 (1604)
..+.|+..|.++|.......+.|+|||++.+.+...|.++|.. .++.+..++|. ++.++|..++++|+++
T Consensus 98 ~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~----~g~~~~~l~G~------~~~~~R~~~i~~F~~~ 167 (346)
T d1z3ix1 98 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN----RRYLYVRLDGT------MSIKKRAKIVERFNNP 167 (346)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH----HTCCEEEECSS------CCHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH----HHCCCCCCCCC------HHHHHHHHHHHHHHCC
T ss_conf 0178999999999998875189516886301456799999763----00241101110------0278899999865102
Q ss_pred CCE---EEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCE----EEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 930---999804433565778742899907899977999976311135865----9999814679999999999997775
Q 000379 474 KVN---LLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQRNKLFDIIRSERS 546 (1604)
Q Consensus 474 ~~n---iLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~----~i~lv~~~~~~~~~~l~~~~~~e~~ 546 (1604)
... +|++|.++++|||++.++.||.||++||+..+.|+.||+.|.|++ ++.|+..+..+++ +.+.+.....
T Consensus 168 ~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~--i~~~~~~K~~ 245 (346)
T d1z3ix1 168 SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEK--ILQRQAHKKA 245 (346)
T ss_dssp TCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHH--HHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHH--HHHHHHHHHH
T ss_conf 34330254033144433565643079994578861558676333403489984389998738989999--9999999999
Q ss_pred H
Q ss_conf 2
Q 000379 547 V 547 (1604)
Q Consensus 547 ~ 547 (1604)
+
T Consensus 246 l 246 (346)
T d1z3ix1 246 L 246 (346)
T ss_dssp T
T ss_pred H
T ss_conf 9
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.64 E-value=7.1e-16 Score=128.12 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=90.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 69999908997399999999999999986079970999992684449999999985269718999878887730226788
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQ 139 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~ 139 (1604)
+..|+.+|||+|||.++...+.+ .+.++++++|++.|++||++.+.+.++...+...++.....
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~---------~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAA---------QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITT------- 72 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHT---------TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECC-------
T ss_pred CEEEEEECCCCCHHHHHHHHHHH---------CCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------
T ss_conf 88999968877999999999998---------69939997676999999999999985202464300122113-------
Q ss_pred HHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH--CCCCCCEEEEECCC
Q ss_conf 721799399984999999997227676644399993751003899499999999830--69998199993247
Q 000379 140 KEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK--SDNKPKVFGMTASP 210 (1604)
Q Consensus 140 ~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~--~~~~prIlgLTATP 210 (1604)
...++++|++.+.... ...+.++++||+||||++... .+. .+...... ....++++||||||
T Consensus 73 ----~~~~~~~~~~~~~~~~---~~~~~~~~~vIiDE~H~~~~~-~~~-~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 73 ----GSPITYSTYGKFLADG---GCSGGAYDIIICDECHSTDAT-SIL-GIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ----CCSEEEEEHHHHHHTT---GGGGCCCSEEEEETTTCCSHH-HHH-HHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ----CCCEEEEEEEEECCCC---CHHHHCCCEEEEECCCCCCHH-HHH-HHHHHHHHHHHCCCCCEEEEECCC
T ss_conf ----4422788641000235---302415999998255535887-899-999999999877997299992799
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=99.64 E-value=1.4e-16 Score=133.30 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=90.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89984135433235788899999985099999516799987846109999997837975421235577887558986677
Q 000379 1073 ESFSMERLELLGDSVLKYAVSCHLFLTYPKKHEGQLSARRSWAVCNSTLHKLGTDRKLQGYIRDSAFDPRRWVAPGQLSL 1152 (1604)
Q Consensus 1073 ~~~n~ErLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~ 1152 (1604)
...|...|||||||+|+++++.|+|..+| .+||.||.+|+.+|||.+|++++.+++|+.||.......-+|--..
T Consensus 4 ~~~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Grn~---- 78 (127)
T d1u61a_ 4 KQLNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNA---- 78 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCC----
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC----
T ss_conf 54484778987899999999999997189-9901799999999249999999999076777640334310167755----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 887787897766546889743456530027766898632377415779999888853347767899999992
Q 000379 1153 RPVPCECGVDTLEVPLDGKFFTQDTKVVVGKPCDMGHRWMGSKTIADCAEALIGAYYVGGGLIAALYMMKWL 1224 (1604)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~iAD~vEAliGA~~~~~G~~~a~~~~~~l 1224 (1604)
. ......+.....+.+||++||||||+|+++|++.+..++.+.
T Consensus 79 ---------------------~--------~~~~~k~~~~~~y~lad~fEAliGalYLd~~~e~~~~~i~~~ 121 (127)
T d1u61a_ 79 ---------------------N--------SGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 121 (127)
T ss_dssp ---------------------C--------SSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------------C--------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ---------------------4--------777776665147776059999999999918889999999999
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=2.7e-16 Score=131.22 Aligned_cols=116 Identities=21% Similarity=0.365 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
+.|+..|.+++.... +.++||||++..++..|.+.|.. ..+||. ++..+|.++++.|++|++
T Consensus 78 ~~K~~~l~~ll~~~~---~~k~lvf~~~~~~~~~l~~~l~~---------~~i~g~------~~~~~R~~~l~~F~~~~~ 139 (200)
T d2fwra1 78 KNKIRKLREILERHR---KDKIIIFTRHNELVYRISKVFLI---------PAITHR------TSREEREEILEGFRTGRF 139 (200)
T ss_dssp SHHHHHHHHHHHHTS---SSCBCCBCSCHHHHHHHHHHTTC---------CBCCSS------SCSHHHHTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHCCC---------CEEECC------CCHHHHHHHHHHHHCCCE
T ss_conf 889999999999677---98079994759999998763385---------525579------999999999988634870
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCE-----EEEEEECC
Q ss_conf 0999804433565778742899907899977999976311135865-----99998146
Q 000379 476 NLLFATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ-----FILMLERG 529 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~-----~i~lv~~~ 529 (1604)
++||||+++++|||+|.|++||.||+|+|+..|+||.||+.|.|+. ++.|+..+
T Consensus 140 ~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~ 198 (200)
T d2fwra1 140 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198 (200)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 35430210210257998888999679979999999987448799998679999995299
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.60 E-value=1.7e-15 Score=125.37 Aligned_cols=132 Identities=18% Similarity=0.110 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH
Q ss_conf 36999990899739999999999999998607997099999268444999999998526971899987888773022678
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCW 138 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w 138 (1604)
++++++++|||+|||.+++..+..... . .+.++++++|++.+++|+.+.+.. ..+.........
T Consensus 7 ~~~~il~~~tGsGKT~~~~~~~~~~~~---~--~~~~vli~~p~~~l~~q~~~~~~~---~~~~~~~~~~~~-------- 70 (140)
T d1yksa1 7 GMTTVLDFHPGAGKTRRFLPQILAECA---R--RRLRTLVLAPTRVVLSEMKEAFHG---LDVKFHTQAFSA-------- 70 (140)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHH---H--TTCCEEEEESSHHHHHHHHHHTTT---SCEEEESSCCCC--------
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHH---H--CCCEEEEEECCHHHHHHHHHHHHH---HHHHHCCCCCCC--------
T ss_conf 996799817998855999999999753---1--385156531210688999987532---432201120001--------
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHH-HHHHHHHHCCCCCCEEEEECCC
Q ss_conf 87217993999849999999972276766443999937510038994999-9999983069998199993247
Q 000379 139 QKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTK-IMKEFYHKSDNKPKVFGMTASP 210 (1604)
Q Consensus 139 ~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~-im~~~~~~~~~~prIlgLTATP 210 (1604)
.......+.++|.+.+..... ....+.++++||+||||++..+....+ .+..+. .....++++|||||
T Consensus 71 -~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~--~~~~~~~l~lTATP 139 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA--RANESATILMTATP 139 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH--HTTSCEEEEECSSC
T ss_pred -CCCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH--HCCCCCEEEEECCC
T ss_conf -223333002426999999984-1665464208997543346754399999999982--57999989998299
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=1.4e-14 Score=118.60 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC-CEEEEE
Q ss_conf 4579742114344468730358999870999999214764134432011369865445202389999994387-338982
Q 000379 1493 MTVGTPVVAPINMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEF-GNVECN 1571 (1604)
Q Consensus 1493 ~~~~~~~~~~~~~~~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~-~~~~~~ 1571 (1604)
+.++.+.....+|+..|+|+.||||||+++.+ |.|++.+ .||+|. +.|+|+|.|.+... +.+.+.
T Consensus 11 e~vDl~~~~~g~wt~~n~Ks~LqE~~Qk~k~~-p~Y~i~~----------~Gp~H~---~~F~~~v~i~~~~~~~~~~~~ 76 (113)
T d1uila_ 11 EEVDLNAGLHGNWTLENAKARLNQYFQKEKIQ-GEYKYTQ----------VGPDHN---RSFIAEMTIYIKQLGRRIFAR 76 (113)
T ss_dssp CCCCSSHHHHCCCCHHHHHHHHHHHHHHSCCC-CCCEEEE----------ESCSTT---CEEEEEEEEEETTTTEEEEEE
T ss_pred HHCCHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CCEEEEE----------ECCCCC---CEEEEEEEEEEECCCCEEEEE
T ss_conf 33363212358970147999999999867999-9659855----------426889---959999999421259767764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCC
Q ss_conf 899777441265499999999987491642479
Q 000379 1572 GDPRADKKSSFDSAALIMLHELERQGKIIISSS 1604 (1604)
Q Consensus 1572 g~~~~sKK~A~~~AA~~~l~~l~~~~~~~~~~~ 1604 (1604)
|.| +|||+|+|.||+.||+.|.++|.|...+|
T Consensus 77 G~G-~sKK~AEq~AA~~~l~~L~~~g~i~~~~s 108 (113)
T d1uila_ 77 EHG-SNKKLAAQSCALSLVRQLYHLGVIEAYSS 108 (113)
T ss_dssp CCC-SSHHHHHHHHHHHHHHHHHHHTSSCCCCC
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 062-60999999999999999997488676878
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.50 E-value=3.5e-14 Score=115.80 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 94899997117899999999741999997059999767888898999999999999718993099980443356577874
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNC 493 (1604)
Q Consensus 414 ~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~niLIaTsvleeGIDIp~~ 493 (1604)
..++||||+++..++.|+..|+.. ++.+..+||. |+.. .|++|+.++||||+++++||| |++
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~------~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v 96 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRG------LDVS-------VIPTNGDVVVVATDALMTGFT-GDF 96 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTT------CCSC-------CCTTSSCEEEEESSSSCSSSC-CCB
T ss_pred CCCEEEEECCHHHHHHHHHHHHCC----CCCHHHHHCC------CHHH-------HHHHHHCCEEEHHHHHHHCCC-CCC
T ss_conf 998999909589999999998352----6320334235------3054-------432331121410688870254-334
Q ss_pred CEEEECC----CCCCHHHHHHHHHHHCCCCC-EEEEEEECC
Q ss_conf 2899907----89997799997631113586-599998146
Q 000379 494 SYVIRFD----LPKTVSSYIQSRGRARQHNS-QFILMLERG 529 (1604)
Q Consensus 494 nlVI~fD----~p~s~~syiQr~GRArR~gs-~~i~lv~~~ 529 (1604)
++||++| +|.+..+|+||.|||+| |. ..+.|+.++
T Consensus 97 ~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g~~G~~~~i~~~ 136 (138)
T d1jr6a_ 97 DSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 136 (138)
T ss_dssp SEEEECSEETTEECCHHHHHHHHTTBCS-SSCEEEEECCSS
T ss_pred CEEEEEEECCCCCCCHHHHHHHHCCCCC-CCCCEEEEECCC
T ss_conf 6177777647799999999868623048-998289997379
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.49 E-value=1.8e-13 Score=110.59 Aligned_cols=130 Identities=17% Similarity=0.249 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99988999999999609999948999971178999999997419999970599997678888989999999999997189
Q 000379 394 YISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGG 473 (1604)
Q Consensus 394 ~~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g 473 (1604)
..++|+..|.+++.... ..+.++||||+.+.+.+.+...+... .+..+..++|. ++..+|.+++++|.++
T Consensus 66 ~~S~K~~~l~~~l~~~~-~~g~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~i~G~------~~~~~R~~~i~~F~~~ 135 (244)
T d1z5za1 66 RRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGE------LSKKERDDIISKFQNN 135 (244)
T ss_dssp TTCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTT------SCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCEEEEEECEEHHHHHHHHHHHH---CCCEEEEEECC------CCHHCCCHHHHHHHCC
T ss_conf 12068999999887641-46662599960100677899998761---35128999666------4200011045544301
Q ss_pred C-CEEE-EECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCE----EEEEEECCCHHH
Q ss_conf 9-3099-9804433565778742899907899977999976311135865----999981467999
Q 000379 474 K-VNLL-FATDVIEEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQ----FILMLERGNLKQ 533 (1604)
Q Consensus 474 ~-~niL-IaTsvleeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~----~i~lv~~~~~~~ 533 (1604)
. ..+| ++|.++++|+|++.|+.||.||++||+..+.|+.||+.|.|++ ++.|+..+..++
T Consensus 136 ~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee 201 (244)
T d1z5za1 136 PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 201 (244)
T ss_dssp TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred CCCHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCEEEEEEEECCCHHH
T ss_conf 210010143112356621120014320471244677765425015649997259999861899999
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=8.8e-14 Score=112.82 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=85.0
Q ss_pred CEEEEEECHHHHHHHHHHHHHHC----CCCCC----------------------EEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 48999971178999999997419----99997----------------------05999976788889899999999999
Q 000379 415 VLCIIFVERIIAAKVVERFVKKV----PFLTH----------------------LTVAYLTGSTTSVDALTPKVQKEVLE 468 (1604)
Q Consensus 415 ~k~IIFv~~r~ta~~L~~~L~~~----~~~~~----------------------~~~~~l~G~~~~~~~l~~~~r~~vl~ 468 (1604)
.++||||.+|..++.++..|... ..... ..+++.||. |+..+|..+.+
T Consensus 41 ~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~------l~~~~r~~ie~ 114 (201)
T d2p6ra4 41 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG------LLNGQRRVVED 114 (201)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT------SCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH------HHHHHHHHHHH
T ss_conf 968999689999999999999988753022578999887512355699999985117888777------62566899999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCEEEE-------CCCCCCHHHHHHHHHHHCCCCC----EEEEEEECC
Q ss_conf 971899309998044335657787428999-------0789997799997631113586----599998146
Q 000379 469 SFRGGKVNLLFATDVIEEGMHVPNCSYVIR-------FDLPKTVSSYIQSRGRARQHNS----QFILMLERG 529 (1604)
Q Consensus 469 ~Fr~g~~niLIaTsvleeGIDIp~~nlVI~-------fD~p~s~~syiQr~GRArR~gs----~~i~lv~~~ 529 (1604)
.|++|.+++||||+.+++|||+|+.++||. ++.|.+..+|+|+.|||||.|. ..++|+...
T Consensus 115 ~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~ 186 (201)
T d2p6ra4 115 AFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 186 (201)
T ss_dssp HHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHCCCCEEEEECHHHHHHCCCCCCEEEEECCEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf 986798149970418875237997469995142046874779999999875446899999725999996898
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=8.6e-13 Score=105.61 Aligned_cols=108 Identities=17% Similarity=0.287 Sum_probs=94.3
Q ss_pred CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 99948999971178999999997419999970599997678888989999999999997189930999804433565778
Q 000379 412 STQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVP 491 (1604)
Q Consensus 412 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~niLIaTsvleeGIDIp 491 (1604)
+.+.++.+.|+.....+.+...+++. ++.+++..+||+ |+..++++++.+|++|+++|||||.|.|.|||||
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~--~p~~~i~~lHGk------m~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvp 100 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 100 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSS------CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHHH--CCCEEEEEEEEC------CCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCC
T ss_conf 86995999971752126688888874--773379999722------6888899999999829862688755344046899
Q ss_pred CCCEEEECCCCC-CHHHHHHHHHHHCCCCCE-EEEEEE
Q ss_conf 742899907899-977999976311135865-999981
Q 000379 492 NCSYVIRFDLPK-TVSSYIQSRGRARQHNSQ-FILMLE 527 (1604)
Q Consensus 492 ~~nlVI~fD~p~-s~~syiQr~GRArR~gs~-~i~lv~ 527 (1604)
++|++|..+... .+.++-|.|||++|.+.+ |.+|+.
T Consensus 101 nA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 101 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred CCCEEEEECCHHCCCCCCCCCCCEEEECCCCCEEEEEE
T ss_conf 87699871300033112223023355367665489985
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1e-15 Score=127.01 Aligned_cols=102 Identities=16% Similarity=0.262 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
..|+..|.++|...+ .++||||+++.+|+.++.+|... +||. +++.+|.+++++|++|++
T Consensus 11 ~~~~~~l~~~l~~~~----~~~iif~~~~~~~~~l~~~l~~~----------~hg~------~~~~~R~~~~~~f~~g~~ 70 (248)
T d1gkub2 11 DESISTLSSILEKLG----TGGIIYARTGEEAEEIYESLKNK----------FRIG------IVTATKKGDYEKFVEGEI 70 (248)
T ss_dssp CCCTTTTHHHHTTSC----SCEEEEESSHHHHHHHHHTTTTS----------SCEE------ECTTSSSHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHH----------CCCC------CCHHHHHHHHHHHHHCCC
T ss_conf 368999999999839----79899989878999999999873----------4378------999999999999982798
Q ss_pred EEEEEC----CCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 099980----44335657787-42899907899977999976311135865
Q 000379 476 NLLFAT----DVIEEGMHVPN-CSYVIRFDLPKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 476 niLIaT----svleeGIDIp~-~nlVI~fD~p~s~~syiQr~GRArR~gs~ 521 (1604)
++|||| +++++|||+|. +++||+||+|+ |+|+.||++|.|..
T Consensus 71 ~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~ 117 (248)
T d1gkub2 71 DHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQ 117 (248)
T ss_dssp SEEEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHH
T ss_pred EEEEEECCCCCHHHHCCCCCCCCCEEEEECCCC----CHHHHHHHHCCCCC
T ss_conf 599996666024651367665401899967974----00005456316745
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.4e-14 Score=118.63 Aligned_cols=132 Identities=17% Similarity=0.294 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECHHHHH--------HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999960999994899997117899--------999999741999997059999767888898999999999999
Q 000379 398 KLHELLQLFLSFGKSTQVLCIIFVERIIAA--------KVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLES 469 (1604)
Q Consensus 398 K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta--------~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~ 469 (1604)
+...+++.+.... ..+.++.+.|+..... ......+.+. .++++++..+||. |++++++.++++
T Consensus 14 ~~~~v~~~I~~el-~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~-~~p~~~v~~lHG~------m~~~eke~~m~~ 85 (206)
T d1gm5a4 14 RVNEVYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE-VFPEFKLGLMHGR------LSQEEKDRVMLE 85 (206)
T ss_dssp THHHHHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGS-CC---CBCCCCSS------SCCSCSHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEEEC------CCHHHHHHHHHH
T ss_conf 2999999999999-7499889997514455321101367899999985-0899728898603------659999999999
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHCCCCCE--EEEEEECCCHHHHHHH
Q ss_conf 7189930999804433565778742899907899-977999976311135865--9999814679999999
Q 000379 470 FRGGKVNLLFATDVIEEGMHVPNCSYVIRFDLPK-TVSSYIQSRGRARQHNSQ--FILMLERGNLKQRNKL 537 (1604)
Q Consensus 470 Fr~g~~niLIaTsvleeGIDIp~~nlVI~fD~p~-s~~syiQr~GRArR~gs~--~i~lv~~~~~~~~~~l 537 (1604)
|++|+++|||||+|+|.|||+|++++||+++.+. ...++.|.+||++|.+.+ +++++.+.+....+++
T Consensus 86 F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 86 FAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 156 (206)
T ss_dssp HTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred HHCCCEEEEEEEHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHEEECCCCCEEEEEECCCCCCCHHHH
T ss_conf 97798789997024310455267848999804886377887652021212125405765224322111344
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.43 E-value=8.7e-14 Score=112.86 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=86.4
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHH----------HHHHHHHHCCCCEEEEECCC
Q ss_conf 94899997117899999999741999997059999767888898999999----------99999971899309998044
Q 000379 414 QVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQ----------KEVLESFRGGKVNLLFATDV 483 (1604)
Q Consensus 414 ~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r----------~~vl~~Fr~g~~niLIaTsv 483 (1604)
+.++||||++|..++.|...|+.. ++++..+||. +++..+ .++++.|+.|+.+++|+|++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~----Gi~a~~~Hgg------lsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~ 105 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRG------LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNT 105 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT------SCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHC----CCCEEEEECC------CHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 998999879689999999999777----9878997589------407778731205777899999886599838999862
Q ss_pred CCC---CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 335---6577874289990789997799997631113586599998
Q 000379 484 IEE---GMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHNSQFILML 526 (1604)
Q Consensus 484 lee---GIDIp~~nlVI~fD~p~s~~syiQr~GRArR~gs~~i~lv 526 (1604)
+++ |+|++.+.+||+||.|.|..+|+||+||++|.....+.++
T Consensus 106 ~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGRGr~G~~~~l 151 (299)
T d1a1va2 106 CVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFV 151 (299)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEEEEES
T ss_pred HHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 0104787887851699968999898998762144379998169897
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=99.32 E-value=8.6e-13 Score=105.60 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73035899987099999921476413443201136986544520238999999438733898289977744126549999
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588 (1604)
Q Consensus 1509 ~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1588 (1604)
.|++.||||||+++|++|.|+++++ +||+|+ +.|+|.|.++ + ..+.|.| +|||.|++.||..
T Consensus 1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~---------~G~~h~---~~F~~~v~v~----~-~~~~g~g-~sKK~Aeq~AA~~ 62 (69)
T d1di2a_ 1 MPVGSLQELAVQKGWRLPEYTVAQE---------SGPPHK---REFTITCRVE----T-FVETGSG-TSKQVAKRVAAEK 62 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEE---------ESCGGG---CEEEEEEEET----T-EEEEEEE-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CCEEEEEEEE----E-EEEECCC-CCHHHHHHHHHHH
T ss_conf 9838999999975999983899984---------378777---4168999986----6-7876376-7299999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000379 1589 MLHELE 1594 (1604)
Q Consensus 1589 ~l~~l~ 1594 (1604)
||..|+
T Consensus 63 aL~~L~ 68 (69)
T d1di2a_ 63 LLTKFK 68 (69)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999845
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=1.4e-12 Score=104.01 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..||++.||||||+++|++|.|+++++ +||+|+ +.|+|.|.|. +. ...|.+ +|||.||+.||
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~~-~~~g~g-~SKK~Ae~~AA 66 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSE---------RGMPRR---REFVMQVKVG----NE-VATGTG-PNKKIAKKNAA 66 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEE---------ESCSTT---CEEEEEEEET----TE-EEEEEE-SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCC---------CCCCCC---EEEEEEEEEE----EE-ECCCCC-HHHHHHHHHHH
T ss_conf 888199999999964999997985024---------456775---0699999996----56-402320-37899999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q 000379 1587 LIMLHELER 1595 (1604)
Q Consensus 1587 ~~~l~~l~~ 1595 (1604)
+.||..|..
T Consensus 67 ~~aL~~l~~ 75 (89)
T d1uhza_ 67 EAMLLQLGY 75 (89)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHCC
T ss_conf 999999676
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5e-12 Score=100.01 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87303589998709999992147641344320113698654452023899999943873389828997774412654999
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1587 (1604)
.+|++.||||||++++ .|.|+++++ +||+|+ +.|+|.|.++ + ..+.|.| +|||.||+.||+
T Consensus 2 K~Pis~L~E~~qk~~~-~p~y~~~~~---------~Gp~h~---~~F~~~v~v~----~-~~~~g~g-~sKK~Aeq~AA~ 62 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKN-IPVYECERS---------DVQIHV---PTFTFRVTVG----D-ITCTGEG-TSKKLAKHRAAE 62 (73)
T ss_dssp CCHHHHHHHHHHHTTC-CCEEEEEEE---------ECSSSS---CEEEEEEEET----T-EEEEECS-SCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCEEEEEEE---------ECCCCC---CEEEEEEEEE----E-EEEEECC-CCHHHHHHHHHH
T ss_conf 5877999999996798-988998653---------589887---1799999998----8-9988614-659999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999874
Q 000379 1588 IMLHELERQ 1596 (1604)
Q Consensus 1588 ~~l~~l~~~ 1596 (1604)
.||+.|+..
T Consensus 63 ~al~~L~~~ 71 (73)
T d2dixa1 63 AAINILKAN 71 (73)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
T ss_conf 999998742
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.29 E-value=2.2e-12 Score=102.66 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..+|++.||||||+++|+ |.|+++++ +||+|+ +.|+|+|+++ + ..+.|.| +|||.||+.||
T Consensus 6 ~k~Pvs~L~E~~q~~~~~-~~y~~~~~---------~G~~h~---~~F~~~v~v~----~-~~~~g~G-~SKK~Aeq~AA 66 (76)
T d1ekza_ 6 KKSPISQVHEIGIKRNMT-VHFKVLRE---------EGPAHM---KNFITACIVG----S-IVTEGEG-NGKKVSKKRAA 66 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSS---------CCSSSC---SCSSEEEEET----T-EEEEECC-CSTTSSSHHHH
T ss_pred CCCHHHHHHHHHHHCCCC-CEEEEEEE---------ECCCCC---EEEEEEEEEE----E-EEEEECC-CCHHHHHHHHH
T ss_conf 889899999999967989-70899971---------379887---0899999982----1-4766056-76999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999874
Q 000379 1587 LIMLHELERQ 1596 (1604)
Q Consensus 1587 ~~~l~~l~~~ 1596 (1604)
..||..|+++
T Consensus 67 ~~al~~L~~l 76 (76)
T d1ekza_ 67 EKMLVELQKL 76 (76)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
T ss_conf 9999998709
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.1e-12 Score=102.74 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..|+|+.||||||+++++ |.|++.+ +||+|. +.|+|.|.|... .+.+.|.| +|||.|++.||
T Consensus 5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~~----------~G~~h~---~~F~~~v~v~g~---~~~~~g~g-~sKK~AEq~AA 66 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMT-PAYEIRA----------VGNKNR---QKFMCEVRVEGF---NYAGMGNS-TNKKDAQSNAA 66 (99)
T ss_dssp CCSSHHHHHHHHHHTTCC-CEEEEEE----------EECSSS---EEEEEEEECTTC---SCCEEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCC-CEEEEEC----------CCCCCC---CEEEEEEEECCC---CCEECCCC-CCHHHHHHHHH
T ss_conf 766889999999868999-8699840----------247888---608999985165---43100577-52889999999
Q ss_pred HHHHHHHHHCCEEECCC
Q ss_conf 99999998749164247
Q 000379 1587 LIMLHELERQGKIIISS 1603 (1604)
Q Consensus 1587 ~~~l~~l~~~~~~~~~~ 1603 (1604)
+.||+.|.+.|.+..++
T Consensus 67 ~~al~~L~~~~~~~~~~ 83 (99)
T d1whqa_ 67 RDFVNYLVRINEVKSEE 83 (99)
T ss_dssp HHHHHHHHHHTSSCTTT
T ss_pred HHHHHHHHHCCCCCHHH
T ss_conf 99999999859998544
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.1e-12 Score=101.52 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..|||+.||||||+++|++|.|+++++ +|++|. +.|+|.|.+. ...+.|.| +|||.|++.||
T Consensus 8 ~~npks~LqE~~q~~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~-----~~~~~g~G-~SKK~Aeq~AA 69 (76)
T d2cpna1 8 ECNPVGALQELVVQKGWRLPEYTVTQE---------SGPAHR---KEFTMTCRVE-----RFIEIGSG-TSKKLAKRNAA 69 (76)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEE---------ECCSSS---CEEEEEEEET-----TEEEEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CCEEEEEEEC-----CEEECCCC-CCHHHHHHHHH
T ss_conf 889789999999974999997998664---------326777---5279999954-----22411364-52999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000379 1587 LIMLHEL 1593 (1604)
Q Consensus 1587 ~~~l~~l 1593 (1604)
+.||..|
T Consensus 70 ~~aL~~L 76 (76)
T d2cpna1 70 AKMLLRV 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 9999869
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=3.6e-12 Score=101.07 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73035899987099999921476413443201136986544520238999999438733898289977744126549999
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588 (1604)
Q Consensus 1509 ~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1588 (1604)
|+|+.||||||+++|++|.|+++++ +||+|. +.|++.|.++ +...+.|.| +|||.|++.||+.
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~~~~~~g~g-~sKK~Aeq~AA~~ 63 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRT---------EKNDGD---RIFVVEVRVN----GKTIATGKG-RTKKEAEKEAARI 63 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEE---------ECCTTS---CEEEEEEEET----TEEEEEEEE-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CEEEEEEEEC----CEEEEEEEE-CCHHHHHHHHHHH
T ss_conf 9178999999974999997999996---------688888---4299999989----999999872-8999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 000379 1589 MLHEL 1593 (1604)
Q Consensus 1589 ~l~~l 1593 (1604)
||+.|
T Consensus 64 aL~~L 68 (69)
T d1o0wa2 64 AYEKL 68 (69)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99986
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.9e-12 Score=100.78 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHH
Q ss_conf 44687303589998709999992147641344320113698654452023899999943873389828997774412654
Q 000379 1505 MKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDS 1584 (1604)
Q Consensus 1505 ~~~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~ 1584 (1604)
...+++++.||||||++++ .|.|+++++ +||+|+ +.|+|.|.|+...++ .|.| +|||.||+.
T Consensus 10 ~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~---------~Gp~h~---~~F~v~v~v~~~~~~----~g~G-~sKK~Aeq~ 71 (90)
T d1qu6a1 10 LSAGFFMEELNTYRQKQGV-VLKYQELPN---------SGPPHD---RRFTFQVIIDGREFP----EGEG-RSKKEAKNA 71 (90)
T ss_dssp SSSCSHHHHHHHHHHHHTC-CCEEEEEES---------CBTTTB---CCEEEEEESSSSCCC----EEEC-CSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCC-CCCEEEEEE---------ECCCCC---CEEEEEEEECCEEEE----CCCC-CCHHHHHHH
T ss_conf 9977899999999998299-985799871---------079887---447999997756640----5678-769999999
Q ss_pred HHHHHHHHHHHCCEE
Q ss_conf 999999999874916
Q 000379 1585 AALIMLHELERQGKI 1599 (1604)
Q Consensus 1585 AA~~~l~~l~~~~~~ 1599 (1604)
||+.||+.|+.+..-
T Consensus 72 AA~~aL~~L~~~~~~ 86 (90)
T d1qu6a1 72 AAKLAVEILNKEKKA 86 (90)
T ss_dssp HHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999830778
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.24 E-value=2.6e-12 Score=102.06 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73035899987099999921476413443201136986544520238999999438733898289977744126549999
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588 (1604)
Q Consensus 1509 ~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1588 (1604)
|+|+.||||||+++|++|.|+++++ +||+|. +.|++.|.++ + ..+.|.| +|||.|++.||..
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~---------~g~~h~---~~F~~~v~v~----~-~~~~g~g-~sKK~Aeq~AA~~ 62 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISV---------EGPHHK---KKFIVEAKIK----E-YRTLGEG-KSKKEAEQRAAEE 62 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEE---------ESCGGG---CEEEEEEEET----T-EEEEEEE-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEE---------ECCCCC---CEEEEEEEEC----C-EEEEEEC-CCHHHHHHHHHHH
T ss_conf 9078999999975999998999984---------188878---4799999988----7-7999950-9999999999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000379 1589 MLHELE 1594 (1604)
Q Consensus 1589 ~l~~l~ 1594 (1604)
||+.|+
T Consensus 63 aL~~Lk 68 (68)
T d2nuga2 63 LIKLLE 68 (68)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 999739
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=4.3e-12 Score=100.46 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
.+++|++||||||++++ .|.|+++++ +||+|. +.|+|.|.|+...++ .|.| +|||.||+.||
T Consensus 6 ~~~yk~~L~E~~Qk~~~-~~~y~~~~~---------~Gp~h~---~~F~~~v~v~g~~~~----~g~g-~sKK~Aeq~AA 67 (85)
T d1x49a1 6 PGFYMDKLNKYRQMHGV-AITYKELST---------SGPPHD---RRFTFQVLIDEKEFP----EAKG-RSKQEARNAAA 67 (85)
T ss_dssp TTHHHHHHHHHHHHHTC-CEEEEEEEE---------ESCSSS---CEEEEEEEESSCCCC----CEEE-SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-CCEEEEEEE---------CCCCCC---CEEEEEEECCCEEEE----CCCC-CCHHHHHHHHH
T ss_conf 13399999999986699-975899872---------189887---458998841846750----5566-55999999999
Q ss_pred HHHHHHHHHCCEEECCCC
Q ss_conf 999999987491642479
Q 000379 1587 LIMLHELERQGKIIISSS 1604 (1604)
Q Consensus 1587 ~~~l~~l~~~~~~~~~~~ 1604 (1604)
+.||..|.+++.+-..+|
T Consensus 68 ~~aL~~L~~~~~~~s~~s 85 (85)
T d1x49a1 68 KLAVDILDNENKVDCHTS 85 (85)
T ss_dssp HHHHHHHTTTCCCCSSCC
T ss_pred HHHHHHHHHCCCCCCCCC
T ss_conf 999999987176565579
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.2e-11 Score=94.14 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
.+||+++||||||+++++ |.|++.+ +||+|. +.|+|.|.|+...++. |.| +|||+||+.||
T Consensus 13 ~~n~~s~L~E~~Qk~~~~-~~y~~~~----------~g~~h~---~~F~~~v~i~g~~~~~----g~G-~sKK~Akq~AA 73 (89)
T d1qu6a2 13 MGNYIGLINRIAQKKRLT-VNYEQCA----------SGVHGP---EGFHYKCKMGQKEYSI----GTG-STKQEAKQLAA 73 (89)
T ss_dssp CCCCHHHHHHHHHHSCCE-EEEEEEE----------ECSSSS---SEEEEEEEEETTBCCE----EEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCC-CCEEEEC----------CCCCCC---CCEEEEEEECCCCCCC----CCC-CHHHHHHHHHH
T ss_conf 328999999999962887-6426631----------578788---7569999989703666----565-26999999999
Q ss_pred HHHHHHHHHCCE
Q ss_conf 999999987491
Q 000379 1587 LIMLHELERQGK 1598 (1604)
Q Consensus 1587 ~~~l~~l~~~~~ 1598 (1604)
+.||..|+.+..
T Consensus 74 ~~Al~~L~~~~~ 85 (89)
T d1qu6a2 74 KLAYLQILSEET 85 (89)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHCCCC
T ss_conf 999999970379
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=4.1e-11 Score=93.35 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 03589998709999992147641344320113698654452023899999943873389828997774412654999999
Q 000379 1511 RTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALIML 1590 (1604)
Q Consensus 1511 ~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~~~l 1590 (1604)
+++||||||++++++ .|++++ +||+|. +.|+|.|.|+.. ....|.| +|||+||+.||+.||
T Consensus 2 ~s~L~E~~Qk~~~~~-~~~~~~----------~G~~h~---~~F~~~v~v~~~----~~~~g~G-~sKK~Aeq~AA~~Al 62 (76)
T d1x48a1 2 IGLVNSFAQKKKLSV-NYEQCE----------PNSELP---QRFICKCKIGQT----MYGTGSG-VTKQEAKQLAAKEAY 62 (76)
T ss_dssp HHHHHHHHHHTTCCE-EEEECC----------CSSSSS---CCEEEEEEESSC----EEEEEEE-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC-CCCCCC----------CCCCCC---CCEEEEEEECCE----EECCCCC-CHHHHHHHHHHHHHH
T ss_conf 489999999868997-644477----------698999---758999999999----9578576-279999999999999
Q ss_pred HHHHHCCEEECCCC
Q ss_conf 99987491642479
Q 000379 1591 HELERQGKIIISSS 1604 (1604)
Q Consensus 1591 ~~l~~~~~~~~~~~ 1604 (1604)
+.|..+.....++|
T Consensus 63 ~~L~~~~~~~~~~s 76 (76)
T d1x48a1 63 QKLLKSPPKTAGTS 76 (76)
T ss_dssp HHHHHSCCCCCCCC
T ss_pred HHHHCCCCCCCCCC
T ss_conf 99970488776789
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.2e-10 Score=89.98 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..+||+.||||||+++|++|.|+++.+ + |. +.|++.|.|+ +.....+.+.+|||.|+++||
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~----------~--~~---~~F~~~V~v~----g~~~~s~~g~~SKK~AEq~AA 85 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQR----------T--ID---RMFCSVVTVA----EQKYQSTLWDKSKKLAEQTAA 85 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC----------S--SS---CCEEEEEEET----TEEEEESSCBSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEC----------C--CC---CCCEEEEEEC----CEEEECCCCCCCHHHHHHHHH
T ss_conf 998789999999863999976887622----------5--57---7777999988----847651677453899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q 000379 1587 LIMLHELE 1594 (1604)
Q Consensus 1587 ~~~l~~l~ 1594 (1604)
+.||+.|.
T Consensus 86 ~~AL~~Lg 93 (128)
T d1whna_ 86 IVCLRSQG 93 (128)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99999838
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=8e-11 Score=91.21 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHH
Q ss_conf 34446873035899987099999921476413443201136986544520238999999438733898289977744126
Q 000379 1503 INMKKGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSF 1582 (1604)
Q Consensus 1503 ~~~~~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~ 1582 (1604)
+|....+|++.||||||++++..|.|.++.. +|++| .|+|.|.++ +...+.|.| +|||.|+
T Consensus 4 ~n~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~---------~g~~~-----~F~~~v~i~----g~~~~~g~G-~sKK~Ae 64 (85)
T d1x47a1 4 INPNGKSEVCILHEYMQRVLKVRPVYNFFEC---------ENPSE-----PFGASVTID----GVTYGSGTA-SSKKLAK 64 (85)
T ss_dssp CCTTCCCHHHHHHHHHHHHTCSCCEEEEEEC---------SSSSC-----CEEEEEEET----TEEEEEEEE-SSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC---------CCCCC-----CEEEEEEEC----CEEEECCCC-CHHHHHH
T ss_conf 3889959889999999982999997378754---------78988-----889999999----999744784-1299999
Q ss_pred HHHHHHHHHHHHHCCEE
Q ss_conf 54999999999874916
Q 000379 1583 DSAALIMLHELERQGKI 1599 (1604)
Q Consensus 1583 ~~AA~~~l~~l~~~~~~ 1599 (1604)
+.||+.||+.| ..+++
T Consensus 65 q~AA~~AL~~L-~~~~~ 80 (85)
T d1x47a1 65 NKAARATLEIL-IPDFV 80 (85)
T ss_dssp HHHHHHHHHHH-CSSSS
T ss_pred HHHHHHHHHHH-HHHHH
T ss_conf 99999999999-88777
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.88 E-value=3.1e-09 Score=79.62 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=76.1
Q ss_pred CEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 48999971178999999997419999970599997678888989999999999997189930999804433565778742
Q 000379 415 VLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKVNLLFATDVIEEGMHVPNCS 494 (1604)
Q Consensus 415 ~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~niLIaTsvleeGIDIp~~n 494 (1604)
.+++|||.++..+..++..|+.. +.++..+||.. ...++ ++|++|+.++||||+++|.|||| ++.
T Consensus 37 g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~------~~~e~----~~~~~~~~~~~~~t~~~~~~~~~-~~~ 101 (299)
T d1yksa2 37 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT------FEREY----PTIKQKKPDFILATDIAEMGANL-CVE 101 (299)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS------CC------------CCCSEEEESSSTTCCTTC-CCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHC----CCEEEEECCCC------CHHHH----HHHHCCCCCEEEEECHHHHCEEC-CCE
T ss_conf 98999949999999999999866----98099976867------57677----66515776789970036536412-733
Q ss_pred EEEECCC-------------------CCCHHHHHHHHHHHCCCCCE
Q ss_conf 8999078-------------------99977999976311135865
Q 000379 495 YVIRFDL-------------------PKTVSSYIQSRGRARQHNSQ 521 (1604)
Q Consensus 495 lVI~fD~-------------------p~s~~syiQr~GRArR~gs~ 521 (1604)
.||.++. |-+..+..||+||+||.+.+
T Consensus 102 ~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 102 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred EEEECCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCCCCC
T ss_conf 8986685000035658788268732426899999864666666788
|
| >d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=8.5e-09 Score=76.38 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89706799999983197111455320761--89999999959489999995899999999999999996543
Q 000379 1370 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVC 1439 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1439 (1604)
..++|+.||||||+++..+.|.+...|+. +.|+|.|.++|..+++.|.|.|||+|++.||+.||+.|...
T Consensus 5 ~~~~Ks~LqE~~qk~k~~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~ 76 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 766889999999868999869984024788860899998516543100577528899999999999999985
|
| >d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Dgcr8 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.3e-08 Score=74.98 Aligned_cols=69 Identities=20% Similarity=0.084 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEE--ECCEEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 88970679999998319711145532--07618999999995948999999589999999999999999654
Q 000379 1369 LELPPLRELIELCDSLGYFVKENCTL--KGEMVHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1369 ~~~~p~~~L~e~~~~~~~~~~~~~~~--~g~~~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
..++||+.||||||+.+..+|.|... .|+...|.+.|.++|. ..+.|.|+|||.|++.||+.||+.|..
T Consensus 7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~-~~~~g~G~sKK~Aeq~AA~~AL~~L~~ 77 (85)
T d1x47a1 7 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGV-TYGSGTASSKKLAKNKAARATLEILIP 77 (85)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCE-EEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99598899999999829999973787547898888999999999-974478412999999999999999988
|
| >d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: TAR RNA-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2e-08 Score=73.73 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCE-EE-EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 998889706799999983197111-45-5320761--89999999959489999995899999999999999996
Q 000379 1366 PDKLELPPLRELIELCDSLGYFVK-EN-CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1366 ~~~~~~~p~~~L~e~~~~~~~~~~-~~-~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
+.....|||+.||||||+.++.+| |. ....|+. +.|+|.|.+++ +.+.|.|.|||+|++.||+.||+.|
T Consensus 4 ~~~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~--~~~~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 4 PQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVER--FIEIGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETT--EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECC--EEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 766788978999999997499999799866432677752799999542--2411364529999999999999869
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=5.3e-09 Score=77.90 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..||++.|||||++ +.|+++++ +||+|. +.|+|.|.|+.. . +.|.| +|||.||+.||
T Consensus 3 ~Knpv~~L~E~~~~-----~~y~~~~~---------~G~~h~---~~F~~~v~v~~~---~--~~g~G-~SKK~Ak~~AA 59 (71)
T d2b7va1 3 GKNPVMILNELRPG-----LKYDFLSE---------SGESHA---KSFVMSVVVDGQ---F--FEGSG-RNKKLAKARAA 59 (71)
T ss_dssp SSCHHHHHHHHCCS-----CEEEEEEC---------CCCTTT---CCEEEEEECSSC---E--EEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-----CEEEEEEE---------ECCCCC---CEEEEEEEECCE---E--EEECC-CCHHHHHHHHH
T ss_conf 87989999997659-----86899251---------689989---739999999999---9--98168-98899999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998749
Q 000379 1587 LIMLHELERQG 1597 (1604)
Q Consensus 1587 ~~~l~~l~~~~ 1597 (1604)
..||..|....
T Consensus 60 ~~aL~~L~~~~ 70 (71)
T d2b7va1 60 QSALATVFNLH 70 (71)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHCCC
T ss_conf 99999987468
|
| >d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.9e-08 Score=73.88 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 889706799999983197111455320761--8999999995948999999589999999999999999654
Q 000379 1369 LELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1369 ~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
...|||+.|+||||+++..+.+...+.|+. +.|.|.|.++|. ..+.|.|+|||+||+.||+.||+.|..
T Consensus 12 ~~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~h~~~F~~~v~i~g~-~~~~g~G~sKK~Akq~AA~~Al~~L~~ 82 (89)
T d1qu6a2 12 SMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQK-EYSIGTGSTKQEAKQLAAKLAYLQILS 82 (89)
T ss_dssp CCCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETT-BCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 53289999999999628876426631578788756999998970-366656526999999999999999970
|
| >d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=2.2e-08 Score=73.39 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 06799999983197111455320761--8999999995948999999589999999999999999654
Q 000379 1373 PLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1373 p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
+|+.|+||||+++..+.+...+.|++ +.|+|.|.|+|. ..+.|.|.|||+|++.||+.||+.|..
T Consensus 1 Y~s~L~E~~Qk~~~~~~~~~~~~G~~h~~~F~~~v~v~~~-~~~~g~G~sKK~Aeq~AA~~Al~~L~~ 67 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQT-MYGTGSGVTKQEAKQLAAKEAYQKLLK 67 (76)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSC-EEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCE-EECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9489999999868997644477698999758999999999-957857627999999999999999970
|
| >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=3e-08 Score=72.40 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHCCCCCE-EEEEEECCEEEEEEEEEECCEEEEEEEE-ECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89706799999983197111-4553207618999999995948999999-589999999999999999654
Q 000379 1370 ELPPLRELIELCDSLGYFVK-ENCTLKGEMVHAELRLQLKDVLLVGEGQ-ERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~-~~~~~~g~~~~~~~~V~v~g~~~~~~g~-g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
..+||+.||||||+.++.+| |.+...+....|++.|.++|. .++.+. ++|||+|++.||+.||+.|..
T Consensus 25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~-~~~s~~g~~SKK~AEq~AA~~AL~~Lg~ 94 (128)
T d1whna_ 25 QITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQ-KYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTE-EEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCE-EEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 998789999999863999976887622557777799998884-7651677453899999999999998389
|
| >d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.3e-08 Score=73.29 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 9706799999983197111455-320761--8999999995948999999589999999999999999654
Q 000379 1371 LPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
+|||+.|+||||+++..+.+.. ...|+. +.|+|.|.+++ +.+.|.|+|||+|++.||+.||+.|+.
T Consensus 2 K~Pis~L~E~~qk~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~--~~~~g~g~sKK~Aeq~AA~~al~~L~~ 70 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD--ITCTGEGTSKKLAKHRAAEAAINILKA 70 (73)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT--EEEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEE--EEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 587799999999679898899865358988717999999988--998861465999999999999999874
|
| >d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=3e-08 Score=72.35 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHCCCCCEEE-E-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 70679999998319711145-5-320761--89999999959489999995899999999999999996
Q 000379 1372 PPLRELIELCDSLGYFVKEN-C-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKL 1436 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~~~-~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L 1436 (1604)
|||+.|+||||+.++.+|.+ . ...|+. +.|++.|.++|. ..+.|.|+|||+|++.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGK-TIATGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTE-EEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCE-EEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9178999999974999997999996688888429999998999-9999872899999999999999986
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=5.2e-09 Score=77.98 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 68730358999870999999214764134432011369865445202389999994387338982899777441265499
Q 000379 1507 KGGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAA 1586 (1604)
Q Consensus 1507 ~~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA 1586 (1604)
..|+|+.||+|||+.+.. |.|+++++ .|+.| +.|++.|.+ ..+...+.|.| +|||.|+|.||
T Consensus 5 d~~~K~~L~e~~~~~g~~-P~Y~~~~~---------~~~~~----~~f~v~~~v---~~~~~~~~g~g-~SKK~AEq~AA 66 (81)
T d1t4oa_ 5 DMNAKRQLYSLIGYASLR-LHYVTVKK---------PTAVD----PNSIVECRV---GDGTVLGTGVG-RNIKIAGIRAA 66 (81)
T ss_dssp CTTHHHHHHHHHCCGGGC-CEEEEEEC---------CCSSC----CCEEEEEEC---TTCCEEEEEEE-SSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCC-CEEEEECC---------CCCCC----CCEEEEEEE---ECCCEEEECCC-CHHHHHHHHHH
T ss_conf 568999999998308998-57997014---------78788----988999999---66825876453-30108999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q 000379 1587 LIMLHELER 1595 (1604)
Q Consensus 1587 ~~~l~~l~~ 1595 (1604)
+.||+.+.-
T Consensus 67 ~~aL~~~~~ 75 (81)
T d1t4oa_ 67 ENALRDKKM 75 (81)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHCCH
T ss_conf 999983228
|
| >d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Double-stranded RNA-binding protein A, second dsRBD species: Xenopus laevis [TaxId: 8355]
Probab=98.72 E-value=4.8e-08 Score=70.89 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHCCCCCE-EEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 706799999983197111-455-320761--899999999594899999958999999999999999965
Q 000379 1372 PPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1437 (1604)
.||+.|||+||++++.+| |.+ ...|+. +.|+|.|.+++. ...|.|+|||+|++.||+.||+.|+
T Consensus 1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~--~~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF--VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEEE--EEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9838999999975999983899984378777416899998667--8763767299999999999999845
|
| >d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: staufen homolog 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.71 E-value=5.8e-08 Score=70.27 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHCCCCCE-EEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89706799999983197111-455-320761--8999999995948999999589999999999999999654
Q 000379 1370 ELPPLRELIELCDSLGYFVK-ENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~-~~~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
..||++.|+||||++++.+| |.+ ...|+. +.|+|.|++++. ...|.|.|||+|++.||+.||+.|..
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~--~~~g~g~SKK~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE--VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEEE--ECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 888199999999964999997985024456775069999999656--40232037899999999999999676
|
| >d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: ATP-dependent RNA helicase A, Dhx9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=3.1e-08 Score=72.30 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEEC----CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9706799999983197111455320761--8999999995----948999999589999999999999999654331
Q 000379 1371 LPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLK----DVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441 (1604)
Q Consensus 1371 ~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~----g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1441 (1604)
.|||+.||||||+++..+.|.....|++ +.|+|.|.++ +..+.+.|.|.|||+|++.||+.||+.|...+.
T Consensus 26 ~n~Ks~LqE~~Qk~k~~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g~ 102 (113)
T d1uila_ 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 47999999999867999965985542688995999999942125976776406260999999999999999997488
|
| >d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.4e-08 Score=74.92 Aligned_cols=71 Identities=23% Similarity=0.155 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 98889706799999983197111455-320761--8999999995948999999589999999999999999654
Q 000379 1367 DKLELPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1367 ~~~~~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
+..+.++|+.|+||||++++.+.+.. ...|++ +.|+|.|.++|. .++.|.|.|||+|++.||+.||+.|..
T Consensus 9 ~~~~~~y~s~LqE~~Qk~~~~p~y~~~~~~Gp~h~~~F~v~v~v~~~-~~~~g~G~sKK~Aeq~AA~~aL~~L~~ 82 (90)
T d1qu6a1 9 DLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGR-EFPEGEGRSKKEAKNAAAKLAVEILNK 82 (90)
T ss_dssp CSSSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSS-CCCEEECCSSHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEECCE-EEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99977899999999998299985799871079887447999997756-640567876999999999999999983
|
| >d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-dependent protein kinase pkr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=2.4e-08 Score=73.04 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 889706799999983197111455-320761--89999999959489999995899999999999999996543
Q 000379 1369 LELPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVC 1439 (1604)
Q Consensus 1369 ~~~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1439 (1604)
.+.++|+.|+||||++++.+.+.. ...|++ +.|+|.|+++|. ..+.|.|.|||+|++.||+.||+.|...
T Consensus 5 ~~~~yk~~L~E~~Qk~~~~~~y~~~~~~Gp~h~~~F~~~v~v~g~-~~~~g~g~sKK~Aeq~AA~~aL~~L~~~ 77 (85)
T d1x49a1 5 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEK-EFPEAKGRSKQEARNAAAKLAVDILDNE 77 (85)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSC-CCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCE-EEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 813399999999986699975899872189887458998841846-7505566559999999999999999871
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.5e-08 Score=72.97 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 87303589998709999992147641344320113698654452023899999943873389828997774412654999
Q 000379 1508 GGPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAAL 1587 (1604)
Q Consensus 1508 ~~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~ 1587 (1604)
.||.+.|+|++ +.|.|+++.+ +||+|. +.|++.|.|+ +. .+.|.| +|||.||+.||.
T Consensus 12 ~n~~~~L~e~~-----~~~~Y~~~~~---------~Gp~h~---~~F~~~v~v~----g~-~~~g~G-~SKK~Aeq~AA~ 68 (84)
T d2dmya1 12 MNALMRLNQIR-----PGLQYKLLSQ---------SGPVHA---PVFTMSVDVD----GT-TYEASG-PSKKTAKLHVAV 68 (84)
T ss_dssp THHHHHHHHHS-----CSCCCEEEEE---------ESCSSS---CEEEEEEEET----TE-EEEEEE-SSHHHHHHHHHH
T ss_pred CCHHHHHHHHC-----CCCEEEEEEE---------ECCCCC---CEEEEEEEEC----CE-EEECCC-CCHHHHHHHHHH
T ss_conf 49999998707-----8986999770---------689889---7599999999----99-998589-998999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999874
Q 000379 1588 IMLHELERQ 1596 (1604)
Q Consensus 1588 ~~l~~l~~~ 1596 (1604)
.||+.|+-.
T Consensus 69 ~aL~~L~~~ 77 (84)
T d2dmya1 69 KVLQAMGYP 77 (84)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHCCC
T ss_conf 999994889
|
| >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.65 E-value=6.9e-08 Score=69.76 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHCCCCCE-EE-EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 706799999983197111-45-5320761--899999999594899999958999999999999999965
Q 000379 1372 PPLRELIELCDSLGYFVK-EN-CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLE 1437 (1604)
Q Consensus 1372 ~p~~~L~e~~~~~~~~~~-~~-~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1437 (1604)
|||+.|+||||++++.+| +. ....|+. +.|+|.|.+++. .+.|.|+|||.|++.||+.||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~--~~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY--RTLGEGKSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECCE--EEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 9078999999975999998999984188878479999998877--9999509999999999999999739
|
| >d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: RNase III, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=9.1e-08 Score=68.88 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889706799999983197111455320761--8999999995948999999589999999999999999654331
Q 000379 1367 DKLELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEVCEK 1441 (1604)
Q Consensus 1367 ~~~~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1441 (1604)
+.++.|+|+.|++||++.+..+.|.+...|+. ..|.+.+.+.+....+.|.|.|||.|++.||+.||+.+...+.
T Consensus 2 ~~id~~~K~~L~e~~~~~g~~P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~l~k 78 (81)
T d1t4oa_ 2 DKLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 78 (81)
T ss_dssp CCCCTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 85556899999999830899857997014787889889999996682587645330108999999999983228888
|
| >d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Staufen, domain III species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.53 E-value=2.5e-08 Score=73.03 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEE-EEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8889706799999983197111455-320761--8999999995948999999589999999999999999654
Q 000379 1368 KLELPPLRELIELCDSLGYFVKENC-TLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1368 ~~~~~p~~~L~e~~~~~~~~~~~~~-~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
...++|++.|+||||++++.+.+.+ ...|+. +.|+|.|.+++ ..+.|.|.|||.|++.||+.||+.|+.
T Consensus 4 ~~~k~Pvs~L~E~~q~~~~~~~y~~~~~~G~~h~~~F~~~v~v~~--~~~~g~G~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 4 GDKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS--IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT--EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEEE--EEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 778898999999999679897089997137988708999999821--476605676999999999999999870
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.52 E-value=1.5e-07 Score=67.23 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 73035899987099999921476413443201136986544520238999999438733898289977744126549999
Q 000379 1509 GPRTSLFQLCKTMLWPMPTFETTESKSRTLLVFCEGLEKRTGFSSFVSKITLHIPEFGNVECNGDPRADKKSSFDSAALI 1588 (1604)
Q Consensus 1509 ~~~~~L~e~~~~~~~~~P~y~~~~~~~~~~~~~~~G~~h~~~~~~f~~~v~~~~~~~~~~~~~g~~~~sKK~A~~~AA~~ 1588 (1604)
+|.+.|+|+ .+.|.|+++++ +||+|. +.|++.|+|+.. . +.|.| +|||.||+.||+.
T Consensus 8 ~~l~~L~e~-----~~~~~y~~~~~---------~G~~h~---~~F~~~v~v~~~---~--~~g~G-~SKK~Aeq~AA~~ 64 (73)
T d2b7ta1 8 NALMQLNEI-----KPGLQYMLLSQ---------TGPVHA---PLFVMSVEVNGQ---V--FEGSG-PTKKKAKLHAAEK 64 (73)
T ss_dssp HHHHHHHHH-----CSCCEEEEEEE---------ECSSSS---CEEEEEEESSSS---E--EEEEE-SSHHHHHHHHHHH
T ss_pred CHHHHHHHC-----CCCCEEEEEEE---------ECCCCC---CEEEEEEEECCE---E--EECCC-CCHHHHHHHHHHH
T ss_conf 999999851-----89987999871---------289999---649999999999---9--99188-7499999999999
Q ss_pred HHHHHHHC
Q ss_conf 99999874
Q 000379 1589 MLHELERQ 1596 (1604)
Q Consensus 1589 ~l~~l~~~ 1596 (1604)
||+.|...
T Consensus 65 aL~~l~~~ 72 (73)
T d2b7ta1 65 ALRSFVQF 72 (73)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHC
T ss_conf 99998538
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.46 E-value=4.3e-06 Score=56.64 Aligned_cols=153 Identities=24% Similarity=0.239 Sum_probs=95.5
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHH---HHHHHHHHHCCC
Q ss_conf 99990889999999613699999089973999999999999999860799709999926844499---999999852697
Q 000379 43 NFIPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVH---QQYDVIRVHTDF 119 (1604)
Q Consensus 43 ~~~pR~yQ~e~l~~al~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~---Qq~~~i~~~~~~ 119 (1604)
.+.|++-|.-.--. +.+.-|+.+.||-|||+++.+++.-..- .+++ |-+++..--|+. +|..-+..++|+
T Consensus 78 G~RhyDVQLiGgi~-L~~G~iaem~TGEGKTL~a~l~a~l~al-----~g~~-vhvvTvNdyLA~RDae~m~~iy~~lGl 150 (273)
T d1tf5a3 78 GMFPFKVQLMGGVA-LHDGNIAEMKTGEGKTLTSTLPVYLNAL-----TGKG-VHVVTVNEYLASRDAEQMGKIFEFLGL 150 (273)
T ss_dssp SCCCCHHHHHHHHH-HHTTSEEECCTTSCHHHHHHHHHHHHHT-----TSSC-EEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEHHHHHHHHH-HHHHHHEEECCCCCCHHHHHHHHHHHHH-----CCCC-CEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 64773047899999-8765530206887510399999999996-----6998-569715730033124577679998298
Q ss_pred CEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHH-HHHHHHCC------CCCCCEEEEEEECCCCCCCC---CH----
Q ss_conf 189998788877302267887217993999849999-99997227------67664439999375100389---94----
Q 000379 120 EVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQIL-LDALRKAF------LSLDIVCFIVIDECHHATGN---HP---- 185 (1604)
Q Consensus 120 ~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L-~~~l~~~~------i~l~~i~liI~DEaH~~~~~---~~---- 185 (1604)
.|+.+..++..+. . +..=.+||+.+|..-| .+.|+... .....+.+.|+||++.+.-+ .|
T Consensus 151 svg~~~~~~~~~~-----r-~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliis 224 (273)
T d1tf5a3 151 TVGLNLNSMSKDE-----K-REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 224 (273)
T ss_dssp CEEECCTTSCHHH-----H-HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred CCCCCCCCCCHHH-----H-HHHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCCCCCEEEEECCHHHHHHCCCCCEEEC
T ss_conf 7345655457777-----7-777607835502555544441143325866645688878999753466253468855853
Q ss_pred -----HHHH-HHHHHHHCCCCCCEEEEECCCC
Q ss_conf -----9999-9999830699981999932478
Q 000379 186 -----YTKI-MKEFYHKSDNKPKVFGMTASPV 211 (1604)
Q Consensus 186 -----~~~i-m~~~~~~~~~~prIlgLTATP~ 211 (1604)
...| .+.|++ .-+++-|||+|-.
T Consensus 225 g~~~~~a~it~q~~f~---~y~~l~gmtgta~ 253 (273)
T d1tf5a3 225 GQSMTLATITFQNYFR---MYEKLAGMTGTAK 253 (273)
T ss_dssp EEEEEEEEEEHHHHHT---TSSEEEEEESCCG
T ss_pred CCCCCHHHHHHHHHHH---HHHHHHCCCCCCH
T ss_conf 6864154644999999---9999857746307
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=7.1e-06 Score=55.01 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98899999999960999994899997117899999999741999997059999767888898999999999999718993
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGKV 475 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~~ 475 (1604)
..|...+++-+.... ..+..+||++.+...++.++.+|+.. ++....++.. ... ++..+-...-..-
T Consensus 17 ~eK~~AIi~eV~~~~-~~grPVLIgT~SIe~SE~ls~~L~~~----gi~h~vLnAk-------~~~-~Ea~II~~Ag~~g 83 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNK----GIPHQVLNAK-------NHE-REAQIIEEAGQKG 83 (175)
T ss_dssp HHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSS-------CHH-HHHHHHTTTTSTT
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHC----CCCCEEEHHH-------HHH-HHHHHHHHCCCCC
T ss_conf 999999999999999-65998899968199999999999975----9971221022-------689-9888887513798
Q ss_pred EEEEECCCCCCCCCCCCC--------CEEEECCCCCCHHHHHHHHHHHCCCCCE--EEEEEECC
Q ss_conf 099980443356577874--------2899907899977999976311135865--99998146
Q 000379 476 NLLFATDVIEEGMHVPNC--------SYVIRFDLPKTVSSYIQSRGRARQHNSQ--FILMLERG 529 (1604)
Q Consensus 476 niLIaTsvleeGIDIp~~--------nlVI~fD~p~s~~syiQr~GRArR~gs~--~i~lv~~~ 529 (1604)
.|.|||+++++|.||.-- -+||.-..+.+.+-..|.+||++|.|.. +.+++.-+
T Consensus 84 ~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sle 147 (175)
T d1tf5a4 84 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSME 147 (175)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred CEEEHHHHHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCCCEEEEECC
T ss_conf 1664455887088756638898579858998404852667888842344207874518999908
|
| >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=4.8e-07 Score=63.59 Aligned_cols=64 Identities=27% Similarity=0.265 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89706799999983197111455320761--8999999995948999999589999999999999999654
Q 000379 1370 ELPPLRELIELCDSLGYFVKENCTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.+||++.|+|+|++..|. .....|+. +.|+|.|.++|..+ .|.|.|||+||++||+.||+.|.+
T Consensus 3 ~Knpv~~L~E~~~~~~y~---~~~~~G~~h~~~F~~~v~v~~~~~--~g~G~SKK~Ak~~AA~~aL~~L~~ 68 (71)
T d2b7va1 3 GKNPVMILNELRPGLKYD---FLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHCCSCEEE---EEECCCCTTTCCEEEEEECSSCEE--EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCEEE---EEEEECCCCCCEEEEEEEECCEEE--EECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 879899999976598689---925168998973999999999999--816898899999999999999874
|
| >d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: Spermatid perinuclear RNA-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.2e-05 Score=53.30 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHCCCCCEEE-EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8970679999998319711145-5320761--8999999995948999999589999999999999999654
Q 000379 1370 ELPPLRELIELCDSLGYFVKEN-CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~-~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
.+||+..|+|+.+. +.|. ....|++ +.|+|.|.++|.. ..|.|.|||+||+.||+.||+.|..
T Consensus 11 ~~n~~~~L~e~~~~----~~Y~~~~~~Gp~h~~~F~~~v~v~g~~--~~g~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T d2dmya1 11 LMNALMRLNQIRPG----LQYKLLSQSGPVHAPVFTMSVDVDGTT--YEASGPSKKTAKLHVAVKVLQAMGY 76 (84)
T ss_dssp CTHHHHHHHHHSCS----CCCEEEEEESCSSSCEEEEEEEETTEE--EEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCCC----CEEEEEEEECCCCCCEEEEEEEECCEE--EECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 44999999870789----869997706898897599999999999--9858999899999999999999488
|
| >d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: dsRNA-binding domain-like family: Double-stranded RNA-binding domain (dsRBD) domain: dsRNA-specific editase 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=2.4e-05 Score=51.14 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHCCCCCEEE-EEEECCE--EEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 8970679999998319711145-5320761--8999999995948999999589999999999999999654
Q 000379 1370 ELPPLRELIELCDSLGYFVKEN-CTLKGEM--VHAELRLQLKDVLLVGEGQERSRKAAKGKAASQLLKKLEV 1438 (1604)
Q Consensus 1370 ~~~p~~~L~e~~~~~~~~~~~~-~~~~g~~--~~~~~~V~v~g~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1438 (1604)
+++|+..|+|+ + ..+.+. ....|++ +.|+|.|.++|.. . .|.|+|||+||++||+.||+.|.+
T Consensus 6 pK~~l~~L~e~---~-~~~~y~~~~~~G~~h~~~F~~~v~v~~~~-~-~g~G~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 6 PKNALMQLNEI---K-PGLQYMLLSQTGPVHAPLFVMSVEVNGQV-F-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SHHHHHHHHHH---C-SCCEEEEEEEECSSSSCEEEEEEESSSSE-E-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHC---C-CCCEEEEEEEECCCCCCEEEEEEEECCEE-E-ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 81999999851---8-99879998712899996499999999999-9-918874999999999999999853
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.86 E-value=6.1e-07 Score=62.83 Aligned_cols=93 Identities=9% Similarity=-0.044 Sum_probs=64.6
Q ss_pred CCCCCCCEEEECCCCCEEEEE---EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 123358399832599248999---86189988999999999998139999854405311279975098304577533565
Q 000379 904 AKNLKDMVVLAIHTGRIYSIV---EIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980 (1604)
Q Consensus 904 ~~~l~~~vv~~~~~~~~Y~v~---~i~~d~tp~spf~~~~~~~~~ty~~Yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~ 980 (1604)
...+.+.+|.+.|+++.|.+. ++.++.||.+.|... ...+|.+||+++|++ +.+||||..+.-.+.+
T Consensus 184 ~k~lvG~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~---~~~s~ieYYk~~Yni---D~~QPlLvs~~k~~~~---- 253 (322)
T d1u04a1 184 PLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWN---TPEAKLEFYRKFGQV---DLKQPAILAKFASKIK---- 253 (322)
T ss_dssp TTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHCSC---CTTSCEEEEEESCC------
T ss_pred HHHEECEEEEECCCCCCEECCHHHCCCCCCCCCCEECCC---CCCCHHHHHHHHCCC---CCCCCEEEEECCCCCC----
T ss_conf 463016499750578661044120277565866222258---966399999984599---9778559875134567----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCHHHHHH
Q ss_conf 56799999888888878888872354275340660241889999
Q 000379 981 NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVDVPISVVKS 1024 (1604)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~~p~~~~~~ 1024 (1604)
+ ..+..++|+||||....++-.+-..
T Consensus 254 -----~-------------~~~~~i~LiPELc~lTGltD~mR~d 279 (322)
T d1u04a1 254 -----K-------------NKNYKIYLLPQLVVPTYNAEQLESD 279 (322)
T ss_dssp ---------------------CCCEEECTTTEEEEEEGGGC---
T ss_pred -----C-------------CCCEEEEECHHHHHHCCCCHHHHHH
T ss_conf -----9-------------9840799716765551883788999
|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Eukaryotic translation initiation factor 2C 1, EIF2C1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=3.9e-05 Score=49.63 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=61.6
Q ss_pred CCCCCEEEECCC---CCEEEEEEECCCCCCCCCCCCCC---CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 335839983259---92489998618998899999999---999813999985440531127997509830457753356
Q 000379 906 NLKDMVVLAIHT---GRIYSIVEIVNNSSAESPFDGNT---DDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLL 979 (1604)
Q Consensus 906 ~l~~~vv~~~~~---~~~Y~v~~i~~d~tp~spf~~~~---~~~~~ty~~Yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l 979 (1604)
.+++.-|...|. .+.|.|.++.++.++.+.|+... .+...|+++||+++|++.|.+|++|+|.+..-.
T Consensus 36 ~Lkgl~V~~~h~~~~~r~y~I~gl~~~~~~~~~F~~~~~~g~~~~iTV~~YFk~~Y~~~L~~p~lP~l~vg~~~------ 109 (126)
T d1si2a_ 36 EIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQ------ 109 (126)
T ss_dssp HHTTCEEEECTTTTCCCEEEEEEEEEEETTTCEEECC------CEEEHHHHHHHTSCCCCSCTTSEEEEESCGG------
T ss_pred HHCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEECCCC------
T ss_conf 83882999955898853699730237888775342015778852788999999871963479998889857899------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEC
Q ss_conf 5567999998888888788888723542753406602
Q 000379 980 VNFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016 (1604)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~ 1016 (1604)
+ ..+||+|+|.+.+
T Consensus 110 --------------------k---~~~lP~Elc~I~~ 123 (126)
T d1si2a_ 110 --------------------K---HTYLPLEVCNIVA 123 (126)
T ss_dssp --------------------G---CEEEEGGGEEECC
T ss_pred --------------------C---CEEECCEEEEECC
T ss_conf --------------------9---8697668459568
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.0024 Score=36.51 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 99088999999961369-999908997399999999999999986079970999992684449999999985
Q 000379 45 IPRIYQLKVFEVAKRRN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRV 115 (1604)
Q Consensus 45 ~pR~yQ~e~l~~al~~n-~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~ 115 (1604)
...+.|.+++..++.++ ++|..|.|+|||.+..-++..+.+. ...++.++++.+||-.-+.+..+.+..
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~--~~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM--ADGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHT--CSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCCEEHHHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 5663899999999708859997689887521699999999998--752698289843759999999988877
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.19 E-value=0.0055 Score=33.91 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC-
Q ss_conf 9889999999996099999489999711789999999974199999705999976788889899999999999971899-
Q 000379 396 STKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK- 474 (1604)
Q Consensus 396 s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~- 474 (1604)
..|...+++-+.... ..+..+||.+.++...+.|..+|.. .++....+... .. +|+..|-. ..|.
T Consensus 17 ~~K~~Avv~ei~~~h-~~GqPVLVGT~SVe~SE~lS~lL~~----~gi~h~vLNAK-------~h-erEAeIIA-qAG~~ 82 (219)
T d1nkta4 17 EAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTK----RRIPHNVLNAK-------YH-EQEATIIA-VAGRR 82 (219)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHH----TTCCCEEECSS-------CH-HHHHHHHH-TTTST
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHH----HCCCHHCCCHH-------HH-HHHHHHHH-HCCCC
T ss_conf 999999999999999-6699889961759999999999987----25343224104-------68-88889999-64668
Q ss_pred CEEEEECCCCCCCCCCCC----------------------------------------------------CCEEEECCCC
Q ss_conf 309998044335657787----------------------------------------------------4289990789
Q 000379 475 VNLLFATDVIEEGMHVPN----------------------------------------------------CSYVIRFDLP 502 (1604)
Q Consensus 475 ~niLIaTsvleeGIDIp~----------------------------------------------------~nlVI~fD~p 502 (1604)
-.|-|||+++++|-||.= ==+||--...
T Consensus 83 GaVTIATNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErH 162 (219)
T d1nkta4 83 GGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERH 162 (219)
T ss_dssp TCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCC
T ss_pred CCEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 83796200047877646468601556777654146731287899999987778889988877777774499679842556
Q ss_pred CCHHHHHHHHHHHCCCCC--EEEEEEECCC
Q ss_conf 997799997631113586--5999981467
Q 000379 503 KTVSSYIQSRGRARQHNS--QFILMLERGN 530 (1604)
Q Consensus 503 ~s~~syiQr~GRArR~gs--~~i~lv~~~~ 530 (1604)
.|.+---|-+||++|+|. ...+|+.-++
T Consensus 163 eSrRIDnQLRGRsGRQGDPGsSrFflSLeD 192 (219)
T d1nkta4 163 ESRRIDNQLRGRSGRQGDPGESRFYLSLGD 192 (219)
T ss_dssp SSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCH
T ss_conf 655555330266645689751256774467
|
| >d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RNase III domain-like superfamily: RNase III domain-like family: RNase III catalytic domain-like domain: Hypothetical protein BC0111 species: Bacillus cereus [TaxId: 1396]
Probab=97.17 E-value=0.00016 Score=45.24 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHC
Q ss_conf 72245789998762165079886899999886213
Q 000379 1327 PKALGDLLESIVGAVLIDTKLNLDEVWRIFKPILS 1361 (1604)
Q Consensus 1327 ~k~l~D~~EaliGAi~lDsg~~~~~~~~~~~~~l~ 1361 (1604)
++.++|+|||++||+|+|+|+ +.++.++...++
T Consensus 91 ~y~lad~fEAliGalYLd~~~--e~~~~~i~~~~~ 123 (127)
T d1u61a_ 91 TYRHSTAFEALIGYHHLLNNR--ERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_conf 777605999999999991888--999999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.88 E-value=0.0021 Score=36.95 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 9908899999996136999990899739999999999999998607997099999268444999999998526
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHT 117 (1604)
Q Consensus 45 ~pR~yQ~e~l~~al~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~ 117 (1604)
++.+=|.++++. ...+++|.++.|||||.+.+..+.+++.... .+..+++++++|+.++......+....
T Consensus 1 ~L~~eQ~~av~~-~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~--~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--YQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHCC--CCHHHEEEEECCHHHHHHHHHHHHHHC
T ss_conf 969899999819-9999899962884389999999999999569--995578999686999999999999853
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.013 Score=31.11 Aligned_cols=138 Identities=10% Similarity=0.035 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHC-------CC-EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 990889999999613-------69-9999089973999999999999999860799709999926844499999999852
Q 000379 45 IPRIYQLKVFEVAKR-------RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 45 ~pR~yQ~e~l~~al~-------~n-~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~ 116 (1604)
..+|||.++++...+ .+ .|++.|.|+|||..|..++..+.. ........ +-. + .....+...
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~---~~~~~~~~---~~~---~-~~~~~i~~~ 71 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC---QQPQGHKS---CGH---C-RGCQLMQAG 71 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC---SSCBTTBC---CSC---S-HHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC---CCCCCCCC---CCC---C-CHHHHHHHC
T ss_conf 9871219999999999985996737988899987599999999982101---01232122---334---2-015565430
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 69718999878887730226788721799399984999999997227676644399993751003899499999999830
Q 000379 117 TDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK 196 (1604)
Q Consensus 117 ~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~ 196 (1604)
....+..+...........+.. ..+...+. ..-......++|+||+|.+... ..+.+++ +...
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~i--------------r~l~~~~~-~~~~~~~~kviIide~d~l~~~-a~n~Llk-~lEe 134 (207)
T d1a5ta2 72 THPDYYTLAPEKGKNTLGVDAV--------------REVTEKLN-EHARLGGAKVVWVTDAALLTDA-AANALLK-TLEE 134 (207)
T ss_dssp CCTTEEEECCCTTCSSBCHHHH--------------HHHHHHTT-SCCTTSSCEEEEESCGGGBCHH-HHHHHHH-HHTS
T ss_pred CCCCCCHHHHHHCCCCCCCCHH--------------HHHHHHHH-HCCCCCCCCEEEECHHHHHHHH-HHHHHHH-HHHH
T ss_conf 3431101234313453332114--------------67765321-1003576404773134420000-1499999-9985
Q ss_pred CCCCCCEEEEECC
Q ss_conf 6999819999324
Q 000379 197 SDNKPKVFGMTAS 209 (1604)
Q Consensus 197 ~~~~prIlgLTAT 209 (1604)
.+....+++.|-.
T Consensus 135 p~~~~~fIl~t~~ 147 (207)
T d1a5ta2 135 PPAETWFFLATRE 147 (207)
T ss_dssp CCTTEEEEEEESC
T ss_pred HCCCCEEEEEECC
T ss_conf 0111104553068
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.53 E-value=0.0088 Score=32.44 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 990889999999613699999089973999999999999999860799709999926844499999999852
Q 000379 45 IPRIYQLKVFEVAKRRNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVH 116 (1604)
Q Consensus 45 ~pR~yQ~e~l~~al~~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~ 116 (1604)
.+.+=|.++++. ....++|.++.|||||.+++-.+.+++.. ...+..+++++++++..+......+...
T Consensus 11 ~L~~eQ~~~v~~-~~g~~lV~g~aGSGKTt~l~~ri~~ll~~--~~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 11 HLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAE--KHVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHT--TCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCCHHHEEEEECCHHHHHHHHHHHHHH
T ss_conf 678999999829-99998999529866899999999999980--8998789375766498999899999862
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.50 E-value=0.018 Score=30.13 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCCCCCCCHHHHHHHHHHHC------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 88799990889999999613------699999089973999999999999999860799709999926844499999999
Q 000379 40 NSINFIPRIYQLKVFEVAKR------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 40 ~~~~~~pR~yQ~e~l~~al~------~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i 113 (1604)
....|.|.--|-++++.+.. ++..+..-||+|||++..-++... ++ .+|+++|+..++.|+++.+
T Consensus 6 ~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~--------~r-p~LVVt~n~~~A~qL~~dL 76 (413)
T d1t5la1 6 LVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV--------NK-PTLVIAHNKTLAGQLYSEL 76 (413)
T ss_dssp CCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH--------TC-CEEEECSSHHHHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CC-CEEEEECCHHHHHHHHHHH
T ss_conf 70588999988899999999986599858996778748999999999973--------99-9899948999999999999
Q ss_pred HHHCCCCEEEEE
Q ss_conf 852697189998
Q 000379 114 RVHTDFEVEEYY 125 (1604)
Q Consensus 114 ~~~~~~~v~~~~ 125 (1604)
+.+++-....+.
T Consensus 77 ~~~l~~~~v~~f 88 (413)
T d1t5la1 77 KEFFPHNAVEYF 88 (413)
T ss_dssp HHHCTTSEEEEE
T ss_pred HHHCCCCCEEEC
T ss_conf 987487745432
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.06 Score=26.35 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHC-----CCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9990889999999613-----6999990899739999999999999
Q 000379 44 FIPRIYQLKVFEVAKR-----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 44 ~~pR~yQ~e~l~~al~-----~n~Iv~~~TGsGKTliailli~~~l 84 (1604)
+.-+....+.+..+.. .+++++.|.|+|||.++-.++.++.
T Consensus 13 iig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 13 LSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp CCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 3583999999999997699878599889999988999999997622
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.04 Score=27.60 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=65.2
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEE
Q ss_conf 97099999268444999999998526-97189998788877302267887217993999849999999972276766443
Q 000379 92 FKKLIIFLAPTVHLVHQQYDVIRVHT-DFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVC 170 (1604)
Q Consensus 92 ~~~~vliLvPtv~Lv~Qq~~~i~~~~-~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~ 170 (1604)
.+..+.|+||.+.-.+..++.+++.+ ++++..+||.++.+.......+-.-.+.+|+|+|.= + .--+++.+.+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Ttv-----I-EvGiDvpnA~ 103 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI-----I-ETGIDIPTAN 103 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST-----T-GGGSCCTTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEHH-----H-HHCCCCCCCC
T ss_conf 699599997175212668888887477337999972268888999999998298626887553-----4-4046899876
Q ss_pred EEEEECCCCCC
Q ss_conf 99993751003
Q 000379 171 FIVIDECHHAT 181 (1604)
Q Consensus 171 liI~DEaH~~~ 181 (1604)
++|+..|++..
T Consensus 104 ~iiI~~a~rfG 114 (211)
T d2eyqa5 104 TIIIERADHFG 114 (211)
T ss_dssp EEEETTTTSSC
T ss_pred EEEEECCHHCC
T ss_conf 99871300033
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.66 E-value=0.083 Score=25.28 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCCEE-EEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
Q ss_conf 36999-99089973999999999999999860799709999926-84449999999985269718999878887730226
Q 000379 59 RRNTI-AVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAP-TVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQ 136 (1604)
Q Consensus 59 ~~n~I-v~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvP-tv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~ 136 (1604)
++++| ++.|||+|||....-++.++.. . +++..++-+. .+.-+.+|-+.+.+.+++.+...........
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~----~-g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~---- 79 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKG----K-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPES---- 79 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH----T-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH----C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH----
T ss_conf 9868999899999889999999999997----7-992799954434640888899999862886311124420367----
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 7887217993999849999999972276766443999937510038994999999998306999819999324
Q 000379 137 CWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMTAS 209 (1604)
Q Consensus 137 ~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~~~~prIlgLTAT 209 (1604)
+..... ........+++++|=+-+...+.....-+..+.....+...+|-+.|+
T Consensus 80 -----------------~~~~~~--~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~ 133 (207)
T d1ls1a2 80 -----------------IRRRVE--EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 133 (207)
T ss_dssp -----------------HHHHHH--HHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred -----------------HHHHHH--HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf -----------------888898--887633676403345442000036688999998631873699984345
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.21 E-value=0.1 Score=24.60 Aligned_cols=101 Identities=9% Similarity=0.097 Sum_probs=56.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 99990899739999999999999998607997099999268444999999998526971899987888773022678872
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKE 141 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~ 141 (1604)
++++.|+|+|||+.+..+..+... .+..++++ +...+..+....+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~------------------------- 86 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKK------RGYRVIYS-SADDFAQAMVEHLKKG------------------------- 86 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHH------TTCCEEEE-EHHHHHHHHHHHHHHT-------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC------CCCCEEEE-CHHHHHHHHHHHHHCC-------------------------
T ss_conf 799888998399999999987446------76504884-4378799999998716-------------------------
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCC
Q ss_conf 1799399984999999997227676644399993751003899499999999830-69998199993247
Q 000379 142 INKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHK-SDNKPKVFGMTASP 210 (1604)
Q Consensus 142 ~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~-~~~~prIlgLTATP 210 (1604)
..+-+.+. +...++|++|+.|...++..+...+-.++.. .....+++..|..|
T Consensus 87 ---------~~~~~~~~-------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 87 ---------TINEFRNM-------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp ---------CHHHHHHH-------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ---------CHHHHHHH-------HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf ---------62667898-------7621301011265505865778899999998763166389954875
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.63 E-value=0.13 Score=23.86 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=63.1
Q ss_pred HHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHH--HHHHHHHHHHHHCCCCEEE
Q ss_conf 9999999613----699999089973999999999999999860799709999926844--4999999998526971899
Q 000379 50 QLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVH--LVHQQYDVIRVHTDFEVEE 123 (1604)
Q Consensus 50 Q~e~l~~al~----~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~--Lv~Qq~~~i~~~~~~~v~~ 123 (1604)
|.+.+..+.+ .+.|++.|.|+|||-+|..++.+... ......-++++.|... -++|..+ +..++
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~---~~~~h~D~~~i~~~~~~I~Id~IR~-i~~~~------ 71 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK---FPPKASDVLEIDPEGENIGIDDIRT-IKDFL------ 71 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT---SCCCTTTEEEECCSSSCBCHHHHHH-HHHHH------
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCCHHHHHH-HHHHH------
T ss_conf 7899999996699855998898998889999999999843---4567998899807767899899999-99999------
Q ss_pred EECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 98788877302267887217993999849999999972276766443999937510038994999999998306999819
Q 000379 124 YYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKV 203 (1604)
Q Consensus 124 ~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~~~~prI 203 (1604)
... -..+...++|+||||.+... ..+.+.+. ....+....+
T Consensus 72 ------------------------------------~~~-~~~~~~KviIId~ad~l~~~-aqNaLLK~-LEEPp~~t~f 112 (198)
T d2gnoa2 72 ------------------------------------NYS-PELYTRKYVIVHDCERMTQQ-AANAFLKA-LEEPPEYAVI 112 (198)
T ss_dssp ------------------------------------TSC-CSSSSSEEEEETTGGGBCHH-HHHHTHHH-HHSCCTTEEE
T ss_pred ------------------------------------HHC-CCCCCCEEEEEECCCCCCHH-HHHHHHHH-HHCCCCCCEE
T ss_conf ------------------------------------617-54589879999473103666-66478887-7378988522
Q ss_pred EEEECCC
Q ss_conf 9993247
Q 000379 204 FGMTASP 210 (1604)
Q Consensus 204 lgLTATP 210 (1604)
+..|..+
T Consensus 113 iLit~~~ 119 (198)
T d2gnoa2 113 VLNTRRW 119 (198)
T ss_dssp EEEESCG
T ss_pred EECCCCH
T ss_conf 2206995
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.15 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 89999999613----69999908997399999999999999
Q 000379 49 YQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 49 yQ~e~l~~al~----~n~Iv~~~TGsGKTliailli~~~l~ 85 (1604)
-..+.+..+++ .+.|+..|.|+|||.+|-.++.++..
T Consensus 22 ~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~ 62 (224)
T d1sxjb2 22 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 62 (224)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 99999999998699874999889998705469999999725
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.93 E-value=0.16 Score=23.12 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=63.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 99990899739999999999999998607997099999268-44499999999852697189998788877302267887
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPt-v~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1604)
++++.|||+|||....-++.++.. .+++..++-+.+ +.=+.+|-+.+-+.+++.+..... ..+.
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~~-----~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~--~~d~-------- 73 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQN-----LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDP-------- 73 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT-----TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCT--TCCH--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCHHHHHHCCCCCCCEEEECCC--CCCH--------
T ss_conf 999899999889999999999997-----7990799981366654026676405456823896167--7427--------
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC------CCCCCEEEEECCCC
Q ss_conf 217993999849999999972276766443999937510038994999999998306------99981999932478
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHATGNHPYTKIMKEFYHKS------DNKPKVFGMTASPV 211 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~------~~~prIlgLTATP~ 211 (1604)
.+.+.+... .....+.++|++|=+=+...+...-..++.+.... .+.-.+|-|+|+-.
T Consensus 74 -----------~~~~~~~~~--~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 137 (207)
T d1okkd2 74 -----------AALAYDAVQ--AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG 137 (207)
T ss_dssp -----------HHHHHHHHH--HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC
T ss_pred -----------HHHHHHHHH--HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf -----------889999899--9998799999717522231127788887777777653256787359999620047
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.40 E-value=0.19 Score=22.63 Aligned_cols=56 Identities=21% Similarity=0.120 Sum_probs=37.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHHCCCCEE
Q ss_conf 99990899739999999999999998607997099999268-44499999999852697189
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVE 122 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPt-v~Lv~Qq~~~i~~~~~~~v~ 122 (1604)
++++.|||+|||....-++.++.. .+++..++-+.+ +.=+.+|-+.+.+.+++.+.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~~-----~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~ 70 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFVD-----EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 70 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999899999889999999999997-----799069996013342046788877643276410
|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SH3-like barrel superfamily: PAZ domain family: PAZ domain domain: Argonaute 2 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.94 E-value=0.11 Score=24.54 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=50.9
Q ss_pred CCCCEEEECC------CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 3583998325------9924899986189988999999999998139999854405311279975098304577533565
Q 000379 907 LKDMVVLAIH------TGRIYSIVEIVNNSSAESPFDGNTDDDSKTFVNYFSEKYGIVLIHPGQPLLRLKQSHNPHNLLV 980 (1604)
Q Consensus 907 l~~~vv~~~~------~~~~Y~v~~i~~d~tp~spf~~~~~~~~~ty~~Yy~~k~~~~i~~~~QPlL~~~~~~~~~n~l~ 980 (1604)
+++.-|...| .+|.|.|.++-..-+-...|+. ++...|-.+||++ |++.+..|+-|.|.+..-.
T Consensus 37 LKGlkV~~th~~~~~~~~R~~~I~glt~~~a~~~~F~~--dg~~itV~~YF~~-~~~~Lk~p~lPcl~vG~~~------- 106 (123)
T d1t2sa_ 37 LRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH--DGKKVTIASYFHS-RNYPLKFPQLHCLNVGSSI------- 106 (123)
T ss_dssp HTTEEEEECCCTTTCCCCEEEEECEEEEEETTTCEEEE--TTEEEEHHHHHHH-TTCCCSCTTSEEEEEECSS-------
T ss_pred HCCCEEEEECCCCCCCCCCEEEECCCCCCCHHCCEECC--CCEEEEHHHHHHH-HCCCCCCCCCCEEEECCCC-------
T ss_conf 38978999548887887736998137888632255537--9918889999998-5954348997679967888-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEC
Q ss_conf 567999998888888788888723542753406602
Q 000379 981 NFNDGGGSGKGSKSGMNTKKPQMHVHMPPELLVRVD 1016 (1604)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~~ 1016 (1604)
-..++|.|+|.+.+
T Consensus 107 ----------------------k~~ylPmElc~I~~ 120 (123)
T d1t2sa_ 107 ----------------------KSILLPIELCSIEE 120 (123)
T ss_dssp ----------------------SEEEECGGGEEECT
T ss_pred ----------------------CCCEECHHHEEECC
T ss_conf ----------------------87285550278668
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.89 E-value=0.22 Score=22.22 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHC----------CCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
Q ss_conf 799990889999999613----------6999990899739999999999999998607997099999268444999999
Q 000379 42 INFIPRIYQLKVFEVAKR----------RNTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYD 111 (1604)
Q Consensus 42 ~~~~pR~yQ~e~l~~al~----------~n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~ 111 (1604)
..+.=|+.|.+.+..+++ .++++..|+|+|||.++-.++..+. .......+.+-+.......+...
T Consensus 16 ~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~ 91 (276)
T d1fnna2 16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK----DKTTARFVYINGFIYRNFTAIIG 91 (276)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT----TSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH----CCCCCCEEEECCHHHHHHHHHHH
T ss_conf 87887799999999999999857898888168889899989999999999975----44688578732300112466654
Q ss_pred HHHHH
Q ss_conf 99852
Q 000379 112 VIRVH 116 (1604)
Q Consensus 112 ~i~~~ 116 (1604)
.+...
T Consensus 92 ~~~~~ 96 (276)
T d1fnna2 92 EIARS 96 (276)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 56776
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.70 E-value=0.23 Score=22.08 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99889999999996099999489999711789999999974199999705999976788889899999999999971899
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~ 474 (1604)
-+.|-..........- ..+.++++-+.+..-|...++.++.....-++.+..++|. ++.++|.++..+.++|+
T Consensus 114 GSGKT~Va~~a~~~~~-~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~------~~~~~r~~~~~~~~~g~ 186 (264)
T d1gm5a3 114 GSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGA------TTPSEKEKIKSGLRNGQ 186 (264)
T ss_dssp SSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSS------SCHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHHHH-HCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEECCC------CCHHHHHHHHHHHHCCC
T ss_conf 5566599999999988-5135505874047665789999988620123121110110------13699999999997799
Q ss_pred CEEEEECCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEE
Q ss_conf 3099980443-35657787428999078999779999763111358-6599998
Q 000379 475 VNLLFATDVI-EEGMHVPNCSYVIRFDLPKTVSSYIQSRGRARQHN-SQFILML 526 (1604)
Q Consensus 475 ~niLIaTsvl-eeGIDIp~~nlVI~fD~p~s~~syiQr~GRArR~g-s~~i~lv 526 (1604)
.+++|.|..+ .+.+.+.+..+||.=.- .--++.||.+-..... ...++|.
T Consensus 187 ~~iiIGThsl~~~~~~f~~LglviiDEq--H~fgv~Qr~~l~~~~~~~~~l~~S 238 (264)
T d1gm5a3 187 IDVVIGTHALIQEDVHFKNLGLVIIDEQ--HRFGVKQREALMNKGKMVDTLVMS 238 (264)
T ss_dssp CCEEEECTTHHHHCCCCSCCCEEEEESC--CCC-----CCCCSSSSCCCEEEEE
T ss_pred CCEEEEEHHHHCCCCCCCCCCEEEECCC--CCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 7999965388548987455622563242--100243479999718699989997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.28 Score=21.47 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=51.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 99990899739999999999999998607997099999268-44499999999852697189998788877302267887
Q 000379 62 TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPT-VHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 62 ~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPt-v~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1604)
+.++.|||+|||....-++.++.. .+++..++-+.| +.=+.+|-+.+.+..++.+...... .+
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~-----~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~--~d--------- 75 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQ-----QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--AD--------- 75 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT-----TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTT--CC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCC--CC---------
T ss_conf 999899999989999999999997-----79947998232136661204555434338862113568--77---------
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 21799399984999999997227676644399993751003
Q 000379 141 EINKNDVLVMTPQILLDALRKAFLSLDIVCFIVIDECHHAT 181 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~liI~DEaH~~~ 181 (1604)
-.+++.+.+... .....++|++|=+=+..
T Consensus 76 ----------~~~~l~~~~~~a--~~~~~d~ilIDTaGr~~ 104 (211)
T d2qy9a2 76 ----------SASVIFDAIQAA--KARNIDVLIADTAGRLQ 104 (211)
T ss_dssp ----------HHHHHHHHHHHH--HHTTCSEEEECCCCCGG
T ss_pred ----------HHHHHHHHHHHH--HHCCCCEEEECCCCCCC
T ss_conf ----------999999999999--87699889965688763
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=90.23 E-value=0.31 Score=21.13 Aligned_cols=76 Identities=22% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHC-----CC-EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 88799990889999999613-----69-9999089973999999999999999860799709999926844499999999
Q 000379 40 NSINFIPRIYQLKVFEVAKR-----RN-TIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVI 113 (1604)
Q Consensus 40 ~~~~~~pR~yQ~e~l~~al~-----~n-~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i 113 (1604)
+... +|+.-|-++++.+.+ .+ ..+..-+|++|+++..-++... ++ .+||++|+...+.|+++.+
T Consensus 4 ~~~~-~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~--------~r-p~LvVt~~~~~A~~l~~dL 73 (408)
T d1c4oa1 4 YRGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL--------GR-PALVLAPNKILAAQLAAEF 73 (408)
T ss_dssp CCSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--------TC-CEEEEESSHHHHHHHHHHH
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--------CC-CEEEEECCHHHHHHHHHHH
T ss_conf 1489-999877999999999986699737985688878999999999985--------99-9999918999999999999
Q ss_pred HHHCCCCEEEEE
Q ss_conf 852697189998
Q 000379 114 RVHTDFEVEEYY 125 (1604)
Q Consensus 114 ~~~~~~~v~~~~ 125 (1604)
+.+++-....+.
T Consensus 74 ~~~l~~~~v~~f 85 (408)
T d1c4oa1 74 RELFPENAVEYF 85 (408)
T ss_dssp HHHCTTSEEEEC
T ss_pred HHHCCCCCEEEC
T ss_conf 986476645567
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.88 E-value=0.12 Score=24.02 Aligned_cols=25 Identities=40% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3699999089973999999999999
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
+.|+++..|||+|||++|--+++.+
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5647998999988999999999873
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.09 E-value=0.37 Score=20.53 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=53.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 99999089973999999999999999860799709999926844499999999852697189998788877302267887
Q 000379 61 NTIAVLETGAGKTMIAVMLIKDIAQAIKSNGFKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQK 140 (1604)
Q Consensus 61 n~Iv~~~TGsGKTliailli~~~l~~~~~~~~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~ 140 (1604)
..|++.|.|+|||..|.+++..+.... ... ..|. ..+. ....+.......+..+......
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~---~~~-----~~~~-~~~~-~~~~i~~~~~~~~~~~~~~~~~---------- 95 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCET---GIT-----ATPC-GVCD-NCREIEQGRFVDLIEIDAASRT---------- 95 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCTT---CSC-----SSCC-SCSH-HHHHHHHTCCTTEEEEETTCSS----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC---CCC-----CCCC-CCCH-HHHHHHCCCCCEEEEECCHHCC----------
T ss_conf 598888998758999999999846855---666-----6755-5424-7999974798707996112007----------
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 217993999849999999972276--7664439999375100389949999999983069998199993
Q 000379 141 EINKNDVLVMTPQILLDALRKAFL--SLDIVCFIVIDECHHATGNHPYTKIMKEFYHKSDNKPKVFGMT 207 (1604)
Q Consensus 141 ~~~~~~ViV~T~q~L~~~l~~~~i--~l~~i~liI~DEaH~~~~~~~~~~im~~~~~~~~~~prIlgLT 207 (1604)
..+.+.+.+..... ......++|+||+|.+... ..+.+.+ +....+...++++.|
T Consensus 96 ----------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-~q~~Llk-~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 96 ----------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-SFNALLK-TLEEPPEHVKFLLAT 152 (239)
T ss_dssp ----------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-HHHHHHH-HHHSCCTTEEEEEEE
T ss_pred ----------CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH-HHHHHHH-HHHCCCCCEEEEEEC
T ss_conf ----------89999999999974652599879999781108999-9999999-985689886999973
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=88.98 E-value=0.38 Score=20.47 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99889999999996099999489999711789999999974199999705999976788889899999999999971899
Q 000379 395 ISTKLHELLQLFLSFGKSTQVLCIIFVERIIAAKVVERFVKKVPFLTHLTVAYLTGSTTSVDALTPKVQKEVLESFRGGK 474 (1604)
Q Consensus 395 ~s~K~~~L~~iL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~~~~~~~~~l~G~~~~~~~l~~~~r~~vl~~Fr~g~ 474 (1604)
-+.|-...+..+.... ..+.++++-+.+..-+...++.++.....-+..+..+||. ++.+++.++.....+|+
T Consensus 86 GsGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~------~~~~~~~~~~~~~~~g~ 158 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRF------RSAKEQTQILAEVAEGK 158 (233)
T ss_dssp CTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTT------SCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEECCCC------CCCHHHHHHHHHHHCCC
T ss_conf 8772899999999999-7689569974688767999999999872479779763576------53126999999996799
Q ss_pred CEEEEECCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCEEEEEE
Q ss_conf 3099980443-35657787428999078999779999763-1113586599998
Q 000379 475 VNLLFATDVI-EEGMHVPNCSYVIRFDLPKTVSSYIQSRG-RARQHNSQFILML 526 (1604)
Q Consensus 475 ~niLIaTsvl-eeGIDIp~~nlVI~fD~p~s~~syiQr~G-RArR~gs~~i~lv 526 (1604)
.+++|.|..+ ...+.+++..+||.=+-.. -+|.|+.+ |+.+.+-..+++.
T Consensus 159 ~~iviGths~l~~~~~f~~LgLiIiDEeH~--fg~kQ~~~l~~~~~~~~~l~~S 210 (233)
T d2eyqa3 159 IDILIGTHKLLQSDVKFKDLGLLIVDEEHR--FGVRHKERIKAMRANVDILTLT 210 (233)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEEESGGG--SCHHHHHHHHHHHTTSEEEEEE
T ss_pred CCEEEEEHHHHCCCCCCCCCCCEEEECHHH--HHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788974202330677655546302223123--3257899999618899889996
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.87 E-value=0.39 Score=20.43 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 89999999613----69999908997399999999999999
Q 000379 49 YQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIAQ 85 (1604)
Q Consensus 49 yQ~e~l~~al~----~n~Iv~~~TGsGKTliailli~~~l~ 85 (1604)
...+.+..+++ .+.++..|+|+|||.++-.++.++..
T Consensus 19 ~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 19 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999998699885999899999849999999999709
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.84 E-value=0.39 Score=20.41 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 990889999999613----6999990899739999999999999
Q 000379 45 IPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 45 ~pR~yQ~e~l~~al~----~n~Iv~~~TGsGKTliailli~~~l 84 (1604)
.-..-..+.+..+.. .++|++.|+|+|||..+-+++.++.
T Consensus 17 vg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 17 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 59699999999999769998599988998775589999999851
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=86.87 E-value=0.5 Score=19.59 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=19.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 69999908997399999999999
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKD 82 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~ 82 (1604)
++++++.|.|+|||+++-.++.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 64887668988835999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.83 E-value=0.46 Score=19.89 Aligned_cols=25 Identities=40% Similarity=0.389 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3699999089973999999999999
Q 000379 59 RRNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 59 ~~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
.++++++.|||+|||.+|-.++..+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8669998999988889999986213
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=84.45 E-value=0.65 Score=18.78 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCC
Q ss_conf 308999999984199999999864599983596189999845999
Q 000379 584 DSSVNLIHRYCEMLPSDKYYTPKPIFKYKSAEEAYECELTLPSNA 628 (1604)
Q Consensus 584 ~~a~~~l~~yc~~lp~d~~~~~~p~~~~~~~~~~~~~~v~LP~~~ 628 (1604)
....++..+.++.....-.....|.....- .++.++.+.+|..+
T Consensus 74 ~~l~~~~~~la~~~~~~~~~~~~Pil~a~L-p~G~Rv~~v~~p~s 117 (323)
T d1g6oa_ 74 SRLMHFARCCASFKKKTIDNYENPILSSNL-ANGERVQIVLSPVT 117 (323)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSSCCEEEEEC-TTSCEEEEECTTTS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCEEEEEECCCCC
T ss_conf 999999999998729844567795366772-68538998246765
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.91 E-value=0.68 Score=18.62 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHC----CCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9990889999999613----6999990899739999999999999
Q 000379 44 FIPRIYQLKVFEVAKR----RNTIAVLETGAGKTMIAVMLIKDIA 84 (1604)
Q Consensus 44 ~~pR~yQ~e~l~~al~----~n~Iv~~~TGsGKTliailli~~~l 84 (1604)
+.-.....+.+..+++ .++|++.|.|+|||.++-.++.++.
T Consensus 26 iig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 26 IVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 139399999999999859997699978999748799999999987
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.14 E-value=0.73 Score=18.41 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=32.2
Q ss_pred CCCCCCCHHHHHHHHHHH-----C----CC----EEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 879999088999999961-----3----69----999908997399999999999999986
Q 000379 41 SINFIPRIYQLKVFEVAK-----R----RN----TIAVLETGAGKTMIAVMLIKDIAQAIK 88 (1604)
Q Consensus 41 ~~~~~pR~yQ~e~l~~al-----~----~n----~Iv~~~TGsGKTliailli~~~l~~~~ 88 (1604)
+..+.-|.-|.+.+..++ + .| ++++.|+|+|||.++-.++.++.....
T Consensus 15 P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~ 75 (287)
T d1w5sa2 15 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA 75 (287)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9988878999999999999999749988885348996789998999999999999875415
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=82.31 E-value=0.78 Score=18.19 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=58.9
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEE
Q ss_conf 97099999268444999999998526971899987888773022678872179939998499999999722767664439
Q 000379 92 FKKLIIFLAPTVHLVHQQYDVIRVHTDFEVEEYYGAKGVDEWDSQCWQKEINKNDVLVMTPQILLDALRKAFLSLDIVCF 171 (1604)
Q Consensus 92 ~~~~vliLvPtv~Lv~Qq~~~i~~~~~~~v~~~~G~~~~d~~~~~~w~~~~~~~~ViV~T~q~L~~~l~~~~i~l~~i~l 171 (1604)
.+.++++.|+++..++..++.+.. .++++..++|++..........+-.-+..+|+|+|. .+.. -++..++++
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~-~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~-----v~~~-GiDip~V~~ 102 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVE-HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE-GLDIPEVSL 102 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT-TCCCTTEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEE-----EEEE-ECCCCCCCE
T ss_conf 598389998230379999999986-597258986155418899999999779869999635-----6421-136777738
Q ss_pred EEEECCCC
Q ss_conf 99937510
Q 000379 172 IVIDECHH 179 (1604)
Q Consensus 172 iI~DEaH~ 179 (1604)
+|+=.++.
T Consensus 103 Vi~~~~~~ 110 (174)
T d1c4oa2 103 VAILDADK 110 (174)
T ss_dssp EEETTTTS
T ss_pred EEEECCCC
T ss_conf 99803654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=80.85 E-value=0.8 Score=18.10 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 699999089973999999999999
Q 000379 60 RNTIAVLETGAGKTMIAVMLIKDI 83 (1604)
Q Consensus 60 ~n~Iv~~~TGsGKTliailli~~~ 83 (1604)
.+++++.|+|+|||.+|-.++.++
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 748987999973889999998503
|